Query 003718
Match_columns 800
No_of_seqs 300 out of 1358
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 1.4E-68 3E-73 614.2 20.6 617 100-799 94-755 (775)
2 KOG1845 MORC family ATPases [C 99.9 9.1E-26 2E-30 261.4 3.2 273 189-512 1-278 (775)
3 PRK05218 heat shock protein 90 99.8 4.1E-18 8.9E-23 196.9 14.3 114 124-248 6-144 (613)
4 COG0326 HtpG Molecular chapero 99.7 1.2E-17 2.6E-22 190.8 6.8 131 124-265 7-161 (623)
5 PF13589 HATPase_c_3: Histidin 99.7 1.1E-17 2.3E-22 158.8 4.0 92 154-249 4-97 (137)
6 PRK14083 HSP90 family protein; 99.6 3.4E-16 7.4E-21 180.6 11.1 113 124-248 3-129 (601)
7 PTZ00130 heat shock protein 90 99.6 1.6E-15 3.4E-20 178.4 5.6 131 125-267 69-223 (814)
8 PTZ00272 heat shock protein 83 99.5 1E-14 2.2E-19 170.7 6.5 113 125-248 6-141 (701)
9 PRK00095 mutL DNA mismatch rep 99.3 1.2E-11 2.6E-16 143.8 16.5 93 148-248 18-116 (617)
10 KOG0019 Molecular chaperone (H 99.3 9.7E-13 2.1E-17 149.3 6.0 133 124-270 37-193 (656)
11 KOG0020 Endoplasmic reticulum 99.3 1.4E-12 3.1E-17 144.8 2.7 112 125-249 76-217 (785)
12 COG0323 MutL DNA mismatch repa 99.2 2.1E-11 4.6E-16 142.2 9.8 154 147-311 18-181 (638)
13 TIGR00585 mutl DNA mismatch re 99.0 6.9E-10 1.5E-14 118.9 8.8 90 149-246 19-114 (312)
14 KOG1979 DNA mismatch repair pr 98.7 2.2E-08 4.8E-13 114.0 8.8 157 147-313 22-187 (694)
15 COG1389 DNA topoisomerase VI, 98.7 3.3E-08 7.1E-13 110.5 10.0 97 151-248 35-139 (538)
16 PRK05559 DNA topoisomerase IV 98.4 2.2E-07 4.9E-12 108.9 6.6 123 115-248 5-140 (631)
17 TIGR01052 top6b DNA topoisomer 98.3 1.3E-06 2.8E-11 99.8 8.5 98 150-248 26-131 (488)
18 PRK04184 DNA topoisomerase VI 98.3 1.8E-06 3.8E-11 99.7 8.3 98 151-248 35-141 (535)
19 TIGR01055 parE_Gneg DNA topois 98.2 1.1E-06 2.4E-11 103.2 5.3 110 130-249 12-134 (625)
20 PF02518 HATPase_c: Histidine 98.2 2.6E-06 5.7E-11 76.4 6.6 91 152-246 5-98 (111)
21 PRK14868 DNA topoisomerase VI 98.2 3.2E-06 6.9E-11 100.3 8.6 96 151-248 45-148 (795)
22 KOG1978 DNA mismatch repair pr 98.2 1.3E-06 2.9E-11 101.5 5.0 92 149-248 17-114 (672)
23 PRK05644 gyrB DNA gyrase subun 98.1 2.6E-06 5.5E-11 100.4 6.4 123 115-248 5-140 (638)
24 PRK14939 gyrB DNA gyrase subun 98.0 7.9E-06 1.7E-10 97.7 7.0 112 130-249 15-141 (756)
25 TIGR01059 gyrB DNA gyrase, B s 98.0 9.2E-06 2E-10 95.9 6.6 111 131-248 10-133 (654)
26 PRK14867 DNA topoisomerase VI 97.9 1.7E-05 3.8E-10 93.4 7.7 95 152-247 36-138 (659)
27 smart00433 TOP2c Topoisomerase 97.9 8.8E-06 1.9E-10 95.2 3.7 87 156-248 5-104 (594)
28 cd00075 HATPase_c Histidine ki 97.5 0.00026 5.7E-09 59.2 6.1 88 155-246 3-93 (103)
29 COG3290 CitA Signal transducti 97.4 0.0002 4.4E-09 82.4 6.8 88 151-245 426-518 (537)
30 KOG1977 DNA mismatch repair pr 97.4 0.00011 2.5E-09 86.0 4.4 89 152-249 21-115 (1142)
31 smart00387 HATPase_c Histidine 97.4 0.00043 9.3E-09 58.9 6.7 75 153-231 6-80 (111)
32 PRK10604 sensor protein RstB; 97.2 0.0009 1.9E-08 74.3 8.7 91 151-246 318-411 (433)
33 PRK09470 cpxA two-component se 97.1 0.0012 2.7E-08 72.0 8.3 91 151-246 352-445 (461)
34 TIGR01386 cztS_silS_copS heavy 97.1 0.001 2.3E-08 72.1 6.9 91 151-244 352-445 (457)
35 PRK10364 sensor protein ZraS; 97.0 0.0015 3.3E-08 72.4 7.8 87 151-246 347-436 (457)
36 PRK11006 phoR phosphate regulo 97.0 0.0015 3.3E-08 72.0 7.7 93 151-246 316-411 (430)
37 COG0187 GyrB Type IIA topoisom 97.0 0.00037 7.9E-09 81.5 2.9 114 130-249 14-140 (635)
38 COG0642 BaeS Signal transducti 97.0 0.0012 2.7E-08 66.0 6.2 72 151-230 227-298 (336)
39 TIGR01058 parE_Gpos DNA topois 97.0 0.00093 2E-08 79.2 6.1 111 131-248 14-137 (637)
40 PRK09303 adaptive-response sen 96.9 0.003 6.4E-08 69.4 9.1 92 152-247 272-366 (380)
41 PRK10549 signal transduction h 96.9 0.0021 4.5E-08 70.6 7.7 92 152-246 352-446 (466)
42 TIGR02966 phoR_proteo phosphat 96.8 0.0022 4.8E-08 65.8 6.5 93 151-246 228-323 (333)
43 PRK11100 sensory histidine kin 96.8 0.0033 7.1E-08 68.5 7.8 92 151-246 367-461 (475)
44 PRK09467 envZ osmolarity senso 96.8 0.0042 9E-08 67.8 8.3 89 151-246 330-421 (435)
45 PRK10755 sensor protein BasS/P 96.7 0.0029 6.4E-08 67.5 6.9 91 150-247 245-338 (356)
46 PRK15053 dpiB sensor histidine 96.6 0.0038 8.3E-08 70.5 7.0 90 152-246 432-527 (545)
47 TIGR02938 nifL_nitrog nitrogen 96.6 0.0034 7.5E-08 68.1 6.2 89 153-246 388-482 (494)
48 PRK11086 sensory histidine kin 96.5 0.0046 1E-07 69.0 6.9 86 152-245 433-522 (542)
49 TIGR02916 PEP_his_kin putative 96.4 0.0056 1.2E-07 72.2 7.1 86 152-246 579-668 (679)
50 PRK11360 sensory histidine kin 96.4 0.0079 1.7E-07 66.8 7.9 87 152-246 500-589 (607)
51 PTZ00109 DNA gyrase subunit b; 96.3 0.0016 3.4E-08 79.2 1.6 121 117-248 99-272 (903)
52 TIGR03785 marine_sort_HK prote 96.3 0.0089 1.9E-07 71.5 7.6 94 151-247 596-692 (703)
53 PRK09835 sensor kinase CusS; P 96.2 0.012 2.5E-07 65.0 7.6 92 151-245 374-468 (482)
54 PRK10815 sensor protein PhoQ; 96.1 0.015 3.3E-07 66.2 8.4 85 153-246 379-466 (485)
55 PLN03128 DNA topoisomerase 2; 96.1 0.01 2.2E-07 74.5 7.2 87 154-245 54-154 (1135)
56 PRK13837 two-component VirA-li 96.1 0.015 3.3E-07 70.3 8.6 89 151-246 559-663 (828)
57 PTZ00108 DNA topoisomerase 2-l 96.1 0.009 1.9E-07 76.0 6.7 89 154-247 59-164 (1388)
58 PRK11073 glnL nitrogen regulat 96.1 0.018 3.8E-07 61.0 7.8 89 152-246 237-336 (348)
59 PLN03237 DNA topoisomerase 2; 96.0 0.0092 2E-07 75.9 6.5 87 154-245 79-179 (1465)
60 PHA02569 39 DNA topoisomerase 95.9 0.0065 1.4E-07 71.8 4.0 85 157-248 50-152 (602)
61 PRK10547 chemotaxis protein Ch 95.8 0.027 5.9E-07 67.5 8.9 90 154-246 387-511 (670)
62 PRK10337 sensor protein QseC; 95.8 0.021 4.6E-07 62.7 7.5 86 151-246 351-439 (449)
63 PRK11107 hybrid sensory histid 95.8 0.025 5.5E-07 67.8 8.4 93 152-246 408-506 (919)
64 PRK15347 two component system 95.7 0.028 6E-07 67.6 8.3 88 151-246 512-602 (921)
65 PRK11091 aerobic respiration c 95.5 0.038 8.1E-07 65.9 8.5 93 151-246 397-493 (779)
66 PRK11466 hybrid sensory histid 95.4 0.042 9.2E-07 66.3 8.7 88 151-246 560-650 (914)
67 TIGR01925 spIIAB anti-sigma F 95.2 0.064 1.4E-06 50.3 7.2 84 153-245 40-125 (137)
68 TIGR02956 TMAO_torS TMAO reduc 95.1 0.058 1.3E-06 65.4 8.3 90 151-246 578-671 (968)
69 COG4191 Signal transduction hi 95.1 0.034 7.4E-07 65.3 6.0 61 153-215 498-559 (603)
70 PRK10490 sensor protein KdpD; 95.0 0.047 1E-06 67.2 7.5 91 151-246 777-870 (895)
71 PRK10618 phosphotransfer inter 94.9 0.062 1.3E-06 66.4 7.9 93 151-246 564-660 (894)
72 PRK04069 serine-protein kinase 94.8 0.043 9.4E-07 53.9 5.2 85 155-244 45-131 (161)
73 TIGR01924 rsbW_low_gc serine-p 94.8 0.062 1.4E-06 53.0 6.2 87 153-244 43-131 (159)
74 KOG3850 Predicted membrane pro 94.7 1.2 2.6E-05 50.4 16.4 67 723-789 262-353 (455)
75 PRK10841 hybrid sensory kinase 94.6 0.086 1.9E-06 65.2 8.3 92 151-246 561-655 (924)
76 PF13581 HATPase_c_2: Histidin 94.3 0.088 1.9E-06 48.5 5.8 80 153-242 32-113 (125)
77 PRK13557 histidine kinase; Pro 94.3 0.12 2.6E-06 57.5 7.8 90 152-246 277-382 (540)
78 PRK09959 hybrid sensory histid 94.2 0.087 1.9E-06 65.8 7.1 92 151-246 827-924 (1197)
79 PRK03660 anti-sigma F factor; 93.7 0.23 5E-06 46.9 7.3 84 153-245 40-125 (146)
80 PRK10600 nitrate/nitrite senso 93.4 0.17 3.6E-06 58.5 7.1 75 151-247 468-545 (569)
81 KOG0787 Dehydrogenase kinase [ 92.6 0.24 5.2E-06 55.9 6.5 88 156-245 264-367 (414)
82 PF11559 ADIP: Afadin- and alp 92.4 1 2.2E-05 44.1 9.9 74 725-798 70-150 (151)
83 PF09726 Macoilin: Transmembra 92.3 0.4 8.7E-06 58.1 8.4 67 722-795 461-527 (697)
84 PF12325 TMF_TATA_bd: TATA ele 92.1 0.73 1.6E-05 44.5 8.3 75 717-795 19-103 (120)
85 COG2972 Predicted signal trans 92.1 0.15 3.2E-06 58.1 4.3 71 156-236 354-425 (456)
86 PF10267 Tmemb_cc2: Predicted 91.7 2.9 6.2E-05 47.8 13.7 67 723-789 221-305 (395)
87 COG4192 Signal transduction hi 91.4 0.38 8.3E-06 55.6 6.4 63 153-216 565-627 (673)
88 COG2205 KdpD Osmosensitive K+ 91.3 0.38 8.2E-06 58.8 6.6 61 152-215 775-836 (890)
89 PRK11644 sensory histidine kin 91.0 0.32 6.9E-06 56.1 5.4 70 152-244 410-482 (495)
90 PF07888 CALCOCO1: Calcium bin 90.8 1.2 2.6E-05 52.6 9.8 68 719-786 155-222 (546)
91 PRK13560 hypothetical protein; 90.7 0.26 5.6E-06 57.8 4.6 73 156-245 715-792 (807)
92 COG4585 Signal transduction hi 90.6 0.34 7.4E-06 53.0 5.0 75 151-246 278-353 (365)
93 COG0643 CheA Chemotaxis protei 88.5 1.1 2.4E-05 54.6 7.5 90 155-247 435-562 (716)
94 COG5000 NtrY Signal transducti 88.0 0.78 1.7E-05 54.7 5.7 62 154-215 602-667 (712)
95 PRK10884 SH3 domain-containing 87.8 3.4 7.3E-05 43.3 9.7 30 716-745 88-117 (206)
96 COG4026 Uncharacterized protei 87.4 3.5 7.5E-05 44.0 9.3 70 729-798 129-201 (290)
97 COG3850 NarQ Signal transducti 87.2 0.69 1.5E-05 54.3 4.6 75 154-248 483-558 (574)
98 KOG2129 Uncharacterized conser 86.8 3.2 7E-05 47.5 9.3 79 719-798 134-225 (552)
99 COG3920 Signal transduction hi 86.2 1.1 2.5E-05 46.8 5.2 47 156-202 126-174 (221)
100 KOG1962 B-cell receptor-associ 85.4 2.4 5.3E-05 44.8 7.1 62 726-798 149-210 (216)
101 PF03962 Mnd1: Mnd1 family; I 84.9 4.1 8.9E-05 42.0 8.4 76 720-795 68-149 (188)
102 KOG1962 B-cell receptor-associ 84.0 5.5 0.00012 42.3 8.9 56 726-781 132-190 (216)
103 COG2172 RsbW Anti-sigma regula 83.9 3 6.5E-05 41.2 6.7 87 151-246 39-128 (146)
104 PRK10935 nitrate/nitrite senso 83.7 1.5 3.3E-05 49.9 5.2 47 153-202 472-518 (565)
105 PF06705 SF-assemblin: SF-asse 83.4 6.2 0.00013 41.8 9.2 34 765-798 123-156 (247)
106 PRK13559 hypothetical protein; 82.8 2 4.2E-05 46.2 5.3 50 153-202 268-319 (361)
107 COG1579 Zn-ribbon protein, pos 81.8 8.8 0.00019 41.3 9.6 79 719-797 57-158 (239)
108 KOG0971 Microtubule-associated 81.6 5.6 0.00012 49.4 8.9 90 707-798 950-1050(1243)
109 PF08317 Spc7: Spc7 kinetochor 81.1 7 0.00015 43.2 8.9 76 723-798 211-286 (325)
110 PF07334 IFP_35_N: Interferon- 80.6 1.5 3.2E-05 39.6 2.8 25 722-746 1-25 (76)
111 KOG0161 Myosin class II heavy 80.3 7.5 0.00016 52.2 10.0 79 720-798 1089-1170(1930)
112 PF12777 MT: Microtubule-bindi 79.8 4.5 9.7E-05 45.0 6.9 72 723-798 237-308 (344)
113 PRK10884 SH3 domain-containing 79.7 4.8 0.0001 42.2 6.7 29 718-746 97-125 (206)
114 PRK11637 AmiB activator; Provi 78.3 9.8 0.00021 43.3 9.2 73 723-795 49-128 (428)
115 COG5002 VicK Signal transducti 76.2 3.2 6.9E-05 47.1 4.4 73 154-230 344-417 (459)
116 COG3851 UhpB Signal transducti 75.0 4.1 8.8E-05 46.4 4.9 63 136-202 394-456 (497)
117 PF10482 CtIP_N: Tumour-suppre 73.9 19 0.00042 35.0 8.3 74 724-797 45-119 (120)
118 TIGR03185 DNA_S_dndD DNA sulfu 72.8 14 0.0003 44.5 8.9 46 750-795 231-276 (650)
119 PRK11637 AmiB activator; Provi 72.2 23 0.00049 40.5 10.1 27 754-780 224-250 (428)
120 PF09421 FRQ: Frequency clock 71.4 20 0.00043 45.3 9.8 45 711-757 127-171 (989)
121 PF04156 IncA: IncA protein; 71.4 32 0.00069 34.6 9.9 28 720-747 87-114 (191)
122 PF14362 DUF4407: Domain of un 70.6 22 0.00047 38.5 9.1 61 720-780 141-213 (301)
123 PF12329 TMF_DNA_bd: TATA elem 70.2 23 0.00049 31.6 7.5 55 722-776 13-67 (74)
124 PF04156 IncA: IncA protein; 70.1 27 0.00059 35.1 9.1 46 723-768 97-142 (191)
125 COG1579 Zn-ribbon protein, pos 69.9 32 0.00069 37.2 9.9 75 723-797 91-172 (239)
126 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.9 44 0.00095 32.4 10.1 72 722-793 25-103 (132)
127 PF13256 DUF4047: Domain of un 69.9 37 0.00079 33.4 9.3 78 714-794 23-102 (125)
128 PF09755 DUF2046: Uncharacteri 69.6 29 0.00063 38.8 9.7 32 767-798 171-202 (310)
129 PF08614 ATG16: Autophagy prot 69.2 30 0.00066 35.5 9.3 60 722-781 117-183 (194)
130 COG2433 Uncharacterized conser 68.2 20 0.00042 43.2 8.5 25 720-744 428-452 (652)
131 KOG3990 Uncharacterized conser 68.1 53 0.0011 36.0 10.9 55 722-776 226-294 (305)
132 PF12128 DUF3584: Protein of u 67.9 24 0.00051 45.7 9.9 77 722-798 772-865 (1201)
133 KOG4360 Uncharacterized coiled 67.3 30 0.00065 41.0 9.6 67 722-788 203-272 (596)
134 PF15294 Leu_zip: Leucine zipp 67.2 32 0.00069 38.0 9.4 45 719-763 130-174 (278)
135 PF07989 Microtub_assoc: Micro 67.2 21 0.00046 32.0 6.7 26 720-745 6-31 (75)
136 KOG2002 TPR-containing nuclear 66.8 30 0.00064 43.7 9.9 55 745-799 809-872 (1018)
137 PF08614 ATG16: Autophagy prot 66.7 19 0.00041 36.9 7.3 59 721-779 102-160 (194)
138 COG2433 Uncharacterized conser 66.1 31 0.00067 41.7 9.6 26 720-745 442-467 (652)
139 PF13118 DUF3972: Protein of u 66.1 7.1 0.00015 38.4 3.8 40 722-761 86-125 (126)
140 KOG0977 Nuclear envelope prote 65.8 20 0.00043 42.8 8.0 72 719-790 111-196 (546)
141 KOG0250 DNA repair protein RAD 65.4 29 0.00064 44.2 9.7 79 720-798 364-453 (1074)
142 COG3074 Uncharacterized protei 65.0 32 0.00069 31.0 7.2 29 749-777 32-60 (79)
143 PF13851 GAS: Growth-arrest sp 64.9 37 0.00081 35.4 9.0 29 753-781 90-118 (201)
144 PF07200 Mod_r: Modifier of ru 64.8 20 0.00042 35.0 6.6 76 720-795 33-117 (150)
145 PF15254 CCDC14: Coiled-coil d 64.7 32 0.00069 42.6 9.5 56 723-778 389-463 (861)
146 PF09728 Taxilin: Myosin-like 64.3 35 0.00075 37.9 9.1 76 724-800 131-221 (309)
147 COG4251 Bacteriophytochrome (l 64.0 8.1 0.00017 46.7 4.4 57 151-209 635-691 (750)
148 KOG3915 Transcription regulato 63.5 16 0.00034 42.7 6.4 51 744-794 537-594 (641)
149 PF15236 CCDC66: Coiled-coil d 63.3 1.3E+02 0.0027 30.9 12.0 21 696-717 23-43 (157)
150 PF13870 DUF4201: Domain of un 62.9 64 0.0014 32.5 10.0 66 723-788 44-123 (177)
151 PF07106 TBPIP: Tat binding pr 62.7 21 0.00045 35.7 6.5 21 723-743 81-101 (169)
152 PF11577 NEMO: NF-kappa-B esse 62.0 41 0.00089 29.9 7.3 54 722-785 7-60 (68)
153 TIGR02894 DNA_bind_RsfA transc 61.9 33 0.00072 35.1 7.7 37 748-784 117-153 (161)
154 PF00038 Filament: Intermediat 61.6 62 0.0013 34.9 10.4 63 722-784 210-272 (312)
155 PF15254 CCDC14: Coiled-coil d 61.2 29 0.00062 43.0 8.3 73 719-795 460-543 (861)
156 smart00787 Spc7 Spc7 kinetocho 61.1 50 0.0011 36.9 9.6 68 731-798 207-281 (312)
157 PF05911 DUF869: Plant protein 60.8 37 0.00079 42.3 9.3 76 723-798 58-144 (769)
158 TIGR03185 DNA_S_dndD DNA sulfu 60.1 35 0.00076 41.1 8.9 46 750-795 224-269 (650)
159 PRK10361 DNA recombination pro 59.7 55 0.0012 38.7 10.0 63 734-796 59-121 (475)
160 PF12329 TMF_DNA_bd: TATA elem 59.6 82 0.0018 28.1 9.0 66 733-798 3-71 (74)
161 PF05557 MAD: Mitotic checkpoi 59.6 16 0.00034 44.6 6.0 64 721-784 566-634 (722)
162 PRK04778 septation ring format 59.2 33 0.00071 40.9 8.4 59 723-781 350-408 (569)
163 PF13851 GAS: Growth-arrest sp 58.9 27 0.00058 36.5 6.7 49 722-770 28-76 (201)
164 PF09325 Vps5: Vps5 C terminal 58.4 42 0.00092 34.4 8.1 69 729-797 143-212 (236)
165 KOG0243 Kinesin-like protein [ 58.2 51 0.0011 42.1 10.0 64 722-785 449-512 (1041)
166 KOG0976 Rho/Rac1-interacting s 58.1 45 0.00097 41.6 9.1 76 722-797 100-175 (1265)
167 PF02646 RmuC: RmuC family; I 58.0 30 0.00066 38.0 7.3 65 718-782 3-67 (304)
168 PF10186 Atg14: UV radiation r 57.9 72 0.0016 33.7 9.9 63 722-784 28-105 (302)
169 PF04849 HAP1_N: HAP1 N-termin 57.5 59 0.0013 36.4 9.4 38 749-786 248-285 (306)
170 PRK00409 recombination and DNA 57.1 47 0.001 41.3 9.5 32 750-781 564-595 (782)
171 KOG1853 LIS1-interacting prote 57.0 65 0.0014 35.4 9.3 68 727-797 33-100 (333)
172 PF14282 FlxA: FlxA-like prote 56.9 30 0.00065 32.6 6.1 51 722-772 20-74 (106)
173 KOG0355 DNA topoisomerase type 56.4 20 0.00042 44.6 5.9 49 153-204 54-102 (842)
174 PRK10780 periplasmic chaperone 56.2 77 0.0017 31.7 9.3 76 722-797 44-125 (165)
175 PF08397 IMD: IRSp53/MIM homol 56.1 44 0.00095 34.9 7.8 64 724-787 105-177 (219)
176 TIGR03752 conj_TIGR03752 integ 56.0 34 0.00073 40.3 7.5 18 726-743 64-81 (472)
177 PF11932 DUF3450: Protein of u 55.9 47 0.001 35.3 8.1 37 723-759 44-80 (251)
178 PF04871 Uso1_p115_C: Uso1 / p 55.8 83 0.0018 31.1 9.2 63 724-786 30-100 (136)
179 PF04111 APG6: Autophagy prote 55.8 81 0.0018 35.1 10.2 44 723-773 52-95 (314)
180 COG5185 HEC1 Protein involved 55.7 38 0.00081 39.9 7.7 53 745-797 486-542 (622)
181 PHA02675 ORF104 fusion protein 55.5 43 0.00094 31.0 6.5 43 731-773 33-75 (90)
182 PF10186 Atg14: UV radiation r 55.4 79 0.0017 33.4 9.7 39 725-763 67-105 (302)
183 PF11544 Spc42p: Spindle pole 55.2 37 0.0008 30.9 6.0 41 726-770 3-43 (76)
184 PF15188 CCDC-167: Coiled-coil 55.2 22 0.00047 32.9 4.7 52 723-774 7-61 (85)
185 PF14197 Cep57_CLD_2: Centroso 54.8 1.1E+02 0.0023 27.2 8.7 20 725-744 2-21 (69)
186 PF11559 ADIP: Afadin- and alp 54.6 1.1E+02 0.0025 29.9 10.0 70 725-794 45-118 (151)
187 KOG0982 Centrosomal protein Nu 54.5 61 0.0013 37.9 9.0 75 724-798 246-349 (502)
188 PF11577 NEMO: NF-kappa-B esse 54.5 35 0.00075 30.3 5.7 48 724-771 20-67 (68)
189 PF10473 CENP-F_leu_zip: Leuci 54.4 89 0.0019 31.3 9.2 46 723-768 12-57 (140)
190 PF12072 DUF3552: Domain of un 53.2 1E+02 0.0022 32.0 9.9 27 723-749 73-99 (201)
191 PF09726 Macoilin: Transmembra 53.1 50 0.0011 40.7 8.7 61 733-793 543-610 (697)
192 PF06785 UPF0242: Uncharacteri 53.1 57 0.0012 37.0 8.3 62 723-784 101-176 (401)
193 PF00038 Filament: Intermediat 52.8 44 0.00096 36.1 7.5 59 720-778 229-291 (312)
194 TIGR01069 mutS2 MutS2 family p 52.7 56 0.0012 40.6 9.1 31 751-781 560-590 (771)
195 COG3852 NtrB Signal transducti 52.2 20 0.00044 40.3 4.8 75 152-232 241-326 (363)
196 PF14182 YgaB: YgaB-like prote 52.0 71 0.0015 29.3 7.3 47 734-780 7-64 (79)
197 PF10473 CENP-F_leu_zip: Leuci 51.2 1.4E+02 0.003 30.0 9.9 70 723-792 54-123 (140)
198 TIGR00219 mreC rod shape-deter 50.3 25 0.00055 38.4 5.1 25 722-746 67-91 (283)
199 PF06657 Cep57_MT_bd: Centroso 50.2 39 0.00085 30.5 5.5 59 718-776 14-77 (79)
200 TIGR02169 SMC_prok_A chromosom 50.2 80 0.0017 39.7 10.1 18 189-208 26-43 (1164)
201 KOG3119 Basic region leucine z 50.1 60 0.0013 35.4 7.9 58 731-795 193-250 (269)
202 PRK12705 hypothetical protein; 49.7 54 0.0012 39.0 8.0 43 723-765 72-114 (508)
203 PF06273 eIF-4B: Plant specifi 49.6 21 0.00045 42.0 4.6 52 723-774 368-421 (492)
204 cd07643 I-BAR_IMD_MIM Inverse 49.5 78 0.0017 34.2 8.4 65 722-788 98-191 (231)
205 TIGR02449 conserved hypothetic 49.3 39 0.00085 29.8 5.1 41 723-770 16-56 (65)
206 PRK09039 hypothetical protein; 49.1 87 0.0019 35.3 9.2 59 723-781 48-106 (343)
207 PF09403 FadA: Adhesion protei 49.1 84 0.0018 31.0 7.9 32 749-780 89-120 (126)
208 COG3275 LytS Putative regulato 48.9 25 0.00054 41.6 5.0 45 156-202 460-507 (557)
209 PF00769 ERM: Ezrin/radixin/mo 48.8 84 0.0018 33.8 8.7 28 771-798 86-113 (246)
210 PF09755 DUF2046: Uncharacteri 48.6 1.5E+02 0.0032 33.5 10.6 15 762-776 83-97 (310)
211 KOG0241 Kinesin-like protein [ 48.3 30 0.00065 43.8 5.7 20 749-768 411-430 (1714)
212 PF07160 DUF1395: Protein of u 48.2 42 0.00091 36.1 6.3 54 716-769 17-70 (243)
213 PF13874 Nup54: Nucleoporin co 47.8 44 0.00095 32.9 5.9 14 785-798 104-117 (141)
214 PF05377 FlaC_arch: Flagella a 47.8 16 0.00034 31.3 2.4 30 717-746 10-39 (55)
215 COG4026 Uncharacterized protei 47.5 64 0.0014 34.9 7.3 16 728-743 149-164 (290)
216 KOG4673 Transcription factor T 47.4 99 0.0021 38.2 9.6 74 720-797 345-439 (961)
217 PF09789 DUF2353: Uncharacteri 47.3 99 0.0021 34.9 9.1 60 722-781 31-111 (319)
218 KOG2072 Translation initiation 47.1 94 0.002 39.0 9.5 22 722-743 671-692 (988)
219 KOG0161 Myosin class II heavy 46.9 88 0.0019 42.7 10.0 36 759-794 1093-1128(1930)
220 PRK00409 recombination and DNA 46.8 97 0.0021 38.6 9.9 24 719-742 518-541 (782)
221 KOG0804 Cytoplasmic Zn-finger 46.6 97 0.0021 36.5 9.1 55 727-781 381-435 (493)
222 TIGR00606 rad50 rad50. This fa 46.6 73 0.0016 41.7 9.2 48 751-798 897-944 (1311)
223 PF04111 APG6: Autophagy prote 46.5 1.5E+02 0.0032 33.2 10.3 21 753-773 61-81 (314)
224 PF12128 DUF3584: Protein of u 46.5 75 0.0016 41.3 9.2 59 719-777 734-799 (1201)
225 PF08317 Spc7: Spc7 kinetochor 46.5 90 0.0019 34.7 8.7 51 723-773 218-268 (325)
226 PRK02224 chromosome segregatio 46.4 50 0.0011 40.8 7.4 17 728-744 258-274 (880)
227 PF07106 TBPIP: Tat binding pr 46.1 82 0.0018 31.5 7.7 22 723-744 74-95 (169)
228 PF15265 FAM196: FAM196 family 46.0 1.5E+02 0.0033 35.5 10.7 36 728-763 388-423 (514)
229 PF12718 Tropomyosin_1: Tropom 45.9 93 0.002 30.9 7.9 15 754-768 85-99 (143)
230 PHA00728 hypothetical protein 45.7 17 0.00037 35.7 2.6 25 721-745 5-29 (151)
231 PF07888 CALCOCO1: Calcium bin 45.5 1.2E+02 0.0026 36.6 9.9 70 727-796 149-221 (546)
232 PF10458 Val_tRNA-synt_C: Valy 45.0 64 0.0014 27.8 5.8 49 720-768 3-65 (66)
233 KOG1937 Uncharacterized conser 45.0 95 0.0021 36.6 8.7 24 775-798 353-376 (521)
234 PF07798 DUF1640: Protein of u 44.8 1.3E+02 0.0028 30.6 8.9 19 779-797 129-147 (177)
235 PF05103 DivIVA: DivIVA protei 44.5 8 0.00017 36.4 0.2 74 720-793 31-119 (131)
236 PF02841 GBP_C: Guanylate-bind 44.5 1.1E+02 0.0023 33.5 8.9 15 779-793 282-296 (297)
237 cd07627 BAR_Vps5p The Bin/Amph 44.4 72 0.0016 33.2 7.2 50 749-798 143-193 (216)
238 PF01486 K-box: K-box region; 44.4 57 0.0012 30.0 5.8 21 723-743 21-41 (100)
239 KOG0250 DNA repair protein RAD 44.3 1E+02 0.0023 39.6 9.5 49 749-797 295-346 (1074)
240 TIGR02169 SMC_prok_A chromosom 43.9 1.1E+02 0.0024 38.5 9.9 6 406-411 112-117 (1164)
241 PF03938 OmpH: Outer membrane 43.7 1.7E+02 0.0037 28.4 9.3 28 721-748 36-63 (158)
242 cd07596 BAR_SNX The Bin/Amphip 42.8 86 0.0019 31.3 7.3 68 730-797 119-194 (218)
243 PF01119 DNA_mis_repair: DNA m 42.2 1.1E+02 0.0023 28.9 7.3 77 449-525 26-118 (119)
244 PF04949 Transcrip_act: Transc 42.1 1.7E+02 0.0037 29.9 8.9 33 749-781 105-137 (159)
245 KOG0995 Centromere-associated 42.1 99 0.0022 37.3 8.5 73 722-798 236-325 (581)
246 PRK11546 zraP zinc resistance 41.9 92 0.002 31.4 7.1 64 720-790 53-116 (143)
247 PF11932 DUF3450: Protein of u 41.9 1.8E+02 0.0038 31.0 9.8 42 722-763 57-98 (251)
248 PF15290 Syntaphilin: Golgi-lo 41.9 1.4E+02 0.003 33.4 8.9 71 694-780 57-141 (305)
249 PF10168 Nup88: Nuclear pore c 41.9 1.2E+02 0.0027 37.5 9.6 15 108-122 112-126 (717)
250 COG1196 Smc Chromosome segrega 41.8 1.2E+02 0.0025 39.4 9.9 34 754-787 854-887 (1163)
251 COG3883 Uncharacterized protei 41.5 1.6E+02 0.0034 32.6 9.4 68 722-793 149-216 (265)
252 PF09738 DUF2051: Double stran 41.3 2.4E+02 0.0051 31.7 10.9 73 722-794 78-164 (302)
253 TIGR01554 major_cap_HK97 phage 41.1 93 0.002 34.9 7.9 16 725-740 3-18 (378)
254 PF14662 CCDC155: Coiled-coil 41.1 1.9E+02 0.0042 30.6 9.5 47 751-797 76-125 (193)
255 PF06785 UPF0242: Uncharacteri 40.6 88 0.0019 35.6 7.4 76 718-793 131-220 (401)
256 PF06705 SF-assemblin: SF-asse 40.5 2E+02 0.0043 30.7 9.8 68 730-797 36-126 (247)
257 PRK09039 hypothetical protein; 40.4 1E+02 0.0022 34.8 8.0 46 723-768 139-184 (343)
258 KOG0239 Kinesin (KAR3 subfamil 40.3 1.3E+02 0.0028 37.1 9.5 42 722-763 228-269 (670)
259 PRK04863 mukB cell division pr 40.0 73 0.0016 42.5 7.8 55 718-772 989-1043(1486)
260 PF07139 DUF1387: Protein of u 39.8 1.2E+02 0.0026 34.0 8.3 64 721-784 182-260 (302)
261 PHA02562 46 endonuclease subun 39.7 1.6E+02 0.0035 34.3 9.8 19 332-350 7-25 (562)
262 cd07623 BAR_SNX1_2 The Bin/Amp 39.7 1.1E+02 0.0024 32.1 7.8 69 728-798 130-199 (224)
263 KOG0933 Structural maintenance 39.6 1.2E+02 0.0027 38.8 9.1 78 720-797 793-880 (1174)
264 PF14772 NYD-SP28: Sperm tail 39.5 2.8E+02 0.0061 25.7 9.6 42 749-790 51-92 (104)
265 TIGR02168 SMC_prok_B chromosom 39.4 1.5E+02 0.0032 37.1 10.1 11 727-737 837-847 (1179)
266 COG0419 SbcC ATPase involved i 39.4 1.2E+02 0.0025 38.3 9.1 41 740-780 313-353 (908)
267 PF15070 GOLGA2L5: Putative go 39.3 1.4E+02 0.0031 36.4 9.5 46 723-768 17-62 (617)
268 PF06810 Phage_GP20: Phage min 39.2 1.4E+02 0.003 30.1 8.0 18 751-768 53-70 (155)
269 TIGR03752 conj_TIGR03752 integ 39.1 1.9E+02 0.0041 34.4 10.0 10 718-727 60-69 (472)
270 smart00502 BBC B-Box C-termina 38.9 1.4E+02 0.0029 27.2 7.4 47 724-770 42-93 (127)
271 PF08657 DASH_Spc34: DASH comp 38.8 82 0.0018 34.4 6.8 68 731-798 176-256 (259)
272 PF05622 HOOK: HOOK protein; 38.7 10 0.00022 46.1 0.0 76 723-798 241-325 (713)
273 PF09789 DUF2353: Uncharacteri 38.7 1.3E+02 0.0028 34.0 8.4 61 723-783 81-160 (319)
274 TIGR01069 mutS2 MutS2 family p 38.6 1.6E+02 0.0035 36.7 10.1 13 155-167 124-136 (771)
275 KOG4403 Cell surface glycoprot 38.2 1.1E+02 0.0024 35.9 7.9 11 788-798 309-319 (575)
276 PF08537 NBP1: Fungal Nap bind 38.2 40 0.00086 37.9 4.4 39 723-761 177-222 (323)
277 PF09177 Syntaxin-6_N: Syntaxi 38.0 91 0.002 28.6 6.0 54 744-798 40-94 (97)
278 KOG4593 Mitotic checkpoint pro 37.9 77 0.0017 39.0 6.9 67 720-786 558-630 (716)
279 PF04420 CHD5: CHD5-like prote 37.8 37 0.0008 34.2 3.8 47 725-773 44-90 (161)
280 TIGR02168 SMC_prok_B chromosom 37.8 1.4E+02 0.0031 37.3 9.6 14 724-737 799-812 (1179)
281 PRK14153 heat shock protein Gr 37.8 1.1E+02 0.0023 32.2 7.2 21 723-743 42-62 (194)
282 PF10779 XhlA: Haemolysin XhlA 37.7 1.4E+02 0.003 26.2 6.8 42 732-773 3-44 (71)
283 TIGR00998 8a0101 efflux pump m 37.7 98 0.0021 33.5 7.2 32 712-743 71-102 (334)
284 PRK02224 chromosome segregatio 37.4 1.3E+02 0.0027 37.4 8.9 20 188-209 25-44 (880)
285 PF08912 Rho_Binding: Rho Bind 37.3 1.7E+02 0.0037 26.4 7.2 28 723-750 5-32 (69)
286 COG1196 Smc Chromosome segrega 37.0 1.5E+02 0.0032 38.6 9.7 25 187-213 25-51 (1163)
287 PF14193 DUF4315: Domain of un 36.9 78 0.0017 29.1 5.3 37 736-772 2-38 (83)
288 KOG0612 Rho-associated, coiled 36.8 1.3E+02 0.0028 39.3 8.8 32 744-775 503-534 (1317)
289 PF02346 Vac_Fusion: Chordopox 36.6 1E+02 0.0022 26.7 5.5 41 731-771 4-44 (57)
290 PF00435 Spectrin: Spectrin re 36.4 2.7E+02 0.0058 23.7 8.7 34 745-778 37-70 (105)
291 PF05837 CENP-H: Centromere pr 36.3 2.2E+02 0.0047 27.0 8.4 44 722-765 4-47 (106)
292 PF08826 DMPK_coil: DMPK coile 36.1 1.1E+02 0.0025 26.6 5.9 22 754-775 30-51 (61)
293 KOG3584 cAMP response element 35.9 56 0.0012 36.4 4.9 36 745-780 308-343 (348)
294 PF05266 DUF724: Protein of un 35.9 2.6E+02 0.0056 29.3 9.6 54 717-771 93-146 (190)
295 PF10211 Ax_dynein_light: Axon 35.6 2.7E+02 0.0058 28.9 9.7 75 720-794 83-176 (189)
296 KOG0447 Dynamin-like GTP bindi 35.4 75 0.0016 38.5 6.1 55 728-783 226-292 (980)
297 KOG2185 Predicted RNA-processi 35.1 81 0.0018 36.7 6.2 54 723-776 415-471 (486)
298 PRK07352 F0F1 ATP synthase sub 35.0 2.8E+02 0.006 28.0 9.5 48 733-780 48-95 (174)
299 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.0 3.8E+02 0.0083 26.0 10.1 61 723-783 5-65 (132)
300 PF06005 DUF904: Protein of un 35.0 1.9E+02 0.004 26.0 7.2 53 722-774 5-57 (72)
301 PF15233 SYCE1: Synaptonemal c 34.9 1.9E+02 0.0042 28.9 7.9 62 726-787 46-120 (134)
302 KOG1899 LAR transmembrane tyro 33.9 1.1E+02 0.0024 37.5 7.2 37 731-767 149-185 (861)
303 PF05769 DUF837: Protein of un 33.8 3.2E+02 0.007 28.4 9.8 23 722-744 71-93 (181)
304 KOG1029 Endocytic adaptor prot 33.8 1.6E+02 0.0035 37.0 8.6 70 727-798 385-454 (1118)
305 PF09731 Mitofilin: Mitochondr 33.7 2.5E+02 0.0054 33.4 10.3 29 720-748 250-278 (582)
306 PF00769 ERM: Ezrin/radixin/mo 33.5 1.8E+02 0.004 31.3 8.3 37 727-763 4-47 (246)
307 TIGR00634 recN DNA repair prot 33.4 1.4E+02 0.003 35.6 8.1 53 737-789 327-379 (563)
308 KOG4005 Transcription factor X 33.1 1.4E+02 0.003 32.7 7.2 43 749-793 118-160 (292)
309 PF04849 HAP1_N: HAP1 N-termin 33.1 2.6E+02 0.0056 31.6 9.5 75 723-797 205-285 (306)
310 PF05529 Bap31: B-cell recepto 33.0 1.3E+02 0.0027 30.8 6.7 28 749-776 154-181 (192)
311 PRK09174 F0F1 ATP synthase sub 33.0 2.4E+02 0.0052 29.6 8.9 48 730-777 79-126 (204)
312 KOG0239 Kinesin (KAR3 subfamil 32.7 1.9E+02 0.0042 35.7 9.3 42 727-768 240-281 (670)
313 TIGR02338 gimC_beta prefoldin, 32.7 99 0.0021 29.1 5.5 37 732-768 71-107 (110)
314 PF15456 Uds1: Up-regulated Du 32.7 2.4E+02 0.0053 27.6 8.3 59 723-781 24-106 (124)
315 PF14501 HATPase_c_5: GHKL dom 32.6 70 0.0015 28.8 4.4 43 154-198 7-51 (100)
316 KOG2751 Beclin-like protein [S 32.6 1.4E+02 0.0031 34.9 7.7 28 759-786 193-220 (447)
317 PF05911 DUF869: Plant protein 32.6 1.9E+02 0.0041 36.3 9.2 42 744-785 654-695 (769)
318 PF12004 DUF3498: Domain of un 32.5 15 0.00032 43.4 0.0 17 780-796 420-436 (495)
319 PF02388 FemAB: FemAB family; 32.4 1.6E+02 0.0035 33.7 8.1 58 720-781 241-298 (406)
320 PF09731 Mitofilin: Mitochondr 32.3 2.5E+02 0.0055 33.3 10.0 24 775-798 365-388 (582)
321 PRK13460 F0F1 ATP synthase sub 32.3 3.2E+02 0.007 27.5 9.4 52 732-783 44-95 (173)
322 PF02609 Exonuc_VII_S: Exonucl 32.2 98 0.0021 25.6 4.8 47 718-768 7-53 (53)
323 KOG0804 Cytoplasmic Zn-finger 32.1 2.7E+02 0.0058 33.1 9.6 32 749-780 389-420 (493)
324 PRK03918 chromosome segregatio 31.9 2.4E+02 0.0052 34.9 10.1 8 332-339 6-13 (880)
325 PRK04778 septation ring format 31.7 2E+02 0.0043 34.5 9.1 47 720-766 316-365 (569)
326 KOG4593 Mitotic checkpoint pro 31.7 4.6E+02 0.0099 32.7 11.8 17 782-798 148-164 (716)
327 PRK14141 heat shock protein Gr 31.6 1.3E+02 0.0027 32.1 6.6 60 717-779 34-94 (209)
328 PF07544 Med9: RNA polymerase 31.4 1.9E+02 0.0042 26.2 6.9 57 723-780 23-79 (83)
329 PRK14144 heat shock protein Gr 31.2 1.1E+02 0.0023 32.5 5.9 8 783-790 79-86 (199)
330 KOG0963 Transcription factor/C 31.2 1.6E+02 0.0036 35.9 8.1 59 720-781 284-342 (629)
331 PRK02119 hypothetical protein; 31.2 2.6E+02 0.0056 25.0 7.5 51 729-779 3-53 (73)
332 KOG0993 Rab5 GTPase effector R 31.1 1.3E+02 0.0029 35.1 7.0 55 726-780 119-182 (542)
333 PRK06231 F0F1 ATP synthase sub 31.0 3.2E+02 0.007 28.6 9.5 51 734-784 78-128 (205)
334 PRK01156 chromosome segregatio 30.9 2.2E+02 0.0048 35.5 9.6 20 188-209 25-44 (895)
335 COG4564 Signal transduction hi 30.9 83 0.0018 36.1 5.3 77 154-248 357-438 (459)
336 KOG4364 Chromatin assembly fac 30.9 1.5E+02 0.0032 36.6 7.6 22 749-770 333-354 (811)
337 PF12072 DUF3552: Domain of un 30.8 4E+02 0.0087 27.7 10.1 10 764-773 97-106 (201)
338 cd07624 BAR_SNX7_30 The Bin/Am 30.8 2E+02 0.0044 29.7 7.9 41 744-784 128-169 (200)
339 PLN02320 seryl-tRNA synthetase 30.8 1.4E+02 0.0029 35.8 7.3 19 723-741 69-87 (502)
340 PRK13729 conjugal transfer pil 30.7 1.2E+02 0.0025 36.1 6.7 18 723-740 71-88 (475)
341 PF00261 Tropomyosin: Tropomyo 30.7 4.1E+02 0.0089 28.2 10.3 66 723-788 143-222 (237)
342 PF12999 PRKCSH-like: Glucosid 30.6 1.1E+02 0.0024 31.9 5.8 22 749-770 153-174 (176)
343 KOG3859 Septins (P-loop GTPase 30.5 4.9E+02 0.011 29.6 10.9 41 723-763 321-362 (406)
344 TIGR00606 rad50 rad50. This fa 30.4 2.4E+02 0.0052 37.2 10.2 73 723-795 212-290 (1311)
345 PF10174 Cast: RIM-binding pro 30.4 2.4E+02 0.0052 35.5 9.6 78 722-799 309-389 (775)
346 PRK14158 heat shock protein Gr 30.3 1.5E+02 0.0033 31.1 6.9 54 723-779 49-103 (194)
347 PF10805 DUF2730: Protein of u 29.9 2.1E+02 0.0044 27.1 7.1 22 723-744 37-58 (106)
348 PF12777 MT: Microtubule-bindi 29.9 95 0.0021 34.7 5.7 56 723-778 216-271 (344)
349 PRK14151 heat shock protein Gr 29.8 1.2E+02 0.0027 31.2 6.1 60 718-780 24-84 (176)
350 PRK14154 heat shock protein Gr 29.7 1.5E+02 0.0032 31.7 6.7 58 720-780 58-116 (208)
351 COG4942 Membrane-bound metallo 29.7 3E+02 0.0065 32.3 9.6 30 751-780 212-241 (420)
352 PRK14070 exodeoxyribonuclease 29.7 57 0.0012 29.0 3.1 53 718-774 3-55 (69)
353 PRK13923 putative spore coat p 29.7 2E+02 0.0043 29.9 7.4 41 749-789 118-158 (170)
354 PF11802 CENP-K: Centromere-as 29.7 2.6E+02 0.0056 31.0 8.7 47 745-791 106-162 (268)
355 CHL00118 atpG ATP synthase CF0 29.7 3.9E+02 0.0086 26.5 9.4 46 734-779 52-97 (156)
356 PF06637 PV-1: PV-1 protein (P 29.6 2.5E+02 0.0054 32.7 8.7 57 719-775 290-348 (442)
357 PF02994 Transposase_22: L1 tr 29.6 1.3E+02 0.0027 34.4 6.6 27 753-779 141-167 (370)
358 PRK05431 seryl-tRNA synthetase 29.5 1.6E+02 0.0034 34.2 7.5 12 762-773 79-90 (425)
359 PF01025 GrpE: GrpE; InterPro 29.4 64 0.0014 31.8 3.8 57 720-779 17-74 (165)
360 PF01920 Prefoldin_2: Prefoldi 29.3 4.2E+02 0.0091 23.8 10.2 25 773-797 75-99 (106)
361 KOG3756 Pinin (desmosome-assoc 29.3 6.6E+02 0.014 28.7 11.7 76 721-796 125-211 (340)
362 PRK13169 DNA replication intia 29.2 1.9E+02 0.0041 28.0 6.8 12 733-744 6-17 (110)
363 KOG0963 Transcription factor/C 29.2 2.2E+02 0.0048 34.8 8.7 21 728-748 121-141 (629)
364 PRK14473 F0F1 ATP synthase sub 29.2 4E+02 0.0086 26.5 9.4 29 749-777 53-81 (164)
365 PF03961 DUF342: Protein of un 29.1 1.4E+02 0.0031 34.5 7.1 28 717-744 330-357 (451)
366 KOG3091 Nuclear pore complex, 29.1 1.3E+02 0.0028 35.8 6.6 12 787-798 410-421 (508)
367 PF15070 GOLGA2L5: Putative go 29.0 2.7E+02 0.0059 34.1 9.6 37 749-785 160-196 (617)
368 PRK14143 heat shock protein Gr 28.9 1.6E+02 0.0034 32.0 6.9 54 723-779 76-130 (238)
369 PF08687 ASD2: Apx/Shroom doma 28.8 1.8E+02 0.004 32.0 7.4 50 731-780 157-218 (264)
370 TIGR03495 phage_LysB phage lys 28.7 4.9E+02 0.011 26.1 9.7 50 726-775 17-66 (135)
371 KOG4603 TBP-1 interacting prot 28.6 2.3E+02 0.0049 29.8 7.5 67 695-771 54-124 (201)
372 PF10211 Ax_dynein_light: Axon 28.6 4.9E+02 0.011 27.1 10.1 23 776-798 165-187 (189)
373 KOG0243 Kinesin-like protein [ 28.5 2.3E+02 0.005 36.7 9.1 23 721-743 404-426 (1041)
374 PF10168 Nup88: Nuclear pore c 28.2 2.9E+02 0.0063 34.4 9.8 29 749-777 586-614 (717)
375 PF06156 DUF972: Protein of un 28.1 2.1E+02 0.0045 27.4 6.8 50 745-798 3-53 (107)
376 PF08581 Tup_N: Tup N-terminal 27.9 4.7E+02 0.01 23.9 8.8 70 720-792 3-75 (79)
377 PF07246 Phlebovirus_NSM: Phle 27.8 1.6E+02 0.0034 32.6 6.6 19 523-541 40-58 (264)
378 KOG0982 Centrosomal protein Nu 27.6 2.5E+02 0.0054 33.2 8.4 16 720-735 303-318 (502)
379 KOG4005 Transcription factor X 27.6 2.9E+02 0.0063 30.3 8.4 23 750-772 126-148 (292)
380 PRK08475 F0F1 ATP synthase sub 27.5 4.4E+02 0.0096 26.6 9.5 48 733-780 51-98 (167)
381 PRK07353 F0F1 ATP synthase sub 27.5 4.9E+02 0.011 24.9 9.4 44 734-777 35-78 (140)
382 PF07544 Med9: RNA polymerase 27.3 1.9E+02 0.0042 26.2 6.2 49 717-766 6-55 (83)
383 PF06160 EzrA: Septation ring 27.1 2.2E+02 0.0048 34.1 8.4 31 753-783 376-406 (560)
384 PF05837 CENP-H: Centromere pr 26.8 2.3E+02 0.0049 26.8 6.8 58 723-780 19-82 (106)
385 PF10146 zf-C4H2: Zinc finger- 26.7 2.7E+02 0.0059 30.0 8.2 16 773-788 66-81 (230)
386 KOG4571 Activating transcripti 26.7 6.6E+02 0.014 28.3 11.1 65 722-786 227-292 (294)
387 PF01576 Myosin_tail_1: Myosin 26.6 22 0.00047 44.6 0.0 86 707-798 20-112 (859)
388 PF09728 Taxilin: Myosin-like 26.5 3.5E+02 0.0076 30.2 9.3 46 749-798 251-296 (309)
389 PRK06569 F0F1 ATP synthase sub 26.4 4.3E+02 0.0094 27.0 9.1 12 733-744 39-50 (155)
390 PRK05759 F0F1 ATP synthase sub 26.4 5E+02 0.011 25.3 9.4 29 749-777 49-77 (156)
391 PF05384 DegS: Sensor protein 26.2 5.9E+02 0.013 26.1 10.0 27 719-745 18-44 (159)
392 smart00787 Spc7 Spc7 kinetocho 26.2 3.1E+02 0.0067 30.8 8.8 12 385-396 10-21 (312)
393 PF13094 CENP-Q: CENP-Q, a CEN 26.0 1.6E+02 0.0035 29.2 6.0 37 732-768 45-81 (160)
394 PF11853 DUF3373: Protein of u 25.9 53 0.0012 38.9 3.0 37 757-799 32-68 (489)
395 PRK14155 heat shock protein Gr 25.7 1.8E+02 0.004 30.8 6.6 64 714-780 13-77 (208)
396 PF11068 YlqD: YlqD protein; 25.7 4.4E+02 0.0096 26.2 8.8 27 772-798 58-84 (131)
397 PF07407 Seadorna_VP6: Seadorn 25.6 1.4E+02 0.0029 34.1 5.8 47 725-773 43-90 (420)
398 PRK14139 heat shock protein Gr 25.6 2E+02 0.0044 30.0 6.8 57 720-779 38-95 (185)
399 PF11014 DUF2852: Protein of u 25.6 1.1E+02 0.0023 30.0 4.4 27 764-790 79-105 (115)
400 COG4741 Predicted secreted end 25.4 3.9E+02 0.0085 27.7 8.4 51 722-773 16-66 (175)
401 PF08826 DMPK_coil: DMPK coile 25.4 3.5E+02 0.0075 23.7 7.0 24 745-768 35-58 (61)
402 KOG4674 Uncharacterized conser 25.4 2.8E+02 0.0061 38.0 9.4 73 723-798 807-882 (1822)
403 PRK10636 putative ABC transpor 25.4 1.6E+02 0.0034 35.7 6.9 30 750-779 599-628 (638)
404 PRK14064 exodeoxyribonuclease 25.3 1.2E+02 0.0025 27.4 4.3 51 718-772 14-64 (75)
405 PF02388 FemAB: FemAB family; 25.2 1.3E+02 0.0029 34.3 5.9 45 722-770 250-294 (406)
406 PRK10476 multidrug resistance 25.0 4.1E+02 0.0089 29.3 9.5 27 712-738 77-103 (346)
407 cd07605 I-BAR_IMD Inverse (I)- 25.0 2.9E+02 0.0063 29.6 7.9 18 771-788 172-189 (223)
408 TIGR01280 xseB exodeoxyribonuc 24.9 1.2E+02 0.0026 26.6 4.3 50 718-771 9-58 (67)
409 CHL00019 atpF ATP synthase CF0 24.7 5.1E+02 0.011 26.3 9.5 45 734-778 54-98 (184)
410 PF10174 Cast: RIM-binding pro 24.6 2.5E+02 0.0055 35.3 8.4 31 760-790 433-463 (775)
411 PRK06568 F0F1 ATP synthase sub 24.6 4.6E+02 0.01 26.7 8.9 16 759-774 59-74 (154)
412 TIGR01554 major_cap_HK97 phage 24.5 3.2E+02 0.007 30.6 8.7 13 723-735 8-20 (378)
413 PF08172 CASP_C: CASP C termin 24.4 2.1E+02 0.0045 31.1 6.9 11 734-744 92-102 (248)
414 PF02841 GBP_C: Guanylate-bind 24.4 4.3E+02 0.0093 28.9 9.4 22 512-533 96-117 (297)
415 PF10779 XhlA: Haemolysin XhlA 24.2 4.3E+02 0.0092 23.2 7.6 51 725-775 3-53 (71)
416 PF14662 CCDC155: Coiled-coil 24.2 2.3E+02 0.0049 30.1 6.8 41 749-789 109-162 (193)
417 PF01025 GrpE: GrpE; InterPro 24.1 2.4E+02 0.0052 27.8 6.8 24 722-745 12-35 (165)
418 PF14197 Cep57_CLD_2: Centroso 24.1 5.1E+02 0.011 23.0 8.1 54 719-775 3-59 (69)
419 PF06936 Selenoprotein_S: Sele 23.8 2.7E+02 0.0058 29.3 7.3 29 768-798 92-120 (190)
420 PF05701 WEMBL: Weak chloropla 23.8 3.6E+02 0.0077 32.2 9.2 76 722-798 173-259 (522)
421 PF11594 Med28: Mediator compl 23.7 1.4E+02 0.0031 28.8 4.8 37 726-762 40-76 (106)
422 PRK14474 F0F1 ATP synthase sub 23.6 4.9E+02 0.011 28.1 9.5 45 735-779 36-80 (250)
423 PF05546 She9_MDM33: She9 / Md 23.5 6.4E+02 0.014 27.1 9.9 45 754-798 104-148 (207)
424 PRK09841 cryptic autophosphory 23.5 4.3E+02 0.0092 32.7 10.1 54 722-775 268-330 (726)
425 TIGR01005 eps_transp_fam exopo 23.5 2.1E+02 0.0046 35.1 7.5 7 723-729 290-296 (754)
426 PRK14162 heat shock protein Gr 23.5 2.4E+02 0.0051 29.8 6.8 57 720-779 45-102 (194)
427 PRK14472 F0F1 ATP synthase sub 23.5 5.8E+02 0.013 25.7 9.5 45 734-778 48-92 (175)
428 PRK14147 heat shock protein Gr 23.4 2.3E+02 0.0049 29.2 6.6 58 719-779 23-81 (172)
429 PF07946 DUF1682: Protein of u 23.3 3E+02 0.0064 30.7 8.0 59 732-791 255-314 (321)
430 KOG1899 LAR transmembrane tyro 23.2 3.2E+02 0.007 33.8 8.5 73 725-797 178-261 (861)
431 PRK14068 exodeoxyribonuclease 23.1 1.4E+02 0.0031 27.0 4.5 50 718-771 14-63 (76)
432 PRK06342 transcription elongat 22.8 92 0.002 31.6 3.6 46 722-767 35-82 (160)
433 PF11214 Med2: Mediator comple 22.8 5.5E+02 0.012 24.9 8.5 53 731-790 48-103 (105)
434 COG4942 Membrane-bound metallo 22.8 4.4E+02 0.0096 31.0 9.4 31 757-787 225-255 (420)
435 PRK00977 exodeoxyribonuclease 22.7 1.2E+02 0.0027 27.4 4.1 50 718-771 18-67 (80)
436 PRK02793 phi X174 lysis protei 22.7 4.6E+02 0.0099 23.4 7.5 49 731-779 4-52 (72)
437 PF00261 Tropomyosin: Tropomyo 22.7 7.2E+02 0.016 26.4 10.4 10 749-758 155-164 (237)
438 PRK14155 heat shock protein Gr 22.6 2.8E+02 0.006 29.5 7.2 35 729-763 14-48 (208)
439 KOG1103 Predicted coiled-coil 22.6 3.7E+02 0.0081 31.0 8.4 36 754-789 144-186 (561)
440 PRK04863 mukB cell division pr 22.5 4.1E+02 0.0089 35.9 10.1 28 503-530 192-222 (1486)
441 KOG0163 Myosin class VI heavy 22.5 2.5E+02 0.0054 35.4 7.5 11 486-496 689-699 (1259)
442 PRK14148 heat shock protein Gr 22.4 2.6E+02 0.0056 29.5 6.9 23 722-744 48-70 (195)
443 KOG3433 Protein involved in me 22.4 4.5E+02 0.0097 28.0 8.4 40 733-772 79-118 (203)
444 KOG0245 Kinesin-like protein [ 22.4 3.2E+02 0.007 35.5 8.6 40 731-770 596-636 (1221)
445 COG2865 Predicted transcriptio 22.3 92 0.002 36.8 3.9 70 151-230 269-351 (467)
446 PRK14067 exodeoxyribonuclease 22.1 1.1E+02 0.0024 27.9 3.7 49 718-770 15-63 (80)
447 PRK10361 DNA recombination pro 21.9 5.4E+02 0.012 30.8 10.0 38 749-786 60-97 (475)
448 PRK11091 aerobic respiration c 21.9 5E+02 0.011 31.6 10.2 48 746-793 100-150 (779)
449 KOG4031 Vesicle coat protein c 21.9 5.9E+02 0.013 27.5 9.3 18 759-776 150-167 (216)
450 KOG0240 Kinesin (SMY1 subfamil 21.9 4.2E+02 0.0091 32.4 9.1 76 722-798 404-487 (607)
451 PF08654 DASH_Dad2: DASH compl 21.8 2.9E+02 0.0062 26.4 6.4 48 733-780 2-52 (103)
452 PRK14160 heat shock protein Gr 21.8 4.7E+02 0.01 28.0 8.7 42 722-763 55-96 (211)
453 TIGR03321 alt_F1F0_F0_B altern 21.7 5.7E+02 0.012 27.3 9.5 45 733-777 34-78 (246)
454 PF04102 SlyX: SlyX; InterPro 21.7 3.8E+02 0.0082 23.5 6.8 45 733-777 2-46 (69)
455 KOG2070 Guanine nucleotide exc 21.7 1.7E+02 0.0037 35.1 5.8 139 592-758 509-653 (661)
456 PRK13455 F0F1 ATP synthase sub 21.5 6.5E+02 0.014 25.6 9.4 48 731-778 54-101 (184)
457 PF08653 DASH_Dam1: DASH compl 21.5 1.9E+02 0.0041 25.1 4.7 31 750-781 6-36 (58)
458 PF00509 Hemagglutinin: Haemag 21.5 54 0.0012 39.3 1.9 74 722-798 372-451 (550)
459 PF03961 DUF342: Protein of un 21.5 2E+02 0.0043 33.3 6.4 10 199-208 25-34 (451)
460 PF06717 DUF1202: Protein of u 21.4 2.5E+02 0.0054 31.5 6.7 61 712-774 117-177 (308)
461 PF06818 Fez1: Fez1; InterPro 21.0 4.7E+02 0.01 27.9 8.4 18 780-797 72-89 (202)
462 PF15397 DUF4618: Domain of un 21.0 4.4E+02 0.0095 29.1 8.5 62 722-783 64-147 (258)
463 KOG2751 Beclin-like protein [S 20.9 3.3E+02 0.0071 32.2 7.8 21 615-635 69-89 (447)
464 PF13870 DUF4201: Domain of un 20.9 2.7E+02 0.0059 28.1 6.5 15 784-798 155-169 (177)
465 KOG4403 Cell surface glycoprot 20.9 2.2E+02 0.0047 33.7 6.3 52 723-774 254-327 (575)
466 PF09730 BicD: Microtubule-ass 20.9 2.7E+02 0.0058 34.8 7.5 22 723-744 368-389 (717)
467 PRK14161 heat shock protein Gr 20.9 2.6E+02 0.0057 29.0 6.5 54 723-779 28-82 (178)
468 COG1510 Predicted transcriptio 20.9 3.1E+02 0.0066 28.8 6.8 65 724-789 100-164 (177)
469 PF00901 Orbi_VP5: Orbivirus o 20.8 6.2E+02 0.013 30.5 10.0 90 706-795 70-172 (508)
470 PF09727 CortBP2: Cortactin-bi 20.7 5.6E+02 0.012 27.2 8.9 41 745-788 140-180 (192)
471 PF15619 Lebercilin: Ciliary p 20.7 6.8E+02 0.015 26.3 9.5 78 719-796 73-165 (194)
472 PRK11578 macrolide transporter 20.6 2.6E+02 0.0057 31.1 7.0 43 713-755 91-136 (370)
473 PRK13453 F0F1 ATP synthase sub 20.6 7.1E+02 0.015 25.2 9.4 29 749-777 63-91 (173)
474 PF09730 BicD: Microtubule-ass 20.5 4.8E+02 0.01 32.7 9.5 68 720-787 75-173 (717)
475 PF15066 CAGE1: Cancer-associa 20.4 5.6E+02 0.012 30.7 9.5 76 723-798 406-516 (527)
476 PRK14157 heat shock protein Gr 20.4 2.6E+02 0.0057 30.2 6.6 59 718-779 81-140 (227)
477 PRK10869 recombination and rep 20.4 3.5E+02 0.0077 32.4 8.3 47 743-789 328-374 (553)
478 PTZ00454 26S protease regulato 20.3 2.4E+02 0.0051 32.5 6.6 45 731-775 18-62 (398)
479 TIGR03545 conserved hypothetic 20.3 2.7E+02 0.0059 33.6 7.3 15 727-741 190-204 (555)
480 TIGR01144 ATP_synt_b ATP synth 20.2 7.9E+02 0.017 23.7 9.4 42 735-776 26-67 (147)
481 PF08700 Vps51: Vps51/Vps67; 20.1 4.5E+02 0.0098 23.0 7.1 53 723-775 21-84 (87)
482 PRK09343 prefoldin subunit bet 20.0 2.5E+02 0.0055 27.1 5.8 40 731-770 74-113 (121)
483 cd00632 Prefoldin_beta Prefold 20.0 2.1E+02 0.0045 26.6 5.1 41 730-770 65-105 (105)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-68 Score=614.18 Aligned_cols=617 Identities=41% Similarity=0.603 Sum_probs=470.4
Q ss_pred cccccccchhhhhhcccCCCCCCCCCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcCCceeEEEE
Q 003718 100 KAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDM 179 (800)
Q Consensus 100 ~~~~~~~~~~~~fwkag~y~~~~~~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~gAt~V~Idi 179 (800)
.++++.+..|+||||||+|..++.....+..++.+|+++||+|||+|+|+|+|.++|++||||||+|.+.++|+.+.|+.
T Consensus 94 ~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~ 173 (775)
T KOG1845|consen 94 FAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDY 173 (775)
T ss_pred cccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeee
Confidence 46688889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEccCCC-ceeEEEE-----ECCCCCCHHhHHHhhhcCccccccCCcccCcccccccccccccCCeEEEEeeecCCCCCC
Q 003718 180 LINRKDG-SRMLLIE-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKS 253 (800)
Q Consensus 180 ~~~~~~g-~~~L~I~-----DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~dg~~ 253 (800)
+....+. .+.++|+ |||+||.++-+..||.+|+++|..-...+|+||+||+++.|++|.+++|++|..+..|..
T Consensus 174 I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~k 253 (775)
T KOG1845|consen 174 INPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLK 253 (775)
T ss_pred ecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCC
Confidence 7654444 6777777 679999999999999999999986678999999999999999999999999988778889
Q ss_pred CeEEeeecceeeeccCCCCceEecc----cccccchhhhHHHhhcchhhhhhhHHH-----hhhcCCCCCHHHHHHH---
Q 003718 254 PTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNVET-----IVQWSPFSSEADLLHQ--- 321 (800)
Q Consensus 254 ~t~SvglLS~tfL~~~g~ddIiVPm----~~we~~~~~~~~~i~~~~~dw~~nL~i-----IlkySPF~te~eLl~Q--- 321 (800)
.++++|+|||+||+.++.+|++||| .+++...+.|..++..+..+|..|+.+ +++|+||.++.+++.|
T Consensus 254 stqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v 333 (775)
T KOG1845|consen 254 STQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSV 333 (775)
T ss_pred cceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhh
Confidence 9999999999999999999999999 888887788888888888999999998 9999999999999999
Q ss_pred ------------HhhccCCceEEEEEcc--cccCCCceeccCCCCccceecccCcchhhhhhhhccCCCCcchhhhhhhH
Q 003718 322 ------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSL 387 (800)
Q Consensus 322 ------------fd~Ig~~GTrIII~NL--~~~~~G~~ELDFdtD~~DI~i~~~~~d~k~~q~a~~~p~~~h~~~~r~SL 387 (800)
|+.+..+||.||+||+ |..+.|.+|+||+.++++|.. .+.+++
T Consensus 334 ~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-----------------------~~~~~~ 390 (775)
T KOG1845|consen 334 QYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-----------------------TYCHSH 390 (775)
T ss_pred hhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-----------------------cchhhh
Confidence 8888999999999999 999999999999999999862 234788
Q ss_pred HHHHHhhhccCCCceEEEEcCeeecccccccccccccceeccccCCCCCCCCcccceEEEEEeeeccCcccccccceEEE
Q 003718 388 RSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVY 467 (800)
Q Consensus 388 RaYLSILYLr~pprfkIiLrGkkVe~~ni~~dL~~~e~v~YrPq~~~~~lP~~~n~~v~itIGf~k~a~~~~~~qGf~VY 467 (800)
+.|.+|||+..+++|+++++|+.+.|+.+..+++..+.+.|+|+......+ ...+......||.+.+++++++++++||
T Consensus 391 ~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~nV~ 469 (775)
T KOG1845|consen 391 LSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QRLIKLSPKPGFVKDAPRPIDVQQFNVS 469 (775)
T ss_pred hhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-chhhcccCCCCcccccCCCCCccCCccc
Confidence 999999999999999999999999999999999999989999985432211 1123445678999999999999999999
Q ss_pred ecCccch----hhhhhccCCCCCCcceeeeeeccccCCCCcccchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCc
Q 003718 468 HKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRY 543 (800)
Q Consensus 468 hkNRLIk----~yerVg~~~~s~GrGVIGVlEanfLePtHnKQDFe~t~ly~rLe~~L~q~l~~YW~~~~~~iGy~~~~~ 543 (800)
|++|||+ |||+.++..++.++++++++.+||.+|+|++|||+.+...++++.++.++++.||...|++|+|.....
T Consensus 470 ~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~ 549 (775)
T KOG1845|consen 470 HGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQL 549 (775)
T ss_pred cCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhh
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cccccc--ccccccCCCCCCCCCcccCCCCCCCcccccccccccccCCCCCCccccCCCCCCcccCcccccccCCccccC
Q 003718 544 KKYIKD--SYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYRE 621 (800)
Q Consensus 544 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (800)
.+..+. .+.+|..| +.. ..+ ....-|+ . .+.........++. +.
T Consensus 550 ~~~~~~~~~~~Ke~~~--~~~-----~~~-~~~~~~~-------------~---------~~~~~~~~~~~~~~--~~-- 595 (775)
T KOG1845|consen 550 QKERESTTTVVKEEKP--ENN-----HLS-SSKRTQR-------------R---------KSTGRAISVAVEKF--NL-- 595 (775)
T ss_pred hhhhcccceeeccccc--ccc-----hhc-chhcccc-------------c---------cccccccccchhhh--cc--
Confidence 655533 22223322 321 000 0000000 0 00000000000111 00
Q ss_pred CccccCCCCCCCCCCCcccccccccccCCCCCcccccccccccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 003718 622 GASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQ 701 (800)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (800)
++...|.+ +..+|+.-. .+....+..-.+..+. ..++.--.+..-+ ..|.||+.---++.. .+
T Consensus 596 -~~~~~~~~--------~~~~v~sq~---~~~~~e~e~~k~~~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~e~~---~~ 658 (775)
T KOG1845|consen 596 -RSGPNGRG--------QIDMVESQE---TPLLKEVERLKKKRRR-AALALEVQSSKNE-EEQSDDDEDSLNEVR---RK 658 (775)
T ss_pred -ccccCCcC--------Ccccccccc---chhhhHHHHhhhhhhh-hhhhhhhccccch-hhhhccchhhhhHHh---hh
Confidence 01111111 000100000 0000000000000000 0000000011111 125555554222111 11
Q ss_pred CCCcccCCCCCcccccccchhhhhhhhhchHHHHHHHHhHHh-------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718 702 SKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGE-------LQEERERCRSLEAQLKVMQQTIEELNKEQES 774 (800)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~ 774 (800)
+-.-..+. .. .+.|-+|++.+.+.-+++.....- +.++++..+.|+.++++...+|..+.+.|.+
T Consensus 659 ~~~~~~~~-----~~---~~~~~~l~~~~~~~l~~~~~~~~t~~~q~~~~n~~~~~~~~~~~~~k~~~n~l~~~~~~~~s 730 (775)
T KOG1845|consen 659 SAKLKSEQ-----KQ---KKTLVELEETRKKWLRSMLNQSLTAGEQLKSLNQQEDFDKTLEVELKESRNKLQNLRNKLQS 730 (775)
T ss_pred ccccchhh-----cc---cHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHh
Confidence 10000111 11 234777777777777766554332 4555688999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhcc
Q 003718 775 LIDIFAEERDRREREEENLRKKIKI 799 (800)
Q Consensus 775 li~~f~eer~~~~~e~~~l~~kl~~ 799 (800)
+.+.|..||.+|+.||..+|.||.|
T Consensus 731 ~~~~~~~~~~~~~~e~~l~~~k~~~ 755 (775)
T KOG1845|consen 731 LADMFIQERADRDKEEDLQRFKLPV 755 (775)
T ss_pred cchhhhhHHHhhhhhhhhhhhcccc
Confidence 9999999999999999999999976
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.1e-26 Score=261.42 Aligned_cols=273 Identities=24% Similarity=0.320 Sum_probs=212.6
Q ss_pred eEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccccccccCCeEEEEeeecCCCCCCCeEEeeecceeeecc
Q 003718 189 MLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRS 268 (800)
Q Consensus 189 ~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~dg~~~t~SvglLS~tfL~~ 268 (800)
||++.|||.||+++++..+..|+.. ...||+||+|+|+++|++|++++++|+..+ +++++++|++|++.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~~-----~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~------~~s~~~~sqt~~e~ 69 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAVG-----LYGIGDYGNGLKSGSMRIGKDFILFTKKES------TMSCLFLSQTFHES 69 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhccc-----ccccccccCcccccccccCcccceeecccc------ccceeeeecccccc
Confidence 5889999999999999999988433 457999999999999999999999999754 59999999999999
Q ss_pred CCCCceEecccccccchhhhHHHhhcchhhhhhhHHHhhhcCCCCCHHHHHHHHhhc-cCCc-eEEEEEcccccCCCcee
Q 003718 269 TGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLM-KDHG-TRIIIYNLWEDDQGLLE 346 (800)
Q Consensus 269 ~g~ddIiVPm~~we~~~~~~~~~i~~~~~dw~~nL~iIlkySPF~te~eLl~Qfd~I-g~~G-TrIII~NL~~~~~G~~E 346 (800)
+..+.++||++.|+..... ++ .+.+..+|++|+.+|||.+++.++.++++| +..| |.+||+|+++...|.++
T Consensus 70 ~~~~~vvvP~~t~~~~~~~---~~---~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnats 143 (775)
T KOG1845|consen 70 EADDAVVVPCPTFNPRTRE---IV---TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATS 143 (775)
T ss_pred cccccceeccccccccccc---cc---ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcc
Confidence 9999999999999976543 22 266788899999999999999999999988 4555 99999999999999999
Q ss_pred ccCCCCccceecccCcchhhhhhhhccCCCCcchhhhhhhHHHHHHhhhccCCCceEEEEcCeeeccccccccc--cccc
Q 003718 347 LDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDM--MLSK 424 (800)
Q Consensus 347 LDFdtD~~DI~i~~~~~d~k~~q~a~~~p~~~h~~~~r~SLRaYLSILYLr~pprfkIiLrGkkVe~~ni~~dL--~~~e 424 (800)
++|..|+.||++.++. |+ ++ .+. .|+.++|+. |+|.|++++..|++.++..+. |.++
T Consensus 144 hk~a~~a~aeLldnal-DE--------i~-------~~~---tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~~~~~ 202 (775)
T KOG1845|consen 144 HKWAKGAIAELLDNAL-DE--------IT-------NGA---TFVRVDYIN--PVMDIFIRALVVQLKRISDDGGGMKPE 202 (775)
T ss_pred cccccChhhhhccccc-cc--------cc-------ccc---ceEEeeeec--ccccccceeEEeeccceeccccccCHH
Confidence 9999999999996543 21 11 223 458999997 999999999999998876653 1112
Q ss_pred ceeccccCCCCCCCCccc-ceEEEEEeeeccCcccccccceEEEecCccchhhhhhccCCCCCCcceeeeeeccccCCCC
Q 003718 425 KVTYRPQPGASGIPTDLH-MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAH 503 (800)
Q Consensus 425 ~v~YrPq~~~~~lP~~~n-~~v~itIGf~k~a~~~~~~qGf~VYhkNRLIk~yerVg~~~~s~GrGVIGVlEanfLePtH 503 (800)
.+ -+....+-.-....+ .+.+...||.+.... -|..+|+-+|.- ...+..+.+.||+|..+||++|+
T Consensus 203 ~i-~~~m~l~~~~k~e~~~tv~q~~~gfktst~r----lGa~~i~~~R~~-------~~~~~kstqsiglls~tfL~~t~ 270 (775)
T KOG1845|consen 203 VI-RKCMSLGYSSKKEANSTVGQYGNGFKTSTMR----LGADAIVFSRCE-------SRRGLKSTQSIGLLSYTFLRKTG 270 (775)
T ss_pred HH-HHHHHhhhhhhhhhhhhhhhhccccccchhh----hccceeEeehhh-------hhccCCcceeEEEEEEeeecccc
Confidence 11 111100000000111 223445777765543 599999999971 23466778999999999999999
Q ss_pred cccchhhhH
Q 003718 504 DKQGFERTT 512 (800)
Q Consensus 504 nKQDFe~t~ 512 (800)
|+||-...
T Consensus 271 -~~d~iv~~ 278 (775)
T KOG1845|consen 271 -KRDFIVPM 278 (775)
T ss_pred -CCceeEec
Confidence 99998765
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.76 E-value=4.1e-18 Score=196.93 Aligned_cols=114 Identities=27% Similarity=0.470 Sum_probs=90.0
Q ss_pred CCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-------------CCceeEEEEEEccCCCceeE
Q 003718 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (800)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L 190 (800)
..||+++.++..+.+|.-| ++...| |+|||.||+||+.+ ++....|.|..+. +...|
T Consensus 6 ~~Fq~e~~~ll~ll~~~LY------s~~~v~--lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i 75 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLY------SNKEIF--LRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTL 75 (613)
T ss_pred eehhHhHHHHHHHHhhhhc------CCchHH--HHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeE
Confidence 4599999999999999888 666665 99999999999753 2344566665543 33469
Q ss_pred EEEECCCCCCHHhHHHhh-hcCccccc-----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 003718 191 LIEDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 191 ~I~DNG~GM~~eeL~~~L-sfG~SsK~-----------~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
.|.|||+||+.++|..++ .+|+|.+. .....||+||+||++++| +|++|+|.||+.+
T Consensus 76 ~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~ 144 (613)
T PRK05218 76 TISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAG 144 (613)
T ss_pred EEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCC
Confidence 999999999999999855 57877421 135689999999987655 8999999999865
No 4
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.2e-17 Score=190.83 Aligned_cols=131 Identities=27% Similarity=0.422 Sum_probs=105.0
Q ss_pred CCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-------------CCceeEEEEEEccCCCceeE
Q 003718 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (800)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L 190 (800)
..||++++++.++++|.-| |++.+| |+|||.||.||+++ +...++|.+..++ ...+|
T Consensus 7 ~~Fq~ev~~ll~lmihSlY------SnKeIF--LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk--~~kTL 76 (623)
T COG0326 7 RGFQAEVKQLLDLMIHSLY------SNKEIF--LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDK--DNKTL 76 (623)
T ss_pred hhhhHHHHHHHHHHHHhcc------CCcHHH--HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcc--cCCEE
Confidence 3599999999999999999 999999 99999999999976 1235677777665 46799
Q ss_pred EEEECCCCCCHHhHHHhhh-cCccccc----------cCCcccCcccccccccccccCCeEEEEeeecCCCCCCCeEEee
Q 003718 191 LIEDNGGGMNPDKMRHCMS-LGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIG 259 (800)
Q Consensus 191 ~I~DNG~GM~~eeL~~~Ls-fG~SsK~----------~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~dg~~~t~Svg 259 (800)
+|.|||+||+.+|++..|. ++.|... ++...|||||+||+|||| ++.+|+|+||+.|.+....|-|-|
T Consensus 77 tI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~~W~S~g 155 (623)
T COG0326 77 TISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAYHWESDG 155 (623)
T ss_pred EEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcceEEEEcC
Confidence 9999999999999999763 4444321 235569999999999999 999999999999865444566666
Q ss_pred ecceee
Q 003718 260 LLSYTF 265 (800)
Q Consensus 260 lLS~tf 265 (800)
-=.||.
T Consensus 156 ~g~ytv 161 (623)
T COG0326 156 EGEYTV 161 (623)
T ss_pred CCceEE
Confidence 555544
No 5
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=1.1e-17 Score=158.79 Aligned_cols=92 Identities=37% Similarity=0.613 Sum_probs=79.4
Q ss_pred HHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCcccccc--CCcccCcccccccc
Q 003718 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK--AANTIGQYGNGFKT 231 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~--~~~~IGrfG~GfKs 231 (800)
..||+|||+||+|| .|+.|.|.+.... .+...|+|.|||.||++++|..++.+|.+++.. ....+|+||+|+|.
T Consensus 4 ~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHH
Confidence 47999999999999 7899999997754 466899999999999999999999999998852 46789999999999
Q ss_pred cccccCCeEEEEeeecCC
Q 003718 232 STMRLGADVIVFSCCCGK 249 (800)
Q Consensus 232 AsmrLG~~V~V~SK~~g~ 249 (800)
|++.+|+.+.|+|++.+.
T Consensus 80 A~~~~~~~~~v~S~~~~~ 97 (137)
T PF13589_consen 80 AIFSLGDRVEVISKTNGE 97 (137)
T ss_dssp GGGGTEEEEEEEEESTTS
T ss_pred HHHHhcCEEEEEEEECCC
Confidence 999999999999999864
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.65 E-value=3.4e-16 Score=180.60 Aligned_cols=113 Identities=21% Similarity=0.415 Sum_probs=89.9
Q ss_pred CCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcC-------CceeEEEEEEccCCCceeEEEEECC
Q 003718 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNG 196 (800)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~g-------At~V~Idi~~~~~~g~~~L~I~DNG 196 (800)
..||+++.++.++..+.-| ++.+.| |+|||.||+||+..- ...|.|.+. + .+...|.|.|||
T Consensus 3 ~~Fqae~~~ll~ll~~~LY------s~~~if--lrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnG 71 (601)
T PRK14083 3 HRFQVDLRGVIDLLSRHLY------SSPRVY--VRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNG 71 (601)
T ss_pred ccchHhHHHHHHHHHHhhc------CCcHHH--HHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCC
Confidence 3589999999998888888 666655 999999999997531 114555542 2 346789999999
Q ss_pred CCCCHHhHHHh-hhcCcccccc------CCcccCcccccccccccccCCeEEEEeeecC
Q 003718 197 GGMNPDKMRHC-MSLGYSAKSK------AANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 197 ~GM~~eeL~~~-LsfG~SsK~~------~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
.||+.+++.+. +.+|.|.+.. ....||+||+||++++| +|..|.|.||..+
T Consensus 72 iGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~ 129 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK 129 (601)
T ss_pred CCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC
Confidence 99999999985 5799888743 23579999999998877 9999999999864
No 7
>PTZ00130 heat shock protein 90; Provisional
Probab=99.57 E-value=1.6e-15 Score=178.40 Aligned_cols=131 Identities=21% Similarity=0.334 Sum_probs=101.8
Q ss_pred CccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 003718 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (800)
Q Consensus 125 ~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (800)
.||+++.++.++.+|.-| |++.+| |+|||.||+||+++ ....+.|.|..+. ....|+
T Consensus 69 ~FQaEv~~Lldiii~sLY------S~keIF--LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~--~~~tLt 138 (814)
T PTZ00130 69 QYQTEVTRLMDIIVNSLY------TQKEVF--LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILS 138 (814)
T ss_pred ehHHHHHHHHHHHhhccC------CCCCce--eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECC--CCCEEE
Confidence 599999999999999999 889988 99999999999863 1235677776553 356899
Q ss_pred EEECCCCCCHHhHHHhh-hcCccccc----------cCCcccCcccccccccccccCCeEEEEeeecCCCCCCCeEEeee
Q 003718 192 IEDNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGL 260 (800)
Q Consensus 192 I~DNG~GM~~eeL~~~L-sfG~SsK~----------~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~dg~~~t~Svgl 260 (800)
|.|||+||+.++|.+.| .+++|... .....|||||+||+++|| +|.+|+|+||+.+..+ ..|-|-|-
T Consensus 139 I~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~~~~-~~W~s~g~ 216 (814)
T PTZ00130 139 ITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNNDEQ-YIWESTAD 216 (814)
T ss_pred EEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCCCce-EEEEECCC
Confidence 99999999999999854 46665421 124689999999999998 9999999999876432 34555555
Q ss_pred cceeeec
Q 003718 261 LSYTFLR 267 (800)
Q Consensus 261 LS~tfL~ 267 (800)
-+|+.-.
T Consensus 217 g~y~I~e 223 (814)
T PTZ00130 217 AKFTIYK 223 (814)
T ss_pred CcEEEEE
Confidence 5555444
No 8
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.52 E-value=1e-14 Score=170.69 Aligned_cols=113 Identities=21% Similarity=0.334 Sum_probs=92.4
Q ss_pred CccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 003718 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (800)
Q Consensus 125 ~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (800)
.||+++++|.++.+|+-| |++..| |+|||.||.||+.+ ....+.|.+..+. ....|.
T Consensus 6 ~Fqae~~~Ll~lli~slY------s~~~if--lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~L~ 75 (701)
T PTZ00272 6 AFQAEINQLMSLIINTFY------SNKEIF--LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDK--ENKTLT 75 (701)
T ss_pred ecHHHHHHHHHHHHhccc------CCccHh--HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcC--CCCEEE
Confidence 599999999999999999 899988 99999999999864 1234567776553 346899
Q ss_pred EEECCCCCCHHhHHHhh-hcCccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 003718 192 IEDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 192 I~DNG~GM~~eeL~~~L-sfG~SsK~---------~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
|.|||.||+.++|.+.| .+|.|... .+...||+||+||++++| +|.+|.|.||+.+
T Consensus 76 I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~ 141 (701)
T PTZ00272 76 VEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNS 141 (701)
T ss_pred EEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCC
Confidence 99999999999999865 46655321 124589999999999988 9999999999865
No 9
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.35 E-value=1.2e-11 Score=143.84 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=77.1
Q ss_pred cccccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccC------Ccc
Q 003718 148 TSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANT 221 (800)
Q Consensus 148 tsHkwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~------~~~ 221 (800)
..-..|.++|.|||+||+|| ||+.|.|.+.. +|...|.|.|||.||+++++..++..++++|... ...
T Consensus 18 evI~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t 91 (617)
T PRK00095 18 EVVERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRT 91 (617)
T ss_pred CcccCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhcccc
Confidence 44588999999999999999 99999999954 4678999999999999999999888777777543 246
Q ss_pred cCcccccccccccccCCeEEEEeeecC
Q 003718 222 IGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 222 IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
.|..|.|+.+ +...++++|.||+.+
T Consensus 92 ~GfrGeAL~s--I~~vs~l~i~s~~~~ 116 (617)
T PRK00095 92 LGFRGEALPS--IASVSRLTLTSRTAD 116 (617)
T ss_pred CCcchhHHHh--hhhceEEEEEEecCC
Confidence 8999999754 445568999999865
No 10
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.7e-13 Score=149.33 Aligned_cols=133 Identities=26% Similarity=0.391 Sum_probs=107.4
Q ss_pred CCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-----------CCceeEEEEEEccCCCceeEEE
Q 003718 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-----------GATYSNIDMLINRKDGSRMLLI 192 (800)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-----------gAt~V~Idi~~~~~~g~~~L~I 192 (800)
..||+++.++..+.++.-| ||+.+| ++|||.||.||.++ ......|.+..++ ....|+|
T Consensus 37 ~~fqaE~~qLm~lii~s~Y------S~kEvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk--~~~tlti 106 (656)
T KOG0019|consen 37 HEFQAETNQLMDIVAKSLY------SHKEVF--LRELISNASDALEKLRYLELKGDEKALPELEIRIITNK--DKRTITI 106 (656)
T ss_pred eehhhhHHhHHHHHHHHhh------cchHHH--HHhhhccccchHHHHHHHhhcCccccccceeEEeccCC--CcceEEE
Confidence 4699999999999999999 899999 99999999999865 1245677777775 4678999
Q ss_pred EECCCCCCHHhHHHhhhcCccccc-------------cCCcccCcccccccccccccCCeEEEEeeecCCCCCCCeEEee
Q 003718 193 EDNGGGMNPDKMRHCMSLGYSAKS-------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIG 259 (800)
Q Consensus 193 ~DNG~GM~~eeL~~~LsfG~SsK~-------------~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~dg~~~t~Svg 259 (800)
.|.|+||+.+||.+++ |+..+. .+.+.|||||+||++|+| ++.+|.|+||+.+.+ ...+-+.|
T Consensus 107 ~DtGIGMTk~dLvnnL--GTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e-~y~Wes~~ 182 (656)
T KOG0019|consen 107 QDTGIGMTKEDLVNNL--GTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE-GLQWTSNG 182 (656)
T ss_pred EecCCCcCHHHHHhhh--hhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc-ceeeecCC
Confidence 9999999999999986 655442 123589999999999998 999999999998754 44556666
Q ss_pred ecceeeeccCC
Q 003718 260 LLSYTFLRSTG 270 (800)
Q Consensus 260 lLS~tfL~~~g 270 (800)
--|++.-+.++
T Consensus 183 ~gs~~v~~~~~ 193 (656)
T KOG0019|consen 183 RGSYEIAEASG 193 (656)
T ss_pred CCceEEeeccC
Confidence 66666655554
No 11
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.4e-12 Score=144.77 Aligned_cols=112 Identities=23% Similarity=0.367 Sum_probs=92.1
Q ss_pred CccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 003718 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (800)
Q Consensus 125 ~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (800)
.||+++++|-.+-|...| ..+.+| ++|||.||.||.++ .-..++|.|..++ ....|.
T Consensus 76 ~FQaEVnRmMklIINSLY------~NKeIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dk--e~klLh 145 (785)
T KOG0020|consen 76 EFQAEVNRMMKLIINSLY------RNKEIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADK--EKKLLH 145 (785)
T ss_pred hHHHHHHHHHHHHHHHHh------hhhHHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeech--hhCeee
Confidence 489999999999999998 889999 99999999999865 1234566665554 467899
Q ss_pred EEECCCCCCHHhHHHhhhcCcccccc-----------------CCcccCcccccccccccccCCeEEEEeeecCC
Q 003718 192 IEDNGGGMNPDKMRHCMSLGYSAKSK-----------------AANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (800)
Q Consensus 192 I~DNG~GM~~eeL~~~LsfG~SsK~~-----------------~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~ 249 (800)
|.|.|.||++++|.+.| |+..|.. ..+.|||||+||++|++ ++.+|.|.||+++.
T Consensus 146 i~DtGiGMT~edLi~NL--GTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD 217 (785)
T KOG0020|consen 146 ITDTGIGMTREDLIKNL--GTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD 217 (785)
T ss_pred EecccCCccHHHHHHhh--hhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc
Confidence 99999999999999986 6555431 12579999999999887 99999999999864
No 12
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.23 E-value=2.1e-11 Score=142.23 Aligned_cols=154 Identities=19% Similarity=0.298 Sum_probs=110.3
Q ss_pred ccccccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccC------Cc
Q 003718 147 ATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------AN 220 (800)
Q Consensus 147 stsHkwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~------~~ 220 (800)
+..-..|.+||+|||+||+|| ||+.|.|++.. +|...|.|.|||+||+++||.-++.-.+++|... ..
T Consensus 18 GEVIerPaSVVKELVENSlDA---GAt~I~I~ve~---gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~ 91 (638)
T COG0323 18 GEVIERPASVVKELVENSLDA---GATRIDIEVEG---GGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIR 91 (638)
T ss_pred cceeecHHHHHHHHHhccccc---CCCEEEEEEcc---CCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhh
Confidence 455689999999999999999 99999988854 6888999999999999999999887666677543 24
Q ss_pred ccCcccccccccccccCCeEEEEeeecCCC-CCCCeEEeeecceeeeccCCC---CceEecccccccchhhhHHHhhcch
Q 003718 221 TIGQYGNGFKTSTMRLGADVIVFSCCCGKD-GKSPTRSIGLLSYTFLRSTGK---EDIVVPMLDYEGSQQEWKKIIRSSL 296 (800)
Q Consensus 221 ~IGrfG~GfKsAsmrLG~~V~V~SK~~g~d-g~~~t~SvglLS~tfL~~~g~---ddIiVPm~~we~~~~~~~~~i~~~~ 296 (800)
++|..|-.| ++++-.++++|.||+.+.. |.......|.+.- .+..... ..|.|--++|+++.. .+.+++..
T Consensus 92 TlGFRGEAL--~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~-~~~p~a~~~GTtVeV~dLF~NtPaR--rKflks~~ 166 (638)
T COG0323 92 TLGFRGEAL--ASIASVSRLTITSRTAEASEGTQIYAEGGGMEV-TVKPAAHPVGTTVEVRDLFYNTPAR--RKFLKSEK 166 (638)
T ss_pred ccCccHHHH--HHHHhhheeEEEeecCCcCceEEEEecCCcccc-cccCCCCCCCCEEEehHhhccChHH--HHhhcccH
Confidence 678888886 5777899999999976643 4444444443321 2222222 248899999987732 12455555
Q ss_pred hhhhhhHHHhhhcCC
Q 003718 297 DDWNRNVETIVQWSP 311 (800)
Q Consensus 297 ~dw~~nL~iIlkySP 311 (800)
.++.+-+++|.+|+.
T Consensus 167 ~E~~~i~~vv~r~AL 181 (638)
T COG0323 167 TEFGHITELINRYAL 181 (638)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665556655543
No 13
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=6.9e-10 Score=118.93 Aligned_cols=90 Identities=20% Similarity=0.355 Sum_probs=72.6
Q ss_pred ccccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccC------Cccc
Q 003718 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTI 222 (800)
Q Consensus 149 sHkwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~------~~~I 222 (800)
.-..|..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++...+..++++|... ....
T Consensus 19 ~i~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~ 92 (312)
T TIGR00585 19 VIERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETL 92 (312)
T ss_pred chhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhccccc
Confidence 3478899999999999999 89988888854 3455699999999999999999877666666432 2468
Q ss_pred CcccccccccccccCCeEEEEeee
Q 003718 223 GQYGNGFKTSTMRLGADVIVFSCC 246 (800)
Q Consensus 223 GrfG~GfKsAsmrLG~~V~V~SK~ 246 (800)
|..|.||. +++..++++|.||+
T Consensus 93 G~rG~al~--si~~~s~~~i~S~~ 114 (312)
T TIGR00585 93 GFRGEALA--SISSVSRLTITTKT 114 (312)
T ss_pred CccchHHH--HHHhhCcEEEEEee
Confidence 99999985 44455699999997
No 14
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.74 E-value=2.2e-08 Score=114.03 Aligned_cols=157 Identities=22% Similarity=0.308 Sum_probs=103.1
Q ss_pred ccccccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH-hhhcCcccccc--C---Cc
Q 003718 147 ATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSLGYSAKSK--A---AN 220 (800)
Q Consensus 147 stsHkwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~-~LsfG~SsK~~--~---~~ 220 (800)
+..-..|..||.|||.||+|| ++|.|.|.+.. ||-..|.|.|||.||.++||.- |=+|-+|.-.+ + ..
T Consensus 22 GEVI~RP~NAlKEliENSLDA---~ST~I~V~vk~---GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~ls 95 (694)
T KOG1979|consen 22 GEVIQRPVNALKELIENSLDA---NSTSIDVLVKD---GGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLS 95 (694)
T ss_pred cchhhchHHHHHHHHhccccC---CCceEEEEEec---CCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhh
Confidence 345578999999999999999 99988877743 6888999999999999999997 55566654322 2 23
Q ss_pred ccCcccccccccccccCCeEEEEeeecCCC-CCCCeEEeeecceeeeccCCCCc--eEecccccccchhhhHHHhhcchh
Q 003718 221 TIGQYGNGFKTSTMRLGADVIVFSCCCGKD-GKSPTRSIGLLSYTFLRSTGKED--IVVPMLDYEGSQQEWKKIIRSSLD 297 (800)
Q Consensus 221 ~IGrfG~GfKsAsmrLG~~V~V~SK~~g~d-g~~~t~SvglLS~tfL~~~g~dd--IiVPm~~we~~~~~~~~~i~~~~~ 297 (800)
+.|..|.. .|+|+-+++|+|.||+++.. |.+.+..-|.+-.+---.-|.+. |.|--++|++... .+.++...+
T Consensus 96 TyGFRGEA--LASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~R--rkal~~~~E 171 (694)
T KOG1979|consen 96 TYGFRGEA--LASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTR--RKALRNHAE 171 (694)
T ss_pred hcCccHHH--HhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHH--HHHhcCcHH
Confidence 45555555 57999999999999998642 22222222222111101112333 6688888987632 223444556
Q ss_pred hhhhhHHHhhhcCCCC
Q 003718 298 DWNRNVETIVQWSPFS 313 (800)
Q Consensus 298 dw~~nL~iIlkySPF~ 313 (800)
++..-+.++..|+-+.
T Consensus 172 E~~ki~dlv~ryAIHn 187 (694)
T KOG1979|consen 172 EYRKIMDLVGRYAIHN 187 (694)
T ss_pred HHHHHHHHHHHHheeC
Confidence 6666666666666553
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.74 E-value=3.3e-08 Score=110.51 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=77.2
Q ss_pred ccHHHHHHHHhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhh-cCccccc-cCCcccCccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKS-KAANTIGQYG 226 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~Ls-fG~SsK~-~~~~~IGrfG 226 (800)
+...++|.|||+||+||+.... ..|.|.|.... .+-..+.|.|||.|+.++.+.++|. +=+++|. ......||+|
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG-KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 5667899999999999986422 45677665432 3467899999999999999999763 4466665 5678899999
Q ss_pred ccccc----cccccCCeEEEEeeecC
Q 003718 227 NGFKT----STMRLGADVIVFSCCCG 248 (800)
Q Consensus 227 ~GfKs----AsmrLG~~V~V~SK~~g 248 (800)
+|.+. |-|..|+.|.|+|++.+
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~ 139 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGD 139 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCC
Confidence 99984 66889999999999875
No 16
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.45 E-value=2.2e-07 Score=108.93 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=92.1
Q ss_pred ccCCCCCCCCCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEE
Q 003718 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIE 193 (800)
Q Consensus 115 ag~y~~~~~~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~ 193 (800)
+.+|++... ..-.++.|++.-|.... -++...-+...|.||||||+|+..++ |+.|.|.+..+ ..|.|.
T Consensus 5 ~~~y~~~~i----~~L~~lE~VrkRP~mYi-Gs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d-----g~I~V~ 74 (631)
T PRK05559 5 TNNYNADSI----EVLEGLEPVRKRPGMYI-GSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD-----GSVSVR 74 (631)
T ss_pred cCCCCHHHC----eeccchHHHhcCCCcee-CCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC-----CcEEEE
Confidence 345665432 12367899999998654 35556788899999999999987664 88888888642 379999
Q ss_pred ECCCCCCHHhHHH--------hhh-cCccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 003718 194 DNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 194 DNG~GM~~eeL~~--------~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
|||.||+.+.... +|. +..++|..+ ....|..|+|++++.. +...++|.|++.+
T Consensus 75 DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNa-lS~~l~V~s~r~g 140 (631)
T PRK05559 75 DNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNA-LSSRLEVEVKRDG 140 (631)
T ss_pred EcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhh-heeeEEEEEEeCC
Confidence 9999999998887 553 355555432 2568999999875554 8899999999765
No 17
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.32 E-value=1.3e-06 Score=99.78 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=71.2
Q ss_pred cccHHHHHHHHhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhh-cCcccccc-CCcccCcc
Q 003718 150 HKWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQY 225 (800)
Q Consensus 150 HkwpF~AIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~Ls-fG~SsK~~-~~~~IGrf 225 (800)
...+..++.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++..++. |.+++|.. .....|.+
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g-~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~ 104 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG-KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQ 104 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCc
Confidence 46677899999999999954211 15666664321 1234799999999999999999875 66677643 44567999
Q ss_pred cccccccc----cccCCeEEEEeeecC
Q 003718 226 GNGFKTST----MRLGADVIVFSCCCG 248 (800)
Q Consensus 226 G~GfKsAs----mrLG~~V~V~SK~~g 248 (800)
|+|+.++. +..|..+.|.|+..|
T Consensus 105 GlGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 105 GIGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred cEehhHHHHHHHHcCCceEEEEEecCC
Confidence 99998532 334667999999865
No 18
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.27 E-value=1.8e-06 Score=99.67 Aligned_cols=98 Identities=28% Similarity=0.387 Sum_probs=70.0
Q ss_pred ccHHHHHHHHhhcchhhhhcCC--ceeEEEEEEcc-CCCceeEEEEECCCCCCHHhHHHhhh-cCccccccC-CcccCcc
Q 003718 151 KWALGAFAELLDNSLDEVCNGA--TYSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQY 225 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gA--t~V~Idi~~~~-~~g~~~L~I~DNG~GM~~eeL~~~Ls-fG~SsK~~~-~~~IGrf 225 (800)
.....+|.|||+||+||..... ..|.|.+.... .++...|.|.|||.||+++++..++. |.+++|... ....|.+
T Consensus 35 ~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~ 114 (535)
T PRK04184 35 RALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQ 114 (535)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCC
Confidence 3457899999999999954221 24666664321 13456799999999999999999874 555565433 4567999
Q ss_pred cccccccc----cccCCeEEEEeeecC
Q 003718 226 GNGFKTST----MRLGADVIVFSCCCG 248 (800)
Q Consensus 226 G~GfKsAs----mrLG~~V~V~SK~~g 248 (800)
|+||..+. +..|..+.|.|+..+
T Consensus 115 GLGLsiv~~isq~~~G~~I~V~S~~~~ 141 (535)
T PRK04184 115 GIGISAAVLYAQMTTGKPVRVISSTGG 141 (535)
T ss_pred CcchHHHHHHHHHhcCCcEEEEEecCC
Confidence 99998643 334677999998754
No 19
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.22 E-value=1.1e-06 Score=103.20 Aligned_cols=110 Identities=25% Similarity=0.265 Sum_probs=81.6
Q ss_pred CCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-CCceeEEEEEEccCCCceeEEEEECCCCCCHHh-----
Q 003718 130 TGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (800)
Q Consensus 130 ~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~ee----- 203 (800)
-.++.+||.-|-... -+| .|..+|.||||||+|...+ +|+.|.|.+.. + ..|+|.|||.||+.++
T Consensus 12 L~gle~VRkRPgMYi-gs~---~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~g 82 (625)
T TIGR01055 12 LDGLEPVRKRPGMYT-DTT---RPNHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKEG 82 (625)
T ss_pred ecccHHhhcCCCCee-CCC---CcceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCcccccccC
Confidence 367888888887654 222 2356899999999994433 58989988853 2 5899999999999988
Q ss_pred ---HHHhh-hcCccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 003718 204 ---MRHCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (800)
Q Consensus 204 ---L~~~L-sfG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~ 249 (800)
+.-+| .+..++|..+ ....|..|+|+++... ++..++|.|++.+.
T Consensus 83 ~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vna-lS~~l~v~~~r~g~ 134 (625)
T TIGR01055 83 VSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNA-LSKRVKIKVYRQGK 134 (625)
T ss_pred CcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHH-hcCeEEEEEEECCe
Confidence 66666 4555556432 2578999999875543 88889999998663
No 20
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.22 E-value=2.6e-06 Score=76.42 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=66.4
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (800)
.+..+|.||++||+++...+ ..|.|.+... ++...|.|.|||.||+++++..++..+++.+. .....+.+|+||..
T Consensus 5 ~l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~ 80 (111)
T PF02518_consen 5 RLRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYI 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHH
Confidence 34578999999999996543 5677777654 36789999999999999999998876665553 34556679999974
Q ss_pred cc---cccCCeEEEEeee
Q 003718 232 ST---MRLGADVIVFSCC 246 (800)
Q Consensus 232 As---mrLG~~V~V~SK~ 246 (800)
+. -.++-++.+.+..
T Consensus 81 ~~~~~~~~~g~l~~~~~~ 98 (111)
T PF02518_consen 81 VKQIAERHGGELTIESSE 98 (111)
T ss_dssp HHHHHHHTTEEEEEEEET
T ss_pred HHHHHHHCCCEEEEEEcC
Confidence 22 2245566666654
No 21
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.20 E-value=3.2e-06 Score=100.26 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=70.8
Q ss_pred ccHHHHHHHHhhcchhhhhcCCc--eeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhh-cCccccccC-CcccCccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYG 226 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt--~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~Ls-fG~SsK~~~-~~~IGrfG 226 (800)
.++..+|.|||+||+||...+.. .|.|.+... +....|.|.|||.||+++++..++. |.+++|... ....|+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~--g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV--GDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC--CCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 56789999999999999432211 466666442 2345799999999999999999885 666666432 25679999
Q ss_pred ccccccc----cccCCeEEEEeeecC
Q 003718 227 NGFKTST----MRLGADVIVFSCCCG 248 (800)
Q Consensus 227 ~GfKsAs----mrLG~~V~V~SK~~g 248 (800)
+|+.++. +..|..+.|.|+..+
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 9998543 334788999999765
No 22
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.18 E-value=1.3e-06 Score=101.48 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=68.8
Q ss_pred ccccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCcccccc------CCccc
Q 003718 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------AANTI 222 (800)
Q Consensus 149 sHkwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~------~~~~I 222 (800)
.-..+.+||.|||+||+|| |||.|.|.+.. .|...|.|.|||+|+++.+..-+-.-.+++|.. ...+.
T Consensus 17 vI~sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~ 90 (672)
T KOG1978|consen 17 VITSLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTL 90 (672)
T ss_pred eeccHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhh
Confidence 3477889999999999999 99988888844 378899999999999999987622223444432 13467
Q ss_pred CcccccccccccccCCeEEEEeeecC
Q 003718 223 GQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 223 GrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
|..|-.| +++---.+|+|.||+..
T Consensus 91 GFRGEAL--SsLCa~~dv~I~Trt~~ 114 (672)
T KOG1978|consen 91 GFRGEAL--SSLCALGDVMISTRSHS 114 (672)
T ss_pred hhHHHHH--HhhhhccceEEEEeecc
Confidence 8888776 34434478999999863
No 23
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.15 E-value=2.6e-06 Score=100.35 Aligned_cols=123 Identities=24% Similarity=0.286 Sum_probs=82.4
Q ss_pred ccCCCCCCCCCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEE
Q 003718 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIE 193 (800)
Q Consensus 115 ag~y~~~~~~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~ 193 (800)
+.+|++... ..-.++.|++.-|.... -++...-..-.|.||||||+|...++ |+.|.|.+.. +| .|.|.
T Consensus 5 ~~~Y~~~~i----~~L~~lE~Vr~RPgMYi-Gs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~g--~I~V~ 74 (638)
T PRK05644 5 AQEYDASQI----QVLEGLEAVRKRPGMYI-GSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---DG--SITVT 74 (638)
T ss_pred cCCCCHHHC----eEecchHHHhcCCCceE-CCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---CC--cEEEE
Confidence 355665442 12367888998887543 23333444557899999999943338 8999988854 23 89999
Q ss_pred ECCCCCCHHhHHH--------hhh-cCccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 003718 194 DNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 194 DNG~GM~~eeL~~--------~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
|||.||+.+.-.. .|. +..++|..+ ....|+.|+|+++... +...++|.|++.+
T Consensus 75 DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vna-lS~~~~v~t~r~g 140 (638)
T PRK05644 75 DNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNA-LSTWLEVEVKRDG 140 (638)
T ss_pred EeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhh-eeceEEEEEEeCC
Confidence 9999999862211 222 233444332 2378999999976554 7888999999765
No 24
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.01 E-value=7.9e-06 Score=97.69 Aligned_cols=112 Identities=23% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCCccccccCchhhhcccccc-ccHHHHHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEECCCCCCHH-----
Q 003718 130 TGGMDHVRVHPKFLHSNATSH-KWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPD----- 202 (800)
Q Consensus 130 ~~~l~~~~vhp~fLhSnstsH-kwpF~AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GM~~e----- 202 (800)
-.++.||+.-|....- +|.. .-..-.+.||||||+|...+| |+.|.|.+.. + ..|+|.|||.||+.+
T Consensus 15 L~gle~VRkRPgMYIG-st~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---d--gsIsV~DnGrGIPvd~h~~~ 88 (756)
T PRK14939 15 LKGLDAVRKRPGMYIG-DTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---D--GSVSVSDNGRGIPTDIHPEE 88 (756)
T ss_pred ecccHHHhcCCCCeeC-CCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcC---C--CeEEEEEcCCcccCCccccc
Confidence 3678899998876532 2222 334457899999999943337 8989888854 2 389999999999987
Q ss_pred -----hHHHhhhcCccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 003718 203 -----KMRHCMSLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (800)
Q Consensus 203 -----eL~~~LsfG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~ 249 (800)
++.-. .+..++|..+ .-..|..|+|++... .+...+.|.+++.|.
T Consensus 89 g~~~~Elvlt-~lhAggKfd~~~ykvSgGlhGvG~svvN-AlS~~l~v~v~r~gk 141 (756)
T PRK14939 89 GVSAAEVIMT-VLHAGGKFDQNSYKVSGGLHGVGVSVVN-ALSEWLELTIRRDGK 141 (756)
T ss_pred CCchhhheee-eecccCCCCCCcccccCCccCccceEee-hccCeEEEEEEeCCe
Confidence 44422 2444455322 236899999987544 488889999998663
No 25
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.98 E-value=9.2e-06 Score=95.95 Aligned_cols=111 Identities=26% Similarity=0.298 Sum_probs=75.2
Q ss_pred CCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEECCCCCCHHhHH----
Q 003718 131 GGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMR---- 205 (800)
Q Consensus 131 ~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~---- 205 (800)
.++.|++.-|.... -++...-..-+|.|||+||+|...++ |+.|.|.+.. +| .|.|.|||.||+.+.-.
T Consensus 10 ~~lE~vr~RP~mYi-Gs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 10 EGLEAVRKRPGMYI-GSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---DG--SVTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred cchHHHhcCCCcee-CCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeC---CC--cEEEEEeCCCcCccccCcCCC
Confidence 56778888887532 12222444567899999999943337 8999998864 23 49999999999986211
Q ss_pred ----Hhhh-cCccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 003718 206 ----HCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 206 ----~~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
..|. +..++|..+ ....|..|+|+++.. .++..++|.|++.+
T Consensus 84 ~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g 133 (654)
T TIGR01059 84 SAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDG 133 (654)
T ss_pred CchHHheeeecccCccCCCcceecCCccchhHHHHH-HhcCeEEEEEEECC
Confidence 1122 233444322 257899999997554 37888999999865
No 26
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=97.93 E-value=1.7e-05 Score=93.41 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=67.2
Q ss_pred cHHHHHHHHhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhh-cCccccccC-CcccCcccc
Q 003718 152 WALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYGN 227 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~Ls-fG~SsK~~~-~~~IGrfG~ 227 (800)
...++|.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++..++. |-+++|... ....|..|+
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~ 114 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLG-SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGI 114 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcc
Confidence 344789999999999953211 25777665421 1234699999999999999999886 445555422 356789999
Q ss_pred cccccc----cccCCeEEEEeeec
Q 003718 228 GFKTST----MRLGADVIVFSCCC 247 (800)
Q Consensus 228 GfKsAs----mrLG~~V~V~SK~~ 247 (800)
|+.++. +..|..+.|.|+..
T Consensus 115 GLa~a~~vsql~~G~pI~I~S~~g 138 (659)
T PRK14867 115 GAAGVLLFSQITTGKPLKITTSTG 138 (659)
T ss_pred cHHHHHHHHHHhcCCcEEEEEEcC
Confidence 997544 44577788999864
No 27
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.86 E-value=8.8e-06 Score=95.19 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=62.1
Q ss_pred HHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH--------hhh-cCccccccC---Cccc
Q 003718 156 AFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTI 222 (800)
Q Consensus 156 AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~--------~Ls-fG~SsK~~~---~~~I 222 (800)
.|.||||||+||..++ |+.|.|.+..+ | .|+|.|||.||+.+.... .|. +-+++|..+ ....
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~~---g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDKD---N--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeCC---C--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 4789999999995444 89899888542 3 899999999998644321 121 223344322 2478
Q ss_pred CcccccccccccccCCeEEEEeeecC
Q 003718 223 GQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 223 GrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
|..|+|+++.. .+...++|.|++.+
T Consensus 80 G~~G~Gls~vn-alS~~l~v~~~~~g 104 (594)
T smart00433 80 GLHGVGASVVN-ALSTEFEVEVARDG 104 (594)
T ss_pred CcccchHHHHH-HhcCceEEEEEeCC
Confidence 99999987554 48899999999875
No 28
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.47 E-value=0.00026 Score=59.22 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=58.1
Q ss_pred HHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccccc-
Q 003718 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST- 233 (800)
Q Consensus 155 ~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAs- 233 (800)
.++.|||+||+++.......|.|.+... ++...|.|.|+|.||++..+..++... .+.......+.+|+|++.+.
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~~--~~~~~v~i~d~g~g~~~~~~~~~~~~~--~~~~~~~~~~~~g~gl~~~~~ 78 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVERD--GDHLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVKK 78 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHHhhhh--hcCCCCCCCCccccCHHHHHH
Confidence 5799999999999432124566655443 345789999999999999998876432 11122335567899987432
Q ss_pred --cccCCeEEEEeee
Q 003718 234 --MRLGADVIVFSCC 246 (800)
Q Consensus 234 --mrLG~~V~V~SK~ 246 (800)
-+++..+.+.+..
T Consensus 79 ~~~~~~g~~~~~~~~ 93 (103)
T cd00075 79 LVELHGGRIEVESEP 93 (103)
T ss_pred HHHHcCCEEEEEeCC
Confidence 2245577776653
No 29
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.45 E-value=0.0002 Score=82.43 Aligned_cols=88 Identities=22% Similarity=0.310 Sum_probs=67.7
Q ss_pred ccHHHHHHHHhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~G 228 (800)
....+.+.-|||||+||..... ..|.+.+.. .++.-.|.|.|+|+||+++.+...+..|+|.|. -+..|+|
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~--~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiG 498 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSD--RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIG 498 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe--cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchh
Confidence 4445899999999999976322 345555543 467889999999999999999999999999984 3566888
Q ss_pred ccc---cccccCCeEEEEee
Q 003718 229 FKT---STMRLGADVIVFSC 245 (800)
Q Consensus 229 fKs---AsmrLG~~V~V~SK 245 (800)
++. ..=++|-.++|-+.
T Consensus 499 L~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 499 LYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred HHHHHHHHHHcCceEEEeeC
Confidence 873 34457777888776
No 30
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.43 E-value=0.00011 Score=85.96 Aligned_cols=89 Identities=20% Similarity=0.242 Sum_probs=67.3
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCcccccc------CCcccCcc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQY 225 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~------~~~~IGrf 225 (800)
....++.|||-||+|| +|+.|.|.+.. ....+.|.|||.||.++||...-.--+++|.. .....|..
T Consensus 21 sla~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfR 93 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFR 93 (1142)
T ss_pred HHHHHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccc
Confidence 3457899999999999 99998888744 25679999999999999999876544555532 23456766
Q ss_pred cccccccccccCCeEEEEeeecCC
Q 003718 226 GNGFKTSTMRLGADVIVFSCCCGK 249 (800)
Q Consensus 226 G~GfKsAsmrLG~~V~V~SK~~g~ 249 (800)
|..+ |+++=-+-+.|+|+..+.
T Consensus 94 GeAL--asIsd~s~l~v~skkk~r 115 (1142)
T KOG1977|consen 94 GEAL--ASISDMSSLVVISKKKNR 115 (1142)
T ss_pred hhhh--hhhhhhhhhhhhhhhcCC
Confidence 7665 455566778889988765
No 31
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.40 E-value=0.00043 Score=58.91 Aligned_cols=75 Identities=19% Similarity=0.335 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccc
Q 003718 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (800)
...+|.||++||+++... ...|.|.+... ++...|.|.|+|.||+++.+...+..++..+. .....+.+|+|++.
T Consensus 6 l~~~~~~l~~n~~~~~~~-~~~v~i~~~~~--~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~ 80 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE-GGRITVTLERD--GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSI 80 (111)
T ss_pred HHHHHHHHHHHHHhcCCC-CCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHH
Confidence 456899999999998321 14667766543 35678999999999999999988765554432 22345678999873
No 32
>PRK10604 sensor protein RstB; Provisional
Probab=97.24 E-value=0.0009 Score=74.29 Aligned_cols=91 Identities=18% Similarity=0.321 Sum_probs=64.4
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.++-.++..||+||+.+ +...|.|.+... ++.-.|.|.|||.||+++++.+.+...+.........-|.+|+|+.
T Consensus 318 ~~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ 392 (433)
T PRK10604 318 RLMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHH
Confidence 45667899999999998 556777777554 3456899999999999999999887555432111122356799986
Q ss_pred c---cccccCCeEEEEeee
Q 003718 231 T---STMRLGADVIVFSCC 246 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~ 246 (800)
. ..-..|-++.|-+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 3 233467778887764
No 33
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.14 E-value=0.0012 Score=71.97 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=63.4
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.+...+|.+||+||+.+ +...|.|.+... ++.-.|+|.|||.||+++++.+.+...++........-+.+|+|+.
T Consensus 352 ~~l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~ 426 (461)
T PRK09470 352 NALASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHH
Confidence 34566799999999998 556677776544 3456799999999999999999876554433211223456788887
Q ss_pred cc---ccccCCeEEEEeee
Q 003718 231 TS---TMRLGADVIVFSCC 246 (800)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (800)
.+ ....+-.+.+.+..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 42 23467778777764
No 34
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.07 E-value=0.001 Score=72.12 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=62.3
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
..+..+|.+||+||+.+... ...|.|.+..+ ++...|.|.|||.||+++.+.+.+.-++..+......-+..|+|+.
T Consensus 352 ~~l~~~~~nll~Nai~~~~~-~~~I~i~~~~~--~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 428 (457)
T TIGR01386 352 QMFRRAISNLLSNALRHTPD-GGTITVRIERR--SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLA 428 (457)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CceEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHH
Confidence 44667899999999998321 24577766553 4566899999999999999999887666554321122345788887
Q ss_pred cc---ccccCCeEEEEe
Q 003718 231 TS---TMRLGADVIVFS 244 (800)
Q Consensus 231 sA---smrLG~~V~V~S 244 (800)
.+ .-++|-.+.+.+
T Consensus 429 i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 429 IVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 32 223566777776
No 35
>PRK10364 sensor protein ZraS; Provisional
Probab=97.03 E-value=0.0015 Score=72.43 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=63.6
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.....++..||+||+++.. ....|.|.+... ++.-.|.|.|||.||+++.+.+.+..+++.|. +..|+|+.
T Consensus 347 ~~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------~g~GlGL~ 417 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------EGTGLGLA 417 (457)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCC------CCCcccHH
Confidence 4567889999999999853 245677766543 34578999999999999999999987777663 23588876
Q ss_pred c---cccccCCeEEEEeee
Q 003718 231 T---STMRLGADVIVFSCC 246 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~ 246 (800)
. ..-.+|-++.|.+..
T Consensus 418 iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 418 VVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 3 222366777776653
No 36
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.02 E-value=0.0015 Score=71.97 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=63.5
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.....++..||+||+.+... ...|.|.+... ++.-.|.|.|||.||+++++.+.+...+..+.......|..|+|+.
T Consensus 316 ~~l~~vl~NLl~NAik~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 392 (430)
T PRK11006 316 DQLRSAISNLVYNAVNHTPE-GTHITVRWQRV--PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA 392 (430)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHH
Confidence 45678999999999999432 23466665443 3456899999999999999999887555433222223355688886
Q ss_pred c---cccccCCeEEEEeee
Q 003718 231 T---STMRLGADVIVFSCC 246 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~ 246 (800)
. ..-..|-.+.|-|..
T Consensus 393 ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 393 IVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 3 223467778887764
No 37
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.00037 Score=81.51 Aligned_cols=114 Identities=24% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEECCCCCCHHh-----
Q 003718 130 TGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (800)
Q Consensus 130 ~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GM~~ee----- 203 (800)
-.+|.+|+.-|-...--.+.-+-+.--+.|+||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 14 L~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~~~ 88 (635)
T COG0187 14 LEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPKEK 88 (635)
T ss_pred ccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCCCC
Confidence 367888888887653211111222234679999999987665 6777777753 35799999999998765
Q ss_pred ---HHHhhh-cCccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 003718 204 ---MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (800)
Q Consensus 204 ---L~~~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~ 249 (800)
+.-+|. +....|..+ ...=|..|+|.+ +.=.|...+.|.+++.|+
T Consensus 89 ~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~gk 140 (635)
T COG0187 89 VSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGK 140 (635)
T ss_pred CCceEEEEEeeccCcccCCCccEeecCCCccceE-EEecccceEEEEEEECCE
Confidence 222333 344444332 235699999975 444589999999998764
No 38
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.00 E-value=0.0012 Score=66.04 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=53.9
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.|.-.+|..||+||++|.. ...|.|.+.... +.-.|.|.|||.||+++.+...+..+++.+.... -.|+|+.
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~~--~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~ 298 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQDD--EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLA 298 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEecC--CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CCCccHH
Confidence 4566699999999999932 467777775532 3578999999999999999988887777764221 3466665
No 39
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.00 E-value=0.00093 Score=79.20 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=71.9
Q ss_pred CCccccccCchhhhccccccccHHHHHHHHhhcchhhhhc-CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH---
Q 003718 131 GGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--- 206 (800)
Q Consensus 131 ~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~--- 206 (800)
.++.|++.-|....- +|...-..-.+.|+||||+|...+ .|+.|.|.+.. ...|+|.|||.||+.+--..
T Consensus 14 ~glE~VRkRPgMYIG-st~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~~~~ 87 (637)
T TIGR01058 14 EGLDAVRKRPGMYIG-STDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQDGNI 87 (637)
T ss_pred cccHHHhcCCCCeEC-CCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCcCCC
Confidence 578888888875432 222122233467999999996443 47888888753 23799999999997642111
Q ss_pred -----hhh-cCccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 003718 207 -----CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 207 -----~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
.|. +....|..+ ...-|..|+|.+..- .+...++|.+++.|
T Consensus 88 ~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvN-AlS~~~~V~v~r~g 137 (637)
T TIGR01058 88 STVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVN-ALSSWLEVTVKRDG 137 (637)
T ss_pred ccceeEEEEecccCcCCCCcccccCCcccccccccc-eeeceEEEEEEECC
Confidence 121 223333322 245799999987544 48899999998765
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.95 E-value=0.003 Score=69.37 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=62.8
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (800)
....+|..||+||+.+... ...|.|.+.... ++.-.|.|.|||.||+++++.+++...++.+. ...-+-+|+||..
T Consensus 272 ~l~qvl~NLl~NAik~~~~-~~~I~i~~~~~~-~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i 347 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPE-GGTITLSMLHRT-TQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSV 347 (380)
T ss_pred HHHHHHHHHHHHHHhcCCC-CceEEEEEEecC-CCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHH
Confidence 4567899999999998432 234666553322 34567999999999999999998875554443 2223458888863
Q ss_pred ---cccccCCeEEEEeeec
Q 003718 232 ---STMRLGADVIVFSCCC 247 (800)
Q Consensus 232 ---AsmrLG~~V~V~SK~~ 247 (800)
..-.+|-.+.|.+...
T Consensus 348 ~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 348 CRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 2234777888877643
No 41
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.93 E-value=0.0021 Score=70.58 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=63.1
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (800)
....++.+||+||+.+... ...|.|.+... ++.-.|.|.|||.||+++++.+.+.-.+..+.......|..|+|+..
T Consensus 352 ~l~qvl~nll~NAi~~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTDS-GGSLHISAEQR--DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCEEEEEEEEc--CCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 4567899999999998331 23567766553 35668999999999999999998765454432222234567888763
Q ss_pred ---cccccCCeEEEEeee
Q 003718 232 ---STMRLGADVIVFSCC 246 (800)
Q Consensus 232 ---AsmrLG~~V~V~SK~ 246 (800)
..-+.|-.+.+.+..
T Consensus 429 v~~i~~~~~G~l~~~s~~ 446 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSP 446 (466)
T ss_pred HHHHHHHcCCEEEEEECC
Confidence 223467777777764
No 42
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.83 E-value=0.0022 Score=65.77 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=61.8
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.....++.+||.||+.+.. ....|.|.+... ++...|.|.|||.||+++.+..++...+..+.......+..|+|+.
T Consensus 228 ~~l~~vl~nll~Nai~~~~-~~~~i~i~~~~~--~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTP-EGGTITVRWRRD--GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred HHHHHHHHHHHHHhheeCC-CCCeEEEEEEEc--CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 4567789999999999832 124466655443 3457899999999999999999887555432211122234588886
Q ss_pred c---cccccCCeEEEEeee
Q 003718 231 T---STMRLGADVIVFSCC 246 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~ 246 (800)
. ..-.+|..+.+-+..
T Consensus 305 ~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 3 122367778877764
No 43
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.79 E-value=0.0033 Score=68.48 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=63.7
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.++..++.+||.||+.+.. ....|.|.+... ++...|+|.|||.||+++++.+.+..+++.+... ..-+..|+|++
T Consensus 367 ~~l~~vl~nli~Na~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-~~~~~~GlGL~ 442 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFSP-EGGTITLSAEVD--GEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-NGRKSTGLGLA 442 (475)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-CCCCCcchhHH
Confidence 4677899999999999832 235677776543 4567899999999999999999887665543211 12234578877
Q ss_pred cc---ccccCCeEEEEeee
Q 003718 231 TS---TMRLGADVIVFSCC 246 (800)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (800)
.+ ...+|-.+.+.+..
T Consensus 443 i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 443 FVREVARLHGGEVTLRNRP 461 (475)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 31 22366678887764
No 44
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.75 E-value=0.0042 Score=67.78 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.+...++.+||+||+.+ +...|.|.+... ++.-.|+|.|||.||+++++.+.+..++..... . .-+.+|+|+.
T Consensus 330 ~~l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~-~-~~~g~GlGL~ 402 (435)
T PRK09467 330 IAIKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA-R-GSSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC-C-CCCCeehhHH
Confidence 34566899999999998 566777776543 355679999999999999999988755543211 1 1245788876
Q ss_pred cc---ccccCCeEEEEeee
Q 003718 231 TS---TMRLGADVIVFSCC 246 (800)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (800)
.+ .-..|-++.|.+..
T Consensus 403 iv~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 403 IVKRIVDQHNGKVELGNSE 421 (435)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 21 12356677776654
No 45
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.75 E-value=0.0029 Score=67.50 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=64.3
Q ss_pred cccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccc
Q 003718 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (800)
Q Consensus 150 HkwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (800)
..|...++..||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++++...+..++.... .-+..|+|+
T Consensus 245 ~~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL 317 (356)
T PRK10755 245 ATLLRLLLRNLVENAHRYSP-EGSTITIKLSQE--DGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHHHHhhCC-CCCcEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHH
Confidence 36777899999999999832 235577766443 35678999999999999999998765543221 224568887
Q ss_pred ccc---ccccCCeEEEEeeec
Q 003718 230 KTS---TMRLGADVIVFSCCC 247 (800)
Q Consensus 230 KsA---smrLG~~V~V~SK~~ 247 (800)
+.+ .-.+|-.+.+.|...
T Consensus 318 ~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 318 SIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 632 234677888888753
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.62 E-value=0.0038 Score=70.49 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=63.0
Q ss_pred cHHHHHHHHhhcchhhhhc---CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccc
Q 003718 152 WALGAFAELLDNSLDEVCN---GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~---gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~G 228 (800)
.....+.+||+||+++... +...|.|.+... ++.-.|.|.|||.||+++++...+..|++.|.. .-|..|+|
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~---~~~g~GlG 506 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE--GDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD---EPGEHGIG 506 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC--CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC---CCCCceeC
Confidence 3556799999999999532 235566665443 455679999999999999999999888887632 23445888
Q ss_pred ccccc---cccCCeEEEEeee
Q 003718 229 FKTST---MRLGADVIVFSCC 246 (800)
Q Consensus 229 fKsAs---mrLG~~V~V~SK~ 246 (800)
+..+- -..+-.+.|.|..
T Consensus 507 L~ivk~iv~~~~G~i~v~s~~ 527 (545)
T PRK15053 507 LYLIASYVTRCGGVITLEDND 527 (545)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 86321 2355667776653
No 47
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.59 E-value=0.0034 Score=68.06 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcchhhhhcCC---ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccc
Q 003718 153 ALGAFAELLDNSLDEVCNGA---TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~gA---t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (800)
.-.++.+||.||+++...+. ..|.|.... .++.-.|+|.|||.||+++.+.+.+...++.|... .+--|+||
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL 462 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL--NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGL 462 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccH
Confidence 45689999999999954332 234444333 34667899999999999999999887556555311 33457777
Q ss_pred cc---cccccCCeEEEEeee
Q 003718 230 KT---STMRLGADVIVFSCC 246 (800)
Q Consensus 230 Ks---AsmrLG~~V~V~SK~ 246 (800)
.. ..-.+|-.+.|-|..
T Consensus 463 ~i~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 463 SVAQEIVADHGGIIDLDDDY 482 (494)
T ss_pred HHHHHHHHHcCCEEEEEECC
Confidence 62 112367788776653
No 48
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.54 E-value=0.0046 Score=69.00 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=60.8
Q ss_pred cHHHHHHHHhhcchhhhhc-CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 152 WALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.+..++.+|++||+++... ....|.|.+... ++.-.|.|.|||.||+++++.+.+..+++.|. +..|+||.
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~------~g~GlGL~ 504 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYR--NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG------SNRGVGLY 504 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHhCCCccCC------CCCcCcHH
Confidence 3557899999999998532 234566666543 45668999999999999999999887777663 23488876
Q ss_pred cc---ccccCCeEEEEee
Q 003718 231 TS---TMRLGADVIVFSC 245 (800)
Q Consensus 231 sA---smrLG~~V~V~SK 245 (800)
.+ .-..|-.+.|.+.
T Consensus 505 iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 505 LVKQSVENLGGSIAVESE 522 (542)
T ss_pred HHHHHHHHcCCEEEEEeC
Confidence 32 2235666777665
No 49
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.43 E-value=0.0056 Score=72.24 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=60.7
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHh-HHHhhhcCccccccCCcccCccccccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK-MRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~ee-L~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
....++.+||+||+++.. ....|.|.+... ++.-.|.|.|||.||+++. ..+.+...++.+. +..|+|+.
T Consensus 579 ~l~~vl~nLl~NAik~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------~G~GLGL~ 649 (679)
T TIGR02916 579 RLERVLGHLVQNALEATP-GEGRVAIRVERE--CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------AGMGIGVY 649 (679)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCcEEEEEEEc--CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------CCcchhHH
Confidence 355689999999999943 234577776543 3567899999999999999 5667665555542 34577876
Q ss_pred cc---ccccCCeEEEEeee
Q 003718 231 TS---TMRLGADVIVFSCC 246 (800)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (800)
.+ .-.+|-++.|.|..
T Consensus 650 i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 650 ECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 23477888888764
No 50
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.43 E-value=0.0079 Score=66.77 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=60.2
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (800)
....++.+||+||+.+... ...|.|.+.... ++.-.|.|.|||.||+++.+...+..+++.+. +..|+|+..
T Consensus 500 ~l~~~~~nli~na~~~~~~-~~~i~v~~~~~~-~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------~g~glGL~~ 571 (607)
T PRK11360 500 LLKQVLLNILINAVQAISA-RGKIRIRTWQYS-DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------KGTGLGLAL 571 (607)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCeEEEEEEEcC-CCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------CCCchhHHH
Confidence 3667899999999998542 335666665432 12278999999999999999988876665542 235677652
Q ss_pred ---cccccCCeEEEEeee
Q 003718 232 ---STMRLGADVIVFSCC 246 (800)
Q Consensus 232 ---AsmrLG~~V~V~SK~ 246 (800)
..-.+|-++.|.+..
T Consensus 572 ~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 572 SQRIINAHGGDIEVESEP 589 (607)
T ss_pred HHHHHHHcCCEEEEEEcC
Confidence 122467788887764
No 51
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.31 E-value=0.0016 Score=79.22 Aligned_cols=121 Identities=23% Similarity=0.261 Sum_probs=77.7
Q ss_pred CCCCCCCCCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEC
Q 003718 117 DYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDN 195 (800)
Q Consensus 117 ~y~~~~~~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DN 195 (800)
+|++.... .-.++.+||.-|-...-.. ...-..-.|.|+||||+|...++ ++.|.|.+.. ...|+|.||
T Consensus 99 ~Y~a~~I~----vLeGLEaVRkRPGMYIGst-~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~Dn 168 (903)
T PTZ00109 99 EYDADDIV----VLEGLEAVRKRPGMYIGNT-DEKGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISDN 168 (903)
T ss_pred CCChHhCe----ehhccHHHhcCCCceeCCC-CCCcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEeC
Confidence 58765532 2368899999998654322 21222234679999999976655 6778877743 247999999
Q ss_pred CCCCCHHhHHH--------hhh-------cCccc------------------cc-------------------cCCcccC
Q 003718 196 GGGMNPDKMRH--------CMS-------LGYSA------------------KS-------------------KAANTIG 223 (800)
Q Consensus 196 G~GM~~eeL~~--------~Ls-------fG~Ss------------------K~-------------------~~~~~IG 223 (800)
|.||+-+.-.. +|. |+... +. .=...-|
T Consensus 169 GRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGG 248 (903)
T PTZ00109 169 GRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSG 248 (903)
T ss_pred CccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCc
Confidence 99997643221 111 22210 00 0013579
Q ss_pred cccccccccccccCCeEEEEeeecC
Q 003718 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 224 rfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
..|+|.+.+ =.|...+.|.+++.|
T Consensus 249 LHGVG~SVV-NALS~~l~VeV~RdG 272 (903)
T PTZ00109 249 LHGVGLSVV-NALSSFLKVDVFKGG 272 (903)
T ss_pred CCCcceeee-eeccCeEEEEEEECC
Confidence 999998644 459999999999876
No 52
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.26 E-value=0.0089 Score=71.45 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=64.8
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.+...+|..||+||+.+... ...|.|.+..+ ++.-.|.|.|||.||+++++.+.+...++.+......-+..|+|+.
T Consensus 596 ~~L~~il~NLI~NAik~s~~-~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~ 672 (703)
T TIGR03785 596 ELIAQMLDKLVDNAREFSPE-DGLIEVGLSQN--KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLY 672 (703)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHH
Confidence 35667899999999998532 34466666543 3566799999999999999999887666554322222335788887
Q ss_pred c---cccccCCeEEEEeeec
Q 003718 231 T---STMRLGADVIVFSCCC 247 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~~ 247 (800)
. .....|-.+.+.+...
T Consensus 673 Ivr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 673 IVRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 3 2334677777776643
No 53
>PRK09835 sensor kinase CusS; Provisional
Probab=96.21 E-value=0.012 Score=64.98 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=61.3
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.++..+|.+||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+++++...+...+.........-+.+|+||.
T Consensus 374 ~~l~~vl~nll~Na~~~~~-~~~~I~i~~~~~--~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~ 450 (482)
T PRK09835 374 LMLRRAISNLLSNALRYTP-AGEAITVRCQEV--DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLA 450 (482)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHH
Confidence 3567889999999999843 123577766543 3456899999999999999998876444332111112245788885
Q ss_pred c---cccccCCeEEEEee
Q 003718 231 T---STMRLGADVIVFSC 245 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK 245 (800)
. -.-.+|-++.|-+.
T Consensus 451 i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 451 IVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 2 23346777877765
No 54
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.14 E-value=0.015 Score=66.25 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccccc
Q 003718 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (800)
...++..||+||+.+ ....|.|.+... ++.-.|.|.|||.||+++++...+..++.... .-+-.|+|+..+
T Consensus 379 l~~vl~NLi~NAik~---~~~~i~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~----~~~G~GLGL~Iv 449 (485)
T PRK10815 379 FMEVMGNVLDNACKY---CLEFVEISARQT--DEHLHIVVEDDGPGIPESKRELIFDRGQRADT----LRPGQGLGLSVA 449 (485)
T ss_pred HHHHHHHHHHHHHHh---cCCcEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCC----CCCCcchhHHHH
Confidence 456899999999998 445566666543 35568999999999999999998765554321 112468888632
Q ss_pred ---ccccCCeEEEEeee
Q 003718 233 ---TMRLGADVIVFSCC 246 (800)
Q Consensus 233 ---smrLG~~V~V~SK~ 246 (800)
.-..|-.+.|.+..
T Consensus 450 k~iv~~~gG~i~v~s~~ 466 (485)
T PRK10815 450 REITEQYEGKISAGDSP 466 (485)
T ss_pred HHHHHHcCCEEEEEECC
Confidence 22467777777664
No 55
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.11 E-value=0.01 Score=74.49 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=60.2
Q ss_pred HHHHHHHhhcchhhhhc--CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH--------hhh-cCccccccC---C
Q 003718 154 LGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---A 219 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~--gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~--------~Ls-fG~SsK~~~---~ 219 (800)
.-.+.|+||||+|.... .++.|.|.+..+ ...|+|.|||.||+-+--.. .|. +-+++|..+ .
T Consensus 54 ~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~----dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~yk 129 (1135)
T PLN03128 54 YKIFDEILVNAADNKQRDPSMDSLKVDIDVE----QNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKK 129 (1135)
T ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEEEEEcC----CCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccce
Confidence 45689999999998532 357777777542 35899999999997652211 111 234445432 2
Q ss_pred cccCcccccccccccccCCeEEEEee
Q 003718 220 NTIGQYGNGFKTSTMRLGADVIVFSC 245 (800)
Q Consensus 220 ~~IGrfG~GfKsAsmrLG~~V~V~SK 245 (800)
..-|+.|+|.+.+-+ +...+.|.++
T Consensus 130 vSGGlhGvGasvvNa-LS~~f~Vev~ 154 (1135)
T PLN03128 130 TTGGRNGYGAKLANI-FSTEFTVETA 154 (1135)
T ss_pred eeccccCCCCeEEEe-ecCeEEEEEE
Confidence 468999999876554 8899999998
No 56
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.10 E-value=0.015 Score=70.29 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEc-------------cCCCceeEEEEECCCCCCHHhHHHhhhcCcccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK 217 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~-------------~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~ 217 (800)
.....+|..||+||+.+.. ....|.|.+... ..++.-.|.|.|||.||+++.+.+.+...++.+.
T Consensus 559 ~~L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~- 636 (828)
T PRK13837 559 AELQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC-
Confidence 4467889999999999853 234567666543 1134457999999999999999998876665542
Q ss_pred CCcccCcccccccc---cccccCCeEEEEeee
Q 003718 218 AANTIGQYGNGFKT---STMRLGADVIVFSCC 246 (800)
Q Consensus 218 ~~~~IGrfG~GfKs---AsmrLG~~V~V~SK~ 246 (800)
+-.|+||.. ..-.+|-.+.|.|..
T Consensus 637 -----~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 637 -----GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred -----CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 556888763 223477888887764
No 57
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.10 E-value=0.009 Score=75.99 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=62.5
Q ss_pred HHHHHHHhhcchhhhhc-----CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH------hhhc---CccccccC-
Q 003718 154 LGAFAELLDNSLDEVCN-----GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH------CMSL---GYSAKSKA- 218 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~-----gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~------~Lsf---G~SsK~~~- 218 (800)
.-.+.|+||||+|...+ .++.|.|.+..+ ...|+|.|||.||.-+--.. -|-| -+++|..+
T Consensus 59 ~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d----~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~ 134 (1388)
T PTZ00108 59 YKIFDEILVNAADNKARDKGGHRMTYIKVTIDEE----NGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDT 134 (1388)
T ss_pred hhhHHHHhhhhhhhhcccCCCCCccEEEEEEecc----CCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCC
Confidence 35689999999998652 367788877542 25799999999997642211 0113 34455432
Q ss_pred --CcccCcccccccccccccCCeEEEEeeec
Q 003718 219 --ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (800)
Q Consensus 219 --~~~IGrfG~GfKsAsmrLG~~V~V~SK~~ 247 (800)
...-|+.|+|.+.+-+ +...++|.+++.
T Consensus 135 ~yKvSGGlhGVGasvvNa-lS~~f~Vev~r~ 164 (1388)
T PTZ00108 135 EKRVTGGRNGFGAKLTNI-FSTKFTVECVDS 164 (1388)
T ss_pred ceeeecccccCCcccccc-ccceEEEEEEEC
Confidence 2468999999876554 899999999986
No 58
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=96.05 E-value=0.018 Score=61.02 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=58.2
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEcc----CC----CceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccC
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINR----KD----GSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIG 223 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~----~~----g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IG 223 (800)
....++..||+||+.+.......|.|...... .+ ....|.|.|||.||+++.+.+.+..+++.+. +
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------~ 310 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC------C
Confidence 46788999999999985323445555442210 00 1236899999999999999888776665542 2
Q ss_pred cccccccc---cccccCCeEEEEeee
Q 003718 224 QYGNGFKT---STMRLGADVIVFSCC 246 (800)
Q Consensus 224 rfG~GfKs---AsmrLG~~V~V~SK~ 246 (800)
-.|+||.. ..-..|-.+.|.+..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 34777752 233467778877653
No 59
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.05 E-value=0.0092 Score=75.92 Aligned_cols=87 Identities=17% Similarity=0.272 Sum_probs=60.1
Q ss_pred HHHHHHHhhcchhhhhc--CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH--------hhh-cCccccccC---C
Q 003718 154 LGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---A 219 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~--gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~--------~Ls-fG~SsK~~~---~ 219 (800)
.-.+-|+||||+|.... .++.|.|.|... ...|+|.|||.||.-+--.. .|. +-+++|..+ .
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~~----~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDVE----QNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEcC----CCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 36789999999997532 257777777532 35799999999997652111 111 234445432 2
Q ss_pred cccCcccccccccccccCCeEEEEee
Q 003718 220 NTIGQYGNGFKTSTMRLGADVIVFSC 245 (800)
Q Consensus 220 ~~IGrfG~GfKsAsmrLG~~V~V~SK 245 (800)
..-|+.|+|.+.+-+ +...++|.++
T Consensus 155 vSGGlhGVGasvvNa-LS~~f~Vev~ 179 (1465)
T PLN03237 155 TTGGRNGYGAKLTNI-FSTEFVIETA 179 (1465)
T ss_pred eeccccccCcccccc-ccCeeEEEEE
Confidence 468999999876554 8999999998
No 60
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.89 E-value=0.0065 Score=71.83 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=57.3
Q ss_pred HHHHhhcchhhhhc---C-CceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH-----------hhh-cCccccccC--
Q 003718 157 FAELLDNSLDEVCN---G-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-----------CMS-LGYSAKSKA-- 218 (800)
Q Consensus 157 IAELIDNAiDA~~~---g-At~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~-----------~Ls-fG~SsK~~~-- 218 (800)
+.|+||||+|...+ + ++.|.|.+. + ..|+|.|||.||+-+--.. .|. +-...|..+
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~-d-----gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~y 123 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK-N-----NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTN 123 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc-C-----CEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcc
Confidence 67999999998654 3 777888775 2 3699999999997643211 011 223344321
Q ss_pred CcccCcccccccccccccCCeEEEEeeecC
Q 003718 219 ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (800)
Q Consensus 219 ~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g 248 (800)
...-|..|+|.+.+- .|...+.|.++..+
T Consensus 124 kvSGGlhGVG~svvN-aLS~~~~V~v~~~~ 152 (602)
T PHA02569 124 RVTGGMNGVGSSLTN-FFSVLFIGETCDGK 152 (602)
T ss_pred eeeCCcCCccceeee-ccchhhheEEEcCC
Confidence 235799999987544 48889998876543
No 61
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.85 E-value=0.027 Score=67.49 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=60.1
Q ss_pred HHHHHHHhhcchhhhhc-----------CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH----------------
Q 003718 154 LGAFAELLDNSLDEVCN-----------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH---------------- 206 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~-----------gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~---------------- 206 (800)
..+|..||.||+|+... ....|.|..... ++.-.|.|.|||.||+++.+..
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~--~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~ 464 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQ--GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDE 464 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHH
Confidence 33457899999998311 012466665443 4566899999999999988752
Q ss_pred -----hhhcCccccccCCcccCccccccc---ccccccCCeEEEEeee
Q 003718 207 -----CMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 246 (800)
Q Consensus 207 -----~LsfG~SsK~~~~~~IGrfG~GfK---sAsmrLG~~V~V~SK~ 246 (800)
.+..|++.+... ..+.-.|+||. ...-.++-.+.|-|+.
T Consensus 465 e~~~lIF~pgfst~~~~-~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 465 EVGMLIFAPGFSTAEQV-TDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred HHHHHhhcCCccccccc-ccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 344577776422 23455689985 3344688899999874
No 62
>PRK10337 sensor protein QseC; Provisional
Probab=95.84 E-value=0.021 Score=62.74 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=57.1
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
..+..++.+||+||+.+... ...|.|.+.. ..|+|.|||.||+++++...+.-.+..+. ...+.+|+|+.
T Consensus 351 ~~l~~vl~Nli~NA~k~~~~-~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~ 420 (449)
T PRK10337 351 LLLSLLVRNLLDNAIRYSPQ-GSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHHHhhCCC-CCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHH
Confidence 34566899999999998321 2345555432 36999999999999999998764443221 12345788876
Q ss_pred c---cccccCCeEEEEeee
Q 003718 231 T---STMRLGADVIVFSCC 246 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~ 246 (800)
. ..-+.|-++.|-+..
T Consensus 421 iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 3 223467777777654
No 63
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.78 E-value=0.025 Score=67.83 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=58.9
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccC-CC--ceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DG--SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~-~g--~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~G 228 (800)
+...+|..||+||+.+... ..|.|.+..... ++ .-.|.|.|||.||+++++.+.+...+..........|-.|+|
T Consensus 408 ~l~~vl~NLl~NAik~~~~--g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLG 485 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTES--GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHHhhcCCC--CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchh
Confidence 4567899999999998543 335554432211 11 346899999999999999998763332211112234567888
Q ss_pred ccc---cccccCCeEEEEeee
Q 003718 229 FKT---STMRLGADVIVFSCC 246 (800)
Q Consensus 229 fKs---AsmrLG~~V~V~SK~ 246 (800)
|.. ..-.+|-.+.|.|..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecC
Confidence 752 223467888888875
No 64
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.69 E-value=0.028 Score=67.60 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=61.1
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.++..+|..||+||+.+.. ...|.|.+... ++.-.|.|.|||.||+++++.+.+...+..+. ..+-.|+||.
T Consensus 512 ~~l~~il~NLl~NAik~~~--~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~ 583 (921)
T PRK15347 512 LRLRQILVNLLGNAVKFTE--TGGIRLRVKRH--EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGLT 583 (921)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCCEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHHH
Confidence 4466789999999999843 33467766543 35678999999999999999998864443331 2345688876
Q ss_pred ccc---cccCCeEEEEeee
Q 003718 231 TST---MRLGADVIVFSCC 246 (800)
Q Consensus 231 sAs---mrLG~~V~V~SK~ 246 (800)
.+- -.+|-.+.|.|..
T Consensus 584 i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 584 IASSLAKMMGGELTLFSTP 602 (921)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 321 2356678877764
No 65
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.52 E-value=0.038 Score=65.91 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCcccccc-CCcccCcccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK-AANTIGQYGNGF 229 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~-~~~~IGrfG~Gf 229 (800)
.....+|..||+||+++.. ...|.|.+.... ++.-.|.|.|||.||+++++.+.+...++.|.. .....+--|+|+
T Consensus 397 ~~l~qvl~NLl~NAik~~~--~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 397 TRLRQILWNLISNAVKFTQ--QGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 3456789999999999953 344666665432 345689999999999999999988755554321 222245567777
Q ss_pred cc---cccccCCeEEEEeee
Q 003718 230 KT---STMRLGADVIVFSCC 246 (800)
Q Consensus 230 Ks---AsmrLG~~V~V~SK~ 246 (800)
.. ..-.+|-.+.|.|..
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 52 122367888888764
No 66
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.44 E-value=0.042 Score=66.32 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=61.9
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.+...++..||+||+.+.. ...|.|.+... ++.-.|.|.|||.||+++++.+.+...+.... ..|-.|+|+.
T Consensus 560 ~~l~qil~NLl~NAik~~~--~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~ 631 (914)
T PRK11466 560 RRIRQVITNLLSNALRFTD--EGSIVLRSRTD--GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGLT 631 (914)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCeEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHhchhhcCCC----CCCCCcccHH
Confidence 4566789999999999843 34577766543 34567999999999999999998764443221 2355788876
Q ss_pred cc---ccccCCeEEEEeee
Q 003718 231 TS---TMRLGADVIVFSCC 246 (800)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (800)
.+ .-.+|-.+.|-|..
T Consensus 632 i~~~l~~~~gG~i~v~s~~ 650 (914)
T PRK11466 632 ISSRLAQAMGGELSATSTP 650 (914)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 23467888888764
No 67
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.18 E-value=0.064 Score=50.26 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~--~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
+-.|+.|||.||+.+.- .....|.|.+... ++.-.|.|.|+|.||+. +...+...++.+. ..+..|+|+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~--~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~ 111 (137)
T TIGR01925 40 IKTAVSEAVTNAIIHGYEENCEGVVYISATIE--DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFT 111 (137)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe--CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHH
Confidence 34689999999997511 0134567766543 35678999999999973 4445443333331 2234678876
Q ss_pred ccccccCCeEEEEee
Q 003718 231 TSTMRLGADVIVFSC 245 (800)
Q Consensus 231 sAsmrLG~~V~V~SK 245 (800)
... +++.++.+.+.
T Consensus 112 lv~-~~~~~l~~~~~ 125 (137)
T TIGR01925 112 VME-NFMDDVSVDSE 125 (137)
T ss_pred HHH-HhCCcEEEEEC
Confidence 433 35667777665
No 68
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.07 E-value=0.058 Score=65.41 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCc-eeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGS-RMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~-~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (800)
.+...+|..||+||+.+.. ...|.|.+.... +. -.|.|.|+|.||+++++.+.+..-+..+ .....|-.|+||
T Consensus 578 ~~l~~il~nLi~NAik~~~--~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL 651 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFTD--RGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGL 651 (968)
T ss_pred HHHHHHHHHHHHHHHhhCC--CCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHH
Confidence 4566789999999999843 345777665543 33 6899999999999999999876333322 122335568888
Q ss_pred ccc---ccccCCeEEEEeee
Q 003718 230 KTS---TMRLGADVIVFSCC 246 (800)
Q Consensus 230 KsA---smrLG~~V~V~SK~ 246 (800)
..+ .-.+|-.+.|.|..
T Consensus 652 ~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 652 AISQRLVEAMDGELGVESEL 671 (968)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 632 22456777777764
No 69
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.07 E-value=0.034 Score=65.27 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCcccc
Q 003718 153 ALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAK 215 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK 215 (800)
.-..+-.||.||+||...- ...|+|..... ++.-.|.|.|||+|+.++-+.++|..-+++|
T Consensus 498 LeQVLvNLl~NALDA~~~~~~~~i~i~~~~~--~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 498 LEQVLVNLLQNALDAMAGQEDRRLSIRAQRE--GGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeeEEEEEec--CCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 3467899999999997531 23466666443 5778999999999999999999887555555
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=95.03 E-value=0.047 Score=67.22 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=61.7
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.....++..||+||+.+... ...|.|.+... ++.-.|.|.|||.||+++++.+.+...++.+.. ...+-.|+|+.
T Consensus 777 ~~L~qVL~NLL~NAik~s~~-g~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLGL~ 851 (895)
T PRK10490 777 PLFERVLINLLENAVKYAGA-QAEIGIDAHVE--GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLGLA 851 (895)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHHHH
Confidence 45668899999999998432 34566666543 356789999999999999999988754443321 12234677776
Q ss_pred c---cccccCCeEEEEeee
Q 003718 231 T---STMRLGADVIVFSCC 246 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~ 246 (800)
. ..-.+|-++.+.+..
T Consensus 852 Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 852 ICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 3 122367788887764
No 71
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.88 E-value=0.062 Score=66.39 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=61.3
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccC-CCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~-~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (800)
...-.+|..||.||+.+... ..|.|.+..... ++.-.|.|.|+|.||+++++.+.+..-++.+... ..-+--|+||
T Consensus 564 ~~L~QVL~NLL~NAik~t~~--G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~-~~~~GtGLGL 640 (894)
T PRK10618 564 DALRKILLLLLNYAITTTAY--GKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGD-RYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCC-CCCCCcChhH
Confidence 34567899999999998542 346666644321 2456799999999999999999876334433211 1122357776
Q ss_pred cc---cccccCCeEEEEeee
Q 003718 230 KT---STMRLGADVIVFSCC 246 (800)
Q Consensus 230 Ks---AsmrLG~~V~V~SK~ 246 (800)
.. ..-.+|-.+.|-|..
T Consensus 641 aI~k~Lve~~GG~I~v~S~~ 660 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSRE 660 (894)
T ss_pred HHHHHHHHHcCCEEEEEECC
Confidence 42 222478888888875
No 72
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.82 E-value=0.043 Score=53.93 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=54.1
Q ss_pred HHHHHHhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccccc
Q 003718 155 GAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (800)
Q Consensus 155 ~AIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (800)
-|+.|++-||+.....+. ..|.|.+... ++.-.|.|.|+|.||+++.+...+...+..+...... .-|.|+...
T Consensus 45 lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~~~--~~G~GL~li 120 (161)
T PRK04069 45 IAVSEACTNAVQHAYKEDEVGEIHIRFEIY--EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIEDLR--EGGLGLFLI 120 (161)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEEE--CCEEEEEEEECCcCCChHHhccccCCCCCCCcccccC--CCceeHHHH
Confidence 589999999999832221 3466666543 4678999999999999988876654332222111111 237787655
Q ss_pred ccccCCeEEEEe
Q 003718 233 TMRLGADVIVFS 244 (800)
Q Consensus 233 smrLG~~V~V~S 244 (800)
- ++..++.+.+
T Consensus 121 ~-~l~d~v~~~~ 131 (161)
T PRK04069 121 E-TLMDDVTVYK 131 (161)
T ss_pred H-HHHHhEEEEc
Confidence 4 3667776664
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.77 E-value=0.062 Score=52.95 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 153 ALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.--|+.|++.||+...-.+ ...|.|.+... ++.-.|.|.|+|.|++++.+...+....... .......-|.|+.
T Consensus 43 l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~--~~~~~~~~G~GL~ 118 (159)
T TIGR01924 43 LKIAVSEACTNAVKHAYKEGENGEIGISFHIY--EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSE--PIDDLREGGLGLF 118 (159)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe--CCEEEEEEEEcccccCchhhccccCCCCCCC--CcccCCCCccCHH
Confidence 3358999999999983211 13577776554 4667899999999999988775432211111 1111223488887
Q ss_pred ccccccCCeEEEEe
Q 003718 231 TSTMRLGADVIVFS 244 (800)
Q Consensus 231 sAsmrLG~~V~V~S 244 (800)
..- ++..++.+.+
T Consensus 119 Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 119 LIE-TLMDEVEVYE 131 (159)
T ss_pred HHH-HhccEEEEEe
Confidence 654 5788887764
No 74
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=94.72 E-value=1.2 Score=50.36 Aligned_cols=67 Identities=34% Similarity=0.415 Sum_probs=43.8
Q ss_pred hhhhhhhchHHHHHHHHhHHh------------------HHHHHHhhhcHHHHHHHHHH----HHHHHHHHHHHH---HH
Q 003718 723 LGQLKQENHELKKRLEKKEGE------------------LQEERERCRSLEAQLKVMQQ----TIEELNKEQESL---ID 777 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~------------------~~~e~~~~k~l~~~~~~~~~----~l~~~~k~~~~l---i~ 777 (800)
+..+.+|..|.|+-...+|++ ||.||=++..||+||-++-. .+-.|++||.+. |+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555544 58888899999999966533 455556666544 55
Q ss_pred HHHHHHhhHHHH
Q 003718 778 IFAEERDRRERE 789 (800)
Q Consensus 778 ~f~eer~~~~~e 789 (800)
--+-||.|-=||
T Consensus 342 YQsyERaRdIqE 353 (455)
T KOG3850|consen 342 YQSYERARDIQE 353 (455)
T ss_pred HHHHHHHHHHHH
Confidence 667777765554
No 75
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.63 E-value=0.086 Score=65.21 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=61.6
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
...-.+|..||+||+.+.. ...|.|.+... ++.-.|.|.|+|.||+++++.+.+...+..........+-.|+||.
T Consensus 561 ~~L~qvl~NLl~NAik~t~--~G~I~I~v~~~--~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~ 636 (924)
T PRK10841 561 MRLQQVISNLLSNAIKFTD--TGCIVLHVRVD--GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHHHhhCC--CCcEEEEEEEe--CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHH
Confidence 4456789999999999853 23466655443 3556799999999999999999876433322111122344688876
Q ss_pred cc---ccccCCeEEEEeee
Q 003718 231 TS---TMRLGADVIVFSCC 246 (800)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (800)
.+ .-.+|-.+.|.|..
T Consensus 637 I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEP 655 (924)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 32 22467788888864
No 76
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.35 E-value=0.088 Score=48.49 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 153 ALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
..-|+.|++-||+.....+. ..|.|.+... .+.-.|.|.|+|.|+++..+......+. .....-|.|+.
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~--~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~ 102 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEVD--PDRLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLF 102 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--CCEEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHH
Confidence 44699999999999843322 3455555444 4567899999999999997765432111 23344477776
Q ss_pred ccccccCCeEEE
Q 003718 231 TSTMRLGADVIV 242 (800)
Q Consensus 231 sAsmrLG~~V~V 242 (800)
... +++.++.+
T Consensus 103 li~-~l~D~~~~ 113 (125)
T PF13581_consen 103 LIR-SLMDEVDY 113 (125)
T ss_pred HHH-HHHcEEEE
Confidence 544 48888888
No 77
>PRK13557 histidine kinase; Provisional
Probab=94.34 E-value=0.12 Score=57.52 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=60.0
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEc-------------cCCCceeEEEEECCCCCCHHhHHHhhhcCccccccC
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA 218 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~-------------~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~ 218 (800)
.+..++..||.||+++... ...|.|..... ..++.-.|.|.|||.||+++.+..++...++.+.
T Consensus 277 ~l~~vl~nll~NA~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~-- 353 (540)
T PRK13557 277 QAEVALLNVLINARDAMPE-GGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE-- 353 (540)
T ss_pred HHHHHHHHHHHHHHHhccc-CCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC--
Confidence 3556899999999998543 23355544321 0123457999999999999999998876665542
Q ss_pred CcccCcccccccc---cccccCCeEEEEeee
Q 003718 219 ANTIGQYGNGFKT---STMRLGADVIVFSCC 246 (800)
Q Consensus 219 ~~~IGrfG~GfKs---AsmrLG~~V~V~SK~ 246 (800)
..+-.|+||.. ..-.+|-.+.|.+..
T Consensus 354 --~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 354 --EGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred --CCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 22345777652 233478888888764
No 78
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.19 E-value=0.087 Score=65.81 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=58.8
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEE--ccC-CCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLI--NRK-DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~--~~~-~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~ 227 (800)
.....+|..||+||+++...+ .+.|.+.. ... ...-.|.|.|||.||+++++.+.+...++.+. ...-+-.|+
T Consensus 827 ~~l~qvl~NLl~NAik~~~~g--~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~--~~~~~G~GL 902 (1197)
T PRK09959 827 QAFKQVLSNLLSNALKFTTEG--AVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGL 902 (1197)
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc--CCCCCCcCc
Confidence 356679999999999995433 33443321 111 12245899999999999999998875444332 112234688
Q ss_pred ccccc---ccccCCeEEEEeee
Q 003718 228 GFKTS---TMRLGADVIVFSCC 246 (800)
Q Consensus 228 GfKsA---smrLG~~V~V~SK~ 246 (800)
||..+ .-.+|-.+.|.+..
T Consensus 903 GL~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 903 GLMICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred hHHHHHHHHHHcCCEEEEEeCC
Confidence 87632 22367778887764
No 79
>PRK03660 anti-sigma F factor; Provisional
Probab=93.67 E-value=0.23 Score=46.94 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcchhhhhcC-C-ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 153 ALGAFAELLDNSLDEVCNG-A-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~g-A-t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
+.-|+.||+.||+...... . ..|.|.+... ++.-.|.|.|+|.||++ +...+...++.+. .-+.-|+|+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~--~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~ 111 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE--EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFT 111 (146)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHH
Confidence 3468999999999752111 1 3466665443 35567999999999986 3344433333221 1123588887
Q ss_pred ccccccCCeEEEEee
Q 003718 231 TSTMRLGADVIVFSC 245 (800)
Q Consensus 231 sAsmrLG~~V~V~SK 245 (800)
.+. +++..+.+-+.
T Consensus 112 i~~-~~~~~i~~~~~ 125 (146)
T PRK03660 112 VME-SFMDEVEVESE 125 (146)
T ss_pred HHH-HhCCeEEEEec
Confidence 543 46777766554
No 80
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=93.45 E-value=0.17 Score=58.53 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=53.0
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (800)
.+.+.+|.|+|.||+.+. .++.|.|.+... ++.-.|.|.|||.||+++.- + .-|.|+.
T Consensus 468 ~~l~~il~ell~NA~kha--~a~~i~V~~~~~--~~~~~l~V~D~G~Gi~~~~~----------~--------~~glGL~ 525 (569)
T PRK10600 468 IHLLQIAREALSNALKHA--QASEVVVTVAQN--QNQVKLSVQDNGCGVPENAE----------R--------SNHYGLI 525 (569)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEEc--CCEEEEEEEECCCCCCcccc----------C--------CCCccHH
Confidence 457788999999999973 456777777543 35678999999999988631 0 1255654
Q ss_pred c---cccccCCeEEEEeeec
Q 003718 231 T---STMRLGADVIVFSCCC 247 (800)
Q Consensus 231 s---AsmrLG~~V~V~SK~~ 247 (800)
. -.-++|-.+.|.+...
T Consensus 526 i~~~~~~~lgG~l~i~s~~~ 545 (569)
T PRK10600 526 IMRDRAQSLRGDCRVRRRES 545 (569)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 2 2235888999988753
No 81
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=92.62 E-value=0.24 Score=55.85 Aligned_cols=88 Identities=20% Similarity=0.344 Sum_probs=61.5
Q ss_pred HHHHHhhcchhhhhc-------CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccC------Cccc
Q 003718 156 AFAELLDNSLDEVCN-------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTI 222 (800)
Q Consensus 156 AIAELIDNAiDA~~~-------gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~------~~~I 222 (800)
.+-||..||+.|... +-..|.|.+..+ +..-.|.|.|-|+|+.++++..++++++|.-... ...+
T Consensus 264 mlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~pl 341 (414)
T KOG0787|consen 264 MLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPL 341 (414)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcc
Confidence 689999999999865 123477777654 3567899999999999999999999999875321 2345
Q ss_pred Ccccccccccc---cccCCeEEEEee
Q 003718 223 GQYGNGFKTST---MRLGADVIVFSC 245 (800)
Q Consensus 223 GrfG~GfKsAs---mrLG~~V~V~SK 245 (800)
--||-|+..+- =..|-++.++|-
T Consensus 342 aGfG~GLPisrlYa~yf~Gdl~L~Sl 367 (414)
T KOG0787|consen 342 AGFGFGLPISRLYARYFGGDLKLQSL 367 (414)
T ss_pred cccccCCcHHHHHHHHhCCCeeEEee
Confidence 56777765321 113455555554
No 82
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.42 E-value=1 Score=44.07 Aligned_cols=74 Identities=30% Similarity=0.503 Sum_probs=45.8
Q ss_pred hhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHhhhh
Q 003718 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI-------DIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li-------~~f~eer~~~~~e~~~l~~kl 797 (800)
+|+..+..|++++...|-++..-..+.+.|..++..++.++.....|-..|. .-+.-|..|+++|-+.|+++|
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444433336667777777666666655555544444 446789999999999999987
Q ss_pred c
Q 003718 798 K 798 (800)
Q Consensus 798 ~ 798 (800)
.
T Consensus 150 ~ 150 (151)
T PF11559_consen 150 N 150 (151)
T ss_pred c
Confidence 4
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.31 E-value=0.4 Score=58.07 Aligned_cols=67 Identities=30% Similarity=0.458 Sum_probs=36.1
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~ 795 (800)
-|.+|++||.+|..||..+.-..|+|+....+||-+|.+-+++-..+. .-++|||++|-+||+.-.+
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lE-------kQL~eErk~r~~ee~~aar 527 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLE-------KQLQEERKARKEEEEKAAR 527 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHhhhh
Confidence 355566666666666655555555555555555555543333332222 2366777777776665443
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.12 E-value=0.73 Score=44.55 Aligned_cols=75 Identities=32% Similarity=0.515 Sum_probs=60.9
Q ss_pred cccchhhhhhhhhchHHHHHHHHhHHh---HHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 717 CSLGANLGQLKQENHELKKRLEKKEGE---LQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~-------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
..+.+.|+++..|...|+++|.+++.. +..|+ |..+.+..++..++++++++++..+++..+|.|-
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK---- 94 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK---- 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----
Confidence 356778999999999999999988776 34444 7778889999999999999999999999999873
Q ss_pred HHHHHHHhh
Q 003718 787 EREEENLRK 795 (800)
Q Consensus 787 ~~e~~~l~~ 795 (800)
..|.+.||.
T Consensus 95 ~E~veEL~~ 103 (120)
T PF12325_consen 95 SEEVEELRA 103 (120)
T ss_pred HHHHHHHHH
Confidence 344555554
No 85
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=92.11 E-value=0.15 Score=58.08 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=46.6
Q ss_pred HHHHHhhcchhhhhc-CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccccccc
Q 003718 156 AFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM 234 (800)
Q Consensus 156 AIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAsm 234 (800)
.|-=|||||+-+... ......|.+.....++.-.+.|.|||.||++..+.....-|... -|+|+...--
T Consensus 354 ~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r----------~giGL~Nv~~ 423 (456)
T COG2972 354 VLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR----------SGIGLSNVKE 423 (456)
T ss_pred HHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc----------ccccHHHHHH
Confidence 678899999999421 12334555544433567889999999999999988654222111 5888875444
Q ss_pred cc
Q 003718 235 RL 236 (800)
Q Consensus 235 rL 236 (800)
|+
T Consensus 424 rl 425 (456)
T COG2972 424 RL 425 (456)
T ss_pred HH
Confidence 43
No 86
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=91.68 E-value=2.9 Score=47.84 Aligned_cols=67 Identities=34% Similarity=0.403 Sum_probs=39.3
Q ss_pred hhhhhhhchHHHHHHHHhHHh-----------HHHHHHhhhcHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHh
Q 003718 723 LGQLKQENHELKKRLEKKEGE-----------LQEERERCRSLEAQLKVMQQ--TIEELNKEQE-----SLIDIFAEERD 784 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~-----------~~~e~~~~k~l~~~~~~~~~--~l~~~~k~~~-----~li~~f~eer~ 784 (800)
|..++++...|.+.+.++++. ||.|+.++..||+||.|+-+ |-|-.+=.|+ .=++--+.||.
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRa 300 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERA 300 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444443 47888999999999977655 3333333333 23455788887
Q ss_pred hHHHH
Q 003718 785 RRERE 789 (800)
Q Consensus 785 ~~~~e 789 (800)
|-=+|
T Consensus 301 Rdi~E 305 (395)
T PF10267_consen 301 RDIWE 305 (395)
T ss_pred hHHHH
Confidence 65444
No 87
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=91.37 E-value=0.38 Score=55.61 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccc
Q 003718 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKS 216 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~ 216 (800)
+-.++-.|+-||+||+...|..|+|+..... .+..+|.|.|||.|-..+-+.+.+..-+++|.
T Consensus 565 ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~-~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 565 IEQVLVNLIVNALDASTHFAPWIKLIALGTE-QEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEeecCc-ccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 4457889999999998777777777665432 56788999999999999999999986666663
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.34 E-value=0.38 Score=58.78 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=45.3
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhh-cCcccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAK 215 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~Ls-fG~SsK 215 (800)
-+-.+|..|||||+-..- ..+.|.|..... ...-.+.|.|+|.|++++++.+.|. |-+-.|
T Consensus 775 LieQVLiNLleNA~Kyap-~~s~I~I~~~~~--~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 775 LIEQVLINLLENALKYAP-PGSEIRINAGVE--RENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred HHHHHHHHHHHHHHhhCC-CCCeEEEEEEEe--cceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 345789999999999822 124466666543 4677899999999999999999875 544444
No 89
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.95 E-value=0.32 Score=56.05 Aligned_cols=70 Identities=26% Similarity=0.363 Sum_probs=48.7
Q ss_pred cHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccc
Q 003718 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (800)
-.+.++.|+|+||+.+. .+..|.|.+... ++.-.|.|.|||.||++++. ..|+|+..
T Consensus 410 ~L~ril~nlL~NAiKha--~~~~I~I~l~~~--~~~i~l~V~DnG~Gi~~~~~-------------------~~GLGL~i 466 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA--DASAVTLQGWQQ--DERLMLVIEDDGSGLPPGSG-------------------QQGFGLRG 466 (495)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEEc--CCEEEEEEEECCCCCCcCCC-------------------CCCCcHHH
Confidence 35568899999999983 356677776543 35678999999999987531 13777653
Q ss_pred c---ccccCCeEEEEe
Q 003718 232 S---TMRLGADVIVFS 244 (800)
Q Consensus 232 A---smrLG~~V~V~S 244 (800)
+ .-.+|-++.+.|
T Consensus 467 vr~iv~~~GG~i~v~S 482 (495)
T PRK11644 467 MRERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHHcCCEEEEEc
Confidence 1 224677777776
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.80 E-value=1.2 Score=52.62 Aligned_cols=68 Identities=37% Similarity=0.495 Sum_probs=59.1
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
|.....+|++++.+|++++.+++.+|..+.++|..|..+.+++....+.+.+|.+.|..-.++-+.|-
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457789999999999999999999999999999999999999999999999999888777766653
No 91
>PRK13560 hypothetical protein; Provisional
Probab=90.74 E-value=0.26 Score=57.77 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=45.6
Q ss_pred HHHHHhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccccc-
Q 003718 156 AFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS- 232 (800)
Q Consensus 156 AIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA- 232 (800)
.|.+||.||+.+...+ +..|.|.+.... ++.-.|.|.|||.||+++.. +. .| -|+||..+
T Consensus 715 il~NLl~NAik~~~~~~~~~~i~i~~~~~~-~~~v~i~V~D~G~GI~~~~~-----~~----------~~-~gLGLai~~ 777 (807)
T PRK13560 715 IISELLSNALKHAFPDGAAGNIKVEIREQG-DGMVNLCVADDGIGLPAGFD-----FR----------AA-ETLGLQLVC 777 (807)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEEEcC-CCEEEEEEEeCCCcCCcccc-----cc----------cc-CCccHHHHH
Confidence 6789999999974222 234666554321 34568999999999998631 00 01 15676522
Q ss_pred --ccccCCeEEEEee
Q 003718 233 --TMRLGADVIVFSC 245 (800)
Q Consensus 233 --smrLG~~V~V~SK 245 (800)
.=..|-.+.|-|.
T Consensus 778 ~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 778 ALVKQLDGEIALDSR 792 (807)
T ss_pred HHHHHcCCEEEEEcC
Confidence 2246777888774
No 92
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.59 E-value=0.34 Score=53.02 Aligned_cols=75 Identities=27% Similarity=0.364 Sum_probs=55.1
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccc-ccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYG-NGF 229 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG-~Gf 229 (800)
.-+|-++.|.|-|++-. .+|+.|.|.+... ++.-.|.|.|||.|-+++... |-|| .|+
T Consensus 278 ~~l~rivQEaltN~~rH--a~A~~v~V~l~~~--~~~l~l~V~DnG~Gf~~~~~~-----------------~~~GL~~m 336 (365)
T COG4585 278 DALFRIVQEALTNAIRH--AQATEVRVTLERT--DDELRLEVIDNGVGFDPDKEG-----------------GGFGLLGM 336 (365)
T ss_pred HHHHHHHHHHHHHHHhc--cCCceEEEEEEEc--CCEEEEEEEECCcCCCccccC-----------------CCcchhhH
Confidence 55778899999999998 3689999988765 356899999999997766532 2233 233
Q ss_pred cccccccCCeEEEEeee
Q 003718 230 KTSTMRLGADVIVFSCC 246 (800)
Q Consensus 230 KsAsmrLG~~V~V~SK~ 246 (800)
+-=...+|-.+.|.|..
T Consensus 337 reRv~~lgG~l~i~S~~ 353 (365)
T COG4585 337 RERVEALGGTLTIDSAP 353 (365)
T ss_pred HHHHHHcCCEEEEEecC
Confidence 32233488889999886
No 93
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.50 E-value=1.1 Score=54.60 Aligned_cols=90 Identities=20% Similarity=0.385 Sum_probs=61.2
Q ss_pred HHHHHHhhcchhhhhc--------C---CceeEEEEEEccCCCceeEEEEECCCCCCHHhHHH-hhhc------------
Q 003718 155 GAFAELLDNSLDEVCN--------G---ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSL------------ 210 (800)
Q Consensus 155 ~AIAELIDNAiDA~~~--------g---At~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~-~Lsf------------ 210 (800)
..|-.||-||+|.-.. | ...|.+.- .-.++.-.|.|.|||.|||++.|.. ++.-
T Consensus 435 dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A--~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS 512 (716)
T COG0643 435 DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSA--YHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS 512 (716)
T ss_pred ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEE--EcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCC
Confidence 3466799999997211 1 12244443 3336788999999999999998874 4443
Q ss_pred -----------CccccccCCcccCccccccc---ccccccCCeEEEEeeec
Q 003718 211 -----------GYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCCC 247 (800)
Q Consensus 211 -----------G~SsK~~~~~~IGrfG~GfK---sAsmrLG~~V~V~SK~~ 247 (800)
|||.+. ..+.+.-.|+|+= +..-+||-.|.|-|+..
T Consensus 513 d~Ei~~LIF~PGFSTa~-~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G 562 (716)
T COG0643 513 DEEILNLIFAPGFSTAE-QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPG 562 (716)
T ss_pred HHHHHHHHhcCCCCcch-hhhcccCCccCHHHHHHHHHHcCCEEEEEecCC
Confidence 444442 2245666799984 67778999999999864
No 94
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=87.99 E-value=0.78 Score=54.67 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred HHHHHHHhhcchhhhhcC-Ccee---EEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCcccc
Q 003718 154 LGAFAELLDNSLDEVCNG-ATYS---NIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAK 215 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~g-At~V---~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK 215 (800)
-.|+-.||.||.+|+... +... .|.+..+..+|.-.+.|.|||.|.+.+.+++++..--+.+
T Consensus 602 ~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr 667 (712)
T COG5000 602 GQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTR 667 (712)
T ss_pred HHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecc
Confidence 468899999999997541 1111 3444444457889999999999999999999986443333
No 95
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.84 E-value=3.4 Score=43.33 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.5
Q ss_pred ccccchhhhhhhhhchHHHHHHHHhHHhHH
Q 003718 716 DCSLGANLGQLKQENHELKKRLEKKEGELQ 745 (800)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (800)
.|++...+.+|++|..+|+++|.....+..
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356677788999999999988888776654
No 96
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.37 E-value=3.5 Score=44.04 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=43.8
Q ss_pred hchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHhhhhc
Q 003718 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l---i~~f~eer~~~~~e~~~l~~kl~ 798 (800)
+...|||++....+.|+.+...+..|..+++++|.++|+.+.+.+.| .-.+-|+++++--|...|++++.
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 45577777777666665555444445555555555554444333333 23457889999999999999863
No 97
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=87.21 E-value=0.69 Score=54.33 Aligned_cols=75 Identities=27% Similarity=0.397 Sum_probs=57.1
Q ss_pred HHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCccccccc-cc
Q 003718 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK-TS 232 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK-sA 232 (800)
..-++|-+.||+-.. .|+.|+|.+..+. |...+.|.|||+|++..+ ...|.||+-.- ==
T Consensus 483 LqIvREAlsNa~KHa--~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~~----------------e~~gHyGL~IM~ER 542 (574)
T COG3850 483 LQIVREALSNAIKHA--QASEIKVTVSQND--GQVTLTVEDNGVGIDEAA----------------EPSGHYGLNIMRER 542 (574)
T ss_pred HHHHHHHHHHHHHhc--ccCeEEEEEEecC--CeEEEEEeeCCcCCCCcc----------------CCCCCcchHHHHHH
Confidence 346999999999983 6899999887764 788999999999987652 35678886532 11
Q ss_pred ccccCCeEEEEeeecC
Q 003718 233 TMRLGADVIVFSCCCG 248 (800)
Q Consensus 233 smrLG~~V~V~SK~~g 248 (800)
.-+|+..+.|-.|..|
T Consensus 543 A~~L~~~L~i~~~~~g 558 (574)
T COG3850 543 AQRLGGQLRIRRREGG 558 (574)
T ss_pred HHHhcCeEEEeecCCC
Confidence 2358899999888654
No 98
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=86.76 E-value=3.2 Score=47.53 Aligned_cols=79 Identities=32% Similarity=0.426 Sum_probs=52.1
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhH--HHHHHhhhcHH-----HHH--HH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGEL--QEERERCRSLE-----AQL--KV----MQQTIEELNKEQESLIDIFAEERDR 785 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~k~l~-----~~~--~~----~~~~l~~~~k~~~~li~~f~eer~~ 785 (800)
|-..++||++|-..|..-| .+|.+. ++=+.|.|+|+ +|. +. +-+--+++.+|||+|++-+=---+.
T Consensus 134 Lsrkl~qLr~ek~~lEq~l-eqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdk 212 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLL-EQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDK 212 (552)
T ss_pred hhHHHHHHHhhhccHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3345999999888885444 444432 11123333332 222 22 2223357889999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 003718 786 REREEENLRKKIK 798 (800)
Q Consensus 786 ~~~e~~~l~~kl~ 798 (800)
-++|..-|.+||.
T Consensus 213 Le~ekr~Lq~KlD 225 (552)
T KOG2129|consen 213 LEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999984
No 99
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.22 E-value=1.1 Score=46.84 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=33.0
Q ss_pred HHHHHhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEECCCCCCHH
Q 003718 156 AFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (800)
Q Consensus 156 AIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~GM~~e 202 (800)
+|-||+-||+.+-.-+ ...|.|.+.....++...+.|+|||.|+..+
T Consensus 126 iv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 126 IVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 5899999999983221 3456777665432114799999999997654
No 100
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.41 E-value=2.4 Score=44.84 Aligned_cols=62 Identities=31% Similarity=0.473 Sum_probs=35.2
Q ss_pred hhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
|..||.++++.+.+++++++..-.+-+.++++...+++|.|++++|= ||--.|-++|++.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey-----------drLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY-----------DRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH-----------HHHHHHHHHHHHHHh
Confidence 44555666666666666665555555555666666666666655554 333444556666554
No 101
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.91 E-value=4.1 Score=41.97 Aligned_cols=76 Identities=25% Similarity=0.379 Sum_probs=52.9
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHH------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEER------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l 793 (800)
...+..|+++..++++++..+++.+..+. +.+..|.+++++++++++++.+|.+.+.+.=.+.-..-.++-+.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44577888888888888888887775444 667778888899999999988888866554444444444444444
Q ss_pred hh
Q 003718 794 RK 795 (800)
Q Consensus 794 ~~ 795 (800)
+.
T Consensus 148 ~~ 149 (188)
T PF03962_consen 148 KE 149 (188)
T ss_pred HH
Confidence 43
No 102
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.98 E-value=5.5 Score=42.26 Aligned_cols=56 Identities=29% Similarity=0.335 Sum_probs=42.4
Q ss_pred hhhhchHHHHHHHH---hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 726 LKQENHELKKRLEK---KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 726 ~~~~~~~~~~~~~~---~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
+.+||..||+-+.. +|++.....++-+.|+++++.-+.+||.+++.-++|.--+.+
T Consensus 132 ~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 132 AMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477777776655 355555666778889999999999999999999998876654
No 103
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=83.94 E-value=3 Score=41.24 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred ccHHHHHHHHhhcchhhhhcCC---ceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccc
Q 003718 151 KWALGAFAELLDNSLDEVCNGA---TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gA---t~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~ 227 (800)
...-.|+.|++.|++.+.-+.. ..|.|.+... ++.-.++|.|-| .+.+++...+..++.... .-..| |.
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--~~~~~i~i~D~G--~~~~~~~~~~~~~~~~~~--~~~~~--G~ 110 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--DGKLEIRIWDQG--PGIEDLEESLGPGDTTAE--GLQEG--GL 110 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--CCeEEEEEEeCC--CCCCCHHHhcCCCCCCCc--ccccc--cc
Confidence 4556799999999999843212 3466666554 467899999999 455566666655633221 12233 66
Q ss_pred cccccccccCCeEEEEeee
Q 003718 228 GFKTSTMRLGADVIVFSCC 246 (800)
Q Consensus 228 GfKsAsmrLG~~V~V~SK~ 246 (800)
||. ...++..+|.+....
T Consensus 111 Gl~-l~~~~~D~~~~~~~~ 128 (146)
T COG2172 111 GLF-LAKRLMDEFSYERSE 128 (146)
T ss_pred cHH-HHhhhheeEEEEecc
Confidence 654 344577888777543
No 104
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=83.66 E-value=1.5 Score=49.87 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHH
Q 003718 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~e 202 (800)
....+.+|+.||+.+. .+..|.|.+.... ++.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~~-~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTNP-DGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEcC-CCEEEEEEEECCcCcCCC
Confidence 4467899999999973 3455666665431 345679999999999874
No 105
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=83.35 E-value=6.2 Score=41.81 Aligned_cols=34 Identities=38% Similarity=0.623 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 765 IEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 765 l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
..++-++-..|..+|.+||.-|.+.|+++.+||.
T Consensus 123 ~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~ 156 (247)
T PF06705_consen 123 NQELVRELNELQEAFENERNEREEREENILKRLE 156 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677888999999999999999999884
No 106
>PRK13559 hypothetical protein; Provisional
Probab=82.79 E-value=2 Score=46.15 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEECCCCCCHH
Q 003718 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~--~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~e 202 (800)
...++.|||.||+.+-. ..+..|.|.+.....++...|.|.|||.||.++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 34588999999999821 123457776632333556789999999997664
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.77 E-value=8.8 Score=41.31 Aligned_cols=79 Identities=35% Similarity=0.476 Sum_probs=55.1
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhH------------HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHH-------H
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGEL------------QEER----ERCRSLEAQLKVMQQTIEELNKEQES-------L 775 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~e~----~~~k~l~~~~~~~~~~l~~~~k~~~~-------l 775 (800)
|+.-+.++..+..++++|+.+.|..| ++|. ++..+|+.+|.++...++.+.++++. +
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888888888888877764 3343 66677777776666666655555554 4
Q ss_pred HHHHHHHHhhHHHHHHHHhhhh
Q 003718 776 IDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 776 i~~f~eer~~~~~e~~~l~~kl 797 (800)
-+-|+|.|.+-+-|.+.++.+.
T Consensus 137 e~~~~e~~~~~e~e~~~i~e~~ 158 (239)
T COG1579 137 EKNLAEAEARLEEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888877754
No 108
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.64 E-value=5.6 Score=49.38 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=75.6
Q ss_pred cCCCCCcccccccchhhhhhh-------hhchHHHHHHHHhHHhHH----HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003718 707 VNYPEHFLSDCSLGANLGQLK-------QENHELKKRLEKKEGELQ----EERERCRSLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
++|=+-++.+. ++.||+|| +|.++++=|+...|..|. .+=++.+.+++.+++.++.|-.-.||-+-.
T Consensus 950 aegL~~tle~r--e~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeet 1027 (1243)
T KOG0971|consen 950 AEGLGLTLEDR--ETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEET 1027 (1243)
T ss_pred hhhhhhhHHhh--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666 77788886 467888888888887764 344888999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhc
Q 003718 776 IDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 776 i~~f~eer~~~~~e~~~l~~kl~ 798 (800)
.|+++-+.+.-++|...|+.+|+
T Consensus 1028 mdaLq~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 1028 MDALQADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhh
Confidence 99999999999999999999983
No 109
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.14 E-value=7 Score=43.17 Aligned_cols=76 Identities=30% Similarity=0.360 Sum_probs=56.3
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
|+.||+|..+++..|..+...+..-..+...|+++++++..++.++..+...+-.+..+-|..-..|...|+.+++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7777877777777777777766665666667777777777777777777777666666677777888888888764
No 110
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=80.63 E-value=1.5 Score=39.57 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.0
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQE 746 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (800)
+|..|.+||..||+||+|+|++||+
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999998875
No 111
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.30 E-value=7.5 Score=52.15 Aligned_cols=79 Identities=30% Similarity=0.427 Sum_probs=56.2
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHhhh
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKK 796 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l---i~~f~eer~~~~~e~~~l~~k 796 (800)
...+.+|.+...+|..|+..++++|..|+..+..++.+..++...|++++++.+-. +..-.|-+.+|+.|.+.||..
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777888888888888888888777777777777777766666665544 445566677777777777776
Q ss_pred hc
Q 003718 797 IK 798 (800)
Q Consensus 797 l~ 798 (800)
|+
T Consensus 1169 le 1170 (1930)
T KOG0161|consen 1169 LE 1170 (1930)
T ss_pred HH
Confidence 63
No 112
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.83 E-value=4.5 Score=44.99 Aligned_cols=72 Identities=25% Similarity=0.419 Sum_probs=47.0
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
|+..+++..++.++|..++.+++.-......|+.+++..+++|+.+.+ ||+.++.|+.|-.+..+.|..+++
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~----Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK----LISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH----HHhhhcchhhhHHHHHHHHHHHhc
Confidence 344444444444444444444444344555666666777777776655 999999999999988888877654
No 113
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.72 E-value=4.8 Score=42.22 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=14.6
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQE 746 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (800)
.++.-+++|+++..++...++....+|+.
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444555555555555554444444444
No 114
>PRK11637 AmiB activator; Provisional
Probab=78.27 E-value=9.8 Score=43.33 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=33.4
Q ss_pred hhhhhhhchHHHHHHHHhHHhH---HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 003718 723 LGQLKQENHELKKRLEKKEGEL---QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~---~~e~----~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~ 795 (800)
|++++++..+++..|...+..+ +.++ .+...++.++.+++++|++++++.+.|-.-..+-+.+-++-++.|+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444333332 2222 33344444555555555555555555544444444444444444433
No 115
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=76.24 E-value=3.2 Score=47.09 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=49.5
Q ss_pred HHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhh-cCccccccCCcccCccccccc
Q 003718 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFK 230 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~Ls-fG~SsK~~~~~~IGrfG~GfK 230 (800)
..+|-.+|.||+-+-- +...|.|.+.. .+..-.|.|.|.|.|++.+++.+.+. |-.-.|. .....|--|+|+.
T Consensus 344 tQVldNii~NA~KYsP-~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA-RsR~~gGTGLGLa 417 (459)
T COG5002 344 TQVLDNIISNALKYSP-DGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA-RSRKMGGTGLGLA 417 (459)
T ss_pred HHHHHHHHHHHhhcCC-CCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh-hhhcCCCCchhHH
Confidence 4678888888888722 23445555533 34567899999999999999999875 4433332 2235677788875
No 116
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=75.05 E-value=4.1 Score=46.43 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=47.2
Q ss_pred cccCchhhhccccccccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHH
Q 003718 136 VRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (800)
Q Consensus 136 ~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~e 202 (800)
.-.++.-.+-+-|..--.+-..-|++.|=.... +|+.|+|.+... +..-++.|.|||.|+++.
T Consensus 394 ~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA--~AS~V~i~l~~~--~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 394 LDWRINETALDETQRVTLYRLCQELLNNICKHA--DASAVTIQLWQQ--DERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eccccCcccCCcceeEeHHHHHHHHHHHHHhcc--ccceEEEEEeeC--CcEEEEEEecCCcCCCCC
Confidence 334455555566667778888999999988762 688899888764 345799999999998764
No 117
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=73.93 E-value=19 Score=34.98 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=60.6
Q ss_pred hhhhhhchHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 003718 724 GQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~e~-~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl 797 (800)
.||++.+.-|+|-+.-+|..|+.=+ |.|--.++-+..-|+.+|...-..-.+|-+|.-|++.-..|-+.|+.-|
T Consensus 45 qqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 45 QQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3688888888888888888776555 9998888888888888888888888899999999999888877776544
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.81 E-value=14 Score=44.46 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=22.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 003718 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (800)
Q Consensus 750 ~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~ 795 (800)
+...|+.++++++++++++..+....--.+.++|+.-..+.+.|+.
T Consensus 231 ~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~ 276 (650)
T TIGR03185 231 EIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEA 276 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444555555555444444443
No 119
>PRK11637 AmiB activator; Provisional
Probab=72.24 E-value=23 Score=40.47 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 754 LEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 754 l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
|..++.+.+++|.++.+++..|-..+.
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555544444433333
No 120
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=71.44 E-value=20 Score=45.31 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCcccccccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHH
Q 003718 711 EHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQ 757 (800)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~ 757 (800)
..+-+|+ ..||.-|.=||..|||+|++.+..=--.|+|-|..|.+
T Consensus 127 sSs~ddy--RSVIDDLTve~kkLK~eLkrykq~g~~~L~~dKLFEik 171 (989)
T PF09421_consen 127 SSSADDY--RSVIDDLTVENKKLKEELKRYKQRGPAMLRKDKLFEIK 171 (989)
T ss_pred Cccchhh--hhhhhhHHHHHHHHHHHHHHhccCCchhccccceeEEE
Confidence 3455666 88999999999999999999987633333333333333
No 121
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.37 E-value=32 Score=34.63 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=17.7
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEE 747 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e 747 (800)
...+.+|.+|...+.+++...+..+...
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777766666665333
No 122
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=70.57 E-value=22 Score=38.55 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=51.0
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHH------------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERE------------RCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~------------~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
.+-++.|+.|+.++..++.+.+..++.|.. .++...++++.++++|+++.++..+.+....
T Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 141 DAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455888999999999999999999988883 3788888888888888888888777777776
No 123
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=70.21 E-value=23 Score=31.60 Aligned_cols=55 Identities=35% Similarity=0.500 Sum_probs=29.6
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li 776 (800)
.|.||.+|...|...-.+....+.+=+-+++.++.++.++.++++.+.++-+.|-
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666555555554444444445555555555555555555555444443
No 124
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=70.12 E-value=27 Score=35.13 Aligned_cols=46 Identities=41% Similarity=0.588 Sum_probs=21.5
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
+.++.+.+.++...+...++..+..++..+...++++.++...+++
T Consensus 97 l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 142 (191)
T PF04156_consen 97 LDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKEL 142 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444433333333333333333333
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.93 E-value=32 Score=37.20 Aligned_cols=75 Identities=24% Similarity=0.330 Sum_probs=50.6
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~ 795 (800)
+.+|..|...+++|+..++.+|..=+ ++...|.+++...++.+.++.+.-+.=+...-+++-..-++.+.|..
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999998874444 33444455555555556665555555555556666666677777776
Q ss_pred hh
Q 003718 796 KI 797 (800)
Q Consensus 796 kl 797 (800)
||
T Consensus 171 ~l 172 (239)
T COG1579 171 KL 172 (239)
T ss_pred hc
Confidence 65
No 126
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.93 E-value=44 Score=32.41 Aligned_cols=72 Identities=25% Similarity=0.339 Sum_probs=43.6
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l 793 (800)
-+..++++.....++....+....+|+ .....|.+++.+++.++.++..+-++....+.+.+..=..+++-|
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~l 103 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQL 103 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 355566666666666666666666666 455566667777777777777776666666664444433333333
No 127
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=69.91 E-value=37 Score=33.37 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=66.7
Q ss_pred ccccccchhhhhhhhhchHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003718 714 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE 791 (800)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~ 791 (800)
|-.| .| |..|+++-..-++-+.+--+.|..++ +-..-|+.++-..+++.|..-.|-++|-.|..|=-+-.-|=+|
T Consensus 23 iIFP--kT-I~~L~e~A~qh~~~Il~eye~mk~~~~~~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~ynq~qe 99 (125)
T PF13256_consen 23 IIFP--KT-IDTLKEQAEQHKEQILHEYEGMKKKVKVTSIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDYYNQIQE 99 (125)
T ss_pred hccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 55 89999999999999988888888777 5566678888899999999999999999999999888888888
Q ss_pred HHh
Q 003718 792 NLR 794 (800)
Q Consensus 792 ~l~ 794 (800)
||+
T Consensus 100 ~~k 102 (125)
T PF13256_consen 100 ELK 102 (125)
T ss_pred Hhc
Confidence 887
No 128
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.60 E-value=29 Score=38.81 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 767 ELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 767 ~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
.+.+|||+||+-+.---+.-..|...|..||.
T Consensus 171 ~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 171 TLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999999998888888888888888875
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.16 E-value=30 Score=35.46 Aligned_cols=60 Identities=23% Similarity=0.518 Sum_probs=37.0
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
-|..|+.++..|++++..++++|.... |-.-+|..++--++.++..+.+|+..||+-+=.
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666665552211 555566666667777777777777777765543
No 130
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.22 E-value=20 Score=43.25 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=18.0
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (800)
+..++.|+.||++|+-.|..++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888887777666553
No 131
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.11 E-value=53 Score=35.98 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=34.5
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHH-H-----------HHH--hhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQ-E-----------ERE--RCRSLEAQLKVMQQTIEELNKEQESLI 776 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----------e~~--~~k~l~~~~~~~~~~l~~~~k~~~~li 776 (800)
.|.+|++|...||.+|..+...|. + |.+ --|+-.++++.++++.++..|+-+.|-
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999987765541 1 111 112333455666666666666655554
No 132
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=67.86 E-value=24 Score=45.70 Aligned_cols=77 Identities=34% Similarity=0.469 Sum_probs=63.2
Q ss_pred hhhhhhhhchHHHHHHHHhHHh----------HHHHHH-------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 722 NLGQLKQENHELKKRLEKKEGE----------LQEERE-------RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~----------~~~e~~-------~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
.|.+|+++...|.++|...++. ++.+.. ....|.+++.++++++.++..+...++..|...|.
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 851 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRK 851 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999888876 233334 47888999999999999999999999999999998
Q ss_pred hHHHHHHHHhhhhc
Q 003718 785 RREREEENLRKKIK 798 (800)
Q Consensus 785 ~~~~e~~~l~~kl~ 798 (800)
+.+++.+.++..++
T Consensus 852 ~le~~~~~~~~~~~ 865 (1201)
T PF12128_consen 852 ELEEELKALEEQLE 865 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776553
No 133
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.27 E-value=30 Score=41.01 Aligned_cols=67 Identities=25% Similarity=0.352 Sum_probs=58.2
Q ss_pred hhhhhhhhc---hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003718 722 NLGQLKQEN---HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER 788 (800)
Q Consensus 722 ~~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~ 788 (800)
++|+|++-| .++.|-|.++..++.+-.+.+-+|..||-++++|+..+--|-|.|..++.+-.++.+|
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q 272 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ 272 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 488888877 4677888999999888889999999999999999999999999999998887777765
No 134
>PF15294 Leu_zip: Leucine zipper
Probab=67.22 E-value=32 Score=37.96 Aligned_cols=45 Identities=36% Similarity=0.500 Sum_probs=31.3
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~ 763 (800)
|..-|..|+.||..||+||+..|..--.=++-...|+.+|.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999998754444444445555544443
No 135
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=67.18 E-value=21 Score=31.99 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=23.6
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQ 745 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (800)
+..|..|+.||=.||=|+--+|+.|+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56799999999999999999999886
No 136
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=66.77 E-value=30 Score=43.74 Aligned_cols=55 Identities=36% Similarity=0.466 Sum_probs=40.2
Q ss_pred HHHHHhhhcHHHHH----HHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcc
Q 003718 745 QEERERCRSLEAQL----KVMQQTIEE-----LNKEQESLIDIFAEERDRREREEENLRKKIKI 799 (800)
Q Consensus 745 ~~e~~~~k~l~~~~----~~~~~~l~~-----~~k~~~~li~~f~eer~~~~~e~~~l~~kl~~ 799 (800)
++|-.-|+-|.+|. ..||++-|+ ..++-+++|+-..||..|+++||+..|.||+.
T Consensus 809 ~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~ 872 (1018)
T KOG2002|consen 809 AQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEK 872 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55557788777766 334433222 33566899999999999999999999999863
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.71 E-value=19 Score=36.91 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=39.1
Q ss_pred hhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 721 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
.-+..|+.+..+...+|..++..+..=..+++.|++++++.++-++.++-|-.+|==-|
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777778888888888888877777778999999999999999999999988875443
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.09 E-value=31 Score=41.66 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=12.1
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQ 745 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (800)
...|.+|+.|+..|+.+|..+-.++.
T Consensus 442 ~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 442 KRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444444443
No 139
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=66.09 E-value=7.1 Score=38.36 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=28.9
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM 761 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~ 761 (800)
.|..||.||.=|||.|-.++|.....+.--..|.+||+.+
T Consensus 86 TI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 86 TIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4788999999999999988887765554444555555443
No 140
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=65.79 E-value=20 Score=42.84 Aligned_cols=72 Identities=29% Similarity=0.461 Sum_probs=52.8
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL--------------KVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~--------------~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
++-.|++|+.|+.+|+.++.+.+......+++-+.++.+| ..++-.+..+.+|+.-|.+-+..-|.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4456999999999999999999888766665554333333 33344555677888888888888888
Q ss_pred hHHHHH
Q 003718 785 RREREE 790 (800)
Q Consensus 785 ~~~~e~ 790 (800)
..|+|-
T Consensus 191 ~ld~Et 196 (546)
T KOG0977|consen 191 QLDDET 196 (546)
T ss_pred HHHHHH
Confidence 888775
No 141
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.38 E-value=29 Score=44.18 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=57.3
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhH----HH---HH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---H
Q 003718 720 GANLGQLKQENHELKKRLEKKEGEL----QE---ER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE---R 788 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~---e~-~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~---~ 788 (800)
+..|.++|.+-..|++.+...++++ +. |+ +|.+.|+.+++.+|-+++.|..|++-+.....++..+++ -
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3357777777777777776666654 22 22 889999999999999999999999988887766655553 4
Q ss_pred HHHHHhhhhc
Q 003718 789 EEENLRKKIK 798 (800)
Q Consensus 789 e~~~l~~kl~ 798 (800)
+.-.||+|+.
T Consensus 444 ~i~~l~k~i~ 453 (1074)
T KOG0250|consen 444 EILQLRKKIE 453 (1074)
T ss_pred HHHHHHHHHH
Confidence 4556777654
No 142
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.04 E-value=32 Score=30.97 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
+||.+|+.+.++|+.+.|.+..|.+.|.+
T Consensus 32 Eknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 32 EKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998888764
No 143
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=64.91 E-value=37 Score=35.42 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 753 SLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 753 ~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
.+..++..++++|..+..|.+.|-.-|..
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777666653
No 144
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=64.79 E-value=20 Score=35.02 Aligned_cols=76 Identities=28% Similarity=0.347 Sum_probs=41.4
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELN--KEQESLIDIFAEERDRREREE 790 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~k~l~~~~~~~~~~l~~~~--k~~~~li~~f~eer~~~~~e~ 790 (800)
...+..|..+|.+|-++...++..|..-+ +..+.|..++.+.++++..+. --..+|...|...=..-|.|-
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeS 112 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEES 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 34466777788888877777776664444 555555555555555444432 123445556666666666666
Q ss_pred HHHhh
Q 003718 791 ENLRK 795 (800)
Q Consensus 791 ~~l~~ 795 (800)
+.|..
T Consensus 113 e~lae 117 (150)
T PF07200_consen 113 EELAE 117 (150)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 66644
No 145
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.73 E-value=32 Score=42.57 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=41.1
Q ss_pred hhhhhhhchHHHHHHHHhHHhHH-HHH------------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQ-EER------------------ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~-~e~------------------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
|.-|+-||..|+.||.-+...|+ +|+ -.|.+|+.||+|..+.+|.+...+|.|+.+
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~ 463 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKV 463 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHH
Confidence 77899999999999988887763 344 346678888877777777776666655444
No 146
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=64.28 E-value=35 Score=37.93 Aligned_cols=76 Identities=26% Similarity=0.404 Sum_probs=42.5
Q ss_pred hhhhhhchHHHHHHHHhHHhH-HHHH-----HhhhcHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhHHH
Q 003718 724 GQLKQENHELKKRLEKKEGEL-QEER-----ERCRSLEAQLKVMQQ---------TIEELNKEQESLIDIFAEERDRRER 788 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~-~~e~-----~~~k~l~~~~~~~~~---------~l~~~~k~~~~li~~f~eer~~~~~ 788 (800)
.+|.+||..|+++|+.+-+.. .+|. -+-+.|+.||-+|.= ..+.+.++++.|++=.. .=...-+
T Consensus 131 ~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~-~~~~~~~ 209 (309)
T PF09728_consen 131 IKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAA-QVQTLKE 209 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 348899999999999776653 2222 455666666644432 11122222221111111 3334556
Q ss_pred HHHHHhhhhccC
Q 003718 789 EEENLRKKIKIY 800 (800)
Q Consensus 789 e~~~l~~kl~~~ 800 (800)
.|..||..|.+|
T Consensus 210 ~E~~Lr~QL~~Y 221 (309)
T PF09728_consen 210 TEKELREQLNLY 221 (309)
T ss_pred HHHHHHHHHHHH
Confidence 788899998887
No 147
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=63.99 E-value=8.1 Score=46.73 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhh
Q 003718 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS 209 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~Ls 209 (800)
.-.-.....||.||+-........|.|... .++...++.|.|||.|+++.-+.+.+.
T Consensus 635 ~~l~qv~~NLi~Naik~~~~e~~~i~I~~~--r~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 635 TQLGQVFQNLIANAIKFGGPENPDIEISAE--RQEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred HHHHHHHHHHHhhheecCCCCCCceEEeee--ccCCceEEEecCCCCCcCHHHHHHHHH
Confidence 334456788999999984433455666543 335678999999999999999998654
No 148
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=63.46 E-value=16 Score=42.74 Aligned_cols=51 Identities=33% Similarity=0.481 Sum_probs=31.2
Q ss_pred HHHHHHhhhcHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 003718 744 LQEERERCRSLEAQLKV-------MQQTIEELNKEQESLIDIFAEERDRREREEENLR 794 (800)
Q Consensus 744 ~~~e~~~~k~l~~~~~~-------~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~ 794 (800)
+.+||+-+.+||.||.+ +|++|..-.|.-.-|-+++--|-+||+|+|..|.
T Consensus 537 ~lrerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~sk~reqaeqs~~ 594 (641)
T KOG3915|consen 537 FLRERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALEFESKRREQAEQSLK 594 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhccc
Confidence 35666667777777633 3334444444444555556666689999988764
No 149
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=63.31 E-value=1.3e+02 Score=30.92 Aligned_cols=21 Identities=33% Similarity=0.077 Sum_probs=9.7
Q ss_pred CCCCCCCCCcccCCCCCccccc
Q 003718 696 PFMPSQSKGSEVNYPEHFLSDC 717 (800)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~ 717 (800)
.++.+.++..++.+-.. +.||
T Consensus 23 ~~~~~~~~~s~LR~~ta-llDp 43 (157)
T PF15236_consen 23 TSMQSSSKTSFLRGMTA-LLDP 43 (157)
T ss_pred cccccccccCccccccc-cCCH
Confidence 34444444455544433 4444
No 150
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.88 E-value=64 Score=32.52 Aligned_cols=66 Identities=24% Similarity=0.446 Sum_probs=49.7
Q ss_pred hhhhhhhchHHHHHHHHhHHhH--------------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGEL--------------QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER 788 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~--------------~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~ 788 (800)
..||+-||..|.++|..+..+| ..-++|...+.+++..++++|....++...+-+-+......|+.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999888886 33337777788888888888888887777777666655544443
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.68 E-value=21 Score=35.71 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=9.9
Q ss_pred hhhhhhhchHHHHHHHHhHHh
Q 003718 723 LGQLKQENHELKKRLEKKEGE 743 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~ 743 (800)
|.+|++|..+|+..+..++.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 152
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=61.98 E-value=41 Score=29.90 Aligned_cols=54 Identities=28% Similarity=0.400 Sum_probs=35.1
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~ 785 (800)
.|..|-+||..|||-|..- |-.+-+|++++..=-++-.++.+.+..-|.|.|..
T Consensus 7 ~l~~LL~EN~~LKealrQ~----------N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~l 60 (68)
T PF11577_consen 7 QLQELLQENQDLKEALRQN----------NQAMKERFEELLAWQEKQKEEREFLERKFQEAREL 60 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778889999999887654 34444555555554555556666666666666654
No 153
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.94 E-value=33 Score=35.11 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=32.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 748 RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 748 ~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
..+++.|+.+++.+++++.....+=++||.|+-.-|.
T Consensus 117 ~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 117 QKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999865554
No 154
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=61.63 E-value=62 Score=34.94 Aligned_cols=63 Identities=30% Similarity=0.431 Sum_probs=47.0
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
.+..++.|+.+++..+..++.++..=+.++..|+.++.+++.++....+.-.+.|.-+-.|..
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~ 272 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELA 272 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 467788888888888888888887777888888888888888777666665555554444443
No 155
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.15 E-value=29 Score=42.95 Aligned_cols=73 Identities=34% Similarity=0.438 Sum_probs=50.3
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHH-------HHHhhh-cHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQE-------ERERCR-SLEAQL---KVMQQTIEELNKEQESLIDIFAEERDRRE 787 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~~~~k-~l~~~~---~~~~~~l~~~~k~~~~li~~f~eer~~~~ 787 (800)
|..+|..+|+||..|.+-++.++.+|.. |..+.| .+++-| +..|-+||++.||+-.|--.+ ..||
T Consensus 460 llk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itl----rQrD 535 (861)
T PF15254_consen 460 LLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITL----RQRD 535 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHH----HHHH
Confidence 4457888889998888888888887632 223332 233333 444559999999998775544 5789
Q ss_pred HHHHHHhh
Q 003718 788 REEENLRK 795 (800)
Q Consensus 788 ~e~~~l~~ 795 (800)
.|.+.||.
T Consensus 536 aEi~RL~e 543 (861)
T PF15254_consen 536 AEIERLRE 543 (861)
T ss_pred HHHHHHHH
Confidence 99998885
No 156
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.12 E-value=50 Score=36.87 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=39.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHhhhhc
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD-------RREREEENLRKKIK 798 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~-------~~~~e~~~l~~kl~ 798 (800)
..+|+.|.....++...+.+...++.|++++...|++.+++...+..-.+|-+. --..|...|+.++.
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 444555555555555555555556666666666666655555555444444433 33568888887764
No 157
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.81 E-value=37 Score=42.27 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=58.6
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCR-SLEAQLKVMQQTIEELNKEQESLID----------IFAEERDRREREEE 791 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k-~l~~~~~~~~~~l~~~~k~~~~li~----------~f~eer~~~~~e~~ 791 (800)
++||+.=-.|-..||...--...+|.+|-| .|+.+|.++.++|.++.-|..+|.+ -+.|++.+-+.|-+
T Consensus 58 ~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~ 137 (769)
T PF05911_consen 58 MRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIE 137 (769)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666666555555565555555578889988 9999999999999999998887666 45668888888888
Q ss_pred HHhhhhc
Q 003718 792 NLRKKIK 798 (800)
Q Consensus 792 ~l~~kl~ 798 (800)
.|..+|+
T Consensus 138 ~l~~~l~ 144 (769)
T PF05911_consen 138 DLMARLE 144 (769)
T ss_pred HHHHHHH
Confidence 8888775
No 158
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.09 E-value=35 Score=41.15 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=20.8
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 003718 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (800)
Q Consensus 750 ~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~ 795 (800)
+...++.++..++.+++++.++.+.|-+.|..+-..+.+|.+.|+.
T Consensus 224 ~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ 269 (650)
T TIGR03185 224 KYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLER 269 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433
No 159
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.69 E-value=55 Score=38.69 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=30.3
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 003718 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 796 (800)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~k 796 (800)
++++...+++++..+..+..++.++.+++.+++...+..+.-+..|.+-+.+-.+|=+||..+
T Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 59 RAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555554444444444444444455555555555544
No 160
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=59.65 E-value=82 Score=28.09 Aligned_cols=66 Identities=29% Similarity=0.388 Sum_probs=46.4
Q ss_pred HHHHHHHhHHh---HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 733 LKKRLEKKEGE---LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 733 ~~~~~~~~~~~---~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
|...|..+.+- |+.|-++.-.-+-++.+..++|..-+++.+..|+-+....+.-+++.++|+.+|+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444 3555566655566667777788888888888888888888888888888888775
No 161
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=59.64 E-value=16 Score=44.61 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=45.6
Q ss_pred hhhhhhhhhchHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 721 ANLGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
..|..|+.||..|++||..+|+.-.... .-......++.+++.+++.++|.-.-|.++|+.--.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~ 634 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQ 634 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999988876532221 222344556889999999999999999999976433
No 162
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.24 E-value=33 Score=40.89 Aligned_cols=59 Identities=24% Similarity=0.417 Sum_probs=42.4
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
..+|.++..+|.+++...++.+.....-...+.++++++.++|+++.++|..+.+...+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~ 408 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQG 408 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666665554444446777888889999999999999888776664
No 163
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.90 E-value=27 Score=36.48 Aligned_cols=49 Identities=33% Similarity=0.432 Sum_probs=33.9
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k 770 (800)
.|+.||+|..++|.+....+..|..=.-.|+.|.+=|+.|++..+++.+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k 76 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6999999999999998888887755445555555555555544444443
No 164
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=58.36 E-value=42 Score=34.44 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=49.3
Q ss_pred hchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHhhhh
Q 003718 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE-NLRKKI 797 (800)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~-~l~~kl 797 (800)
+....+..+.|+...-...-+|...++.++++++++.+.+.++=+.+-+.+-.|..|+++|.. .++.-|
T Consensus 143 ~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l 212 (236)
T PF09325_consen 143 ELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSML 212 (236)
T ss_pred HHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333233347888899999999999999999999999999999999998864 444444
No 165
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.20 E-value=51 Score=42.13 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=52.9
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~ 785 (800)
-|++|++|...++++|..+++.+..+++-++.|.++++..+.+|..-+++-+.+-.-|.+-..+
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999988888888888888888888888777777777666655554
No 166
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.07 E-value=45 Score=41.59 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=61.6
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl 797 (800)
-+++++-...+|.-+++.+|-++|.=.+-..-++.++.+++-.||+++-+-+-|++.++--|+.--.--+.|++|-
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~ 175 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKN 175 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 4788888888899999999888888778888888999999999999999999999988877765444445555553
No 167
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=57.97 E-value=30 Score=38.01 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=49.0
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 782 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ee 782 (800)
.|..+++-|++....+++||...++....++.+.+.-.++|.+++.+++.+.++-..|-.+|..=
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~ 67 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNS 67 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC
Confidence 45677888888888888888888888777775544444555666667799999999999998743
No 168
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.91 E-value=72 Score=33.69 Aligned_cols=63 Identities=32% Similarity=0.520 Sum_probs=33.9
Q ss_pred hhhhhhhhchHHHHHHHHhHH-----h----------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 722 NLGQLKQENHELKKRLEKKEG-----E----------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~-----~----------~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
-|.+++.++..|+.++...-+ . +....+++..|..+++.++++++...++.+.+.+.....|.
T Consensus 28 ~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777776666544 1 12222555555555555555555555555555444444443
No 169
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.48 E-value=59 Score=36.41 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=28.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
.|||.+..+-+++++.|..+.--|..|..=+.|=++|-
T Consensus 248 ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 248 QRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777778888888888777777777777666665
No 170
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.14 E-value=47 Score=41.30 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=21.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 750 ~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
+.+.+++..++|++-|+++.+|=+.+|.-+.+
T Consensus 564 ~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 564 EDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555567777778888777777777765
No 171
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.97 E-value=65 Score=35.38 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=40.8
Q ss_pred hhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 003718 727 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl 797 (800)
++|..|..|--...|.+|..+|+ .|++|+.+++..-..|.-||+.+.+-|---|-..-|-++.|++-|
T Consensus 33 reEl~EFQegSrE~EaelesqL~---q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl 100 (333)
T KOG1853|consen 33 REELNEFQEGSREIEAELESQLD---QLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL 100 (333)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333333333332 234444445544555667899999999888888888888887654
No 172
>PF14282 FlxA: FlxA-like protein
Probab=56.93 E-value=30 Score=32.63 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=40.7
Q ss_pred hhhhhhhhchHHHHHHHHhHHh--H--HHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGE--L--QEERERCRSLEAQLKVMQQTIEELNKEQ 772 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~--~--~~e~~~~k~l~~~~~~~~~~l~~~~k~~ 772 (800)
.|++|++....|.+.|..+..+ | ..-..+.+.|..|++.++.||-.+..++
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999988873 3 2334788889999999999888776554
No 173
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=56.39 E-value=20 Score=44.56 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcchhhhhcCCceeEEEEEEccCCCceeEEEEECCCCCCHHhH
Q 003718 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM 204 (800)
Q Consensus 153 pF~AIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL 204 (800)
.+..+-|+++||.| .+.++..-.|.+..++ ....|.|.+||.|+.-+..
T Consensus 54 l~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeec
Confidence 44678999999999 6666655455554443 4678999999999976543
No 174
>PRK10780 periplasmic chaperone; Provisional
Probab=56.15 E-value=77 Score=31.73 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=37.3
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhh---h-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHhh
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERC---R-SL-EAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRK 795 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---k-~l-~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~-~~l~~ 795 (800)
+-++|+.+.......|++++.+++.+.++- . .| +.+.++.+++|....++.......|.++-.+|.+|+ ..+..
T Consensus 44 ~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~ 123 (165)
T PRK10780 44 VSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILT 123 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665544221 1 11 112233344444444444445555666655555444 44444
Q ss_pred hh
Q 003718 796 KI 797 (800)
Q Consensus 796 kl 797 (800)
|+
T Consensus 124 ki 125 (165)
T PRK10780 124 RI 125 (165)
T ss_pred HH
Confidence 43
No 175
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=56.11 E-value=44 Score=34.91 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=35.5
Q ss_pred hhhhhhchHHHHHHHHhHHhHHHHHHhhh--------cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHH
Q 003718 724 GQLKQENHELKKRLEKKEGELQEERERCR--------SLEAQLKVMQQTIEEL-NKEQESLIDIFAEERDRRE 787 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~k--------~l~~~~~~~~~~l~~~-~k~~~~li~~f~eer~~~~ 787 (800)
|...+|.......|.|.+.++.+=.-|.+ .+.+.++++..+..++ .-+++++-+++-|||.|.-
T Consensus 105 K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc 177 (219)
T PF08397_consen 105 KDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYC 177 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555433222222 3444555555533333 3578899999999999975
No 176
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.05 E-value=34 Score=40.29 Aligned_cols=18 Identities=50% Similarity=0.532 Sum_probs=9.4
Q ss_pred hhhhchHHHHHHHHhHHh
Q 003718 726 LKQENHELKKRLEKKEGE 743 (800)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~ 743 (800)
|--+..+++.+|..++.+
T Consensus 64 lva~~k~~r~~~~~l~~~ 81 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISE 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555666655554
No 177
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.89 E-value=47 Score=35.30 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=15.7
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK 759 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~ 759 (800)
+.++.+|-.+|.+++..++.++..-.-.++.|+.++.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444333333333333333
No 178
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=55.80 E-value=83 Score=31.11 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=34.6
Q ss_pred hhhhhhchHHHHHHHHhHHh---HHHHHHhhhcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhH
Q 003718 724 GQLKQENHELKKRLEKKEGE---LQEERERCRSLEAQLKVMQQTI-----EELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~---~~~e~~~~k~l~~~~~~~~~~l-----~~~~k~~~~li~~f~eer~~~ 786 (800)
..|.+.+..|+.....+.+. ....++...+...+|+....+| .++.+||+-|.-+|+..=..+
T Consensus 30 ~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~ 100 (136)
T PF04871_consen 30 SSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKR 100 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHH
Confidence 44455555444443333332 2233444444445555444444 468999999999999654333
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=55.76 E-value=81 Score=35.10 Aligned_cols=44 Identities=39% Similarity=0.607 Sum_probs=19.7
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~ 773 (800)
|++|++|..+|.+.|.++|.+ +..|..++++++.++++++++.+
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e-------~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKE-------REELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444332 33444455555555444444333
No 180
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=55.75 E-value=38 Score=39.94 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHHHHhhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 003718 745 QEERERCRSLEAQL----KVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 745 ~~e~~~~k~l~~~~----~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl 797 (800)
+..++..+.+..+| +-.+-+|-+++++=+.+.++=.+|-.+.+.|-|.|.++|
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el 542 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKEL 542 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444333 445556777888888888888889999999999988876
No 181
>PHA02675 ORF104 fusion protein; Provisional
Probab=55.46 E-value=43 Score=31.04 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=37.5
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~ 773 (800)
.+|++||-.++...+.=-+.|+.+.++|.-+|+-+|++.+---
T Consensus 33 esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 33 ESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988888889999999999999999999877543
No 182
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.36 E-value=79 Score=33.40 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=16.0
Q ss_pred hhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003718 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~ 763 (800)
+++..+..|++++.++.+.+..++++...+.+.++..+.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333334433333
No 183
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=55.22 E-value=37 Score=30.91 Aligned_cols=41 Identities=39% Similarity=0.460 Sum_probs=22.3
Q ss_pred hhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003718 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k 770 (800)
|-++|.+|+..|..++++ +++.+.|.+.|..-=.+.-++||
T Consensus 3 Li~qNk~L~~kL~~K~eE----I~rLn~lv~sLR~KLiKYt~Lnk 43 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEE----IDRLNILVGSLRGKLIKYTELNK 43 (76)
T ss_dssp ---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999998887765 34444444444433333334433
No 184
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=55.19 E-value=22 Score=32.90 Aligned_cols=52 Identities=29% Similarity=0.438 Sum_probs=34.4
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQES 774 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~k~l~~~~~~~~~~l~~~~k~~~~ 774 (800)
|..|.+.....+.||..++-.|..+- +.+++|+.++..+..+|+...|+...
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 66777888888899999888874433 56666666665555555544444433
No 185
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.77 E-value=1.1e+02 Score=27.22 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=14.6
Q ss_pred hhhhhchHHHHHHHHhHHhH
Q 003718 725 QLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~ 744 (800)
.|..++.+|++||..++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~ 21 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKN 21 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 36677888888887776664
No 186
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.60 E-value=1.1e+02 Score=29.90 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=43.9
Q ss_pred hhhhhchHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 003718 725 QLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR 794 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~e~----~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~ 794 (800)
+.++++.+.+|-|......+..+. .....|+++++++++++..+....-+|-.-+..+...-..|.+.++
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655555554444443333 5566778888888888777766666666666666666666655554
No 187
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.53 E-value=61 Score=37.88 Aligned_cols=75 Identities=40% Similarity=0.405 Sum_probs=52.3
Q ss_pred hhhhhhchHHHHHHHHhHHhH-----------------HHHH----HhhhcHHHHHHHHH-HHHHHHHHHHH-------H
Q 003718 724 GQLKQENHELKKRLEKKEGEL-----------------QEER----ERCRSLEAQLKVMQ-QTIEELNKEQE-------S 774 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~-----------------~~e~----~~~k~l~~~~~~~~-~~l~~~~k~~~-------~ 774 (800)
..||+||-.|--|...+||-. ++|+ ++-++|+.+..++. |||++-|-|-. +
T Consensus 246 SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 246 SRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKS 325 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888887777653 2222 66667766655544 47777766654 5
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 775 LIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 775 li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
|+|-++||+-|-.++-|.||..|.
T Consensus 326 l~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 326 LADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHH
Confidence 678899999888888887776554
No 188
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=54.49 E-value=35 Score=30.34 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=37.1
Q ss_pred hhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003718 724 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~ 771 (800)
..|++-|..+|+|...+..=-..-++....|..++++|..-++.+..|
T Consensus 20 ealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 20 EALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357889999999998776655555577788888999998888877665
No 189
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.39 E-value=89 Score=31.32 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=28.4
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
||.-+.+..+|+.++..+|.+|+-=....-.+..+.+++++-++++
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L 57 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETL 57 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5666778889999999999887433333334444444444444443
No 190
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=53.20 E-value=1e+02 Score=31.96 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=15.4
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERE 749 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 749 (800)
++.-+.|+..+..||..+|+.|.++.+
T Consensus 73 ~~~~~~el~~~E~rl~~rE~~L~~~~~ 99 (201)
T PF12072_consen 73 LKERRKELQRLEKRLQQREEQLDRRLE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666655443
No 191
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.13 E-value=50 Score=40.70 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=36.0
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHH
Q 003718 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL-------NKEQESLIDIFAEERDRREREEENL 793 (800)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~-------~k~~~~li~~f~eer~~~~~e~~~l 793 (800)
+|+|...+|.++.+=+...|..++|+.++++++.++ .++.|.|..+++-=++.-.+=|++|
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666665555555666666666666655433 3456767666665555555555544
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.13 E-value=57 Score=37.05 Aligned_cols=62 Identities=29% Similarity=0.332 Sum_probs=32.3
Q ss_pred hhhhhhhchHHHHHHHHhHH--------------hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 723 LGQLKQENHELKKRLEKKEG--------------ELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~--------------~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
.+||+-.|..|++.|....+ -+.+-.+.|.+|+-||++++++..|...|-..|---++|++.
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 34555555555555443332 233333666666666666666665555554445444444443
No 193
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=52.75 E-value=44 Score=36.07 Aligned_cols=59 Identities=29% Similarity=0.478 Sum_probs=42.1
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
.+=|..|+..|..|..+|..++..+..++ .....|+.++.+++.++.....|-..|.|+
T Consensus 229 ~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~ 291 (312)
T PF00038_consen 229 QAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDV 291 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777778888888888887777666 455677777777777777777776666664
No 194
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.72 E-value=56 Score=40.63 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=18.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 751 CRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 751 ~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
.+.+++-.++|++-|+++.+|-+.+|.-+.+
T Consensus 560 ~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 560 RNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444466666667777666666666554
No 195
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=52.17 E-value=20 Score=40.30 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=44.5
Q ss_pred cHHHHHHHHhhcchhhhhcCCc-eeEEEEEEcc------CCC----ceeEEEEECCCCCCHHhHHHhhhcCccccccCCc
Q 003718 152 WALGAFAELLDNSLDEVCNGAT-YSNIDMLINR------KDG----SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAAN 220 (800)
Q Consensus 152 wpF~AIAELIDNAiDA~~~gAt-~V~Idi~~~~------~~g----~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~ 220 (800)
....|+-.||.||..|....+. .=.|.+.... .+. .--|.|.|||.|+.++-....|..--|.|.
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~---- 316 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE---- 316 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC----
Confidence 3558999999999999653221 1122221100 011 234889999999999888887754444443
Q ss_pred ccCccccccccc
Q 003718 221 TIGQYGNGFKTS 232 (800)
Q Consensus 221 ~IGrfG~GfKsA 232 (800)
|--|+|+..+
T Consensus 317 --~GsGLGLala 326 (363)
T COG3852 317 --GGTGLGLALA 326 (363)
T ss_pred --CCccccHHHH
Confidence 2236776533
No 196
>PF14182 YgaB: YgaB-like protein
Probab=51.96 E-value=71 Score=29.34 Aligned_cols=47 Identities=28% Similarity=0.567 Sum_probs=31.7
Q ss_pred HHHHHHhHHh--HHHHHHhhhcHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 003718 734 KKRLEKKEGE--LQEERERCRSLEAQLKVMQQ---------TIEELNKEQESLIDIFA 780 (800)
Q Consensus 734 ~~~~~~~~~~--~~~e~~~~k~l~~~~~~~~~---------~l~~~~k~~~~li~~f~ 780 (800)
.|-|+-|++= ||.|+|+|...+.+|.++++ .+-.+.++-..+-++|.
T Consensus 7 ~eQm~tMD~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 7 SEQMKTMDKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665 59999999999988866554 34445555555555553
No 197
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=51.22 E-value=1.4e+02 Score=30.01 Aligned_cols=70 Identities=26% Similarity=0.372 Sum_probs=44.8
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 792 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~ 792 (800)
|.-|+.+.+.+-..|..++.+|..=+..+..|+..++..|.++.++..-+.++.+.+.+-=...-|..+.
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~ 123 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555566655444455677888899999988888888877777766533333333333
No 198
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=50.28 E-value=25 Score=38.41 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=18.6
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQE 746 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (800)
.+.+|++||.+||+++..+...++.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999888777554443
No 199
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.24 E-value=39 Score=30.54 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=41.0
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHH-----HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQ-----EERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li 776 (800)
.|..||+.|.+|...++-.+..+.+.+. .-..+++.|+..|+.+.++||.-...-+.|-
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566888888888887777776655541 1236788899999988888876554444443
No 200
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=50.23 E-value=80 Score=39.66 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=8.9
Q ss_pred eEEEEECCCCCCHHhHHHhh
Q 003718 189 MLLIEDNGGGMNPDKMRHCM 208 (800)
Q Consensus 189 ~L~I~DNG~GM~~eeL~~~L 208 (800)
.+.+--||.| ...|..++
T Consensus 26 ~~i~G~NGsG--KS~ildAi 43 (1164)
T TIGR02169 26 TVISGPNGSG--KSNIGDAI 43 (1164)
T ss_pred EEEECCCCCC--HHHHHHHH
Confidence 4455566666 33444443
No 201
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=50.11 E-value=60 Score=35.41 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=35.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~ 795 (800)
.+-+||..+--+-+++.||+.|..+ .+++.++.+|.||+++|.. +...-.+|...||.
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~---~e~~~r~~~leken~~lr~----~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKE---DEMAHRVAELEKENEALRT----QVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445666666666777777777666 5556666777777766542 33344445555543
No 202
>PRK12705 hypothetical protein; Provisional
Probab=49.74 E-value=54 Score=39.02 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=21.7
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI 765 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l 765 (800)
+++.++|......||.++|+.|.+..+.....+.+|+..+++|
T Consensus 72 ~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l 114 (508)
T PRK12705 72 ARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKAL 114 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666544444444444443333333
No 203
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=49.65 E-value=21 Score=41.97 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=40.0
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEELNKEQES 774 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~k~l~~~~~~~~~~l~~~~k~~~~ 774 (800)
-+.||.|+..||++|.+.+++.+... ..-+.|.+.|.+.|++||.|..|.+.
T Consensus 368 ek~lKeeI~~lk~~l~~~~~~~~~~~~~~~~~~~~e~i~~kE~eLe~L~~elDd 421 (492)
T PF06273_consen 368 EKFLKEEINALKERLEEEEASSEKSKGSGEEESLREEISQKEKELEKLTRELDD 421 (492)
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 47789999999999999988764443 22377888888888888888777654
No 204
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=49.54 E-value=78 Score=34.20 Aligned_cols=65 Identities=25% Similarity=0.339 Sum_probs=38.2
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhc----------------------HHHHHHHHH----H---HHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRS----------------------LEAQLKVMQ----Q---TIEELNKEQ 772 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~----------------------l~~~~~~~~----~---~l~~~~k~~ 772 (800)
.|-.|++...+-|..+..++.+--+|..|+|+ +..+|..+. - .||+ -|.
T Consensus 98 lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~~~~~~~ldsa~~dvn~k~~~lEe--~ek 175 (231)
T cd07643 98 LVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGKGDLQPQLDSAMQDVNDKYLLLEE--TEK 175 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHH--HHH
Confidence 35556666666667777777775455544442 222222221 1 2222 267
Q ss_pred HHHHHHHHHHHhhHHH
Q 003718 773 ESLIDIFAEERDRRER 788 (800)
Q Consensus 773 ~~li~~f~eer~~~~~ 788 (800)
.+|-+++-|||.|+--
T Consensus 176 ~alR~aLiEER~Rfc~ 191 (231)
T cd07643 176 KAVRNALIEERGRFCT 191 (231)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999999999854
No 205
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.25 E-value=39 Score=29.83 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=26.5
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k 770 (800)
..+|+.||..|++++...+++- ..|.++.+.|..++|.|..
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER-------~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREER-------AQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 5689999999998877665543 3344555555555555543
No 206
>PRK09039 hypothetical protein; Validated
Probab=49.10 E-value=87 Score=35.25 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=47.1
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
|..+++|..+|..+|..+-+.|.-|+.++..|+.++.+++.+++.+.++.+.|-..+++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~ 106 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666777777777777777778888999999999999999999888888888877764
No 207
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=49.09 E-value=84 Score=30.99 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=26.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
|.-+.|..+..++.++|+.-.++|+..|+.|.
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777778888899999999999998885
No 208
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=48.85 E-value=25 Score=41.56 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=31.1
Q ss_pred HHHHHhhcchhhhhc---CCceeEEEEEEccCCCceeEEEEECCCCCCHH
Q 003718 156 AFAELLDNSLDEVCN---GATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (800)
Q Consensus 156 AIAELIDNAiDA~~~---gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~e 202 (800)
-|-=||.||+-.--. +.-.|.|.+... +..-.|.|.|||.|+.++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~~--d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEKE--DADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEEe--CCeEEEEEecCCCCcCCC
Confidence 466789999987211 123355555443 456889999999999997
No 209
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.83 E-value=84 Score=33.82 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 771 EQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 771 ~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
+-++.|.-+.+++.+++.|.+.|+.+|.
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999999988764
No 210
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=48.59 E-value=1.5e+02 Score=33.48 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003718 762 QQTIEELNKEQESLI 776 (800)
Q Consensus 762 ~~~l~~~~k~~~~li 776 (800)
=++|..++||.+.|+
T Consensus 83 lKkl~~l~keKe~L~ 97 (310)
T PF09755_consen 83 LKKLQQLKKEKETLA 97 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777775
No 211
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.33 E-value=30 Score=43.78 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=11.1
Q ss_pred HhhhcHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~ 768 (800)
+|.+.++++-++.|++|+.|
T Consensus 411 Ekl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 411 EKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554
No 212
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=48.15 E-value=42 Score=36.15 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=43.4
Q ss_pred ccccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 003718 716 DCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 769 (800)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~ 769 (800)
++.+.++|..+.++...+.+.|.+.|..|+.|.+.+.+|.+-.+-++.+.+.+.
T Consensus 17 ~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~ 70 (243)
T PF07160_consen 17 DPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQ 70 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777899999999999999999999999998777777766666666655553
No 213
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=47.78 E-value=44 Score=32.86 Aligned_cols=14 Identities=43% Similarity=0.639 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhc
Q 003718 785 RREREEENLRKKIK 798 (800)
Q Consensus 785 ~~~~e~~~l~~kl~ 798 (800)
.-..|||.|+.+|+
T Consensus 104 ~l~~eEe~L~~~le 117 (141)
T PF13874_consen 104 ALSPEEEELRKRLE 117 (141)
T ss_dssp --------------
T ss_pred CCCHHHHHHHHHHH
Confidence 35689999999986
No 214
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.77 E-value=16 Score=31.32 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=23.2
Q ss_pred cccchhhhhhhhhchHHHHHHHHhHHhHHH
Q 003718 717 CSLGANLGQLKQENHELKKRLEKKEGELQE 746 (800)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (800)
++|++.|..+|.||.+|++.+.+++++++.
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888887743
No 215
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=47.45 E-value=64 Score=34.90 Aligned_cols=16 Identities=50% Similarity=0.621 Sum_probs=6.9
Q ss_pred hhchHHHHHHHHhHHh
Q 003718 728 QENHELKKRLEKKEGE 743 (800)
Q Consensus 728 ~~~~~~~~~~~~~~~~ 743 (800)
+||.+|.++|..+|++
T Consensus 149 ~EkeeL~~eleele~e 164 (290)
T COG4026 149 KEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 216
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=47.41 E-value=99 Score=38.18 Aligned_cols=74 Identities=30% Similarity=0.448 Sum_probs=51.7
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhH-HHHHHhhhcHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGEL-QEERERCRSLEAQL--------------------KVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~k~l~~~~--------------------~~~~~~l~~~~k~~~~li~~ 778 (800)
-+.|.+++++...|.+.|.++|..| +.|+.|.-.+++++ +++-|.+-++.|.=.+
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa---- 420 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQA---- 420 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH----
Confidence 5679999999999999999999885 55665555555443 3444455555544333
Q ss_pred HHHHHhhHHHHHHHHhhhh
Q 003718 779 FAEERDRREREEENLRKKI 797 (800)
Q Consensus 779 f~eer~~~~~e~~~l~~kl 797 (800)
.--|||.-..|-++||+-|
T Consensus 421 ~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 421 LTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3468888888888887754
No 217
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.31 E-value=99 Score=34.89 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=38.7
Q ss_pred hhhhhhhhchHHHHHHHHhH-----------------HhH----HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKE-----------------GEL----QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~-----------------~~~----~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
...||+++.+.||..+.... .+| ..=++.|+.|.+++++++++|+|+..+-..|-.-++
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 35666666666666665444 111 222378888888888888888888777666665444
Q ss_pred H
Q 003718 781 E 781 (800)
Q Consensus 781 e 781 (800)
.
T Consensus 111 ~ 111 (319)
T PF09789_consen 111 R 111 (319)
T ss_pred h
Confidence 3
No 218
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=47.11 E-value=94 Score=39.04 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.1
Q ss_pred hhhhhhhhchHHHHHHHHhHHh
Q 003718 722 NLGQLKQENHELKKRLEKKEGE 743 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~ 743 (800)
.|.+|.+|+.||.+||+..+..
T Consensus 671 q~eel~Ke~kElq~rL~~q~Kk 692 (988)
T KOG2072|consen 671 QIEELEKERKELQSRLQYQEKK 692 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999876654
No 219
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.91 E-value=88 Score=42.75 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 003718 759 KVMQQTIEELNKEQESLIDIFAEERDRREREEENLR 794 (800)
Q Consensus 759 ~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~ 794 (800)
..+++++.++-....-|.+-+.+||..|...|...+
T Consensus 1093 ~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~ 1128 (1930)
T KOG0161|consen 1093 AQLQKQIKELEARIKELEEELEAERASRAKAERQRR 1128 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555444433
No 220
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.79 E-value=97 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=12.0
Q ss_pred cchhhhhhhhhchHHHHHHHHhHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEG 742 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~ 742 (800)
++.+|+.|.++-.++.++....+.
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~ 541 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEA 541 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566665555555444444333
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.64 E-value=97 Score=36.49 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=32.7
Q ss_pred hhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 727 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
.+....|..++++.+.+++.|+|-+++|.+-+..-..||++++.-+...+....|
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~ 435 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDE 435 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666667776677777777766666666666665554444444333
No 222
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.62 E-value=73 Score=41.72 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=34.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 751 CRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 751 ~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
+..|.+++++++.+|+.+..+.+.+..-+.+-|.+++.+++.++.++.
T Consensus 897 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1311)
T TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVN 944 (1311)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444446666677777777788888888888888888888887763
No 223
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=46.48 E-value=1.5e+02 Score=33.16 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 003718 753 SLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 753 ~l~~~~~~~~~~l~~~~k~~~ 773 (800)
.|.++|++++++-+++.+|.+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 224
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=46.47 E-value=75 Score=41.30 Aligned_cols=59 Identities=15% Similarity=0.376 Sum_probs=45.4
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
|+.+-.++.+.+.+.++++..++..+..|| +....|..+++.++++|....+.+..+++
T Consensus 734 i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~e 799 (1201)
T PF12128_consen 734 IEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIE 799 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455566677777888888888888888888 57788888888888888887777666554
No 225
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.46 E-value=90 Score=34.68 Aligned_cols=51 Identities=33% Similarity=0.376 Sum_probs=22.8
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~ 773 (800)
|.+++.+..++|..|..+++.++.=.++...++++.++++.+|+++.+..+
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444344444444444444444444444433
No 226
>PRK02224 chromosome segregation protein; Provisional
Probab=46.38 E-value=50 Score=40.83 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=6.5
Q ss_pred hhchHHHHHHHHhHHhH
Q 003718 728 QENHELKKRLEKKEGEL 744 (800)
Q Consensus 728 ~~~~~~~~~~~~~~~~~ 744 (800)
++...+.+++...+..+
T Consensus 258 ~~~~~l~~~i~~~e~~~ 274 (880)
T PRK02224 258 AEIEDLRETIAETERER 274 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444433333
No 227
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.11 E-value=82 Score=31.50 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.5
Q ss_pred hhhhhhhchHHHHHHHHhHHhH
Q 003718 723 LGQLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~ 744 (800)
+..|..|..+|++.|..++.+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~ 95 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEV 95 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888777776663
No 228
>PF15265 FAM196: FAM196 family
Probab=45.97 E-value=1.5e+02 Score=35.51 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=30.6
Q ss_pred hhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003718 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (800)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~ 763 (800)
-|...||-||+.||+.|+.-.||.|=|.-=+||+|+
T Consensus 388 ~E~~dLqaqLQsmEe~L~SnQEtIKVLLnVIQDLEK 423 (514)
T PF15265_consen 388 GELCDLQAQLQSMEESLSSNQETIKVLLNVIQDLEK 423 (514)
T ss_pred cchHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 467899999999999999999999988766666665
No 229
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.88 E-value=93 Score=30.94 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 003718 754 LEAQLKVMQQTIEEL 768 (800)
Q Consensus 754 l~~~~~~~~~~l~~~ 768 (800)
|+++|+.++.+|.++
T Consensus 85 LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 85 LEEELEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 230
>PHA00728 hypothetical protein
Probab=45.69 E-value=17 Score=35.67 Aligned_cols=25 Identities=44% Similarity=0.618 Sum_probs=21.7
Q ss_pred hhhhhhhhhchHHHHHHHHhHHhHH
Q 003718 721 ANLGQLKQENHELKKRLEKKEGELQ 745 (800)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (800)
|-+.||++||.|||.+|.++|.-+-
T Consensus 5 teveql~keneelkkkla~leal~n 29 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 3489999999999999999988663
No 231
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=45.55 E-value=1.2e+02 Score=36.57 Aligned_cols=70 Identities=30% Similarity=0.460 Sum_probs=28.2
Q ss_pred hhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHhhh
Q 003718 727 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKK 796 (800)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l---i~~f~eer~~~~~e~~~l~~k 796 (800)
.+|+.+|.+-...++++...-+.....|+++|...+++.+.+.++++.+ .+.+.+|++--..+.+.++.+
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333323334444444444444333333333222 333444554443444444433
No 232
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.99 E-value=64 Score=27.80 Aligned_cols=49 Identities=33% Similarity=0.590 Sum_probs=28.1
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhH--------------HHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGEL--------------QEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
++-++.|..+...+...+.+.+.-| ..|++|...+..+++.++.+|+.|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345556666666665555555543 555666666666666666666554
No 233
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.98 E-value=95 Score=36.58 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 775 LIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 775 li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
=+.+.+||..++..+-++||++|+
T Consensus 353 dL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 353 DLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHh
Confidence 345678999999999999999985
No 234
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.80 E-value=1.3e+02 Score=30.59 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=10.0
Q ss_pred HHHHHhhHHHHHHHHhhhh
Q 003718 779 FAEERDRREREEENLRKKI 797 (800)
Q Consensus 779 f~eer~~~~~e~~~l~~kl 797 (800)
+.|=+.+-+.|..+||..+
T Consensus 129 i~e~~~ki~~ei~~lr~~i 147 (177)
T PF07798_consen 129 IQELNNKIDTEIANLRTEI 147 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 235
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.50 E-value=8 Score=36.44 Aligned_cols=74 Identities=36% Similarity=0.496 Sum_probs=19.4
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL---------------KVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~---------------~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
..-+..|..||.+|+.++..++..+..-.+....|...| ++|+..++++.++-+.+|+--.++-.
T Consensus 31 ~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~ 110 (131)
T PF05103_consen 31 AEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAE 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678889999999999888887644333333333333 34455566666666666554444433
Q ss_pred hHHHHHHHH
Q 003718 785 RREREEENL 793 (800)
Q Consensus 785 ~~~~e~~~l 793 (800)
+-..+-+.|
T Consensus 111 ~l~~~~~~l 119 (131)
T PF05103_consen 111 RLREEIEEL 119 (131)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 236
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=44.45 E-value=1.1e+02 Score=33.48 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=6.2
Q ss_pred HHHHHhhHHHHHHHH
Q 003718 779 FAEERDRREREEENL 793 (800)
Q Consensus 779 f~eer~~~~~e~~~l 793 (800)
|.++-.+-.+|-+.|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 444444444444443
No 237
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=44.43 E-value=72 Score=33.25 Aligned_cols=50 Identities=32% Similarity=0.498 Sum_probs=40.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHhhhhc
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKKIK 798 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~-~~l~~kl~ 798 (800)
+|-..++.+++++++..+++.++=+.+-+..-+|-.|++.|. ..+|+-|+
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~ 193 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVE 193 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566688889999999999999999999999999999998775 33444443
No 238
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.36 E-value=57 Score=30.04 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=12.3
Q ss_pred hhhhhhhchHHHHHHHHhHHh
Q 003718 723 LGQLKQENHELKKRLEKKEGE 743 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~ 743 (800)
+..|+.++..|...+..+.|+
T Consensus 21 ~~~L~~~~~~L~~~~R~~~Ge 41 (100)
T PF01486_consen 21 IAKLRKENESLQKELRHLMGE 41 (100)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 555666666666655555544
No 239
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=44.28 E-value=1e+02 Score=39.61 Aligned_cols=49 Identities=31% Similarity=0.432 Sum_probs=42.4
Q ss_pred HhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 003718 749 ERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~---k~~~~li~~f~eer~~~~~e~~~l~~kl 797 (800)
++-+.|.+.+++.+.++++++ ++=++-|+-+..|=+++|.|-+++|.-|
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~ 346 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL 346 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 666778888888888999999 8889999999999999999999887654
No 240
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=43.86 E-value=1.1e+02 Score=38.48 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=2.3
Q ss_pred EcCeee
Q 003718 406 IRGKDV 411 (800)
Q Consensus 406 LrGkkV 411 (800)
+||++|
T Consensus 112 ~n~~~~ 117 (1164)
T TIGR02169 112 LNGQRV 117 (1164)
T ss_pred ECCccc
Confidence 344433
No 241
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=43.67 E-value=1.7e+02 Score=28.38 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=18.8
Q ss_pred hhhhhhhhhchHHHHHHHHhHHhHHHHH
Q 003718 721 ANLGQLKQENHELKKRLEKKEGELQEER 748 (800)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 748 (800)
.+.++|+++...+...|+.++.+++.+.
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~ 63 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQ 63 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777765555
No 242
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.80 E-value=86 Score=31.30 Aligned_cols=68 Identities=26% Similarity=0.398 Sum_probs=46.0
Q ss_pred chHHHHHHHHhHHhHHHH-------HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHhhhh
Q 003718 730 NHELKKRLEKKEGELQEE-------RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKKI 797 (800)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e-------~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~-~~l~~kl 797 (800)
...+...|.++...+.+- .+|-..|+++++++++.++.+.+.=+.+-+..-+|..|+.++. ..|+.-|
T Consensus 119 ~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l 194 (218)
T cd07596 119 LQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554443222 2566778888888888888888888888888888999888764 3444433
No 243
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=42.16 E-value=1.1e+02 Score=28.91 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=41.8
Q ss_pred EeeeccCcccc-cccceEEEecCccchhh--hhh----ccCCCCCCcceeeeeec--cc------cCCCCcccchhh-hH
Q 003718 449 IGFVKDAKHHI-DVQGFNVYHKNRLIKPF--WRL----WNASGSDGRGVIGVLEA--NF------VEPAHDKQGFER-TT 512 (800)
Q Consensus 449 IGf~k~a~~~~-~~qGf~VYhkNRLIk~y--erV----g~~~~s~GrGVIGVlEa--nf------LePtHnKQDFe~-t~ 512 (800)
-||+..+.-.. .-.+.++|-|||.|..- .++ .......++.-+.||.. +- ++|+=..==|.+ ..
T Consensus 26 ~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~ 105 (119)
T PF01119_consen 26 EGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIEIPPSEVDVNVHPAKREVRFRDEDE 105 (119)
T ss_dssp EEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE-SGGGEEETSSTTTT-EEETTHHH
T ss_pred EEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEEcchHHccccccccceEEEecCHHH
Confidence 36665553222 34689999999999721 111 11233456666666443 31 677654445655 45
Q ss_pred HHHHHHHHHHHHH
Q 003718 513 VLARLEARLIQMQ 525 (800)
Q Consensus 513 ly~rLe~~L~q~l 525 (800)
++..+++.+.+.+
T Consensus 106 i~~~i~~~i~~~L 118 (119)
T PF01119_consen 106 ILNLIEEAIREAL 118 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777654
No 244
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=42.09 E-value=1.7e+02 Score=29.92 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=27.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
-.|+.-+.++.+++.+.+|.|||-..|+.-+-|
T Consensus 105 ~~cqKKEkEykealea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 105 QSCQKKEKEYKEALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888899999999999999988877765
No 245
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.09 E-value=99 Score=37.29 Aligned_cols=73 Identities=27% Similarity=0.514 Sum_probs=42.6
Q ss_pred hhhhhhhhchHHHHHHHHhHHh-------------HHHHHHhhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 722 NLGQLKQENHELKKRLEKKEGE-------------LQEERERCRSLEAQL----KVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~e~~~~k~l~~~~----~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
-|..|+..|.+|-|.|..+|.. ||....|-+.-..++ +...++|+.++.|++.-. ||+.
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kE----eE~e 311 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKE----EEIE 311 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3778888899988888755543 222223333333333 455566777777766543 4555
Q ss_pred hHHHHHHHHhhhhc
Q 003718 785 RREREEENLRKKIK 798 (800)
Q Consensus 785 ~~~~e~~~l~~kl~ 798 (800)
+-.+|...|+++++
T Consensus 312 ~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 312 KLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 65666666666553
No 246
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.92 E-value=92 Score=31.41 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=39.7
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 790 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~ 790 (800)
.+|.+....+-..|++.|.-+..+|+.++...+.=++ +|..+-||-..|-.-+.|+|-.+|.|-
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~-------kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSS-------KINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788889999999999999888844433222 233333333344444555666665554
No 247
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.91 E-value=1.8e+02 Score=31.02 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=24.3
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~ 763 (800)
-+.+|+.|...|+....+++..+.....+..+|++|++++++
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666555555555555555555444
No 248
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.88 E-value=1.4e+02 Score=33.36 Aligned_cols=71 Identities=30% Similarity=0.435 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCcccCCCCCcccccccchhhhhhhhhchHHHHHHHHhHHhH---HHHH---------HhhhcHHHHH--H
Q 003718 694 VRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGEL---QEER---------ERCRSLEAQL--K 759 (800)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~---------~~~k~l~~~~--~ 759 (800)
+|--|..|-|++ .|.+||-...|-.+||..+|-++ ...| +.|--.|+|| .
T Consensus 57 EQYLTPLQQKEV----------------~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALK 120 (305)
T PF15290_consen 57 EQYLTPLQQKEV----------------CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALK 120 (305)
T ss_pred HHhcChHHHHHH----------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666676663 25566665555556665555543 1111 5677777776 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003718 760 VMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 760 ~~~~~l~~~~k~~~~li~~f~ 780 (800)
||.+.|..|.+--|..-+-++
T Consensus 121 EARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 666666555554444444444
No 249
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.88 E-value=1.2e+02 Score=37.53 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=11.1
Q ss_pred hhhhhhcccCCCCCC
Q 003718 108 SCKQFWKAGDYEGAP 122 (800)
Q Consensus 108 ~~~~fwkag~y~~~~ 122 (800)
..|.+++.|.|+++.
T Consensus 112 LP~r~g~~~~~~~g~ 126 (717)
T PF10168_consen 112 LPRRWGKNGEFEDGK 126 (717)
T ss_pred eccccCccccccCCC
Confidence 456788889888755
No 250
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=41.76 E-value=1.2e+02 Score=39.44 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003718 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (800)
Q Consensus 754 l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~ 787 (800)
++.++++++.+|+++.++-..|-+.+.+-+..+.
T Consensus 854 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~ 887 (1163)
T COG1196 854 LEKELEELKEELEELEAEKEELEDELKELEEEKE 887 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333
No 251
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.54 E-value=1.6e+02 Score=32.57 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=44.2
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l 793 (800)
+|++++++- .+|..++..+..++++...|.-.++..+++|+.-..||..||.-++-+-.-..-|...|
T Consensus 149 ile~qk~dk----~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l 216 (265)
T COG3883 149 ILEQQKEDK----KSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAAL 216 (265)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 677777765 44555666666666666677777777777777777777777776665544444444433
No 252
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=41.26 E-value=2.4e+02 Score=31.67 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=52.4
Q ss_pred hhhhhhhhchHHHHHHHHhHHh----------H--HHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGE----------L--QEER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~----------~--~~e~--~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~ 787 (800)
.+..||.+..++.|+..|.==. | |-++ |+.-.|++.+-.+++++++..++-+.+...|..=|..++
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888887764222 1 2232 778888888888999999888888888888877776666
Q ss_pred HHHHHHh
Q 003718 788 REEENLR 794 (800)
Q Consensus 788 ~e~~~l~ 794 (800)
.=.+.|+
T Consensus 158 ~Lre~L~ 164 (302)
T PF09738_consen 158 ELREQLK 164 (302)
T ss_pred HHHHHHH
Confidence 5444444
No 253
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=41.10 E-value=93 Score=34.86 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=6.4
Q ss_pred hhhhhchHHHHHHHHh
Q 003718 725 QLKQENHELKKRLEKK 740 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~ 740 (800)
+|+++-.++++.+..+
T Consensus 3 el~~~~~~~~~~~r~l 18 (378)
T TIGR01554 3 ELKEQREEIVAEIRSL 18 (378)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 254
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=41.08 E-value=1.9e+02 Score=30.58 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=27.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHhhhh
Q 003718 751 CRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 751 ~k~l~~~~~~~~~~l~~~~k~~~~l---i~~f~eer~~~~~e~~~l~~kl 797 (800)
+++|+++-.-+..|...+.+||-+| |..|.||-..---|-+.|.++.
T Consensus 76 ~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 76 AKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 3344444444445556667777666 4677777666555555555543
No 255
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.61 E-value=88 Score=35.61 Aligned_cols=76 Identities=26% Similarity=0.379 Sum_probs=43.8
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHH-HHhh
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES-------LID----IFAE-ERDR 785 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~-------li~----~f~e-er~~ 785 (800)
.||..+.++++||.-|+-.|+....+....-+...+|-.+|.|+-+-..+++.|+-+ .|| ..++ |++-
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKV 210 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKV 210 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Confidence 356679999999988877666544333222244555555555555544444444333 222 2344 7777
Q ss_pred HH--HHHHHH
Q 003718 786 RE--REEENL 793 (800)
Q Consensus 786 ~~--~e~~~l 793 (800)
+| .|-.||
T Consensus 211 qDLm~EirnL 220 (401)
T PF06785_consen 211 QDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHH
Confidence 77 777665
No 256
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=40.47 E-value=2e+02 Score=30.65 Aligned_cols=68 Identities=25% Similarity=0.454 Sum_probs=43.8
Q ss_pred chHHHHHHHHhHHhHHHHH----Hhhh----cHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 730 NHELKKRLEKKEGELQEER----ERCR----SLE---------------AQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e~----~~~k----~l~---------------~~~~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
...+++.+.++|..|+.|- +-.+ .++ +++..++..+..++..-.+|=+.+.+||..|
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r 115 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEER 115 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777777777775554 1111 122 2224445566667777778888899999999
Q ss_pred HHHHHHHhhhh
Q 003718 787 EREEENLRKKI 797 (800)
Q Consensus 787 ~~e~~~l~~kl 797 (800)
.+..+.+...|
T Consensus 116 ~~~ie~~~~~l 126 (247)
T PF06705_consen 116 PQDIEELNQEL 126 (247)
T ss_pred hHHHHHHHHHH
Confidence 88887766554
No 257
>PRK09039 hypothetical protein; Validated
Probab=40.35 E-value=1e+02 Score=34.79 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=25.8
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
+..|++|...||+.|..+|+.|..--.+.+....+++++++.|+.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665333333345555555555555544
No 258
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.31 E-value=1.3e+02 Score=37.05 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=19.3
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~ 763 (800)
.++.|.......++++..+...|+....+++.|..++...++
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~ 269 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTR 269 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454555555555555555544444444444444433333
No 259
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.02 E-value=73 Score=42.53 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=34.8
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ 772 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~ 772 (800)
.|+.-|++++++...+++.+++.+..+++-..+-++|.+.+++++++++++..+-
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~ 1043 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQEL 1043 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677777777777777777766655444455666666666666666655443
No 260
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=39.79 E-value=1.2e+02 Score=34.02 Aligned_cols=64 Identities=27% Similarity=0.352 Sum_probs=47.5
Q ss_pred hhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHH--------------HHHHHHHHHHHHHh
Q 003718 721 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNK--------------EQESLIDIFAEERD 784 (800)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k--------------~~~~li~~f~eer~ 784 (800)
.-+|.+++--.+|.-.|..+|..|..|+||-|.=.-++.++.| +-|||.+ |..|=|--|--||.
T Consensus 182 ~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk 260 (302)
T PF07139_consen 182 SSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSERK 260 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Confidence 3467788888899999999999999999999987777776665 5665543 33344556666664
No 261
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.74 E-value=1.6e+02 Score=34.31 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=8.4
Q ss_pred EEEEcccccCCCceeccCC
Q 003718 332 IIIYNLWEDDQGLLELDFD 350 (800)
Q Consensus 332 III~NL~~~~~G~~ELDFd 350 (800)
|.+.|+....+...+++|+
T Consensus 7 l~l~nf~s~~~~~~~i~f~ 25 (562)
T PHA02562 7 IRYKNILSVGNQPIEIQLD 25 (562)
T ss_pred EEEEcccccCCCceEEEEc
Confidence 4445555432223455554
No 262
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=39.73 E-value=1.1e+02 Score=32.12 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=48.6
Q ss_pred hhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHhhhhc
Q 003718 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKKIK 798 (800)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~-~~l~~kl~ 798 (800)
++....++++.|++..-+ -||--.|+.++.+++++.+++.++=+.+-+.+-+|=.|++.|. ..++.-|+
T Consensus 130 ~~l~kkr~~~~Kl~~~~~--~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~ 199 (224)
T cd07623 130 QTLTKKREAKAKLELSGR--TDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIII 199 (224)
T ss_pred HHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555543221 2577788899999999999999999999999999999998774 34444443
No 263
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.64 E-value=1.2e+02 Score=38.82 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=39.5
Q ss_pred chhhhhhhhhchHHHHHHHHhHHh----------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGE----------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 789 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e 789 (800)
...|+.+++.+.+-+.++++.|-+ |++|+...+..-++++.....|+.-.-++++=|+--..+++.-.+|
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 444555666665555555555444 3444444444444444444444444444555555555555555555
Q ss_pred HHHHhhhh
Q 003718 790 EENLRKKI 797 (800)
Q Consensus 790 ~~~l~~kl 797 (800)
.+.+.+|+
T Consensus 873 l~~~k~k~ 880 (1174)
T KOG0933|consen 873 LKDQKAKQ 880 (1174)
T ss_pred HHHHHHHH
Confidence 55555554
No 264
>PF14772 NYD-SP28: Sperm tail
Probab=39.53 E-value=2.8e+02 Score=25.69 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=37.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 790 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~ 790 (800)
.++.-|-..|+..+++.+.+...-.+||..|.+|=...|.+=
T Consensus 51 ~~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy 92 (104)
T PF14772_consen 51 KKPQELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQY 92 (104)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999887766553
No 265
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=39.39 E-value=1.5e+02 Score=37.14 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=4.0
Q ss_pred hhhchHHHHHH
Q 003718 727 KQENHELKKRL 737 (800)
Q Consensus 727 ~~~~~~~~~~~ 737 (800)
.++...+++++
T Consensus 837 ~~~~~~~~~~l 847 (1179)
T TIGR02168 837 ERRLEDLEEQI 847 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 266
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.35 E-value=1.2e+02 Score=38.33 Aligned_cols=41 Identities=32% Similarity=0.398 Sum_probs=29.6
Q ss_pred hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 740 KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 740 ~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
..++++..+++.+.+.++++.++.+++.+..+++.|.+..-
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666788888888888888888777777777654443
No 267
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.30 E-value=1.4e+02 Score=36.38 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=26.4
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
..+|+.|+.-+++|+..+-+.+..=.+..+....++++++++|.++
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788887777775333333333444444444444444
No 268
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.15 E-value=1.4e+02 Score=30.13 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=7.5
Q ss_pred hhcHHHHHHHHHHHHHHH
Q 003718 751 CRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 751 ~k~l~~~~~~~~~~l~~~ 768 (800)
+..|..+++++|.+.+++
T Consensus 53 ~eeLk~~i~~lq~~~~~~ 70 (155)
T PF06810_consen 53 NEELKKQIEELQAKNKTA 70 (155)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 269
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.11 E-value=1.9e+02 Score=34.39 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=4.6
Q ss_pred ccchhhhhhh
Q 003718 718 SLGANLGQLK 727 (800)
Q Consensus 718 ~~~~~~~~~~ 727 (800)
-|.|++.++|
T Consensus 60 TlrTlva~~k 69 (472)
T TIGR03752 60 TLRTLVAEVK 69 (472)
T ss_pred hHHHHHHHHH
Confidence 3455554433
No 270
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=38.91 E-value=1.4e+02 Score=27.19 Aligned_cols=47 Identities=32% Similarity=0.483 Sum_probs=22.9
Q ss_pred hhhhhhchHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHH
Q 003718 724 GQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~k~l~~~~~~~~~~l~~~~k 770 (800)
.+++.+-..|.+.|...+..|..++ ++.+.|.++++.++..+..+..
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554444 3344444555444444444433
No 271
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=38.76 E-value=82 Score=34.41 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=45.6
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhHHHHHHHHhhhh
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID-------------IFAEERDRREREEENLRKKI 797 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~-------------~f~eer~~~~~e~~~l~~kl 797 (800)
.+.+||+..+...-+.=.+.-..|+.++.+-++||+.+++-+..--+ .-.|...|...|-+.|..|+
T Consensus 176 ~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~ 255 (259)
T PF08657_consen 176 PGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKK 255 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 36667766665555444466677888888888899998875444322 45566666677777777766
Q ss_pred c
Q 003718 798 K 798 (800)
Q Consensus 798 ~ 798 (800)
+
T Consensus 256 ~ 256 (259)
T PF08657_consen 256 R 256 (259)
T ss_pred H
Confidence 4
No 272
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=38.74 E-value=10 Score=46.13 Aligned_cols=76 Identities=30% Similarity=0.470 Sum_probs=0.0
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHhhH---HHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES---L---IDIFAEERDRR---EREEENL 793 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~---l---i~~f~eer~~~---~~e~~~l 793 (800)
+..|+.+...|++.+.++|+.+...+.+|..|+.++.+++++.+++....+. | +|++-++.+|- +.+.++.
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777666555667777777787777777766644332 2 46666666553 4466888
Q ss_pred hhhhc
Q 003718 794 RKKIK 798 (800)
Q Consensus 794 ~~kl~ 798 (800)
|+||+
T Consensus 321 KkKLe 325 (713)
T PF05622_consen 321 KKKLE 325 (713)
T ss_dssp -----
T ss_pred HHHHH
Confidence 88886
No 273
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.74 E-value=1.3e+02 Score=34.05 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=43.9
Q ss_pred hhhhhhhchHHHHHHHHhHHhH--HHH-H----------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGEL--QEE-R----------------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~--~~e-~----------------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer 783 (800)
-++|+.|..+|+.||...++++ .+| + +....|-.|||.++.|++.+.-+--+++|--.|=-
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~ 160 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELV 160 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777887777773 122 1 44556788889999999999888888888877633
No 274
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.61 E-value=1.6e+02 Score=36.72 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=7.3
Q ss_pred HHHHHHhhcchhh
Q 003718 155 GAFAELLDNSLDE 167 (800)
Q Consensus 155 ~AIAELIDNAiDA 167 (800)
..+.+.|++++|.
T Consensus 124 ~~l~~~i~~~id~ 136 (771)
T TIGR01069 124 PPLENDIIACIDD 136 (771)
T ss_pred HHHHHHHHHHhCC
Confidence 3455556666664
No 275
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.22 E-value=1.1e+02 Score=35.86 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=7.4
Q ss_pred HHHHHHhhhhc
Q 003718 788 REEENLRKKIK 798 (800)
Q Consensus 788 ~e~~~l~~kl~ 798 (800)
+|-|+||.-|+
T Consensus 309 kelE~lR~~L~ 319 (575)
T KOG4403|consen 309 KELEQLRVALE 319 (575)
T ss_pred HHHHHHHHHHH
Confidence 57777776654
No 276
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=38.20 E-value=40 Score=37.93 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=29.4
Q ss_pred hhhhhhhchHHHHHHHHhHHhHH---HHH----HhhhcHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQ---EER----ERCRSLEAQLKVM 761 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~---~e~----~~~k~l~~~~~~~ 761 (800)
+..|..++.+|++||..++.+|+ +.| +||+.|++-|-||
T Consensus 177 v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 177 VILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55678899999999999888863 333 7777777777655
No 277
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=38.01 E-value=91 Score=28.61 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=36.9
Q ss_pred HHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 744 LQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 744 ~~~e~-~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
+..|+ ..+++|+.+|+|+++.+.-+.+.-+.- .+=.+|..+|.+=...+|.+++
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 34555 677888888888888666655443333 5557888888888888887764
No 278
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.94 E-value=77 Score=38.95 Aligned_cols=67 Identities=24% Similarity=0.345 Sum_probs=51.3
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhH----HHHHHhhhcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGEL----QEERERCRSLE--AQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~e~~~~k~l~--~~~~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
.+-+.+|..||.-||+||..+|+.= -.+.--...+. ..+-.++++.+.++|-..-|.++|+-++--+
T Consensus 558 k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eF 630 (716)
T KOG4593|consen 558 KNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQEF 630 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999999999872 22222223333 4777888999999999999999999877543
No 279
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.85 E-value=37 Score=34.17 Aligned_cols=47 Identities=30% Similarity=0.443 Sum_probs=24.1
Q ss_pred hhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003718 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~ 773 (800)
+|+.|..+|++-+... +.|.|.-|--.|+-++..++.+||+++++..
T Consensus 44 ~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 44 QLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333332 3466666666666666666666666555543
No 280
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=37.83 E-value=1.4e+02 Score=37.27 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=5.2
Q ss_pred hhhhhhchHHHHHH
Q 003718 724 GQLKQENHELKKRL 737 (800)
Q Consensus 724 ~~~~~~~~~~~~~~ 737 (800)
.+++++..+++..+
T Consensus 799 ~~~~~~l~~~~~~~ 812 (1179)
T TIGR02168 799 KALREALDELRAEL 812 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 281
>PRK14153 heat shock protein GrpE; Provisional
Probab=37.75 E-value=1.1e+02 Score=32.25 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=9.6
Q ss_pred hhhhhhhchHHHHHHHHhHHh
Q 003718 723 LGQLKQENHELKKRLEKKEGE 743 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~ 743 (800)
|..|+++..+|++++++..++
T Consensus 42 i~~l~~e~~elkd~~lR~~AE 62 (194)
T PRK14153 42 TEKCREEIESLKEQLFRLAAE 62 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 282
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.70 E-value=1.4e+02 Score=26.21 Aligned_cols=42 Identities=31% Similarity=0.490 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003718 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~ 773 (800)
+++|||.+.|..+-.-.+.-..||.+....+++++.+++.-+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555433223333344444444444444444333
No 283
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.67 E-value=98 Score=33.48 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=17.6
Q ss_pred CcccccccchhhhhhhhhchHHHHHHHHhHHh
Q 003718 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEGE 743 (800)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (800)
-.|++..+..-+.+++.+..+++..+..++..
T Consensus 71 ~~ld~~~~~~~l~~a~a~l~~~~~~~~~~~~~ 102 (334)
T TIGR00998 71 VRLDPTNAELALAKAEANLAALVRQTKQLEIT 102 (334)
T ss_pred EEECchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666655555666666555555555444443
No 284
>PRK02224 chromosome segregation protein; Provisional
Probab=37.38 E-value=1.3e+02 Score=37.41 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=12.1
Q ss_pred eeEEEEECCCCCCHHhHHHhhh
Q 003718 188 RMLLIEDNGGGMNPDKMRHCMS 209 (800)
Q Consensus 188 ~~L~I~DNG~GM~~eeL~~~Ls 209 (800)
-.+.+-.||.| ...|..+|.
T Consensus 25 ~~~i~G~Ng~G--KStil~ai~ 44 (880)
T PRK02224 25 VTVIHGVNGSG--KSSLLEACF 44 (880)
T ss_pred eEEEECCCCCC--HHHHHHHHH
Confidence 45667777777 345555444
No 285
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=37.27 E-value=1.7e+02 Score=26.36 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=22.7
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHh
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERER 750 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 750 (800)
+..|..|+.+|-.+|.+.+++++...+.
T Consensus 5 v~~l~~EkeeL~~klk~~qeel~~~k~~ 32 (69)
T PF08912_consen 5 VANLAKEKEELNNKLKKQQEELQKLKEE 32 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998887665543
No 286
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.99 E-value=1.5e+02 Score=38.59 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=16.1
Q ss_pred ceeEEEEECCCCCCHHhHHHhhh--cCcc
Q 003718 187 SRMLLIEDNGGGMNPDKMRHCMS--LGYS 213 (800)
Q Consensus 187 ~~~L~I~DNG~GM~~eeL~~~Ls--fG~S 213 (800)
.....|-=||+| ...|..++. +|..
T Consensus 25 ~~t~IvGPNGSG--KSNI~DAi~fVLG~~ 51 (1163)
T COG1196 25 GFTAIVGPNGSG--KSNIVDAIRFVLGEQ 51 (1163)
T ss_pred CCeEEECCCCCc--hHHHHHHHHHHhCcc
Confidence 456777888888 455666543 5655
No 287
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.93 E-value=78 Score=29.14 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=27.9
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 003718 736 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ 772 (800)
Q Consensus 736 ~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~ 772 (800)
+|+|...+|++-++|.--+.++|.++++|..++.+.|
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~E 38 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLE 38 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888888777765543
No 288
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=36.84 E-value=1.3e+02 Score=39.31 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=18.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003718 744 LQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 744 ~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
+..|.++.+.|+.++.+.+.+|+.+.+....+
T Consensus 503 ~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 503 LSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666667776666666666665544444
No 289
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=36.60 E-value=1e+02 Score=26.74 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=37.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~ 771 (800)
.++.+||..+|..++.=.+.|+...+.+.-+++-+|++-|-
T Consensus 4 k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 4 KDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999998764
No 290
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=36.44 E-value=2.7e+02 Score=23.70 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=18.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 745 QEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 745 ~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
+..+.+++.+...+...+.+++.++..-..|++.
T Consensus 37 ~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~ 70 (105)
T PF00435_consen 37 EEQLKKHKELQEEIESRQERLESLNEQAQQLIDS 70 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334555555555555555555555555555443
No 291
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=36.31 E-value=2.2e+02 Score=26.95 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=30.0
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI 765 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l 765 (800)
.+.++-+++.++.++|...+.+-..=..+++.|..+++++.++.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~ 47 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQ 47 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677888888888888887775554566666666665555443
No 292
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.12 E-value=1.1e+02 Score=26.62 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003718 754 LEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 754 l~~~~~~~~~~l~~~~k~~~~l 775 (800)
++.+|++++.+..++..+-+.|
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 293
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=35.87 E-value=56 Score=36.42 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=31.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 745 QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 745 ~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
++..|--||||-|+-.+|.|-..|+.|..+|.|++.
T Consensus 308 RKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 308 RKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred HhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 333466789999999999999999999999999875
No 294
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.86 E-value=2.6e+02 Score=29.26 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=34.5
Q ss_pred cccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003718 717 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (800)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~ 771 (800)
.+|.. |=.|+..-..+.+.++++|..+..+-...+.|++.+.+++++|.++..+
T Consensus 93 ~RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 93 SRLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444 4456666677777777777777666555566777777777776666443
No 295
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.63 E-value=2.7e+02 Score=28.90 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=37.9
Q ss_pred chhhhhhhhhchHHHHHHHHhHHh---------HHHHH------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 003718 720 GANLGQLKQENHELKKRLEKKEGE---------LQEER------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE--- 781 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~e~------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e--- 781 (800)
+..|..+++|+..+=.++..+-++ ++.|. ++...|+++.++++.++.++.+.-+.+..-+.|
T Consensus 83 GlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777666655554443 12221 444455555555555555554444444433333
Q ss_pred -HHhhHHHHHHHHh
Q 003718 782 -ERDRREREEENLR 794 (800)
Q Consensus 782 -er~~~~~e~~~l~ 794 (800)
+.+++..|.+.|+
T Consensus 163 ~~~k~~~~ei~~lk 176 (189)
T PF10211_consen 163 EEEKKHQEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 3444544544444
No 296
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=35.36 E-value=75 Score=38.49 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=33.9
Q ss_pred hhchHHHHHHHHhHHhH-------HHHHHh----hhcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 728 QENHELKKRLEKKEGEL-------QEERER----CRSLEAQLK-VMQQTIEELNKEQESLIDIFAEER 783 (800)
Q Consensus 728 ~~~~~~~~~~~~~~~~~-------~~e~~~----~k~l~~~~~-~~~~~l~~~~k~~~~li~~f~eer 783 (800)
+.+-+++||+++++++| |+|+++ ||.|. ||. ---.+--.+.|.-.+|||.+||--
T Consensus 226 K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr-~lll~kd~k~i~~kklKkSLIDMYSEVL 292 (980)
T KOG0447|consen 226 KRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELR-KLVLQKDDKGIHHRKLKKSLIDMYSEVL 292 (980)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhhccchhhHHHHHHHHHHHHHHHHH
Confidence 45666777777777775 666643 44444 321 111133456777889999999853
No 297
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=35.05 E-value=81 Score=36.70 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=40.8
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLI 776 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~k~l~~~~~~~~~~l~~~~k~~~~li 776 (800)
+=++.+|...||+-+.|++..|++-. ---+.|.++|.+++++|+.++-.+.+|-
T Consensus 415 lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls 471 (486)
T KOG2185|consen 415 LVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALS 471 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777888888777775544 3456789999999999999987776653
No 298
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.99 E-value=2.8e+02 Score=27.97 Aligned_cols=48 Identities=27% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
|.+|=.+...+|..=.+.++..+..+++++++|+++.+|-..+++--.
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~ 95 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444466666667777778888888877776665443
No 299
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.96 E-value=3.8e+02 Score=25.99 Aligned_cols=61 Identities=28% Similarity=0.231 Sum_probs=35.3
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer 783 (800)
+..|..|...+++++...+..++.=++..+.....+.+||++.|.-=.-....|..++.-|
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr 65 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLR 65 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4556666667777766666666666666666666676666665533333333344443333
No 300
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.95 E-value=1.9e+02 Score=25.97 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 774 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~ 774 (800)
++.+|......+=+.+.-++.++..-.+++..|.++-+.+++..+.+..+|.+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 301
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=34.92 E-value=1.9e+02 Score=28.93 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=36.0
Q ss_pred hhhhchHHHHHHHHhHHhHHHHHHhhhcHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003718 726 LKQENHELKKRLEKKEGELQEERERCRSLEA-------------QLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (800)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~-------------~~~~~~~~l~~~~k~~~~li~~f~eer~~~~ 787 (800)
|..|..-|+|=|.|+++-++.=+-.|...+. +-.+.+.|||++-..-..|.+.+..+|-.|+
T Consensus 46 L~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~eck~R~~fe~qLE~lm~qHKdLwefh~~erLa~E 120 (134)
T PF15233_consen 46 LNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQECKLRLDFEEQLEDLMGQHKDLWEFHMPERLARE 120 (134)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334444567777777775322222221111 1345667888888888888888887765543
No 302
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=33.85 E-value=1.1e+02 Score=37.46 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=26.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE 767 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~ 767 (800)
.+-++.|.-.||-||+|+-.+-+||+|-.|+-..+-+
T Consensus 149 e~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSe 185 (861)
T KOG1899|consen 149 EEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSE 185 (861)
T ss_pred HHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Confidence 4445677788888899998888888876555443333
No 303
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=33.82 E-value=3.2e+02 Score=28.37 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=19.8
Q ss_pred hhhhhhhhchHHHHHHHHhHHhH
Q 003718 722 NLGQLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~ 744 (800)
=|.+|.+||.+|+.-|..-+.-|
T Consensus 71 qi~~Lq~EN~eL~~~leEhq~al 93 (181)
T PF05769_consen 71 QIRQLQQENRELRQSLEEHQSAL 93 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998877765
No 304
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.80 E-value=1.6e+02 Score=37.02 Aligned_cols=70 Identities=30% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 727 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
+|.-.|-|.++.++|. -.+|++|-|.|+=+--..+.-|...|+|||-++- +-+--..+.+|++-|..||.
T Consensus 385 ~qrEEerkkeie~rEa-ar~ElEkqRqlewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 385 RQREEERKKEIERREA-AREELEKQRQLEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
No 305
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=33.70 E-value=2.5e+02 Score=33.37 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=21.1
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEER 748 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 748 (800)
..+|...+.+...|..+|..+....+.++
T Consensus 250 ~~~i~~a~~~i~~L~~~l~~l~~~~~~~l 278 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELAELKEEEEEEL 278 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888877776654444
No 306
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.47 E-value=1.8e+02 Score=31.30 Aligned_cols=37 Identities=38% Similarity=0.566 Sum_probs=21.4
Q ss_pred hhhchHHHHHHHHhHHhH---HHHH----HhhhcHHHHHHHHHH
Q 003718 727 KQENHELKKRLEKKEGEL---QEER----ERCRSLEAQLKVMQQ 763 (800)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~---~~e~----~~~k~l~~~~~~~~~ 763 (800)
..+..+|.+||..+++++ +.++ ++-..|++++..++.
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee 47 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE 47 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888777775 2222 444555555544443
No 307
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.42 E-value=1.4e+02 Score=35.58 Aligned_cols=53 Identities=11% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003718 737 LEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 789 (800)
Q Consensus 737 ~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e 789 (800)
+...-++++.|++.....++.+++++++++++.++-+.+-..++..|..-..+
T Consensus 327 l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~ 379 (563)
T TIGR00634 327 VLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAER 379 (563)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456778888888888899999999999998888888888887765544
No 308
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=33.15 E-value=1.4e+02 Score=32.66 Aligned_cols=43 Identities=28% Similarity=0.227 Sum_probs=21.4
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l 793 (800)
.++++|-.+-.++...||++++|..-|.+.-. -+.+=.||||-
T Consensus 118 ~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~--~~~~v~eee~~ 160 (292)
T KOG4005|consen 118 AINESLLAKNHELDSELELLRQELAELKQQQQ--HNTRVIEEENA 160 (292)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH--HhhHHHhhhhh
Confidence 45555555555555556655555544444322 23344455543
No 309
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.06 E-value=2.6e+02 Score=31.55 Aligned_cols=75 Identities=27% Similarity=0.381 Sum_probs=54.4
Q ss_pred hhhhhhhc---hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHhhh
Q 003718 723 LGQLKQEN---HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER---EEENLRKK 796 (800)
Q Consensus 723 ~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~---e~~~l~~k 796 (800)
.+||..-| .+|.+=|.++.++..+-.+.--+|.+|+-++|+++...--|.|-|.-.+.+.++...+ |-..|+.|
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333 3455555555555544446667899999999999999999999999999999887765 67777777
Q ss_pred h
Q 003718 797 I 797 (800)
Q Consensus 797 l 797 (800)
.
T Consensus 285 Y 285 (306)
T PF04849_consen 285 Y 285 (306)
T ss_pred H
Confidence 5
No 310
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.00 E-value=1.3e+02 Score=30.79 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=18.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLI 776 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li 776 (800)
++.+.+.+++++++++|+.+++|-++|.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777666655553
No 311
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.97 E-value=2.4e+02 Score=29.63 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=28.0
Q ss_pred chHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 730 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
..-|.+|=.+.+.+|..=...+...++.+++.+++|.++.+|=..+|+
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555655555555444455555555566666777777766655554
No 312
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.70 E-value=1.9e+02 Score=35.66 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=22.2
Q ss_pred hhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 727 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
++++..|+.+|..++..+..-.+.++.+...++++-+.+.++
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544555555555555555544444
No 313
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.70 E-value=99 Score=29.08 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
.|++|+..+|+.+..=-.+-+.|+++++++|++|.++
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433322233344445555555554443
No 314
>PF15456 Uds1: Up-regulated During Septation
Probab=32.68 E-value=2.4e+02 Score=27.65 Aligned_cols=59 Identities=32% Similarity=0.324 Sum_probs=40.9
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHH------------------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEER------------------------ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~------------------------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
+..||+|...|..|+.-....+.-|. +-.+.-+++|....++++++..+-+.+-+=
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R 103 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENR 103 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67899999999999988887764443 113344666777777888887776665443
Q ss_pred HHH
Q 003718 779 FAE 781 (800)
Q Consensus 779 f~e 781 (800)
.++
T Consensus 104 ~~~ 106 (124)
T PF15456_consen 104 LAE 106 (124)
T ss_pred HHH
Confidence 333
No 315
>PF14501 HATPase_c_5: GHKL domain
Probab=32.56 E-value=70 Score=28.80 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHHhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEECCCC
Q 003718 154 LGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGG 198 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~G 198 (800)
...++-|+|||++|+... ...|.|.+... ++..+|.|.-.-..
T Consensus 7 ~~il~nlldNAiea~~~~~~~~~I~i~~~~~--~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 7 CRILGNLLDNAIEACKKYEDKRFISISIREE--NGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--CCEEEEEEEECCCC
Confidence 356899999999997642 34566666553 46666766655333
No 316
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=32.55 E-value=1.4e+02 Score=34.92 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 759 KVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 759 ~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
+.+.++|+++.|+|+.|=+.+.|.+.++
T Consensus 193 ~~L~q~lk~le~~~~~l~~~l~e~~~~~ 220 (447)
T KOG2751|consen 193 ERLLQQLEELEKEEAELDHQLKELEFKA 220 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888899988888777765544
No 317
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.55 E-value=1.9e+02 Score=36.34 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=30.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003718 744 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (800)
Q Consensus 744 ~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~ 785 (800)
|+...+..++|+.|+.+++..++++...=.+|-+-+.+||..
T Consensus 654 l~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~ 695 (769)
T PF05911_consen 654 LKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERAL 695 (769)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344447777888888888888888887777777777777653
No 318
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=32.50 E-value=15 Score=43.40 Aligned_cols=17 Identities=47% Similarity=0.655 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHhhh
Q 003718 780 AEERDRREREEENLRKK 796 (800)
Q Consensus 780 ~eer~~~~~e~~~l~~k 796 (800)
+|||=|+-|||+....|
T Consensus 420 SE~RLr~QQ~eKd~qmk 436 (495)
T PF12004_consen 420 SEERLRRQQEEKDSQMK 436 (495)
T ss_dssp -----------------
T ss_pred hHHHHHHHhhhhHHHHH
Confidence 67777777777766655
No 319
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.41 E-value=1.6e+02 Score=33.73 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=36.9
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
..-++.|+++...|..++.++++.| +++.....|+.++++||+.+.|+.+-+..+.++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l----~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKL----EKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457777777777766666665544 444466677777777777777776665555443
No 320
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.29 E-value=2.5e+02 Score=33.31 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 775 LIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 775 li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
+-+...+||+.|-..-+.|+.+|+
T Consensus 365 i~~~v~~Er~~~~~~l~~~~~~~~ 388 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLAELNSRLK 388 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888887777777764
No 321
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=32.27 E-value=3.2e+02 Score=27.51 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=32.2
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (800)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer 783 (800)
-|.+|=.+.+.+++.=.+.+...++.+.+++++|+++.+|-..+++--.+|-
T Consensus 44 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea 95 (173)
T PRK13460 44 ALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDA 95 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444466666667777777788887777766666544443
No 322
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=32.23 E-value=98 Score=25.65 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=31.4
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
.|+.|+++|....-+|.+-+...++-+ .-.+...++|++++++++.+
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~----~l~~~c~~~L~~~e~~i~~l 53 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGM----ELIKKCQERLEEAEQKIEEL 53 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhC
Confidence 467788888888888888777766553 23344566788888887653
No 323
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.15 E-value=2.7e+02 Score=33.08 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=13.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
+|-|.++.|+++.+.-=+-|+|.|...++-+.
T Consensus 389 ~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 389 TKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444443333222334455555444443
No 324
>PRK03918 chromosome segregation protein; Provisional
Probab=31.94 E-value=2.4e+02 Score=34.90 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.3
Q ss_pred EEEEcccc
Q 003718 332 IIIYNLWE 339 (800)
Q Consensus 332 III~NL~~ 339 (800)
|.|.|++.
T Consensus 6 l~i~nf~~ 13 (880)
T PRK03918 6 LKIKNFRS 13 (880)
T ss_pred EEEeCccC
Confidence 33444443
No 325
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.70 E-value=2e+02 Score=34.46 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=35.3
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIE 766 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~k~l~~~~~~~~~~l~ 766 (800)
...|.+++++|..|+.-|..+..+. ..|.+..+.|+++|++++++++
T Consensus 316 ~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 316 PDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 4458899999999999999888883 5666777777777766666555
No 326
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.69 E-value=4.6e+02 Score=32.74 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHhhhhc
Q 003718 782 ERDRREREEENLRKKIK 798 (800)
Q Consensus 782 er~~~~~e~~~l~~kl~ 798 (800)
|-.+.++|..+||.|+.
T Consensus 148 e~~~k~ae~~~lr~k~d 164 (716)
T KOG4593|consen 148 EKEDKLAELGTLRNKLD 164 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566788999999874
No 327
>PRK14141 heat shock protein GrpE; Provisional
Probab=31.61 E-value=1.3e+02 Score=32.14 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=40.4
Q ss_pred cccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 717 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
++++.-|..|++|..+|++++++..++++-=+ |-++.+.+++.+ -++.+-++---++|-|
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~R---KR~~kE~e~~~~~a~~~~~~dLLpViDnL 94 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLR---KRTQRDVADARAYGIAGFARDMLSVSDNL 94 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 55677799999999999999988777654322 334444455444 5666666666666666
No 328
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.39 E-value=1.9e+02 Score=26.16 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=28.9
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
.+.|-.+-.+||-||++...-++.==+=.++.++|.++++ .||+-+..+..++.-|.
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~-~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIE-ELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4455556666777776665554332245556665554433 33333444444444443
No 329
>PRK14144 heat shock protein GrpE; Provisional
Probab=31.22 E-value=1.1e+02 Score=32.50 Aligned_cols=8 Identities=63% Similarity=0.725 Sum_probs=2.9
Q ss_pred HhhHHHHH
Q 003718 783 RDRREREE 790 (800)
Q Consensus 783 r~~~~~e~ 790 (800)
|.|-.+|.
T Consensus 79 RKR~~kE~ 86 (199)
T PRK14144 79 RRRMEREV 86 (199)
T ss_pred HHHHHHHH
Confidence 33333333
No 330
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=31.21 E-value=1.6e+02 Score=35.85 Aligned_cols=59 Identities=29% Similarity=0.421 Sum_probs=46.6
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
.-+|.+...||..|-.-++..+.+++.|+++-+ .|+..++++++..+.+-+-|-+-+..
T Consensus 284 ~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~---~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 284 GSVLNQKDSEIAQLSNDIERLEASLVEEREKHK---AQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446788889999999999999999999997654 57777777887777777777665543
No 331
>PRK02119 hypothetical protein; Provisional
Probab=31.21 E-value=2.6e+02 Score=25.00 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=28.3
Q ss_pred hchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
|-+.+.+||..+|.-+---=+-...|-..+-.-+++|..+.++...|.+-+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788887777533223334444444444555666555555555544
No 332
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.12 E-value=1.3e+02 Score=35.12 Aligned_cols=55 Identities=29% Similarity=0.441 Sum_probs=37.9
Q ss_pred hhhhchHHHHHHHH--hHHhHHHHHHhhhcHHHHHH----HHHHHHHHHHHHH---HHHHHHHH
Q 003718 726 LKQENHELKKRLEK--KEGELQEERERCRSLEAQLK----VMQQTIEELNKEQ---ESLIDIFA 780 (800)
Q Consensus 726 ~~~~~~~~~~~~~~--~~~~~~~e~~~~k~l~~~~~----~~~~~l~~~~k~~---~~li~~f~ 780 (800)
++.|.--|+++|.+ -+.+|..|++|.+.+++.|- .++++|+++.+.. |-+|+-++
T Consensus 119 ~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 119 LEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455566777777 67778999999988888774 4577777776643 44555555
No 333
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.99 E-value=3.2e+02 Score=28.61 Aligned_cols=51 Identities=24% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
.+|=...+++|..=-+.+...++.+++++++|+++..|-..+++--.+|..
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333444555556677777777777776666655444443
No 334
>PRK01156 chromosome segregation protein; Provisional
Probab=30.89 E-value=2.2e+02 Score=35.55 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=13.0
Q ss_pred eeEEEEECCCCCCHHhHHHhhh
Q 003718 188 RMLLIEDNGGGMNPDKMRHCMS 209 (800)
Q Consensus 188 ~~L~I~DNG~GM~~eeL~~~Ls 209 (800)
-.+.+-+||.| ...|..++.
T Consensus 25 i~~I~G~NGsG--KSsileAI~ 44 (895)
T PRK01156 25 INIITGKNGAG--KSSIVDAIR 44 (895)
T ss_pred eEEEECCCCCC--HHHHHHHHH
Confidence 56777788888 455556554
No 335
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=30.86 E-value=83 Score=36.07 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=51.0
Q ss_pred HHHHHHHhhcchhhhhc--CCceeEEEEEEccCCCceeEEEEECCCCCCHHhHHHhhhcCccccccCCcccCcccccccc
Q 003718 154 LGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (800)
Q Consensus 154 F~AIAELIDNAiDA~~~--gAt~V~Idi~~~~~~g~~~L~I~DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (800)
-+|+--.++-|+.-+.. +|+.|.|.+. ..++.-.+.|.|||.|.+..++..- +.|+|+..
T Consensus 357 ~talyRv~QEaltNIErHa~Atrv~ill~--~~~d~vql~vrDnG~GF~~~~~~~~----------------~~GiGLRN 418 (459)
T COG4564 357 ATALYRVVQEALTNIERHAGATRVTILLQ--QMGDMVQLMVRDNGVGFSVKEALQK----------------RHGIGLRN 418 (459)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEEec--cCCcceEEEEecCCCCccchhhccC----------------cccccccc
Confidence 35555555555554433 6787777664 3367788999999999887776532 15788762
Q ss_pred ---cccccCCeEEEEeeecC
Q 003718 232 ---STMRLGADVIVFSCCCG 248 (800)
Q Consensus 232 ---AsmrLG~~V~V~SK~~g 248 (800)
-.-.+|-.++|.|-..|
T Consensus 419 MrERma~~GG~~~v~s~p~G 438 (459)
T COG4564 419 MRERMAHFGGELEVESSPQG 438 (459)
T ss_pred HHHHHHHhCceEEEEecCCC
Confidence 11126889999987765
No 336
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=30.85 E-value=1.5e+02 Score=36.64 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=10.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k 770 (800)
.|+++..++.++++++++|-.+
T Consensus 333 ~KR~k~~Erkee~~rk~deerk 354 (811)
T KOG4364|consen 333 QKRAKIMERKEEKSRKSDEERK 354 (811)
T ss_pred HHHHHHHHHHHHHhhhhhhhhh
Confidence 4444444555555554444333
No 337
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=30.84 E-value=4e+02 Score=27.68 Aligned_cols=10 Identities=40% Similarity=0.724 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 003718 764 TIEELNKEQE 773 (800)
Q Consensus 764 ~l~~~~k~~~ 773 (800)
+.+.+++...
T Consensus 97 ~~~~L~~~e~ 106 (201)
T PF12072_consen 97 RLEQLEKREE 106 (201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 338
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.80 E-value=2e+02 Score=29.70 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003718 744 LQEERERCRS-LEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (800)
Q Consensus 744 ~~~e~~~~k~-l~~~~~~~~~~l~~~~k~~~~li~~f~eer~ 784 (800)
++.++.+-+. |+.++++++.++|.++++-..=++-|.++|.
T Consensus 128 ~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~ 169 (200)
T cd07624 128 SVEELNKKRLELLKEVEKLQDKLECANADLKADLERWKQNKR 169 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544444 8888999999999888875555555555543
No 339
>PLN02320 seryl-tRNA synthetase
Probab=30.78 E-value=1.4e+02 Score=35.77 Aligned_cols=19 Identities=0% Similarity=0.246 Sum_probs=12.6
Q ss_pred hhhhhhhchHHHHHHHHhH
Q 003718 723 LGQLKQENHELKKRLEKKE 741 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~ 741 (800)
++.+++.-..+++.|.++-
T Consensus 69 ~k~ir~n~~~v~~~l~~R~ 87 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRN 87 (502)
T ss_pred HHHHHhCHHHHHHHHHhcC
Confidence 5666666666777777664
No 340
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.73 E-value=1.2e+02 Score=36.10 Aligned_cols=18 Identities=11% Similarity=0.267 Sum_probs=8.3
Q ss_pred hhhhhhhchHHHHHHHHh
Q 003718 723 LGQLKQENHELKKRLEKK 740 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~ 740 (800)
|.+-.....+|+++|..+
T Consensus 71 LteqQ~kasELEKqLaaL 88 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333445555555444
No 341
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=30.67 E-value=4.1e+02 Score=28.19 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=35.2
Q ss_pred hhhhhhhchHHHHHHHHhHHhH----HHHH----------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGEL----QEER----------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER 788 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~----~~e~----------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~ 788 (800)
|+.|.++...+...|+.+|..- ++|- ++.+..+.|.+.|++....+.++-+.|-+-+..++..+..
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~ 222 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK 222 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554442 1111 4444444444666666666666666666666666555544
No 342
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=30.62 E-value=1.1e+02 Score=31.86 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=10.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k 770 (800)
.+.+.+++++++++++|++..+
T Consensus 153 ~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 153 KKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555544433
No 343
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.49 E-value=4.9e+02 Score=29.63 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=21.8
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQ 763 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~k~l~~~~~~~~~ 763 (800)
...+...-++.---|+++|++|++.. .+-|.-|..|.++++
T Consensus 321 qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ek 362 (406)
T KOG3859|consen 321 QETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEK 362 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555566777777775554 344444444444444
No 344
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.43 E-value=2.4e+02 Score=37.18 Aligned_cols=73 Identities=21% Similarity=0.446 Sum_probs=40.7
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHhh
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI------DIFAEERDRREREEENLRK 795 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li------~~f~eer~~~~~e~~~l~~ 795 (800)
++..|++-..++.+|...+..+..-.+.++.+++++++++++++++.+....+- +.+.+.|..+....+.|+.
T Consensus 212 ~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~ 290 (1311)
T TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELEL 290 (1311)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566655555555557777777777777777776666544443 3333444444444444443
No 345
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=30.37 E-value=2.4e+02 Score=35.48 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=56.4
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE---QESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~---~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
=|..+..++.+++++|..+.++|..--..+-.|.+.++.+...|++.+.. ..+-|..+.||+.+-.-|.+.|+.+|.
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677788888999888888666666666777777777777665432 234567788999988888888888776
Q ss_pred c
Q 003718 799 I 799 (800)
Q Consensus 799 ~ 799 (800)
+
T Consensus 389 ~ 389 (775)
T PF10174_consen 389 K 389 (775)
T ss_pred H
Confidence 4
No 346
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.30 E-value=1.5e+02 Score=31.13 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=24.9
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
|..|++|..+|++++.+..++++- =+|-.+.+.+++.+ -++.+-+.---++|-|
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN---~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnL 103 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLEN---YRKRVQKEKEELLKYGNESLILEILPAVDNM 103 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 444555555555555554444322 22333344444444 4455555444455555
No 347
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.92 E-value=2.1e+02 Score=27.11 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.5
Q ss_pred hhhhhhhchHHHHHHHHhHHhH
Q 003718 723 LGQLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~ 744 (800)
+++|.+.-.....||..+|..+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l 58 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKL 58 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777789999998886
No 348
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.85 E-value=95 Score=34.71 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=35.7
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
++-++++..++.+.|...++.|+.-.++...|+.+|+.++.+++++.+++..|.+-
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666665555666667777777777777777776666544
No 349
>PRK14151 heat shock protein GrpE; Provisional
Probab=29.83 E-value=1.2e+02 Score=31.24 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=36.4
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFA 780 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f~ 780 (800)
.+.+-|..|++|..+|++++++..++++-= +|-.+.+.+++.+ -++.+-++---++|-|.
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~---rkR~~kE~e~~~~~a~~~~~~~LLpv~Dnle 84 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNV---RRRAEQDVEKAHKFALEKFAGDLLPVVDSLE 84 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 345557778888888888887776665432 2333444444444 55666666556666664
No 350
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.72 E-value=1.5e+02 Score=31.66 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=31.1
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFA 780 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f~ 780 (800)
+.-|..|+++..+|++++++..++++-= +|-.+.+.+++.+ -++.+-+..--++|-|.
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNy---RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLe 116 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNL---RKRIEREKADIIKFGSKQLITDLLPVADSLI 116 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3346667777777777777665554321 1223333344433 55555555555666664
No 351
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.71 E-value=3e+02 Score=32.34 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=18.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 751 CRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 751 ~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
.+.|+.+++.-+++|+++.....+|-+..+
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345555666677778777666555554443
No 352
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.70 E-value=57 Score=29.04 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=39.4
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 774 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~ 774 (800)
.|+.|+.+|...+-+|.+-+..-++-+ .-.|.....|++|+++++.+.++...
T Consensus 3 ~LEeIV~~LE~gel~Leesl~lyeeG~----~L~k~C~~~L~~aE~kI~~l~~e~~~ 55 (69)
T PRK14070 3 ELEEIVNRLENEDLPLEESIKLFERGV----ELYRKCKEILQQNRLKIIDVMKELEG 55 (69)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467889999999999988888776553 34455667788888888877666444
No 353
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=29.68 E-value=2e+02 Score=29.87 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=33.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 789 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e 789 (800)
..++.|+..++.+++++.......++||.|+.+-|.-.-.+
T Consensus 118 ~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~~~~~ 158 (170)
T PRK13923 118 EEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRMAILV 158 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 56778888888899999999999999999997666655333
No 354
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=29.67 E-value=2.6e+02 Score=31.01 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003718 745 QEERERCRSLEAQLKVMQQTI----------EELNKEQESLIDIFAEERDRREREEE 791 (800)
Q Consensus 745 ~~e~~~~k~l~~~~~~~~~~l----------~~~~k~~~~li~~f~eer~~~~~e~~ 791 (800)
.-...||++|.+.|+..|+=| ....+|...-+..|+|.|--++.+.+
T Consensus 106 s~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K 162 (268)
T PF11802_consen 106 STVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTK 162 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 344466666666664443332 33334444455567777655544443
No 355
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=29.66 E-value=3.9e+02 Score=26.48 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=23.5
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
.+|=++..+++..=.+..+..++.+++++++|.++.+|-..+++--
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A 97 (156)
T CHL00118 52 DERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQS 97 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433334444455555666666666666655555433
No 356
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.61 E-value=2.5e+02 Score=32.69 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=34.8
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSL--EAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l--~~~~~~~~~~l~~~~k~~~~l 775 (800)
|.+=|.+.-.||++|+.-=...|..|+..++-+..- |+|..+++-|-|-.++-|-+|
T Consensus 290 Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaL 348 (442)
T PF06637_consen 290 LRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLAL 348 (442)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344478888999999877777777776555333332 333444444555555555555
No 357
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=29.60 E-value=1.3e+02 Score=34.38 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 753 SLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 753 ~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
+|..|+.+++..+.++....+.+-+..
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~ 167 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAI 167 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHH
Confidence 455555555555555555544444433
No 358
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.49 E-value=1.6e+02 Score=34.21 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 003718 762 QQTIEELNKEQE 773 (800)
Q Consensus 762 ~~~l~~~~k~~~ 773 (800)
.++|+++.++++
T Consensus 79 ~~~~~~~~~~~~ 90 (425)
T PRK05431 79 KEEIKALEAELD 90 (425)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 359
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=29.36 E-value=64 Score=31.78 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=30.4
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
..-|..|.++..+|++++.++.++++.- .+.+..+.+++.+ -++.+-++--.++|.|
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~---~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l 74 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENY---RKRLEKEKEEAKKYALEKFLKDLLPVLDNL 74 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777666665422 3344444555544 3444444444444444
No 360
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.35 E-value=4.2e+02 Score=23.78 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhhh
Q 003718 773 ESLIDIFAEERDRREREEENLRKKI 797 (800)
Q Consensus 773 ~~li~~f~eer~~~~~e~~~l~~kl 797 (800)
+.-|+-+..+...-..+-++++.+|
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444443
No 361
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=29.28 E-value=6.6e+02 Score=28.70 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=46.6
Q ss_pred hhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHH-------HHHHHHHHHHH-HHHHHH---HHHHHHHHhhHHHH
Q 003718 721 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL-------KVMQQTIEELN-KEQESL---IDIFAEERDRRERE 789 (800)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~-------~~~~~~l~~~~-k~~~~l---i~~f~eer~~~~~e 789 (800)
.++.+=+-||+.++.|=-+|=+.|.+=|.|-+.=.++. .+++++||+-. +|-+.| -..+.++|.+|++|
T Consensus 125 k~~v~~q~ed~~~kqRNRRmFG~LlGTL~KFkqE~kr~t~rq~KraEieqKlEeq~~eE~e~l~~qe~~l~~~rr~r~~E 204 (340)
T KOG3756|consen 125 KDLVLDQNEDSKSKQRNRRMFGLLLGTLQKFKQESKRATERQVKRAEIEQKLEEQAEEEREQLEKQERELLEERRARQTE 204 (340)
T ss_pred hhhhhccCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555568999999998888888766664444333333 44555555422 222222 23567888888888
Q ss_pred HHHHhhh
Q 003718 790 EENLRKK 796 (800)
Q Consensus 790 ~~~l~~k 796 (800)
-..|.-|
T Consensus 205 lR~l~~k 211 (340)
T KOG3756|consen 205 LRLLEQK 211 (340)
T ss_pred HHHHHHH
Confidence 7666443
No 362
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.25 E-value=1.9e+02 Score=27.97 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=4.9
Q ss_pred HHHHHHHhHHhH
Q 003718 733 LKKRLEKKEGEL 744 (800)
Q Consensus 733 ~~~~~~~~~~~~ 744 (800)
|=.+|..+|+.+
T Consensus 6 lfd~l~~le~~l 17 (110)
T PRK13169 6 IFDALDDLEQNL 17 (110)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 363
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=29.21 E-value=2.2e+02 Score=34.81 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=16.5
Q ss_pred hhchHHHHHHHHhHHhHHHHH
Q 003718 728 QENHELKKRLEKKEGELQEER 748 (800)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~e~ 748 (800)
.||.+|+++|.+++++++...
T Consensus 121 ~e~~~lk~~lee~~~el~~~k 141 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLK 141 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhh
Confidence 488899999999998874443
No 364
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=29.20 E-value=4e+02 Score=26.49 Aligned_cols=29 Identities=7% Similarity=0.160 Sum_probs=13.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
+.+...++.+.+.+++|.++.+|-..+++
T Consensus 53 ~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14473 53 KVREQLANAKRDYEAELAKARQEAAKIVA 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555444443
No 365
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=29.15 E-value=1.4e+02 Score=34.50 Aligned_cols=28 Identities=39% Similarity=0.474 Sum_probs=18.0
Q ss_pred cccchhhhhhhhhchHHHHHHHHhHHhH
Q 003718 717 CSLGANLGQLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (800)
+.+..-+++|+++..+++++|.+.+..|
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l 357 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNL 357 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446777777777777777766664
No 366
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.10 E-value=1.3e+02 Score=35.85 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=9.1
Q ss_pred HHHHHHHhhhhc
Q 003718 787 EREEENLRKKIK 798 (800)
Q Consensus 787 ~~e~~~l~~kl~ 798 (800)
+.+||.||.||.
T Consensus 410 ~~~EE~Lr~Kld 421 (508)
T KOG3091|consen 410 TPDEEELRAKLD 421 (508)
T ss_pred CccHHHHHHHHH
Confidence 567888888874
No 367
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.98 E-value=2.7e+02 Score=34.10 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=27.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~ 785 (800)
..|+.|.+||.++|..+-.++++.-.|.+.+.-|.-.
T Consensus 160 sQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~ 196 (617)
T PF15070_consen 160 SQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHV 196 (617)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 4577888888888888888888887777666655443
No 368
>PRK14143 heat shock protein GrpE; Provisional
Probab=28.89 E-value=1.6e+02 Score=31.96 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=23.6
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
|..|++|..+|+.++++..+++.- -+|..+.+.+++.+ -++.+-++---++|-|
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN---~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnL 130 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDN---FRKRTSREQEDLRLQLKCNTLSEILPVVDNF 130 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444555555555555544443321 11222233344433 4444455544555555
No 369
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=28.84 E-value=1.8e+02 Score=32.02 Aligned_cols=50 Identities=34% Similarity=0.485 Sum_probs=37.2
Q ss_pred hHHHHHHHHhHHhH--------HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGEL--------QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 731 ~~~~~~~~~~~~~~--------~~e~----~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
-+|..||.++|-.| ..|+ +|.+.|..|++||+.=-|.++.-+.++-++++
T Consensus 157 LsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~ 218 (264)
T PF08687_consen 157 LSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILA 218 (264)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 57788888888876 1344 78888888888888866777777777776664
No 370
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=28.68 E-value=4.9e+02 Score=26.11 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=35.9
Q ss_pred hhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003718 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
+..+|++|+-.+......+..-...+..+..||..++...++-+.+|..|
T Consensus 17 ~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~L 66 (135)
T TIGR03495 17 QSQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQL 66 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35677788877777777776666777777777777777776666666666
No 371
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.59 E-value=2.3e+02 Score=29.78 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCCCCCCCCCc--ccCCCCCcccccccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH--HHHHHHH
Q 003718 695 RPFMPSQSKGS--EVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ--TIEELNK 770 (800)
Q Consensus 695 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~--~l~~~~k 770 (800)
.+.++--+|+- -++.|.--++.. +. +.+|..++ .+.++.+|.-.+-|...++++.+++. .+|++.+
T Consensus 54 ki~~K~YGKqKIY~a~QDqF~~~~~--ee-l~~ld~~i-------~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe 123 (201)
T KOG4603|consen 54 KIKEKMYGKQKIYFADQDQFDMVSD--EE-LQVLDGKI-------VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQE 123 (201)
T ss_pred chhHHhccceeeEeecHHhhcCCCh--HH-HHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 45555555554 236665444322 21 44444444 44444444444556666666655554 3344433
Q ss_pred H
Q 003718 771 E 771 (800)
Q Consensus 771 ~ 771 (800)
+
T Consensus 124 ~ 124 (201)
T KOG4603|consen 124 E 124 (201)
T ss_pred H
Confidence 3
No 372
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.56 E-value=4.9e+02 Score=27.06 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=15.7
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhc
Q 003718 776 IDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 776 i~~f~eer~~~~~e~~~l~~kl~ 798 (800)
...+++|-+--.+.-+-|+..|+
T Consensus 165 ~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577777777777777777665
No 373
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.47 E-value=2.3e+02 Score=36.66 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=17.9
Q ss_pred hhhhhhhhhchHHHHHHHHhHHh
Q 003718 721 ANLGQLKQENHELKKRLEKKEGE 743 (800)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~ 743 (800)
++||.|-.|..-||.+|.-..+-
T Consensus 404 ~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Confidence 57888889998888888765443
No 374
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.19 E-value=2.9e+02 Score=34.43 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=16.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
++.+.|.+..+.+..++|++...|+.|..
T Consensus 586 e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 586 EERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666666666654
No 375
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.06 E-value=2.1e+02 Score=27.42 Aligned_cols=50 Identities=36% Similarity=0.565 Sum_probs=0.0
Q ss_pred HHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 745 QEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 745 ~~e~-~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
.+++ +....|++++..+-.+++++.+.-..|+ ||=.+=..|-++||..|.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~----EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELL----EENARLRIENEHLRERLE 53 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 376
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.90 E-value=4.7e+02 Score=23.90 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=41.7
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM---QQTIEELNKEQESLIDIFAEERDRREREEEN 792 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~---~~~l~~~~k~~~~li~~f~eer~~~~~e~~~ 792 (800)
..+|.++|.|-..+-.-+..... -+.|++. ++..|+.++ ++++-+|...+..+..-+-||..|=-.|-++
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~-~~~e~e~--ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKH-QKDEYEH--KINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677766555433322222 2233322 266666554 4588899999999988888887775555443
No 377
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=27.78 E-value=1.6e+02 Score=32.57 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=10.7
Q ss_pred HHHHHHhhhhccccccccC
Q 003718 523 QMQKDYWNNNCHEIGYAPR 541 (800)
Q Consensus 523 q~l~~YW~~~~~~iGy~~~ 541 (800)
+.+-+||-+...+.++.+.
T Consensus 40 eglv~YWe~~~kk~~~~~~ 58 (264)
T PF07246_consen 40 EGLVYYWEEEMKKRRMMPG 58 (264)
T ss_pred hHHHHHHHHHHHHhccCCc
Confidence 3455788655555555544
No 378
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.57 E-value=2.5e+02 Score=33.16 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=8.4
Q ss_pred chhhhhhhhhchHHHH
Q 003718 720 GANLGQLKQENHELKK 735 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~ 735 (800)
.+-+.||..||.+|++
T Consensus 303 qmr~qqleeentelRs 318 (502)
T KOG0982|consen 303 QMRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 379
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.56 E-value=2.9e+02 Score=30.33 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=10.3
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHH
Q 003718 750 RCRSLEAQLKVMQQTIEELNKEQ 772 (800)
Q Consensus 750 ~~k~l~~~~~~~~~~l~~~~k~~ 772 (800)
++-.|-.+|+...+.|-++++.|
T Consensus 126 ~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 126 KNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHH
Confidence 34444444444444444444433
No 380
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=27.48 E-value=4.4e+02 Score=26.62 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
|.+|=.+..++|+.=-+.....++.+++++++|+++.++-..+++--.
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~ 98 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAK 98 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544544444433344555555566667777777666666655443
No 381
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.47 E-value=4.9e+02 Score=24.94 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
.+|=.+.+++|..=.+.+...++.+.+++++|+++.++-..+++
T Consensus 35 ~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~ 78 (140)
T PRK07353 35 EEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIA 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333344444555555666666666555544444
No 382
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.29 E-value=1.9e+02 Score=26.16 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.6
Q ss_pred cccchhhhhhhh-hchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 003718 717 CSLGANLGQLKQ-ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 766 (800)
Q Consensus 717 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~ 766 (800)
|.|..+|.+++. .+.+.|. +...-.+|+.-+.+||.+-..+.++.+.+|
T Consensus 6 P~i~~~l~~~~~d~~~~~kd-~~~~~~~lk~Klq~ar~~i~~lpgi~~s~e 55 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKD-LDTATGSLKHKLQKARAAIRELPGIDRSVE 55 (83)
T ss_pred chHHHHHHHHhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHhCCCccCCHH
Confidence 345667888777 4555543 555667788888999999988866444443
No 383
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.05 E-value=2.2e+02 Score=34.13 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 753 SLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (800)
Q Consensus 753 ~l~~~~~~~~~~l~~~~k~~~~li~~f~eer 783 (800)
.+.++++++.++|++..++|..+.+.++.=|
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567778888888888887776665433
No 384
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=26.79 E-value=2.3e+02 Score=26.81 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=31.3
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERER------CRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
|..++.++-+++.+-..+-.+++...++ +-.+..+++.+++.++...+.=.-+-++|+
T Consensus 19 L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 19 LSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444322211 233556667777777776666666666665
No 385
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.70 E-value=2.7e+02 Score=29.99 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhHHH
Q 003718 773 ESLIDIFAEERDRRER 788 (800)
Q Consensus 773 ~~li~~f~eer~~~~~ 788 (800)
|++|----+||+++..
T Consensus 66 E~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 66 ENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455555443
No 386
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.70 E-value=6.6e+02 Score=28.33 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=36.6
Q ss_pred hhhhhhhhchHHHHHHHHh-HHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 722 NLGQLKQENHELKKRLEKK-EGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
.++.=++.|..---|..++ .++.+.=++.|+-|+.|-+++..|..++.+|-.-|.++|-|-+..|
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444433343222 2222223355666777777777777777777777777777665544
No 387
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=26.59 E-value=22 Score=44.58 Aligned_cols=86 Identities=29% Similarity=0.400 Sum_probs=0.0
Q ss_pred cCCCCCcccccccchhhhhhhhhchHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 707 VNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~k~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
++.-..-+++. -....+|.....+|.-||.-++++|..|+.- .+-|..+|+++...|++..-.-.+ -
T Consensus 20 l~~~~~~~e~e--~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~a----q 93 (859)
T PF01576_consen 20 LSQLNSKLEDE--QALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQA----Q 93 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHh----h
Confidence 33333445554 3446778888999999999999999888833 345666666666666665544333 3
Q ss_pred HHHHhhHHHHHHHHhhhhc
Q 003718 780 AEERDRREREEENLRKKIK 798 (800)
Q Consensus 780 ~eer~~~~~e~~~l~~kl~ 798 (800)
.|-+.+|+.|-..||+.|+
T Consensus 94 ~E~~kkrE~El~~Lrr~LE 112 (859)
T PF01576_consen 94 IELNKKREAELAKLRRDLE 112 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4568889999988888774
No 388
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=26.51 E-value=3.5e+02 Score=30.20 Aligned_cols=46 Identities=39% Similarity=0.585 Sum_probs=36.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
.++|.|+.+-....++-|..|+ +||+ .+|||..++.|-+.+++|+.
T Consensus 251 Kk~kklEKE~~~~k~k~e~~n~---~l~~-m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 251 KKIKKLEKENQTWKSKWEKSNK---ALIE-MAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887776 4554 57999999999999998864
No 389
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=26.44 E-value=4.3e+02 Score=27.02 Aligned_cols=12 Identities=8% Similarity=0.302 Sum_probs=5.9
Q ss_pred HHHHHHHhHHhH
Q 003718 733 LKKRLEKKEGEL 744 (800)
Q Consensus 733 ~~~~~~~~~~~~ 744 (800)
|.+|-.+.+++|
T Consensus 39 Le~R~~~I~~~L 50 (155)
T PRK06569 39 FNNRQTNIQDNI 50 (155)
T ss_pred HHHHHHHHHhHH
Confidence 344555555554
No 390
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=26.40 E-value=5e+02 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=15.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
..+...++.+++++++|+++.+|...+++
T Consensus 49 ~~~~~a~~~~~e~~~~l~~a~~ea~~i~~ 77 (156)
T PRK05759 49 RAKKELELAQAKYEAQLAEARAEAAEIIE 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566655555554443
No 391
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.24 E-value=5.9e+02 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=17.3
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQ 745 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (800)
|..|..+-++|...|+..|..+...+.
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~ 44 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVS 44 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777766666653
No 392
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.23 E-value=3.1e+02 Score=30.79 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=6.5
Q ss_pred hhHHHHHHhhhc
Q 003718 385 HSLRSYASILYL 396 (800)
Q Consensus 385 ~SLRaYLSILYL 396 (800)
.||..+|.+.-+
T Consensus 10 isL~dFL~~t~I 21 (312)
T smart00787 10 ISLQDFLNMTGI 21 (312)
T ss_pred ccHHHHHHHcCc
Confidence 455555555444
No 393
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.02 E-value=1.6e+02 Score=29.21 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=18.4
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
.|++-+.+.|..++++.+..++|+...+.+++++++.
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444444444433
No 394
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.91 E-value=53 Score=38.90 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcc
Q 003718 757 QLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKI 799 (800)
Q Consensus 757 ~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~~ 799 (800)
|+|++++||++|+++|+.|-+- -..-|+..+-++|++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~------v~k~e~~s~~d~lk~ 68 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR------VDKVEKHSAGDNLKF 68 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc------cchhhHhhhcCcEEE
Confidence 7777888888888777733221 233456666677664
No 395
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.72 E-value=1.8e+02 Score=30.84 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=40.0
Q ss_pred ccccccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003718 714 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFA 780 (800)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f~ 780 (800)
.+...+..-|..|++|..+|++++++..++++-= +|-++.+.+++.+ -++.+-+..--++|-|-
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~---RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLe 77 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENT---KRRAEREMNDARAYAIQKFARDLLGAADNLG 77 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhhHH
Confidence 3345556668888888888888888877766432 2333444444444 56666666666666663
No 396
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=25.69 E-value=4.4e+02 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 772 QESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 772 ~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
..++-.-|..||.+|..=.+.|..+|+
T Consensus 58 ~~~i~~q~~~e~~~r~e~k~~l~~ql~ 84 (131)
T PF11068_consen 58 IQSIQQQFEQEKQERLEQKNQLLQQLE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456668899999999888888877653
No 397
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.63 E-value=1.4e+02 Score=34.12 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=0.0
Q ss_pred hhhhhchHHHHHHHHhHHhHH-HHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003718 725 QLKQENHELKKRLEKKEGELQ-EERERCRSLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~-~e~~~~k~l~~~~~~~~~~l~~~~k~~~ 773 (800)
.||+||++||-.+.++|+++. +-..+.-.+-+. .+++-.+-+||-|+
T Consensus 43 ~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv--~~d~i~Kimnk~Re 90 (420)
T PF07407_consen 43 SLKKENNDLKIEVERLENEMLRSHVCEDVETNDV--IYDKIVKIMNKMRE 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH--HHHHHHHHHHHHhh
No 398
>PRK14139 heat shock protein GrpE; Provisional
Probab=25.61 E-value=2e+02 Score=30.02 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=30.1
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
.+-|..|++|..+|++++++...+++-= +|-++.+.+++.+ -++.+-++.--++|-|
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~---rKR~~kE~e~~~~~a~~~~~~~LLpv~DnL 95 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENV---RRRAQEDVAKAHKFAIESFAESLLPVKDSL 95 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 3346666666667777666665554322 2333344444444 5555555555555555
No 399
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=25.57 E-value=1.1e+02 Score=30.01 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003718 764 TIEELNKEQESLIDIFAEERDRREREE 790 (800)
Q Consensus 764 ~l~~~~k~~~~li~~f~eer~~~~~e~ 790 (800)
+|+-|..||+.--+-+.+=|.++||||
T Consensus 79 tL~RLEeEq~eF~~Fl~rLR~AKDk~E 105 (115)
T PF11014_consen 79 TLRRLEEEQREFEDFLERLRRAKDKEE 105 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444455566666666777788888877
No 400
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=25.42 E-value=3.9e+02 Score=27.66 Aligned_cols=51 Identities=27% Similarity=0.225 Sum_probs=36.3
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~ 773 (800)
+|=.|.....+|+-++..++.+|+.++.|. .+++++.+++...|+.-|.-|
T Consensus 16 vl~~l~~~Ir~lq~~~e~k~~~l~e~l~~~-e~~r~v~ea~~~ke~~~Kl~E 66 (175)
T COG4741 16 VLYLLRAYIRSLQGKVESKARELEETLQKA-ERERLVNEAQARKEEEWKLKE 66 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999988888887777665 667777777665555555444
No 401
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.40 E-value=3.5e+02 Score=23.74 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=14.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHH
Q 003718 745 QEERERCRSLEAQLKVMQQTIEEL 768 (800)
Q Consensus 745 ~~e~~~~k~l~~~~~~~~~~l~~~ 768 (800)
+.--.+|+.|+.+++.++.++|++
T Consensus 35 qeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 35 QEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333356666777776666666665
No 402
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.39 E-value=2.8e+02 Score=37.99 Aligned_cols=73 Identities=33% Similarity=0.466 Sum_probs=0.0
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHhhhhc
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE---REEENLRKKIK 798 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~---~e~~~l~~kl~ 798 (800)
|+.|..+...||..+..+..++ ++-..++.-+|++++.+++++.++-..++..++.-|...+ ++..+|-++|+
T Consensus 807 i~eL~~el~~lk~klq~~~~~~---r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 807 IKELERELQKLKKKLQEKSSDL---RELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLK 882 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 403
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=25.37 E-value=1.6e+02 Score=35.66 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=18.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 750 ~~k~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
+-..|..++++++.+|+++-.+=+.|.+.+
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665544
No 404
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.25 E-value=1.2e+02 Score=27.41 Aligned_cols=51 Identities=12% Similarity=0.226 Sum_probs=36.7
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ 772 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~ 772 (800)
.|++|+.+|...+-.|.+-|..-++-+ .-.|....+|++|++++..+..++
T Consensus 14 ~LE~IV~~LE~~~l~Leesl~~ye~G~----~L~k~c~~~L~~ae~kv~~l~~~~ 64 (75)
T PRK14064 14 ELETIVEALENGSASLEDSLDMYQKGI----ELTKLCQDKLQSAEKRMAKVVTDA 64 (75)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777777777777776655433 456677788999999998776543
No 405
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.15 E-value=1.3e+02 Score=34.34 Aligned_cols=45 Identities=31% Similarity=0.561 Sum_probs=23.9
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k 770 (800)
-|.+|.++..+|+++|.+.. +-..+.+.|+.|++-++++++++..
T Consensus 250 ~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 250 KLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666665544 3334444555555555555555443
No 406
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=24.96 E-value=4.1e+02 Score=29.27 Aligned_cols=27 Identities=4% Similarity=-0.017 Sum_probs=13.1
Q ss_pred CcccccccchhhhhhhhhchHHHHHHH
Q 003718 712 HFLSDCSLGANLGQLKQENHELKKRLE 738 (800)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (800)
-.|++..+..-+.+++.+....+..|.
T Consensus 77 ~~ld~~~~~~~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 77 FRIDPRPYELTVAQAQADLALADAQIM 103 (346)
T ss_pred EEECcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444445555555444444433
No 407
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=24.96 E-value=2.9e+02 Score=29.63 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 003718 771 EQESLIDIFAEERDRRER 788 (800)
Q Consensus 771 ~~~~li~~f~eer~~~~~ 788 (800)
+..+|-+++.|||.|.-.
T Consensus 172 ~~~~lr~al~EERrRyc~ 189 (223)
T cd07605 172 VSQGLRDALLEERRRYCF 189 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456888999999999753
No 408
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=24.87 E-value=1.2e+02 Score=26.65 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=36.2
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~ 771 (800)
.|++|+++|....-+|.+-+..-++-+ .--|.....|++|++++..++.+
T Consensus 9 ~Le~Iv~~LE~~~l~Leesl~lyeeG~----~L~k~c~~~L~~ae~kv~~l~~~ 58 (67)
T TIGR01280 9 ELEQIVQKLESGDLALEEALNLFERGM----ALARRCEKKLAQAEQRVRKLLKE 58 (67)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888887777665543 34455667888899998887654
No 409
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.73 E-value=5.1e+02 Score=26.33 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=22.5
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
.+|=.....+|+.=-+.....+..+.+++++|+++.++...+++-
T Consensus 54 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~ 98 (184)
T CHL00019 54 DNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVN 98 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333444445555566666666666665555543
No 410
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=24.61 E-value=2.5e+02 Score=35.31 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003718 760 VMQQTIEELNKEQESLIDIFAEERDRREREE 790 (800)
Q Consensus 760 ~~~~~l~~~~k~~~~li~~f~eer~~~~~e~ 790 (800)
.+.-+||+++.+-+-++.-+.+.|.+-++|.
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~ 463 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQRERAEKER 463 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999888877554
No 411
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=24.60 E-value=4.6e+02 Score=26.66 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 003718 759 KVMQQTIEELNKEQES 774 (800)
Q Consensus 759 ~~~~~~l~~~~k~~~~ 774 (800)
++.+.+|.++.+|-..
T Consensus 59 ~e~e~~L~~Ar~EA~~ 74 (154)
T PRK06568 59 EQTNAQIKKLETLRSQ 74 (154)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445444444444
No 412
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=24.50 E-value=3.2e+02 Score=30.64 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=5.9
Q ss_pred hhhhhhhchHHHH
Q 003718 723 LGQLKQENHELKK 735 (800)
Q Consensus 723 ~~~~~~~~~~~~~ 735 (800)
+..+++|.++|.+
T Consensus 8 ~~~~~~~~r~l~~ 20 (378)
T TIGR01554 8 REEIVAEIRSLLD 20 (378)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444444
No 413
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.37 E-value=2.1e+02 Score=31.13 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=4.2
Q ss_pred HHHHHHhHHhH
Q 003718 734 KKRLEKKEGEL 744 (800)
Q Consensus 734 ~~~~~~~~~~~ 744 (800)
|.|...+|+++
T Consensus 92 R~Rn~ELE~el 102 (248)
T PF08172_consen 92 RQRNAELEEEL 102 (248)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 414
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=24.36 E-value=4.3e+02 Score=28.94 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 003718 512 TVLARLEARLIQMQKDYWNNNC 533 (800)
Q Consensus 512 ~ly~rLe~~L~q~l~~YW~~~~ 533 (800)
.-..+|...|.....+||..|.
T Consensus 96 ~~~~~L~~~i~~~~~~~~~~N~ 117 (297)
T PF02841_consen 96 KYQKKLMEQIEKKFEEFCKQNE 117 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888877778876443
No 415
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.19 E-value=4.3e+02 Score=23.15 Aligned_cols=51 Identities=14% Similarity=0.361 Sum_probs=24.7
Q ss_pred hhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003718 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
.++++...++.|++..++.+..==.....++.+++++..+|+++..-+--+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444432111122334455566666666665554433
No 416
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=24.15 E-value=2.3e+02 Score=30.07 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=23.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESL-------------IDIFAEERDRRERE 789 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~l-------------i~~f~eer~~~~~e 789 (800)
+.+..|....+.++++.+++..+-.+| .|.+..||.++-.|
T Consensus 109 een~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 109 EENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 555555566666666666664443333 25666777766554
No 417
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.13 E-value=2.4e+02 Score=27.77 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=14.2
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQ 745 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~ 745 (800)
-+..|+++...|.+.+..+++.+.
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~~ 35 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERLL 35 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665555544
No 418
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.10 E-value=5.1e+02 Score=23.01 Aligned_cols=54 Identities=30% Similarity=0.338 Sum_probs=33.6
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
|++.+..|+..+..+-.++..-+..+ ..|+ -+...+|.+|-..+.++..|.++|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER---d~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRER---DSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888888877664 4444 234445555555555555444444
No 419
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.84 E-value=2.7e+02 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.546 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 768 LNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 768 ~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
|..|+++-...|.|+ .++.|||..|.||+
T Consensus 92 mQEE~dakA~~~kEK--q~q~EEEKRrqkie 120 (190)
T PF06936_consen 92 MQEELDAKAEEYKEK--QKQEEEEKRRQKIE 120 (190)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 444444545555443 36677777777775
No 420
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.78 E-value=3.6e+02 Score=32.17 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=42.3
Q ss_pred hhhhhhhhchHHHHHHHHhHHh-H---------HHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGE-L---------QEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 790 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~-~---------~~e~-~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~ 790 (800)
-+..|..|...||+-|...... . ..++ ..+..++..|++++++|+.|+++-++.-++ -..-..---+.
T Consensus 173 kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~L-e~kL~~a~~~l 251 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDL-ESKLAEASAEL 251 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4677888888888888765432 1 1111 445566667777777777777766433322 22222222344
Q ss_pred HHHhhhhc
Q 003718 791 ENLRKKIK 798 (800)
Q Consensus 791 ~~l~~kl~ 798 (800)
.+|+..|+
T Consensus 252 ~~Lq~El~ 259 (522)
T PF05701_consen 252 ESLQAELE 259 (522)
T ss_pred HHHHHHHH
Confidence 44554443
No 421
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=23.70 E-value=1.4e+02 Score=28.81 Aligned_cols=37 Identities=41% Similarity=0.436 Sum_probs=23.5
Q ss_pred hhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHH
Q 003718 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQ 762 (800)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~ 762 (800)
|++|+.+||+-|.++++=+++=.+|-.-++.=|.+++
T Consensus 40 lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~ 76 (106)
T PF11594_consen 40 LKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQ 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998888888777554444433333343333
No 422
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.62 E-value=4.9e+02 Score=28.14 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=21.2
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 735 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 735 ~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
+|=++.+.+|+.=-++....+..+++++++|+++.++...+++--
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 80 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA 80 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332223334444455555566666665555555433
No 423
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.51 E-value=6.4e+02 Score=27.11 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc
Q 003718 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 754 l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l~~kl~ 798 (800)
++...++|+.+|+++..+++.+-+-+..-.-.|=-||+---+|++
T Consensus 104 ~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIR 148 (207)
T PF05546_consen 104 NEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIR 148 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455568888899999999998888888888888888887777654
No 424
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.49 E-value=4.3e+02 Score=32.68 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=32.9
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhh---------cHHHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCR---------SLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k---------~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
.++-|.++..+|+.+|...|..|+.=+.+++ .+-+++.++++|+.++......|
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888755443332 23344555555555555444333
No 425
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.48 E-value=2.1e+02 Score=35.06 Aligned_cols=7 Identities=14% Similarity=0.577 Sum_probs=2.7
Q ss_pred hhhhhhh
Q 003718 723 LGQLKQE 729 (800)
Q Consensus 723 ~~~~~~~ 729 (800)
|..|+.+
T Consensus 290 i~~L~~~ 296 (754)
T TIGR01005 290 IQRLRER 296 (754)
T ss_pred HHHHHHH
Confidence 4433333
No 426
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.47 E-value=2.4e+02 Score=29.77 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=31.2
Q ss_pred chhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
..-|..|++++.+|++++++..++++-= +|-.+.+.+++.+ -++.+-++.--.+|-|
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~---rkR~~kE~e~~~~~a~~~~~~~LLpV~DnL 102 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNM---QNRYAKERAQLIKYESQSLAKDVLPAMDNL 102 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 3346667777777777777666655332 2223333344443 5555555555556655
No 427
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.45 E-value=5.8e+02 Score=25.72 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=25.5
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
.+|=.+..+++..=-+.++..++.+++++++|+++.+|-..+++-
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~ 92 (175)
T PRK14472 48 EEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE 92 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333444555556667777777777776666654
No 428
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.44 E-value=2.3e+02 Score=29.23 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=33.6
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
+.+-|..|++|..+|++++.+..++++-=+ |-++.+.+++.+ -++.+-++.--++|-|
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~r---kR~~kE~e~~~~~a~~~~~~~lLpv~Dnl 81 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQR---KRIARDVEQARKFANEKLLGELLPVFDSL 81 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 555677888888888888887766653322 223334444443 4444555444455555
No 429
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=23.29 E-value=3e+02 Score=30.69 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=28.6
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003718 732 ELKKRLEKKEGELQEERERCRSLEAQLKVM-QQTIEELNKEQESLIDIFAEERDRREREEE 791 (800)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~-~~~l~~~~k~~~~li~~f~eer~~~~~e~~ 791 (800)
+.+++..+.-+....++.|-..- ++.|++ +++-|...+|.+.++.-++-|.-|+-.|.|
T Consensus 255 e~~~K~~k~R~~~~~~~~K~~~~-~r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~eeKe 314 (321)
T PF07946_consen 255 EAKKKAKKNREEEEEKILKEAHQ-ERQEEAQEKKEEKKREERERKLSKLSPEEQRKYEEKE 314 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33444444444333333333222 233444 345555566677777777666555544443
No 430
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=23.24 E-value=3.2e+02 Score=33.76 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=46.9
Q ss_pred hhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHH
Q 003718 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESL----------IDIFAEERDRREREEENL 793 (800)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~l----------i~~f~eer~~~~~e~~~l 793 (800)
.|--|.++||=+|-.+|.+-..--+|.+.-+..++++.+ +.+++.+||-.- +--+.|-|...+.|++.|
T Consensus 178 DLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl 257 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRL 257 (861)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHH
Confidence 345567777777777765533222666666666677765 677777766432 344667777777788777
Q ss_pred hhhh
Q 003718 794 RKKI 797 (800)
Q Consensus 794 ~~kl 797 (800)
-.+|
T Consensus 258 ~~~l 261 (861)
T KOG1899|consen 258 LRTL 261 (861)
T ss_pred HHHH
Confidence 6665
No 431
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.13 E-value=1.4e+02 Score=27.00 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=34.2
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~ 771 (800)
.|++|+++|....-.|.+-|..-++=+ .-.|....+|++|++++..+..+
T Consensus 14 ~Le~IV~~LE~gdl~Leesl~lyeeG~----~L~k~C~~~L~~ae~kv~~l~~~ 63 (76)
T PRK14068 14 ELEQIVQKLDNETVSLEESLDLYQRGM----KLSAACDTTLKNAEKKVNDLIKE 63 (76)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777666655432 44566778888999888876543
No 432
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=22.85 E-value=92 Score=31.62 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=28.0
Q ss_pred hhhhhhhhchHHHHHHHHh--HHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKK--EGELQEERERCRSLEAQLKVMQQTIEE 767 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~k~l~~~~~~~~~~l~~ 767 (800)
=+++|++|...|++++..- .++|+.-++....++.|+.+++++|+.
T Consensus 35 G~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 35 GLKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRT 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 3788899998888766433 234444344445555666666665554
No 433
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=22.82 E-value=5.5e+02 Score=24.90 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=25.1
Q ss_pred hHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003718 731 HELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 790 (800)
Q Consensus 731 ~~~~~~~~~~~~~~---~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~ 790 (800)
..|.+++.+.-+-| ..-+.+-+.--..+.+..+ +++-..--+-|||.|+++|+
T Consensus 48 k~L~eki~~Fh~ILDd~~~~l~~sk~~v~~m~e~~q-------~~ee~K~keE~E~~rkE~e~ 103 (105)
T PF11214_consen 48 KQLSEKIHKFHSILDDTESKLNDSKWYVDTMVELKQ-------KQEEEKIKEEEERKRKEEEE 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 45666666655433 2222333333333333333 33333334457788875554
No 434
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.80 E-value=4.4e+02 Score=31.01 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003718 757 QLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (800)
Q Consensus 757 ~~~~~~~~l~~~~k~~~~li~~f~eer~~~~ 787 (800)
+++++.++=..|.++..++...-+.+|.+++
T Consensus 225 ~l~eL~~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 225 KLEELRANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666555555555554
No 435
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.72 E-value=1.2e+02 Score=27.43 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=34.0
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~ 771 (800)
.|+.|+.+|....-+|.+-+...++-+ .-.|....+|++|+++++.+...
T Consensus 18 ~LEeIv~~LE~~~l~Lees~~lyeeg~----~L~k~C~~~L~~ae~ki~~l~~~ 67 (80)
T PRK00977 18 ELEEIVTRLESGDLPLEESLAAFERGV----ALARQCQKKLQQAEQRVEKLLDE 67 (80)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777766666554432 44566677888999988887654
No 436
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.69 E-value=4.6e+02 Score=23.36 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=24.9
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f 779 (800)
.++.+||..+|..+---=+-...|-+-+-.-+++|..+.++...|.+-+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777766533223333344444444455555555555554443
No 437
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.67 E-value=7.2e+02 Score=26.39 Aligned_cols=10 Identities=40% Similarity=0.401 Sum_probs=4.0
Q ss_pred HhhhcHHHHH
Q 003718 749 ERCRSLEAQL 758 (800)
Q Consensus 749 ~~~k~l~~~~ 758 (800)
.++|+|+...
T Consensus 155 ~~lk~lE~~~ 164 (237)
T PF00261_consen 155 NNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 3444444333
No 438
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.59 E-value=2.8e+02 Score=29.54 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=18.7
Q ss_pred hchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003718 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (800)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~ 763 (800)
+..+|+++|.++++++..-.++..-+.+.+++..+
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RK 48 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKR 48 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444555555555555555
No 439
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=22.58 E-value=3.7e+02 Score=31.04 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHH
Q 003718 754 LEAQLKVMQQTIE-------ELNKEQESLIDIFAEERDRRERE 789 (800)
Q Consensus 754 l~~~~~~~~~~l~-------~~~k~~~~li~~f~eer~~~~~e 789 (800)
|+.+-+.++|||| .+.++|..|--.+.|||.|+.|=
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqi 186 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQI 186 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 46677888888889999998763
No 440
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.52 E-value=4.1e+02 Score=35.95 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=18.0
Q ss_pred Ccccchhh---hHHHHHHHHHHHHHHHHHhh
Q 003718 503 HDKQGFER---TTVLARLEARLIQMQKDYWN 530 (800)
Q Consensus 503 HnKQDFe~---t~ly~rLe~~L~q~l~~YW~ 530 (800)
.++..|.+ +.+|.++...+.+-+.+|--
T Consensus 192 ~dR~kF~kLf~taiy~~i~~~i~~fl~~yll 222 (1486)
T PRK04863 192 SDRSKFYRLIEASLYGGISSAITRSLRDYLL 222 (1486)
T ss_pred chHHHHHHHHHHHHHhhHHHhHHHHHHHHcC
Confidence 55555654 45677777777777777763
No 441
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.52 E-value=2.5e+02 Score=35.42 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=6.4
Q ss_pred CCcceeeeeec
Q 003718 486 DGRGVIGVLEA 496 (800)
Q Consensus 486 ~GrGVIGVlEa 496 (800)
.|.|+|.||+-
T Consensus 689 qCsGm~SVL~L 699 (1259)
T KOG0163|consen 689 QCSGMISVLEL 699 (1259)
T ss_pred hhccHHHHHHH
Confidence 45666666553
No 442
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.45 E-value=2.6e+02 Score=29.51 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=11.2
Q ss_pred hhhhhhhhchHHHHHHHHhHHhH
Q 003718 722 NLGQLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~ 744 (800)
-|..|+++..+|++|+++..+++
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~ 70 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEM 70 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444443
No 443
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.41 E-value=4.5e+02 Score=27.97 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 003718 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ 772 (800)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~ 772 (800)
.+-+++.++..|+.=..|-.+|-+..+..+.-.|+-.+.|
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~ 118 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERT 118 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHH
Confidence 3334444444443333333344444444444333333333
No 444
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.38 E-value=3.2e+02 Score=35.54 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=26.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhh-cHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCR-SLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k-~l~~~~~~~~~~l~~~~k 770 (800)
.|+++|++++|....+|+...+ .++.|+++-+-.||.+.|
T Consensus 596 ~eme~~~~e~e~qy~~er~~a~~~~eqq~~~~~s~lE~~~k 636 (1221)
T KOG0245|consen 596 AEMEKRLQEAENQYRQEREEADLLLEQQRLDYESKLESEQK 636 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHH
Confidence 4588999999999988884443 445555544445554444
No 445
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=22.28 E-value=92 Score=36.82 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=48.0
Q ss_pred ccHHHHHHHHhhcchhhhhc--CCceeEEEEEEccCCCceeEEEEECCC---CCCHHhHHHhhhcCcccccc--------
Q 003718 151 KWALGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGG---GMNPDKMRHCMSLGYSAKSK-------- 217 (800)
Q Consensus 151 kwpF~AIAELIDNAiDA~~~--gAt~V~Idi~~~~~~g~~~L~I~DNG~---GM~~eeL~~~LsfG~SsK~~-------- 217 (800)
..|..|++|+|-||+=.-+= .+..|+|+++.+ .|.|.-.|. ||+++++.+. .|..+.
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iydD------RieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA~~l~ 338 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIYDD------RIEITNPGGLPPGITPEDLLKG----RSKSRNPVLAKVLR 338 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEECC------eEEEECCCCCCCCCChhHcccC----CCcccCHHHHHHHH
Confidence 35778999999999855211 234799999764 488888776 8888888752 222211
Q ss_pred CCcccCccccccc
Q 003718 218 AANTIGQYGNGFK 230 (800)
Q Consensus 218 ~~~~IGrfG~GfK 230 (800)
....|-++|-|+.
T Consensus 339 ~~~liE~~GSGi~ 351 (467)
T COG2865 339 DMGLIEERGSGIR 351 (467)
T ss_pred HhhhHHHhCccHH
Confidence 1346778999986
No 446
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.15 E-value=1.1e+02 Score=27.87 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=34.1
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k 770 (800)
.|+.|+++|....-.|.+-+...++-+ ...|....+|+.|+++++.+..
T Consensus 15 ~LEeIV~~LE~~~l~Lees~~lyeeG~----~L~k~C~~~L~~ae~kI~~l~~ 63 (80)
T PRK14067 15 RLQEIVDALEGGDLPLEESVALYKEGL----GLARACREQLAKARNEIRLFTE 63 (80)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777777777777766655442 3455667788899998887764
No 447
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.93 E-value=5.4e+02 Score=30.77 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=19.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~ 786 (800)
..+..+.++++.++..+.++..+...|---+.++|...
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~ 97 (475)
T PRK10361 60 AECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544444444444444
No 448
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=21.93 E-value=5e+02 Score=31.61 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=24.3
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHH
Q 003718 746 EERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENL 793 (800)
Q Consensus 746 ~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l---i~~f~eer~~~~~e~~~l 793 (800)
+...-++.|.++++++++.+++..+.++++ .+-+.++...|.+.++.|
T Consensus 100 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l 150 (779)
T PRK11091 100 RDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIEL 150 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666666666655444333 344444444444433333
No 449
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.93 E-value=5.9e+02 Score=27.46 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003718 759 KVMQQTIEELNKEQESLI 776 (800)
Q Consensus 759 ~~~~~~l~~~~k~~~~li 776 (800)
+.+++++...++|+++|+
T Consensus 150 ek~~k~~~~nk~eee~~~ 167 (216)
T KOG4031|consen 150 EKLEKTKANNKAEEEALV 167 (216)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 334444444455555443
No 450
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=21.93 E-value=4.2e+02 Score=32.39 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhhh----hhchHHHHHHHHhHHhH---HHHHHhhhcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003718 722 NLGQLK----QENHELKKRLEKKEGEL---QEERERCRSLEAQL-KVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (800)
Q Consensus 722 ~~~~~~----~~~~~~~~~~~~~~~~~---~~e~~~~k~l~~~~-~~~~~~l~~~~k~~~~li~~f~eer~~~~~e~~~l 793 (800)
.|.+++ .+...+.||+..+...+ ..+.++.-.|.+.| +++.+|.|.+--.-..+-+++.|++++.. |.++-
T Consensus 404 ~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~-~~e~~ 482 (607)
T KOG0240|consen 404 SITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQE-ENEAA 482 (607)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred hhhhc
Q 003718 794 RKKIK 798 (800)
Q Consensus 794 ~~kl~ 798 (800)
..+++
T Consensus 483 ~~e~~ 487 (607)
T KOG0240|consen 483 KDEVK 487 (607)
T ss_pred HHHHH
No 451
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.84 E-value=2.9e+02 Score=26.40 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=34.8
Q ss_pred HHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 733 LKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (800)
Q Consensus 733 ~~~~~~~~~~~~---~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~ 780 (800)
|-.||..|..+| ++=++---.|..||+.+..|++.|+.-=|+.-.+++
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~ 52 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLA 52 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 345666665554 333366777888999999999999998888777664
No 452
>PRK14160 heat shock protein GrpE; Provisional
Probab=21.80 E-value=4.7e+02 Score=27.99 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~ 763 (800)
.+.+|++++..|++++.++++.+..-.++..-+.+.+++..+
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555544333444444444444433
No 453
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=21.71 E-value=5.7e+02 Score=27.29 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=24.9
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
|.+|=++.+++|+.=-+..+..+..+++++++|+++.+|...+++
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 34 MDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544444444433344455555666666666666666665554
No 454
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.71 E-value=3.8e+02 Score=23.46 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
+.+||..+|..+---=+-...|-..+-.-+++|..+.++-..|.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666554332233333444444444444444444444433
No 455
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=21.66 E-value=1.7e+02 Score=35.07 Aligned_cols=139 Identities=20% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCccccCCCCCCcccCcccccccCCccccCCccccCCCCCCCCCCCcccccccccccCCCCCcccccccccccCCCCCCC
Q 003718 592 LPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHR 671 (800)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (800)
.+...+.+++.....++.-...++++....+--...-.+.+..+..-+ +++++..+..|...+...
T Consensus 509 ~ss~~k~stk~n~t~s~~~~~~~~~~~ps~~~~~~r~~t~a~~~~eie--------------~q~lkvle~YCt~~~~qq 574 (661)
T KOG2070|consen 509 LSSRNKRSTKSNKTMSKLLPKRKPERKPSDEEFASRKSTAALEEDEIE--------------AQILKVLEAYCTSAKTQQ 574 (661)
T ss_pred CcccccccccCcccHhhcCcccCCCCCCchhhhhhhccccccccccch--------------hHHHHHHHHHhhcCCCcC
Q ss_pred CCCCcccccccccccCCCCCCCCCCCCCCCCCCccc------CCCCCcccccccchhhhhhhhhchHHHHHHHHhHHhHH
Q 003718 672 THPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEV------NYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQ 745 (800)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (800)
+.-++.... +..-.--..+..+ +.++..|.+.+|-..+-+||+|.++|+.-.+|+...+.
T Consensus 575 t~~~s~~~~--------------~~p~~l~~e~eki~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~le 640 (661)
T KOG2070|consen 575 TLNSSNRKY--------------SQPQVLLPEEEKILMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLE 640 (661)
T ss_pred Ccccchhhc--------------ccceehhhhHHHHHHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhcHHHHH
Q 003718 746 EERERCRSLEAQL 758 (800)
Q Consensus 746 ~e~~~~k~l~~~~ 758 (800)
.|+.-++-|+.-|
T Consensus 641 eEqkaRrdLe~ll 653 (661)
T KOG2070|consen 641 EEQKARRDLEKLL 653 (661)
T ss_pred HHHHHHHHHHHHH
No 456
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.49 E-value=6.5e+02 Score=25.57 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=29.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~ 778 (800)
.-|.+|=.+...+++.=-+.+...++.+.+.+++|+++.+|-..+|+-
T Consensus 54 ~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 54 GMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444555556666677777777777766666654
No 457
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.48 E-value=1.9e+02 Score=25.13 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=26.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (800)
Q Consensus 750 ~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~e 781 (800)
+-..|...+++++..++.++...++|.+ |.|
T Consensus 6 ~f~eL~D~~~~L~~n~~~L~~ihesL~~-FNE 36 (58)
T PF08653_consen 6 QFAELSDSMETLDKNMEQLNQIHESLSD-FNE 36 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3455777888999999999999999999 876
No 458
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=21.45 E-value=54 Score=39.26 Aligned_cols=74 Identities=15% Similarity=0.361 Sum_probs=40.6
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--hhHHHHHHHHhh
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK----EQESLIDIFAEER--DRREREEENLRK 795 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k----~~~~li~~f~eer--~~~~~e~~~l~~ 795 (800)
-|.|++....+|-|.+.+.=|.+.+|.+ .||.|+++++++++.... =|..|.-++.-|| |-+|.|..||-+
T Consensus 372 aid~it~kvN~iiek~n~~fe~i~~ef~---~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~~~L~e 448 (550)
T PF00509_consen 372 AIDQITKKVNSIIEKMNKQFEQIDKEFN---EVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNVNNLYE 448 (550)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEECSCSSS---TTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHH---HHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHHHHHHH
Confidence 3555555555555555444444444332 344555555554444332 2445555666665 467888888877
Q ss_pred hhc
Q 003718 796 KIK 798 (800)
Q Consensus 796 kl~ 798 (800)
|+|
T Consensus 449 kvk 451 (550)
T PF00509_consen 449 KVK 451 (550)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 459
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.45 E-value=2e+02 Score=33.33 Aligned_cols=10 Identities=0% Similarity=0.298 Sum_probs=4.7
Q ss_pred CCHHhHHHhh
Q 003718 199 MNPDKMRHCM 208 (800)
Q Consensus 199 M~~eeL~~~L 208 (800)
.+.++|..+|
T Consensus 25 ~~~~~i~~~L 34 (451)
T PF03961_consen 25 LTLEEILEAL 34 (451)
T ss_pred CCHHHHHHHH
Confidence 4445554444
No 460
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=21.39 E-value=2.5e+02 Score=31.49 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=42.6
Q ss_pred CcccccccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 774 (800)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~ 774 (800)
.+|++. .+..|-|-=-++.+-.||.++|.++-.-.++...|+.|+.++++++--++|++.+
T Consensus 117 ~~v~~i--~tn~KYLIvn~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 117 RPVPDI--KTNDKYLIVNDQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred CcCCcc--ccCCcEEEecchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445443 5555656566677778888888877777777777888887777777777776543
No 461
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.01 E-value=4.7e+02 Score=27.94 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=7.9
Q ss_pred HHHHhhHHHHHHHHhhhh
Q 003718 780 AEERDRREREEENLRKKI 797 (800)
Q Consensus 780 ~eer~~~~~e~~~l~~kl 797 (800)
..|=.|+..|.+.||.|+
T Consensus 72 e~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 72 ENELQRKKNEAELLREKL 89 (202)
T ss_pred HHHHHHHhCHHHHhhhhh
Confidence 334444444444444443
No 462
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.99 E-value=4.4e+02 Score=29.11 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=37.1
Q ss_pred hhhhhhhhchHHHHHHHHhHHhHHHHHHh----hhcHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 003718 722 NLGQLKQENHELKKRLEKKEGELQEERER----CRSLEA------------------QLKVMQQTIEELNKEQESLIDIF 779 (800)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~k~l~~------------------~~~~~~~~l~~~~k~~~~li~~f 779 (800)
-+.+++.|..+.+|+....-..|+++++. .+..-+ |+.++.+||.-+.++|..=.|-+
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777666622 111111 34666677777776666555555
Q ss_pred HHHH
Q 003718 780 AEER 783 (800)
Q Consensus 780 ~eer 783 (800)
.|.|
T Consensus 144 ~e~~ 147 (258)
T PF15397_consen 144 NEMR 147 (258)
T ss_pred HHHH
Confidence 5544
No 463
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.93 E-value=3.3e+02 Score=32.17 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=12.0
Q ss_pred CCccccCCccccCCCCCCCCC
Q 003718 615 TPVKYREGASVSEPLSPSAED 635 (800)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~ 635 (800)
++.+.+..-+..++.++..++
T Consensus 69 ~~~~~~~~~~~~~~~~p~r~~ 89 (447)
T KOG2751|consen 69 SGKTPQESSVVVYFSPPVRDS 89 (447)
T ss_pred CCcchhhccceecccCccccc
Confidence 555655556666666655433
No 464
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.92 E-value=2.7e+02 Score=28.06 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=7.9
Q ss_pred hhHHHHHHHHhhhhc
Q 003718 784 DRREREEENLRKKIK 798 (800)
Q Consensus 784 ~~~~~e~~~l~~kl~ 798 (800)
....++.++|+.|++
T Consensus 155 ~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 155 EELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455556666554
No 465
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.91 E-value=2.2e+02 Score=33.70 Aligned_cols=52 Identities=29% Similarity=0.429 Sum_probs=30.2
Q ss_pred hhhhhhhchHHHHHHHHhHHh----------HHHHHH------------hhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGE----------LQEERE------------RCRSLEAQLKVMQQTIEELNKEQES 774 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~----------~~~e~~------------~~k~l~~~~~~~~~~l~~~~k~~~~ 774 (800)
|+...|+..+|.+||.+-.++ |++.++ .|..+..+||.+.-+|++|.||.|+
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667778888888776555 221111 1222223556666677777777664
No 466
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.90 E-value=2.7e+02 Score=34.82 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=13.1
Q ss_pred hhhhhhhchHHHHHHHHhHHhH
Q 003718 723 LGQLKQENHELKKRLEKKEGEL 744 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~ 744 (800)
+.+|+.|...||+++...++.-
T Consensus 368 v~~Lk~ELk~Lk~k~~~~~~~~ 389 (717)
T PF09730_consen 368 VIQLKAELKALKSKYNELEERY 389 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655543
No 467
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.88 E-value=2.6e+02 Score=28.98 Aligned_cols=54 Identities=28% Similarity=0.384 Sum_probs=25.0
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
|..|++|..+|++++++..++++-=+ |-.+.+.+++.+ -++.+-++.--.+|-|
T Consensus 28 i~~l~~e~~elkd~~lR~~AefeN~r---kR~~ke~~~~~~~a~~~~~~~LLpv~Dnl 82 (178)
T PRK14161 28 ITALKAEIEELKDKLIRTTAEIDNTR---KRLEKARDEAKDYAIATFAKELLNVSDNL 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 55566666666666665555443221 122222333333 4444444444445544
No 468
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=20.87 E-value=3.1e+02 Score=28.77 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=50.7
Q ss_pred hhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003718 724 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 789 (800)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e 789 (800)
+..+.|....+|-|.+..+++..+++ .+-|+++.++.-++|+.+-+.-+...+.++..-.....|
T Consensus 100 ek~~ReId~t~e~l~k~~~e~~~~~~-~~~~~~~~ke~~~~l~~~l~~~~~~~~ll~~l~e~~~~~ 164 (177)
T COG1510 100 EKWKREIDPTKEALKKLLEELNEDLD-DRDLTERIKEIKSKLERLLKWSEDYYELLTRLLEFLESE 164 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHcccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888887766654 357899999999999999999999998887766666555
No 469
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.78 E-value=6.2e+02 Score=30.49 Aligned_cols=90 Identities=23% Similarity=0.194 Sum_probs=0.0
Q ss_pred ccCCCCCccccc------ccchhhhhhhhhchHHHHHHH---HhHHhHHHHHHhhhcHHHHH----HHHHHHHHHHHHHH
Q 003718 706 EVNYPEHFLSDC------SLGANLGQLKQENHELKKRLE---KKEGELQEERERCRSLEAQL----KVMQQTIEELNKEQ 772 (800)
Q Consensus 706 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~k~l~~~~----~~~~~~l~~~~k~~ 772 (800)
||-|-+.+++|| -+-.-|+.|++|+.+=.-|++ ++.+.+-.|+++-+.+...- ++-+.|++-+.|.-
T Consensus 70 NVlG~~d~~pDPLsPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl 149 (508)
T PF00901_consen 70 NVLGTGDEPPDPLSPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKAL 149 (508)
T ss_pred HhccCCCCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhh
Q 003718 773 ESLIDIFAEERDRREREEENLRK 795 (800)
Q Consensus 773 ~~li~~f~eer~~~~~e~~~l~~ 795 (800)
+++..+.-+|+.+-++=..-|.+
T Consensus 150 ~~~~~i~~~E~~~l~~L~~AL~k 172 (508)
T PF00901_consen 150 KSYGKIVKEENKQLDRLARALQK 172 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=20.73 E-value=5.6e+02 Score=27.16 Aligned_cols=41 Identities=32% Similarity=0.505 Sum_probs=28.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003718 745 QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER 788 (800)
Q Consensus 745 ~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~ 788 (800)
.+||++.+ .+|+.=..+.+-+.||+.-++..+.|||.+..+
T Consensus 140 EkEReRLk---q~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~ 180 (192)
T PF09727_consen 140 EKERERLK---QQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKS 180 (192)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444 344444447788889999999999999987654
No 471
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.72 E-value=6.8e+02 Score=26.26 Aligned_cols=78 Identities=23% Similarity=0.364 Sum_probs=0.0
Q ss_pred cchhhhhhhhhchHHHHHHHHhHHhHHHHH---------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 719 LGANLGQLKQENHELKKRLEKKEGELQEER---------------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (800)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---------------~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer 783 (800)
|..-|...++.+..++.+|..++++|++=. .-+..|..+|..++.++++.++.-..|--=..-+=
T Consensus 73 Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 73 LRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhHHHHHHHHhhh
Q 003718 784 DRREREEENLRKK 796 (800)
Q Consensus 784 ~~~~~e~~~l~~k 796 (800)
+-+.++....++|
T Consensus 153 k~~~rql~~e~kK 165 (194)
T PF15619_consen 153 KSFRRQLASEKKK 165 (194)
T ss_pred hHHHHHHHHHHHH
No 472
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=20.63 E-value=2.6e+02 Score=31.06 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=22.2
Q ss_pred cccccccchhhhhhhhhchHHHHHHHHhHHhH---HHHHHhhhcHH
Q 003718 713 FLSDCSLGANLGQLKQENHELKKRLEKKEGEL---QEERERCRSLE 755 (800)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~k~l~ 755 (800)
.|+...++.-+++++.+..+++.+|...+..+ +.++++.+.|-
T Consensus 91 ~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~ 136 (370)
T PRK11578 91 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLA 136 (370)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555455555556556666666665555443 33444444443
No 473
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.58 E-value=7.1e+02 Score=25.17 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=15.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 749 ERCRSLEAQLKVMQQTIEELNKEQESLID 777 (800)
Q Consensus 749 ~~~k~l~~~~~~~~~~l~~~~k~~~~li~ 777 (800)
+.+...++.+++.+++|.++.+|...+++
T Consensus 63 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 91 (173)
T PRK13453 63 QAKLNAQKLEEENKQKLKETQEEVQKILE 91 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666666665555544
No 474
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.45 E-value=4.8e+02 Score=32.70 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=39.6
Q ss_pred chhhhhhhhhchHHHHHHHHh-------HHh---H----------HHHH----HhhhcHHHHHHHHHHHHHHH-------
Q 003718 720 GANLGQLKQENHELKKRLEKK-------EGE---L----------QEER----ERCRSLEAQLKVMQQTIEEL------- 768 (800)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~-------~~~---~----------~~e~----~~~k~l~~~~~~~~~~l~~~------- 768 (800)
+.-.++||+|..++|.|=.++ |++ | |-|. --.|.|++..+-+..|||++
T Consensus 75 e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~ia 154 (717)
T PF09730_consen 75 ELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIA 154 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333567788888887775443 222 1 2222 23455555555555555554
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 003718 769 NKEQESLIDIFAEERDRRE 787 (800)
Q Consensus 769 ~k~~~~li~~f~eer~~~~ 787 (800)
.+.-|--.+.+..||+.+-
T Consensus 155 e~qleEALesl~~EReqk~ 173 (717)
T PF09730_consen 155 EKQLEEALESLKSEREQKN 173 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666788899998754
No 475
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.45 E-value=5.6e+02 Score=30.71 Aligned_cols=76 Identities=30% Similarity=0.437 Sum_probs=0.0
Q ss_pred hhhhhhhchHHHHHHHHhHHh--HHHHH------HhhhcH-------------HHHHHHHHHHHHHHHHHHHHHHH----
Q 003718 723 LGQLKQENHELKKRLEKKEGE--LQEER------ERCRSL-------------EAQLKVMQQTIEELNKEQESLID---- 777 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~--~~~e~------~~~k~l-------------~~~~~~~~~~l~~~~k~~~~li~---- 777 (800)
|..-+.|+..|.=-|+|+.++ ..+|+ .|+|++ +++++-+|+--.++.|.--+-.|
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkr 485 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKR 485 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHhhHHHHHHHHhhhhc
Q 003718 778 ----------IFAEERDRREREEENLRKKIK 798 (800)
Q Consensus 778 ----------~f~eer~~~~~e~~~l~~kl~ 798 (800)
.|+||=.+|+.|-..=|.|||
T Consensus 486 EKe~~EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 486 EKETREQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 476
>PRK14157 heat shock protein GrpE; Provisional
Probab=20.44 E-value=2.6e+02 Score=30.23 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=35.3
Q ss_pred ccchhhhhhhhhchHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003718 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (800)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~-~l~~~~k~~~~li~~f 779 (800)
.+++-|..|++|..+|+++|++...+++-=+ |-.+.+.+++.+ -++.+-+..--++|-|
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyR---KR~~rE~e~~~~~a~~~~~~dLLpvlDnL 140 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYR---NRTQKEQDRFRQHGIIDVLTALLPALDDI 140 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3566688999999999999998877654322 222233333333 4555555444445544
No 477
>PRK10869 recombination and repair protein; Provisional
Probab=20.37 E-value=3.5e+02 Score=32.42 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003718 743 ELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 789 (800)
Q Consensus 743 ~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li~~f~eer~~~~~e 789 (800)
.++.|++.-...++.+++++++++++.++-..+-..+++.|.....+
T Consensus 328 ~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~ 374 (553)
T PRK10869 328 QLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKE 374 (553)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777888888899999988888888888888888776554
No 478
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=20.34 E-value=2.4e+02 Score=32.50 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=22.4
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
..|.+++.+++..++.=..+++.|+.+++.++++++.+.+|.+.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 18 RDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333455556666666666666555554443
No 479
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.25 E-value=2.7e+02 Score=33.62 Aligned_cols=15 Identities=53% Similarity=0.601 Sum_probs=6.4
Q ss_pred hhhchHHHHHHHHhH
Q 003718 727 KQENHELKKRLEKKE 741 (800)
Q Consensus 727 ~~~~~~~~~~~~~~~ 741 (800)
+++..++|+|++..+
T Consensus 190 ~~~~~~yk~~v~~i~ 204 (555)
T TIGR03545 190 KQDLEEYKKRLEAIK 204 (555)
T ss_pred chhHHHHHHHHHHHH
Confidence 334444444444433
No 480
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=20.23 E-value=7.9e+02 Score=23.73 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=19.8
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003718 735 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (800)
Q Consensus 735 ~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~li 776 (800)
+|=.+..++|..=.+.....++.+++++++|+++.+|-..++
T Consensus 26 ~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~ 67 (147)
T TIGR01144 26 TRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEII 67 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333334444444555555556655555544444
No 481
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.12 E-value=4.5e+02 Score=23.00 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=0.0
Q ss_pred hhhhhhhchHHHHHHHHhHHhHHHHH-----------HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003718 723 LGQLKQENHELKKRLEKKEGELQEER-----------ERCRSLEAQLKVMQQTIEELNKEQESL 775 (800)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~e~-----------~~~k~l~~~~~~~~~~l~~~~k~~~~l 775 (800)
++++++--.+|...+..+.++|+.-. +--..|+..+.++...|.++......|
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.05 E-value=2.5e+02 Score=27.07 Aligned_cols=40 Identities=30% Similarity=0.323 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003718 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k 770 (800)
..|++|+...+..+..=-.+-+.|+++++++|++|.++-.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.01 E-value=2.1e+02 Score=26.59 Aligned_cols=41 Identities=32% Similarity=0.439 Sum_probs=0.0
Q ss_pred chHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003718 730 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (800)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e~~~~k~l~~~~~~~~~~l~~~~k 770 (800)
...|++|+..++..+..=-.+-+.|+.++.+++.+|.++.|
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Done!