Query 003720
Match_columns 800
No_of_seqs 429 out of 2142
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1737 Oxysterol-binding prot 100.0 2E-125 3E-130 1095.1 40.5 678 81-787 76-799 (799)
2 KOG2209 Oxysterol-binding prot 100.0 5E-106 1E-110 831.3 15.8 375 405-787 26-445 (445)
3 PF01237 Oxysterol_BP: Oxyster 100.0 2.3E-95 5E-100 804.1 24.0 341 422-773 1-353 (354)
4 KOG2210 Oxysterol-binding prot 100.0 1.1E-61 2.5E-66 528.3 22.0 329 418-772 32-377 (392)
5 cd01247 PH_GPBP Goodpasture an 99.9 7.7E-23 1.7E-27 184.1 12.1 89 84-210 1-90 (91)
6 PF15413 PH_11: Pleckstrin hom 99.8 6.4E-21 1.4E-25 178.1 9.0 110 84-211 1-112 (112)
7 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 2.9E-20 6.2E-25 168.7 10.9 89 84-212 1-94 (95)
8 cd01251 PH_centaurin_alpha Cen 99.8 2.1E-18 4.6E-23 158.8 11.8 90 84-213 1-101 (103)
9 cd01233 Unc104 Unc-104 pleckst 99.8 4.7E-18 1E-22 155.6 12.3 91 82-212 2-98 (100)
10 cd01264 PH_melted Melted pleck 99.7 1.3E-17 2.7E-22 152.5 11.1 90 83-211 1-100 (101)
11 cd01238 PH_Tec Tec pleckstrin 99.7 2.6E-17 5.6E-22 152.4 11.1 91 83-211 1-106 (106)
12 cd01235 PH_SETbf Set binding f 99.7 3.4E-17 7.3E-22 149.0 11.7 87 85-211 2-100 (101)
13 cd01246 PH_oxysterol_bp Oxyste 99.7 8.2E-17 1.8E-21 142.8 11.9 90 84-211 1-91 (91)
14 cd01260 PH_CNK Connector enhan 99.7 8.9E-17 1.9E-21 145.5 11.4 88 84-211 2-96 (96)
15 PF15409 PH_8: Pleckstrin homo 99.7 1.1E-16 2.4E-21 142.6 10.0 86 86-212 1-89 (89)
16 cd01236 PH_outspread Outspread 99.7 3E-16 6.5E-21 144.5 11.0 87 85-210 2-102 (104)
17 cd01266 PH_Gab Gab (Grb2-assoc 99.6 6.7E-16 1.4E-20 143.3 10.8 88 84-211 1-107 (108)
18 cd01252 PH_cytohesin Cytohesin 99.6 1.5E-15 3.2E-20 144.4 13.0 91 84-214 2-115 (125)
19 cd01257 PH_IRS Insulin recepto 99.6 2E-15 4.3E-20 138.5 12.0 90 82-210 2-100 (101)
20 cd01250 PH_centaurin Centaurin 99.6 2.3E-15 5E-20 134.3 10.9 90 84-211 1-94 (94)
21 cd01241 PH_Akt Akt pleckstrin 99.6 7.4E-15 1.6E-19 135.0 11.6 92 83-211 2-101 (102)
22 KOG0690 Serine/threonine prote 99.5 2.4E-15 5.3E-20 159.5 -0.4 173 80-291 13-206 (516)
23 cd01245 PH_RasGAP_CG5898 RAS G 99.5 8.3E-14 1.8E-18 127.0 8.9 85 85-210 2-97 (98)
24 PF00169 PH: PH domain; Inter 99.5 4.3E-13 9.3E-18 119.6 13.3 93 83-212 2-103 (104)
25 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 2.1E-13 4.6E-18 124.5 10.7 76 95-211 18-98 (98)
26 cd01219 PH_FGD FGD (faciogenit 99.4 8.7E-13 1.9E-17 121.1 12.5 96 83-213 3-100 (101)
27 cd01263 PH_anillin Anillin Ple 99.4 2.1E-12 4.5E-17 122.3 9.9 91 84-211 3-122 (122)
28 cd01237 Unc112 Unc-112 pleckst 99.3 4.5E-12 9.8E-17 116.2 9.7 81 94-212 16-103 (106)
29 smart00233 PH Pleckstrin homol 99.3 6.7E-11 1.5E-15 103.5 12.6 93 83-212 2-101 (102)
30 cd01254 PH_PLD Phospholipase D 99.3 2.2E-11 4.8E-16 115.5 9.8 75 97-211 32-121 (121)
31 KOG0930 Guanine nucleotide exc 99.2 1.8E-11 4E-16 127.1 9.5 96 81-216 259-379 (395)
32 cd01253 PH_beta_spectrin Beta- 99.2 8.4E-11 1.8E-15 108.0 10.5 92 84-211 1-104 (104)
33 KOG1739 Serine/threonine prote 99.1 1.7E-10 3.7E-15 127.4 10.2 97 80-214 22-118 (611)
34 cd00821 PH Pleckstrin homology 99.1 4.4E-10 9.5E-15 97.4 9.2 91 84-211 1-96 (96)
35 KOG1090 Predicted dual-specifi 99.1 3.9E-11 8.5E-16 140.0 3.2 96 77-212 1629-1731(1732)
36 cd01220 PH_CDEP Chondrocyte-de 99.0 2.6E-09 5.6E-14 98.0 12.3 93 83-213 3-98 (99)
37 cd00900 PH-like Pleckstrin hom 99.0 6.3E-09 1.4E-13 90.8 11.6 87 85-211 2-99 (99)
38 cd01230 PH_EFA6 EFA6 Pleckstri 98.8 3.7E-08 8E-13 93.0 11.2 88 96-216 24-115 (117)
39 PF14593 PH_3: PH domain; PDB: 98.8 3.2E-08 7E-13 91.3 9.7 92 79-215 10-102 (104)
40 cd01256 PH_dynamin Dynamin ple 98.6 4.6E-07 9.9E-12 81.6 10.1 89 83-211 2-104 (110)
41 cd01218 PH_phafin2 Phafin2 Pl 98.5 9.1E-07 2E-11 81.9 11.9 94 83-215 5-101 (104)
42 cd01234 PH_CADPS CADPS (Ca2+-d 98.5 2.9E-07 6.4E-12 83.5 6.2 90 83-213 3-111 (117)
43 cd01249 PH_oligophrenin Oligop 98.4 1.5E-06 3.3E-11 79.9 9.0 47 163-209 52-102 (104)
44 PF15410 PH_9: Pleckstrin homo 98.3 9.3E-06 2E-10 76.9 11.5 103 84-212 2-118 (119)
45 cd01243 PH_MRCK MRCK (myotonic 98.2 1.9E-05 4.2E-10 74.1 12.7 99 81-213 1-120 (122)
46 cd01262 PH_PDK1 3-Phosphoinosi 98.1 9.9E-06 2.2E-10 72.4 8.5 86 83-212 2-88 (89)
47 cd01261 PH_SOS Son of Sevenles 98.1 3.2E-05 6.8E-10 72.6 11.3 102 83-213 5-110 (112)
48 KOG0521 Putative GTPase activa 98.0 2E-06 4.3E-11 104.1 2.3 97 80-216 272-372 (785)
49 cd01242 PH_ROK Rok (Rho- assoc 97.9 0.00014 3.1E-09 67.4 11.2 91 84-211 2-109 (112)
50 cd01239 PH_PKD Protein kinase 97.7 0.0003 6.5E-09 65.7 9.6 88 84-211 2-117 (117)
51 cd01259 PH_Apbb1ip Apbb1ip (Am 97.6 0.00013 2.7E-09 67.9 6.9 32 84-115 2-33 (114)
52 KOG0248 Cytoplasmic protein Ma 97.6 3.6E-05 7.8E-10 88.9 3.0 99 80-216 247-345 (936)
53 PTZ00267 NIMA-related protein 97.6 0.00016 3.5E-09 83.7 8.4 98 81-213 376-477 (478)
54 KOG3640 Actin binding protein 97.5 0.00012 2.5E-09 87.5 6.7 98 80-214 988-1108(1116)
55 PLN00188 enhanced disease resi 97.5 0.0004 8.6E-09 82.4 10.3 96 82-215 4-112 (719)
56 cd01258 PH_syntrophin Syntroph 97.5 0.00026 5.7E-09 65.9 6.8 95 86-210 3-107 (108)
57 KOG3723 PH domain protein Melt 97.5 6.1E-05 1.3E-09 85.6 2.7 97 81-216 734-840 (851)
58 PF12814 Mcp5_PH: Meiotic cell 97.3 0.0026 5.6E-08 60.8 11.0 93 85-212 12-121 (123)
59 KOG1117 Rho- and Arf-GTPase ac 97.3 0.00016 3.5E-09 85.5 3.3 122 80-242 85-208 (1186)
60 KOG2059 Ras GTPase-activating 97.2 0.00054 1.2E-08 80.1 7.2 98 79-217 561-669 (800)
61 cd01222 PH_clg Clg (common-sit 97.1 0.0054 1.2E-07 56.3 11.2 87 83-212 5-95 (97)
62 PLN02866 phospholipase D 97.0 0.0049 1.1E-07 76.1 12.5 111 80-215 180-310 (1068)
63 cd01221 PH_ephexin Ephexin Ple 96.8 0.0034 7.4E-08 60.0 7.2 79 98-209 27-119 (125)
64 cd01224 PH_Collybistin Collybi 96.7 0.02 4.3E-07 53.6 11.3 93 83-212 3-107 (109)
65 PF15406 PH_6: Pleckstrin homo 96.5 0.0057 1.2E-07 56.6 6.1 49 161-210 63-111 (112)
66 KOG1451 Oligophrenin-1 and rel 96.4 0.0067 1.4E-07 69.8 6.8 100 80-213 263-368 (812)
67 cd01240 PH_beta-ARK Beta adren 96.3 0.0038 8.2E-08 57.8 3.5 96 82-215 3-101 (116)
68 KOG0932 Guanine nucleotide exc 96.1 0.0053 1.1E-07 70.4 4.1 108 79-217 503-622 (774)
69 KOG3751 Growth factor receptor 95.7 0.03 6.4E-07 64.1 8.1 37 79-115 314-350 (622)
70 KOG4424 Predicted Rho/Rac guan 95.4 0.02 4.4E-07 66.2 5.6 105 77-216 267-373 (623)
71 cd01232 PH_TRIO Trio pleckstri 95.4 0.26 5.6E-06 46.7 11.9 52 162-213 56-113 (114)
72 PF15404 PH_4: Pleckstrin homo 95.2 0.22 4.7E-06 51.0 11.5 32 84-115 1-32 (185)
73 KOG0705 GTPase-activating prot 94.7 0.012 2.6E-07 67.8 1.2 36 179-214 445-481 (749)
74 cd01226 PH_exo84 Exocyst compl 94.6 0.3 6.5E-06 45.1 9.8 52 162-213 45-99 (100)
75 PTZ00283 serine/threonine prot 94.6 0.1 2.2E-06 61.1 8.6 35 179-213 455-490 (496)
76 cd01228 PH_BCR-related BCR (br 94.3 0.23 4.9E-06 45.3 8.1 89 83-211 4-93 (96)
77 KOG1117 Rho- and Arf-GTPase ac 93.8 0.18 3.8E-06 60.9 8.0 91 81-211 491-600 (1186)
78 KOG3543 Ca2+-dependent activat 93.8 0.021 4.6E-07 66.0 0.6 92 82-214 464-567 (1218)
79 KOG3531 Rho guanine nucleotide 92.8 0.024 5.2E-07 67.8 -0.9 95 80-214 922-1021(1036)
80 cd01227 PH_Dbs Dbs (DBL's big 92.8 1.4 3.1E-05 42.8 11.4 54 161-214 61-117 (133)
81 KOG0248 Cytoplasmic protein Ma 92.5 0.056 1.2E-06 63.5 1.6 90 79-211 257-347 (936)
82 cd01248 PH_PLC Phospholipase C 92.0 0.75 1.6E-05 43.2 8.3 34 177-210 77-114 (115)
83 cd01225 PH_Cool_Pix Cool (clon 89.0 2.5 5.4E-05 39.8 8.5 79 95-210 25-107 (111)
84 cd01223 PH_Vav Vav pleckstrin 88.8 4 8.7E-05 38.8 9.9 95 85-213 7-112 (116)
85 PF15408 PH_7: Pleckstrin homo 87.9 0.25 5.4E-06 44.1 1.2 32 85-118 1-32 (104)
86 KOG1170 Diacylglycerol kinase 78.2 0.11 2.3E-06 62.3 -6.5 90 84-214 4-96 (1099)
87 KOG1738 Membrane-associated gu 77.7 1.4 3E-05 52.2 2.2 37 82-118 562-601 (638)
88 KOG3551 Syntrophins (type beta 72.6 2.5 5.4E-05 47.4 2.5 94 84-212 294-401 (506)
89 KOG4807 F-actin binding protei 72.5 0.067 1.5E-06 59.2 -9.4 78 97-211 34-113 (593)
90 KOG3727 Mitogen inducible gene 64.8 1.2 2.6E-05 51.9 -1.9 53 161-213 400-459 (664)
91 KOG4424 Predicted Rho/Rac guan 64.7 7.7 0.00017 45.8 4.4 94 80-213 495-596 (623)
92 PF15405 PH_5: Pleckstrin homo 63.4 8.9 0.00019 37.4 4.0 34 83-116 2-35 (135)
93 KOG0592 3-phosphoinositide-dep 62.7 12 0.00027 44.1 5.5 92 80-216 449-541 (604)
94 KOG3520 Predicted guanine nucl 60.0 9.8 0.00021 48.4 4.4 56 162-217 667-726 (1167)
95 cd01255 PH_TIAM TIAM Pleckstri 50.4 1.2E+02 0.0027 30.0 9.2 28 187-214 129-156 (160)
96 KOG3531 Rho guanine nucleotide 41.1 14 0.0003 45.4 1.6 100 79-217 747-849 (1036)
97 KOG0517 Beta-spectrin [Cytoske 39.9 1.6 3.5E-05 56.8 -6.5 102 79-214 2296-2411(2473)
98 KOG4236 Serine/threonine prote 38.4 47 0.001 39.5 5.1 96 80-211 411-522 (888)
99 PF08458 PH_2: Plant pleckstri 37.5 54 0.0012 31.1 4.5 33 181-213 72-104 (110)
100 cd01231 PH_Lnk LNK-family Plec 37.0 1.3E+02 0.0028 28.3 6.7 36 176-211 71-107 (107)
101 KOG3523 Putative guanine nucle 32.7 67 0.0015 38.5 5.2 21 189-209 571-591 (695)
102 PF10146 zf-C4H2: Zinc finger- 29.2 1.4E+02 0.0031 31.8 6.7 34 261-294 47-80 (230)
103 KOG2070 Guanine nucleotide exc 28.7 84 0.0018 36.9 5.0 77 98-211 325-405 (661)
104 PF14254 DUF4348: Domain of un 24.9 85 0.0018 34.1 4.0 40 581-620 225-266 (273)
105 KOG3551 Syntrophins (type beta 24.3 65 0.0014 36.7 3.1 53 162-214 215-273 (506)
106 PF10504 DUF2452: Protein of u 23.3 66 0.0014 32.4 2.6 24 500-523 86-109 (159)
107 PF07889 DUF1664: Protein of u 22.0 2.4E+02 0.0051 27.4 6.0 65 230-294 59-123 (126)
108 KOG4797 Transcriptional regula 21.7 1.9E+02 0.0041 27.3 5.1 36 265-300 65-100 (123)
109 KOG4047 Docking protein 1 (p62 21.4 51 0.0011 38.2 1.7 30 81-110 7-38 (429)
110 KOG3003 Molecular chaperone of 20.9 1.8E+02 0.0039 31.1 5.4 40 497-548 181-221 (236)
No 1
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-125 Score=1095.14 Aligned_cols=678 Identities=40% Similarity=0.615 Sum_probs=549.7
Q ss_pred CcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccc-hhhhhcccccccccc----cc
Q 003720 81 SASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDS-IRFMRKANWSSHRLG----FA 155 (800)
Q Consensus 81 ~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~-~~~~~~~~~~~~~~~----~~ 155 (800)
+..++|||+||++|+++|++|||+|.+|+|+||++++..+..+..++.+....|+.+. ..+++.... ..+.+ ..
T Consensus 76 ~~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~-~q~~~~~~~~~ 154 (799)
T KOG1737|consen 76 GASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERMDICSVDGS-CQIYLVELSKK 154 (799)
T ss_pred cccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCCcccchhhcc-cchhhhhhhHH
Confidence 4578999999999999999999999999999999999999888888888778887643 233333221 11111 12
Q ss_pred ccCCCcceeEEcc-ceEEEecCCCCCceEEEeCCeEEEEEcCC---H-HHHHHHHHHHHHHHHHccccccCC--CCCCC-
Q 003720 156 ARQCKPFGEIHLK-VSSVRASKSDDKRLTIFTGTKTLHLRCIS---R-EDRTVWIDALQAAKDLFPRLLTST--DFSPS- 227 (800)
Q Consensus 156 ~~~~~p~G~I~L~-~~si~~~~~d~~rF~I~t~~rt~~L~A~s---~-edr~~Wi~AL~~a~~~~~~~~~~~--~~~~~- 227 (800)
.......+.++|. ...+... ++..++.+.+.+++.+++.+. . +.+..|+++++.+..++++..... ...+.
T Consensus 155 ~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~ 233 (799)
T KOG1737|consen 155 LQRQGWLHALELAPLIAVEQT-SEYENENKSVMTKRIPLSIAVISVAQETREINVDVLRLLSSLPNLTGQLLLRELNALL 233 (799)
T ss_pred Hhhcchhhhhhhccchhhhcc-ccccccccccccccccchhhhhcccccchhhhhhhhhhccccccchhhhhhhhhcccc
Confidence 3344466777887 5566666 777888888888888888774 3 789999999999999887633221 11111
Q ss_pred ----------ccccccHHHHHHHHhhcccchhhHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003720 228 ----------EDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEATV 297 (800)
Q Consensus 228 ----------~~~~~s~e~lr~rL~e~g~~e~~ik~~e~i~~se~s~l~~~l~~~~~~~~~ll~~l~~Le~ek~~le~~~ 297 (800)
..+...++++.++++.++.+...+++||+++++++...+.++....+++..|+++++||++++.+||.++
T Consensus 234 ~~~~~~s~s~~k~~~~~e~~~~k~~~s~~s~~a~~~~e~~~~s~~~~~s~~s~~~~~q~~~l~~~l~~le~q~~~le~a~ 313 (799)
T KOG1737|consen 234 EDKKEQSSSKSKLQERTERIALKVLTSLASVFAECDDEAELLSQSRIESDASHSESEQRIRLQEALSALENQNTDLEVAL 313 (799)
T ss_pred ccccccccchhhhHHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhHhhhhhhcchhhhhhhhhhHHHHHHhhhhhHHHHH
Confidence 1134448888999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccccccccccCCCCccccCccccccCCCCCCCCcccccCCCCCCCCCCCcccccccccccCc--ccccc---------c
Q 003720 298 VDETKERDSYCGQGNRRYSDFYSVMSEGSASDSDAENESQDGADVETDEDDGIFFDTNDFLSS--EALRS---------V 366 (800)
Q Consensus 298 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~f~da~~~~~~--~~~~~---------~ 366 (800)
.....++........ +.. +. + .........+++++||||.+.++. ....+ .
T Consensus 314 ~~~~~~~~~~~~~~~-------------~~~-~~-~---~~~~~~~~~~e~~e~~da~s~~s~~~~~~~s~~~~e~~~s~ 375 (799)
T KOG1737|consen 314 RRAHAAQAALDLSKV-------------TRL-SL-L---HEEESFSESDELTEQFDAESSLSDAQESLDSNSESENEGSE 375 (799)
T ss_pred hHhhhhhhccCcccc-------------ccc-cc-c---ccccccccccccccccccccccchhhhccCCcccccccccc
Confidence 654433322211110 000 11 1 111344455666789999886541 00101 0
Q ss_pred ccccc-cccCccccc---ccccchhccccCccCccccccCCcccccCCCCCCccCCCCchhHHHHhhccCCCCCcccccc
Q 003720 367 SYRSR-EAMGHACIY---DKELLFSDRLRGVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPV 442 (800)
Q Consensus 367 ~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lP~~~~~~~~~slwsilK~~iGkDLtkislPv 442 (800)
..-+. ++.+..+-. ..+... .......+. .....+.++||++||++..++.+++||+|||++||||||+|+|||
T Consensus 376 ~~~s~~s~~~~~~~~~~~~~d~~~-~~~~~~~~~-~~~~~~~~~rr~~lp~~~~~~~~islw~~~k~~iGkDlskv~~PV 453 (799)
T KOG1737|consen 376 DEESYTSDISDNGSSDALSADGDK-SSQALNEKV-PSGSGAEVARRTNLPAPSKPSSSISLWSILRNNIGKDLSKVSMPV 453 (799)
T ss_pred cccccccccccCCCcccccccccc-ccccccccc-cccccccccccccCCCCcCcCCCccHHHHHhhcccccccccccce
Confidence 00000 000000000 000000 000111100 001145579999999998889999999999999999999999999
Q ss_pred ccccccChHHHhhhhccchHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCeeEEEeCCCCeEEE
Q 003720 443 YFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFF 522 (800)
Q Consensus 443 ~f~EP~S~LQrl~e~~ey~~lLd~Aa~~~~~~d~~eRm~~V~aF~vS~y~~~~~r~~KPfNPiLGETfe~~~~d~g~rfi 522 (800)
+||||+|+|||++|+|||++|||+|+++ +|+++||++|+||++|+|+.+..|.+|||||||||||||+++|+|+|||
T Consensus 454 ~~nEP~S~LQr~~EdlEYs~LLd~A~~~---~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf~ 530 (799)
T KOG1737|consen 454 EFNEPLSLLQRVAEDLEYSELLDKAANY---EDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRFF 530 (799)
T ss_pred ecCCcchHHHHhhhhccchhhhHHHHhc---CCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceeee
Confidence 9999999999999999999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred EEecccCCcccceeeeCCCeEEEEEeeeeEEEEEeEEEEEeceEEEEEecC-CceEEeeccceeeeeeecceeeEeecce
Q 003720 523 SEKVSHHPMIVACHCEGRDWKFWADSNLKGKFWGRSIQLDPVGVLTLQFDD-GETFQWSKVTTSIYNIILGKIYCDHYGT 601 (800)
Q Consensus 523 aEQVSHHPPIsA~~~e~~g~~~~g~~~~kskF~G~si~v~~~G~~~l~f~~-gE~Y~~~~pt~~v~nii~G~~~~e~~G~ 601 (800)
+|||||||||+|||||+++|.|||++.+++||||+||+|.|.|.++|+|++ |++|+|.+|+++|||||+|++|||++|.
T Consensus 531 sEqVSHhPPi~A~h~es~~w~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~ge 610 (799)
T KOG1737|consen 531 SEQVSHHPPISACHAESNNWTFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYGE 610 (799)
T ss_pred eeeeccCCCcccccccCCCceeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeecccccccccc
Confidence 999999999999999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred EEEEcCC-C-ceEEEEeeecCcccCCCcEEEEEEEeCCCCcEEEEEEEEecceEEEEeCCCCCCCCCCCCCCCcEEEEee
Q 003720 602 MRIRGSG-N-YSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWER 679 (800)
Q Consensus 602 ~~I~~~t-g-~~~~l~F~~~~~~g~~~~~V~G~V~~~~~g~~~~~i~G~Wd~~i~~~~~~~~~k~k~~~~~~~~~~lW~~ 679 (800)
|.|++++ + .+|.|+|++.|||+++.++|.|.|++ .+|++++++.|+|++.|++..++..+ +..+..+..++|++
T Consensus 611 ~~i~n~~~~~~~c~L~F~~~~~~~~~~~ev~g~V~~-~s~~~~~~l~GkW~e~~~~~~~~~~~---~~~~~~~~~~iWk~ 686 (799)
T KOG1737|consen 611 MEITNHTTGSDKCKLKFVKAGYFSRNAREVEGSVRN-KSGKKVEVLTGKWDESLYYFKVDKVG---LPEPETSEKLIWKA 686 (799)
T ss_pred EEEecCCCCcceeEEEEeeecccCCCcceeEEEEeC-CCCceeEEEeeeehhhhhhccccccc---cccCCccceeeeec
Confidence 9999965 4 46999999999999999999999999 99999999999999999997766533 34455678999999
Q ss_pred CCCCcccccccccccccccCCCccccCCCCCCCCcchHhHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc---CCCcccc
Q 003720 680 GKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQE---SGWQPSW 756 (800)
Q Consensus 680 ~~~~~~~~y~~t~fa~~lNel~~~~~~~l~PTDSR~RpD~raLe~Gd~d~A~~eK~rLEe~QR~~Rk~re---~~w~P~~ 756 (800)
++.|+..+|+||.||++||+++|.+.+.|||||||+|||||+||+|+|++|+.||.||||+||++|+.|+ ..|+|+|
T Consensus 687 ~~~Pkn~~y~ft~fai~LNel~p~l~~~lpPTDSRlRPDqr~lE~G~~~~a~~EK~rlEe~QR~~r~~re~~~~~~~prw 766 (799)
T KOG1737|consen 687 NDLPKNNKYNFTGFAIELNELTPHLKKLLPPTDSRLRPDQRALENGEYDEANAEKLRLEEKQRARRRKREENGEEYEPRW 766 (799)
T ss_pred CCCCCCcccccchhheecccCCchhhccCCCCCcccCcchhhhhccChhhhhhhhHhHHHHHHHHHHHHHhhcccccccc
Confidence 9988668999999999999999999999999999999999999999999999999999999999988765 3599999
Q ss_pred eEeCCC-C-ceEEcCChhhhhccCCCCCCcccc
Q 003720 757 FCKDED-G-CYRYMGGYWEAREKGDWGDIAEIF 787 (800)
Q Consensus 757 F~~~~~-~-~~~y~g~Ywe~r~~~~w~~~~dif 787 (800)
|.++++ . .|+|+|+|||+|++.+|..|+|||
T Consensus 767 F~~~~~~~~~~~~ng~Ywe~r~~~d~~~~~~if 799 (799)
T KOG1737|consen 767 FEKVKDPSTYWVYNGGYWEAREKQDWKDCPDIF 799 (799)
T ss_pred ccccCCCcceEEecCchheeecccCccccccCC
Confidence 999943 3 699999999999999999999998
No 2
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-106 Score=831.31 Aligned_cols=375 Identities=41% Similarity=0.733 Sum_probs=348.8
Q ss_pred ccccCCCCCCccCCCCchhHHHHhhccCCCCCccccccccccccChHHHhhhhccchHHHHHHHhcCCCCCHHHHHHHHH
Q 003720 405 VKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVA 484 (800)
Q Consensus 405 ~~~R~~lP~~~~~~~~~slwsilK~~iGkDLtkislPv~f~EP~S~LQrl~e~~ey~~lLd~Aa~~~~~~d~~eRm~~V~ 484 (800)
.+.||+||+|+-....+|||+|||+||||||++|+|||.||||+||||||+|.|+|.+||.+|+.+ .||+|||.+|+
T Consensus 26 hk~RT~LPa~m~sr~d~SIW~Ilr~ciGkelSkiTmPV~~NEPLSFLQRltEyme~~yLi~kAs~~---~~p~eRmqyVA 102 (445)
T KOG2209|consen 26 HKHRTSLPAPMFSRNDFSIWSILRKCIGKELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSQ---SDPVERMQYVA 102 (445)
T ss_pred hhhcccCCccccccccccHHHHHHhhhchhhhheeeeeeeCCcHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999999999974 89999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCeeEEEeCCCCeEEEEEecccCCcccceeee--CCCeEEEEEeeeeEEEEEeEEEEE
Q 003720 485 AFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCE--GRDWKFWADSNLKGKFWGRSIQLD 562 (800)
Q Consensus 485 aF~vS~y~~~~~r~~KPfNPiLGETfe~~~~d~g~rfiaEQVSHHPPIsA~~~e--~~g~~~~g~~~~kskF~G~si~v~ 562 (800)
|||||+.++.-.|..|||||||||||++.+.|.|+|||||||||||||||||+| +..|.|.|.+.++.||||+||++.
T Consensus 103 AFAvsavas~weR~gKPFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~fhGsi~PklkFWgksvea~ 182 (445)
T KOG2209|consen 103 AFAVSAVASQWERTGKPFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAE 182 (445)
T ss_pred HHHHHHHHHhHHHhcCCCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceEEeeeecccceeccceeecC
Confidence 999999999888999999999999999999999999999999999999999999 579999999999999999999999
Q ss_pred eceEEEEEec-CCceEEeeccceeeeeeecceeeEeecceEEEEcC-CCceEEEEeeecCcccCCCcEEEEEEEeCCCCc
Q 003720 563 PVGVLTLQFD-DGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGS-GNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGE 640 (800)
Q Consensus 563 ~~G~~~l~f~-~gE~Y~~~~pt~~v~nii~G~~~~e~~G~~~I~~~-tg~~~~l~F~~~~~~g~~~~~V~G~V~~~~~g~ 640 (800)
|.|.++|+|. .||.|+|+.|+.+|||||+|++||+++|+|.|.++ ||+.|+++|++.|+||++.|+|+|+|+| ++.+
T Consensus 183 Pkgtitle~~k~nEaYtWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~Fk~~G~~gk~lHkVEG~i~d-~~k~ 261 (445)
T KOG2209|consen 183 PKGTITLELLKHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNFKPCGLFGKELHKVEGHIQD-KSKK 261 (445)
T ss_pred CCceEEEEecccCcceeccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEecccccccccchhheeehhhc-cccc
Confidence 9999999998 59999999999999999999999999999999995 8999999999999999999999999999 8999
Q ss_pred EEEEEEEEecceEEEEeCCCC-----------C-----CC------CC---------CCCCCCcEEEEeeCCCCc--ccc
Q 003720 641 KVAMLVGKWDEAMYYVLGDPT-----------T-----KP------KG---------YDPMTEAVLLWERGKTVT--KTR 687 (800)
Q Consensus 641 ~~~~i~G~Wd~~i~~~~~~~~-----------~-----k~------k~---------~~~~~~~~~lW~~~~~~~--~~~ 687 (800)
+++.|.|+|.+.|+.+..... . +. ++ ....+++++||..++.|+ ..+
T Consensus 262 kl~~lYGkWTe~l~~cd~esf~~~~Kq~~r~~~~r~~s~~~~~see~dd~P~~ds~~v~~iPgSk~LW~~n~rP~n~~~~ 341 (445)
T KOG2209|consen 262 KLCALYGKWTECLYSCDPESFDAFKKQDKRNTEERKNSKQMSTSEELDDMPVPDSESVFIIPGSKLLWRINPRPPNSAQM 341 (445)
T ss_pred cchhhhccHHHHHhcCCHHHHHHHHHhhhhcchhhhhhccCCchhhccCCCCCCcceeEecCCCeEEEEecCCCCCHHHh
Confidence 999999999999987643210 0 00 00 111356789999999888 899
Q ss_pred cccccccccccCCCccccCCCCCCCCcchHhHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc---cCCCcccceEeCCCC-
Q 003720 688 YNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQ---ESGWQPSWFCKDEDG- 763 (800)
Q Consensus 688 y~~t~fa~~lNel~~~~~~~l~PTDSR~RpD~raLe~Gd~d~A~~eK~rLEe~QR~~Rk~r---e~~w~P~~F~~~~~~- 763 (800)
|+||.||+.|||+.+++..-+||||||+|||+|+||+|++|.|.+||+||||+||++||.| +..|+|+||.+.+++
T Consensus 342 y~FT~FalsLNem~~~M~~tl~pTD~RlRpDi~~mE~G~~D~AseeK~rlEEkQRe~Rk~rs~~~~dw~~rWF~~~~np~ 421 (445)
T KOG2209|consen 342 YNFTSFALSLNEMDKGMESTLPPTDCRLRPDIRAMENGNIDQASEEKKRLEEKQREARKNRSKSEEDWKTRWFHQGPNPY 421 (445)
T ss_pred hchhhheeehhhhccCcccccCCcccccCchhhhhhcCCcchhHHHHHHHHHHHHHHHhhcccccccCcchhcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988 457999999998544
Q ss_pred ----ceEEcCChhhhhccCCCCCCcccc
Q 003720 764 ----CYRYMGGYWEAREKGDWGDIAEIF 787 (800)
Q Consensus 764 ----~~~y~g~Ywe~r~~~~w~~~~dif 787 (800)
.|.|.||||+ +++++|||||
T Consensus 422 t~~~dWlYsGgYwd----R~ysn~~~i~ 445 (445)
T KOG2209|consen 422 TGAQDWLYSGGYWD----RNYSNCPDIY 445 (445)
T ss_pred CCcccceeecCccc----cccccCcccC
Confidence 4999999998 7899999998
No 3
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=2.3e-95 Score=804.08 Aligned_cols=341 Identities=48% Similarity=0.850 Sum_probs=265.7
Q ss_pred hhHHHHhhccCCCCCccccccccccccChHHHhhhhccchHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccccCCCCCCC
Q 003720 422 GLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKP 501 (800)
Q Consensus 422 slwsilK~~iGkDLtkislPv~f~EP~S~LQrl~e~~ey~~lLd~Aa~~~~~~d~~eRm~~V~aF~vS~y~~~~~r~~KP 501 (800)
|||++||+++|||||+|+|||+||||+|+|||++++|+|++||++|+. .+||++||++|++|+||+|+.+..|++||
T Consensus 1 s~w~~lK~~~G~dLs~islPv~~~eP~S~Lqr~~~~~~y~~lL~~Aa~---~~d~~eR~~~V~~f~~S~~~~~~~~~~KP 77 (354)
T PF01237_consen 1 SIWSFLKQKIGKDLSRISLPVFFNEPRSFLQRLAEDFEYPDLLDKAAE---EDDPLERMLYVAAFALSSYSSTPGRTKKP 77 (354)
T ss_dssp HHHHHHHHT--S-GGGS---GGGEEEEEGGGGGGGGSSSHHHHHGGGG---S-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHhhhcCCCChhcCccCceecCCCcHHHhhhhhhhChHHHhccCC---CCCHHHHHHHHHHHHHhhhhhhcCCCCcC
Confidence 699999999999999999999999999999999999999999999987 48999999999999999999887788999
Q ss_pred CCCCCCCeeEEEeCCCCeEEEEEecccCCcccceeeeCCCeEEEEEeeeeEEEEEeEEEEEeceEEEEEecC-CceEEee
Q 003720 502 FNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGRDWKFWADSNLKGKFWGRSIQLDPVGVLTLQFDD-GETFQWS 580 (800)
Q Consensus 502 fNPiLGETfe~~~~d~g~rfiaEQVSHHPPIsA~~~e~~g~~~~g~~~~kskF~G~si~v~~~G~~~l~f~~-gE~Y~~~ 580 (800)
||||||||||+.++ +|++|+||||||||||||||++++||+++|++.++++|+|+||++.+.|.++|+|.+ ||+|+|+
T Consensus 78 fNPiLGETfe~~~~-~~~~~~aEQVSHHPPisa~~~~~~~~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~ 156 (354)
T PF01237_consen 78 FNPILGETFELVRP-DGTRFIAEQVSHHPPISAFHAEGRGWKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWT 156 (354)
T ss_dssp E---TT-EE--TT--T-EEEEEEEEETTTTEEEEEEEETTEEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE
T ss_pred cCCCCcceeeeccC-ceEEEEEecccCCCCceEEEEEcCCEEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEe
Confidence 99999999999988 799999999999999999999999999999999999999999999999999999997 7999999
Q ss_pred ccceeeeeeecceeeEeecceEEEEcC-CCceEEEEeeecCcccCCCcEEEEEEEeCCCCcEEEEEEEEecceEEEEeCC
Q 003720 581 KVTTSIYNIILGKIYCDHYGTMRIRGS-GNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGD 659 (800)
Q Consensus 581 ~pt~~v~nii~G~~~~e~~G~~~I~~~-tg~~~~l~F~~~~~~g~~~~~V~G~V~~~~~g~~~~~i~G~Wd~~i~~~~~~ 659 (800)
+|++.|+||++|++|+|++|+|+|+|. +|++|+|+|+++|+|+++.+.|+|.|++ .+|++++.|.|+||+.|++...+
T Consensus 157 ~p~~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f~~~~~~v~G~I~~-~~~~~~~~i~G~W~~~i~~~~~~ 235 (354)
T PF01237_consen 157 KPTTYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWFSGKSNEVEGKIYD-SKGKPIYKISGKWDEEIYIKDVK 235 (354)
T ss_dssp --SEEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSSTSSSTTEEEEEEES-SGGG-SEEEEEETTSEEEEEETT
T ss_pred cCcEEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCcccccceeeEEEEEE-ccCceeEEeeeeeCCeEEEEecc
Confidence 999999999999999999999999995 8999999999999999999999999999 89999999999999999998765
Q ss_pred CCCCCCCCCCCCCcEEEEeeCCCCc--ccccccccccccccCCCccccCCCCCCCCcchHhHHHHhcCCHHHHHHHHHHH
Q 003720 660 PTTKPKGYDPMTEAVLLWERGKTVT--KTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRL 737 (800)
Q Consensus 660 ~~~k~k~~~~~~~~~~lW~~~~~~~--~~~y~~t~fa~~lNel~~~~~~~l~PTDSR~RpD~raLe~Gd~d~A~~eK~rL 737 (800)
... ..++..++|++++.+. ..+|+||.||++||++++.+.+.++|||||+|||+|||++||+++|++||.+|
T Consensus 236 ~~~------~~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~~~~~~~~~ptDSr~R~d~~al~~gd~~~A~~eK~~l 309 (354)
T PF01237_consen 236 NDS------DTGESKLLWDANPLPPNPKKYYGFTQFAIPLNELTPELEEKLPPTDSRWRPDQRALENGDIDKAQEEKKRL 309 (354)
T ss_dssp ----------GGGEEEEEETTTS-SS--B----------G-------G-GS-TTBHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred ccc------cCCCceEEEECCCCcccccceecccccccccccccccccccCCchhccchHHHHHHHcCCHHHHHHHHHHH
Confidence 210 1136789999998776 68899999999999999987789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc---CCCcccceEeC-----CCCceEEcCChhh
Q 003720 738 EQLQRQARQLQE---SGWQPSWFCKD-----EDGCYRYMGGYWE 773 (800)
Q Consensus 738 Ee~QR~~Rk~re---~~w~P~~F~~~-----~~~~~~y~g~Ywe 773 (800)
||+||++||+|+ ..|+|+||+++ +...|+|+|||||
T Consensus 310 Ee~QR~~rk~R~~~~~~w~Pr~F~~~~d~~~~~~~w~~~g~YW~ 353 (354)
T PF01237_consen 310 EEKQRADRKERKEKGEEWKPRWFEKVEDPSTEEEEWVYKGGYWE 353 (354)
T ss_dssp HHHHHHHHHHHHHCT--GGGSSEEEEE-SSS--T----------
T ss_pred HHHHHHHHHHHHHcCCCccCCeEEECCCCCCccccccccccccC
Confidence 999999998764 57999999987 3457999999997
No 4
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-61 Score=528.28 Aligned_cols=329 Identities=25% Similarity=0.340 Sum_probs=281.6
Q ss_pred CCCchhHHHHhh-ccCCCCCccccccccccccChHHHhhhhccchHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccccCC
Q 003720 418 EKPVGLWSIIKD-NIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEG 496 (800)
Q Consensus 418 ~~~~slwsilK~-~iGkDLtkislPv~f~EP~S~LQrl~e~~ey~~lLd~Aa~~~~~~d~~eRm~~V~aF~vS~y~~~~~ 496 (800)
+....+|.++++ .+|+|||+|+||.|++||+|+||++++.+.+.+||-.+.. .+||++||+.|++|++|+|+....
T Consensus 32 ~~~s~i~~L~sq~rpg~DLs~v~LPtfile~rs~Le~~~~~~~~~dll~~~~~---~~~p~~R~~~VvkwylS~~~~~~~ 108 (392)
T KOG2210|consen 32 EGKSIILDLLSQLRPGMDLSRVVLPTFILEPRSLLEKYTDFSYHPDLLLEASS---EADPLERMLAVVKWYLSGFHAGPK 108 (392)
T ss_pred hccceeecHhhhccCCCCcccccchhhhhhhHHHHHHhhhhhhccchhccccc---CCCHHHHhhhheeeeehhcccccc
Confidence 344557999988 8999999999999999999999999999988888877664 689999999999999999998887
Q ss_pred CCCCCCCCCCCCeeEEEeC-----C-CCeEEEEEecccCCcccceeeeC--CCeEEEEEeeeeEEEEEeEEEEEeceEEE
Q 003720 497 RQCKPFNPLLGETYEADYP-----D-KGLRFFSEKVSHHPMIVACHCEG--RDWKFWADSNLKGKFWGRSIQLDPVGVLT 568 (800)
Q Consensus 497 r~~KPfNPiLGETfe~~~~-----d-~g~rfiaEQVSHHPPIsA~~~e~--~g~~~~g~~~~kskF~G~si~v~~~G~~~ 568 (800)
...|||||||||||.|.|. + ..+.|+||||||||||||||++. +|+.+.|++.++++|.|+||.|.+.|..+
T Consensus 109 ~~~~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~ 188 (392)
T KOG2210|consen 109 GRKKPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGV 188 (392)
T ss_pred cccCCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEccccCeEEEEEEeecccccccceeEEEcCCcE
Confidence 7788999999999999983 2 35899999999999999999975 69999999999999999999999999999
Q ss_pred EEecC-CceEEeeccceeeeeeecceeeEeecceEEEEc-CCCceEEEEeeecCcccCCCcEEEEEEEeCCCCcEEEEEE
Q 003720 569 LQFDD-GETFQWSKVTTSIYNIILGKIYCDHYGTMRIRG-SGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLV 646 (800)
Q Consensus 569 l~f~~-gE~Y~~~~pt~~v~nii~G~~~~e~~G~~~I~~-~tg~~~~l~F~~~~~~g~~~~~V~G~V~~~~~g~~~~~i~ 646 (800)
|+|.+ +|+|.++.|..++.|+++|.+|++..|+++|.| ++++.+.+.|+.++|+|+..+.+.|.|+.....+..+.|.
T Consensus 189 l~ll~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~~a~~~~~~~~f~g~~~s~~~~~ik~~~~~~~~~~i~ 268 (392)
T KOG2210|consen 189 LKLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGLSAILESILKPFLGGKNSFNARSIKGPIDKKDFCSIS 268 (392)
T ss_pred EEEEecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcceeeeEeeccCcccccccccceEEEEcccccccccccc
Confidence 99875 999999999999999999999999999999999 5899999999999999999999999999855666778899
Q ss_pred EEecceEEEEeCCCCCCCCCCCCCCCcEEEEeeCCCCcccccccccccccccCCCccccCCCCCCCCcc--hHhHHHHhc
Q 003720 647 GKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRL--RPDQRYLEN 724 (800)
Q Consensus 647 G~Wd~~i~~~~~~~~~k~k~~~~~~~~~~lW~~~~~~~~~~y~~t~fa~~lNel~~~~~~~l~PTDSR~--RpD~raLe~ 724 (800)
|+||+.|+++..+.. +...+-+....+. . .....+.++|-|.+||. +++++||..
T Consensus 269 G~W~~~~~~k~~~~~----------~~~~~~d~~~~~~-----------~--~~~v~pLeEQ~e~ESrrlWk~Vt~ai~~ 325 (392)
T KOG2210|consen 269 GEWDGVMYAKYAKSG----------ESRNFVDCKKLPV-----------T--KPKVRPLEEQGEYESRRLWKEVTEAILA 325 (392)
T ss_pred eeecccEEEEEcCCC----------ceeecccccccCc-----------C--CCCcCChHHcCcHHHHHHHHHHHHHHHh
Confidence 999999999875531 1112222222221 0 01112346678899996 689999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcc---CCCcccceEeC-CCCceEEcCChh
Q 003720 725 GEYELANAEKLRLEQLQRQARQLQE---SGWQPSWFCKD-EDGCYRYMGGYW 772 (800)
Q Consensus 725 Gd~d~A~~eK~rLEe~QR~~Rk~re---~~w~P~~F~~~-~~~~~~y~g~Yw 772 (800)
||++.|+++|..|||+||++||.|+ ..|+||||..+ .++.|.|...-|
T Consensus 326 ~d~~~Ate~K~~iEe~QR~~ak~ree~g~~W~pk~F~~~~~~~~~~~~~~~~ 377 (392)
T KOG2210|consen 326 GDIEQATEEKFELEEKQRELAKKREESGEEWKPKLFKVDEDGGDWDYRNYLP 377 (392)
T ss_pred ccHHHHhHHHhHHHHHHHHHHHHHHHhCCcceecceeEcCCCCCcccccccc
Confidence 9999999999999999999988775 46999999999 445798875543
No 5
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.89 E-value=7.7e-23 Score=184.12 Aligned_cols=89 Identities=35% Similarity=0.652 Sum_probs=79.0
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcce
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (800)
++|||+||||++|+||+|||||++|.|+||+++.+. ...|+|
T Consensus 1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~--------------------------------------~~~~~G 42 (91)
T cd01247 1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEK--------------------------------------SHGCRG 42 (91)
T ss_pred CceEEEEeccccCCCceEEEEEECCEEEEEecCccC--------------------------------------cCCCcE
Confidence 479999999999999999999999999999986531 113889
Q ss_pred eEEccceEEEecCCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHH
Q 003720 164 EIHLKVSSVRASKSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 164 ~I~L~~~si~~~~~d~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~ 210 (800)
.|+|+.|.+...+.+..+|.|.++. |+|+|+|+|.+||++||+||+.
T Consensus 43 ~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 43 SIFLKKAIIAAHEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999998777778899997766 9999999999999999999985
No 6
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.83 E-value=6.4e-21 Score=178.07 Aligned_cols=110 Identities=53% Similarity=0.892 Sum_probs=62.9
Q ss_pred eEEEEEeecCC-CCCceeeEEEEe-CCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 84 VAGILYKWVNY-GKGWRSRWFVLE-DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 84 ~~G~L~K~~n~-~kgWr~RWFvL~-~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
++|||+||+|+ ++|||+|||||+ ||+|+|||+.. ...+++++|+.+.+.+...++..+.....
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------ 65 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPR---------DKKDVRIIGEESSRVIRKGDWSISRRSSR------ 65 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS----------------------TT-SB-SEEEE---GGGT------
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeeccc---------ccccccccccchhceEeecccCccccccc------
Confidence 68999999999 999999999999 99999999833 34567888887777666555544332211
Q ss_pred ceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 162 ~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
...++.. -.....+.+.|+|+|++|+|||+|+|.+|+.+||+||++|
T Consensus 66 ~~~~~~~---~~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 66 IQGIKDK---NPFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -EEEES----T--SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccccccC---CcccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 1111111 1112455567888999999999999999999999999986
No 7
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.83 E-value=2.9e-20 Score=168.68 Aligned_cols=89 Identities=30% Similarity=0.549 Sum_probs=76.9
Q ss_pred eEEEEEeecC--CCCCceeeEEEEeC--CeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 84 VAGILYKWVN--YGKGWRSRWFVLED--GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 84 ~~G~L~K~~n--~~kgWr~RWFvL~~--g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
++|||+|+++ ..|+||+|||||++ +.|+||+++.+ .
T Consensus 1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d----------------------------------------~ 40 (95)
T cd01265 1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD----------------------------------------A 40 (95)
T ss_pred CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc----------------------------------------c
Confidence 4799999986 57999999999974 68999997432 2
Q ss_pred CcceeEEccceEEEecCCC-CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 160 KPFGEIHLKVSSVRASKSD-DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~~d-~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
+|+|.|+|..+++.....+ +..|.|.|++|+|+|+|+|++||+.||+||+.++
T Consensus 41 ~p~G~I~L~~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 41 KPLGRVDLSGAAFTYDPREEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSKR 94 (95)
T ss_pred cccceEECCccEEEcCCCCCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhhc
Confidence 4899999999888765444 6789999999999999999999999999999875
No 8
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.77 E-value=2.1e-18 Score=158.77 Aligned_cols=90 Identities=28% Similarity=0.470 Sum_probs=73.6
Q ss_pred eEEEEEeecCC-CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 84 VAGILYKWVNY-GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 84 ~~G~L~K~~n~-~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
++|||.|+|.. .++||+|||||+++.|+||+++.+ ..|.
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d----------------------------------------~~~~ 40 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLD----------------------------------------AFAK 40 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCC----------------------------------------cCcC
Confidence 48999999986 599999999999999999997442 2378
Q ss_pred eeEEccce----EEEecCC-----CC-CceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVS----SVRASKS-----DD-KRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 163 G~I~L~~~----si~~~~~-----d~-~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
|+|.|..+ +|..... +. ..|.|.|+.|+|+|+|+|++||.+||+||+.|..
T Consensus 41 G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 41 GEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred cEEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 99999754 3432211 11 2799999999999999999999999999999965
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.76 E-value=4.7e-18 Score=155.59 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=78.4
Q ss_pred cceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 82 ASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 82 ~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
+.++|||.|+++..+.|++|||||+++.|+||+++.. ..|
T Consensus 2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~----------------------------------------~~~ 41 (100)
T cd01233 2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKD----------------------------------------PVE 41 (100)
T ss_pred cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCC----------------------------------------ccE
Confidence 3578999999999999999999999999999998542 237
Q ss_pred ceeEEccceEEEecCC------CCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRASKS------DDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 162 ~G~I~L~~~si~~~~~------d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
.|.|.|..+.+..... .+..|.|.++.|+|+|+|+|.+|+++||+||+...
T Consensus 42 ~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 42 RGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred eeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 8999999887765533 24679999999999999999999999999998763
No 10
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.74 E-value=1.3e-17 Score=152.51 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=75.3
Q ss_pred ceEEEEEeecC---CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 83 SVAGILYKWVN---YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 83 ~~~G~L~K~~n---~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
.++|||.|+++ ++|.||+|||+|+++.|+|||.+... .
T Consensus 1 ~~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~---------------------------------------~ 41 (101)
T cd01264 1 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD---------------------------------------D 41 (101)
T ss_pred CcceEEeecCccceeeecceeEEEEEeCCEEEEEeccCcc---------------------------------------C
Confidence 36899999998 89999999999999999999975421 1
Q ss_pred CcceeEEccceEEEecCCC-------CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 160 KPFGEIHLKVSSVRASKSD-------DKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~~d-------~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
.+.|+|+|..+..+....+ +..|.|.|+.|||+|+|+|++++++||++|+.|
T Consensus 42 ~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 42 PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 1459999998875544222 257889999999999999999999999999987
No 11
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.72 E-value=2.6e-17 Score=152.37 Aligned_cols=91 Identities=24% Similarity=0.280 Sum_probs=72.8
Q ss_pred ceEEEEEeecCCC-----CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccccc
Q 003720 83 SVAGILYKWVNYG-----KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 83 ~~~G~L~K~~n~~-----kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
+++|+|+|++..- ++||+|||||+++.|+||+++...
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-------------------------------------- 42 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-------------------------------------- 42 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc--------------------------------------
Confidence 3689999996322 489999999999999999975321
Q ss_pred CCCcceeEEccceEEEecC----------CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 158 QCKPFGEIHLKVSSVRASK----------SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~~~----------~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
...|+|+|+|..+...+.. .+...|.|.++.|+|+|.|+|.+||++||+||+.+
T Consensus 43 ~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 43 RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 1238899999987655431 12456899999999999999999999999999863
No 12
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.72 E-value=3.4e-17 Score=149.01 Aligned_cols=87 Identities=26% Similarity=0.434 Sum_probs=71.3
Q ss_pred EEEEEeecCCCCCceeeEEEEe--CCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 85 AGILYKWVNYGKGWRSRWFVLE--DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 85 ~G~L~K~~n~~kgWr~RWFvL~--~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
+|||.|+|+..+.||+|||||. ++.|+||+++.. ..|.
T Consensus 2 ~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~----------------------------------------~~~~ 41 (101)
T cd01235 2 EGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFED----------------------------------------TAEK 41 (101)
T ss_pred eEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCC----------------------------------------Cccc
Confidence 7999999999999999999998 469999997432 2378
Q ss_pred eeEEccceEEEec-C---------CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRAS-K---------SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 163 G~I~L~~~si~~~-~---------~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
|.|+|..+..... . .....|.|.++.|+|+|+|+|.+|+++||.||+++
T Consensus 42 g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 42 GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhh
Confidence 9999997654432 1 11234678899999999999999999999999986
No 13
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.71 E-value=8.2e-17 Score=142.77 Aligned_cols=90 Identities=53% Similarity=0.892 Sum_probs=79.0
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcce
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (800)
|+|||+|+++..++|++|||||.++.|+||+++.... ..|.|
T Consensus 1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~--------------------------------------~~~~~ 42 (91)
T cd01246 1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMR--------------------------------------GKPRG 42 (91)
T ss_pred CeEEEEEecccCCCceeeEEEEECCEEEEEecCccCC--------------------------------------CCceE
Confidence 6899999998889999999999999999999854310 13789
Q ss_pred eEEccceEEEecCCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003720 164 EIHLKVSSVRASKSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 164 ~I~L~~~si~~~~~d~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
.|+|..+.+.....++..|.|.++. ++|+|+|+|.+|+.+||.||+.|
T Consensus 43 ~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 43 TILLSGAVISEDDSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEeceEEEEECCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 9999999887766667889999887 99999999999999999999875
No 14
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.70 E-value=8.9e-17 Score=145.48 Aligned_cols=88 Identities=25% Similarity=0.459 Sum_probs=73.0
Q ss_pred eEEEEEeecCCCC----CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 84 VAGILYKWVNYGK----GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 84 ~~G~L~K~~n~~k----gWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
++|||+|++..++ .|++|||||.++.|+||+++.. .
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~----------------------------------------~ 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD----------------------------------------E 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC----------------------------------------C
Confidence 6899999976544 8999999999999999997543 2
Q ss_pred CcceeEEccceEEEecCC--CCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003720 160 KPFGEIHLKVSSVRASKS--DDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~~--d~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
.|.|.|.|..+.+..... ....|.|.++. |+|+|+|+|.+++++||.||+.|
T Consensus 42 ~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 KAEGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred ccceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 377999999887765422 33457788887 99999999999999999999875
No 15
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.69 E-value=1.1e-16 Score=142.64 Aligned_cols=86 Identities=38% Similarity=0.644 Sum_probs=75.4
Q ss_pred EEEEee-cCCCCCceeeEEEE--eCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 86 GILYKW-VNYGKGWRSRWFVL--EDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 86 G~L~K~-~n~~kgWr~RWFvL--~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
|||.|+ .+..+||++||||| .+|+|+||+++.. .+++
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~----------------------------------------~~~r 40 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNS----------------------------------------GKLR 40 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCC----------------------------------------CeeE
Confidence 788765 89999999999999 8899999997432 1378
Q ss_pred eeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 163 G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
|+|++..+.|... .+.++|.|-+|+.+|||+|.|.+|++.||.||+.|+
T Consensus 41 Gsi~v~~a~is~~-~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a~ 89 (89)
T PF15409_consen 41 GSIDVSLAVISAN-KKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKAK 89 (89)
T ss_pred eEEEccceEEEec-CCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhcC
Confidence 9999999988754 477899999999999999999999999999999874
No 16
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.67 E-value=3e-16 Score=144.54 Aligned_cols=87 Identities=24% Similarity=0.460 Sum_probs=69.6
Q ss_pred EEEEEeec---------CCCCCceeeEEEEe-CCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccc
Q 003720 85 AGILYKWV---------NYGKGWRSRWFVLE-DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGF 154 (800)
Q Consensus 85 ~G~L~K~~---------n~~kgWr~RWFvL~-~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~ 154 (800)
+|||+|.. -..|+||+|||||. ++.|+||+++.+
T Consensus 2 ~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~------------------------------------ 45 (104)
T cd01236 2 CGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP------------------------------------ 45 (104)
T ss_pred cceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC------------------------------------
Confidence 79999963 24689999999997 578888875321
Q ss_pred cccCCCcceeEEccceEEEecCCC----CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 003720 155 AARQCKPFGEIHLKVSSVRASKSD----DKRLTIFTGTKTLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 155 ~~~~~~p~G~I~L~~~si~~~~~d----~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~ 210 (800)
..+|+|+|+|..|..+....+ ...|.|.|+.|+|+|.|+|.+|++.||++|..
T Consensus 46 ---~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 46 ---TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred ---CcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence 234889999998886654322 24688999999999999999999999999964
No 17
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.65 E-value=6.7e-16 Score=143.25 Aligned_cols=88 Identities=28% Similarity=0.356 Sum_probs=70.8
Q ss_pred eEEEEEeecCCCC----CceeeEEEEeCCe-------EEEEeecCCCccccCcccCCCceeecccchhhhhccccccccc
Q 003720 84 VAGILYKWVNYGK----GWRSRWFVLEDGV-------LSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRL 152 (800)
Q Consensus 84 ~~G~L~K~~n~~k----gWr~RWFvL~~g~-------L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~ 152 (800)
.+|||.|++...+ +||+|||||+++. |.||+++..
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~---------------------------------- 46 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK---------------------------------- 46 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC----------------------------------
Confidence 3799999998654 8999999999865 699997432
Q ss_pred cccccCCCcceeEEccceEEEecC----CCCCc----eEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 153 GFAARQCKPFGEIHLKVSSVRASK----SDDKR----LTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 153 ~~~~~~~~p~G~I~L~~~si~~~~----~d~~r----F~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
.+|.|.|+|..+.+.... ..+.+ |.|.++.|+|+|.|+|.+||+.||.||+..
T Consensus 47 ------~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 47 ------FKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ------CccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 248899999998765331 22222 889999999999999999999999999753
No 18
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.64 E-value=1.5e-15 Score=144.43 Aligned_cols=91 Identities=25% Similarity=0.474 Sum_probs=75.3
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcce
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (800)
++|||+|+++..++|++|||||.++.|+||++... ..|.|
T Consensus 2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~----------------------------------------~~~~g 41 (125)
T cd01252 2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTD----------------------------------------KEPRG 41 (125)
T ss_pred cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCC----------------------------------------CCceE
Confidence 58999999999999999999999999999997432 23789
Q ss_pred eEEccceEEEecCC--CCCceEEEeCC---------------------eEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 164 EIHLKVSSVRASKS--DDKRLTIFTGT---------------------KTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 164 ~I~L~~~si~~~~~--d~~rF~I~t~~---------------------rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
.|+|..+.|..... ....|.|.+++ ++|+|+|+|.+|+++||.||+.+...
T Consensus 42 ~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 42 IIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred EEECCCcEEEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 99999888775533 33347676543 68999999999999999999999764
No 19
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.63 E-value=2e-15 Score=138.53 Aligned_cols=90 Identities=21% Similarity=0.321 Sum_probs=72.7
Q ss_pred cceEEEEEeecCCCCCceeeEEEEeCC------eEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccc
Q 003720 82 ASVAGILYKWVNYGKGWRSRWFVLEDG------VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (800)
Q Consensus 82 ~~~~G~L~K~~n~~kgWr~RWFvL~~g------~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 155 (800)
+.++|||.|+ |.||+|||||+++ .|.||+++..-.
T Consensus 2 v~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~----------------------------------- 42 (101)
T cd01257 2 VRKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFL----------------------------------- 42 (101)
T ss_pred ccEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhcc-----------------------------------
Confidence 5789999998 8899999999887 899999853200
Q ss_pred ccCCCcceeEEccceEEEecCCCC---CceEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 003720 156 ARQCKPFGEIHLKVSSVRASKSDD---KRLTIFTGTKTLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~~~~d~---~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~ 210 (800)
.....|.|+|+|..|..+....+. ..|.|.|+.|+|+|.|+|++|++.||+||..
T Consensus 43 ~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 43 QKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ccCCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 011459999999999866443333 3577999999999999999999999999964
No 20
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.62 E-value=2.3e-15 Score=134.27 Aligned_cols=90 Identities=33% Similarity=0.555 Sum_probs=73.6
Q ss_pred eEEEEEeecCC-CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 84 VAGILYKWVNY-GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 84 ~~G~L~K~~n~-~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
++|||+|++.. .++|++|||||.++.|.||++.... ...+.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~--------------------------------------~~~~~ 42 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDY--------------------------------------DNAHV 42 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCccc--------------------------------------ccccc
Confidence 58999999865 7889999999999999999974321 11266
Q ss_pred eeEEccceEEEecCC---CCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKS---DDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 163 G~I~L~~~si~~~~~---d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
+.|.|..+++..... ....|.|.++.++|+|+|+|.++++.||.||+.+
T Consensus 43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 43 KEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred eEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhcC
Confidence 899998877765433 2456889999999999999999999999999863
No 21
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.59 E-value=7.4e-15 Score=135.04 Aligned_cols=92 Identities=27% Similarity=0.412 Sum_probs=67.1
Q ss_pred ceEEEEEeecCCCCCceeeEEEEe-CCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLE-DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~-~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
.++|||.|+++..+.||+|||+|+ ++.|.||+++..+. . .+..+
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~-~----------------------------------~~~i~ 46 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDG-D----------------------------------PFLPP 46 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCcc-C----------------------------------ccccc
Confidence 589999999999999999999998 78999999754211 0 01124
Q ss_pred ceeEEccceEEEec-CCCCCceEEE------eCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRAS-KSDDKRLTIF------TGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 162 ~G~I~L~~~si~~~-~~d~~rF~I~------t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
.+.+.+..|++... ......|.|. +..|+| .|+|.+||+.||+||+.+
T Consensus 47 l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r~f--~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 47 LNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIERTF--HVESPEEREEWIHAIQTV 101 (102)
T ss_pred cCCeEEeeeeeeeccCCCcceEEEEeccCCcccCEEE--EeCCHHHHHHHHHHHHhh
Confidence 45556655555422 2334578886 235655 599999999999999986
No 22
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-15 Score=159.50 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=120.0
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEE-eCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVL-EDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWr~RWFvL-~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
+.++++|||+|+|.++|+||+|||+| .||.|.-|+.+..+. . ..
T Consensus 13 ~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~-~----------------------------------~~ 57 (516)
T KOG0690|consen 13 EDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEV-Q----------------------------------PT 57 (516)
T ss_pred hhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccC-C----------------------------------CC
Confidence 45689999999999999999999999 579999999865432 1 11
Q ss_pred CCcceeEEccceEEEec-CCCCCceEEEeC------CeEEEEEcCCHHHHHHHHHHHHHHHHHccccc----cCCC--CC
Q 003720 159 CKPFGEIHLKVSSVRAS-KSDDKRLTIFTG------TKTLHLRCISREDRTVWIDALQAAKDLFPRLL----TSTD--FS 225 (800)
Q Consensus 159 ~~p~G~I~L~~~si~~~-~~d~~rF~I~t~------~rt~~L~A~s~edr~~Wi~AL~~a~~~~~~~~----~~~~--~~ 225 (800)
..|.....+..|.+... +..++.|.|.+- .|||| ++|.++|+.|++|||++....++.- +... ..
T Consensus 58 p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTTVIERTF~--ves~~eRq~W~~AIq~vsn~l~q~e~~~tn~~p~~~~ 135 (516)
T KOG0690|consen 58 PEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTTVIERTFY--VESAEERQEWIEAIQAVSNRLKQEELMDTNGNPEGEM 135 (516)
T ss_pred cccccchhhhhhhhhhccCCCCceEEEEeeeeeeeeeeeee--cCCHHHHHHHHHHHHHHhhhhhhhhhcccCCCccccc
Confidence 23666667777765533 455677877653 48888 7999999999999999988766521 1111 11
Q ss_pred CCccccccHHHHHHHHhhcccchhhHHHHHHHhhhchhhHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003720 226 PSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQ-------NQLNALQRKHIMLLGTLRQLETEKM 291 (800)
Q Consensus 226 ~~~~~~~s~e~lr~rL~e~g~~e~~ik~~e~i~~se~s~l~-------~~l~~~~~~~~~ll~~l~~Le~ek~ 291 (800)
..+..+.+..-....+.-.+..+. +.-..+.+++|..|+ ++++++++|....+++++.|.+|.|
T Consensus 136 d~~~~s~s~d~~~e~m~i~~t~~~--~~~~kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKevi 206 (516)
T KOG0690|consen 136 DVNMGSPSDDFGSEEMSIAETEEA--KRKNKVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVI 206 (516)
T ss_pred cccCCCCCccccceeeeecccccc--cccceeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhhe
Confidence 112233333222223332333322 222477889999988 8999999999999999999988765
No 23
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.49 E-value=8.3e-14 Score=126.95 Aligned_cols=85 Identities=26% Similarity=0.307 Sum_probs=71.4
Q ss_pred EEEEEeecCC-CCCceeeEEEEeC----CeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 85 AGILYKWVNY-GKGWRSRWFVLED----GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 85 ~G~L~K~~n~-~kgWr~RWFvL~~----g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
.|||.|+|.. .|.||+|||+|.+ +.|+||+.+.+ .
T Consensus 2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~----------------------------------------~ 41 (98)
T cd01245 2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKK----------------------------------------T 41 (98)
T ss_pred CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCC----------------------------------------C
Confidence 5999999987 8999999999986 99999997543 2
Q ss_pred CcceeEEccceEEEecCCC----CCceEEEeCCe--EEEEEcCCHHHHHHHHHHHHH
Q 003720 160 KPFGEIHLKVSSVRASKSD----DKRLTIFTGTK--TLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~~d----~~rF~I~t~~r--t~~L~A~s~edr~~Wi~AL~~ 210 (800)
.|.|.|+|..+.|...... +.-|.|.++.+ +|+++|++ +||++||++|+.
T Consensus 42 ~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 42 KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 3889999999988764322 35677888875 99999999 999999999985
No 24
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.49 E-value=4.3e-13 Score=119.59 Aligned_cols=93 Identities=34% Similarity=0.494 Sum_probs=78.5
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
.++|||.|++...++|++|||||.++.|+||++... .....+.
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~-------------------------------------~~~~~~~ 44 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKD-------------------------------------KSDSKPK 44 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTT-------------------------------------TTESSES
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCcc-------------------------------------ccceeee
Confidence 579999999988899999999999999999998542 0123488
Q ss_pred eeEEccceEEEecCC--------CCCceEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKS--------DDKRLTIFTGTK-TLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 163 G~I~L~~~si~~~~~--------d~~rF~I~t~~r-t~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
+.|.|..+.+..... ....|.|.++.+ +|+|+|+|.+++..||+||+.|.
T Consensus 45 ~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 45 GSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 999999998886533 345688888875 99999999999999999999985
No 25
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.48 E-value=2.1e-13 Score=124.50 Aligned_cols=76 Identities=26% Similarity=0.333 Sum_probs=62.6
Q ss_pred CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceEEEe
Q 003720 95 GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRA 174 (800)
Q Consensus 95 ~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~ 174 (800)
.++||+|||+|++..|+||++.. ..|.|+|+|......+
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~-----------------------------------------~~~~g~I~L~~i~~ve 56 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQ-----------------------------------------CKKSALIKLAAIKGTE 56 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCC-----------------------------------------CceeeeEEccceEEEE
Confidence 37899999999999999999632 2388999998776554
Q ss_pred cCCC-----CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 175 SKSD-----DKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 175 ~~~d-----~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
.-.+ ...|.|.++.|+|+|.|+|.+||++||.||+.+
T Consensus 57 ~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 57 PLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEKQ 98 (98)
T ss_pred EcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhcC
Confidence 3211 246889999999999999999999999999863
No 26
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.45 E-value=8.7e-13 Score=121.12 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=79.3
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
.++|||.|.+...++||+|||+|-+++|.|++.+... ....-+++
T Consensus 3 ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~-----------------------------------~~~~y~~~ 47 (101)
T cd01219 3 LKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMI-----------------------------------GGSKFKVR 47 (101)
T ss_pred ccceEEEEEecCCCCceeEEEEEeCCEEEEEEccccc-----------------------------------CCCcEEEE
Confidence 5799999999999999999999998899999953210 01122377
Q ss_pred eeEEccceEEEecC--CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASK--SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 163 G~I~L~~~si~~~~--~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
+.|+|....|.... .....|.|.+.+|+|+|+|+|++||.+||+||+.|++
T Consensus 48 ~~i~l~~~~v~~~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 48 ARIDVSGMQVCEGDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEecccEEEEeCCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 99999998887542 2356799999999999999999999999999999975
No 27
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=2.1e-12 Score=122.30 Aligned_cols=91 Identities=21% Similarity=0.398 Sum_probs=67.8
Q ss_pred eEEEEEe-e-cCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 84 VAGILYK-W-VNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 84 ~~G~L~K-~-~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
..|+|.- + ++..|.|++|||||.++.|+||+...+. ....|
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~-------------------------------------~~~~P 45 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE-------------------------------------KRKGP 45 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc-------------------------------------ccCCc
Confidence 5799984 3 5678999999999999999999974431 12348
Q ss_pred ceeEEccceEEEec-------CCCCCceEEEe--CC-----------------eEE-EEEcCCHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRAS-------KSDDKRLTIFT--GT-----------------KTL-HLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 162 ~G~I~L~~~si~~~-------~~d~~rF~I~t--~~-----------------rt~-~L~A~s~edr~~Wi~AL~~a 211 (800)
.|.|+|..|.+... ....+.|.|.+ ++ |++ .|.|+|.+||+.||.||+.|
T Consensus 46 lg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 46 TGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred eEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 99999999887543 22344577632 21 444 58899999999999999864
No 28
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=4.5e-12 Score=116.23 Aligned_cols=81 Identities=26% Similarity=0.542 Sum_probs=64.4
Q ss_pred CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceEEE
Q 003720 94 YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVR 173 (800)
Q Consensus 94 ~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~ 173 (800)
..|+||+|||+|.|+.|+|||+++.. ...|.+.|.|.+|.|.
T Consensus 16 ~~K~~KrrwF~lk~~~L~YyK~kee~--------------------------------------~~~p~i~lnl~gcev~ 57 (106)
T cd01237 16 TLKGYKQYWFTFRDTSISYYKSKEDS--------------------------------------NGAPIGQLNLKGCEVT 57 (106)
T ss_pred hhhhheeEEEEEeCCEEEEEccchhc--------------------------------------CCCCeEEEecCceEEc
Confidence 36889999999999999999986531 1237788999999987
Q ss_pred ecC-CCCCceE--EEeCC----eEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 174 ASK-SDDKRLT--IFTGT----KTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 174 ~~~-~d~~rF~--I~t~~----rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
... .....|. +.++. |+|+|+|+|++++++||.|++.|.
T Consensus 58 ~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 58 PDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS 103 (106)
T ss_pred ccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence 553 1244566 45554 999999999999999999999885
No 29
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.26 E-value=6.7e-11 Score=103.53 Aligned_cols=93 Identities=34% Similarity=0.548 Sum_probs=76.8
Q ss_pred ceEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 83 SVAGILYKWVN-YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 83 ~~~G~L~K~~n-~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
.++|||+++.. ....|++|||+|.++.|.||+..... ....+
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-------------------------------------~~~~~ 44 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAK-------------------------------------KDYKP 44 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCcc-------------------------------------ccCCC
Confidence 57999999987 66789999999999999999975321 01237
Q ss_pred ceeEEccceEEEecCC-----CCCceEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRASKS-----DDKRLTIFTGTK-TLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 162 ~G~I~L~~~si~~~~~-----d~~rF~I~t~~r-t~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
.+.|+|..+.+..... ....|.|.++++ +|+|+|+|.+++..|+.+|+.+.
T Consensus 45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 7999999998776644 356788888887 99999999999999999999874
No 30
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.26 E-value=2.2e-11 Score=115.46 Aligned_cols=75 Identities=23% Similarity=0.536 Sum_probs=56.7
Q ss_pred CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceE-EEec
Q 003720 97 GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSS-VRAS 175 (800)
Q Consensus 97 gWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~s-i~~~ 175 (800)
+|++|||||+++.|.||++... .+++|+|.+.... |...
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~----------------------------------------~~~~~vil~D~~f~v~~~ 71 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSS----------------------------------------AQILDVILFDVDFKVNGG 71 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCC----------------------------------------CceeeEEEEcCCccEEeC
Confidence 6999999999999999997432 1255666664322 2211
Q ss_pred --------------CCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 176 --------------KSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 176 --------------~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
......|.|.|++|+|+|.|+|..++++||+||+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 72 GKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred CcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 122346889999999999999999999999999875
No 31
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.8e-11 Score=127.10 Aligned_cols=96 Identities=26% Similarity=0.496 Sum_probs=75.5
Q ss_pred CcceEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 81 SASVAGILYKWVN-YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 81 ~~~~~G~L~K~~n-~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
....+|||.|.++ ..|.||+|||+|.+++|+||.--. +.
T Consensus 259 npdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tT----------------------------------------DK 298 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTT----------------------------------------DK 298 (395)
T ss_pred CccccceeeeecCCcccchhheeEEeecceeeeeeecc----------------------------------------CC
Confidence 4468999999976 679999999999999999998532 22
Q ss_pred CcceeEEccceEEEecCCCCCc--eEEEeC----------------------CeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003720 160 KPFGEIHLKVSSVRASKSDDKR--LTIFTG----------------------TKTLHLRCISREDRTVWIDALQAAKDLF 215 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~~d~~r--F~I~t~----------------------~rt~~L~A~s~edr~~Wi~AL~~a~~~~ 215 (800)
.|+|.|.|.--+|+..+...+. |.++.+ .-.|.++|.+.+|+..||++|+++...-
T Consensus 299 EPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~ 378 (395)
T KOG0930|consen 299 EPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRD 378 (395)
T ss_pred CCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence 3889999999999866444333 444321 2469999999999999999999998764
Q ss_pred c
Q 003720 216 P 216 (800)
Q Consensus 216 ~ 216 (800)
|
T Consensus 379 P 379 (395)
T KOG0930|consen 379 P 379 (395)
T ss_pred c
Confidence 4
No 32
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.20 E-value=8.4e-11 Score=107.98 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=64.1
Q ss_pred eEEEEE-eec-------CCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccc
Q 003720 84 VAGILY-KWV-------NYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (800)
Q Consensus 84 ~~G~L~-K~~-------n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 155 (800)
++|+|. |+. ...+.|++|||||.++.|+||+++......
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~--------------------------------- 47 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAEN--------------------------------- 47 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccC---------------------------------
Confidence 478887 432 235789999999999999999975421000
Q ss_pred ccCCCcceeEEccceEEEecC---CCCCceEEE-eCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 156 ARQCKPFGEIHLKVSSVRASK---SDDKRLTIF-TGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~~~---~d~~rF~I~-t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
. .....|+|..+.|.... ..+..|.|. ++.++|.|+|+|.++++.||.||+++
T Consensus 48 -~--~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 48 -V--HGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred -C--CCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 0 01125667666554432 233568875 45699999999999999999999864
No 33
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.13 E-value=1.7e-10 Score=127.37 Aligned_cols=97 Identities=34% Similarity=0.554 Sum_probs=87.5
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
...-++|+|.||+||+.||+.|||+|.+|.|+||++.... ..
T Consensus 22 gw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~--------------------------------------~h 63 (611)
T KOG1739|consen 22 GWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDET--------------------------------------EH 63 (611)
T ss_pred CchhhcceeeeeecccccccceEEEEcccchhhhhhhhhh--------------------------------------hc
Confidence 3456899999999999999999999999999999985431 11
Q ss_pred CcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 160 KPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
.++|.|.|+.+.|...+.|.++|.|.++....+|+|.+...|+.|+++|+-.+..
T Consensus 64 GcRgsi~l~ka~i~ahEfDe~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk~e 118 (611)
T KOG1739|consen 64 GCRGSICLSKAVITAHEFDECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMKTE 118 (611)
T ss_pred ccceeeEeccCCcccccchhheeeeEeccceeeehhcCcHHHHHHHHHHHHHhhc
Confidence 2889999999999999999999999999999999999999999999999998873
No 34
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.09 E-value=4.4e-10 Score=97.44 Aligned_cols=91 Identities=40% Similarity=0.618 Sum_probs=74.5
Q ss_pred eEEEEEeecCCC-CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 84 VAGILYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 84 ~~G~L~K~~n~~-kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
++|||+++.... ..|++|||+|.++.|.||+...... ...+.
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~-------------------------------------~~~~~ 43 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKK-------------------------------------SYKPK 43 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCc-------------------------------------CCCCc
Confidence 479999988665 7899999999999999998643210 12378
Q ss_pred eeEEccceEEEecCCC---CCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKSD---DKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 163 G~I~L~~~si~~~~~d---~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
+.|.|..+.+...... ...|.|.+.. +.|+|+|+|.+|+..|+.+|+.|
T Consensus 44 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 44 GSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred ceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhcC
Confidence 9999999888766543 5788998877 99999999999999999999864
No 35
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=99.09 E-value=3.9e-11 Score=140.01 Aligned_cols=96 Identities=26% Similarity=0.399 Sum_probs=78.8
Q ss_pred CCCCCcceEEEEEeecCCCCCceeeEEEEeC--CeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccc
Q 003720 77 GGGVSASVAGILYKWVNYGKGWRSRWFVLED--GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGF 154 (800)
Q Consensus 77 ~~~~~~~~~G~L~K~~n~~kgWr~RWFvL~~--g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~ 154 (800)
++.++.+.+|+|||+|...|+|++|||||+. ..|+||.+..+
T Consensus 1629 ~~teNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~ed------------------------------------ 1672 (1732)
T KOG1090|consen 1629 PPTENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFED------------------------------------ 1672 (1732)
T ss_pred CcccccCcccchhhcchhhcccccceeEecCCccceeeeccccc------------------------------------
Confidence 3367788899999999999999999999965 89999997443
Q ss_pred cccCCCcceeEEccceE-E---EecCCCCCc-eEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 155 AARQCKPFGEIHLKVSS-V---RASKSDDKR-LTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 155 ~~~~~~p~G~I~L~~~s-i---~~~~~d~~r-F~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
.+|+|.|+|.... + .....|.+. |.++|..|+|.|+|.+.-..++|++.||++.
T Consensus 1673 ----t~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1673 ----TKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ----ccccchhhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 3488999996432 2 223455555 5699999999999999999999999999984
No 36
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.04 E-value=2.6e-09 Score=97.97 Aligned_cols=93 Identities=24% Similarity=0.382 Sum_probs=68.5
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
+.+|+|.|... |+-++|+|.|=+++|.|+.....+ ...-+++
T Consensus 3 ikEG~L~K~~~--k~~~~R~~FLFnD~LlY~~~~~~~------------------------------------~~~y~~~ 44 (99)
T cd01220 3 IRQGCLLKLSK--KGLQQRMFFLFSDLLLYTSKSPTD------------------------------------QNSFRIL 44 (99)
T ss_pred eeEEEEEEEeC--CCCceEEEEEccceEEEEEeecCC------------------------------------CceEEEE
Confidence 57999999875 344445555655566666642110 0111377
Q ss_pred eeEEccceEEEecCCC---CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKSD---DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 163 G~I~L~~~si~~~~~d---~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
|.|+|....|.....+ ...|.|.++.|.|.|.|.|.+|+.+||++|+.|.+
T Consensus 45 ~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 45 GHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 9999999988755432 46899999999999999999999999999999975
No 37
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.97 E-value=6.3e-09 Score=90.83 Aligned_cols=87 Identities=32% Similarity=0.492 Sum_probs=69.2
Q ss_pred EEEEEeecCCC----CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCC
Q 003720 85 AGILYKWVNYG----KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (800)
Q Consensus 85 ~G~L~K~~n~~----kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (800)
+|||.+++... +.|++|||+|.++.|.||+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~---------------------------------------- 41 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKE---------------------------------------- 41 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCc----------------------------------------
Confidence 69999988764 6899999999999999999754211
Q ss_pred cc-eeEEccceEEEecCC---CCCceEEEeC---CeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 161 PF-GEIHLKVSSVRASKS---DDKRLTIFTG---TKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 161 p~-G~I~L~~~si~~~~~---d~~rF~I~t~---~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
+. +.+++....+..... .+..|.|.+. .+.++|+|+|.++++.||.||+.|
T Consensus 42 ~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 42 IKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 11 567777766554432 3577899888 899999999999999999999864
No 38
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.80 E-value=3.7e-08 Score=92.96 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceEEEec
Q 003720 96 KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRAS 175 (800)
Q Consensus 96 kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~~ 175 (800)
+.|++||+||.++.|+.||++....... ........|.|..+.....
T Consensus 24 R~Wk~~y~vL~g~~L~~yKDe~~~~~~~---------------------------------~~~~~~~~Isi~~a~~~ia 70 (117)
T cd01230 24 RSWKMFYGILRGLVLYLQKDEHKPGKSL---------------------------------SETELKNAISIHHALATRA 70 (117)
T ss_pred CcceEEEEEEECCEEEEEccCccccccc---------------------------------ccccccceEEeccceeEee
Confidence 5799999999999999999864211000 0011235666766653322
Q ss_pred ---CCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003720 176 ---KSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAAKDLFP 216 (800)
Q Consensus 176 ---~~d~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~a~~~~~ 216 (800)
...+..|.|.++. +.|.|+|.+.+|++.||.+|+.|.+.+.
T Consensus 71 ~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s 115 (117)
T cd01230 71 SDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAFS 115 (117)
T ss_pred ccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 2234568898875 9999999999999999999999998764
No 39
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.78 E-value=3.2e-08 Score=91.33 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=68.8
Q ss_pred CCCcceEEEEEeecCCCCCceeeEEEEeCC-eEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccccc
Q 003720 79 GVSASVAGILYKWVNYGKGWRSRWFVLEDG-VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 79 ~~~~~~~G~L~K~~n~~kgWr~RWFvL~~g-~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
|....++|+|.|+.+.+ +|+|||+|.++ .|.|+.....
T Consensus 10 ge~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~~--------------------------------------- 48 (104)
T PF14593_consen 10 GELILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKKM--------------------------------------- 48 (104)
T ss_dssp T--EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTTT---------------------------------------
T ss_pred CCeEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCCC---------------------------------------
Confidence 67789999999998777 99999999997 8888885321
Q ss_pred CCCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003720 158 QCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~ 215 (800)
..+|+|.+....-.+ ..+...|.|+|+.|+|+|.. ...+...|++||+.++..+
T Consensus 49 --~~KGeI~~~~~l~v~-~k~~~~F~I~tp~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 49 --VLKGEIPWSKELSVE-VKSFKTFFIHTPKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp --EEEEEE--STT-EEE-ECSSSEEEEEETTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred --eECcEEecCCceEEE-EccCCEEEEECCCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 256999998654332 35557999999999999976 4456888999999998754
No 40
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.56 E-value=4.6e-07 Score=81.63 Aligned_cols=89 Identities=25% Similarity=0.330 Sum_probs=67.9
Q ss_pred ceEEEEEeec-CCCCC-ceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCC
Q 003720 83 SVAGILYKWV-NYGKG-WRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (800)
Q Consensus 83 ~~~G~L~K~~-n~~kg-Wr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (800)
+..|||.-.. +.+|| =|.|||||.+.+|+|||+..+ ..
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~ee----------------------------------------KE 41 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEE----------------------------------------KE 41 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeeccccc----------------------------------------cc
Confidence 5689997653 34344 899999999999999998543 12
Q ss_pred cceeEEccceEEEecCC----CCCceEEEeC--------CeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 161 PFGEIHLKVSSVRASKS----DDKRLTIFTG--------TKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 161 p~G~I~L~~~si~~~~~----d~~rF~I~t~--------~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
++|.|+|....++.... ....|.++.+ .|++.|.|+|.++.+.|...+-.|
T Consensus 42 ~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 42 KKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 78999998888775433 2345667754 389999999999999999877655
No 41
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.54 E-value=9.1e-07 Score=81.88 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=74.4
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
+.+|.|.|-. .|+-++|||.|=+++|.|-+.-.. .+.-+..
T Consensus 5 i~eG~L~K~~--rk~~~~R~ffLFnD~LvY~~~~~~-------------------------------------~~~~~~~ 45 (104)
T cd01218 5 VGEGVLTKMC--RKKPKQRQFFLFNDILVYGNIVIS-------------------------------------KKKYNKQ 45 (104)
T ss_pred EecCcEEEee--cCCCceEEEEEecCEEEEEEeecC-------------------------------------CceeeEe
Confidence 5689999987 577999999999999999653100 0112356
Q ss_pred eeEEccceEEEecCCC---CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003720 163 GEIHLKVSSVRASKSD---DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (800)
Q Consensus 163 G~I~L~~~si~~~~~d---~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~ 215 (800)
+.|+|....|.....+ .+.|.|.++.|.|.+.|+|.+++.+||++|+.|++..
T Consensus 46 ~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 46 HILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred eEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 8889988877644332 4789999999999999999999999999999998763
No 42
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=2.9e-07 Score=83.49 Aligned_cols=90 Identities=23% Similarity=0.408 Sum_probs=64.0
Q ss_pred ceEEEEEeecC-CCCCceeeEEEEeCC-----eEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccc
Q 003720 83 SVAGILYKWVN-YGKGWRSRWFVLEDG-----VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAA 156 (800)
Q Consensus 83 ~~~G~L~K~~n-~~kgWr~RWFvL~~g-----~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 156 (800)
..+|||+|.|. ..|.||+|||||.+- .+.=|+.
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~e----------------------------------------- 41 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYRE----------------------------------------- 41 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhh-----------------------------------------
Confidence 47999999987 789999999999841 1222332
Q ss_pred cCCCcceeEEccceEEEecCCCC-----------Cc--eEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 157 RQCKPFGEIHLKVSSVRASKSDD-----------KR--LTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 157 ~~~~p~G~I~L~~~si~~~~~d~-----------~r--F~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
+...|...|.|.+.+|...+..+ .+ |.....+-++.|.++++.||.-||+||=.|..
T Consensus 42 kks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 42 KKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred hcCCchhheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHcC
Confidence 22236777888888877553322 12 33444567889999999999999999988754
No 43
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.38 E-value=1.5e-06 Score=79.91 Aligned_cols=47 Identities=32% Similarity=0.575 Sum_probs=41.9
Q ss_pred eeEEccceEEEecCCCCCceE--EEeCCe--EEEEEcCCHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKSDDKRLT--IFTGTK--TLHLRCISREDRTVWIDALQ 209 (800)
Q Consensus 163 G~I~L~~~si~~~~~d~~rF~--I~t~~r--t~~L~A~s~edr~~Wi~AL~ 209 (800)
-.|.|..|+++..++.++||. |.+.+| ++.|+|+|++++..||+|+.
T Consensus 52 e~~~l~sc~~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 52 ETLTLKSCSRRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eEEeeeeccccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 457899999999999999976 777777 89999999999999999985
No 44
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=98.25 E-value=9.3e-06 Score=76.90 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=59.0
Q ss_pred eEEEEEeec--------C--CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccc
Q 003720 84 VAGILYKWV--------N--YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLG 153 (800)
Q Consensus 84 ~~G~L~K~~--------n--~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~ 153 (800)
.+|||+.+. . ..+.|+.-|.||++++|+.||+....... .....
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~--------------------------~~~~~ 55 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASS--------------------------TPPDI 55 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT---------------------------BS--
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccC--------------------------Ccccc
Confidence 578887631 1 23569999999999999999984310000 00000
Q ss_pred ccccCCCcceeEEccceEEEec---CCCCCceEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 154 FAARQCKPFGEIHLKVSSVRAS---KSDDKRLTIFTG-TKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 154 ~~~~~~~p~G~I~L~~~si~~~---~~d~~rF~I~t~-~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
......+|.+.|.|..+..... ...+.-|.+.++ +..|.|+|.|.+||+.||.+|+.+.
T Consensus 56 ~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 56 QSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp -SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 0012334678899988776543 123455888876 5899999999999999999999875
No 45
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.23 E-value=1.9e-05 Score=74.08 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=63.2
Q ss_pred CcceEEEEE--eecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 81 SASVAGILY--KWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 81 ~~~~~G~L~--K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
|..++|||. |.++..|||+++|.||.+..|+.|....+.+-. | .
T Consensus 1 gt~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~--p--------------------------------~ 46 (122)
T cd01243 1 GTAYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQ--P--------------------------------S 46 (122)
T ss_pred CccceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCC--c--------------------------------c
Confidence 357899996 445666899999999999999999975432100 0 0
Q ss_pred CCcceeEEcc--c---eEEEec-------CCCCCceEEEe-------CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 159 CKPFGEIHLK--V---SSVRAS-------KSDDKRLTIFT-------GTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 159 ~~p~G~I~L~--~---~si~~~-------~~d~~rF~I~t-------~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
..+.-.|+|. . +++..+ +.-++-|.|.+ +..+++|-|+|..|+++|+.||..-..
T Consensus 47 ~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~ 120 (122)
T cd01243 47 VVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHK 120 (122)
T ss_pred CceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHh
Confidence 0022223331 1 122211 11234465544 348899999999999999999987654
No 46
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.14 E-value=9.9e-06 Score=72.39 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=67.5
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeC-CeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLED-GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~-g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
.+.|.+.|+.+.+ +|+|=|+|.| ..|.|+.... ...
T Consensus 2 l~~g~v~Kr~glf--~kkR~LiLTd~PrL~yvdp~~-----------------------------------------~~~ 38 (89)
T cd01262 2 LKIGAVKKRKGLF--AKKRQLILTNGPRLIYVDPVK-----------------------------------------KVV 38 (89)
T ss_pred ceeeeeeehhccc--cceeeEEEecCceEEEEcCCc-----------------------------------------CeE
Confidence 4689999988765 8999999987 6787877421 126
Q ss_pred ceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 162 ~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
+|+|.+...+........+.|.|+|++|+|+|. +.....++|+++|..+.
T Consensus 39 KgeIp~s~~~l~v~~~~~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 39 KGEIPWSDVELRVEVKNSSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred EeEecccccceEEEEecCccEEEECCCceEEEE-CCCCCHHHHHHHHHHHh
Confidence 799999884444445556899999999999994 55688899999998874
No 47
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.09 E-value=3.2e-05 Score=72.61 Aligned_cols=102 Identities=15% Similarity=0.234 Sum_probs=73.5
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
+.+|-|.|-...-+.++.|+|.|=|++|.|.|..... .++.|.. ...-.-+
T Consensus 5 I~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~-----------~~~~g~~------------------~~~y~~k 55 (112)
T cd01261 5 IMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQ-----------PRLPGAS------------------SAEYRLK 55 (112)
T ss_pred cccCcEEEEecccCCcceEEEEEecCeEEEEEeccCc-----------ccccccc------------------cceEEEE
Confidence 5789999877555779999999999999999964320 0111110 0112256
Q ss_pred eeEEccceEEEecCC---CCCceEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKS---DDKRLTIFTG-TKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 163 G~I~L~~~si~~~~~---d~~rF~I~t~-~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
+.|.|....|...+. ..+.|.|.+. ++.|.|+|.|++++.+||+||..+..
T Consensus 56 ~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 56 EKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 778887777663322 2467999885 78999999999999999999998864
No 48
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.02 E-value=2e-06 Score=104.10 Aligned_cols=97 Identities=29% Similarity=0.442 Sum_probs=78.1
Q ss_pred CCcceEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 80 VSASVAGILYKWVN-YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 80 ~~~~~~G~L~K~~n-~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
.+..+.|+|+|++. ..+.|.+|||-.+++.|.|+..-..
T Consensus 272 ~~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~---------------------------------------- 311 (785)
T KOG0521|consen 272 LGYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGAD---------------------------------------- 311 (785)
T ss_pred chhhhhhhhhhhcccchhhHHhhhhhhhcccccccccccc----------------------------------------
Confidence 44678899998865 4788999999999999999885221
Q ss_pred CCcceeEEccceEEEecCCC-CCc--eEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003720 159 CKPFGEIHLKVSSVRASKSD-DKR--LTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (800)
Q Consensus 159 ~~p~G~I~L~~~si~~~~~d-~~r--F~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~ 216 (800)
......++|..|+|+..... ++| |.|++++|+|+|+|+++.++++||.+|+..+...-
T Consensus 312 ~~~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l 372 (785)
T KOG0521|consen 312 AENVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSAL 372 (785)
T ss_pred ccccccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHH
Confidence 00157778999999877554 555 55999999999999999999999999999987644
No 49
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.88 E-value=0.00014 Score=67.35 Aligned_cols=91 Identities=19% Similarity=0.320 Sum_probs=59.7
Q ss_pred eEEEEEee--cCC--CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 84 VAGILYKW--VNY--GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 84 ~~G~L~K~--~n~--~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
++|||.-- ++. -+||+++|.||.+.-|+.|....+..- .
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~-------------------------------------~ 44 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKEN-------------------------------------S 44 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccC-------------------------------------C
Confidence 68999743 344 369999999999999999997543210 0
Q ss_pred CcceeEEccc----e------EEEec-CCCCCceEEEeC--CeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 160 KPFGEIHLKV----S------SVRAS-KSDDKRLTIFTG--TKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 160 ~p~G~I~L~~----~------si~~~-~~d~~rF~I~t~--~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
.|.-+++|.. . .+... +.-++-|.|..+ .++++|-|++..|++.|+.||..-
T Consensus 45 ~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~ 109 (112)
T cd01242 45 TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKK 109 (112)
T ss_pred CcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHh
Confidence 1223333321 1 11111 222455777665 499999999999999999999754
No 50
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.65 E-value=0.0003 Score=65.69 Aligned_cols=88 Identities=16% Similarity=0.277 Sum_probs=65.1
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcce
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (800)
++|||--.++.-+.|||+|++|+...|+||++... .++-.
T Consensus 2 kEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~----------------------------------------skyyK 41 (117)
T cd01239 2 KEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESG----------------------------------------SRYYK 41 (117)
T ss_pred ccceEEEEecCccceeeeEEEecCCeEEEEEcCCC----------------------------------------CeeeE
Confidence 68999999999999999999999999999997432 22445
Q ss_pred eEEccceE-EEec-------CCCCCceEEEeCCeEEEEEcC--------------------CHHHHHHHHHHHHHH
Q 003720 164 EIHLKVSS-VRAS-------KSDDKRLTIFTGTKTLHLRCI--------------------SREDRTVWIDALQAA 211 (800)
Q Consensus 164 ~I~L~~~s-i~~~-------~~d~~rF~I~t~~rt~~L~A~--------------------s~edr~~Wi~AL~~a 211 (800)
+|.|..-. |... ...+.-|.|.|++.+|++-.+ ..+..+.|-.||+.|
T Consensus 42 eIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 42 EIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 55554332 2111 244567999999999999553 345568888888764
No 51
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.64 E-value=0.00013 Score=67.86 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=28.3
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEee
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKI 115 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~ 115 (800)
++|+||-+.-.-|.||+|||+|+..-|+|+-.
T Consensus 2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~K 33 (114)
T cd01259 2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPK 33 (114)
T ss_pred ccceEEEccCCCccceEEEEEEeCCeeEEccC
Confidence 68999988767789999999999999998865
No 52
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.58 E-value=3.6e-05 Score=88.93 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=83.1
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
.....+||+.|-+...|.|++||||+++|...||+.++.. ..
T Consensus 247 e~~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~--------------------------------------~~ 288 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNR--------------------------------------DE 288 (936)
T ss_pred chhhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCc--------------------------------------cc
Confidence 4445789999999999999999999999999999997652 23
Q ss_pred CcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003720 160 KPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~ 216 (800)
+|.|.|++..-.+.+..+..-.|..++.+.+|+|-++|.---.+|+..|+++.....
T Consensus 289 ~p~s~~d~~s~~~~~~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~~ 345 (936)
T KOG0248|consen 289 EPASKIDIRSVTKLEQQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKATT 345 (936)
T ss_pred cccCcccccccceeeccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHHHh
Confidence 477778877776666666667888999999999999999999999999999977643
No 53
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.58 E-value=0.00016 Score=83.71 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=63.2
Q ss_pred CcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCC
Q 003720 81 SASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (800)
Q Consensus 81 ~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (800)
.....|||.|.+...+ |++|||.|.++.++......+++-. ...+
T Consensus 376 Dv~~~G~l~k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~~----------------------------------~~~~ 420 (478)
T PTZ00267 376 DVTHGGYLYKYSSDMR-WKKRYFYIGNGQLRISLSENPENDG----------------------------------VAPK 420 (478)
T ss_pred CcccceEEeccCCCcc-hhhheEEecCCceEEEeccccccCC----------------------------------CCCc
Confidence 3567999999998886 9999999998777776553332111 0001
Q ss_pred cceeEEccceEEE-e--cCCCCCceEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 161 PFGEIHLKVSSVR-A--SKSDDKRLTIFT-GTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 161 p~G~I~L~~~si~-~--~~~d~~rF~I~t-~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
+.....+..+... . ....+..|.|.+ +.+.+.|.|+|.++|+.||.+||.|..
T Consensus 421 ~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 421 SVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred cccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 1122122222221 1 123456677755 556777788999999999999999853
No 54
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.55 E-value=0.00012 Score=87.52 Aligned_cols=98 Identities=16% Similarity=0.375 Sum_probs=71.5
Q ss_pred CCcceEEEEEee--cCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccccc
Q 003720 80 VSASVAGILYKW--VNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 80 ~~~~~~G~L~K~--~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
+.+...|+|+-. +..+..|.|||++|.+|++.|.|-..++ +
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDE-------------------------------------k 1030 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDE-------------------------------------K 1030 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchh-------------------------------------c
Confidence 445567998874 3444569999999999999999974432 2
Q ss_pred CCCcceeEEccceEEEec---C----CCCCceEEEeC-------------Ce-EEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 158 QCKPFGEIHLKVSSVRAS---K----SDDKRLTIFTG-------------TK-TLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~~---~----~d~~rF~I~t~-------------~r-t~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
...|.|.|+|..|+-... . ..++.|.|.+- .| ...|.|+|.++++.|+.+|..+-..
T Consensus 1031 rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1031 RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred ccCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 334899999998874422 1 22346777631 14 6788999999999999999998654
No 55
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.51 E-value=0.0004 Score=82.36 Aligned_cols=96 Identities=15% Similarity=0.323 Sum_probs=63.3
Q ss_pred cceEEEEEeecCC-C-C-CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 82 ASVAGILYKWVNY-G-K-GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 82 ~~~~G~L~K~~n~-~-k-gWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
..++||||--+.. + . --+.|||||.+..|.|||.+..+++.
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~------------------------------------ 47 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQV------------------------------------ 47 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccc------------------------------------
Confidence 4699999987532 2 2 27999999999999999986543311
Q ss_pred CCcceeEEccceEEEec----CCCCCceEEEe------CCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003720 159 CKPFGEIHLKVSSVRAS----KSDDKRLTIFT------GTKTLHLRCISREDRTVWIDALQAAKDLF 215 (800)
Q Consensus 159 ~~p~G~I~L~~~si~~~----~~d~~rF~I~t------~~rt~~L~A~s~edr~~Wi~AL~~a~~~~ 215 (800)
|..+..+....-++. ....+.|+|.+ ..+.+.|-|.+.+|..+||+||+.|++..
T Consensus 48 --pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 48 --PIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred --cceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 212221222221111 11123344433 35789999999999999999999999963
No 56
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.49 E-value=0.00026 Score=65.91 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=59.6
Q ss_pred EEEEeecC----CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 86 GILYKWVN----YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 86 G~L~K~~n----~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
|||..+.. ..+.||+|+++|.++-|..|+...-.+-. |... ....|
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~------------------------w~~p------~~~y~ 52 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVED------------------------WSRP------LYVYK 52 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHH------------------------HhCh------hhhCh
Confidence 88888744 34889999999999999999974321111 1100 00001
Q ss_pred ceeEEccceEEEe----cCCCCCceEEEeCC--eEEEEEcCCHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRA----SKSDDKRLTIFTGT--KTLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 162 ~G~I~L~~~si~~----~~~d~~rF~I~t~~--rt~~L~A~s~edr~~Wi~AL~~ 210 (800)
.-+|--++..... ....+..|.|.+++ .+.+|+.++..|+..|.+||+.
T Consensus 53 L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 53 LYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred hHHhhhheeccCCccCcCCCCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 1100000111000 12445579999997 5899999999999999999985
No 57
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.46 E-value=6.1e-05 Score=85.62 Aligned_cols=97 Identities=28% Similarity=0.369 Sum_probs=70.2
Q ss_pred CcceEEEEE-eec--CCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccccc
Q 003720 81 SASVAGILY-KWV--NYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 81 ~~~~~G~L~-K~~--n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
...++|-|. |+| ..+|+|+-|||.|.+-.|.|.|.+.+++-..
T Consensus 734 qp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~---------------------------------- 779 (851)
T KOG3723|consen 734 QPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDD---------------------------------- 779 (851)
T ss_pred CchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCC----------------------------------
Confidence 348999997 433 3679999999999999999988765432110
Q ss_pred CCCcceeEEccc-eEE------EecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003720 158 QCKPFGEIHLKV-SSV------RASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (800)
Q Consensus 158 ~~~p~G~I~L~~-~si------~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~ 216 (800)
-.|+|.. -++ +..++-++.|.|||..+||.|+|.+++..++|++-|+-|.+-..
T Consensus 780 -----~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 780 -----CPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred -----CCccHHHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 1122211 011 11244567899999999999999999999999999999877543
No 58
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.27 E-value=0.0026 Score=60.76 Aligned_cols=93 Identities=23% Similarity=0.304 Sum_probs=59.2
Q ss_pred EEEEEeecCCC-----CCceeeEEEEeC--CeEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccccc
Q 003720 85 AGILYKWVNYG-----KGWRSRWFVLED--GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 85 ~G~L~K~~n~~-----kgWr~RWFvL~~--g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
-.||+|++..+ ...++|||-|+. ..|+++..... .-...
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~-~~~~~--------------------------------- 57 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPK-SENPS--------------------------------- 57 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCC-ccccc---------------------------------
Confidence 46999998877 679999999976 77777764321 00000
Q ss_pred CCCcceeEEccceEEEecC--C--------CCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 158 QCKPFGEIHLKVSSVRASK--S--------DDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~~~--~--------d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
..-.+.|.|.....+... . -...|.|.++.|++.|-|.|.++.+.|+.||+.-.
T Consensus 58 -~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 58 -ESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred -cccccceEEeeeEEecCCCCCCccccccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 001122333222211110 0 12345588999999999999999999999998653
No 59
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=97.27 E-value=0.00016 Score=85.46 Aligned_cols=122 Identities=19% Similarity=0.300 Sum_probs=86.7
Q ss_pred CCcceEEEEEeecCCCC-CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 80 VSASVAGILYKWVNYGK-GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~k-gWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
.+..++|||.|-..-+. -.++||..+++..|.||.... .
T Consensus 85 sp~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k----------------------------------------~ 124 (1186)
T KOG1117|consen 85 SPVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPK----------------------------------------D 124 (1186)
T ss_pred CchhhcchhhccCcCcccccCccceecCCCCccccCCCC----------------------------------------C
Confidence 34689999999433332 289999999999999999632 2
Q ss_pred CCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHccc-cccCCCCCCCccccccHHHH
Q 003720 159 CKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPR-LLTSTDFSPSEDVVVSTERL 237 (800)
Q Consensus 159 ~~p~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~~-~~~~~~~~~~~~~~~s~e~l 237 (800)
..+.|.|.+...+.. ....+..|.++++.|+|.|++++..+|..||.+|+++...... .......+|...........
T Consensus 125 py~k~~i~va~is~v-~~~gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~Q~l~~ap~pp~pP~raG~lelrg~ 203 (1186)
T KOG1117|consen 125 PYSKGPIPVAAISAV-RNFGDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKEQRLRSAPPPPVPPPRAGWLELRGF 203 (1186)
T ss_pred CCCCCceeeehhhhh-hhccCceEEEEecceEEEEecCCcccceeeechhhhcchhhhhccCCCCCCCCCCccchhcccc
Confidence 235678887766654 3567889999999999999999999999999999999655311 11112233444455555555
Q ss_pred HHHHh
Q 003720 238 RLRLL 242 (800)
Q Consensus 238 r~rL~ 242 (800)
+.|+.
T Consensus 204 kak~f 208 (1186)
T KOG1117|consen 204 KAKLF 208 (1186)
T ss_pred cccee
Confidence 56654
No 60
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.24 E-value=0.00054 Score=80.10 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCCcceEEEEEeecCCC------CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccc
Q 003720 79 GVSASVAGILYKWVNYG------KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRL 152 (800)
Q Consensus 79 ~~~~~~~G~L~K~~n~~------kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~ 152 (800)
-.++.++|.|+++..-+ +..|+|||-|.+..|+|.|+.+.
T Consensus 561 ~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~---------------------------------- 606 (800)
T KOG2059|consen 561 QEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK---------------------------------- 606 (800)
T ss_pred CCCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCcc----------------------------------
Confidence 35666666666543222 45789999999999999998543
Q ss_pred cccccCCCcceeEEccceEEEec-----CCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003720 153 GFAARQCKPFGEIHLKVSSVRAS-----KSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPR 217 (800)
Q Consensus 153 ~~~~~~~~p~G~I~L~~~si~~~-----~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~~ 217 (800)
+|.+.|.|...-..+. -...+-|.|++.+|+++|+|.+-.|..+|++||..+..+-+.
T Consensus 607 -------q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~ 669 (800)
T KOG2059|consen 607 -------QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQN 669 (800)
T ss_pred -------CcccceeHHHHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHhccCcc
Confidence 3667777764332221 123456889888999999999999999999999999776443
No 61
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.14 E-value=0.0054 Score=56.30 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=65.7
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
.++|.|.-++. =+.|+..|=+.+|.|.|..+. + -.-+
T Consensus 5 lleg~l~~~~~----~~eR~vFLFe~~ll~~K~~~~-~--------------------------------------y~~K 41 (97)
T cd01222 5 LLEGRFREHGG----GKPRLLFLFQTMLLIAKPRGD-K--------------------------------------YQFK 41 (97)
T ss_pred eeeceEEeecC----CCceEEEEecccEEEEEecCC-e--------------------------------------eEEE
Confidence 57888874443 347999999999999996442 1 1145
Q ss_pred eeEEccceEEEec-CCCCCceEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRAS-KSDDKRLTIFTGT---KTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 163 G~I~L~~~si~~~-~~d~~rF~I~t~~---rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
..|.+..-.+.++ ..|+++|.|.... ++|.|+|.|.++++.||++|+.+.
T Consensus 42 ~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 42 AYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred EEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 6677776666665 3468999986543 799999999999999999999874
No 62
>PLN02866 phospholipase D
Probab=97.01 E-value=0.0049 Score=76.09 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=70.9
Q ss_pred CCcceEEEEEeec-----C------CC---------CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccch
Q 003720 80 VSASVAGILYKWV-----N------YG---------KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSI 139 (800)
Q Consensus 80 ~~~~~~G~L~K~~-----n------~~---------kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~ 139 (800)
.+..++|+++|+. . .. -+|++|||||.++.|.|.++....++. ++-++-..
T Consensus 180 g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~-------~v~lfD~~-- 250 (1068)
T PLN02866 180 GPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPL-------DIIVFDVL-- 250 (1068)
T ss_pred CCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCcee-------EEEEEecc--
Confidence 4577999999982 1 00 359999999999999999764443322 11111110
Q ss_pred hhhhccccccccccccccCCCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003720 140 RFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (800)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~ 215 (800)
.. .+.+--|.|.|..- +.+...-...|.|.+++|++.|+|.|......|+.||+.+....
T Consensus 251 -----~~----------~~~~~~~~~~~~~~-~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~ 310 (1068)
T PLN02866 251 -----PA----------SNGNGEGQISLAKE-IKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRP 310 (1068)
T ss_pred -----cc----------cccCCCcceeeccc-ccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 00 00011244444322 11112234467899999999999999999999999999997543
No 63
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.82 E-value=0.0034 Score=60.05 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=50.5
Q ss_pred ceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceEEEe---
Q 003720 98 WRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRA--- 174 (800)
Q Consensus 98 Wr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~--- 174 (800)
-++||+.|=+++|.|-|.+..++..+. +--+++.|.+.......
T Consensus 27 ~~~vylfLFnDlLl~tkkK~~~~f~V~---------------------------------dy~~r~~l~V~~~e~~~~~~ 73 (125)
T cd01221 27 ARTIYLFLFNDLLLITKKKLGSTFVVF---------------------------------DYAPRSFLRVEKIEPDNQKI 73 (125)
T ss_pred CCcEEEEEecceEEEEEecCCCeEEEE---------------------------------eeccccceEEeecccccccc
Confidence 468999999999999997655443321 11133333333222110
Q ss_pred -----cCCCCCceEEE-----eC-CeEEEEEcCCHHHHHHHHHHHH
Q 003720 175 -----SKSDDKRLTIF-----TG-TKTLHLRCISREDRTVWIDALQ 209 (800)
Q Consensus 175 -----~~~d~~rF~I~-----t~-~rt~~L~A~s~edr~~Wi~AL~ 209 (800)
.......|.|. .| ++.+.|+|+|+.||.+||+||.
T Consensus 74 ~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 74 PLGSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 01335667764 22 4789999999999999999984
No 64
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.73 E-value=0.02 Score=53.56 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=66.0
Q ss_pred ceEEEEEeecCCCCCc-eeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 83 SVAGILYKWVNYGKGW-RSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgW-r~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
+++|-|.+-+ ..+|| +.|.|.|=|++|.|.|..-. . +..-.-
T Consensus 3 i~~Gel~~~s-~~~g~~q~R~~FLFD~~LI~CKkd~~---r---------------------------------~~~~~y 45 (109)
T cd01224 3 FLQGEATRQK-QNKGWNSSRVLFLFDHQMVLCKKDLI---R---------------------------------RDHLYY 45 (109)
T ss_pred eEeeeEEEEe-cccCCcccEEEEEecceEEEEecccc---c---------------------------------CCcEEE
Confidence 5788888766 33454 67999999999999994210 0 001125
Q ss_pred ceeEEccceEEEecCCC---------CCceEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRASKSD---------DKRLTIFTG--TKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 162 ~G~I~L~~~si~~~~~d---------~~rF~I~t~--~rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
+|.|.|..+.|...+.. .+.|.|... .+.|.|+|.|+++.+.||+||..-+
T Consensus 46 Kgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~er 107 (109)
T cd01224 46 KGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFALER 107 (109)
T ss_pred EEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHHhh
Confidence 68999998888744222 234666654 4789999999999999999998654
No 65
>PF15406 PH_6: Pleckstrin homology domain
Probab=96.51 E-value=0.0057 Score=56.64 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=41.5
Q ss_pred cceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 003720 161 PFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 161 p~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~ 210 (800)
|.|.|+|..++-. .......|.+...+....|+|.|..||+.||.+|.+
T Consensus 63 P~GiinLadase~-~~~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 63 PSGIINLADASEP-EKDGSNKFHFKIKGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred CcceEehhhcccc-ccCCCceEEEEeCCceeeeecCCHHHhccHHHHhhc
Confidence 8899999776644 355667899888999999999999999999999864
No 66
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=96.36 E-value=0.0067 Score=69.84 Aligned_cols=100 Identities=24% Similarity=0.454 Sum_probs=71.0
Q ss_pred CCcceEEEEEee--cCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccccc
Q 003720 80 VSASVAGILYKW--VNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 80 ~~~~~~G~L~K~--~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
.+.+++||||-| ...++.|-+-||+.....-.+ .|.+..++ .+.
T Consensus 263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~---------TMvp~~qk-------------------------~g~ 308 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIF---------TMVPANQK-------------------------TGT 308 (812)
T ss_pred CCcccceeeeehhhhhccchhhhheeEeecccceE---------EEeecccC-------------------------CCC
Confidence 345899999975 467899999999985532111 11111000 001
Q ss_pred CCCcceeEEccceEEEecCCCCCceE--EEeCCe--EEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 158 QCKPFGEIHLKVSSVRASKSDDKRLT--IFTGTK--TLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~~~~d~~rF~--I~t~~r--t~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
.-.+..++.|+.|+-+..++-++||+ |-+..| ++.++|-|++||..||+|+-.+.-
T Consensus 309 k~g~~~~~~lKsC~RRktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ep 368 (812)
T KOG1451|consen 309 KMGQTATFKLKSCSRRKTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAEP 368 (812)
T ss_pred cCCCcceEEehhhccCcccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCCc
Confidence 11266788999999888889999987 666665 899999999999999999987733
No 67
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.26 E-value=0.0038 Score=57.76 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=61.2
Q ss_pred cceEEEEEeecCCC-CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCC
Q 003720 82 ASVAGILYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (800)
Q Consensus 82 ~~~~G~L~K~~n~~-kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (800)
.++.|++.|-|+.+ ..|++|||-|..+.|-.|...+..+.+ +|-
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~e----------Li~------------------------- 47 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKPE----------LIT------------------------- 47 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCCc----------EEE-------------------------
Confidence 37899999999887 559999999999999987432211111 000
Q ss_pred cceeEEccceE--EEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003720 161 PFGEIHLKVSS--VRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (800)
Q Consensus 161 p~G~I~L~~~s--i~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~ 215 (800)
.-++...+ ....+.+.|--...-+.+.|.|++++.-+...|...|+.|-...
T Consensus 48 ---M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~S 101 (116)
T cd01240 48 ---MDQIEDVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRES 101 (116)
T ss_pred ---eehhhhcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 00111111 11113333322234467889999999999999999999885543
No 68
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.0053 Score=70.37 Aligned_cols=108 Identities=18% Similarity=0.309 Sum_probs=68.2
Q ss_pred CCCcceEEEEEee---------cCCC-CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccc
Q 003720 79 GVSASVAGILYKW---------VNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWS 148 (800)
Q Consensus 79 ~~~~~~~G~L~K~---------~n~~-kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~ 148 (800)
++..-+.|+|..+ +-.| +|||.-|-||++-+||+-|++-...-.+. +.+ ++.
T Consensus 503 sa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kals----------e~~----lkn---- 564 (774)
T KOG0932|consen 503 SAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALS----------ESD----LKN---- 564 (774)
T ss_pred CchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchh----------hhh----hhh----
Confidence 5666788888653 3344 56999999999999999887543110000 000 000
Q ss_pred cccccccccCCCcceeEEccceEEEec-CCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003720 149 SHRLGFAARQCKPFGEIHLKVSSVRAS-KSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAAKDLFPR 217 (800)
Q Consensus 149 ~~~~~~~~~~~~p~G~I~L~~~si~~~-~~d~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~a~~~~~~ 217 (800)
+ -.||-..++-... .....-|.+.|.. |.|.|+|.+.++|+.||..|+-+.+.|.-
T Consensus 565 ------------a-vsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSa 622 (774)
T KOG0932|consen 565 ------------A-VSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSA 622 (774)
T ss_pred ------------h-hhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccC
Confidence 0 1122222221101 2234568888865 99999999999999999999999998764
No 69
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=95.72 E-value=0.03 Score=64.14 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=32.6
Q ss_pred CCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEee
Q 003720 79 GVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKI 115 (800)
Q Consensus 79 ~~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~ 115 (800)
+....|.|+||-+..--|+||+-||||+.--|||+..
T Consensus 314 ~~~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K 350 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTK 350 (622)
T ss_pred CCCccccceeeecccccccceeEEEEEecCcceEccC
Confidence 3566899999999888899999999999988999865
No 70
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.44 E-value=0.02 Score=66.21 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=74.7
Q ss_pred CCCCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccc
Q 003720 77 GGGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAA 156 (800)
Q Consensus 77 ~~~~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 156 (800)
++|-...++|.|+|-......-+.||.+|=++.|.|.+-+-. . -|
T Consensus 267 ~PsreLiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~---~-----------~~--------------------- 311 (623)
T KOG4424|consen 267 SPSRELIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKR---L-----------PG--------------------- 311 (623)
T ss_pred CcHHHHhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhh---c-----------cc---------------------
Confidence 345556799999999877677999999999999999885321 1 00
Q ss_pred cCCCcceeEEccceEEEecCCC--CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003720 157 RQCKPFGEIHLKVSSVRASKSD--DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (800)
Q Consensus 157 ~~~~p~G~I~L~~~si~~~~~d--~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~ 216 (800)
..-.++-.+.+....+.+.... ...|.+....|.+.|.|.|.++..+||++|++|++.+.
T Consensus 312 ~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~k 373 (623)
T KOG4424|consen 312 SKYEVRARCSISHMQVQEDDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHK 373 (623)
T ss_pred ceeccceeeccCcchhcccccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHH
Confidence 0011233334444444433333 45677777799999999999999999999999988755
No 71
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.38 E-value=0.26 Score=46.68 Aligned_cols=52 Identities=13% Similarity=0.392 Sum_probs=41.1
Q ss_pred ceeEEccceEEEec-CCCCCceEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRAS-KSDDKRLTIFTGT-----KTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 162 ~G~I~L~~~si~~~-~~d~~rF~I~t~~-----rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
+..|.|..-.+.+. +.|+++|.|...+ .+|.|+|.|.+.+++||..|+.+.+
T Consensus 56 K~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 56 KSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 46666666666655 5788999986543 6899999999999999999998743
No 72
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.17 E-value=0.22 Score=51.01 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=29.2
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEee
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKI 115 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~ 115 (800)
|+|+||.+...-..++++++||-.|.|.-|..
T Consensus 1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~ 32 (185)
T PF15404_consen 1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQL 32 (185)
T ss_pred CCceeeecCCCCCCceEEEEEEeCCEEEEEEE
Confidence 57999999888888999999999999999987
No 73
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=94.73 E-value=0.012 Score=67.80 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=30.1
Q ss_pred CCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 179 DKRLTIFTGT-KTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 179 ~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
+..|.|+..+ .+.||.|.+.+||++||+||+.-+-.
T Consensus 445 de~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIla 481 (749)
T KOG0705|consen 445 DECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILA 481 (749)
T ss_pred cceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHH
Confidence 3468887764 89999999999999999999986543
No 74
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.62 E-value=0.3 Score=45.14 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=40.1
Q ss_pred ceeEEccceEEE---ecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVR---ASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 162 ~G~I~L~~~si~---~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
..++.|..-.+. .++.-.+.|.|.++.+.+.++|+|.++..+||..|+.|+.
T Consensus 45 ~~~~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 45 ESTYSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred EEEEehHHeEEEecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHhc
Confidence 456666544443 2223346799999999999999999999999999999974
No 75
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=94.61 E-value=0.1 Score=61.09 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=29.7
Q ss_pred CCceEE-EeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 179 DKRLTI-FTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 179 ~~rF~I-~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
..-|.+ ++++|.+-|.|.+.++|+.||.+||.+..
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 445665 56789999999999999999999999854
No 76
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.35 E-value=0.23 Score=45.32 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=62.3
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
+.+|.|.|-. -+.=|.|=|.|=+++|.|-+..... + +....-++.
T Consensus 4 v~eg~lvel~--~~~rK~R~~FLFnDlLvc~~ik~~~------------------------------~---~k~~kY~~~ 48 (96)
T cd01228 4 VKDSFLVELV--EGSRKLRHLFLFTDVLLCAKLKKTS------------------------------R---GKHQQYDCK 48 (96)
T ss_pred cccceeeeeh--hCCCcceEEEeeccEEEEEEeeecc------------------------------C---cccccccee
Confidence 4578888866 2446889999999999999874210 0 001222355
Q ss_pred eeEEccceEEEecCCCCCceEE-EeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRASKSDDKRLTI-FTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 163 G~I~L~~~si~~~~~d~~rF~I-~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
=-|+|..-.+... .|.+ .+++|+|.+.|.|..||.+||++|+.-
T Consensus 49 w~IPL~dl~~~~~-----~~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 49 WYIPLADLSFPSE-----PFRIHNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred EEEEhHHheecch-----hhhccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 6777876665432 2554 568999999999999999999999764
No 77
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=93.76 E-value=0.18 Score=60.88 Aligned_cols=91 Identities=21% Similarity=0.379 Sum_probs=63.8
Q ss_pred CcceEEEEEeecCCCCC----------ceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccc
Q 003720 81 SASVAGILYKWVNYGKG----------WRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSH 150 (800)
Q Consensus 81 ~~~~~G~L~K~~n~~kg----------Wr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~ 150 (800)
...++|.||+.-..+++ --++|+||.+|.|+||.....
T Consensus 491 s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S-------------------------------- 538 (1186)
T KOG1117|consen 491 STFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKS-------------------------------- 538 (1186)
T ss_pred cccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCC--------------------------------
Confidence 45678999997544422 357999999999999997432
Q ss_pred cccccccCCCcceeEEccceE-EEecCCCCC-------ceEEEe-CCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 151 RLGFAARQCKPFGEIHLKVSS-VRASKSDDK-------RLTIFT-GTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 151 ~~~~~~~~~~p~G~I~L~~~s-i~~~~~d~~-------rF~I~t-~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
..|.|.|+..... +.....|.. .|.|.. +.|.|+|-+++.++...|..|+...
T Consensus 539 --------~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 539 --------TTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred --------CCCCceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHh
Confidence 1277888875332 222333322 234444 6899999999999999999998554
No 78
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=93.76 E-value=0.021 Score=66.02 Aligned_cols=92 Identities=24% Similarity=0.399 Sum_probs=63.9
Q ss_pred cceEEEEEeec-CCCCCceeeEEEEeCC-----eEEEEeecCCCccccCcccCCCceeecccchhhhhcccccccccccc
Q 003720 82 ASVAGILYKWV-NYGKGWRSRWFVLEDG-----VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (800)
Q Consensus 82 ~~~~G~L~K~~-n~~kgWr~RWFvL~~g-----~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 155 (800)
-..+||||--| |..|.||+|||||-.- .++-|+.+
T Consensus 464 mkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrek--------------------------------------- 504 (1218)
T KOG3543|consen 464 MKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREK--------------------------------------- 504 (1218)
T ss_pred cccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhc---------------------------------------
Confidence 45689999865 5669999999999541 12223321
Q ss_pred ccCCCcceeEEccceEEEecCCCC-----Cc-eEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 156 ARQCKPFGEIHLKVSSVRASKSDD-----KR-LTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~~~~d~-----~r-F~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
...|..-|.|.+.+|...+..+ +. |.-+-.+.+..|..+++.||.-|++|+-.|...
T Consensus 505 --kaepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgq 567 (1218)
T KOG3543|consen 505 --KAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQ 567 (1218)
T ss_pred --ccChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCC
Confidence 1226677888888887554333 22 334445678899999999999999999888664
No 79
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=92.81 E-value=0.024 Score=67.80 Aligned_cols=95 Identities=21% Similarity=0.379 Sum_probs=68.7
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
+...++|+|..+-..-.||++=|.|..+-+|++||++.++-
T Consensus 922 ~e~qLsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~--------------------------------------- 962 (1036)
T KOG3531|consen 922 VENQLSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSE--------------------------------------- 962 (1036)
T ss_pred HHhhhhHHHHHHhhccccceeeeeeecceeeEeeccccccc---------------------------------------
Confidence 44568899975433345899999999999999999986532
Q ss_pred CcceeEEccceEEEecC-----CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 160 KPFGEIHLKVSSVRASK-----SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 160 ~p~G~I~L~~~si~~~~-----~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
+..++.|-+.++.... ..+.-|.+.-..-.|.|+|++.-.-++||+.|+.+-..
T Consensus 963 -~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a~~s 1021 (1036)
T KOG3531|consen 963 -PLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDAPSS 1021 (1036)
T ss_pred -ccccccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcCCcc
Confidence 3444455554443221 12334667777778999999999999999999998554
No 80
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.80 E-value=1.4 Score=42.79 Aligned_cols=54 Identities=13% Similarity=0.310 Sum_probs=42.6
Q ss_pred cceeEEccceEEEec-CCCCCceEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 161 PFGEIHLKVSSVRAS-KSDDKRLTIFTGT--KTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 161 p~G~I~L~~~si~~~-~~d~~rF~I~t~~--rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
-+..|.|..-.+.++ ..|+++|.|.+.. .+|.|+|.|.+.++.|+..|...-..
T Consensus 61 yK~~ikls~lglte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 61 FKQSLKMTAVGITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred EeeeEEeecccccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 346666666666655 5678899987754 58999999999999999999988654
No 81
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=92.51 E-value=0.056 Score=63.53 Aligned_cols=90 Identities=7% Similarity=-0.243 Sum_probs=60.6
Q ss_pred CCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 79 GVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 79 ~~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
..+ ...|+|.|+-..+|.||.|||++.+|++.||+++-+
T Consensus 257 ~~~-s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d---------------------------------------- 295 (936)
T KOG0248|consen 257 QLT-SRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKID---------------------------------------- 295 (936)
T ss_pred cch-HHHHHHHhHheeeccceEEEEEcCCCccccccCccc----------------------------------------
Confidence 345 677899888889999999999999999999997432
Q ss_pred CCcceeEEccc-eEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 159 CKPFGEIHLKV-SSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 159 ~~p~G~I~L~~-~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
++.|.+-+.. +++.-. -...+-...+-+-+++|-++...-.++||++++..
T Consensus 296 -~~s~~~~~~~~~s~~fq-li~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~~~~ 347 (936)
T KOG0248|consen 296 -IRSVTKLEQQGAAYAFQ-LITSTDKMNFMTESERTTHDWVTILSAAIKATTLR 347 (936)
T ss_pred -ccccceeeccchhHHhh-hhhhceeEEEeccChhhhhhhHHHHHHHHHHHhcc
Confidence 1233333322 222111 00111223334456788899999999999999876
No 82
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.04 E-value=0.75 Score=43.16 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=28.5
Q ss_pred CCCCceEEEeCC----eEEEEEcCCHHHHHHHHHHHHH
Q 003720 177 SDDKRLTIFTGT----KTLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 177 ~d~~rF~I~t~~----rt~~L~A~s~edr~~Wi~AL~~ 210 (800)
..++-|+|+-+. +++||-|+|.++++.|++.|+.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 455778876654 6999999999999999999974
No 83
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.97 E-value=2.5 Score=39.80 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceEEEe
Q 003720 95 GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRA 174 (800)
Q Consensus 95 ~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~ 174 (800)
...=+.|||+|-..+|........ . .+-.-.|.++|+.-+|..
T Consensus 25 ~qe~~eRyLvLFp~~LlilS~s~r---------~----------------------------sGf~yqGkLPL~~i~v~~ 67 (111)
T cd01225 25 GEEKRERYLVLFPNVLLMLSASPR---------M----------------------------SGFIYQGKLPLTGIIVTR 67 (111)
T ss_pred ccccceeEEEEcCceEEEEEcCCC---------c----------------------------cceEEeeeecccccEEec
Confidence 344678999999999988774211 0 111246889998888873
Q ss_pred -c--CCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHH
Q 003720 175 -S--KSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQA 210 (800)
Q Consensus 175 -~--~~d~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~ 210 (800)
. +...+.|.|.-+. -++.+-|.+.+|.++||..|+.
T Consensus 68 lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~ 107 (111)
T cd01225 68 LEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNA 107 (111)
T ss_pred hHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHh
Confidence 1 3334678887665 6788889999999999999986
No 84
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.76 E-value=4 Score=38.79 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=56.1
Q ss_pred EEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCccee
Q 003720 85 AGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGE 164 (800)
Q Consensus 85 ~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~ 164 (800)
-|-|.-....-+.=+.||..|-|++|...|..+... | ...-.-+..
T Consensus 7 DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~--------------~--------------------~~~Y~~Ke~ 52 (116)
T cd01223 7 DGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNT--------------G--------------------DMQYTYKDI 52 (116)
T ss_pred CCceEEeEeccCCCceeEEEEecceEEEEEecCCCC--------------C--------------------CccEEhHHh
Confidence 344443332223356899999999999999754310 0 000112233
Q ss_pred EEccceEEEecC---CC--CCc----eEEEe--CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 165 IHLKVSSVRASK---SD--DKR----LTIFT--GTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 165 I~L~~~si~~~~---~d--~~r----F~I~t--~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
+.|....|.... .+ +++ |.|.. +...|.|.|.|++++..||+||..|+.
T Consensus 53 ~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 53 HDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred hhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 444444444332 22 223 33443 336799999999999999999999975
No 85
>PF15408 PH_7: Pleckstrin homology domain
Probab=87.92 E-value=0.25 Score=44.07 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=24.8
Q ss_pred EEEEEeecCCCCCceeeEEEEeCCeEEEEeecCC
Q 003720 85 AGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGP 118 (800)
Q Consensus 85 ~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~ 118 (800)
+||||.--. ..-|+|+.+|.+..|.+|..++.
T Consensus 1 EGYLY~~E~--~si~rRF~~L~~K~~~~~~~KGG 32 (104)
T PF15408_consen 1 EGYLYRDED--SSIQRRFVMLRSKQFNMYEDKGG 32 (104)
T ss_pred CCeEEEecc--chHHHHHHhhhhceeEEecccCC
Confidence 588986421 23689999999999999998765
No 86
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=78.20 E-value=0.11 Score=62.33 Aligned_cols=90 Identities=17% Similarity=0.254 Sum_probs=68.6
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCe-EEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcc
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGV-LSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWr~RWFvL~~g~-L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (800)
..|.+.++.|-...|+.|+|.+.+.. +.|-++... ..+
T Consensus 4 ~rgl~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g-----------------------------------------~~~ 42 (1099)
T KOG1170|consen 4 TRGLDNDVDNEREAWKQSILRAKDRMPEKVAKTASG-----------------------------------------PLF 42 (1099)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHhccCC-----------------------------------------ccH
Confidence 45677777777788999999998876 444443110 134
Q ss_pred eeEEccceEEEec--CCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 163 GEIHLKVSSVRAS--KSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 163 G~I~L~~~si~~~--~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
.++.|..+.+.++ ......|+|+|+-|+..++|++..++..||.|++.....
T Consensus 43 ~~~d~t~a~~~eSs~~n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q~~ 96 (1099)
T KOG1170|consen 43 ALLDLTSAHVAESSTNNPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQHL 96 (1099)
T ss_pred HHHhcccccccccccCCCCCCeeEecccHHhhhhccchhHHHHhhccccchhhc
Confidence 6667777777766 334567999999999999999999999999999988664
No 87
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=77.74 E-value=1.4 Score=52.23 Aligned_cols=37 Identities=30% Similarity=0.553 Sum_probs=29.7
Q ss_pred cceEEEEEeec--CCC-CCceeeEEEEeCCeEEEEeecCC
Q 003720 82 ASVAGILYKWV--NYG-KGWRSRWFVLEDGVLSYYKIHGP 118 (800)
Q Consensus 82 ~~~~G~L~K~~--n~~-kgWr~RWFvL~~g~L~YYk~~~~ 118 (800)
.-++|||++.. +++ ..|++=||||.|..|+.|+.+..
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~ 601 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRV 601 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhh
Confidence 45789998753 334 34999999999999999998765
No 88
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=72.62 E-value=2.5 Score=47.40 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=58.6
Q ss_pred eEEEEEeecCCC--CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCc
Q 003720 84 VAGILYKWVNYG--KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 84 ~~G~L~K~~n~~--kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
.=|||-++...+ +.|++-+.+|.+.-|..|.+-.-.+ ..|++.
T Consensus 294 HiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~k------------------------eaws~P----------- 338 (506)
T KOG3551|consen 294 HIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTK------------------------EAWSRP----------- 338 (506)
T ss_pred hhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhH------------------------HHhcCh-----------
Confidence 459999986443 4599999999998888888633211 111111
Q ss_pred ceeEEccceEEE--------ecCCCCCceEEEeCC----eEEEEEcCCHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVR--------ASKSDDKRLTIFTGT----KTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 162 ~G~I~L~~~si~--------~~~~d~~rF~I~t~~----rt~~L~A~s~edr~~Wi~AL~~a~ 212 (800)
.-+-.|-..-+. ....-+..|.+.||+ +|+.||++|..|+.+|..+|..-.
T Consensus 339 ~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGc 401 (506)
T KOG3551|consen 339 RHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGC 401 (506)
T ss_pred hhhhhhhhhhheecCCCCCCCcCCceEEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHH
Confidence 111111100000 001122468888887 589999999999999999986553
No 89
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=72.47 E-value=0.067 Score=59.17 Aligned_cols=78 Identities=27% Similarity=0.492 Sum_probs=60.7
Q ss_pred CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceEEE--e
Q 003720 97 GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVR--A 174 (800)
Q Consensus 97 gWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~--~ 174 (800)
.|++-||||.+..|.||.......+. ..-|+|+|..|.-. .
T Consensus 34 ~~~k~~~~~~~~~~~~~~d~~A~~~~-------------------------------------~L~~~~~LR~C~~v~e~ 76 (593)
T KOG4807|consen 34 QWKKHWFVLTDSSLKYYRDSTAEEAD-------------------------------------ELDGEIDLRSCTDVTEY 76 (593)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc-------------------------------------cCCccccHHHHHHHHHH
Confidence 49999999999999999974321111 13489999888622 1
Q ss_pred cCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 175 SKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 175 ~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
+..-+-.|.|++-...|.|.|-+.-=+..||.|+...
T Consensus 77 a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT 113 (593)
T KOG4807|consen 77 AVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKT 113 (593)
T ss_pred HHHhccceeecccchhhhhHHHHHHHHHHHHHHHHhc
Confidence 2445567899999999999999999999999999855
No 90
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.77 E-value=1.2 Score=51.86 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=38.9
Q ss_pred cceeEEccceEEEecCCCC----CceEEE---eCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 161 PFGEIHLKVSSVRASKSDD----KRLTIF---TGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 161 p~G~I~L~~~si~~~~~d~----~rF~I~---t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
|.+.|.|+.|.+.+...+. ..|.|. .++..++|||++++.-.+||.|-+.|..
T Consensus 400 p~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLASK 459 (664)
T KOG3727|consen 400 PAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLASK 459 (664)
T ss_pred CCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHhhc
Confidence 6677888888776654332 223332 3578999999999999999999888744
No 91
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=64.69 E-value=7.7 Score=45.78 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=63.9
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEE---eCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccc
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVL---EDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAA 156 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWr~RWFvL---~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 156 (800)
.+..+++.|.+--..+++|..-|++. ++-+++-|....+ +
T Consensus 495 ~~~~~~s~l~~~~~~~~~g~~a~~~vP~~d~~~~~~Yg~~qD--v----------------------------------- 537 (623)
T KOG4424|consen 495 KENVICSHLKYMEAAGKTGILAWSVVPKSDPLVDYSYGSPQD--V----------------------------------- 537 (623)
T ss_pred CCceehhhHHHHhhcCccceeeeeeccCCCCccccccCCccc--c-----------------------------------
Confidence 44567777776555778899999998 4578888876332 1
Q ss_pred cCCCcceeEEccceEEEecCC----CC-CceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 157 RQCKPFGEIHLKVSSVRASKS----DD-KRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 157 ~~~~p~G~I~L~~~si~~~~~----d~-~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
.....|.|..+.+..... |- .-|.++.....+||.|+|.+-.+.|++.|..|..
T Consensus 538 ---~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 538 ---RAQATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVS 596 (623)
T ss_pred ---ccccccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhc
Confidence 134566666666542111 11 1233455567999999999999999999998854
No 92
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=63.40 E-value=8.9 Score=37.37 Aligned_cols=34 Identities=21% Similarity=0.077 Sum_probs=13.9
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeec
Q 003720 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIH 116 (800)
Q Consensus 83 ~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~ 116 (800)
+..|-|.|++.....|-.=-..|=|+.|..-|.+
T Consensus 2 i~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k 35 (135)
T PF15405_consen 2 IYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPK 35 (135)
T ss_dssp ---------------S-EEEEEEESSEEEEEEEE
T ss_pred ccccccccccccccccceeEEEeeccEEEEEEEE
Confidence 4689999998888889877777888888877764
No 93
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=62.70 E-value=12 Score=44.10 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeC-CeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVLED-GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWr~RWFvL~~-g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
....+.|.|.|+-..+ =|+|.|+|.+ +.|.|+.- .+.
T Consensus 449 ~~i~k~~~l~k~~~lf--~rkr~lllTn~~rll~~~~---~~~------------------------------------- 486 (604)
T KOG0592|consen 449 SLILKEGALEKRQGLF--ARKRMLLLTNGPRLLYVDP---QNL------------------------------------- 486 (604)
T ss_pred hhHHhHHHHHhhhhhh--hceeEEEecCCCeEEEEec---ccc-------------------------------------
Confidence 4445677777764444 4679999976 67777772 111
Q ss_pred CCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003720 159 CKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (800)
Q Consensus 159 ~~p~G~I~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~ 216 (800)
..+|+|.++.+... .......|.|+|++|+|+|-- =......|.+||..++...+
T Consensus 487 -~lk~eip~~~~~~~-e~~n~~~~~i~TP~k~~~l~d-~~~~as~w~~ai~~~~~~~~ 541 (604)
T KOG0592|consen 487 -VLKGEIPWSPDLRV-ELKNSSTFFIHTPNKVYYLED-PEQRASVWCKAIETVRKRYS 541 (604)
T ss_pred -eeccccccCcccce-eeccCcceEEECCccceeccC-cccchhHHHHhhhhhhhccc
Confidence 14577777764332 345567899999999999954 44567889999999966544
No 94
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=60.04 E-value=9.8 Score=48.42 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=46.1
Q ss_pred ceeEEccceEEEecCCCCCceEEE-eC---CeEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003720 162 FGEIHLKVSSVRASKSDDKRLTIF-TG---TKTLHLRCISREDRTVWIDALQAAKDLFPR 217 (800)
Q Consensus 162 ~G~I~L~~~si~~~~~d~~rF~I~-t~---~rt~~L~A~s~edr~~Wi~AL~~a~~~~~~ 217 (800)
..+|.|..-.+++...|.+.|.|+ ++ -..|.|.|.|.+||+.||+-|+.+....++
T Consensus 667 spVisL~~livRevAtd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 667 SPVISLQKLIVREVATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred CCceehHHHHHHHHhccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 477888877666667788887754 44 379999999999999999999999998876
No 95
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=50.35 E-value=1.2e+02 Score=29.98 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 187 GTKTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 187 ~~rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
+.++|+||+.+.+.++..|+.+++....
T Consensus 129 pE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 129 PEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred CcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999988654
No 96
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=41.10 E-value=14 Score=45.42 Aligned_cols=100 Identities=27% Similarity=0.381 Sum_probs=72.8
Q ss_pred CCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccC
Q 003720 79 GVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (800)
Q Consensus 79 ~~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (800)
+...+..|-|.|-.. ||=|+|-|.|-..+|.|-.. +++ ..+-
T Consensus 747 ~rE~ir~g~llK~sk--kgLqqrmfFLfsdillytsk-~~~-----------------------------------~~~~ 788 (1036)
T KOG3531|consen 747 GREFIRSGCLLKLSK--KGLQQRMFFLFSDILLYTSK-GPD-----------------------------------VQKC 788 (1036)
T ss_pred chhhhhcCCchhhcc--ccchhhhhhhhhhhheeccC-CCC-----------------------------------hhhe
Confidence 455678899988764 77899999998888887543 321 1122
Q ss_pred CCcceeEEccceEEEecC---CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003720 159 CKPFGEIHLKVSSVRASK---SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPR 217 (800)
Q Consensus 159 ~~p~G~I~L~~~si~~~~---~d~~rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~~~~~ 217 (800)
.+..|.|.|. -.+..++ +-+..|+|.++.++++..|.++.+..+|+..++.+.+..++
T Consensus 789 fri~g~lP~~-l~~en~en~~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k 849 (1036)
T KOG3531|consen 789 FRINGDLPLT-LTMENSENEWSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPK 849 (1036)
T ss_pred eEeccCCceE-eeeecccccccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccc
Confidence 2355777776 3333221 22478999999999999999999999999999999887665
No 97
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=39.91 E-value=1.6 Score=56.83 Aligned_cols=102 Identities=16% Similarity=0.281 Sum_probs=65.3
Q ss_pred CCCcceEEEEEee---cC-----CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccc
Q 003720 79 GVSASVAGILYKW---VN-----YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSH 150 (800)
Q Consensus 79 ~~~~~~~G~L~K~---~n-----~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~ 150 (800)
+....++|+||.+ +. ..+.|..=|+++..+.|.+||+.+.+...+. .+
T Consensus 2296 ~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve-------~~----------------- 2351 (2473)
T KOG0517|consen 2296 SAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVE-------LL----------------- 2351 (2473)
T ss_pred cHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccch-------hh-----------------
Confidence 5566789999763 21 2366999999999999999998665322110 00
Q ss_pred cccccccCCCcceeEE--ccceEEEec---CCCCCceEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 151 RLGFAARQCKPFGEIH--LKVSSVRAS---KSDDKRLTIFT-GTKTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 151 ~~~~~~~~~~p~G~I~--L~~~si~~~---~~d~~rF~I~t-~~rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
..|+.. +..+.|... .....-|.+.. +++-|.|+|.+.++++.|+.++..++..
T Consensus 2352 ----------~r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~~ 2411 (2473)
T KOG0517|consen 2352 ----------VRGEPPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRAE 2411 (2473)
T ss_pred ----------ccCCcchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 112222 223322211 11223455554 4688999999999999999999988874
No 98
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=38.38 E-value=47 Score=39.46 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=58.2
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCC
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
....++||+.-.++.-..-++-|.-|+..++..|..... .|.+-+-
T Consensus 411 st~~kEGWmvHyt~~d~lRkrHYWrldsk~itlfqn~s~------------~ryYkeI---------------------- 456 (888)
T KOG4236|consen 411 STKLKEGWMVHYTSKDNLRKRHYWRLDSKCITLFQNEST------------NRYYKEI---------------------- 456 (888)
T ss_pred hhhhhcceEEEEechhhhhhhhhheeccceeEeeecCCC------------ceeEEee----------------------
Confidence 345689999988776655666677788877777775321 1111110
Q ss_pred CcceeE----EccceEEEecCCCCCceEEEeCCeEEEEEcCC------------HHHHHHHHHHHHHH
Q 003720 160 KPFGEI----HLKVSSVRASKSDDKRLTIFTGTKTLHLRCIS------------REDRTVWIDALQAA 211 (800)
Q Consensus 160 ~p~G~I----~L~~~si~~~~~d~~rF~I~t~~rt~~L~A~s------------~edr~~Wi~AL~~a 211 (800)
|..+| .-...+.......+..|.|.|++-+| |-.++ .+..+-|-.||+.|
T Consensus 457 -PLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~~vy-fVge~p~~~~~~~~g~g~d~a~~w~~ai~~a 522 (888)
T KOG4236|consen 457 -PLSEILSVSSNNGFSLVPAGTNPHCFEIRTATTVY-FVGENPSSTPGGESGVGLDAAQGWETAIQQA 522 (888)
T ss_pred -cHHHhheeeccCCcccCCCCCCCceEEEEeeeEEE-EecCCCCCCccccccccchhhccCchhhhhc
Confidence 22222 01111122335556779999999544 44555 56689999999987
No 99
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=37.49 E-value=54 Score=31.06 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=28.9
Q ss_pred ceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003720 181 RLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 181 rF~I~t~~rt~~L~A~s~edr~~Wi~AL~~a~~ 213 (800)
-|-|.|..+.+.|.|+|..+.+.|+++|+.--.
T Consensus 72 yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 72 YFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred EEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 355899999999999999999999999987643
No 100
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=36.97 E-value=1.3e+02 Score=28.26 Aligned_cols=36 Identities=6% Similarity=0.167 Sum_probs=28.7
Q ss_pred CCCCCceEEEe-CCeEEEEEcCCHHHHHHHHHHHHHH
Q 003720 176 KSDDKRLTIFT-GTKTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 176 ~~d~~rF~I~t-~~rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
....+.|.+.- +.-.|.|.|.+.++++.|+..|+.+
T Consensus 71 PD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~C 107 (107)
T cd01231 71 PDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRYC 107 (107)
T ss_pred cCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhcC
Confidence 44567788765 3457999999999999999999853
No 101
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=32.65 E-value=67 Score=38.53 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=19.5
Q ss_pred eEEEEEcCCHHHHHHHHHHHH
Q 003720 189 KTLHLRCISREDRTVWIDALQ 209 (800)
Q Consensus 189 rt~~L~A~s~edr~~Wi~AL~ 209 (800)
-.|.|+|+|.-||++||.||.
T Consensus 571 ~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 571 TELLLSAESQSDRQRWISALR 591 (695)
T ss_pred eeeeecCCchHHHHHHHHhcC
Confidence 379999999999999999998
No 102
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.19 E-value=1.4e+02 Score=31.78 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=21.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003720 261 EHSDLQNQLNALQRKHIMLLGTLRQLETEKMELE 294 (800)
Q Consensus 261 e~s~l~~~l~~~~~~~~~ll~~l~~Le~ek~~le 294 (800)
|-...-++|..+++++..|-..+++++.++.+..
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446677777777777777777766655443
No 103
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=28.69 E-value=84 Score=36.86 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=49.7
Q ss_pred ceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeecccchhhhhccccccccccccccCCCcceeEEccceEEEec--
Q 003720 98 WRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRAS-- 175 (800)
Q Consensus 98 Wr~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~~-- 175 (800)
=+-|||+|-..+|.++....+ | .+ ..-.|.+.+.+..|.--
T Consensus 325 ~~dRy~~LF~~~llflsvs~r----M-----s~----------------------------fIyegKlp~tG~iV~klEd 367 (661)
T KOG2070|consen 325 EKDRYLLLFPNVLLFLSVSPR----M-----SG----------------------------FIYEGKLPTTGMIVTKLED 367 (661)
T ss_pred hhhheeeeccceeeeeEeccc----c-----ch----------------------------hhhccccccceeEEeehhh
Confidence 579999999988888875221 1 00 01225555555555432
Q ss_pred -CCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003720 176 -KSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (800)
Q Consensus 176 -~~d~~rF~I~t~~-rt~~L~A~s~edr~~Wi~AL~~a 211 (800)
+...++|.|..++ -.+..-+....+.++|+++|+.-
T Consensus 368 te~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~~ 405 (661)
T KOG2070|consen 368 TENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNKQ 405 (661)
T ss_pred hhcccccccccccchhheeeccCChHHHHHHHHHhhhc
Confidence 2334678776654 33555689999999999999864
No 104
>PF14254 DUF4348: Domain of unknown function (DUF4348); PDB: 3SBU_A.
Probab=24.86 E-value=85 Score=34.14 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=24.2
Q ss_pred ccceeeeeeecceeeEeecceEE-EEc-CCCceEEEEeeecC
Q 003720 581 KVTTSIYNIILGKIYCDHYGTMR-IRG-SGNYSCKLKFKEQS 620 (800)
Q Consensus 581 ~pt~~v~nii~G~~~~e~~G~~~-I~~-~tg~~~~l~F~~~~ 620 (800)
.|...|+||+.|..|.+-..++- |++ .+|+.-+|.|+.++
T Consensus 225 lP~~~i~NI~YGQky~~s~~KIl~~rGi~NG~e~~l~Fk~~~ 266 (273)
T PF14254_consen 225 LPKGKIYNINYGQKYTESNQKILVFRGIANGLETELYFKKRG 266 (273)
T ss_dssp --SSEEEEEESS----T-SEEEEEEEESSS--EEEEEEEEET
T ss_pred CCccceeeeecccccCCCCceEEEEEeecCceeEEEEEEEcC
Confidence 58889999999999999544443 346 68999999998653
No 105
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=24.34 E-value=65 Score=36.68 Aligned_cols=53 Identities=25% Similarity=0.418 Sum_probs=41.1
Q ss_pred ceeEEccceEEEec----CCCCCceEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003720 162 FGEIHLKVSSVRAS----KSDDKRLTIFTGT--KTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 162 ~G~I~L~~~si~~~----~~d~~rF~I~t~~--rt~~L~A~s~edr~~Wi~AL~~a~~~ 214 (800)
...|.|+.|-+.-. +..++-|.|+++. -++.|||.+.++...|..||.++...
T Consensus 215 ~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ 273 (506)
T KOG3551|consen 215 RKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNT 273 (506)
T ss_pred ccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhh
Confidence 56788887765432 3445668898874 59999999999999999999998654
No 106
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=23.26 E-value=66 Score=32.35 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=19.5
Q ss_pred CCCCCCCCCeeEEEeCCCCeEEEE
Q 003720 500 KPFNPLLGETYEADYPDKGLRFFS 523 (800)
Q Consensus 500 KPfNPiLGETfe~~~~d~g~rfia 523 (800)
==|.|+.|+||.+...++|..|++
T Consensus 86 cnF~pipG~iYhLY~r~~G~~ylS 109 (159)
T PF10504_consen 86 CNFEPIPGQIYHLYRRENGQDYLS 109 (159)
T ss_pred cCceecCCCEEEEEECCCCCEEEE
Confidence 348899999999987777877765
No 107
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.95 E-value=2.4e+02 Score=27.45 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=43.3
Q ss_pred ccccHHHHHHHHhhcccchhhHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003720 230 VVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELE 294 (800)
Q Consensus 230 ~~~s~e~lr~rL~e~g~~e~~ik~~e~i~~se~s~l~~~l~~~~~~~~~ll~~l~~Le~ek~~le 294 (800)
++.....|.+|+...+-..+-..++-+.+.+|+..++..+..+..+.-.+-..+..||.-..++|
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567777776666655566677777788888888888877776666666666665444443
No 108
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.72 E-value=1.9e+02 Score=27.28 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 003720 265 LQNQLNALQRKHIMLLGTLRQLETEKMELEATVVDE 300 (800)
Q Consensus 265 l~~~l~~~~~~~~~ll~~l~~Le~ek~~le~~~~~e 300 (800)
.++.+..|+++...|.+...+||.|+.=|-+++-.|
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe 100 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLASPE 100 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 346777778888888888899998887665555443
No 109
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=21.42 E-value=51 Score=38.22 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=23.7
Q ss_pred CcceEEEEEeecCCCC--CceeeEEEEeCCeE
Q 003720 81 SASVAGILYKWVNYGK--GWRSRWFVLEDGVL 110 (800)
Q Consensus 81 ~~~~~G~L~K~~n~~k--gWr~RWFvL~~g~L 110 (800)
...+.|+++-+.+.++ .|+++|.+|..|.+
T Consensus 7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~ 38 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFKVKNVRDDGAELGSGSM 38 (429)
T ss_pred cccccCccchhhhhhccccccccceeeecccc
Confidence 4578899988777664 89999999987653
No 110
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=1.8e+02 Score=31.07 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCC-eeEEEeCCCCeEEEEEecccCCcccceeeeCCCeEEEEEe
Q 003720 497 RQCKPFNPLLGE-TYEADYPDKGLRFFSEKVSHHPMIVACHCEGRDWKFWADS 548 (800)
Q Consensus 497 r~~KPfNPiLGE-Tfe~~~~d~g~rfiaEQVSHHPPIsA~~~e~~g~~~~g~~ 548 (800)
-+..||||-+=| +|++ |+ .--||=+.+|+...||+++|-.
T Consensus 181 PigekFDPn~HEAvfq~--p~----------~~k~pgtV~~v~k~Gy~L~~R~ 221 (236)
T KOG3003|consen 181 PIGEKFDPNEHEAVFQV--PD----------AAKEPGTVALVTKKGYKLNGRV 221 (236)
T ss_pred CCCCCCCcchhheeEec--cc----------cCCCCCeEEEEeccCcccCCee
Confidence 467999999877 3443 22 2268888899999999998754
Done!