Query 003720
Match_columns 800
No_of_seqs 424 out of 2142
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 17:59:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003720.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1769-1773//hhsearch_pdb/003720hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 1.0 1 1 685.1 30.2 322 418-762 8-371 (438)
2 2rsg_A Collagen type IV alpha- 1.0 1 1 157.0 10.6 93 82-212 1-93 (94)
3 1x1f_A Signal-transducing adap 1.0 1 1 153.8 12.5 97 78-214 14-114 (149)
4 3rcp_A Pleckstrin homology dom 1.0 1 1 152.0 11.4 95 84-216 1-96 (103)
5 2d9x_A Oxysterol binding prote 1.0 1 1 150.2 11.0 101 80-218 6-109 (120)
6 1v88_A Oxysterol binding prote 1.0 1 1 149.9 12.4 96 80-216 6-127 (130)
7 2dhk_A TBC1 domain family memb 1.0 1 1 143.7 13.6 99 80-218 6-109 (119)
8 1btk_A Bruton'S tyrosine kinas 1.0 1 1 142.8 12.3 101 81-217 2-136 (169)
9 4h8s_A DCC-interacting protein 1.0 1 1 141.1 9.6 95 80-215 299-400 (407)
10 2q13_A DCC-interacting protein 1.0 1 1 140.9 10.8 93 81-214 277-376 (385)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=1.00 E-value=1 Score=685.13 Aligned_cols=322 Identities=22% Similarity=0.356 Sum_probs=283.0
Q ss_pred CCCCHHHHHHHHCCC---CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-------CCCC------HHHHHH
Q ss_conf 799425888740559---887766455522345585787642024158899887248-------9999------899999
Q 003720 418 EKPVGLWSIIKDNIG---KDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWG-------KQGN------DLMRIL 481 (800)
Q Consensus 418 ~~~~~lwsilK~~iG---kDLskislPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~-------~~~d------~~eRm~ 481 (800)
+.+.++|+++.++|| +|||+|+|||+||||+|+||+++++|+|++||+.|+... +..| |++||+
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLSkIslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm~ 87 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARML 87 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGGGSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 54633799999876312898433520754327804999988766567888655542443322124678344678889999
Q ss_pred HHHHHHHHHCCCC-------CCCCCCCCCCCCCCEEEEEECC-----CC-EEEEEEECCCCCCCCCEEEECC--CEEEEE
Q ss_conf 9999774311135-------7987777899887716988079-----98-6999983146886111166179--769999
Q 003720 482 NVAAFAVSGYAST-------EGRQCKPFNPLLGETYEADYPD-----KG-LRFFSEKVSHHPMIVACHCEGR--DWKFWA 546 (800)
Q Consensus 482 ~V~aF~iS~y~~~-------~~r~~KPfNPiLGETfe~~~~d-----~g-~rfiaEQVSHHPPIsA~~~e~~--g~~~~g 546 (800)
+|++|+||+|++. .++++|||||||||||+|.|+| .| ++|+||||||||||||||++++ ||+++|
T Consensus 88 ~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~g 167 (438)
T 1zhx_A 88 AVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQG 167 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 99999985514530234323665556768801234899964766777875799997404799705899993899889998
Q ss_pred EEEEEEEEEEE-EEEEEECEEEEEEECCCCEEEEECCCEEEEEEECCEEEEEECCEEEEECCCCCEEEEEEEECCCCCCC
Q ss_conf 95335789983-79999520799994599348861020025542126235863231999918886499986415743699
Q 003720 547 DSNLKGKFWGR-SIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRN 625 (800)
Q Consensus 547 ~~~~kskF~G~-si~i~~~G~~~i~f~~gE~Y~~~~p~~~i~nii~G~~~~e~~G~~~I~~~tg~~~~l~F~~~~~f~~~ 625 (800)
++.+++||||+ ||++.+.|.++|+|+ ||+|+|++|+++|+|||+|++|+|++|+|.|+|++||+|+|+|+++|||+++
T Consensus 168 ~~~~kskF~G~~Sv~v~~~G~~~l~l~-~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~~tg~~~~l~F~~kg~f~g~ 246 (438)
T 1zhx_A 168 YNQIKASFTKSLMLTVKQFGHTMLDIK-DESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGK 246 (438)
T ss_dssp EEEEEEEECTTCCEEEEEECCEEEEET-TEEEEEECCCEEEECTTTTCCEEEECSEEEEEETTSCEEEEEEECSSSSCSS
T ss_pred EEEEEEEECCCEEEEEECCEEEEEEEC-CCEEEEECCCEEEEEEEECCEEEECCCEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 744688886834899981517999999-9389996286899978826526863974999728997799997188874787
Q ss_pred CCEEEEEEEECC-----CCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 807999999589-----995899999786114999948999888988999983899910788754344666542114677
Q 003720 626 PHQVHGFVQDNR-----TGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNEL 700 (800)
Q Consensus 626 ~~~V~G~V~d~~-----~g~~~~~i~G~Wd~~i~~~~~~~~~k~~~~~~~~~~~~lW~~~~~~~~~~y~~t~fa~~lNel 700 (800)
.|.|+|.|++.. +|+++++|.|+|++.|++.+.... ....++|+.+..+. +. + .+
T Consensus 247 ~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~---------~~~~~~~~~~~~~~------~~----~-~v 306 (438)
T 1zhx_A 247 KNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK---------EESRLFYDAARIPA------EH----L-NV 306 (438)
T ss_dssp SSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG---------GGCEEEEETTTSCC------CC----C-BC
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEECCCC---------CCCEEEECCCCCCC------CC----C-CC
T ss_conf 65799999847756678893799999997642999767888---------65369751687877------66----5-47
Q ss_pred CCCCCCCCCCCCCCC--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCEEECCC
Q ss_conf 911239999998765--4758888619988999999999999999998504---9983341476899
Q 003720 701 TPGLLDKLPPTDSRL--RPDQRYLENGEYELANAEKLRLEQLQRQARQLQE---SGWQPSWFCKDED 762 (800)
Q Consensus 701 ~~~~~e~l~pTDSR~--RpD~raLe~Gd~~~A~~eK~rLEe~QR~~Rk~re---~~~~P~~F~~~~~ 762 (800)
.| .+.++|||||+ |||++||++||++.|+++|.+|||+||++||.|+ ..|+|+||++.++
T Consensus 307 ~p--~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 307 KP--LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp CC--GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred CC--HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 88--566799632001388999998689999999999999999999999987699831641897775
No 2
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=157.04 Aligned_cols=93 Identities=33% Similarity=0.623 Sum_probs=83.4
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 62689999531999994236999969929999216998545685458983363253011321256666543333347875
Q 003720 82 ASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (800)
Q Consensus 82 ~~~~G~L~K~~n~~kgWk~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (800)
+.++|||+|+|+..|+||+|||||.++.|+||+.+.. ....|
T Consensus 1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~--------------------------------------~~~~~ 42 (94)
T 2rsg_A 1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE--------------------------------------TEYGC 42 (94)
T ss_dssp CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTG--------------------------------------GGTCC
T ss_pred CCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCC--------------------------------------CCCCC
T ss_conf 9788999996899898058999998999999985244--------------------------------------56552
Q ss_pred CEEEECCCEEEEECCCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 204972531998317999746999299599998499999999999999999
Q 003720 162 FGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (800)
Q Consensus 162 ~G~I~L~~~si~~s~~d~~~F~I~t~~rt~~LrA~s~edr~~Wi~AL~~a~ 212 (800)
.|.|.|..+.+.....++..|.|.++.|+|+|+|+|.+|+++||.||+.|+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~Ak 93 (94)
T 2rsg_A 43 RGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93 (94)
T ss_dssp SEEEETTTCEEEECSSCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHHC
T ss_pred EEEEECCEEEEECCCCCCEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 256721024420476662269999699699998899999999999999646
No 3
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=1.00 E-value=1 Score=153.85 Aligned_cols=97 Identities=11% Similarity=0.185 Sum_probs=81.5
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 99986268999953199999423699996992999921699854568545898336325301132125666654333334
Q 003720 78 GGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 78 ~~~~~~~~G~L~K~~n~~kgWk~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
.+.+..++|||+|+|+..|.||+|||||+++.|+|||++..
T Consensus 14 ~~~pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d--------------------------------------- 54 (149)
T 1x1f_A 14 TALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKS--------------------------------------- 54 (149)
T ss_dssp SSSCEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSC---------------------------------------
T ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCC---------------------------------------
T ss_conf 89982479999981899998314899991999999957886---------------------------------------
Q ss_pred CCCCCEEEECCCEEEEECC----CCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 7875204972531998317----99974699929959999849999999999999999987
Q 003720 158 QCKPFGEIHLKVSSVRASK----SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~s~----~d~~~F~I~t~~rt~~LrA~s~edr~~Wi~AL~~a~~~ 214 (800)
..+.|.|+|..+++.... .....|.|.++.|+|+|+|+|.+||++||.||+.+...
T Consensus 55 -~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~~ 114 (149)
T 1x1f_A 55 -IIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTEL 114 (149)
T ss_dssp -SSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred -CCCCCEEECCCCEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf -666767978886698522688786868999759977999869999999999999999734
No 4
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=1.00 E-value=1 Score=152.04 Aligned_cols=95 Identities=31% Similarity=0.733 Sum_probs=83.8
Q ss_pred EEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCE
Q ss_conf 68999953199999423699996992999921699854568545898336325301132125666654333334787520
Q 003720 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (800)
Q Consensus 84 ~~G~L~K~~n~~kgWk~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (800)
|+|||+|+++..++|++|||||.++.|+||+++.. ....|.|
T Consensus 1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~--------------------------------------~~~~~~g 42 (103)
T 3rcp_A 1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDD--------------------------------------VCKGSKG 42 (103)
T ss_dssp CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC-----------------------------------------CCCSC
T ss_pred CCEEEEECCCCCCCEECEEEEEECCEEEEEECCCC--------------------------------------CCCCCCC
T ss_conf 95499971588898215599998999999964885--------------------------------------6678634
Q ss_pred EEECCCEEEEECCCCCCCEEEEEC-CEEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 497253199831799974699929-95999984999999999999999998743
Q 003720 164 EIHLKVSSVRASKSDDKRLTIFTG-TKTLHLRCISREDRTVWIDALQAAKDLFP 216 (800)
Q Consensus 164 ~I~L~~~si~~s~~d~~~F~I~t~-~rt~~LrA~s~edr~~Wi~AL~~a~~~~~ 216 (800)
.|+|..+.+.....++..|.|.++ .++|+|+|+|.+|+++||.||+.|+...+
T Consensus 43 ~i~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~~~ 96 (103)
T 3rcp_A 43 SIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLT 96 (103)
T ss_dssp EEEGGGCEEECCTTCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCCCC
T ss_pred EEEEEEEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 898145699976899954999937997899999999999999999999997554
No 5
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=150.18 Aligned_cols=101 Identities=28% Similarity=0.538 Sum_probs=86.1
Q ss_pred CCCCEEEEEEEECCCCCCCEEEEEEEE--CCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 986268999953199999423699996--992999921699854568545898336325301132125666654333334
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVLE--DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWk~RWFvL~--~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
....++|||+|+++..++|++|||||. ++.|+||+++.. .
T Consensus 6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~--------------------------------------~ 47 (120)
T 2d9x_A 6 SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQS--------------------------------------R 47 (120)
T ss_dssp SCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGG--------------------------------------S
T ss_pred CCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCC--------------------------------------C
T ss_conf 99728999996489999853799999899999999855763--------------------------------------5
Q ss_pred CCCCCEEEECCCEEEEECCCCCCCEEEEECC-EEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7875204972531998317999746999299-599998499999999999999999874312
Q 003720 158 QCKPFGEIHLKVSSVRASKSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAAKDLFPRL 218 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~s~~d~~~F~I~t~~-rt~~LrA~s~edr~~Wi~AL~~a~~~~~~~ 218 (800)
...|.|.|+|..+.|.....+...|.|.++. |+|+|+|+|.+|+++||.||+.+.......
T Consensus 48 ~~~~~g~I~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (120)
T 2d9x_A 48 NQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEA 109 (120)
T ss_dssp SSCCSEEEECTTCCEECCSSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEECCEEEEEECCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88766669865489975689998999985899889998799999999999999999986642
No 6
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=1.00 E-value=1 Score=149.92 Aligned_cols=96 Identities=27% Similarity=0.359 Sum_probs=79.2
Q ss_pred CCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 98626899995319999942369999699299992169985456854589833632530113212566665433333478
Q 003720 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (800)
Q Consensus 80 ~~~~~~G~L~K~~n~~kgWk~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (800)
..+.++|||+|++ ..|+|++|||||.+++|+|||++.. .
T Consensus 6 ~~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~~----------------------------------------~ 44 (130)
T 1v88_A 6 SGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKN----------------------------------------G 44 (130)
T ss_dssp SSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSSS----------------------------------------C
T ss_pred CCEEEEEEEEEEC-CCCCCEEEEEEEECCEEEEECCCCC----------------------------------------C
T ss_conf 8667984789858-9888468999997999999878887----------------------------------------7
Q ss_pred CCCEEEECCCEEEEECCCCC--CCEEEEECC------------------------EEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 75204972531998317999--746999299------------------------5999984999999999999999998
Q 003720 160 KPFGEIHLKVSSVRASKSDD--KRLTIFTGT------------------------KTLHLRCISREDRTVWIDALQAAKD 213 (800)
Q Consensus 160 ~p~G~I~L~~~si~~s~~d~--~~F~I~t~~------------------------rt~~LrA~s~edr~~Wi~AL~~a~~ 213 (800)
.|.|.|.|..+++.+..++. ..|.|.++. ++|+|+|+|.+|+++||.||+.|+.
T Consensus 45 ~p~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 45 QWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK 124 (130)
T ss_dssp CCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 72389984888998778778973999981786543223677644134000268836899988999999999999999984
Q ss_pred HCC
Q ss_conf 743
Q 003720 214 LFP 216 (800)
Q Consensus 214 ~~~ 216 (800)
.-+
T Consensus 125 ~~~ 127 (130)
T 1v88_A 125 SGP 127 (130)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 188
No 7
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=143.65 Aligned_cols=99 Identities=21% Similarity=0.451 Sum_probs=83.8
Q ss_pred CCCCEEEEEEEECC--CCCCCEEEEEEEECC--EEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCC
Q ss_conf 98626899995319--999942369999699--29999216998545685458983363253011321256666543333
Q 003720 80 VSASVAGILYKWVN--YGKGWRSRWFVLEDG--VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (800)
Q Consensus 80 ~~~~~~G~L~K~~n--~~kgWk~RWFvL~~g--~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 155 (800)
.+..++|||+|+++ ..++||+|||||.++ .|+||+++..
T Consensus 6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~------------------------------------- 48 (119)
T 2dhk_A 6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQD------------------------------------- 48 (119)
T ss_dssp SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCC-------------------------------------
T ss_conf 9985789899347999888824689999799648999899998-------------------------------------
Q ss_pred CCCCCCCEEEECCCEEEEEC-CCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 34787520497253199831-7999746999299599998499999999999999999874312
Q 003720 156 ARQCKPFGEIHLKVSSVRAS-KSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRL 218 (800)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~s-~~d~~~F~I~t~~rt~~LrA~s~edr~~Wi~AL~~a~~~~~~~ 218 (800)
..|.|.|+|..+.+... ......|.|.++.|+|+|+|+|.+|+++||.||+.++..+...
T Consensus 49 ---~~~~g~I~L~~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (119)
T 2dhk_A 49 ---ANPLDSIDLSSAVFDCKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109 (119)
T ss_dssp ---CSCSEEEEGGGCEEEECTTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---CCCCCEEECCCCEEEECCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---5412189888779975578989999998199479998799999999999999999996378
No 8
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=1.00 E-value=1 Score=142.84 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=78.6
Q ss_pred CCCEEEEEEEECC-----CCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCC
Q ss_conf 8626899995319-----99994236999969929999216998545685458983363253011321256666543333
Q 003720 81 SASVAGILYKWVN-----YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (800)
Q Consensus 81 ~~~~~G~L~K~~n-----~~kgWk~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 155 (800)
.+.++|||+|++. ..|+||+|||||.++.|+||+++...
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~------------------------------------ 45 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFER------------------------------------ 45 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTT------------------------------------
T ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC------------------------------------
T ss_conf 64799999986689888666887417999919989898057766------------------------------------
Q ss_pred CCCCCCCEEEECCCEEEEECC---CCC--------------------------CCEEEEECCEEEEEECCCHHHHHHHHH
Q ss_conf 347875204972531998317---999--------------------------746999299599998499999999999
Q 003720 156 ARQCKPFGEIHLKVSSVRASK---SDD--------------------------KRLTIFTGTKTLHLRCISREDRTVWID 206 (800)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~s~---~d~--------------------------~~F~I~t~~rt~~LrA~s~edr~~Wi~ 206 (800)
....+|+|.|+|..+.+.+.. .++ ..|.|.++.|+|+|+|+|.+||++||+
T Consensus 46 ~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~ 125 (169)
T 1btk_A 46 GRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIH 125 (169)
T ss_dssp TEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHH
T ss_conf 77873206998860688885267778611024444567654333222234566347999689549998499999999999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999987431
Q 003720 207 ALQAAKDLFPR 217 (800)
Q Consensus 207 AL~~a~~~~~~ 217 (800)
||+.+....+.
T Consensus 126 aI~~~i~~n~~ 136 (169)
T 1btk_A 126 QLKNVIRYNSD 136 (169)
T ss_dssp HHHHHHTTCSC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987901
No 9
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=141.11 Aligned_cols=95 Identities=22% Similarity=0.210 Sum_probs=78.7
Q ss_pred CCCCEEEEEEEE---CCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 986268999953---19999942369999699299992169985456854589833632530113212566665433333
Q 003720 80 VSASVAGILYKW---VNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAA 156 (800)
Q Consensus 80 ~~~~~~G~L~K~---~n~~kgWk~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 156 (800)
.++.++|||+|+ |..++.|++|||||++|.|+||+...
T Consensus 299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~--------------------------------------- 339 (407)
T 4h8s_A 299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGA--------------------------------------- 339 (407)
T ss_dssp SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTC---------------------------------------
T ss_pred CCCEEECEEEEECCCCCCCCCCEEEEEEEECCEEEEEECCC---------------------------------------
T ss_conf 85236540030312799888743789999899899995788---------------------------------------
Q ss_pred CCCCCCEEEECCCEEEEECCCCCCC--EEEEECC--EEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 4787520497253199831799974--6999299--599998499999999999999999874
Q 003720 157 RQCKPFGEIHLKVSSVRASKSDDKR--LTIFTGT--KTLHLRCISREDRTVWIDALQAAKDLF 215 (800)
Q Consensus 157 ~~~~p~G~I~L~~~si~~s~~d~~~--F~I~t~~--rt~~LrA~s~edr~~Wi~AL~~a~~~~ 215 (800)
..+.+.|.|..|+|+.....+++ |.|.++. ++|+|+|+|.+||..||.||+.|+...
T Consensus 340 --~~~~~~~~l~~~~v~~~~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 340 --VAGGLIQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp --SSCCCCBCSSCCEEEEECCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred --CCCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf --7887078778308987888889835999946999569997199999999999999999986
No 10
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=1.00 E-value=1 Score=140.88 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=78.2
Q ss_pred CCCEEEEEEEECCCC---CCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 862689999531999---99423699996992999921699854568545898336325301132125666654333334
Q 003720 81 SASVAGILYKWVNYG---KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (800)
Q Consensus 81 ~~~~~G~L~K~~n~~---kgWk~RWFvL~~g~L~YYk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
+..++|||+|++..+ +.|++|||||+++.|+||+. +.
T Consensus 277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~--------------------------------------- 316 (385)
T 2q13_A 277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GD--------------------------------------- 316 (385)
T ss_dssp CSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SC---------------------------------------
T ss_pred CCCEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEECC-CC---------------------------------------
T ss_conf 76579899870689998677335799998998889617-87---------------------------------------
Q ss_pred CCCCCEEEECCCEEEEECCCCCC--CEEEEECC--EEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 78752049725319983179997--46999299--59999849999999999999999987
Q 003720 158 QCKPFGEIHLKVSSVRASKSDDK--RLTIFTGT--KTLHLRCISREDRTVWIDALQAAKDL 214 (800)
Q Consensus 158 ~~~p~G~I~L~~~si~~s~~d~~--~F~I~t~~--rt~~LrA~s~edr~~Wi~AL~~a~~~ 214 (800)
..|.|.|+|..|++......++ .|.|.|+. ++|+|+|+|.+||+.||.||+.++..
T Consensus 317 -~~~~~~i~l~~~~v~~~~~~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 317 -VAGGLAMDIDNCSVMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQ 376 (385)
T ss_dssp -SSCEEEEECTTCEEEEECCTTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred -CCCCCEEECCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf -488736973650798636667871699995799868999969999999999999999984
Done!