BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003721
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 293/588 (49%), Positives = 407/588 (69%), Gaps = 17/588 (2%)
Query: 226 IPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRS----KLS 281
I ++L++ P E H A E +G+ E +K GK F R +
Sbjct: 26 IAEELSKQHPLPSEEPLVHHDAGEFKGLQRHHTSAEEAQKLEDGKINPFTGREFTPKYVD 85
Query: 282 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA--EAGYTTKGKIGC 339
I + RR LP+ ++E ++ +NQ+++ +GETGSGKTTQ+ Q++ E + ++ C
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 340 TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDEN 399
TQPRRVAA SVA+RVAEE +LGEEVGY+IRFE+ T T++KYMTDGMLLRE + D +
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 400 LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIF 459
LS+YS I+LDEAHERT+ TD+L GLLKQ+VKRRPDL++I+ SATLDAE+F YF + +
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL 265
Query: 460 SIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCE 519
++PGRT+PV++ Y+ + DYLDSA+ TVLQIH E GDILLFLTG++EI+ A +
Sbjct: 266 AVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325
Query: 520 KIKALGKD--VPELVVLPVYSALPSEIQSRIFEPAPPG-----GRKVVVATNIAEASLTI 572
+ L ++ L V P+Y +LP Q RIFEPAP GRKVV++TNIAE SLTI
Sbjct: 326 EGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 573 DGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAY 632
DGI YV+DPGF+KQ VYNP+ R++SL+++PIS+ASA QRAGRAGRT PGKC+RLYTE A+
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445
Query: 633 RSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALD 692
+ E+ + PEI R NL T L +K +GI++L+ FDF+DPP+P+ ++ A+E+L L LD
Sbjct: 446 QKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505
Query: 693 EEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKA 752
+EG LT LG+ ++FPLDP L+ ML+ S + CS EILTI+AM+ ++F RP + + +A
Sbjct: 506 DEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRA 565
Query: 753 DEKRARFFQPEGDHLTLLAVYEAWK---AKNFSL-PWCGENFVNSRSL 796
D+ + F P+GDH+TLL VY A+K A + + WC ++++N RSL
Sbjct: 566 DDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSL 613
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 293/588 (49%), Positives = 407/588 (69%), Gaps = 17/588 (2%)
Query: 226 IPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRS----KLS 281
I ++L++ P E H A E +G+ E +K GK F R +
Sbjct: 26 IAEELSKQHPLPSEEPLVHHDAGEFKGLQRHHTSAEEAQKLEDGKINPFTGREFTPKYVD 85
Query: 282 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA--EAGYTTKGKIGC 339
I + RR LP+ ++E ++ +NQ+++ +GETGSGKTTQ+ Q++ E + ++ C
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 340 TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDEN 399
TQPRRVAA SVA+RVAEE +LGEEVGY+IRFE+ T T++KYMTDGMLLRE + D +
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 400 LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIF 459
LS+YS I+LDEAHERT+ TD+L GLLKQ+VKRRPDL++I+ SATLDAE+F YF + +
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL 265
Query: 460 SIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCE 519
++PGRT+PV++ Y+ + DYLDSA+ TVLQIH E GDILLFLTG++EI+ A +
Sbjct: 266 AVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325
Query: 520 KIKALGKD--VPELVVLPVYSALPSEIQSRIFEPAPPG-----GRKVVVATNIAEASLTI 572
+ L ++ L V P+Y +LP Q RIFEPAP GRKVV++TNIAE SLTI
Sbjct: 326 EGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 573 DGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAY 632
DGI YV+DPGF+KQ VYNP+ R++SL+++PIS+ASA QRAGRAGRT PGKC+RLYTE A+
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445
Query: 633 RSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALD 692
+ E+ + PEI R NL T L +K +GI++L+ FDF+DPP+P+ ++ A+E+L L LD
Sbjct: 446 QKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505
Query: 693 EEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKA 752
+EG LT LG+ ++FPLDP L+ ML+ S + CS EILTI+AM+ ++F RP + + +A
Sbjct: 506 DEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRA 565
Query: 753 DEKRARFFQPEGDHLTLLAVYEAWK---AKNFSL-PWCGENFVNSRSL 796
D+ + F P+GDH+TLL VY A+K A + + WC ++++N RSL
Sbjct: 566 DDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSL 613
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 104/123 (84%)
Query: 676 QALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAM 735
+ LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M
Sbjct: 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSM 77
Query: 736 IQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRS 795
+ ++F RP+++QA AD+K+A+F Q EGDHLTLLAVY +WK FS PWC ENF+ +RS
Sbjct: 78 LSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARS 137
Query: 796 LKK 798
L++
Sbjct: 138 LRR 140
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 7/186 (3%)
Query: 281 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYL----AEAGYTTKGK 336
+I ++R LP+ K ++E+++A+ N V+I+ G TG GKTTQ+ Q++ + +
Sbjct: 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECN 111
Query: 337 IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG-PDTVIKYMTDGMLLREIL 395
I TQPRR++A SVA+RVA E G G+ GY++RFE P I + T G+LLR++
Sbjct: 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL- 170
Query: 396 IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFN 455
+ + S +++DE HER INTD L +L+ +V+ P++R+++ SAT+D F YFFN
Sbjct: 171 -EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFFN 229
Query: 456 CNIFSI 461
C I +
Sbjct: 230 CPIIEV 235
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 307 VLILIGETGSGKTTQLAQ---YLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLG 363
+ +L+G G+GKTT LA+ Y AE GY K I R AT +++ E RL
Sbjct: 107 IFMLVGVNGTGKTTSLAKMANYYAELGY--KVLIAAADTFRAGAT---QQLEEWIKTRLN 161
Query: 364 EEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFG 423
+V + P +V+ + + Y ++++D A T+++
Sbjct: 162 NKVDLVKANKLNADPASVV---------FDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAE 212
Query: 424 L------LKQLVKRRPDLRLIVTSAT------LDAERFS 450
L ++Q+ K P L+V AT + AE FS
Sbjct: 213 LEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 251
>pdb|3HLK|A Chain A, Crystal Structure Of Human Mitochondrial Acyl-Coa
Thioesterase (Acot2)
pdb|3HLK|B Chain B, Crystal Structure Of Human Mitochondrial Acyl-Coa
Thioesterase (Acot2)
Length = 446
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 467 PVDINYSRQEVTDYLDSALITVLQIHVDEPEG----------DILLFLTGQEEIDFACE- 515
PV +N +R +VT + ++ VL ++ P+ LFL GQ++ ++ E
Sbjct: 291 PVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEF 350
Query: 516 ---SLCEKIKALGKDVPELVVLP 535
C++++A G+ P+++ P
Sbjct: 351 YANEACKRLQAHGRRKPQIICYP 373
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 300 QAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG--CTQPRRVAATSVAKRVAE 356
+ +H ++ ++L G TG+GKTT LA+ A + KI T R+AA K AE
Sbjct: 101 EPIH-SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAE 158
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 408 LDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDA 446
LD +INTD F L K+LV + PD ++ + ++ A
Sbjct: 22 LDSLTLASINTDFAFSLYKELVLKNPDTNIVFSPLSISA 60
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 298 LIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTK 334
L +AV +V+++ GETGSGKTT + + E + +
Sbjct: 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG 338
++ + +VLI I +TG G T + + L E +TTKG G
Sbjct: 150 SIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGVKG 187
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKI 337
F N+L + D + L+L+G +G GKTT L + +A T+G+I
Sbjct: 25 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRI 69
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKI 337
F N+L + D + L+L+G +G GKTT L + +A T+G+I
Sbjct: 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRI 68
>pdb|2QEQ|A Chain A, Crystal Structure Of Kunjin Virus Ns3 Helicase
pdb|2QEQ|B Chain B, Crystal Structure Of Kunjin Virus Ns3 Helicase
Length = 434
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEE 365
Q+ +L G+GKT ++ + + + + P RV A +A+ +
Sbjct: 3 QITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR---------- 52
Query: 366 VGYAIRFEDCT-----GPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAH 412
G IR++ + ++ M L ++ + Y++ ++DEAH
Sbjct: 53 -GLPIRYQTSAVAREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAH 103
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 295 KNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG-KIGCTQPRRVAATSVAKR 353
K ++ A+ ++ I+ G G+GKTT + + + +A +G K+ C P +A ++ +R
Sbjct: 195 KEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA--VKQGLKVLCCAPSNIAVDNLVER 252
Query: 354 VA 355
+A
Sbjct: 253 LA 254
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 302 VHDNQVLILIGETGSGKTT---QLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF 358
+ D + L+G GSGKTT +LA Y Y KG+ +P VAA + E+
Sbjct: 95 LKDRNLWFLVGLQGSGKTTTAAKLALY-----YKGKGR----RPLLVAADTQRPAAREQL 145
Query: 359 GCRLGEEVGY-AIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIN 417
LGE+VG + D P+++ + + + L +I++D A I+
Sbjct: 146 RL-LGEKVGVPVLEVMDGESPESIRRRVEE---------KARLEARDLILVDTAGRLQID 195
Query: 418 TDVLFGL--LKQLVKRRPDLRLIVTSATLDAERFS 450
++ L LK+++ PD L+V A E S
Sbjct: 196 EPLMGELARLKEVLG--PDEVLLVLDAMTGQEALS 228
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 295 KNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG-KIGCTQPRRVAATSVAKR 353
K ++ A+ ++ I+ G G+GKTT + + + +A +G K+ C P +A ++ +R
Sbjct: 195 KEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA--VKQGLKVLCCAPSNIAVDNLVER 252
Query: 354 VA 355
+A
Sbjct: 253 LA 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,726,491
Number of Sequences: 62578
Number of extensions: 928681
Number of successful extensions: 2605
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2582
Number of HSP's gapped (non-prelim): 44
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)