Query 003721
Match_columns 800
No_of_seqs 772 out of 3849
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:44:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0924 mRNA splicing factor A 100.0 4E-140 8E-145 1141.7 45.6 648 131-800 216-867 (1042)
2 KOG0923 mRNA splicing factor A 100.0 3E-127 7E-132 1041.0 43.0 523 278-800 253-777 (902)
3 KOG0922 DEAH-box RNA helicase 100.0 3E-125 6E-130 1041.2 47.0 538 261-800 22-561 (674)
4 KOG0925 mRNA splicing factor A 100.0 5E-114 1E-118 910.4 41.2 518 277-799 34-557 (699)
5 COG1643 HrpA HrpA-like helicas 100.0 4E-100 9E-105 890.3 49.1 516 278-799 38-572 (845)
6 PRK11131 ATP-dependent RNA hel 100.0 1.5E-95 3E-100 878.5 50.4 508 283-800 67-591 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.2E-93 2.5E-98 865.6 51.3 507 283-799 60-581 (1283)
8 KOG0926 DEAH-box RNA helicase 100.0 1E-90 2.2E-95 766.6 39.6 523 276-799 242-905 (1172)
9 KOG0920 ATP-dependent RNA heli 100.0 2.8E-90 6.1E-95 802.5 37.4 519 278-798 161-720 (924)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.1E-81 6.7E-86 743.8 46.6 447 289-743 1-448 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 2.5E-78 5.5E-83 720.7 47.0 444 288-739 3-449 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 1.4E-55 3.1E-60 513.1 35.6 396 293-724 167-597 (675)
13 KOG0333 U5 snRNP-like RNA heli 100.0 6.1E-49 1.3E-53 420.5 17.7 419 175-631 154-625 (673)
14 KOG0921 Dosage compensation co 100.0 1.1E-48 2.3E-53 437.5 17.3 512 281-797 369-948 (1282)
15 PRK01172 ski2-like helicase; P 100.0 8.1E-45 1.7E-49 433.9 39.9 486 289-797 21-568 (674)
16 PRK02362 ski2-like helicase; P 100.0 6.2E-44 1.3E-48 429.3 41.3 491 291-796 24-607 (737)
17 KOG0331 ATP-dependent RNA heli 100.0 3E-43 6.6E-48 389.3 25.0 314 291-633 114-451 (519)
18 PRK00254 ski2-like helicase; P 100.0 1.4E-40 3.1E-45 399.2 41.8 489 290-797 23-599 (720)
19 KOG0330 ATP-dependent RNA heli 100.0 2.2E-42 4.9E-47 359.3 18.6 308 292-631 85-408 (476)
20 PTZ00110 helicase; Provisional 100.0 1.7E-41 3.8E-46 393.5 27.3 312 291-632 153-486 (545)
21 PRK11776 ATP-dependent RNA hel 100.0 1.7E-40 3.8E-45 380.3 30.3 310 291-632 27-351 (460)
22 PLN00206 DEAD-box ATP-dependen 100.0 5.7E-41 1.2E-45 388.0 26.4 344 253-632 109-477 (518)
23 COG0513 SrmB Superfamily II DN 100.0 2.7E-40 5.9E-45 380.1 26.9 308 291-630 52-380 (513)
24 PRK04837 ATP-dependent RNA hel 100.0 3.8E-40 8.2E-45 373.6 27.2 309 292-632 32-364 (423)
25 PRK10590 ATP-dependent RNA hel 100.0 9.4E-40 2E-44 373.1 28.2 310 291-632 24-354 (456)
26 PRK11192 ATP-dependent RNA hel 100.0 1.9E-39 4.1E-44 369.3 29.7 312 291-633 24-355 (434)
27 PRK11634 ATP-dependent RNA hel 100.0 3.7E-39 7.9E-44 377.5 29.9 310 290-632 28-354 (629)
28 PRK04537 ATP-dependent RNA hel 100.0 3.8E-39 8.3E-44 375.2 29.1 310 291-632 32-366 (572)
29 PRK01297 ATP-dependent RNA hel 100.0 2.6E-39 5.6E-44 371.8 26.9 311 290-632 109-444 (475)
30 COG1204 Superfamily II helicas 100.0 1.6E-38 3.5E-43 375.0 33.8 493 291-798 32-622 (766)
31 PTZ00424 helicase 45; Provisio 100.0 8.7E-39 1.9E-43 360.4 26.2 312 291-633 51-377 (401)
32 COG1202 Superfamily II helicas 100.0 1.8E-38 3.9E-43 342.9 26.8 479 282-794 208-758 (830)
33 PLN03137 ATP-dependent DNA hel 100.0 4E-38 8.7E-43 372.8 28.3 309 289-632 459-789 (1195)
34 TIGR00614 recQ_fam ATP-depende 100.0 1.6E-37 3.4E-42 355.9 28.9 307 291-633 12-336 (470)
35 KOG0338 ATP-dependent RNA heli 100.0 7.7E-39 1.7E-43 341.7 16.5 316 283-632 199-535 (691)
36 TIGR03817 DECH_helic helicase/ 100.0 3.5E-37 7.6E-42 367.5 30.7 318 290-629 36-385 (742)
37 KOG0342 ATP-dependent RNA heli 100.0 8.4E-38 1.8E-42 334.4 22.2 310 291-632 105-439 (543)
38 KOG0345 ATP-dependent RNA heli 100.0 2.5E-37 5.4E-42 328.3 22.9 328 292-649 30-385 (567)
39 PRK11057 ATP-dependent DNA hel 100.0 1.2E-36 2.6E-41 357.7 28.4 305 291-632 26-345 (607)
40 KOG0336 ATP-dependent RNA heli 100.0 2.1E-37 4.4E-42 322.6 17.3 314 286-633 241-575 (629)
41 KOG0343 RNA Helicase [RNA proc 100.0 4.8E-37 1E-41 330.5 17.9 313 289-631 90-423 (758)
42 KOG0341 DEAD-box protein abstr 100.0 1E-37 2.3E-42 322.8 9.7 348 251-632 156-530 (610)
43 KOG0340 ATP-dependent RNA heli 100.0 2.5E-36 5.5E-41 310.9 18.9 309 293-632 32-363 (442)
44 KOG0339 ATP-dependent RNA heli 100.0 2.6E-36 5.6E-41 321.8 19.2 310 291-633 246-578 (731)
45 TIGR01389 recQ ATP-dependent D 100.0 1.2E-35 2.5E-40 350.0 27.0 304 291-632 14-333 (591)
46 KOG0335 ATP-dependent RNA heli 100.0 1.4E-36 3E-41 330.9 16.8 310 292-629 98-443 (482)
47 KOG0328 Predicted ATP-dependen 100.0 4.3E-36 9.4E-41 300.1 18.3 310 293-633 52-376 (400)
48 KOG0348 ATP-dependent RNA heli 100.0 2.1E-35 4.4E-40 317.2 23.9 327 289-634 158-560 (708)
49 KOG0952 DNA/RNA helicase MER3/ 100.0 6.2E-35 1.3E-39 334.2 28.2 473 292-777 112-685 (1230)
50 PRK13767 ATP-dependent helicas 100.0 1.1E-34 2.4E-39 352.6 30.0 313 291-627 33-397 (876)
51 KOG0347 RNA helicase [RNA proc 100.0 1.4E-35 3.1E-40 319.3 12.0 309 292-632 205-572 (731)
52 TIGR00580 mfd transcription-re 100.0 3.1E-33 6.7E-38 336.7 32.9 373 184-630 377-770 (926)
53 KOG0326 ATP-dependent RNA heli 100.0 3.9E-35 8.4E-40 297.6 13.8 308 293-632 110-431 (459)
54 PRK10689 transcription-repair 100.0 1.4E-32 3E-37 337.6 30.3 372 185-629 527-918 (1147)
55 COG0514 RecQ Superfamily II DN 100.0 4.1E-33 8.9E-38 314.4 23.4 303 295-632 22-339 (590)
56 COG1201 Lhr Lhr-like helicases 100.0 9.7E-33 2.1E-37 321.7 27.2 322 259-627 7-361 (814)
57 KOG0350 DEAD-box ATP-dependent 100.0 1.6E-33 3.5E-38 301.0 17.1 318 288-632 157-542 (620)
58 KOG0334 RNA helicase [RNA proc 100.0 9.7E-34 2.1E-38 327.8 15.4 355 243-631 343-721 (997)
59 PRK10917 ATP-dependent DNA hel 100.0 4.5E-32 9.8E-37 322.4 30.0 306 282-628 251-587 (681)
60 PRK09751 putative ATP-dependen 100.0 2.3E-32 5E-37 337.0 25.8 295 310-625 1-380 (1490)
61 TIGR00643 recG ATP-dependent D 100.0 1E-31 2.2E-36 317.4 30.3 309 282-628 225-564 (630)
62 KOG0332 ATP-dependent RNA heli 100.0 1.9E-32 4.2E-37 283.6 18.9 313 293-631 115-444 (477)
63 TIGR01587 cas3_core CRISPR-ass 100.0 3E-31 6.5E-36 294.6 25.5 291 307-631 1-337 (358)
64 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.4E-31 7.4E-36 310.5 25.9 302 291-628 16-389 (844)
65 KOG0346 RNA helicase [RNA proc 100.0 4.5E-31 9.8E-36 278.4 18.8 308 293-632 44-412 (569)
66 KOG0951 RNA helicase BRR2, DEA 100.0 7.8E-30 1.7E-34 295.1 29.4 440 257-727 293-836 (1674)
67 COG1111 MPH1 ERCC4-like helica 100.0 6.7E-30 1.5E-34 276.1 26.6 315 292-630 17-481 (542)
68 KOG0344 ATP-dependent RNA heli 100.0 6.5E-31 1.4E-35 288.0 16.2 317 286-632 157-497 (593)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 4E-29 8.8E-34 276.1 28.5 285 294-616 1-357 (357)
70 KOG4284 DEAD box protein [Tran 100.0 5.4E-30 1.2E-34 279.9 16.2 310 293-630 50-379 (980)
71 PHA02558 uvsW UvsW helicase; P 100.0 9.3E-29 2E-33 285.1 26.7 296 289-622 113-443 (501)
72 COG1205 Distinct helicase fami 100.0 1.1E-28 2.4E-33 295.6 24.4 324 285-628 65-420 (851)
73 KOG0352 ATP-dependent DNA heli 100.0 1.3E-28 2.7E-33 258.6 19.5 307 293-632 23-364 (641)
74 KOG0354 DEAD-box like helicase 100.0 5.9E-28 1.3E-32 275.3 25.8 318 287-630 59-529 (746)
75 KOG0327 Translation initiation 100.0 4.4E-29 9.5E-34 261.5 15.2 307 292-633 50-373 (397)
76 KOG0353 ATP-dependent DNA heli 100.0 1.5E-27 3.3E-32 246.6 26.3 307 291-632 95-469 (695)
77 KOG0948 Nuclear exosomal RNA h 100.0 2.6E-29 5.6E-34 278.7 13.9 325 288-630 127-539 (1041)
78 PRK13766 Hef nuclease; Provisi 100.0 1.6E-27 3.5E-32 290.0 28.9 313 289-630 14-479 (773)
79 KOG0351 ATP-dependent DNA heli 100.0 2.1E-28 4.6E-33 291.0 19.2 307 292-633 266-595 (941)
80 KOG0947 Cytoplasmic exosomal R 100.0 4.4E-28 9.6E-33 275.0 19.8 323 288-629 295-722 (1248)
81 COG4581 Superfamily II RNA hel 100.0 1.1E-27 2.3E-32 283.0 23.5 326 286-628 115-535 (1041)
82 PRK09401 reverse gyrase; Revie 100.0 2.1E-27 4.6E-32 292.7 23.1 291 290-616 80-429 (1176)
83 KOG0337 ATP-dependent RNA heli 100.0 2E-28 4.3E-33 257.5 10.2 312 284-631 40-369 (529)
84 TIGR00603 rad25 DNA repair hel 99.9 4.8E-26 1.1E-30 264.9 26.4 302 288-632 253-609 (732)
85 PRK14701 reverse gyrase; Provi 99.9 8.9E-27 1.9E-31 292.6 20.9 313 290-631 79-457 (1638)
86 TIGR03714 secA2 accessory Sec 99.9 3.9E-25 8.6E-30 257.3 28.5 314 285-632 63-539 (762)
87 PRK12898 secA preprotein trans 99.9 2.6E-25 5.7E-30 256.0 26.3 308 289-631 102-587 (656)
88 PRK09200 preprotein translocas 99.9 5.3E-25 1.1E-29 258.6 26.2 308 291-632 79-543 (790)
89 PRK05580 primosome assembly pr 99.9 8.1E-25 1.8E-29 259.5 26.5 313 289-625 143-544 (679)
90 COG4098 comFA Superfamily II D 99.9 4.6E-24 9.9E-29 219.9 25.4 291 296-626 107-412 (441)
91 TIGR01054 rgy reverse gyrase. 99.9 1.4E-24 3.1E-29 268.1 24.4 274 290-587 78-411 (1171)
92 PRK09694 helicase Cas3; Provis 99.9 6.3E-24 1.4E-28 253.8 28.5 299 290-619 286-663 (878)
93 COG1197 Mfd Transcription-repa 99.9 5.9E-24 1.3E-28 251.5 27.5 366 192-631 528-914 (1139)
94 TIGR00963 secA preprotein tran 99.9 3.3E-24 7.1E-29 248.1 24.1 307 291-632 57-519 (745)
95 TIGR00595 priA primosomal prot 99.9 1.4E-24 3.1E-29 248.9 20.5 298 309-630 1-382 (505)
96 COG1061 SSL2 DNA or RNA helica 99.9 2.4E-23 5.2E-28 235.9 26.6 292 286-619 32-377 (442)
97 KOG0950 DNA polymerase theta/e 99.9 1.3E-23 2.8E-28 241.2 21.1 333 284-632 217-613 (1008)
98 COG1200 RecG RecG-like helicas 99.9 3E-23 6.5E-28 233.8 22.4 314 281-630 251-591 (677)
99 PRK11448 hsdR type I restricti 99.9 1.3E-22 2.7E-27 249.2 28.7 315 289-628 412-813 (1123)
100 PRK04914 ATP-dependent helicas 99.9 1.2E-20 2.6E-25 227.1 27.6 312 289-630 151-605 (956)
101 PRK13104 secA preprotein trans 99.8 1.5E-19 3.3E-24 212.2 24.4 129 284-413 74-213 (896)
102 KOG0329 ATP-dependent RNA heli 99.8 1.2E-20 2.5E-25 187.2 12.2 273 293-631 67-356 (387)
103 COG1203 CRISPR-associated heli 99.8 7.9E-20 1.7E-24 219.1 21.7 305 290-628 195-548 (733)
104 PRK12906 secA preprotein trans 99.8 1.2E-19 2.7E-24 212.0 20.9 107 496-631 439-554 (796)
105 KOG0949 Predicted helicase, DE 99.8 2.7E-19 5.9E-24 204.3 20.5 337 289-647 510-1065(1330)
106 KOG0349 Putative DEAD-box RNA 99.8 4.3E-20 9.3E-25 194.6 11.3 269 336-628 288-613 (725)
107 PRK12904 preprotein translocas 99.8 1.1E-18 2.4E-23 204.9 22.9 329 286-630 75-573 (830)
108 PRK13107 preprotein translocas 99.8 3.8E-17 8.3E-22 191.5 22.9 117 483-630 437-591 (908)
109 KOG0953 Mitochondrial RNA heli 99.7 2.8E-17 6.2E-22 179.1 17.7 281 304-630 190-477 (700)
110 COG4096 HsdR Type I site-speci 99.7 2.7E-16 5.8E-21 179.9 26.1 333 291-658 166-575 (875)
111 COG1198 PriA Primosomal protei 99.7 5.3E-17 1.1E-21 189.3 20.3 324 288-630 196-604 (730)
112 PF04408 HA2: Helicase associa 99.7 4.4E-18 9.5E-23 153.6 8.5 91 680-770 1-102 (102)
113 PRK12899 secA preprotein trans 99.7 2.1E-16 4.7E-21 185.5 24.4 122 291-413 93-226 (970)
114 PF00270 DEAD: DEAD/DEAH box h 99.7 5.4E-17 1.2E-21 160.1 13.2 152 293-445 2-163 (169)
115 cd00268 DEADc DEAD-box helicas 99.7 2.1E-16 4.6E-21 161.0 15.4 156 290-446 21-186 (203)
116 TIGR00348 hsdR type I site-spe 99.7 1.2E-15 2.7E-20 181.2 23.0 299 292-621 240-638 (667)
117 smart00847 HA2 Helicase associ 99.7 3.4E-16 7.3E-21 138.7 9.4 90 680-770 1-92 (92)
118 PLN03142 Probable chromatin-re 99.6 1E-14 2.3E-19 176.7 24.1 306 290-632 169-601 (1033)
119 KOG4150 Predicted ATP-dependen 99.6 1.3E-15 2.8E-20 165.5 11.4 309 290-619 286-628 (1034)
120 TIGR00631 uvrb excinuclease AB 99.6 7.2E-15 1.6E-19 173.0 16.5 113 496-630 441-553 (655)
121 COG1110 Reverse gyrase [DNA re 99.6 8.9E-14 1.9E-18 161.6 24.8 274 289-587 81-419 (1187)
122 COG0556 UvrB Helicase subunit 99.6 1.2E-13 2.7E-18 150.7 24.1 167 434-628 386-555 (663)
123 KOG0921 Dosage compensation co 99.6 5.5E-17 1.2E-21 184.0 -3.4 433 286-732 402-885 (1282)
124 TIGR01407 dinG_rel DnaQ family 99.5 7.7E-13 1.7E-17 162.2 26.5 139 479-626 657-811 (850)
125 PRK05298 excinuclease ABC subu 99.5 6.5E-14 1.4E-18 166.0 16.2 112 496-629 445-556 (652)
126 cd00079 HELICc Helicase superf 99.5 5.1E-14 1.1E-18 132.3 11.9 104 496-626 27-131 (131)
127 PRK12326 preprotein translocas 99.5 8E-13 1.7E-17 152.2 22.6 117 482-629 414-546 (764)
128 PF00271 Helicase_C: Helicase 99.5 3.2E-14 6.9E-19 121.8 6.1 72 530-619 7-78 (78)
129 smart00487 DEXDc DEAD-like hel 99.5 5.3E-13 1.2E-17 133.7 15.7 157 289-446 7-172 (201)
130 KOG1123 RNA polymerase II tran 99.5 2.9E-13 6.3E-18 146.0 13.5 291 287-619 299-635 (776)
131 cd00046 DEXDc DEAD-like helica 99.5 8.3E-13 1.8E-17 124.5 14.4 136 306-444 1-144 (144)
132 PRK12900 secA preprotein trans 99.5 4.1E-13 9E-18 158.5 14.7 165 436-632 535-713 (1025)
133 KOG0951 RNA helicase BRR2, DEA 99.5 1.9E-12 4.1E-17 152.2 19.9 331 293-644 1146-1510(1674)
134 PRK13103 secA preprotein trans 99.4 2.9E-12 6.2E-17 151.1 20.0 127 286-413 76-213 (913)
135 TIGR02562 cas3_yersinia CRISPR 99.4 1.7E-11 3.8E-16 145.6 24.8 309 285-620 403-881 (1110)
136 PF04851 ResIII: Type III rest 99.4 2.3E-12 5E-17 128.4 13.3 147 289-445 2-183 (184)
137 PRK07246 bifunctional ATP-depe 99.4 9E-11 1.9E-15 142.4 29.0 134 478-626 630-780 (820)
138 PF07652 Flavi_DEAD: Flaviviru 99.4 1.8E-12 3.8E-17 121.4 11.0 136 304-447 3-139 (148)
139 PRK12903 secA preprotein trans 99.4 4.4E-11 9.6E-16 139.8 23.7 115 483-629 414-538 (925)
140 smart00490 HELICc helicase sup 99.3 2.7E-12 5.8E-17 110.0 6.5 72 530-619 11-82 (82)
141 CHL00122 secA preprotein trans 99.2 3.3E-10 7.1E-15 133.4 21.2 127 286-413 70-207 (870)
142 PRK14873 primosome assembly pr 99.2 9.1E-11 2E-15 138.2 16.1 135 310-451 165-310 (665)
143 PRK08074 bifunctional ATP-depe 99.2 1.8E-09 3.8E-14 133.5 23.7 141 478-626 734-890 (928)
144 KOG0385 Chromatin remodeling c 99.2 2.5E-09 5.5E-14 121.5 22.5 312 290-633 167-602 (971)
145 TIGR03117 cas_csf4 CRISPR-asso 99.1 4.2E-08 9E-13 114.6 30.8 135 480-627 454-614 (636)
146 COG4889 Predicted helicase [Ge 99.1 3E-10 6.5E-15 129.7 12.5 312 289-624 160-578 (1518)
147 PRK12902 secA preprotein trans 99.1 4.7E-09 1E-13 123.6 22.7 128 285-413 78-216 (939)
148 PF02399 Herpes_ori_bp: Origin 99.1 3.9E-09 8.6E-14 123.0 21.1 292 304-632 48-390 (824)
149 PRK12901 secA preprotein trans 99.0 2.3E-08 4.9E-13 119.0 19.6 115 483-628 616-739 (1112)
150 PRK11747 dinG ATP-dependent DN 99.0 2.5E-07 5.4E-12 111.1 28.7 134 479-626 518-671 (697)
151 KOG0387 Transcription-coupled 98.9 4.8E-08 1E-12 111.9 20.2 113 497-632 546-660 (923)
152 COG1199 DinG Rad3-related DNA 98.9 3.3E-07 7.2E-12 110.2 26.6 137 479-627 462-615 (654)
153 KOG0384 Chromodomain-helicase 98.8 9.6E-08 2.1E-12 113.8 18.6 118 495-636 697-817 (1373)
154 TIGR00604 rad3 DNA repair heli 98.8 3.1E-07 6.7E-12 111.0 23.2 139 478-622 504-665 (705)
155 KOG0390 DNA repair protein, SN 98.8 7.7E-07 1.7E-11 104.5 25.3 84 530-631 619-708 (776)
156 KOG1000 Chromatin remodeling p 98.7 2.2E-06 4.9E-11 93.7 21.4 271 291-583 199-571 (689)
157 KOG0392 SNF2 family DNA-depend 98.4 1.6E-05 3.5E-10 95.1 21.9 114 497-634 1340-1458(1549)
158 COG1419 FlhF Flagellar GTP-bin 98.4 1.6E-05 3.5E-10 87.1 17.9 171 304-508 202-376 (407)
159 COG0653 SecA Preprotein transl 98.2 3.5E-05 7.5E-10 91.3 18.2 126 287-413 75-211 (822)
160 PF00448 SRP54: SRP54-type pro 98.2 8E-06 1.7E-10 82.7 10.9 126 306-449 2-130 (196)
161 PF00176 SNF2_N: SNF2 family N 98.2 5.7E-06 1.2E-10 89.2 10.1 137 304-447 24-175 (299)
162 COG0610 Type I site-specific r 98.1 6.7E-05 1.4E-09 93.0 18.7 133 306-444 274-413 (962)
163 PF13604 AAA_30: AAA domain; P 98.1 8.5E-06 1.8E-10 82.7 8.8 121 292-443 3-130 (196)
164 PF06862 DUF1253: Protein of u 98.1 0.0002 4.4E-09 80.3 20.3 227 379-632 131-417 (442)
165 KOG0389 SNF2 family DNA-depend 98.1 0.00028 6.1E-09 81.7 20.0 114 497-634 777-892 (941)
166 PRK12723 flagellar biosynthesi 98.0 5.5E-05 1.2E-09 84.2 14.0 128 305-455 174-308 (388)
167 PRK12726 flagellar biosynthesi 98.0 6.4E-05 1.4E-09 82.3 14.0 191 234-453 138-336 (407)
168 PRK11889 flhF flagellar biosyn 98.0 8.1E-05 1.7E-09 81.8 14.4 123 305-448 241-366 (436)
169 TIGR02768 TraA_Ti Ti-type conj 98.0 0.00073 1.6E-08 82.0 24.2 123 288-441 350-474 (744)
170 PF13401 AAA_22: AAA domain; P 98.0 1.1E-05 2.4E-10 75.8 5.5 117 304-442 3-124 (131)
171 PRK05703 flhF flagellar biosyn 97.9 0.00037 8E-09 79.0 18.5 126 304-452 220-350 (424)
172 KOG0952 DNA/RNA helicase MER3/ 97.9 7.2E-06 1.6E-10 97.0 4.7 212 306-518 944-1174(1230)
173 PF13245 AAA_19: Part of AAA d 97.9 3.9E-05 8.4E-10 65.2 6.9 54 301-354 6-62 (76)
174 PRK14722 flhF flagellar biosyn 97.8 0.00017 3.8E-09 79.6 12.7 124 303-449 135-262 (374)
175 TIGR01448 recD_rel helicase, p 97.8 0.00017 3.7E-09 87.1 13.4 123 289-443 322-452 (720)
176 PRK13889 conjugal transfer rel 97.8 0.0024 5.3E-08 78.8 23.4 126 287-443 343-470 (988)
177 PF02562 PhoH: PhoH-like prote 97.8 0.00012 2.6E-09 74.2 10.0 57 290-346 4-61 (205)
178 PRK12727 flagellar biosynthesi 97.8 0.00076 1.6E-08 77.0 17.4 128 301-451 346-476 (559)
179 TIGR01447 recD exodeoxyribonuc 97.8 0.00019 4.2E-09 84.3 12.7 135 293-441 148-293 (586)
180 KOG1002 Nucleotide excision re 97.8 0.002 4.4E-08 71.0 19.3 88 529-634 661-753 (791)
181 PRK10536 hypothetical protein; 97.7 0.00018 3.8E-09 75.0 10.6 58 288-345 57-115 (262)
182 PRK12724 flagellar biosynthesi 97.7 0.00053 1.1E-08 76.4 14.6 123 305-451 223-351 (432)
183 KOG1803 DNA helicase [Replicat 97.7 9.9E-05 2.1E-09 83.5 8.8 64 291-355 186-250 (649)
184 PRK15483 type III restriction- 97.7 0.00028 6E-09 85.6 13.2 137 305-446 59-240 (986)
185 PF09848 DUF2075: Uncharacteri 97.7 0.00014 3.1E-09 80.7 10.0 94 306-417 2-97 (352)
186 PRK10875 recD exonuclease V su 97.7 0.00022 4.8E-09 84.0 11.4 136 293-442 155-300 (615)
187 cd00009 AAA The AAA+ (ATPases 97.6 0.00087 1.9E-08 63.1 12.9 47 297-344 9-57 (151)
188 PRK14974 cell division protein 97.6 0.00058 1.3E-08 74.7 13.1 124 305-447 140-267 (336)
189 PRK13826 Dtr system oriT relax 97.6 0.009 1.9E-07 74.4 24.3 125 288-443 379-505 (1102)
190 KOG2340 Uncharacterized conser 97.5 0.001 2.2E-08 74.0 13.3 324 284-632 210-670 (698)
191 PF13086 AAA_11: AAA domain; P 97.5 0.00021 4.6E-09 73.7 7.9 66 291-356 2-75 (236)
192 PRK04296 thymidine kinase; Pro 97.5 0.00032 6.9E-09 70.8 8.1 108 305-440 2-112 (190)
193 smart00488 DEXDc2 DEAD-like he 97.5 0.00033 7.1E-09 75.5 8.5 67 289-355 7-82 (289)
194 smart00489 DEXDc3 DEAD-like he 97.5 0.00033 7.1E-09 75.5 8.5 67 289-355 7-82 (289)
195 PF05970 PIF1: PIF1-like helic 97.4 0.00062 1.3E-08 75.9 10.1 118 292-430 3-128 (364)
196 TIGR00596 rad1 DNA repair prot 97.4 0.0012 2.7E-08 79.9 13.2 66 380-446 8-74 (814)
197 KOG0386 Chromatin remodeling c 97.4 0.00025 5.5E-09 84.0 6.9 110 497-633 726-841 (1157)
198 PF13872 AAA_34: P-loop contai 97.3 0.0028 6E-08 67.4 13.3 139 306-445 63-221 (303)
199 PRK14721 flhF flagellar biosyn 97.3 0.0024 5.1E-08 71.8 13.5 126 303-451 189-318 (420)
200 PRK14723 flhF flagellar biosyn 97.3 0.002 4.2E-08 77.1 13.4 124 304-450 184-311 (767)
201 TIGR02760 TraI_TIGR conjugativ 97.3 0.014 3E-07 77.8 22.5 245 288-555 427-685 (1960)
202 PRK06731 flhF flagellar biosyn 97.3 0.0036 7.9E-08 66.5 14.1 125 304-449 74-201 (270)
203 PRK06526 transposase; Provisio 97.3 0.00057 1.2E-08 72.2 7.9 39 301-340 94-132 (254)
204 smart00382 AAA ATPases associa 97.2 0.0011 2.3E-08 61.9 8.1 41 305-346 2-42 (148)
205 PRK10416 signal recognition pa 97.2 0.0058 1.3E-07 66.7 14.1 125 304-447 113-247 (318)
206 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.00074 1.6E-08 71.3 6.5 127 288-417 73-212 (266)
207 PF12340 DUF3638: Protein of u 97.1 0.0024 5.2E-08 65.5 9.9 128 283-413 16-183 (229)
208 TIGR00064 ftsY signal recognit 97.1 0.0044 9.5E-08 66.2 12.4 124 305-447 72-205 (272)
209 smart00311 PWI PWI, domain in 97.0 0.0018 3.9E-08 54.6 6.7 67 9-75 3-69 (74)
210 PRK06995 flhF flagellar biosyn 97.0 0.0065 1.4E-07 69.4 13.2 125 304-451 255-383 (484)
211 KOG1802 RNA helicase nonsense 97.0 0.0013 2.7E-08 75.0 6.6 66 291-356 411-476 (935)
212 TIGR00376 DNA helicase, putati 97.0 0.002 4.4E-08 76.8 8.7 66 290-356 157-223 (637)
213 PF00580 UvrD-helicase: UvrD/R 97.0 0.002 4.4E-08 69.7 8.1 66 292-359 2-70 (315)
214 PRK10867 signal recognition pa 96.9 0.0084 1.8E-07 67.9 12.9 123 306-445 101-226 (433)
215 PRK08181 transposase; Validate 96.9 0.011 2.3E-07 63.0 13.0 48 301-350 102-149 (269)
216 TIGR00959 ffh signal recogniti 96.9 0.0086 1.9E-07 67.8 12.2 123 306-445 100-225 (428)
217 COG1444 Predicted P-loop ATPas 96.8 0.066 1.4E-06 63.8 19.4 120 306-445 232-357 (758)
218 PF13173 AAA_14: AAA domain 96.8 0.0079 1.7E-07 56.5 9.5 26 304-329 1-26 (128)
219 KOG0391 SNF2 family DNA-depend 96.8 0.0065 1.4E-07 73.1 10.5 118 496-637 1275-1394(1958)
220 PRK08727 hypothetical protein; 96.8 0.0069 1.5E-07 63.2 9.9 35 306-341 42-76 (233)
221 PRK07952 DNA replication prote 96.7 0.026 5.5E-07 59.2 13.7 112 306-453 100-213 (244)
222 PF05127 Helicase_RecD: Helica 96.7 0.00066 1.4E-08 67.1 1.5 117 309-445 1-124 (177)
223 PHA03333 putative ATPase subun 96.7 0.023 5E-07 66.5 13.9 143 303-455 185-343 (752)
224 TIGR01425 SRP54_euk signal rec 96.7 0.012 2.6E-07 66.3 11.2 122 306-445 101-225 (429)
225 TIGR03499 FlhF flagellar biosy 96.7 0.0073 1.6E-07 64.9 9.2 86 304-411 193-281 (282)
226 TIGR03015 pepcterm_ATPase puta 96.7 0.0065 1.4E-07 64.6 8.9 55 305-360 43-97 (269)
227 COG0552 FtsY Signal recognitio 96.6 0.018 3.9E-07 61.9 11.7 124 306-447 140-272 (340)
228 PRK08903 DnaA regulatory inact 96.6 0.018 3.8E-07 59.7 11.5 37 304-341 41-77 (227)
229 PRK07003 DNA polymerase III su 96.5 0.018 3.9E-07 68.4 12.0 45 395-441 112-156 (830)
230 PRK06893 DNA replication initi 96.5 0.012 2.7E-07 61.2 9.7 36 304-340 38-73 (229)
231 PRK00771 signal recognition pa 96.5 0.023 4.9E-07 64.6 12.2 120 305-445 95-218 (437)
232 PRK14956 DNA polymerase III su 96.5 0.011 2.4E-07 67.3 9.4 44 398-445 117-160 (484)
233 PF05729 NACHT: NACHT domain 96.5 0.013 2.9E-07 56.8 9.0 52 405-456 84-142 (166)
234 PRK06835 DNA replication prote 96.4 0.019 4.2E-07 62.9 11.0 44 304-349 182-225 (329)
235 PRK12402 replication factor C 96.4 0.037 8.1E-07 60.8 13.3 33 296-328 25-59 (337)
236 PF13307 Helicase_C_2: Helicas 96.4 0.0017 3.7E-08 64.1 2.0 120 496-624 8-143 (167)
237 PHA02533 17 large terminase pr 96.3 0.11 2.3E-06 60.8 16.9 160 287-453 56-219 (534)
238 PRK14949 DNA polymerase III su 96.3 0.023 4.9E-07 68.8 11.4 41 398-440 115-155 (944)
239 PRK05642 DNA replication initi 96.3 0.024 5.3E-07 59.2 10.5 35 306-341 46-80 (234)
240 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.028 6E-07 58.0 10.8 36 304-340 37-72 (226)
241 cd03115 SRP The signal recogni 96.3 0.045 9.8E-07 54.1 11.9 121 307-445 2-125 (173)
242 PRK14964 DNA polymerase III su 96.3 0.023 4.9E-07 65.4 10.8 48 392-441 106-153 (491)
243 PRK08084 DNA replication initi 96.3 0.025 5.5E-07 59.1 10.3 36 305-341 45-80 (235)
244 PRK07994 DNA polymerase III su 96.3 0.013 2.8E-07 69.4 8.8 47 392-440 109-155 (647)
245 PRK14958 DNA polymerase III su 96.2 0.036 7.7E-07 64.5 12.2 43 397-441 114-156 (509)
246 PRK08116 hypothetical protein; 96.2 0.05 1.1E-06 58.0 12.3 36 305-341 114-149 (268)
247 TIGR02881 spore_V_K stage V sp 96.2 0.026 5.6E-07 60.0 10.2 20 306-325 43-62 (261)
248 PRK14961 DNA polymerase III su 96.2 0.023 5.1E-07 63.4 10.1 45 395-441 112-156 (363)
249 PRK09183 transposase/IS protei 96.2 0.037 8.1E-07 58.7 11.1 39 302-341 99-137 (259)
250 PRK12323 DNA polymerase III su 96.1 0.03 6.6E-07 65.7 10.9 45 396-442 118-162 (700)
251 PRK08691 DNA polymerase III su 96.1 0.028 6.2E-07 66.5 10.3 43 397-441 114-156 (709)
252 cd01124 KaiC KaiC is a circadi 96.1 0.02 4.4E-07 57.1 8.0 52 307-361 1-52 (187)
253 PF01695 IstB_IS21: IstB-like 96.1 0.011 2.4E-07 59.0 6.0 114 302-455 44-160 (178)
254 PRK06645 DNA polymerase III su 96.0 0.054 1.2E-06 62.8 11.9 46 392-439 118-163 (507)
255 PRK05707 DNA polymerase III su 95.9 0.034 7.4E-07 61.0 9.7 135 290-442 3-144 (328)
256 PRK09112 DNA polymerase III su 95.9 0.056 1.2E-06 59.9 11.5 47 393-441 132-178 (351)
257 COG3587 Restriction endonuclea 95.9 0.021 4.6E-07 67.4 8.4 53 555-625 482-537 (985)
258 cd01120 RecA-like_NTPases RecA 95.9 0.031 6.7E-07 53.8 8.4 35 308-343 2-36 (165)
259 COG1875 NYN ribonuclease and A 95.9 0.028 6.2E-07 60.7 8.3 57 288-344 226-286 (436)
260 PRK14712 conjugal transfer nic 95.8 0.069 1.5E-06 68.9 13.0 124 289-443 834-967 (1623)
261 PRK14960 DNA polymerase III su 95.8 0.037 7.9E-07 65.1 9.8 42 398-441 114-155 (702)
262 PRK14957 DNA polymerase III su 95.8 0.055 1.2E-06 63.2 11.3 50 390-441 107-156 (546)
263 KOG0388 SNF2 family DNA-depend 95.8 0.062 1.3E-06 62.1 11.0 117 496-636 1043-1160(1185)
264 TIGR02760 TraI_TIGR conjugativ 95.8 0.052 1.1E-06 72.5 12.0 123 288-441 1017-1147(1960)
265 PRK14952 DNA polymerase III su 95.8 0.05 1.1E-06 64.0 10.6 47 393-441 109-155 (584)
266 PRK07764 DNA polymerase III su 95.8 0.049 1.1E-06 66.6 10.9 44 396-441 114-157 (824)
267 PRK00149 dnaA chromosomal repl 95.7 0.072 1.6E-06 61.3 11.8 35 306-341 149-185 (450)
268 PRK12377 putative replication 95.7 0.14 3E-06 53.9 12.7 44 305-350 101-144 (248)
269 PRK13833 conjugal transfer pro 95.7 0.029 6.2E-07 61.2 7.6 56 291-347 129-187 (323)
270 TIGR02640 gas_vesic_GvpN gas v 95.7 0.051 1.1E-06 57.8 9.5 33 294-326 10-42 (262)
271 PRK14969 DNA polymerase III su 95.7 0.086 1.9E-06 61.7 12.0 48 392-441 109-156 (527)
272 COG1484 DnaC DNA replication p 95.6 0.12 2.5E-06 54.8 12.0 116 300-454 100-218 (254)
273 PRK06921 hypothetical protein; 95.6 0.18 4E-06 53.6 13.4 37 304-341 116-153 (266)
274 PRK14951 DNA polymerase III su 95.6 0.059 1.3E-06 63.8 10.3 48 392-441 114-161 (618)
275 PF00004 AAA: ATPase family as 95.5 0.086 1.9E-06 49.0 9.5 19 308-326 1-19 (132)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.066 1.4E-06 51.4 8.8 104 302-443 23-126 (144)
277 KOG0989 Replication factor C, 95.5 0.042 9.1E-07 58.2 7.8 43 399-443 126-168 (346)
278 PRK12900 secA preprotein trans 95.5 0.018 4E-07 69.9 5.7 118 295-413 141-269 (1025)
279 PRK14962 DNA polymerase III su 95.4 0.079 1.7E-06 61.0 10.4 29 300-328 28-59 (472)
280 cd03247 ABCC_cytochrome_bd The 95.4 0.065 1.4E-06 53.3 8.6 129 302-443 25-156 (178)
281 PF13177 DNA_pol3_delta2: DNA 95.4 0.052 1.1E-06 53.3 7.6 52 391-444 91-142 (162)
282 PRK14955 DNA polymerase III su 95.4 0.086 1.9E-06 59.6 10.4 46 392-439 117-162 (397)
283 PRK14963 DNA polymerase III su 95.3 0.12 2.5E-06 60.2 11.5 43 396-440 110-152 (504)
284 PHA02544 44 clamp loader, smal 95.3 0.22 4.8E-06 54.3 13.2 28 298-325 33-63 (316)
285 PRK13709 conjugal transfer nic 95.3 0.14 3.1E-06 66.9 13.3 125 288-443 965-1099(1747)
286 TIGR02782 TrbB_P P-type conjug 95.3 0.06 1.3E-06 58.3 8.5 53 294-347 120-175 (299)
287 PRK08939 primosomal protein Dn 95.3 0.31 6.6E-06 53.0 13.9 112 304-453 155-269 (306)
288 TIGR03345 VI_ClpV1 type VI sec 95.2 0.1 2.3E-06 64.4 11.4 119 307-453 598-727 (852)
289 TIGR02880 cbbX_cfxQ probable R 95.2 0.1 2.2E-06 56.2 9.9 19 305-323 58-76 (284)
290 PRK12422 chromosomal replicati 95.2 0.091 2E-06 60.1 10.0 36 306-342 142-177 (445)
291 COG0553 HepA Superfamily II DN 95.1 0.04 8.7E-07 68.6 7.6 109 499-634 713-826 (866)
292 PRK09111 DNA polymerase III su 95.1 0.079 1.7E-06 62.7 9.5 50 390-441 120-169 (598)
293 COG3421 Uncharacterized protei 95.1 0.071 1.5E-06 60.8 8.6 133 310-446 2-167 (812)
294 PRK06067 flagellar accessory p 95.1 0.078 1.7E-06 55.2 8.6 56 303-361 23-78 (234)
295 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.057 1.2E-06 52.5 7.1 117 302-443 22-139 (157)
296 PRK07133 DNA polymerase III su 95.1 0.15 3.3E-06 61.0 11.8 50 390-441 106-155 (725)
297 KOG3938 RGS-GAIP interacting p 95.1 0.026 5.7E-07 57.6 4.6 60 17-76 262-324 (334)
298 PF05621 TniB: Bacterial TniB 95.1 0.085 1.8E-06 56.4 8.7 119 306-445 62-190 (302)
299 PRK14965 DNA polymerase III su 95.1 0.091 2E-06 62.2 9.8 48 392-441 109-156 (576)
300 TIGR00362 DnaA chromosomal rep 95.1 0.16 3.4E-06 57.7 11.4 35 306-341 137-173 (405)
301 cd01122 GP4d_helicase GP4d_hel 95.1 0.14 2.9E-06 54.6 10.4 54 300-354 25-78 (271)
302 PRK11054 helD DNA helicase IV; 95.0 0.045 9.9E-07 65.8 7.3 71 287-359 193-266 (684)
303 PRK05896 DNA polymerase III su 95.0 0.09 2E-06 61.7 9.4 48 392-441 109-156 (605)
304 PRK07471 DNA polymerase III su 95.0 0.23 5E-06 55.3 12.3 53 390-444 129-181 (365)
305 PRK08533 flagellar accessory p 95.0 0.085 1.9E-06 54.9 8.4 40 302-342 21-60 (230)
306 PRK00411 cdc6 cell division co 94.9 0.12 2.6E-06 58.3 10.0 22 306-327 56-77 (394)
307 CHL00181 cbbX CbbX; Provisiona 94.9 0.14 3E-06 55.2 10.0 21 305-325 59-79 (287)
308 cd03228 ABCC_MRP_Like The MRP 94.9 0.079 1.7E-06 52.4 7.5 127 302-443 25-154 (171)
309 PRK14953 DNA polymerase III su 94.9 0.13 2.9E-06 59.5 10.3 48 390-439 107-154 (486)
310 PTZ00293 thymidine kinase; Pro 94.9 0.12 2.7E-06 52.6 8.8 40 304-344 3-42 (211)
311 PRK10919 ATP-dependent DNA hel 94.9 0.061 1.3E-06 64.9 7.9 67 291-359 3-72 (672)
312 TIGR00678 holB DNA polymerase 94.9 0.12 2.6E-06 51.9 8.8 48 391-440 85-132 (188)
313 PRK13894 conjugal transfer ATP 94.8 0.072 1.6E-06 58.2 7.5 53 293-346 135-190 (319)
314 PRK14087 dnaA chromosomal repl 94.8 0.18 4E-06 57.8 11.1 44 306-351 142-187 (450)
315 cd03222 ABC_RNaseL_inhibitor T 94.8 0.11 2.4E-06 51.8 8.1 110 301-444 21-132 (177)
316 PRK14959 DNA polymerase III su 94.8 0.17 3.7E-06 59.7 10.9 41 397-439 114-154 (624)
317 PRK14088 dnaA chromosomal repl 94.8 0.16 3.4E-06 58.2 10.5 36 306-342 131-168 (440)
318 cd03229 ABC_Class3 This class 94.7 0.018 3.9E-07 57.4 2.4 116 302-428 23-143 (178)
319 PLN03025 replication factor C 94.7 0.16 3.5E-06 55.6 10.1 23 306-328 35-57 (319)
320 PRK14950 DNA polymerase III su 94.7 0.094 2E-06 62.3 8.6 45 394-440 112-156 (585)
321 PF00437 T2SE: Type II/IV secr 94.7 0.045 9.7E-07 58.4 5.4 44 302-346 124-167 (270)
322 PHA02244 ATPase-like protein 94.6 0.18 3.9E-06 55.6 10.0 33 296-328 110-142 (383)
323 PRK13851 type IV secretion sys 94.6 0.05 1.1E-06 60.0 5.8 45 301-347 158-202 (344)
324 PTZ00112 origin recognition co 94.6 0.29 6.2E-06 59.2 12.2 20 307-326 783-802 (1164)
325 TIGR02928 orc1/cdc6 family rep 94.6 0.15 3.3E-06 56.8 9.8 24 670-693 326-349 (365)
326 PF01480 PWI: PWI domain; Int 94.6 0.06 1.3E-06 45.8 5.0 63 15-77 4-71 (77)
327 PF03354 Terminase_1: Phage Te 94.6 0.14 3E-06 59.4 9.7 146 294-445 2-165 (477)
328 PRK06620 hypothetical protein; 94.6 0.1 2.2E-06 53.7 7.5 18 306-323 45-62 (214)
329 TIGR01547 phage_term_2 phage t 94.6 0.22 4.8E-06 56.2 11.0 133 306-446 2-142 (396)
330 PRK04195 replication factor C 94.5 0.26 5.6E-06 57.3 11.7 24 305-328 39-62 (482)
331 PRK14948 DNA polymerase III su 94.5 0.12 2.5E-06 61.7 8.7 44 394-439 113-156 (620)
332 cd03246 ABCC_Protease_Secretio 94.5 0.09 1.9E-06 52.1 6.7 130 302-444 25-156 (173)
333 cd03216 ABC_Carb_Monos_I This 94.5 0.17 3.7E-06 49.6 8.6 118 302-444 23-142 (163)
334 PRK11823 DNA repair protein Ra 94.5 0.069 1.5E-06 61.2 6.6 56 302-360 77-132 (446)
335 PRK07940 DNA polymerase III su 94.5 0.23 5E-06 55.9 10.6 50 391-443 106-155 (394)
336 PF05496 RuvB_N: Holliday junc 94.4 0.16 3.5E-06 52.1 8.4 20 306-325 51-70 (233)
337 KOG1805 DNA replication helica 94.4 0.089 1.9E-06 63.2 7.4 67 289-356 668-735 (1100)
338 cd01130 VirB11-like_ATPase Typ 94.4 0.094 2E-06 52.6 6.6 45 295-341 14-59 (186)
339 PHA03368 DNA packaging termina 94.3 0.59 1.3E-05 55.0 13.6 137 304-453 253-399 (738)
340 COG0541 Ffh Signal recognition 94.2 0.48 1E-05 52.9 12.1 132 306-454 101-236 (451)
341 cd03214 ABC_Iron-Siderophores_ 94.2 0.17 3.8E-06 50.3 8.2 127 302-444 22-158 (180)
342 PRK13900 type IV secretion sys 94.2 0.074 1.6E-06 58.4 5.9 45 301-347 156-200 (332)
343 cd01393 recA_like RecA is a b 94.2 0.1 2.2E-06 53.9 6.7 42 302-343 16-62 (226)
344 PRK09087 hypothetical protein; 94.2 0.32 6.8E-06 50.5 10.3 20 305-324 44-63 (226)
345 KOG2036 Predicted P-loop ATPas 94.2 2.5 5.4E-05 49.5 17.8 278 297-621 264-594 (1011)
346 PRK13341 recombination factor 94.2 0.3 6.5E-06 59.2 11.4 21 306-326 53-73 (725)
347 KOG0391 SNF2 family DNA-depend 94.1 0.14 3.1E-06 62.3 8.2 148 291-445 616-776 (1958)
348 PRK14954 DNA polymerase III su 94.1 0.25 5.4E-06 58.7 10.4 46 394-441 119-164 (620)
349 cd03238 ABC_UvrA The excision 94.1 0.21 4.5E-06 49.7 8.4 120 302-444 18-149 (176)
350 PRK14970 DNA polymerase III su 94.1 0.22 4.8E-06 55.6 9.6 28 298-325 29-59 (367)
351 PRK08451 DNA polymerase III su 94.1 0.31 6.7E-06 56.8 10.9 43 397-441 112-154 (535)
352 PRK06964 DNA polymerase III su 94.1 0.21 4.6E-06 55.0 9.1 53 389-443 119-171 (342)
353 COG2804 PulE Type II secretory 94.1 0.11 2.4E-06 59.0 6.9 41 289-329 240-282 (500)
354 COG1474 CDC6 Cdc6-related prot 94.0 0.25 5.5E-06 55.0 9.7 25 306-331 43-67 (366)
355 PRK14086 dnaA chromosomal repl 94.0 0.17 3.7E-06 59.5 8.6 36 306-341 315-351 (617)
356 TIGR01074 rep ATP-dependent DN 93.9 0.11 2.3E-06 63.0 7.1 66 292-359 3-71 (664)
357 COG3973 Superfamily I DNA and 93.9 0.11 2.3E-06 59.7 6.4 63 295-359 217-284 (747)
358 PRK08769 DNA polymerase III su 93.9 0.33 7.1E-06 53.0 10.1 52 390-443 101-152 (319)
359 PF00265 TK: Thymidine kinase; 93.9 0.14 3.1E-06 50.9 6.7 38 306-344 2-39 (176)
360 COG4962 CpaF Flp pilus assembl 93.9 0.14 3.1E-06 55.4 7.1 54 292-347 159-213 (355)
361 TIGR02397 dnaX_nterm DNA polym 93.9 0.41 8.8E-06 53.1 11.1 48 390-439 105-152 (355)
362 TIGR01075 uvrD DNA helicase II 93.9 0.12 2.5E-06 63.2 7.3 67 291-359 5-74 (715)
363 PF00931 NB-ARC: NB-ARC domain 93.8 0.12 2.7E-06 55.2 6.7 65 297-361 7-77 (287)
364 cd00544 CobU Adenosylcobinamid 93.8 0.26 5.7E-06 48.7 8.4 45 308-356 2-46 (169)
365 COG2812 DnaX DNA polymerase II 93.8 0.078 1.7E-06 61.0 5.3 52 390-445 107-158 (515)
366 COG2256 MGS1 ATPase related to 93.8 0.33 7.2E-06 53.5 9.7 26 301-326 42-69 (436)
367 PF01637 Arch_ATPase: Archaeal 93.8 0.1 2.2E-06 53.5 5.8 31 297-327 10-42 (234)
368 TIGR02012 tigrfam_recA protein 93.8 0.17 3.8E-06 55.1 7.6 46 302-348 52-97 (321)
369 COG0470 HolB ATPase involved i 93.8 0.24 5.3E-06 53.9 9.0 44 397-442 104-147 (325)
370 PRK13342 recombination factor 93.7 0.4 8.7E-06 54.5 10.9 19 307-325 38-56 (413)
371 PRK11773 uvrD DNA-dependent he 93.7 0.15 3.3E-06 62.3 7.8 68 291-360 10-80 (721)
372 PRK05563 DNA polymerase III su 93.7 0.28 6.1E-06 57.9 9.7 37 392-430 109-145 (559)
373 COG0542 clpA ATP-binding subun 93.6 0.39 8.4E-06 57.8 10.7 119 306-452 522-651 (786)
374 PRK14971 DNA polymerase III su 93.6 0.35 7.6E-06 57.7 10.5 49 392-443 111-159 (614)
375 PRK00440 rfc replication facto 93.6 0.69 1.5E-05 50.3 12.1 20 307-326 40-59 (319)
376 PRK05986 cob(I)alamin adenolsy 93.5 0.16 3.4E-06 51.0 6.3 42 303-345 20-61 (191)
377 cd01131 PilT Pilus retraction 93.5 0.093 2E-06 53.3 4.8 37 307-343 3-39 (198)
378 PRK09354 recA recombinase A; P 93.5 0.2 4.3E-06 55.1 7.5 46 302-348 57-102 (349)
379 cd00561 CobA_CobO_BtuR ATP:cor 93.5 0.19 4.1E-06 49.0 6.6 38 307-345 4-41 (159)
380 cd03230 ABC_DR_subfamily_A Thi 93.5 0.18 3.8E-06 50.0 6.6 126 302-442 23-153 (173)
381 cd01121 Sms Sms (bacterial rad 93.5 0.14 3.1E-06 57.1 6.5 50 302-353 79-128 (372)
382 KOG0058 Peptide exporter, ABC 93.4 0.22 4.7E-06 58.7 8.0 43 302-346 491-535 (716)
383 cd03223 ABCD_peroxisomal_ALDP 93.4 0.2 4.4E-06 49.2 6.8 116 302-443 24-147 (166)
384 TIGR02655 circ_KaiC circadian 93.4 0.17 3.6E-06 58.9 7.1 56 302-360 260-315 (484)
385 COG1435 Tdk Thymidine kinase [ 93.4 0.79 1.7E-05 45.9 10.7 103 305-430 4-107 (201)
386 PF00308 Bac_DnaA: Bacterial d 93.4 0.5 1.1E-05 48.8 10.0 102 307-446 36-142 (219)
387 PRK06647 DNA polymerase III su 93.3 0.3 6.5E-06 57.6 9.1 43 395-439 112-154 (563)
388 PRK08699 DNA polymerase III su 93.2 0.51 1.1E-05 51.8 10.3 52 389-442 100-151 (325)
389 PRK06871 DNA polymerase III su 93.2 0.12 2.6E-06 56.4 5.4 51 390-442 95-145 (325)
390 COG2805 PilT Tfp pilus assembl 93.2 0.1 2.2E-06 55.3 4.4 36 304-339 124-159 (353)
391 PF01443 Viral_helicase1: Vira 93.1 0.077 1.7E-06 54.9 3.6 21 308-328 1-21 (234)
392 TIGR02688 conserved hypothetic 93.1 0.29 6.3E-06 54.8 8.1 31 298-328 202-232 (449)
393 TIGR02868 CydC thiol reductant 93.1 0.35 7.6E-06 56.9 9.5 55 386-441 472-526 (529)
394 PRK04841 transcriptional regul 93.1 0.44 9.6E-06 59.8 10.9 133 302-446 29-164 (903)
395 PF13871 Helicase_C_4: Helicas 93.0 0.31 6.7E-06 51.8 7.8 69 548-626 53-123 (278)
396 cd00983 recA RecA is a bacter 93.0 0.25 5.4E-06 53.9 7.3 46 302-348 52-97 (325)
397 PF00158 Sigma54_activat: Sigm 92.9 0.98 2.1E-05 44.6 10.8 39 296-335 13-51 (168)
398 cd01129 PulE-GspE PulE/GspE Th 92.9 0.24 5.3E-06 52.7 6.9 50 293-343 66-117 (264)
399 PHA00729 NTP-binding motif con 92.9 0.43 9.3E-06 49.2 8.4 21 307-327 19-39 (226)
400 PF13555 AAA_29: P-loop contai 92.9 0.12 2.6E-06 41.9 3.5 19 305-323 23-41 (62)
401 TIGR00708 cobA cob(I)alamin ad 92.8 0.23 4.9E-06 49.1 6.1 39 306-345 6-44 (173)
402 TIGR02785 addA_Gpos recombinat 92.8 0.17 3.7E-06 65.3 6.7 65 293-359 4-70 (1232)
403 PF05876 Terminase_GpA: Phage 92.8 0.45 9.7E-06 56.2 9.6 66 291-356 17-85 (557)
404 KOG1132 Helicase of the DEAD s 92.8 0.53 1.2E-05 56.4 9.9 125 286-412 17-257 (945)
405 COG4178 ABC-type uncharacteriz 92.8 0.3 6.5E-06 57.1 7.9 69 384-453 515-583 (604)
406 COG1131 CcmA ABC-type multidru 92.7 0.27 5.8E-06 53.2 7.1 62 380-442 132-194 (293)
407 PF12846 AAA_10: AAA-like doma 92.7 0.13 2.7E-06 55.3 4.6 43 305-348 1-43 (304)
408 COG1702 PhoH Phosphate starvat 92.6 0.25 5.4E-06 53.4 6.5 54 289-342 127-181 (348)
409 PRK10865 protein disaggregatio 92.6 0.84 1.8E-05 56.8 12.0 95 307-428 600-694 (857)
410 cd03239 ABC_SMC_head The struc 92.6 0.21 4.5E-06 49.8 5.5 58 385-443 95-157 (178)
411 PF03237 Terminase_6: Terminas 92.5 1.1 2.4E-05 49.4 11.9 129 309-445 1-138 (384)
412 KOG4439 RNA polymerase II tran 92.4 0.2 4.3E-06 58.3 5.7 164 289-458 324-521 (901)
413 TIGR01073 pcrA ATP-dependent D 92.4 0.27 5.9E-06 60.1 7.5 67 291-359 5-74 (726)
414 cd03213 ABCG_EPDR ABCG transpo 92.4 0.13 2.7E-06 52.1 3.9 60 384-444 111-171 (194)
415 PRK08058 DNA polymerase III su 92.4 0.64 1.4E-05 51.2 9.6 48 392-441 100-147 (329)
416 TIGR03877 thermo_KaiC_1 KaiC d 92.4 0.17 3.7E-06 52.9 4.9 56 302-360 18-73 (237)
417 TIGR02788 VirB11 P-type DNA tr 92.4 0.2 4.4E-06 54.5 5.7 42 302-345 141-182 (308)
418 PRK10436 hypothetical protein; 92.3 0.29 6.2E-06 56.2 7.0 49 291-340 202-252 (462)
419 cd01123 Rad51_DMC1_radA Rad51_ 92.3 0.32 6.8E-06 50.5 6.8 40 302-341 16-60 (235)
420 PRK00080 ruvB Holliday junctio 92.2 0.62 1.3E-05 51.2 9.3 21 306-326 52-72 (328)
421 TIGR01420 pilT_fam pilus retra 92.1 0.22 4.8E-06 55.1 5.7 41 304-345 121-162 (343)
422 PRK07399 DNA polymerase III su 92.1 1.6 3.4E-05 47.8 12.1 51 389-442 111-161 (314)
423 PF14532 Sigma54_activ_2: Sigm 92.1 0.55 1.2E-05 44.5 7.6 35 294-329 10-44 (138)
424 PRK06090 DNA polymerase III su 91.9 0.86 1.9E-05 49.7 9.7 51 391-443 97-147 (319)
425 PRK06305 DNA polymerase III su 91.9 0.65 1.4E-05 53.4 9.2 31 298-328 29-62 (451)
426 COG2109 BtuR ATP:corrinoid ade 91.8 0.87 1.9E-05 45.2 8.6 137 305-446 28-167 (198)
427 PRK05800 cobU adenosylcobinami 91.8 0.58 1.2E-05 46.3 7.6 47 307-357 3-49 (170)
428 TIGR00602 rad24 checkpoint pro 91.8 0.77 1.7E-05 54.7 9.9 23 304-326 109-131 (637)
429 COG2255 RuvB Holliday junction 91.8 0.35 7.5E-06 51.0 6.1 19 306-324 53-71 (332)
430 TIGR02974 phageshock_pspF psp 91.8 1.2 2.6E-05 49.0 10.9 35 294-329 11-45 (329)
431 PF06745 KaiC: KaiC; InterPro 91.8 0.19 4E-06 52.1 4.3 39 303-341 17-55 (226)
432 PRK13538 cytochrome c biogenes 91.7 0.35 7.5E-06 49.2 6.2 59 384-443 129-188 (204)
433 COG3598 RepA RecA-family ATPas 91.7 0.74 1.6E-05 49.3 8.5 69 295-363 78-158 (402)
434 COG1134 TagH ABC-type polysacc 91.7 0.16 3.4E-06 52.5 3.5 141 302-444 50-207 (249)
435 TIGR03346 chaperone_ClpB ATP-d 91.6 1.1 2.4E-05 55.8 11.6 119 306-451 596-724 (852)
436 PF03266 NTPase_1: NTPase; In 91.6 1.7 3.7E-05 42.8 10.7 21 307-327 1-21 (168)
437 COG1132 MdlB ABC-type multidru 91.5 0.5 1.1E-05 56.1 8.2 55 386-441 467-521 (567)
438 KOG2228 Origin recognition com 91.5 2.4 5.1E-05 46.0 12.0 127 304-446 48-183 (408)
439 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.4 0.94 2E-05 47.1 9.3 58 384-442 139-196 (238)
440 CHL00095 clpC Clp protease ATP 91.4 0.54 1.2E-05 58.3 8.5 25 307-332 541-565 (821)
441 PRK11174 cysteine/glutathione 91.4 1.1 2.3E-05 53.5 10.8 59 385-444 486-544 (588)
442 TIGR03522 GldA_ABC_ATP gliding 91.4 0.39 8.5E-06 52.1 6.5 65 380-445 129-193 (301)
443 cd03215 ABC_Carb_Monos_II This 91.4 0.97 2.1E-05 45.0 8.9 58 385-443 105-163 (182)
444 COG4608 AppF ABC-type oligopep 91.3 1.1 2.4E-05 47.2 9.3 131 302-445 36-171 (268)
445 TIGR02538 type_IV_pilB type IV 91.2 0.42 9.1E-06 56.6 7.0 50 289-339 298-349 (564)
446 PRK15177 Vi polysaccharide exp 91.2 0.33 7.1E-06 49.9 5.4 38 382-420 102-139 (213)
447 TIGR00635 ruvB Holliday juncti 91.2 0.78 1.7E-05 49.7 8.6 20 306-325 31-50 (305)
448 KOG0991 Replication factor C, 91.1 0.43 9.3E-06 48.7 5.8 19 306-324 49-67 (333)
449 TIGR02524 dot_icm_DotB Dot/Icm 91.0 0.25 5.4E-06 54.9 4.6 31 298-329 126-157 (358)
450 TIGR02238 recomb_DMC1 meiotic 91.0 0.51 1.1E-05 51.5 6.9 40 303-342 94-138 (313)
451 TIGR02533 type_II_gspE general 91.0 0.39 8.5E-06 55.6 6.3 51 289-340 224-276 (486)
452 cd03237 ABC_RNaseL_inhibitor_d 91.0 0.43 9.4E-06 50.2 6.2 59 383-443 114-175 (246)
453 TIGR03375 type_I_sec_LssB type 90.9 0.76 1.6E-05 56.0 9.1 59 385-444 602-660 (694)
454 PRK05973 replicative DNA helic 90.9 0.25 5.4E-06 51.5 4.2 57 296-354 55-111 (237)
455 COG0593 DnaA ATPase involved i 90.9 2.1 4.6E-05 48.0 11.6 43 402-446 175-220 (408)
456 cd03226 ABC_cobalt_CbiO_domain 90.8 0.58 1.3E-05 47.6 6.8 60 383-443 125-185 (205)
457 COG1122 CbiO ABC-type cobalt t 90.8 0.21 4.5E-06 52.1 3.4 22 302-323 27-48 (235)
458 TIGR03689 pup_AAA proteasome A 90.7 0.64 1.4E-05 53.9 7.7 24 304-328 215-238 (512)
459 PRK05580 primosome assembly pr 90.7 0.54 1.2E-05 56.9 7.4 74 497-579 190-263 (679)
460 COG1110 Reverse gyrase [DNA re 90.7 0.73 1.6E-05 56.1 8.2 77 487-566 115-191 (1187)
461 KOG0780 Signal recognition par 90.6 1.7 3.7E-05 47.7 10.1 123 306-445 102-226 (483)
462 COG1119 ModF ABC-type molybden 90.6 0.79 1.7E-05 47.5 7.3 58 384-442 171-231 (257)
463 cd03254 ABCC_Glucan_exporter_l 90.6 0.95 2.1E-05 46.8 8.2 60 384-444 139-198 (229)
464 COG1098 VacB Predicted RNA bin 90.5 0.076 1.6E-06 48.5 -0.0 22 85-106 5-29 (129)
465 cd00984 DnaB_C DnaB helicase C 90.5 0.25 5.4E-06 51.6 3.8 41 301-341 9-49 (242)
466 TIGR03819 heli_sec_ATPase heli 90.5 0.59 1.3E-05 51.6 6.9 52 293-346 165-217 (340)
467 KOG2028 ATPase related to the 90.5 0.67 1.5E-05 50.3 6.9 26 301-326 156-183 (554)
468 PLN03187 meiotic recombination 90.4 0.5 1.1E-05 52.1 6.2 40 303-342 124-168 (344)
469 TIGR00631 uvrb excinuclease AB 90.3 0.9 1.9E-05 54.6 8.6 65 293-361 12-81 (655)
470 COG4555 NatA ABC-type Na+ tran 90.3 0.65 1.4E-05 46.7 6.1 21 302-322 25-45 (245)
471 TIGR03878 thermo_KaiC_2 KaiC d 90.2 0.37 8E-06 51.1 4.9 38 303-341 34-71 (259)
472 cd03263 ABC_subfamily_A The AB 90.2 1.8 3.9E-05 44.4 9.9 58 384-442 133-190 (220)
473 KOG0741 AAA+-type ATPase [Post 90.2 1.4 3.1E-05 50.1 9.4 103 307-447 540-652 (744)
474 PRK13764 ATPase; Provisional 90.2 0.38 8.2E-06 56.8 5.3 48 298-346 249-297 (602)
475 TIGR01189 ccmA heme ABC export 90.2 0.57 1.2E-05 47.4 6.0 57 385-442 128-185 (198)
476 PRK09544 znuC high-affinity zi 90.2 0.33 7.2E-06 51.2 4.4 60 383-444 119-181 (251)
477 PRK10917 ATP-dependent DNA hel 90.1 0.98 2.1E-05 54.8 9.0 78 497-579 310-388 (681)
478 PRK04301 radA DNA repair and r 90.1 0.55 1.2E-05 51.4 6.2 41 302-342 99-144 (317)
479 cd03369 ABCC_NFT1 Domain 2 of 90.1 0.48 1E-05 48.2 5.4 60 384-444 125-184 (207)
480 cd03300 ABC_PotA_N PotA is an 90.0 1.5 3.3E-05 45.4 9.3 60 383-443 129-190 (232)
481 PRK13695 putative NTPase; Prov 90.0 1.5 3.3E-05 43.3 8.8 20 307-326 2-21 (174)
482 PRK05564 DNA polymerase III su 90.0 1.6 3.6E-05 47.5 9.8 44 396-441 87-130 (313)
483 TIGR02204 MsbA_rel ABC transpo 90.0 1 2.2E-05 53.5 8.9 59 385-444 477-535 (576)
484 cd03248 ABCC_TAP TAP, the Tran 89.9 1.3 2.8E-05 45.7 8.6 60 384-444 150-209 (226)
485 PF13481 AAA_25: AAA domain; P 89.9 0.75 1.6E-05 46.0 6.6 55 303-358 30-93 (193)
486 COG1222 RPT1 ATP-dependent 26S 89.9 1.7 3.6E-05 47.5 9.3 40 281-322 159-202 (406)
487 PRK07993 DNA polymerase III su 89.9 0.28 6E-06 54.0 3.7 52 389-442 95-146 (334)
488 PRK13541 cytochrome c biogenes 89.9 0.24 5.2E-06 50.0 3.0 57 385-442 124-181 (195)
489 PF13207 AAA_17: AAA domain; P 89.9 0.34 7.4E-06 44.5 3.8 19 307-325 1-19 (121)
490 PHA00350 putative assembly pro 89.8 1.6 3.4E-05 49.0 9.5 31 307-337 3-33 (399)
491 COG3267 ExeA Type II secretory 89.8 1.9 4.2E-05 44.9 9.3 30 299-329 44-74 (269)
492 TIGR02237 recomb_radB DNA repa 89.8 0.37 7.9E-06 49.1 4.3 40 303-343 10-49 (209)
493 cd03233 ABC_PDR_domain1 The pl 89.8 0.25 5.4E-06 50.3 3.0 46 383-429 117-162 (202)
494 TIGR00665 DnaB replicative DNA 89.8 1.3 2.8E-05 50.7 9.2 56 298-354 188-243 (434)
495 PF02463 SMC_N: RecF/RecN/SMC 89.7 1.7 3.7E-05 44.6 9.3 43 400-443 156-198 (220)
496 cd01394 radB RadB. The archaea 89.7 0.39 8.5E-06 49.3 4.5 37 303-340 17-53 (218)
497 TIGR01817 nifA Nif-specific re 89.7 1.9 4.2E-05 50.8 10.8 33 296-329 210-242 (534)
498 PTZ00035 Rad51 protein; Provis 89.7 0.86 1.9E-05 50.3 7.3 38 304-341 117-159 (337)
499 PRK11034 clpA ATP-dependent Cl 89.7 1.1 2.3E-05 54.8 8.7 18 307-324 490-507 (758)
500 TIGR00595 priA primosomal prot 89.7 0.73 1.6E-05 53.8 7.1 74 497-579 25-98 (505)
No 1
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-140 Score=1141.66 Aligned_cols=648 Identities=50% Similarity=0.854 Sum_probs=590.5
Q ss_pred ccCccccCCC-CCCchhhhhcccCCCCCCCceeEEEecCCCCCccccceeeeccCCccccccCCCCchHHHHHHhhHHHH
Q 003721 131 VSGVLASNEY-PRYDEEEEEGFASWAEGDEEELEIELSEDQPAFLQGQTRVSVDLSPVKVFKNPEGSLSRTAALQSALTK 209 (800)
Q Consensus 131 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~fl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (800)
.|||+.+.|+ ++|++ +++.+ ++|++..||||+|+.+++++.+||.+++||+++||..|++||.+++
T Consensus 216 ~sgvv~~~e~~~~f~~-----------~e~~~--llv~~i~~~fld~r~~~~k~~~~v~pv~d~~sd~a~~a~~gs~lv~ 282 (1042)
T KOG0924|consen 216 TSGVVQRMEVISDFLS-----------DEARE--LLVHNIVPPFLDGREVFTKQAEPVIPVRDPTSDLAISARRGSKLVR 282 (1042)
T ss_pred chhhhhcccccCccch-----------hhHHH--hhhhcccCCccccceeeecccccccccCCCchhhhhhhhccccHHH
Confidence 8999988775 22222 22222 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcccCCCCCCCCCchhhhHHHHHHhhcCCC-CCCcchHHHhhhc-CCCCcCcCChhHHHHHHh
Q 003721 210 ERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLS-ARDMPEWKKNAYG-KAFTFGQRSKLSIQEQRR 287 (800)
Q Consensus 210 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~ 287 (800)
++|+.+++.+.. ..+|....+.+++....++-.+-+-+ .-.-+........ ...........++.+||+
T Consensus 283 ~~r~~~~~~k~~---------~~~~~~~~~~lgn~~glek~~~ed~~~~~~~~~~~a~h~k~~~a~~~fa~~k~i~eqrq 353 (1042)
T KOG0924|consen 283 ERREKEERKKAQ---------KKHWKLAGTALGNVMGLEKKNDEDGKVAYRGSVKFASHMKKSEAVSEFASKKSIREQRQ 353 (1042)
T ss_pred HHHHhhhhhhhh---------hhhhhhcchhhccccccccCcccccccccccchhhhhccccccccccccccchHHHHHh
Confidence 999998877654 34666555554443322211110000 0000000011110 101111233456999999
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceee
Q 003721 288 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG 367 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg 367 (800)
.||++..+.+++..|.+|+++||+|+||||||||++|||++.++..+|.|+|+||||++|+++|+|+++++|..+|..||
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChH
Q 003721 368 YAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAE 447 (800)
Q Consensus 368 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~ 447 (800)
|++||++++++.|.|.|||+|+|+++.+.+..|.+|++||+||||||++++|+++++++.++.+|.++++|++|||+++.
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~ 513 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQ 513 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 003721 448 RFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKD 527 (800)
Q Consensus 448 ~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~ 527 (800)
+|++||++||.|.+|||+|||++.|...+..+|++.++.+.++||...++|+||||++++++++.++..+.+.+.++...
T Consensus 514 kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~ 593 (1042)
T KOG0924|consen 514 KFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA 593 (1042)
T ss_pred HHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred -CCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHH
Q 003721 528 -VPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA 606 (800)
Q Consensus 528 -~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~ 606 (800)
..++.|+|+|++||.+.|.+||++.+.|.+||||||||||++++||+|.||||+|++|.++|||+.||+.|.+.|+|++
T Consensus 594 ~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 594 PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 2379999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 003721 607 SALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLY 686 (800)
Q Consensus 607 ~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~~i~~al~~L~ 686 (800)
++.||+|||||+|||.||||||+..|.++|.+.++|||||+||.+++|+||++|+.|++.|+|||||+.+.+.+|+..||
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw 753 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLW 753 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCcCchhHHHHHHHHHhhcCCCCCCH
Q 003721 687 SLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDH 766 (800)
Q Consensus 687 ~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~D~ 766 (800)
.+||||+.|.||++|+.|++|||||.++|||+.++.+||++|||+||+|||++.+|+||++++++++++|++|++++|||
T Consensus 754 ~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDh 833 (1042)
T KOG0924|consen 754 TLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDH 833 (1042)
T ss_pred HhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHhhcCChhhhhhcC
Q 003721 767 LTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKTA 800 (800)
Q Consensus 767 ~~~l~~~~~~~~~~~~~~wc~~~~~~~~~~~~a~ 800 (800)
|||||||++|++++++..||++||||.++|++|+
T Consensus 834 LTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~ar 867 (1042)
T KOG0924|consen 834 LTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAR 867 (1042)
T ss_pred hhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999985
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-127 Score=1040.99 Aligned_cols=523 Identities=61% Similarity=1.036 Sum_probs=515.9
Q ss_pred ChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCe-EEEecchHHHHHHHHHHHHH
Q 003721 278 SKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK-IGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 278 ~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~-il~~~P~r~la~qva~rv~~ 356 (800)
...++++.|++||||+++.+++.++.+++++||+|+||||||||+||||.+.+++.+++ |.|+||||++|+++|.||++
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999886 99999999999999999999
Q ss_pred HhCCcccceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCce
Q 003721 357 EFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 357 ~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~k 436 (800)
++|+.+|..|||+++|++|++..|.|+|||+|||+++++.++.|..|++|||||||||++++|+|+++++.+.+.||+++
T Consensus 333 EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred HhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCChHHHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 437 LIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 437 iI~lSATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
++++|||+++++|+.||.++|+|.+|||.|||+++|...|..+|+++++.++++||.+++.|+||||++++++++.+.+.
T Consensus 413 llIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~ 492 (902)
T KOG0923|consen 413 LLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKEN 492 (902)
T ss_pred EEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
|.+++..+|.....+.++|+|++||.+.|.+||++.++|.+|||+||||||++|+|++|.||||+|++|++.|||++||.
T Consensus 493 l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGme 572 (902)
T KOG0923|consen 493 LKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGME 572 (902)
T ss_pred HHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCCCCChH
Q 003721 597 SLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQ 676 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~ 676 (800)
+|.+.|+|.+++.||+|||||+|||+||||||...|.+++...++|||+|+||.+++|.||++||+|+++|+||||||.+
T Consensus 573 sL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~e 652 (902)
T KOG0923|consen 573 SLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTE 652 (902)
T ss_pred eEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccC-CCCCcCchhHHHHHHHH
Q 003721 677 ALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQT-GHIFTRPRERQAKADEK 755 (800)
Q Consensus 677 ~i~~al~~L~~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~-~~~f~~p~~~~~~~~~~ 755 (800)
++..|++.|+.||||+..|+||.+||.|++||+||.++|||+.|-..+|++||++|+||||+ .++|++|++++--||.+
T Consensus 653 tL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a 732 (902)
T KOG0923|consen 653 TLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNA 732 (902)
T ss_pred HHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999 56999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCChhHHHhhcCChhhhhhcC
Q 003721 756 RARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKTA 800 (800)
Q Consensus 756 ~~~f~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~~~~~~~~~a~ 800 (800)
|..|..+.|||+++|+||++|...+++.+||.+||+++++|+||+
T Consensus 733 ~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rar 777 (902)
T KOG0923|consen 733 RKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRAR 777 (902)
T ss_pred hhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999985
No 3
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-125 Score=1041.20 Aligned_cols=538 Identities=66% Similarity=1.085 Sum_probs=524.1
Q ss_pred chHHHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe
Q 003721 261 PEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT 340 (800)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~ 340 (800)
|+|..........++.....++.++|+.|||++++.+++.++.+|+++||+|+||||||||+|||+++.++...|+|.|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~T 101 (674)
T KOG0922|consen 22 PEWKGAVPNGAQSYGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACT 101 (674)
T ss_pred chhcccccccccccccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEee
Confidence 77776665444556677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch
Q 003721 341 QPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV 420 (800)
Q Consensus 341 ~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~ 420 (800)
||||++|+++|+||++++|+.+|..|||++||+++++..|+|+|+|+|+|+|+++.|+.|++|++|||||||||++++|+
T Consensus 102 QPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDi 181 (674)
T KOG0922|consen 102 QPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDI 181 (674)
T ss_pred cCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeccCCChHHHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCE
Q 003721 421 LFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDI 500 (800)
Q Consensus 421 l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~i 500 (800)
++++||++.+.++++|+|+||||+++++|++||.+||++.++||.|||++.|.+.+..+|+++.+.++++||.++++|+|
T Consensus 182 LlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDI 261 (674)
T KOG0922|consen 182 LLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDI 261 (674)
T ss_pred HHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEe
Q 003721 501 LLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVID 580 (800)
Q Consensus 501 LVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId 580 (800)
|||++|+++++.+++.|.+..+.+..+.+. .++|+||+||.++|.+||++.+.|.+|||+||||||++||||+|.||||
T Consensus 262 LvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 262 LVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 999999999999999999999888877777 8999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcC
Q 003721 581 PGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMG 660 (800)
Q Consensus 581 ~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~ 660 (800)
+|++|++.|||+.|++.|.+.|+|++++.||+|||||+|||+|||||++++| +.|++.++|||+|.||+.++|+||++|
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalg 419 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALG 419 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999 689999999999999999999999999
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCcccCCccch-hhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCC
Q 003721 661 INNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTK-LGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTG 739 (800)
Q Consensus 661 i~~~~~f~~~~~p~~~~i~~al~~L~~lgald~~g~lT~-lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~ 739 (800)
++|++.|+|+|||+.+++..|++.|+.+||||++|.||. +|+.|++||++|.++|+|+.|..+||++|+++|+||||++
T Consensus 420 i~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~ 499 (674)
T KOG0922|consen 420 INDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQ 499 (674)
T ss_pred CCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeecc
Confidence 999999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCcCchhHHHH-HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCChhHHHhhcCChhhhhhcC
Q 003721 740 HIFTRPRERQAK-ADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKTA 800 (800)
Q Consensus 740 ~~f~~p~~~~~~-~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~~~~~~~~~a~ 800 (800)
++|++|.+++.+ ++.+|++|++++|||+|+||+|..|.+++.+.+||.+||||+++|++|+
T Consensus 500 ~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~ 561 (674)
T KOG0922|consen 500 SVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAK 561 (674)
T ss_pred ceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHH
Confidence 999999999888 9999999999999999999999999999999999999999999999983
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-114 Score=910.35 Aligned_cols=518 Identities=56% Similarity=0.940 Sum_probs=505.1
Q ss_pred CChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH
Q 003721 277 RSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 277 ~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~ 356 (800)
.....+.+.|..||+|.++.+.++.+.+||.++++|+||||||||+|||+++......+.|.|+||+|++|+++|.|+++
T Consensus 34 ~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVad 113 (699)
T KOG0925|consen 34 QRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVAD 113 (699)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999998887778999999999999999999999
Q ss_pred HhCCcccceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCce
Q 003721 357 EFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 357 ~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~k 436 (800)
+++..+|.+|||.++|++|++++|.+.|||+|||+|+..+++.+.+|++||+||||||++.+|.+.++++.+...+|++|
T Consensus 114 EMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk 193 (699)
T KOG0925|consen 114 EMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLK 193 (699)
T ss_pred HhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCChHHHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 437 LIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 437 iI~lSATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
+|+||||++..+|..||+++|++.+|| ++|++++|.+++..||+++++.++++||..+.+|+||||+++.++|+.+|+.
T Consensus 194 ~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~ 272 (699)
T KOG0925|consen 194 LVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRK 272 (699)
T ss_pred EEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC-----CceEEEeccchhhcCCCCCeeEEEeCCCccceeecC
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG-----GRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNP 591 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g-----~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~ 591 (800)
+......++.+...+.+.|+| +.++.+||++.+.. .+||+|+||+++++++|++|.+|||+|+.|+++|||
T Consensus 273 i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNP 348 (699)
T KOG0925|consen 273 ISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNP 348 (699)
T ss_pred HHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCc
Confidence 998888999988899999999 77888999987743 579999999999999999999999999999999999
Q ss_pred CCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCC
Q 003721 592 KQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVD 671 (800)
Q Consensus 592 ~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~ 671 (800)
+.+..+|.+.|+|++++.||+|||||+.||+||+|||++.|..+|.+.+.|||+|+||++++|+||.+||.++.+|+|||
T Consensus 349 RIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmD 428 (699)
T KOG0925|consen 349 RIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMD 428 (699)
T ss_pred ceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCcCch-hHHH
Q 003721 672 PPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPR-ERQA 750 (800)
Q Consensus 672 ~p~~~~i~~al~~L~~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~~p~-~~~~ 750 (800)
||.++++..|++.|..++|||++|+||++|..|++||+||.+|||||.|++|.|++|+|+|.||||++++|.||. +-++
T Consensus 429 pPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~k 508 (699)
T KOG0925|consen 429 PPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASK 508 (699)
T ss_pred CCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7788
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCChhHHHhhcCChhhhhhc
Q 003721 751 KADEKRARFFQPEGDHLTLLAVYEAWKAKNFSLPWCGENFVNSRSLKKT 799 (800)
Q Consensus 751 ~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~~~~~~~~~a 799 (800)
.|+.+++.|.|++|||+||||||.+|++++...+||++||||+++|+.|
T Consensus 509 aAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~A 557 (699)
T KOG0925|consen 509 AADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSA 557 (699)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhH
Confidence 8999999999999999999999999999999999999999999999987
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-100 Score=890.25 Aligned_cols=516 Identities=51% Similarity=0.810 Sum_probs=488.7
Q ss_pred ChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHH
Q 003721 278 SKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE 357 (800)
Q Consensus 278 ~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~ 357 (800)
+...+.+++..||++..+.+++.++.+++++||+||||||||||+|+++++.++..+++|+|++|||.+|.++|+|++++
T Consensus 38 ~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 38 NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred ccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHH
Confidence 34466788999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred hCCcccceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCC-Cce
Q 003721 358 FGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRP-DLR 436 (800)
Q Consensus 358 ~g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~-~~k 436 (800)
+|+++|..|||.+||++..++.|+|+|||+|+|+++++.|+.|+.|++|||||||||++++|+++++++.+...++ ++|
T Consensus 118 l~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 118 LGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred hCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999776655 899
Q ss_pred EEEeccCCChHHHhhhhcCCCcccCCCCccceeEEeccccchhh-HHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 003721 437 LIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDY-LDSALITVLQIHVDEPEGDILLFLTGQEEIDFACE 515 (800)
Q Consensus 437 iI~lSATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~-~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~ 515 (800)
+|+||||++.++|++||.++|++.++||.|||+++|.+....++ ++..+...+.++..++.|+||||+|++.+|+.+++
T Consensus 198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred EEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCc
Q 003721 516 SLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRL 595 (800)
Q Consensus 516 ~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~ 595 (800)
.|.+ ..++ +...|+|+||.|+.++|.++|++.+.|++|||+||||||+|||||+|+||||+|+.|.+.||+++|+
T Consensus 278 ~L~~--~~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 278 WLEK--AELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHh--cccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 9987 1222 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCC-CcccccCCCCCC
Q 003721 596 DSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGIN-NLLSFDFVDPPS 674 (800)
Q Consensus 596 ~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~-~~~~f~~~~~p~ 674 (800)
..|.+.|+|++++.||+|||||++||+||+||++++|. .|+.++.|||.|+||++++|+++++|+. |+..|+|+|||+
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~ 431 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPP 431 (845)
T ss_pred eeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCC
Confidence 99999999999999999999999999999999999998 8999999999999999999999999995 999999999999
Q ss_pred hHHHHHHHHHHHHcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCC---CCcCchhHHH-
Q 003721 675 PQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH---IFTRPRERQA- 750 (800)
Q Consensus 675 ~~~i~~al~~L~~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~---~f~~p~~~~~- 750 (800)
..++..|++.|+.+||||.+|.||++|+.|+.||++|++|+||+.+...+|+.++++|+||||+++ .|.++.+.+.
T Consensus 432 ~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~ 511 (845)
T COG1643 432 EAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQ 511 (845)
T ss_pred hHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6888776555
Q ss_pred --HHHHHH-hhcCC---CCCCHHHHHHHHHHHHHcC------CChhHHHhhcCChhhhhhc
Q 003721 751 --KADEKR-ARFFQ---PEGDHLTLLAVYEAWKAKN------FSLPWCGENFVNSRSLKKT 799 (800)
Q Consensus 751 --~~~~~~-~~f~~---~~~D~~~~l~~~~~~~~~~------~~~~wc~~~~~~~~~~~~a 799 (800)
..+.++ .++.. +.+||+++|++|..|.... ...+||..++++.++|.++
T Consensus 512 ~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 572 (845)
T COG1643 512 RTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRA 572 (845)
T ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhh
Confidence 333333 44555 7899999999999999887 6779999999999999876
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.5e-95 Score=878.49 Aligned_cols=508 Identities=41% Similarity=0.680 Sum_probs=470.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 003721 283 QEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRL 362 (800)
Q Consensus 283 ~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~ 362 (800)
..++..|||+.++.++++++.+|++++|+|+|||||||++|+++++.+....+.|+|++|+|.+|.++|.+++++++..+
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 34577899999999999999999999999999999999999999987666667999999999999999999999999999
Q ss_pred cceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
|..|||.+++++..+.++.|+|||+|+|++++..++.+++|++|||||||||++++|+++++++.+...+|++|+|+|||
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSA 226 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA 226 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCChHHHhhhhcCCCcccCCCCccceeEEeccccc------hhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 443 TLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEV------TDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 443 Tl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~------~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
|++.+.|+++|.++|++.++|+.+|+++.|..... .+++...+..+..++ ...+|++||||||+.+|+.+++.
T Consensus 227 Tid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~ 305 (1294)
T PRK11131 227 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADA 305 (1294)
T ss_pred CCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999999999999999986542 234444444444443 45679999999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
|... +.+...+.++||+|++++|.++|+. .|.++||||||+||+|||||+|+||||+|++|.+.||++.+++
T Consensus 306 L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~ 377 (1294)
T PRK11131 306 LNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQ 377 (1294)
T ss_pred HHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcc
Confidence 9764 2335678999999999999999997 5889999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCCCCChH
Q 003721 597 SLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQ 676 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~ 676 (800)
.|...|+|+++|.||+|||||.++|.||+||++++|. .+++++.|||+|++|.+++|+++++|+.++..|+|++||+..
T Consensus 378 ~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~-~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~ 456 (1294)
T PRK11131 378 RLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFL-SRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 456 (1294)
T ss_pred cCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHH-hhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHH
Confidence 9999999999999999999999999999999999996 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccC-----CccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCcCchhHHHH
Q 003721 677 ALISAMEQLYSLGALDEE-----GLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAK 751 (800)
Q Consensus 677 ~i~~al~~L~~lgald~~-----g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~ 751 (800)
++..|++.|+.+||||.+ ++||++|+.|++||+||.+||||+.|..++|++|+++|+||||++++|.+|.+++++
T Consensus 457 ~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~ 536 (1294)
T PRK11131 457 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQA 536 (1294)
T ss_pred HHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHH
Confidence 999999999999999864 579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHcCC------ChhHHHhhcCChhhhhhcC
Q 003721 752 ADEKRARFFQPEGDHLTLLAVYEAWKAKNF------SLPWCGENFVNSRSLKKTA 800 (800)
Q Consensus 752 ~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~------~~~wc~~~~~~~~~~~~a~ 800 (800)
++.++++|.+++|||+|+||+|+.|..... ..+||++||||+++|++++
T Consensus 537 a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~ 591 (1294)
T PRK11131 537 SDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQ 591 (1294)
T ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999975321 2479999999999999873
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-93 Score=865.62 Aligned_cols=507 Identities=43% Similarity=0.715 Sum_probs=470.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 003721 283 QEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRL 362 (800)
Q Consensus 283 ~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~ 362 (800)
..++..|||+.++.+++.++.+|+++||+|+|||||||++|+++++.+....++|+|++|+|.+|.++|.++++++|..+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 45567899999999999999999999999999999999999999998766677999999999999999999999999999
Q ss_pred cceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
|..|||.++++++.+.++.|+|+|+|+|++++..++.+.+|++|||||||||++++|+++++++.+...++++|+|+|||
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSA 219 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSA 219 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CCChHHHhhhhcCCCcccCCCCccceeEEeccccc------hhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 443 TLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEV------TDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 443 Tl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~------~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
|++.+.|+++|.++|++.++|+.+|+++.|..... .++....+..+..++. ..+|+||||+||+.+|+.+++.
T Consensus 220 Tld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~ 298 (1283)
T TIGR01967 220 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEI 298 (1283)
T ss_pred CcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999976432 1344444444444433 3579999999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
|.+. ..+++.+.++||+|+.++|.++|+.+ +.++||||||++|+|||||+|+||||+|+.+.+.||++.|+.
T Consensus 299 L~~~------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 299 LRKR------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHhc------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 9764 12357899999999999999999875 358999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCCCCChH
Q 003721 597 SLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQ 676 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~ 676 (800)
.|...|+|+++|.||+|||||.++|+||+||++++|.. +.+++.|||+|++|.+++|+++++|+.++..|+|+|||+..
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~ 449 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPR 449 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHH
Confidence 99999999999999999999999999999999999965 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccCC---ccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCcCchhHHHHHH
Q 003721 677 ALISAMEQLYSLGALDEEG---LLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKAD 753 (800)
Q Consensus 677 ~i~~al~~L~~lgald~~g---~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~ 753 (800)
++..|++.|+.+||||++| .||++|+.|+.||++|.+|+||+.|..++|++++++|+|+||++++|.+|.+++++++
T Consensus 450 ~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~ 529 (1283)
T TIGR01967 450 AIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAAD 529 (1283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHH
Confidence 9999999999999999998 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHcC------CChhHHHhhcCChhhhhhc
Q 003721 754 EKRARFFQPEGDHLTLLAVYEAWKAKN------FSLPWCGENFVNSRSLKKT 799 (800)
Q Consensus 754 ~~~~~f~~~~~D~~~~l~~~~~~~~~~------~~~~wc~~~~~~~~~~~~a 799 (800)
+++++|.++.|||++++|+|+.|.... ....||.+||||+.+|+++
T Consensus 530 ~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~ 581 (1283)
T TIGR01967 530 QAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREW 581 (1283)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHH
Confidence 999999999999999999999997642 2358999999999999986
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-90 Score=766.61 Aligned_cols=523 Identities=44% Similarity=0.694 Sum_probs=482.6
Q ss_pred cCChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-----CCeEEEecchHHHHHHH
Q 003721 276 QRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-----KGKIGCTQPRRVAATSV 350 (800)
Q Consensus 276 ~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-----~~~il~~~P~r~la~qv 350 (800)
......+++.|..|||...-++++++|..|.+|||||+||||||||+||+|+++++.. +|.|.+++|||++|..+
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999875 46999999999999999
Q ss_pred HHHHHHHhCCcccceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh
Q 003721 351 AKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK 430 (800)
Q Consensus 351 a~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~ 430 (800)
|+||+.++|. +|..|||.+||+...+++|.|+|||+|+|++++.+|..|.+|++|||||||||++++|+|.++|.++..
T Consensus 322 AkRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~ 400 (1172)
T KOG0926|consen 322 AKRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVP 400 (1172)
T ss_pred HHHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cC----------CCceEEEeccCCChHHHhh---hhc-CCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCC
Q 003721 431 RR----------PDLRLIVTSATLDAERFSG---YFF-NCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEP 496 (800)
Q Consensus 431 ~~----------~~~kiI~lSATl~~~~~~~---~f~-~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~ 496 (800)
.| ..+++|+||||+-..+|.. .|. -.|++.++.|.|||.++|......+|+..+....+.||...+
T Consensus 401 LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP 480 (1172)
T KOG0926|consen 401 LRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLP 480 (1172)
T ss_pred HHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCC
Confidence 54 2689999999998888874 343 367899999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHh---------------------------------------------------h-
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKA---------------------------------------------------L- 524 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~---------------------------------------------------~- 524 (800)
+|.||||++++.+++.+|+.|+++++. .
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 999999999999999999999887320 0
Q ss_pred -------------------C-------------------CCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccch
Q 003721 525 -------------------G-------------------KDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIA 566 (800)
Q Consensus 525 -------------------~-------------------~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~ia 566 (800)
| ....++.|+|+|+-|+.+.|.+||+..+.|.+-||||||+|
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 0 01235779999999999999999999999999999999999
Q ss_pred hhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhc
Q 003721 567 EASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQR 646 (800)
Q Consensus 567 e~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r 646 (800)
|+++|||+|+||||+|..|.+.||..+|+.++.+.|+|++++-||+|||||+|+|+|||||+...|.+.+..++.|||++
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk 720 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILK 720 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCH
Q 003721 647 INLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCS 726 (800)
Q Consensus 647 ~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~~i~~al~~L~~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~ 726 (800)
.+.++++|++|+|+|.++.+|+|..||....+..|...|..+||||.+|.||+||+.||.|||.|+.+|||+.+.+.+|+
T Consensus 721 ~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~l 800 (1172)
T KOG0926|consen 721 KPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLL 800 (1172)
T ss_pred CcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCcC--------------chhH------------------HHHHHHHHhhcCCCCCCHHHHHHHHH
Q 003721 727 DEILTIIAMIQTGHIFTR--------------PRER------------------QAKADEKRARFFQPEGDHLTLLAVYE 774 (800)
Q Consensus 727 ~~~l~i~a~ls~~~~f~~--------------p~~~------------------~~~~~~~~~~f~~~~~D~~~~l~~~~ 774 (800)
.-++.++++||+..+|.. |-++ +....+++.+|....||.|+||.+-.
T Consensus 801 py~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~ 880 (1172)
T KOG0926|consen 801 PYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVS 880 (1172)
T ss_pred hHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 999999999999887652 1110 11223445667778899999999999
Q ss_pred HHHHcCCChhHHHhhcCChhhhhhc
Q 003721 775 AWKAKNFSLPWCGENFVNSRSLKKT 799 (800)
Q Consensus 775 ~~~~~~~~~~wc~~~~~~~~~~~~a 799 (800)
++....+...||..|||+.++|..+
T Consensus 881 a~ey~~~~~rfc~~ngLr~Kam~Ev 905 (1172)
T KOG0926|consen 881 AAEYAENGMRFCEANGLRLKAMEEV 905 (1172)
T ss_pred HHHhhhhcchhHHhcchHHHHHHHH
Confidence 9998888888999999999999765
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.8e-90 Score=802.52 Aligned_cols=519 Identities=41% Similarity=0.662 Sum_probs=474.9
Q ss_pred ChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC--eEEEecchHHHHHHHHHHHH
Q 003721 278 SKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG--KIGCTQPRRVAATSVAKRVA 355 (800)
Q Consensus 278 ~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~--~il~~~P~r~la~qva~rv~ 355 (800)
....+...|.+||+|.+++++++++.++++++|+|+||||||||+||++++.....++ +|+|+||||..|.++|+||+
T Consensus 161 ~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa 240 (924)
T KOG0920|consen 161 SYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVA 240 (924)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHH
Confidence 4467889999999999999999999999999999999999999999999998655444 89999999999999999999
Q ss_pred HHhCCcccceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCc
Q 003721 356 EEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDL 435 (800)
Q Consensus 356 ~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ 435 (800)
.+.+...|..|||+++.+...+..+.+.|||+|.|++.+..++.+..+++||+||+|||++++|+++.+++.++..+|++
T Consensus 241 ~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 241 KERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred HHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCChHHHhhhhcCCCcccCCCCccceeEEeccccc----------hhh---------------------HHHH
Q 003721 436 RLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEV----------TDY---------------------LDSA 484 (800)
Q Consensus 436 kiI~lSATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~----------~~~---------------------~~~~ 484 (800)
|+|+||||++++.|+.||++||+++++|++|||..+|..+.. ..+ .+..
T Consensus 321 kvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 321 KVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred eEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 999999999999999999999999999999999888764310 001 1122
Q ss_pred HHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEecc
Q 003721 485 LITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATN 564 (800)
Q Consensus 485 l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~ 564 (800)
...+..++.....|.||||+||..++..+++.|...... .+...+.+.++||.|+.++|+.||...+.|.+|||+|||
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f--~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF--ADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc--ccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 233445566667899999999999999999988653211 111358899999999999999999999999999999999
Q ss_pred chhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcch
Q 003721 565 IAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEI 644 (800)
Q Consensus 565 iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei 644 (800)
|||++||||+|.||||+|..|.+.|||..++..|...|+|++++.||.|||||..+|.||+||+...|...+..+++|||
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEi 558 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEI 558 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877777999999
Q ss_pred hccCchhHHHHHHHcCCCCcccc--cCCCCCChHHHHHHHHHHHHcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhh
Q 003721 645 QRINLVHTTLTMKAMGINNLLSF--DFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVD 722 (800)
Q Consensus 645 ~r~~L~~~~L~lk~~~i~~~~~f--~~~~~p~~~~i~~al~~L~~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~ 722 (800)
+|.+|.+++|.+|.+++.+...| ..++||+.+++..|+..|..+||||.+.+||+||+.++.+|+||.+|||++.|..
T Consensus 559 lR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~i 638 (924)
T KOG0920|consen 559 LRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAI 638 (924)
T ss_pred HhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhh
Confidence 99999999999999888776544 5799999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHccCCCCCcCchhHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHcCCC-----hhHHHhhcCChhhh
Q 003721 723 LGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQ-PEGDHLTLLAVYEAWKAKNFS-----LPWCGENFVNSRSL 796 (800)
Q Consensus 723 ~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~-~~~D~~~~l~~~~~~~~~~~~-----~~wc~~~~~~~~~~ 796 (800)
|+|++++++|+|+|+.++||..|.++++.+++++..|.. ..||||+++++|+.|.....+ ..||++|||+..+|
T Consensus 639 f~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l 718 (924)
T KOG0920|consen 639 FGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTL 718 (924)
T ss_pred ccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHH
Confidence 999999999999999999999999999999999888874 469999999999999876443 58999999999999
Q ss_pred hh
Q 003721 797 KK 798 (800)
Q Consensus 797 ~~ 798 (800)
++
T Consensus 719 ~~ 720 (924)
T KOG0920|consen 719 QE 720 (924)
T ss_pred HH
Confidence 85
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.1e-81 Score=743.84 Aligned_cols=447 Identities=36% Similarity=0.559 Sum_probs=415.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeee
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGY 368 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~ 368 (800)
|||+.+..++++++.+++++|++|+|||||||++++++++... .+++|+|++|||++|.|++++++++++..+|..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 7999999999999999999999999999999999999998753 457999999999999999999999999999999999
Q ss_pred eeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCCceEEEeccCCChH
Q 003721 369 AIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLDAE 447 (800)
Q Consensus 369 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI~lSATl~~~ 447 (800)
.++++...+..++|.|+|+|+|++++..++.++++++|||||+|||++++|+.+++++.+.. .++++|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999988889999999999999999989999999999999999999999999888887765 47899999999999999
Q ss_pred HHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 003721 448 RFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKD 527 (800)
Q Consensus 448 ~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~ 527 (800)
.+..||.+++++.++|+.+|++++|......+++...+...+..+.....|++|||||++.+++.+++.|.+.+.
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD----- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-----
Confidence 999999999999999999999999987665555544443333333344578999999999999999999976431
Q ss_pred CCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHh
Q 003721 528 VPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQAS 607 (800)
Q Consensus 528 ~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~ 607 (800)
+++.+.++||+|++++|.++++.|++|.++||||||++|+|||||+|++|||+|+.+.+.||+..|++.|.+.|+|+++
T Consensus 235 -~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 235 -SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred -CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 003721 608 ALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYS 687 (800)
Q Consensus 608 ~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~~i~~al~~L~~ 687 (800)
|.||+|||||.++|.||+||+++++. .|.+++.|||++.+|.+++|+++++|+.++..|+|+|||+..++..|++.|+.
T Consensus 314 a~QR~GRAGR~~~G~cyrL~t~~~~~-~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~ 392 (819)
T TIGR01970 314 ATQRAGRAGRLEPGVCYRLWSEEQHQ-RLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQR 392 (819)
T ss_pred HHhhhhhcCCCCCCEEEEeCCHHHHH-hhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999886 59999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCc
Q 003721 688 LGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFT 743 (800)
Q Consensus 688 lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~ 743 (800)
+||||++|+||++|+.|++||++|.+|+||+.|..++|.+++++|+|+||+++++.
T Consensus 393 lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~ 448 (819)
T TIGR01970 393 LGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPR 448 (819)
T ss_pred CCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999998753
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-78 Score=720.74 Aligned_cols=444 Identities=37% Similarity=0.579 Sum_probs=409.9
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceee
Q 003721 288 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG 367 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg 367 (800)
.|||+.+..++++++.++++++++|||||||||++++++++.... +++|+|++|||++|.|++++++++++..+|..||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 499999999999999999999999999999999999999987543 4699999999999999999999999999999999
Q ss_pred eeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCCceEEEeccCCCh
Q 003721 368 YAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLDA 446 (800)
Q Consensus 368 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI~lSATl~~ 446 (800)
|.++++...+..++|+|+|+|+|++.+..++.++++++|||||+|||++++|+++++++.+.. .++++|+|+||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 999999988889999999999999999989999999999999999999999998888877765 4789999999999999
Q ss_pred HHHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 003721 447 ERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGK 526 (800)
Q Consensus 447 ~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~ 526 (800)
+.+..+|.+++++.++|+.+|++.+|...+..+++...+..++..+.....|++|||||++.+++.+++.|.+.+.
T Consensus 162 ~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~---- 237 (812)
T PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA---- 237 (812)
T ss_pred HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc----
Confidence 9999999999999999999999999987776666665544444444445579999999999999999999986421
Q ss_pred CCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHH
Q 003721 527 DVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA 606 (800)
Q Consensus 527 ~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~ 606 (800)
.++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.+...||+..|++.|...|+|++
T Consensus 238 --~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 315 (812)
T PRK11664 238 --SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQA 315 (812)
T ss_pred --CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechh
Confidence 267899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 003721 607 SALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLY 686 (800)
Q Consensus 607 ~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f~~~~~p~~~~i~~al~~L~ 686 (800)
+|.||+|||||.++|.||+||++.++. .+.+++.|||++.+|++++|.++++|+.++..|+|+|||+..++..|++.|+
T Consensus 316 sa~QR~GRaGR~~~G~cyrL~t~~~~~-~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~ 394 (812)
T PRK11664 316 SMTQRAGRAGRLEPGICLHLYSKEQAE-RAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQ 394 (812)
T ss_pred hhhhhccccCCCCCcEEEEecCHHHHh-hCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999996 4999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHH--HHHHHHHHccCC
Q 003721 687 SLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSD--EILTIIAMIQTG 739 (800)
Q Consensus 687 ~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~--~~l~i~a~ls~~ 739 (800)
.+||||++|+||++|+.|++||++|.+|+||+.|..++|.. .+..|+|+|+.+
T Consensus 395 ~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 395 QLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred HCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999753 566777777765
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.4e-55 Score=513.08 Aligned_cols=396 Identities=20% Similarity=0.269 Sum_probs=310.7
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHh-----hcc---------CCCeEEEecchHHHHHHHHHHHHHHh
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEA-----GYT---------TKGKIGCTQPRRVAATSVAKRVAEEF 358 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~-----~~~---------~~~~il~~~P~r~la~qva~rv~~~~ 358 (800)
.+|+++++.+.+++++|++|+||||||+|+||++++. ++. .+++++|++|||+||.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999874 111 24589999999999999999998877
Q ss_pred CCcccceeeeeeecccccC-------CCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc
Q 003721 359 GCRLGEEVGYAIRFEDCTG-------PDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR 431 (800)
Q Consensus 359 g~~~g~~vg~~~~~~~~~~-------~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~ 431 (800)
|......+...+++..... ....|+++|++.. .+.+.++++|||||||||+..+|+++++++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 6532111222334433321 2346888887642 24688999999999999999999999998876543
Q ss_pred CCCceEEEeccCCC--hHHHhhhhcCCCcccCCCCc-cceeEEeccccc-----hhhHHHHHHHHHHHhh---cCCCCCE
Q 003721 432 RPDLRLIVTSATLD--AERFSGYFFNCNIFSIPGRT-FPVDINYSRQEV-----TDYLDSALITVLQIHV---DEPEGDI 500 (800)
Q Consensus 432 ~~~~kiI~lSATl~--~~~~~~~f~~~~~~~i~g~~-~~v~~~~~~~~~-----~~~~~~~l~~v~~i~~---~~~~g~i 500 (800)
. .|+++||||++ .+.+..+|.+++.+.++|++ +|++..|..... .++.......+...+. ...++++
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 2 38999999996 45788888888889999986 999998875432 1233322222333322 1235789
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcC-CCCCceEEEeccchhhcCCCCCeeEEE
Q 003721 501 LLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPA-PPGGRKVVVATNIAEASLTIDGIFYVI 579 (800)
Q Consensus 501 LVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f-~~g~~kVLVAT~iae~GIdip~v~~VI 579 (800)
|||||++++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++||||||+||+|||||+|++||
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 999999999999999987652 3588999999999863 344444 689999999999999999999999999
Q ss_pred eCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHc
Q 003721 580 DPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAM 659 (800)
Q Consensus 580 d~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~ 659 (800)
|+|+++.+. +..++ ..|+|.++|.||+|||||.++|.||+||+++++. +++++...+|.+++|+++++
T Consensus 470 D~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~ri~~~~L~~~vL~lk~~ 537 (675)
T PHA02653 470 DTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIKRIDSEFLHNYILYAKYF 537 (675)
T ss_pred ECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHHHHhHHHHHHHHHHHHHc
Confidence 999877553 44444 3499999999999999999999999999998741 13333334489999999999
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHHcCCcccCCccchh--hhhhhcCCCChHHHHHHHHHhhcC
Q 003721 660 GINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKL--GKKMAEFPLDPPLSKMLLASVDLG 724 (800)
Q Consensus 660 ~i~~~~~f~~~~~p~~~~i~~al~~L~~lgald~~g~lT~l--G~~~~~~pl~p~~~k~l~~~~~~~ 724 (800)
|+... .+.|+|||+.+++..|++.|..+||+|+ +||.+ |+.|+.+ +.||+++.|....
T Consensus 538 g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~~ 597 (675)
T PHA02653 538 NLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGILA 597 (675)
T ss_pred CCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHhH
Confidence 99544 5569999999999999999999998866 79999 9999998 9999999886543
No 13
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.1e-49 Score=420.48 Aligned_cols=419 Identities=20% Similarity=0.201 Sum_probs=316.8
Q ss_pred ccc-eeeeccCCccccccCCCCchHHHHHHhhHHHHHHHHHHHHHHHHhhhcCCcccCCCCC-CCCCchhhhHHHHHHhh
Q 003721 175 QGQ-TRVSVDLSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWE-DPMPETGERHLAQELRG 252 (800)
Q Consensus 175 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 252 (800)
+|+ .+++.+...++..++..|+|- ...+..-.+++.+...++......+ ....++||. .++.+|++++|+..+++
T Consensus 154 fgrG~~ag~d~~~qkk~~s~~~~~~--e~r~t~~~ke~~~~~~qk~~k~~~k-~~~DdrhW~~k~l~Em~~rdwri~red 230 (673)
T KOG0333|consen 154 FGRGFVAGIDVKEQKKEKSKYGEMM--EKRRTEDEKEQEEELLQKVCKKEAK-SGWDDRHWSEKVLAEMTERDWRIFRED 230 (673)
T ss_pred hccccccccchHHHHhhhhhhhhHh--hhhcchhhhhhHHHHHHHhhhhhhh-ccccccchhhhhHHhcCCccceeeecc
Confidence 677 788999999999988899882 3333322333222222221111111 122278998 67889999999999998
Q ss_pred cC--CCCCCcchHHHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhh
Q 003721 253 VG--LSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAG 330 (800)
Q Consensus 253 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~ 330 (800)
+. ..+..+|.+.++|.+.+++.. .+++...-...-..++|.++++..++++++|.+++||||||.+++.+|+-.+
T Consensus 231 ynis~kg~~lpnplrnwEE~~~P~e---~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~I 307 (673)
T KOG0333|consen 231 YNISIKGGRLPNPLRNWEESGFPLE---LLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWI 307 (673)
T ss_pred eeeeecCCCCCccccChhhcCCCHH---HHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHH
Confidence 76 678999999999987665432 2222222222233466999999999999999999999999999888887543
Q ss_pred c-----------cCCCeEEEecchHHHHHHHHHH---HHHHhCCcccceeeeeeeccc--ccCCCceEEEechHHHHHHH
Q 003721 331 Y-----------TTKGKIGCTQPRRVAATSVAKR---VAEEFGCRLGEEVGYAIRFED--CTGPDTVIKYMTDGMLLREI 394 (800)
Q Consensus 331 ~-----------~~~~~il~~~P~r~la~qva~r---v~~~~g~~~g~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l 394 (800)
- ..++..++++|||+||.|+... +.+.+|+.+...||.....+. ..+..+.|+++|||.|++.+
T Consensus 308 sslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 308 SSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred HcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH
Confidence 2 2356899999999999998865 333445555555565444343 45678999999999999998
Q ss_pred hcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-----C--------------------CceEEEeccCCCh--
Q 003721 395 LIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-----P--------------------DLRLIVTSATLDA-- 446 (800)
Q Consensus 395 ~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-----~--------------------~~kiI~lSATl~~-- 446 (800)
.+.. .++++.+||+|||+ |+++++|-..+.+.+.... | -.+.+++|||+++
T Consensus 388 enr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~v 466 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAV 466 (673)
T ss_pred HHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHH
Confidence 6554 48999999999999 8999999888877776542 1 1689999999985
Q ss_pred HHHhhhhcCCCcccCC---CCccc-eeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHH
Q 003721 447 ERFSGYFFNCNIFSIP---GRTFP-VDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIK 522 (800)
Q Consensus 447 ~~~~~~f~~~~~~~i~---g~~~~-v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~ 522 (800)
+.++..++..|++... |++.| ++..+.-.. .+.....+..+..+....+||||+|+++.|+.+|+.|.+.
T Consensus 467 erlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~----ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~-- 540 (673)
T KOG0333|consen 467 ERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVS----EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA-- 540 (673)
T ss_pred HHHHHHHhhCCeEEEeccCCCCccchheEEEEec----chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc--
Confidence 5777766666654333 23322 221111111 1233555666666666788999999999999999999876
Q ss_pred hhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccc
Q 003721 523 ALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITP 602 (800)
Q Consensus 523 ~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p 602 (800)
++.+..+||+-++++|+.+++.|++|...|+||||+|++|||||+|.+||||++ +
T Consensus 541 -------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm------------------a 595 (673)
T KOG0333|consen 541 -------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM------------------A 595 (673)
T ss_pred -------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch------------------h
Confidence 899999999999999999999999999999999999999999999999999999 9
Q ss_pred cCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 603 ISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 603 ~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
.|..+|.||+||+||+| .|.++.|+|+.+
T Consensus 596 ksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 596 KSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred hhHHHHHHHhccccccccCceeEEEeccch
Confidence 99999999999999999 899999999877
No 14
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.1e-48 Score=437.48 Aligned_cols=512 Identities=31% Similarity=0.507 Sum_probs=430.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC----eEEEecchHHHHHHHHHHHHH
Q 003721 281 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG----KIGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 281 ~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~----~il~~~P~r~la~qva~rv~~ 356 (800)
.+..+|..||+..+...+++++.+++.++|.+.||+|||+++.++|++.....+. .+.+.+|||..+..++++|++
T Consensus 369 ~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~ 448 (1282)
T KOG0921|consen 369 KITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVAN 448 (1282)
T ss_pred hhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999998665533 577899999999999999999
Q ss_pred HhCCcccceeeeeeecccccC-CCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCc
Q 003721 357 EFGCRLGEEVGYAIRFEDCTG-PDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDL 435 (800)
Q Consensus 357 ~~g~~~g~~vg~~~~~~~~~~-~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ 435 (800)
+.+..+|..+||.+|++..++ +...|.+||.|.+++.+.+ .+..++++|+||.|+|..++||++-+++.+....+++
T Consensus 449 er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 449 ERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDL 526 (1282)
T ss_pred hhHHhhcccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccchhh
Confidence 999999999999999998775 5678999999999998753 4778999999999999999999999999999999999
Q ss_pred eEEEeccCCChHHHhhhhcCCCcccCCCCccceeEEecccc-------------------------chh-----------
Q 003721 436 RLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQE-------------------------VTD----------- 479 (800)
Q Consensus 436 kiI~lSATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~-------------------------~~~----------- 479 (800)
++++||||++.+.|..+|..+|...+.|+++|+..+|.... ..+
T Consensus 527 ~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 527 RVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 99999999999999999999999999999999876554210 000
Q ss_pred --h----------------HHHHHHHH-HHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCC
Q 003721 480 --Y----------------LDSALITV-LQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSAL 540 (800)
Q Consensus 480 --~----------------~~~~l~~v-~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l 540 (800)
+ ....++.+ ..+....-.|.|+||+++...+-.++..|...- ...+...+.+++.|+.+
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~ilp~Hsq~ 684 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEILPLHSQL 684 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh--hhccchhcccccchhhc
Confidence 0 00011111 122223346889999999999999999887652 22344467899999999
Q ss_pred CHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCC
Q 003721 541 PSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGP 620 (800)
Q Consensus 541 ~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~ 620 (800)
+..++.+|++..+.|..++|++|++++++++|.++.+|||.+..+.+.|-....+....+.|.|.-+..||.||+||..+
T Consensus 685 ~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 685 TSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred ccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccChHHhhhhCCCCCCcchhccCchhHHHHHHHcCCCCcccc--cCCCCCChHHHHHHHHHHHHcCCcccCCccc
Q 003721 621 GKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMGINNLLSF--DFVDPPSPQALISAMEQLYSLGALDEEGLLT 698 (800)
Q Consensus 621 G~~~~L~t~~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~i~~~~~f--~~~~~p~~~~i~~al~~L~~lgald~~g~lT 698 (800)
|.|+++++...|. .+..+..||+.|..+..+.|.+|.+....+-.| .-+.||+.+++..+-..|..++++|.++.+|
T Consensus 765 G~~f~lcs~arF~-~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt 843 (1282)
T KOG0921|consen 765 GFCFHLCSRARFE-ALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELT 843 (1282)
T ss_pred cccccccHHHHHH-HHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCccc
Confidence 9999999999886 478888999999999988888776543333222 4689999999999999999999999999999
Q ss_pred hhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCcCchhHHHHHHHHHhhcCC------CCCCHHHHHHH
Q 003721 699 KLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQ------PEGDHLTLLAV 772 (800)
Q Consensus 699 ~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~------~~~D~~~~l~~ 772 (800)
++|+.++.+|+.|.++||++.+..++|..-|..+++.+|.+..|..-.-.+..-...+.+|.+ --+||.+++.+
T Consensus 844 ~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r 923 (1282)
T KOG0921|consen 844 PLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYR 923 (1282)
T ss_pred chhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhhhhhhhH
Confidence 999999999999999999999999999999999999999877655321111112223344442 24566666667
Q ss_pred HHHHHHcCCChhHHHhhcCChhhhh
Q 003721 773 YEAWKAKNFSLPWCGENFVNSRSLK 797 (800)
Q Consensus 773 ~~~~~~~~~~~~wc~~~~~~~~~~~ 797 (800)
++.|.-..-...+|....+|.+.|.
T Consensus 924 ~~~q~ga~~e~efc~r~~l~~~~~~ 948 (1282)
T KOG0921|consen 924 EAVQMGAAAEREFCERYSLSNPVLK 948 (1282)
T ss_pred HHhhhhhhhhhhHhHhhhhcchhhh
Confidence 7777666566789999988887664
No 15
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.1e-45 Score=433.92 Aligned_cols=486 Identities=19% Similarity=0.198 Sum_probs=322.5
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHH--hCCccccee
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE--FGCRLGEEV 366 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~--~g~~~g~~v 366 (800)
..++++|.++++.+.++++++++||||||||+++.+++++... .++++++++|+++||.|+++++.+. .|..++..+
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 99 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISI 99 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 3468899999999999999999999999999999999988743 4678999999999999999988753 233433333
Q ss_pred eeeeecccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCc---chHHHHHHHHHhcCCCceEEEecc
Q 003721 367 GYAIRFEDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINT---DVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 367 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~---d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
|...... .......|+++||+.+...+...+ .+.++++||+||||.. .+. ..+..++..+...+++.|+|++||
T Consensus 100 G~~~~~~-~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l-~d~~rg~~le~ll~~~~~~~~~~riI~lSA 177 (674)
T PRK01172 100 GDYDDPP-DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII-GDEDRGPTLETVLSSARYVNPDARILALSA 177 (674)
T ss_pred CCCCCCh-hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc-cCCCccHHHHHHHHHHHhcCcCCcEEEEeC
Confidence 3211111 111356899999999877765544 4899999999999953 222 245566666666678899999999
Q ss_pred CCC-hHHHhhhhcCCCcccCCCCccceeEEec--cccchh-h--HHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 443 TLD-AERFSGYFFNCNIFSIPGRTFPVDINYS--RQEVTD-Y--LDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 443 Tl~-~~~~~~~f~~~~~~~i~g~~~~v~~~~~--~~~~~~-~--~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
|++ ...+++| .+++.+....++.|+..... .....+ . ....+..++... ...++++||||+++++++.++..
T Consensus 178 Tl~n~~~la~w-l~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a~~ 255 (674)
T PRK01172 178 TVSNANELAQW-LNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKET-VNDGGQVLVFVSSRKNAEDYAEM 255 (674)
T ss_pred ccCCHHHHHHH-hCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHH-HhCCCcEEEEeccHHHHHHHHHH
Confidence 995 4566664 46666777777777764322 111000 0 000011111111 13478999999999999999999
Q ss_pred HHHHHHhhCCC----------------CCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEe
Q 003721 517 LCEKIKALGKD----------------VPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVID 580 (800)
Q Consensus 517 L~~~l~~~~~~----------------~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId 580 (800)
|.+.+.....- .-...+..|||+|++++|..+++.|++|.++|||||+++++|+|+|+..+||+
T Consensus 256 L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~ 335 (674)
T PRK01172 256 LIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR 335 (674)
T ss_pred HHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc
Confidence 98765322110 00135889999999999999999999999999999999999999999887773
Q ss_pred CCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccCh-H--H-hhhhCCCCCCc--------chh
Q 003721 581 PGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTE-S--A-YRSEMSPTTIP--------EIQ 645 (800)
Q Consensus 581 ~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~-~--~-~~~~~~~~~~p--------ei~ 645 (800)
....|+.. ...|+|..+|.||+|||||.| .|.++.+... . + +...+...+.| +..
T Consensus 336 ----~~~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~ 405 (674)
T PRK01172 336 ----DITRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKV 405 (674)
T ss_pred ----CceEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccH
Confidence 22345432 224899999999999999998 6777766442 2 1 22222233222 122
Q ss_pred ccCchhHHHHHHHcCC----CCcccc---cCC--CCCC---hHHHHHHHHHHHHcCCcccCC--ccchhhhhhhcCCCCh
Q 003721 646 RINLVHTTLTMKAMGI----NNLLSF---DFV--DPPS---PQALISAMEQLYSLGALDEEG--LLTKLGKKMAEFPLDP 711 (800)
Q Consensus 646 r~~L~~~~L~lk~~~i----~~~~~f---~~~--~~p~---~~~i~~al~~L~~lgald~~g--~lT~lG~~~~~~pl~p 711 (800)
+.+ +|...+.|. .|+..| +|+ +.++ .+.+.++++.|...|+|+.++ .+|++|+.++.+|++|
T Consensus 406 ~~~----~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~ 481 (674)
T PRK01172 406 RFN----TLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDP 481 (674)
T ss_pred HHH----HHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCH
Confidence 222 233334432 344333 665 3322 456899999999999998664 5799999999999999
Q ss_pred HHHHHHHHHhhcC-CHHHHHHHHHHccCCCCCcCchhHHHH--HHHH--HhhcCCCCCCHHHHHHHHHHHHHcCCChhHH
Q 003721 712 PLSKMLLASVDLG-CSDEILTIIAMIQTGHIFTRPRERQAK--ADEK--RARFFQPEGDHLTLLAVYEAWKAKNFSLPWC 786 (800)
Q Consensus 712 ~~~k~l~~~~~~~-c~~~~l~i~a~ls~~~~f~~p~~~~~~--~~~~--~~~f~~~~~D~~~~l~~~~~~~~~~~~~~wc 786 (800)
.+++.+..++... ....+|.+++.. ++. .|...++. .... +.........|.-..-+.++|.+...-..-+
T Consensus 482 ~t~~~~~~~l~~~~~~~~~l~~~~~~--~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~ 557 (674)
T PRK01172 482 ESALILKSAFDHDYDEDLALYYISLC--REI--IPANTRDDYYAMEFLEDIGVIDGDISAAKTAMVLRGWISEASMQKIT 557 (674)
T ss_pred HHHHHHHHHhhccCCHHHHHHHhhcC--ccc--cccccchHHHHHHHHHHhccccchhHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999988654 334455555432 222 22211111 1000 1111122223444555678888776655566
Q ss_pred HhhcCChhhhh
Q 003721 787 GENFVNSRSLK 797 (800)
Q Consensus 787 ~~~~~~~~~~~ 797 (800)
....+....++
T Consensus 558 ~~~~~~~g~l~ 568 (674)
T PRK01172 558 DTYGIAPGDVQ 568 (674)
T ss_pred HHhCCChHHHH
Confidence 66666655544
No 16
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.2e-44 Score=429.26 Aligned_cols=491 Identities=18% Similarity=0.185 Sum_probs=330.5
Q ss_pred chHHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHH--hCCcccceee
Q 003721 291 IFKLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE--FGCRLGEEVG 367 (800)
Q Consensus 291 i~~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~--~g~~~g~~vg 367 (800)
++++|.++++. +.+++++++++|||||||+++..++++.. ..+++++|++|+++||.|+++++.+. +|..++..+|
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tG 102 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTG 102 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 67889999998 78999999999999999999999998875 35779999999999999999998753 2555555444
Q ss_pred eeeecccccCCCceEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCCcc---hHHHHHHHHHhcCCCceEEEeccC
Q 003721 368 YAIRFEDCTGPDTVIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTINTD---VLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 368 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
...... .......|+++||+.+...+... .+++++++||+||+|. ..+.+ .+..++.++....++.|+|++|||
T Consensus 103 d~~~~~-~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~rg~~le~il~rl~~~~~~~qii~lSAT 180 (737)
T PRK02362 103 DYDSRD-EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANRGPTLEVTLAKLRRLNPDLQVVALSAT 180 (737)
T ss_pred CcCccc-cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcchHHHHHHHHHHHhcCCCCcEEEEccc
Confidence 221111 11234679999999987766543 4688999999999993 33322 455566777767788999999999
Q ss_pred CCh-HHHhhhhcCCCcccCCCCccceeEEecccc------chh-----hHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 003721 444 LDA-ERFSGYFFNCNIFSIPGRTFPVDINYSRQE------VTD-----YLDSALITVLQIHVDEPEGDILLFLTGQEEID 511 (800)
Q Consensus 444 l~~-~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~------~~~-----~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~ 511 (800)
+++ ..+..| .++..+....++.++........ ... .....+..+..... .++++||||+++++++
T Consensus 181 l~n~~~la~w-l~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~ 257 (737)
T PRK02362 181 IGNADELADW-LDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAE 257 (737)
T ss_pred CCCHHHHHHH-hCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHH
Confidence 975 455544 45555555555555443211000 000 00222333333332 4689999999999999
Q ss_pred HHHHHHHHHHHh----------------hCCC-----------CCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEecc
Q 003721 512 FACESLCEKIKA----------------LGKD-----------VPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATN 564 (800)
Q Consensus 512 ~l~~~L~~~l~~----------------~~~~-----------~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~ 564 (800)
.++..|...... +... .-...+..|||+|++++|..+++.|++|.++|||||+
T Consensus 258 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~ 337 (737)
T PRK02362 258 GFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTP 337 (737)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEech
Confidence 999998765421 0000 0013689999999999999999999999999999999
Q ss_pred chhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHH----hhhhCC
Q 003721 565 IAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESA----YRSEMS 637 (800)
Q Consensus 565 iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~----~~~~~~ 637 (800)
++++|||+|++++||+ ....||+..|+ .|.+..+|.||+|||||.| .|.||.++...+ +...+.
T Consensus 338 tla~GvnlPa~~VVI~----~~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l 408 (737)
T PRK02362 338 TLAAGLNLPARRVIIR----DYRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYI 408 (737)
T ss_pred hhhhhcCCCceEEEEe----cceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHH
Confidence 9999999999999994 35678876543 4899999999999999999 499999987532 222222
Q ss_pred C-CCCcchhc----cCchhHHHHHHHcCC----C---CcccccCCCCCC------hHHHHHHHHHHHHcCCcccCCc---
Q 003721 638 P-TTIPEIQR----INLVHTTLTMKAMGI----N---NLLSFDFVDPPS------PQALISAMEQLYSLGALDEEGL--- 696 (800)
Q Consensus 638 ~-~~~pei~r----~~L~~~~L~lk~~~i----~---~~~~f~~~~~p~------~~~i~~al~~L~~lgald~~g~--- 696 (800)
. .+.|--.. ..|...++...+.|. . +++..+|+..+. .+.+..+++.|...|+|+.++.
T Consensus 409 ~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~ 488 (737)
T PRK02362 409 WADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLE 488 (737)
T ss_pred hCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEe
Confidence 1 22221111 124444555555442 1 234446655543 2358899999999999998764
Q ss_pred cchhhhhhhcCCCChHHHHHHHHHhhcC---CHHHHHHHHHHccC-CCCCcCchhHHHHHHHHH---hhcC--CC----C
Q 003721 697 LTKLGKKMAEFPLDPPLSKMLLASVDLG---CSDEILTIIAMIQT-GHIFTRPRERQAKADEKR---ARFF--QP----E 763 (800)
Q Consensus 697 lT~lG~~~~~~pl~p~~~k~l~~~~~~~---c~~~~l~i~a~ls~-~~~f~~p~~~~~~~~~~~---~~f~--~~----~ 763 (800)
+|++|+.++.++++|..+..+..++... ....+|.++|.-.. .++..|+.+......... ..+. .| .
T Consensus 489 ~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~ 568 (737)
T PRK02362 489 ATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFED 568 (737)
T ss_pred EChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhh
Confidence 8999999999999999999999987643 23456666654322 233344433221111110 0010 11 1
Q ss_pred CCH------HHHHHHHHHHHHcCCChhHHHhhcCChhhh
Q 003721 764 GDH------LTLLAVYEAWKAKNFSLPWCGENFVNSRSL 796 (800)
Q Consensus 764 ~D~------~~~l~~~~~~~~~~~~~~wc~~~~~~~~~~ 796 (800)
.++ +-..-+.+.|.+...-...+.++++....+
T Consensus 569 ~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl 607 (737)
T PRK02362 569 DEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDI 607 (737)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHH
Confidence 122 223445778887766666777776755444
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-43 Score=389.29 Aligned_cols=314 Identities=22% Similarity=0.226 Sum_probs=248.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--------CCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--------KGKIGCTQPRRVAATSVAKRVAEEFGCRL 362 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--------~~~il~~~P~r~la~qva~rv~~~~g~~~ 362 (800)
.+++|.+.++.+++|++++.+|.||||||+++.+|++.+.... +..+++++|||+||.|+.+.+.+ ++..+
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~-~~~~~ 192 (519)
T KOG0331|consen 114 PTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE-FGKSL 192 (519)
T ss_pred CchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH-HcCCC
Confidence 4566999999999999999999999999999999998875541 45899999999999999887644 43333
Q ss_pred c--ce--eee-eee-cccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCC
Q 003721 363 G--EE--VGY-AIR-FEDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPD 434 (800)
Q Consensus 363 g--~~--vg~-~~~-~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~ 434 (800)
+ .. .|. ... .......+..|+++|||+|++.+.... .|++++++|+|||| ||++++|-..+.+.+... +++
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~ 271 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPD 271 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCc
Confidence 2 11 111 111 112233568899999999999996554 69999999999999 999999999988888888 667
Q ss_pred ceEEEeccCCChH--HHhhhhcCCCcccCCCCcc--ceeEEec---cccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 003721 435 LRLIVTSATLDAE--RFSGYFFNCNIFSIPGRTF--PVDINYS---RQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQ 507 (800)
Q Consensus 435 ~kiI~lSATl~~~--~~~~~f~~~~~~~i~g~~~--~v~~~~~---~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~ 507 (800)
.+++++|||++.+ .++.-|++.|+-...+... ....... ...........+..++..+.....+++||||+++
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tk 351 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETK 351 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecch
Confidence 7899999999864 7777777655432222110 0000000 0011112234455555555566789999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccce
Q 003721 508 EEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQN 587 (800)
Q Consensus 508 ~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~ 587 (800)
+.|+.++..|... ++.+..+||+.++.+|..+++.|++|+..||||||+|++|+|||+|++||||++
T Consensus 352 r~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf---- 418 (519)
T KOG0331|consen 352 RTCDELARNLRRK---------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF---- 418 (519)
T ss_pred hhHHHHHHHHHhc---------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCC----
Confidence 9999999999875 688999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 588 VYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 588 ~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|.+.++|+||+||+||.| .|.+|.||+..++.
T Consensus 419 --------------P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 419 --------------PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred --------------CCCHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 999999999999999988 89999999988763
No 18
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-40 Score=399.18 Aligned_cols=489 Identities=17% Similarity=0.127 Sum_probs=313.9
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH--HhCCccccee
Q 003721 290 PIFKLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE--EFGCRLGEEV 366 (800)
Q Consensus 290 Pi~~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~--~~g~~~g~~v 366 (800)
-++++|.++++. +.+++++++++|||||||+++..++++.....+++++|++|+++|+.|+++++.. .+|..++...
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~ 102 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTT 102 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 357889999986 8999999999999999999999999988766778999999999999999998864 2344444444
Q ss_pred eeeeecccccCCCceEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCCcc---hHHHHHHHHHhcCCCceEEEecc
Q 003721 367 GYAIRFEDCTGPDTVIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTINTD---VLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 367 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
|.... .........|+++||+.+...+... .+++++++||+||+|. ..+.+ .+..++.+ ...+.|+|++||
T Consensus 103 Gd~~~-~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~rg~~le~il~~---l~~~~qiI~lSA 177 (720)
T PRK00254 103 GDYDS-TDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDRGATLEMILTH---MLGRAQILGLSA 177 (720)
T ss_pred CCCCC-chhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccchHHHHHHHHh---cCcCCcEEEEEc
Confidence 42111 1111235679999999987766433 4689999999999993 33322 23233332 345789999999
Q ss_pred CCC-hHHHhhhhcCCCcccCCCCccceeE--Eecc-----ccc-hhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHH
Q 003721 443 TLD-AERFSGYFFNCNIFSIPGRTFPVDI--NYSR-----QEV-TDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFA 513 (800)
Q Consensus 443 Tl~-~~~~~~~f~~~~~~~i~g~~~~v~~--~~~~-----~~~-~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l 513 (800)
|++ +..+.. |.+++.+....++.|+.. .+.. ... ..+.......+.+... .++++||||++++.++.+
T Consensus 178 Tl~n~~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~ 254 (720)
T PRK00254 178 TVGNAEELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKE 254 (720)
T ss_pred cCCCHHHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHH
Confidence 996 456665 445555555556555432 1111 100 0111122222222222 367899999999999999
Q ss_pred HHHHHHHHHhhCC----------------CC--------CCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhc
Q 003721 514 CESLCEKIKALGK----------------DV--------PELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEAS 569 (800)
Q Consensus 514 ~~~L~~~l~~~~~----------------~~--------~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~G 569 (800)
+..|...+..... .. -...|.+|||+|++++|..+++.|++|.++|||||+++++|
T Consensus 255 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~G 334 (720)
T PRK00254 255 ALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAG 334 (720)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhh
Confidence 8888654321100 00 02358999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHH---hhhhCCCCCCcc
Q 003721 570 LTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESA---YRSEMSPTTIPE 643 (800)
Q Consensus 570 Idip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~---~~~~~~~~~~pe 643 (800)
||+|++++||. ....|+ ..+ ..+.+..+|.||+|||||.| .|.|+.+.+..+ +...+.. ..||
T Consensus 335 vnipa~~vVI~----~~~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~-~~pe 403 (720)
T PRK00254 335 INLPAFRVIIR----DTKRYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF-GKPE 403 (720)
T ss_pred cCCCceEEEEC----CceEcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh-CCch
Confidence 99999999994 334554 222 23567889999999999987 699999987432 2222211 1111
Q ss_pred hhc------cCchhHHHHHHHcC-CCC------cccccCCC--CCC----hHHHHHHHHHHHHcCCcccC--C--ccchh
Q 003721 644 IQR------INLVHTTLTMKAMG-INN------LLSFDFVD--PPS----PQALISAMEQLYSLGALDEE--G--LLTKL 700 (800)
Q Consensus 644 i~r------~~L~~~~L~lk~~~-i~~------~~~f~~~~--~p~----~~~i~~al~~L~~lgald~~--g--~lT~l 700 (800)
-.. ..|...++...+.+ +.+ ++...|+- .|. .+.+.++++.|.+.|+|+.+ + .+|++
T Consensus 404 ~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~l 483 (720)
T PRK00254 404 KLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPL 483 (720)
T ss_pred hhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChH
Confidence 111 12223333333333 222 33334432 233 24577889999999999754 3 47999
Q ss_pred hhhhhcCCCChHHHHHHHHHhhc----CCHHHHHHHHHHccC-CCCCcCchhHHHHH---HHHHhhcC--CCC---CCH-
Q 003721 701 GKKMAEFPLDPPLSKMLLASVDL----GCSDEILTIIAMIQT-GHIFTRPRERQAKA---DEKRARFF--QPE---GDH- 766 (800)
Q Consensus 701 G~~~~~~pl~p~~~k~l~~~~~~----~c~~~~l~i~a~ls~-~~~f~~p~~~~~~~---~~~~~~f~--~~~---~D~- 766 (800)
|++++.++++|.+++.+..++.- .....++.+++.... .++..|+.+..... .....++. .+. .|+
T Consensus 484 G~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 563 (720)
T PRK00254 484 GIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQ 563 (720)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHH
Confidence 99999999999999999888753 345667777665443 33333443322111 11111221 111 122
Q ss_pred -----HHHHHHHHHHHHcCCChhHHHhhcCChhhhh
Q 003721 767 -----LTLLAVYEAWKAKNFSLPWCGENFVNSRSLK 797 (800)
Q Consensus 767 -----~~~l~~~~~~~~~~~~~~wc~~~~~~~~~~~ 797 (800)
+-..-+.++|.+...-..-+..+.+....++
T Consensus 564 ~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~ 599 (720)
T PRK00254 564 KFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLY 599 (720)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHH
Confidence 2234556778766555556655555554443
No 19
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-42 Score=359.25 Aligned_cols=308 Identities=20% Similarity=0.224 Sum_probs=241.1
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC--eEEEecchHHHHHHHHHHHHHH---hCCccccee
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG--KIGCTQPRRVAATSVAKRVAEE---FGCRLGEEV 366 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~--~il~~~P~r~la~qva~rv~~~---~g~~~g~~v 366 (800)
.++|.++||.++.|+++|..|+||||||.++.+|+++..+.... .++++.|+|+||.|++..+... .|..+...+
T Consensus 85 T~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lv 164 (476)
T KOG0330|consen 85 TKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLV 164 (476)
T ss_pred chhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEe
Confidence 46799999999999999999999999999999999999876544 8999999999999999887432 233333334
Q ss_pred eeeee--cccccCCCceEEEechHHHHHHHhcCC--CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 367 GYAIR--FEDCTGPDTVIKYMTDGMLLREILIDE--NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 367 g~~~~--~~~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
|.... .....+....|+++|||.|.+.+.+.. .+.+++++|+|||+ |.+++||...+-+.+...++..+.+++||
T Consensus 165 GG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~LfsA 243 (476)
T KOG0330|consen 165 GGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLFSA 243 (476)
T ss_pred cCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEEEe
Confidence 42211 111234667899999999999997443 58999999999999 99999998887777777778899999999
Q ss_pred CCChH--HHhhhhcCCCcc-cCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 443 TLDAE--RFSGYFFNCNIF-SIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 443 Tl~~~--~~~~~f~~~~~~-~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
|++.. ++...-...|+- .++... ..+...|...+.. +.+. .++.+.....++.+||||++...++.++-.
T Consensus 244 TMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k-~K~~---yLV~ll~e~~g~s~iVF~~t~~tt~~la~~ 319 (476)
T KOG0330|consen 244 TMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK-DKDT---YLVYLLNELAGNSVIVFCNTCNTTRFLALL 319 (476)
T ss_pred ecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccc-ccch---hHHHHHHhhcCCcEEEEEeccchHHHHHHH
Confidence 99753 444433333331 111111 1122223222221 1112 222333334468899999999999999998
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
|... ++...++||.|+++.|.-.++.|++|.+.||||||++++|+|||.|++||||++
T Consensus 320 L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------------- 377 (476)
T KOG0330|consen 320 LRNL---------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI------------- 377 (476)
T ss_pred HHhc---------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC-------------
Confidence 8876 899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 597 SLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
|.+..+|+||+||+||.| +|+++.|.+.-+
T Consensus 378 -----P~~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 378 -----PTHSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred -----CCcHHHHHHHcccccccCCCcceEEEEehhh
Confidence 999999999999999999 999999999744
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.7e-41 Score=393.48 Aligned_cols=312 Identities=21% Similarity=0.227 Sum_probs=233.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc-------CCCeEEEecchHHHHHHHHHHHHHHhC---C
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT-------TKGKIGCTQPRRVAATSVAKRVAEEFG---C 360 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~-------~~~~il~~~P~r~la~qva~rv~~~~g---~ 360 (800)
.+++|.++++.+++++++|++||||||||+++.++++..... .+..++|++|||+||.|+.+.+.+... .
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 467899999999999999999999999999998888766432 245799999999999999887655321 1
Q ss_pred cccceeeeeeecc--cccCCCceEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceE
Q 003721 361 RLGEEVGYAIRFE--DCTGPDTVIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRL 437 (800)
Q Consensus 361 ~~g~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ki 437 (800)
......|...... ........|+++||++|++.+... ..+.++++||||||| ++++.++...+.+.+...+++.++
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~ 311 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQT 311 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeE
Confidence 1111111110000 111245689999999999988654 358999999999999 788888877777777677889999
Q ss_pred EEeccCCChH--HHhhhhcC-CCcccCCCC-----ccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 003721 438 IVTSATLDAE--RFSGYFFN-CNIFSIPGR-----TFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEE 509 (800)
Q Consensus 438 I~lSATl~~~--~~~~~f~~-~~~~~i~g~-----~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~ 509 (800)
+++|||++.+ .+...+.. .++....+. ...+...+......+ ....+..++..... ..+++||||++++.
T Consensus 312 l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~~-~~~k~LIF~~t~~~ 389 (545)
T PTZ00110 312 LMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE-KRGKLKMLLQRIMR-DGDKILIFVETKKG 389 (545)
T ss_pred EEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh-HHHHHHHHHHHhcc-cCCeEEEEecChHH
Confidence 9999999764 45554443 232111110 011111111111111 11222223322221 46789999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceee
Q 003721 510 IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVY 589 (800)
Q Consensus 510 i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~y 589 (800)
++.++..|... ++.+..+||++++++|..+++.|++|..+|||||+++++|||+|+|++||++++
T Consensus 390 a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~------ 454 (545)
T PTZ00110 390 ADFLTKELRLD---------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF------ 454 (545)
T ss_pred HHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC------
Confidence 99999998754 678899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 590 NPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 590 d~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.+.++|+||+|||||.| .|.||.|+++.+.
T Consensus 455 ------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 455 ------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred ------------CCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 999999999999999999 8999999998764
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.7e-40 Score=380.31 Aligned_cols=310 Identities=18% Similarity=0.207 Sum_probs=240.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchHHHHHHHHHHHHHHh----CCcccc
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRRVAATSVAKRVAEEF----GCRLGE 364 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r~la~qva~rv~~~~----g~~~g~ 364 (800)
++++|.++++.+.++++++++||||||||+++.+++++..... ..++++++|+|+||.|+++.+.... +..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 4578999999999999999999999999999999999875332 3378999999999999998776543 233322
Q ss_pred eeeee-eec-ccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 365 EVGYA-IRF-EDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 365 ~vg~~-~~~-~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
..|.. ... .........|+++|||.+.+.+.... .+.++++||+|||| ++++.++...+...+....++.+++++|
T Consensus 107 ~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~S 185 (460)
T PRK11776 107 LCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLFS 185 (460)
T ss_pred EECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEEE
Confidence 22211 100 01123567899999999999886543 58999999999999 6788877766665555666788999999
Q ss_pred cCCChH--HHhhhhcCCCc-ccCCC--CccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 442 ATLDAE--RFSGYFFNCNI-FSIPG--RTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 442 ATl~~~--~~~~~f~~~~~-~~i~g--~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
||++.. .+...+...|. +.+.. ....+...|...+..+ ....+..+.....++++||||++++.++.+++.
T Consensus 186 AT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~ 261 (460)
T PRK11776 186 ATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADA 261 (460)
T ss_pred ecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHH
Confidence 999753 56666655443 22211 1122333333332222 333444444445577899999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
|... ++.+.++||+|++.+|+.+++.|++|..+|||||+++++|||+|++++||++++
T Consensus 262 L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~------------- 319 (460)
T PRK11776 262 LNAQ---------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL------------- 319 (460)
T ss_pred HHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC-------------
Confidence 9775 788999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 597 SLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.+..+|+||+|||||.| .|.||.|+++.+.
T Consensus 320 -----p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 320 -----ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred -----CCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 999999999999999999 8999999998764
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.7e-41 Score=387.96 Aligned_cols=344 Identities=17% Similarity=0.149 Sum_probs=244.0
Q ss_pred cCCCCCCcchHHHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc
Q 003721 253 VGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT 332 (800)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~ 332 (800)
+.+.+...|.+...+...++.... ...+ ....-.-.+++|.++++.+.++++++++||||||||+++.++++.....
T Consensus 109 i~~~g~~~p~pi~~f~~~~l~~~l--~~~L-~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~ 185 (518)
T PLN00206 109 IHVKGEAVPPPILSFSSCGLPPKL--LLNL-ETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCT 185 (518)
T ss_pred CEecCCCCCchhcCHHhCCCCHHH--HHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHh
Confidence 445667777766665433332211 1111 1122234578899999999999999999999999999999998876431
Q ss_pred ---------CCCeEEEecchHHHHHHHHHHHHHHhCCccc----ceeeeeeecc--cccCCCceEEEechHHHHHHHhcC
Q 003721 333 ---------TKGKIGCTQPRRVAATSVAKRVAEEFGCRLG----EEVGYAIRFE--DCTGPDTVIKYMTDGMLLREILID 397 (800)
Q Consensus 333 ---------~~~~il~~~P~r~la~qva~rv~~~~g~~~g----~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~ 397 (800)
.+.+++|++|||+||.|+.+.+... +...+ ..+|...... .....+..|+++|||+|.+.+...
T Consensus 186 ~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~ 264 (518)
T PLN00206 186 IRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-GKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH 264 (518)
T ss_pred hccccccccCCceEEEEeCCHHHHHHHHHHHHHH-hCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 3458999999999999988776443 22222 1122111000 112345789999999999888654
Q ss_pred -CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChH--HHhhhhcCCCcccCCCCc----cceeE
Q 003721 398 -ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAE--RFSGYFFNCNIFSIPGRT----FPVDI 470 (800)
Q Consensus 398 -~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~--~~~~~f~~~~~~~i~g~~----~~v~~ 470 (800)
..+.++++||||||| ++++.++...+.+ +....++.+++++|||++.+ .+...+...++....+.. ..+..
T Consensus 265 ~~~l~~v~~lViDEad-~ml~~gf~~~i~~-i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q 342 (518)
T PLN00206 265 DIELDNVSVLVLDEVD-CMLERGFRDQVMQ-IFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQ 342 (518)
T ss_pred CccchheeEEEeecHH-HHhhcchHHHHHH-HHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeE
Confidence 458999999999999 6777766554443 33444778999999999764 566666554432221211 11111
Q ss_pred EeccccchhhHHHHHHHHHHHhhc--CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhh
Q 003721 471 NYSRQEVTDYLDSALITVLQIHVD--EPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRI 548 (800)
Q Consensus 471 ~~~~~~~~~~~~~~l~~v~~i~~~--~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i 548 (800)
.+......+ ....+..+... ...+++||||+++..++.++..|... .++.+..+||++++++|..+
T Consensus 343 ~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~i 410 (518)
T PLN00206 343 LAIWVETKQ----KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREV 410 (518)
T ss_pred EEEeccchh----HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHH
Confidence 111111111 11222222221 22468999999999999999888643 16788999999999999999
Q ss_pred cCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEcc
Q 003721 549 FEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLY 627 (800)
Q Consensus 549 ~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~ 627 (800)
++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+|||||.| .|.++.|+
T Consensus 411 l~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~ 472 (518)
T PLN00206 411 MKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFV 472 (518)
T ss_pred HHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEE
Confidence 99999999999999999999999999999999999 999999999999999999 89999999
Q ss_pred ChHHh
Q 003721 628 TESAY 632 (800)
Q Consensus 628 t~~~~ 632 (800)
++++.
T Consensus 473 ~~~~~ 477 (518)
T PLN00206 473 NEEDR 477 (518)
T ss_pred chhHH
Confidence 98764
No 23
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-40 Score=380.11 Aligned_cols=308 Identities=24% Similarity=0.308 Sum_probs=246.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhc--cCCC-e-EEEecchHHHHHHHHHHHHHHh----CCcc
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGY--TTKG-K-IGCTQPRRVAATSVAKRVAEEF----GCRL 362 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~--~~~~-~-il~~~P~r~la~qva~rv~~~~----g~~~ 362 (800)
..++|.++|+.++.++++++.|+||||||.++.+++++... .... . +++++|||+||.|++..+.... +..+
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~ 131 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRV 131 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccE
Confidence 35679999999999999999999999999999999999854 2222 2 8999999999999998765433 2222
Q ss_pred cceeee---eeecccccCCCceEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEE
Q 003721 363 GEEVGY---AIRFEDCTGPDTVIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLI 438 (800)
Q Consensus 363 g~~vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI 438 (800)
...+|. ...... ...+.+|+|+|||+|++++... ..+.++.++|+|||+ |+++++|...+-+.+....++.+++
T Consensus 132 ~~i~GG~~~~~q~~~-l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~~~qtl 209 (513)
T COG0513 132 AVVYGGVSIRKQIEA-LKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPPDRQTL 209 (513)
T ss_pred EEEECCCCHHHHHHH-HhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCcccEEE
Confidence 233331 111111 1235889999999999999766 469999999999999 8999999999888888887899999
Q ss_pred EeccCCChH--HHhhhhcCCCc-ccCC--C---CccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH
Q 003721 439 VTSATLDAE--RFSGYFFNCNI-FSIP--G---RTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEI 510 (800)
Q Consensus 439 ~lSATl~~~--~~~~~f~~~~~-~~i~--g---~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i 510 (800)
++|||++.. .++..+...|. +.+. . ....+...|......+ ..+..+..+......+++||||+++..+
T Consensus 210 lfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~ 286 (513)
T COG0513 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLV 286 (513)
T ss_pred EEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHH
Confidence 999999873 45555555543 2221 1 1122333333332222 4566666666666667899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeec
Q 003721 511 DFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 590 (800)
Q Consensus 511 ~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd 590 (800)
+.++..|... ++.+..+||+|++++|.++++.|++|..+|||||+++++|||||+|.+||||++
T Consensus 287 ~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~------- 350 (513)
T COG0513 287 EELAESLRKR---------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDL------- 350 (513)
T ss_pred HHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccC-------
Confidence 9999998876 799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChH
Q 003721 591 PKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTES 630 (800)
Q Consensus 591 ~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~ 630 (800)
|.+.+.|+||+||+||.| .|.++.|+++.
T Consensus 351 -----------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 351 -----------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred -----------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 999999999999999999 89999999974
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-40 Score=373.57 Aligned_cols=309 Identities=17% Similarity=0.150 Sum_probs=227.5
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc---------CCCeEEEecchHHHHHHHHHHHHHH---hC
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT---------TKGKIGCTQPRRVAATSVAKRVAEE---FG 359 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~---------~~~~il~~~P~r~la~qva~rv~~~---~g 359 (800)
+++|.++++.+.++++++++||||||||+++..++++.... .+.+++|++|+|+||.|+++.+... ++
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 111 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG 111 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCC
Confidence 46799999999999999999999999999999998876532 2357999999999999998765443 34
Q ss_pred Ccccceeeeeeec--ccccCCCceEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC--CC
Q 003721 360 CRLGEEVGYAIRF--EDCTGPDTVIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR--PD 434 (800)
Q Consensus 360 ~~~g~~vg~~~~~--~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~--~~ 434 (800)
..++..+|..... ......+..|+++||+.|++.+... ..+.++++||||||| ++++.++...+...+.... ..
T Consensus 112 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i~~i~~~~~~~~~ 190 (423)
T PRK04837 112 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDIRWLFRRMPPANQ 190 (423)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHHHHHHHhCCCccc
Confidence 4433333311000 0112245689999999999988654 358999999999999 6777666555433332222 24
Q ss_pred ceEEEeccCCChH--HHhhhhcCCCc-ccCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 003721 435 LRLIVTSATLDAE--RFSGYFFNCNI-FSIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQE 508 (800)
Q Consensus 435 ~kiI~lSATl~~~--~~~~~f~~~~~-~~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~ 508 (800)
.+.+++|||++.. .+...+.+.|. +.+.... ..+...+.... .......+..+......+++||||+++.
T Consensus 191 ~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t~~ 266 (423)
T PRK04837 191 RLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANTKH 266 (423)
T ss_pred eeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECCHH
Confidence 5678999999854 33333333332 2111111 11111111111 1223333444444445678999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCcccee
Q 003721 509 EIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNV 588 (800)
Q Consensus 509 ~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~ 588 (800)
.++.++..|... ++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 267 ~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~----- 332 (423)
T PRK04837 267 RCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL----- 332 (423)
T ss_pred HHHHHHHHHHhC---------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC-----
Confidence 999999988764 788999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 589 YNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 589 yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.+.++|+||+|||||.| .|.|+.|+++.+.
T Consensus 333 -------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 333 -------------PDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred -------------CCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 999999999999999999 8999999998754
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.4e-40 Score=373.12 Aligned_cols=310 Identities=19% Similarity=0.209 Sum_probs=233.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--------CCeEEEecchHHHHHHHHHHHHHHhC---
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--------KGKIGCTQPRRVAATSVAKRVAEEFG--- 359 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--------~~~il~~~P~r~la~qva~rv~~~~g--- 359 (800)
++++|.++++.+.++++++++||||||||.++.+++++..... ..+++|++|+|+||.|+.+.+.....
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 4578999999999999999999999999999999998875432 12799999999999999988766542
Q ss_pred Ccccceeeee-eec-ccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCce
Q 003721 360 CRLGEEVGYA-IRF-EDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 360 ~~~g~~vg~~-~~~-~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~k 436 (800)
......+|.. ... .........|+++||++|+..+.... .++++++||||||| ++++.++...+...+....++.+
T Consensus 104 ~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~~q 182 (456)
T PRK10590 104 IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAKRQ 182 (456)
T ss_pred CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhCCccCe
Confidence 2222222211 100 01123457899999999998876544 58999999999999 67777776665555555566788
Q ss_pred EEEeccCCChH--HHhhhhcCCCc-ccCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH
Q 003721 437 LIVTSATLDAE--RFSGYFFNCNI-FSIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEI 510 (800)
Q Consensus 437 iI~lSATl~~~--~~~~~f~~~~~-~~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i 510 (800)
++++|||++.+ .+...+...+. +.+..+. ..+...+..... ......+..+.......++||||+++.++
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~ 258 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK----KRKRELLSQMIGKGNWQQVLVFTRTKHGA 258 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH----HHHHHHHHHHHHcCCCCcEEEEcCcHHHH
Confidence 99999999864 55555544332 2221111 111212211111 11122223333334457899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeec
Q 003721 511 DFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 590 (800)
Q Consensus 511 ~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd 590 (800)
+.+++.|... ++.+..+||++++++|..+++.|++|..+|||||+++++|||+|+|++||++++
T Consensus 259 ~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~------- 322 (456)
T PRK10590 259 NHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYEL------- 322 (456)
T ss_pred HHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCC-------
Confidence 9999988764 678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 591 PKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 591 ~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.+..+|+||+|||||.| .|.|+.|++..+.
T Consensus 323 -----------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 323 -----------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred -----------CCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 999999999999999999 8999999987664
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-39 Score=369.30 Aligned_cols=312 Identities=20% Similarity=0.221 Sum_probs=237.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc------CCCeEEEecchHHHHHHHHHHHHHH---hCCc
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT------TKGKIGCTQPRRVAATSVAKRVAEE---FGCR 361 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~------~~~~il~~~P~r~la~qva~rv~~~---~g~~ 361 (800)
++++|.++++++.++++++++||||||||+++.+++++.... ...+++|++|+++||.|+++.+... .+..
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~ 103 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLD 103 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcE
Confidence 457899999999999999999999999999999988876432 1358999999999999998876543 3444
Q ss_pred ccceeeeee--ecccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEE
Q 003721 362 LGEEVGYAI--RFEDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLI 438 (800)
Q Consensus 362 ~g~~vg~~~--~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI 438 (800)
++..+|... ........+..|+++||++|++.+.... .+.++++||||||| ++++..+...+.......+...+++
T Consensus 104 v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~~~q~~ 182 (434)
T PRK11192 104 IATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRWRKQTL 182 (434)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCccccEEE
Confidence 444443211 1111223467899999999999886654 48899999999999 7777776655554444555677999
Q ss_pred EeccCCChH---HHhhhhcCCCcc-cCCC-Cc--cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 003721 439 VTSATLDAE---RFSGYFFNCNIF-SIPG-RT--FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEID 511 (800)
Q Consensus 439 ~lSATl~~~---~~~~~f~~~~~~-~i~g-~~--~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~ 511 (800)
++|||++.. .+...+...++. .... .. ..+...+... +........+..+......+++||||+++++++
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~---~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~ 259 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRA---DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVH 259 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEe---CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHH
Confidence 999999754 455555444331 1111 00 1111112111 112233444444444445788999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecC
Q 003721 512 FACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNP 591 (800)
Q Consensus 512 ~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~ 591 (800)
.++..|... ++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++++
T Consensus 260 ~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~-------- 322 (434)
T PRK11192 260 ELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDM-------- 322 (434)
T ss_pred HHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECC--------
Confidence 999998764 678999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 592 KQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 592 ~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|.|...|+||+|||||.| .|.++.+++..++.
T Consensus 323 ----------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 323 ----------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred ----------CCCHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 999999999999999999 89999999977663
No 27
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.7e-39 Score=377.49 Aligned_cols=310 Identities=18% Similarity=0.222 Sum_probs=237.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc--CCCeEEEecchHHHHHHHHHHHHHHhC----Cccc
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT--TKGKIGCTQPRRVAATSVAKRVAEEFG----CRLG 363 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~--~~~~il~~~P~r~la~qva~rv~~~~g----~~~g 363 (800)
.++++|.++++.+.+++++|++||||||||+++.+++++.... ...+++|++|+|+||.|++..+....+ ..+.
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~ 107 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 4567899999999999999999999999999999999876533 244899999999999999988766543 2222
Q ss_pred ceeeeeeecc---cccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 364 EEVGYAIRFE---DCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 364 ~~vg~~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
...|.. ..+ ........|+++||+.+++.+.... .++++++||||||| .+++..+...+...+.......++++
T Consensus 108 ~~~gG~-~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd-~ml~~gf~~di~~Il~~lp~~~q~ll 185 (629)
T PRK11634 108 ALYGGQ-RYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD-EMLRMGFIEDVETIMAQIPEGHQTAL 185 (629)
T ss_pred EEECCc-CHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH-HHhhcccHHHHHHHHHhCCCCCeEEE
Confidence 222211 111 1123457899999999999886654 48999999999999 46777777666666666667889999
Q ss_pred eccCCChH--HHhhhhcCCC-cccCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHH
Q 003721 440 TSATLDAE--RFSGYFFNCN-IFSIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFA 513 (800)
Q Consensus 440 lSATl~~~--~~~~~f~~~~-~~~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l 513 (800)
||||++.. .+...|...+ .+.+.... ..+...|...... .....+..+........+||||+++..++.+
T Consensus 186 fSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~----~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM----RKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred EEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh----hHHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 99999753 4444444433 22222211 1122222221111 2223334444444567899999999999999
Q ss_pred HHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCC
Q 003721 514 CESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ 593 (800)
Q Consensus 514 ~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~ 593 (800)
++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 262 ~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~---------- 322 (629)
T PRK11634 262 AEALERN---------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI---------- 322 (629)
T ss_pred HHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC----------
Confidence 9999765 788999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 594 RLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 594 ~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.+.++|+||+|||||.| .|.|+.++++.+.
T Consensus 323 --------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 323 --------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred --------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 999999999999999999 7999999987654
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-39 Score=375.21 Aligned_cols=310 Identities=17% Similarity=0.174 Sum_probs=229.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC---------CCeEEEecchHHHHHHHHHHHHHHh---
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT---------KGKIGCTQPRRVAATSVAKRVAEEF--- 358 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~---------~~~il~~~P~r~la~qva~rv~~~~--- 358 (800)
.+++|.++|+.++++++++++||||||||+++.+++++..... ..+++|++|+|+|+.|+++.+.+..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~ 111 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL 111 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999999999999999999998865321 3589999999999999998865432
Q ss_pred CCcccceeeeeeec--ccccCCCceEEEechHHHHHHHhcC--CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC--
Q 003721 359 GCRLGEEVGYAIRF--EDCTGPDTVIKYMTDGMLLREILID--ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-- 432 (800)
Q Consensus 359 g~~~g~~vg~~~~~--~~~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-- 432 (800)
+..++..+|..... .........|+++||++|++.+... ..+..+++||||||| ++++.++...+...+....
T Consensus 112 ~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~i~~il~~lp~~ 190 (572)
T PRK04537 112 GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKDIRFLLRRMPER 190 (572)
T ss_pred CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHHHHHHHHhcccc
Confidence 22232222211100 0112245679999999999988654 347889999999999 5666666544433332222
Q ss_pred CCceEEEeccCCChH--HHhhhhcCCCc-ccCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 003721 433 PDLRLIVTSATLDAE--RFSGYFFNCNI-FSIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTG 506 (800)
Q Consensus 433 ~~~kiI~lSATl~~~--~~~~~f~~~~~-~~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s 506 (800)
.+.+++++|||++.. .+...+.+.+. +.+.... ..+...+.... ....+..+..+.......++||||++
T Consensus 191 ~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~nt 266 (572)
T PRK04537 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFVNT 266 (572)
T ss_pred cCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEeCC
Confidence 267999999999864 33333333332 1111111 11111111111 12233444444445557789999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccc
Q 003721 507 QEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQ 586 (800)
Q Consensus 507 ~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~ 586 (800)
+..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 267 ~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~--- 334 (572)
T PRK04537 267 KAFVERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL--- 334 (572)
T ss_pred HHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC---
Confidence 99999999998765 678999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 587 NVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 587 ~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.+..+|+||+|||||.| .|.|+.|+++.+.
T Consensus 335 ---------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 335 ---------------PFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred ---------------CCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 999999999999999999 8999999987643
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-39 Score=371.77 Aligned_cols=311 Identities=19% Similarity=0.224 Sum_probs=230.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC---------CCeEEEecchHHHHHHHHHHHHHHh--
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT---------KGKIGCTQPRRVAATSVAKRVAEEF-- 358 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~---------~~~il~~~P~r~la~qva~rv~~~~-- 358 (800)
-.+++|.++++.+.+|+++|+++|||||||+++.+++++..... ..+++|++|+++||.|+++.+....
T Consensus 109 ~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~ 188 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY 188 (475)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 36789999999999999999999999999999999998875443 3589999999999999998876543
Q ss_pred -CCcccceeeeee---ecccccCCCceEEEechHHHHHHHhc-CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc--
Q 003721 359 -GCRLGEEVGYAI---RFEDCTGPDTVIKYMTDGMLLREILI-DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-- 431 (800)
Q Consensus 359 -g~~~g~~vg~~~---~~~~~~~~~~~I~~~T~g~Ll~~l~~-~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-- 431 (800)
+..+...+|... ...........|+++||++|+..... ...++++++||||||| +.++.++...+.+.+...
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~ 267 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQVRQIIRQTPR 267 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHHHHHHHHhCCC
Confidence 333333333110 11112234578999999999887654 3468999999999999 455555543333332222
Q ss_pred CCCceEEEeccCCChH--HHhhhhcCCCcc-cCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcC
Q 003721 432 RPDLRLIVTSATLDAE--RFSGYFFNCNIF-SIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLT 505 (800)
Q Consensus 432 ~~~~kiI~lSATl~~~--~~~~~f~~~~~~-~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~ 505 (800)
..+.+++++|||++.. .+...|...+.. .+.... ..+..++...... .....+..+.......++||||+
T Consensus 268 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~ll~~~~~~~~IVF~~ 343 (475)
T PRK01297 268 KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS----DKYKLLYNLVTQNPWERVMVFAN 343 (475)
T ss_pred CCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch----hHHHHHHHHHHhcCCCeEEEEeC
Confidence 2357899999999753 455555444332 111111 1111111111111 12223333334445678999999
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCcc
Q 003721 506 GQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAK 585 (800)
Q Consensus 506 s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k 585 (800)
++++++.+++.|... ++.+..+||+++.++|.++++.|++|+++|||||+++++|||||++++||++|+
T Consensus 344 s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~-- 412 (475)
T PRK01297 344 RKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL-- 412 (475)
T ss_pred CHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC--
Confidence 999999999888654 677899999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 586 QNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 586 ~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.|.++|+||+|||||.| .|.++.++++++.
T Consensus 413 ----------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 413 ----------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred ----------------CCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 999999999999999999 8999999998754
No 30
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=374.99 Aligned_cols=493 Identities=20% Similarity=0.216 Sum_probs=329.1
Q ss_pred chHHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHH--HHhCCcccceee
Q 003721 291 IFKLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVA--EEFGCRLGEEVG 367 (800)
Q Consensus 291 i~~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~--~~~g~~~g~~vg 367 (800)
+++.|+.++.. +.+++|++|++|||||||..+.+.++......+++++|++|+|+||.+.+++++ +.+|.+++..+|
T Consensus 32 l~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~Tg 111 (766)
T COG1204 32 LFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTG 111 (766)
T ss_pred hhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecC
Confidence 34556677666 556799999999999999999999998876667899999999999999999998 778888887777
Q ss_pred ee-eecccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcc----hHHHHHHHHHhcCCCceEEEec
Q 003721 368 YA-IRFEDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTD----VLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 368 ~~-~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d----~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.. ... ..-..+.|+++|++.+-..+.+.+ ++..+++|||||+| +++.+ ++..++.+.....+.+|++++|
T Consensus 112 D~~~~~--~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH--~l~d~~RG~~lE~iv~r~~~~~~~~rivgLS 187 (766)
T COG1204 112 DYDLDD--ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH--LLGDRTRGPVLESIVARMRRLNELIRIVGLS 187 (766)
T ss_pred Ccccch--hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee--ecCCcccCceehhHHHHHHhhCcceEEEEEe
Confidence 32 222 123568899999998876665444 58899999999999 44444 6788888888888889999999
Q ss_pred cCCChHHHhhhhcCCCcccCCCCcccee--------EEeccccc---h-hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 003721 442 ATLDAERFSGYFFNCNIFSIPGRTFPVD--------INYSRQEV---T-DYLDSALITVLQIHVDEPEGDILLFLTGQEE 509 (800)
Q Consensus 442 ATl~~~~~~~~f~~~~~~~i~g~~~~v~--------~~~~~~~~---~-~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~ 509 (800)
||+++-.-..-|.++..+....++.|.. +....... . ..-...+..+...+. .+|++||||++++.
T Consensus 188 ATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~ 265 (766)
T COG1204 188 ATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA--EGGQVLVFVHSRKE 265 (766)
T ss_pred eecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh--cCCeEEEEEecCch
Confidence 9998754444555555444444433221 11111111 0 111223333333332 37899999999999
Q ss_pred HHHHHHHHHHHHHhhCC------------CC----------------CCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEE
Q 003721 510 IDFACESLCEKIKALGK------------DV----------------PELVVLPVYSALPSEIQSRIFEPAPPGGRKVVV 561 (800)
Q Consensus 510 i~~l~~~L~~~l~~~~~------------~~----------------~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLV 561 (800)
+...+..|...+..... .. -...+..||+||+.++|..+++.|+.|.++|||
T Consensus 266 a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv 345 (766)
T COG1204 266 AEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLV 345 (766)
T ss_pred HHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEE
Confidence 99999999864432110 00 012478899999999999999999999999999
Q ss_pred eccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccC---hHHhhhh
Q 003721 562 ATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYT---ESAYRSE 635 (800)
Q Consensus 562 AT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t---~~~~~~~ 635 (800)
||+++++|+|+|.-++|| .....||+..| ..+++.-++.||+|||||.| -|..+.+.+ +..+..+
T Consensus 346 ~TpTLA~GVNLPA~~VII----k~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~ 416 (766)
T COG1204 346 STPTLAAGVNLPARTVII----KDTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAE 416 (766)
T ss_pred echHHhhhcCCcceEEEE----eeeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHH
Confidence 999999999999999999 77789998544 34899999999999999999 466665552 3333334
Q ss_pred CCCCCCcchhccCch------hHHHHHHHc-------CCCCcccccCCCCC------ChHHHHHHHHHHHHcC-CcccCC
Q 003721 636 MSPTTIPEIQRINLV------HTTLTMKAM-------GINNLLSFDFVDPP------SPQALISAMEQLYSLG-ALDEEG 695 (800)
Q Consensus 636 ~~~~~~pei~r~~L~------~~~L~lk~~-------~i~~~~~f~~~~~p------~~~~i~~al~~L~~lg-ald~~g 695 (800)
......||...+.|. ..++.+.+. +..++....|..|. ....+..+++.|.+.+ .++...
T Consensus 417 ~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~ 496 (766)
T COG1204 417 LYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADW 496 (766)
T ss_pred HhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccc
Confidence 444455554211111 111111111 11111111222222 2346788999999986 665543
Q ss_pred ---ccchhhhhhhcCCCChHHHHHHHHHhhcCCH-HHHHHHHHHccC-CCCCcCchhHHHHHHHHHhhcCCC--------
Q 003721 696 ---LLTKLGKKMAEFPLDPPLSKMLLASVDLGCS-DEILTIIAMIQT-GHIFTRPRERQAKADEKRARFFQP-------- 762 (800)
Q Consensus 696 ---~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~-~~~l~i~a~ls~-~~~f~~p~~~~~~~~~~~~~f~~~-------- 762 (800)
..|.+|+.++.++++|.+++.+......--. ...+.+..+++. ++....+...+.........+...
T Consensus 497 ~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (766)
T COG1204 497 EALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELEEQSDYLLGER 576 (766)
T ss_pred cccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHHHhcchHHhhcc
Confidence 5799999999999999999999988764332 134444444444 333333332222222111111110
Q ss_pred ----CCC---HH---HHHHHHHHHHHcCCChhHHHhhcCChhhhhh
Q 003721 763 ----EGD---HL---TLLAVYEAWKAKNFSLPWCGENFVNSRSLKK 798 (800)
Q Consensus 763 ----~~D---~~---~~l~~~~~~~~~~~~~~wc~~~~~~~~~~~~ 798 (800)
... .+ -...+...|.++......|+..++....+..
T Consensus 577 ~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~ 622 (766)
T COG1204 577 LDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLR 622 (766)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHh
Confidence 011 01 1234466788888888888888887776653
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.7e-39 Score=360.44 Aligned_cols=312 Identities=17% Similarity=0.206 Sum_probs=231.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc--CCCeEEEecchHHHHHHHHHHHHHHh---CCcccce
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT--TKGKIGCTQPRRVAATSVAKRVAEEF---GCRLGEE 365 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~--~~~~il~~~P~r~la~qva~rv~~~~---g~~~g~~ 365 (800)
.+++|.++++.+.++++++++||||||||+++.+++++.... .+.++++++|+++|+.|+.+.+.... +..++..
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~ 130 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHAC 130 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 467899999999999999999999999999999888876432 34589999999999999887765433 2222222
Q ss_pred eeeeeecc--cccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 366 VGYAIRFE--DCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 366 vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
+|.....+ ........|+++||+.+.+.+.... .++++++||||||| +..+.++...+...+....++.+++++||
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 209 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD-EMLSRGFKGQIYDVFKKLPPDVQVALFSA 209 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH-HHHhcchHHHHHHHHhhCCCCcEEEEEEe
Confidence 33211111 1122346899999999998886554 58999999999999 44444444444444455567899999999
Q ss_pred CCChH--HHhhhhcCCCc-ccCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 443 TLDAE--RFSGYFFNCNI-FSIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 443 Tl~~~--~~~~~f~~~~~-~~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
|++.. .+...+...+. +.+.... ..+...+.......+. ...+..+.......++||||++++.++.+++.
T Consensus 210 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~ 286 (401)
T PTZ00424 210 TMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTKK 286 (401)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHHH
Confidence 99864 33334433332 1111111 1122222222222222 22333333344467899999999999999998
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
|.+. ++.+..+||+++.++|..+++.|++|+++|||||+++++|||+|++++||++++
T Consensus 287 l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~------------- 344 (401)
T PTZ00424 287 MHER---------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDL------------- 344 (401)
T ss_pred HHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECC-------------
Confidence 8764 678999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 597 SLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|.|..+|+||+|||||.| .|.|+.|+++++..
T Consensus 345 -----p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 345 -----PASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred -----CCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 999999999999999999 89999999987653
No 32
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=342.89 Aligned_cols=479 Identities=19% Similarity=0.204 Sum_probs=338.2
Q ss_pred HHHHHhcCCchHHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHh--
Q 003721 282 IQEQRRSLPIFKLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF-- 358 (800)
Q Consensus 282 ~~~~r~~lPi~~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~-- 358 (800)
+.+.+..--+.|+|.-++++ +++|.+.+|+++|+||||++..++-+...+..+++.++++|..+||+|.+..+.+.+
T Consensus 208 ~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~ 287 (830)
T COG1202 208 MLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSK 287 (830)
T ss_pred HHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhc
Confidence 34444444455669999988 899999999999999999998888777777788999999999999999999998876
Q ss_pred -CCcccceeeee-ee-----cccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcc----hHHHHHHH
Q 003721 359 -GCRLGEEVGYA-IR-----FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTD----VLFGLLKQ 427 (800)
Q Consensus 359 -g~~~g~~vg~~-~~-----~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d----~l~~~lk~ 427 (800)
|..+...||.+ ++ ....++++.+|++.|.+-+--.+.....+.+++.|||||+| +++.+ -+-+++.+
T Consensus 288 LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH--tL~deERG~RLdGLI~R 365 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH--TLEDEERGPRLDGLIGR 365 (830)
T ss_pred ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee--eccchhcccchhhHHHH
Confidence 33333334421 11 11345678999999999776666666789999999999999 55543 47788888
Q ss_pred HHhcCCCceEEEeccCCCh-HHHhhhhcCCCcccCCCCccceeEEeccccch----hhHHHHHHHH-HHHhhcCCCCCEE
Q 003721 428 LVKRRPDLRLIVTSATLDA-ERFSGYFFNCNIFSIPGRTFPVDINYSRQEVT----DYLDSALITV-LQIHVDEPEGDIL 501 (800)
Q Consensus 428 l~~~~~~~kiI~lSATl~~-~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~----~~~~~~l~~v-~~i~~~~~~g~iL 501 (800)
+....|+.|+|.+|||+.+ +.++.++ ++..+...+|+.|++-+..-.... +.+......- .......-.|++|
T Consensus 366 Lr~l~~~AQ~i~LSATVgNp~elA~~l-~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGNPEELAKKL-GAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred HHHhCCCCeEEEEEeecCChHHHHHHh-CCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceE
Confidence 8888999999999999955 5555554 667778888988887654433211 1122211111 1122233479999
Q ss_pred EEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeC
Q 003721 502 LFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDP 581 (800)
Q Consensus 502 VF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~ 581 (800)
||.+|+..|..++..|..+ ++.+.|||+||+..+|..++..|.++.+.++|+|.+++.|+|+|.-.+|+.+
T Consensus 445 VFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs 515 (830)
T COG1202 445 VFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES 515 (830)
T ss_pred EEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH
Confidence 9999999999999999876 8999999999999999999999999999999999999999999987776643
Q ss_pred CCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHHhhh-hCCCC----------CCcchhcc
Q 003721 582 GFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESAYRS-EMSPT----------TIPEIQRI 647 (800)
Q Consensus 582 g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~~~~-~~~~~----------~~pei~r~ 647 (800)
=. +...|.|+.+|.||.|||||.+ .|++|.|..+..-+. .|..+ ..||-...
T Consensus 516 La--------------MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~v 581 (830)
T COG1202 516 LA--------------MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIV 581 (830)
T ss_pred HH--------------cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCccee
Confidence 33 4456999999999999999999 799999987543222 11111 11111111
Q ss_pred ------CchhHHHHHHHcCCC-------CcccccCCCCCChHHHHHHHHHHHHcCCcccCC---ccchhhhhhhcCCCCh
Q 003721 648 ------NLVHTTLTMKAMGIN-------NLLSFDFVDPPSPQALISAMEQLYSLGALDEEG---LLTKLGKKMAEFPLDP 711 (800)
Q Consensus 648 ------~L~~~~L~lk~~~i~-------~~~~f~~~~~p~~~~i~~al~~L~~lgald~~g---~lT~lG~~~~~~pl~p 711 (800)
.+++++- +.++. .+.+..+-. .-....+++.|...|+|+.+| ++|+.|++++..-+.|
T Consensus 582 ey~ee~e~e~vLA---~~~v~~s~~~i~~v~~~~~g~---~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p 655 (830)
T COG1202 582 EYDEEDEEENVLA---SAGVTNSLSVIERVNSLMLGA---AFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGP 655 (830)
T ss_pred ccCcHHHHHHHHH---HhhhcCcHHHHhhcChhhccc---cCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCc
Confidence 1122211 22211 111111100 113567899999999999887 4899999999999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHccCC-CCCcCchhHHHHHHHHHhhcC-----------CCCCCHHH---------HH
Q 003721 712 PLSKMLLASVDLGCSDEILTIIAMIQTG-HIFTRPRERQAKADEKRARFF-----------QPEGDHLT---------LL 770 (800)
Q Consensus 712 ~~~k~l~~~~~~~c~~~~l~i~a~ls~~-~~f~~p~~~~~~~~~~~~~f~-----------~~~~D~~~---------~l 770 (800)
..|-.|..++. -+.+.+-|++.|.-- +.+..+.-+++.....+.++. ..++|-+. ++
T Consensus 656 ~~a~~Ir~~v~--~~~~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~ 733 (830)
T COG1202 656 SEAEFIREGVL--ASMDPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLL 733 (830)
T ss_pred hHHHHHHHhhh--ccCChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHH
Confidence 99999988862 234567788877653 333344444444444443321 13455554 88
Q ss_pred HHHHHHHHcCCCh-hHHHhhcCChh
Q 003721 771 AVYEAWKAKNFSL-PWCGENFVNSR 794 (800)
Q Consensus 771 ~~~~~~~~~~~~~-~wc~~~~~~~~ 794 (800)
++|..|..+.+.. .=|.+..++.+
T Consensus 734 ~i~~df~~c~c~d~ce~~~~~lse~ 758 (830)
T COG1202 734 LIYMDFLNCTCRDCCECAEQRLSEK 758 (830)
T ss_pred HHHHHHhcCchhhhHHHHHHHHHHH
Confidence 9999998765433 33444444433
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4e-38 Score=372.80 Aligned_cols=309 Identities=15% Similarity=0.110 Sum_probs=223.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeee
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGY 368 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~ 368 (800)
-..+++|.++|++++.++++++++|||+|||+++.++++.. ++.++|+.|+++|+.++...+.. .|.......|.
T Consensus 459 ~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~ 533 (1195)
T PLN03137 459 HSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAG 533 (1195)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 45678999999999999999999999999999999988754 57899999999999876665543 34443322221
Q ss_pred eeec------ccc--cCCCceEEEechHHHHH------HHhcCCCCCCCceEEEeccCcCCC-CcchHHHH--HHHHHhc
Q 003721 369 AIRF------EDC--TGPDTVIKYMTDGMLLR------EILIDENLSQYSVIMLDEAHERTI-NTDVLFGL--LKQLVKR 431 (800)
Q Consensus 369 ~~~~------~~~--~~~~~~I~~~T~g~Ll~------~l~~~~~l~~~~~IIiDEaHer~~-~~d~l~~~--lk~l~~~ 431 (800)
.... ... .....+|+|+||++|.. .+..-.....+++|||||||+.+- ..+|...+ +..+...
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~ 613 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK 613 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh
Confidence 1100 011 12567899999998752 221111245689999999996432 23443322 3345566
Q ss_pred CCCceEEEeccCCChH---HHhhhhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhh-cCCCCCEEEEcCCH
Q 003721 432 RPDLRLIVTSATLDAE---RFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV-DEPEGDILLFLTGQ 507 (800)
Q Consensus 432 ~~~~kiI~lSATl~~~---~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~-~~~~g~iLVF~~s~ 507 (800)
.++.+++++|||++.. .+...+...+...+........+.|...+.... .+..+..... ....+..||||+++
T Consensus 614 fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SR 690 (1195)
T PLN03137 614 FPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSR 690 (1195)
T ss_pred CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCch
Confidence 7889999999999864 334443322211111111112233332222211 1122222222 22356789999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccce
Q 003721 508 EEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQN 587 (800)
Q Consensus 508 ~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~ 587 (800)
++++.++..|... ++.+.+|||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++++
T Consensus 691 ke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl---- 757 (1195)
T PLN03137 691 MDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL---- 757 (1195)
T ss_pred hHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC----
Confidence 9999999999765 788999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 588 VYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 588 ~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.|.++|+||+|||||.| +|.|+.||+..++
T Consensus 758 --------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 758 --------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred --------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 999999999999999999 9999999998776
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-37 Score=355.91 Aligned_cols=307 Identities=18% Similarity=0.155 Sum_probs=221.3
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeee
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAI 370 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~ 370 (800)
.+++|.++++++.+++++++++|||||||+++.++++.. ++.+++++|+++|+.++..++. .+|.......|...
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----~~~~lVi~P~~~L~~dq~~~l~-~~gi~~~~l~~~~~ 86 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----DGITLVISPLISLMEDQVLQLK-ASGIPATFLNSSQS 86 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----CCcEEEEecHHHHHHHHHHHHH-HcCCcEEEEeCCCC
Confidence 456899999999999999999999999999988887653 5689999999999999998875 34554332222111
Q ss_pred ec------ccccCCCceEEEechHHHHHHH--hcCC-CCCCCceEEEeccCcCCC-CcchHH--HHHHHHHhcCCCceEE
Q 003721 371 RF------EDCTGPDTVIKYMTDGMLLREI--LIDE-NLSQYSVIMLDEAHERTI-NTDVLF--GLLKQLVKRRPDLRLI 438 (800)
Q Consensus 371 ~~------~~~~~~~~~I~~~T~g~Ll~~l--~~~~-~l~~~~~IIiDEaHer~~-~~d~l~--~~lk~l~~~~~~~kiI 438 (800)
.. .........|+|+||+.+.... .... ...++++|||||||+..- ..++.. ..+..+....|+.+++
T Consensus 87 ~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l 166 (470)
T TIGR00614 87 KEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIM 166 (470)
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceE
Confidence 10 1123455789999999875321 1111 468899999999995332 122322 2334455567899999
Q ss_pred EeccCCChHH---Hhhhhc-CCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhh-cCCCCCEEEEcCCHHHHHHH
Q 003721 439 VTSATLDAER---FSGYFF-NCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV-DEPEGDILLFLTGQEEIDFA 513 (800)
Q Consensus 439 ~lSATl~~~~---~~~~f~-~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~-~~~~g~iLVF~~s~~~i~~l 513 (800)
++|||++... +...+. ..+.+.......| .+.|....... ..+..+..... ...+..+||||+++++++.+
T Consensus 167 ~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~---~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~l 242 (470)
T TIGR00614 167 ALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTP---KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQV 242 (470)
T ss_pred EEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCc---cHHHHHHHHHHHhcCCCceEEEECcHHHHHHH
Confidence 9999998753 333322 1222211111111 11221111111 11222222222 22344569999999999999
Q ss_pred HHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCC
Q 003721 514 CESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ 593 (800)
Q Consensus 514 ~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~ 593 (800)
+..|... ++.+.++||+|++++|..+++.|.+|..+|||||+++++|||+|+|++||++++
T Consensus 243 a~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~---------- 303 (470)
T TIGR00614 243 TASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL---------- 303 (470)
T ss_pred HHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC----------
Confidence 9999765 788999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 594 RLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 594 ~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|.|.++|+||+|||||.| +|.|+.+|++.+..
T Consensus 304 --------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 304 --------PKSMESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred --------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 999999999999999999 89999999987753
No 35
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=341.70 Aligned_cols=316 Identities=21% Similarity=0.241 Sum_probs=242.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC-----eEEEecchHHHHHHHH---HHH
Q 003721 283 QEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG-----KIGCTQPRRVAATSVA---KRV 354 (800)
Q Consensus 283 ~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~-----~il~~~P~r~la~qva---~rv 354 (800)
..+..+.|| |..+||..+-+++++.+|.||||||.+|.+|+++..+-... +|++++|||+||.|++ +.+
T Consensus 199 lGy~~PTpI---Q~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~ql 275 (691)
T KOG0338|consen 199 LGYKKPTPI---QVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQL 275 (691)
T ss_pred cCCCCCCch---hhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHH
Confidence 344455555 99999999999999999999999999999999998654422 8999999999999876 456
Q ss_pred HHHhCCcccceeee-eeec-ccccCCCceEEEechHHHHHHHhcCC--CCCCCceEEEeccCcCCCCcchHHHHHHHHHh
Q 003721 355 AEEFGCRLGEEVGY-AIRF-EDCTGPDTVIKYMTDGMLLREILIDE--NLSQYSVIMLDEAHERTINTDVLFGLLKQLVK 430 (800)
Q Consensus 355 ~~~~g~~~g~~vg~-~~~~-~~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~ 430 (800)
++.....+|..+|. .++. +........|+++|||+|.+++.+.+ .+.++.++|+|||+ |+++..|...+-..+..
T Consensus 276 aqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~l 354 (691)
T KOG0338|consen 276 AQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRL 354 (691)
T ss_pred HhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHh
Confidence 66666677766662 2222 22335677899999999999998876 48999999999999 99999887776666666
Q ss_pred cCCCceEEEeccCCCh--HHHhhhhcCCCcccC--CCCc--cceeEEecc-ccchhh-HHHHHHHHHHHhhcCCCCCEEE
Q 003721 431 RRPDLRLIVTSATLDA--ERFSGYFFNCNIFSI--PGRT--FPVDINYSR-QEVTDY-LDSALITVLQIHVDEPEGDILL 502 (800)
Q Consensus 431 ~~~~~kiI~lSATl~~--~~~~~~f~~~~~~~i--~g~~--~~v~~~~~~-~~~~~~-~~~~l~~v~~i~~~~~~g~iLV 502 (800)
...+.|.+++||||.. ..+...-++.|+-.. +... ..+...|.. .+..+. .+..+..++. ......++|
T Consensus 355 cpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~---rtf~~~~iv 431 (691)
T KOG0338|consen 355 CPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLIT---RTFQDRTIV 431 (691)
T ss_pred ccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHH---HhcccceEE
Confidence 6678899999999975 466666666554211 1111 111111111 111111 1122222222 122567999
Q ss_pred EcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCC
Q 003721 503 FLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPG 582 (800)
Q Consensus 503 F~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g 582 (800)
|+.+++.+..+.-.|--. ++.+.-+||+|++++|-..++.|+++.+.|||||++|++|+||++|..||||.
T Consensus 432 Fv~tKk~AHRl~IllGLl---------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~ 502 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGLL---------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYA 502 (691)
T ss_pred EEehHHHHHHHHHHHHHh---------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEecc
Confidence 999999998876554322 78899999999999999999999999999999999999999999999999999
Q ss_pred CccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 583 FAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 583 ~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
+ |.+...|+||+||+.|.| .|.++.|..+++-
T Consensus 503 m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 503 M------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred C------------------chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 9 999999999999999999 8999999998754
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.5e-37 Score=367.47 Aligned_cols=318 Identities=18% Similarity=0.170 Sum_probs=227.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHHHHHHHHHHHHHh--CCccccee
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVAATSVAKRVAEEF--GCRLGEEV 366 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~la~qva~rv~~~~--g~~~g~~v 366 (800)
.+|++|.++++.+.+++++++++|||||||.++.+++++..... +.+++|+.|+|+||.|+.+++.+.. +..++...
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~ 115 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYD 115 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 46889999999999999999999999999999999999876543 4589999999999999999986643 22222222
Q ss_pred eeeeecc-cccCCCceEEEechHHHHHHHhcC-----CCCCCCceEEEeccCcCCCCc--chHHHHHHHH---Hhc-CCC
Q 003721 367 GYAIRFE-DCTGPDTVIKYMTDGMLLREILID-----ENLSQYSVIMLDEAHERTINT--DVLFGLLKQL---VKR-RPD 434 (800)
Q Consensus 367 g~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~-----~~l~~~~~IIiDEaHer~~~~--d~l~~~lk~l---~~~-~~~ 434 (800)
|.....+ ........|+++||++|...++.. ..++++++|||||||. +.+. ..+..+++++ ... ..+
T Consensus 116 Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~~~~~il~rL~ri~~~~g~~ 194 (742)
T TIGR03817 116 GDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGSHVALVLRRLRRLCARYGAS 194 (742)
T ss_pred CCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHHHHHHHHHHHHHHHHhcCCC
Confidence 2211111 112345689999999987654322 2378999999999994 3221 1122233333 322 356
Q ss_pred ceEEEeccCCCh-HHHhhhhcCCCcccCCC--Cccc-eeEEeccccc------------hhhHHHHHHHHHHHhhcCCCC
Q 003721 435 LRLIVTSATLDA-ERFSGYFFNCNIFSIPG--RTFP-VDINYSRQEV------------TDYLDSALITVLQIHVDEPEG 498 (800)
Q Consensus 435 ~kiI~lSATl~~-~~~~~~f~~~~~~~i~g--~~~~-v~~~~~~~~~------------~~~~~~~l~~v~~i~~~~~~g 498 (800)
.|+|++|||+++ ..+...+.+.++..+.. .+.. ....+...+. ..........+..+.. .+.
T Consensus 195 ~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~ 272 (742)
T TIGR03817 195 PVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGA 272 (742)
T ss_pred CEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCC
Confidence 899999999964 45565666655433322 1111 1111111110 0011122222333322 257
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEE
Q 003721 499 DILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYV 578 (800)
Q Consensus 499 ~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~V 578 (800)
++||||+|++.++.++..|.+.+...... .+..+..+||++++++|.++++.|++|++++||||+++++|||||++++|
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~-l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~V 351 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPD-LAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAV 351 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccc-cccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEE
Confidence 89999999999999999988765433211 13568899999999999999999999999999999999999999999999
Q ss_pred EeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccCh
Q 003721 579 IDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTE 629 (800)
Q Consensus 579 Id~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~ 629 (800)
|++|+ |.+.++|+||+|||||.| .|.++.+.+.
T Consensus 352 I~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 352 VIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred EEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 99999 999999999999999999 7999998863
No 37
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.4e-38 Score=334.41 Aligned_cols=310 Identities=17% Similarity=0.190 Sum_probs=241.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC------CCeEEEecchHHHHHHHHHHHHHHhCCcccc
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT------KGKIGCTQPRRVAATSVAKRVAEEFGCRLGE 364 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~------~~~il~~~P~r~la~qva~rv~~~~g~~~g~ 364 (800)
..++|+..++.++.++++++.|-||||||.+++++..+..+.. +-.+++++|||+||+|++....+.+....+.
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 4567999999999999999999999999999999999876542 2378999999999999998877666443334
Q ss_pred eeeeeeeccc------ccCCCceEEEechHHHHHHHhcCCC--CCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCce
Q 003721 365 EVGYAIRFED------CTGPDTVIKYMTDGMLLREILIDEN--LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 365 ~vg~~~~~~~------~~~~~~~I~~~T~g~Ll~~l~~~~~--l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~k 436 (800)
.+|+.+.... .....+.|+++|||+|++++.+.+. ..+..++|+|||+ |.++.+|-..+.+.+.....+.|
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~rq 263 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQRQ 263 (543)
T ss_pred ceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhccccce
Confidence 4444433322 2234889999999999999987764 6777899999999 99999999888888877778899
Q ss_pred EEEeccCCChH--HHhhhhcCC-Ccc-cC-CCCc----cceeEEeccccchhhHHHHHHHHHHHhhcCC-CCCEEEEcCC
Q 003721 437 LIVTSATLDAE--RFSGYFFNC-NIF-SI-PGRT----FPVDINYSRQEVTDYLDSALITVLQIHVDEP-EGDILLFLTG 506 (800)
Q Consensus 437 iI~lSATl~~~--~~~~~f~~~-~~~-~i-~g~~----~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~-~g~iLVF~~s 506 (800)
.+++|||.+.+ +++...+.. +++ .. .+.. -.++.-|...+.... +..+........ ..+|+|||+|
T Consensus 264 t~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~sT 339 (543)
T KOG0342|consen 264 TLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFST 339 (543)
T ss_pred eeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch----HHHHHHHHHHhcCCceEEEEech
Confidence 99999999864 444433332 221 11 1111 112222332232222 222333222222 3789999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccc
Q 003721 507 QEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQ 586 (800)
Q Consensus 507 ~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~ 586 (800)
...+...++.|... .+.|..+||++++..|..++..|++.+.-||||||+++||+|+|+|+.||++|.
T Consensus 340 ~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~--- 407 (543)
T KOG0342|consen 340 CMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP--- 407 (543)
T ss_pred hhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCC---
Confidence 99999999998754 788999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 587 NVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 587 ~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|....+|+||+||+||.| .|.++.+..+++.
T Consensus 408 ---------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 408 ---------------PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred ---------------CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 999999999999999999 8999999987654
No 38
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=328.34 Aligned_cols=328 Identities=20% Similarity=0.236 Sum_probs=253.1
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-----CC--eEEEecchHHHHHHHHHHHHH---H-hCC
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-----KG--KIGCTQPRRVAATSVAKRVAE---E-FGC 360 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-----~~--~il~~~P~r~la~qva~rv~~---~-~g~ 360 (800)
.++|..+|+.+..++||++-++||||||.++..|+++..+.. .+ ..+++.|||+||.|+..-+.. . ...
T Consensus 30 TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l 109 (567)
T KOG0345|consen 30 TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNL 109 (567)
T ss_pred CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhcc
Confidence 356999999999999999999999999999999999986432 22 578999999999998765432 2 233
Q ss_pred cccceeeeeeecccc---cCCCceEEEechHHHHHHHhcCC---CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCC
Q 003721 361 RLGEEVGYAIRFEDC---TGPDTVIKYMTDGMLLREILIDE---NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPD 434 (800)
Q Consensus 361 ~~g~~vg~~~~~~~~---~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~ 434 (800)
.....+|...-.++. ...+..|+++|||+|.+.+.... .+.+++++|+|||+ |.++++|...+-..+.....+
T Consensus 110 ~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPKQ 188 (567)
T KOG0345|consen 110 NCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPKQ 188 (567)
T ss_pred ceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhcccc
Confidence 333445532222221 23567799999999999987633 25599999999999 999999988888777777778
Q ss_pred ceEEEeccCCCh--HHHhhhhcCCCcc-cCCCCc---cc--eeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 003721 435 LRLIVTSATLDA--ERFSGYFFNCNIF-SIPGRT---FP--VDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTG 506 (800)
Q Consensus 435 ~kiI~lSATl~~--~~~~~~f~~~~~~-~i~g~~---~~--v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s 506 (800)
.++=++|||... +++....+..|+- .+.... .| +...|..... +..+..++.+..+...+++|||.+|
T Consensus 189 RRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a----~eK~~~lv~~L~~~~~kK~iVFF~T 264 (567)
T KOG0345|consen 189 RRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA----DEKLSQLVHLLNNNKDKKCIVFFPT 264 (567)
T ss_pred cccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH----HHHHHHHHHHHhccccccEEEEecC
Confidence 899999999964 4566655555442 221111 22 4444443322 3455666777777778899999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccc
Q 003721 507 QEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQ 586 (800)
Q Consensus 507 ~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~ 586 (800)
...++.....+...+ ....++.+||.|.+..|.++++.|.+....+++||++|++|||||+|++||+++.
T Consensus 265 CasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~Dp--- 334 (567)
T KOG0345|consen 265 CASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDP--- 334 (567)
T ss_pred cchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCC---
Confidence 999998888876652 3678999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccC--hHHhhhhCCCCCCcchhccCc
Q 003721 587 NVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYT--ESAYRSEMSPTTIPEIQRINL 649 (800)
Q Consensus 587 ~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t--~~~~~~~~~~~~~pei~r~~L 649 (800)
|...++|+||+||+||.| .|.++.|.. +.+|.+-|.....|++.+...
T Consensus 335 ---------------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 335 ---------------PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred ---------------CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 999999999999999999 787766655 556666566666777766543
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.2e-36 Score=357.67 Aligned_cols=305 Identities=18% Similarity=0.233 Sum_probs=224.3
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeee
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAI 370 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~ 370 (800)
.+++|.++++++.+++++++++|||||||+++.++++.. .+.+++++|+++|+.++...+.. .|.......+...
T Consensus 26 ~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~~~ 100 (607)
T PRK11057 26 FRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNSTQT 100 (607)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Confidence 457899999999999999999999999999988877643 56899999999999999888754 4544322211111
Q ss_pred e------cccccCCCceEEEechHHHHHHH-hcCCCCCCCceEEEeccCcCCCC-cchH--HHHHHHHHhcCCCceEEEe
Q 003721 371 R------FEDCTGPDTVIKYMTDGMLLREI-LIDENLSQYSVIMLDEAHERTIN-TDVL--FGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 371 ~------~~~~~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~~~-~d~l--~~~lk~l~~~~~~~kiI~l 440 (800)
. +.........++|+||+.+.... .......++++|||||||+.+-. .++. ...+..+....|+.+++++
T Consensus 101 ~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~l 180 (607)
T PRK11057 101 REQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEE
Confidence 1 11223456789999999887432 22223457999999999964422 2232 2345556666789999999
Q ss_pred ccCCChHHH---hhhh-cCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 441 SATLDAERF---SGYF-FNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 441 SATl~~~~~---~~~f-~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
|||++.... ...+ ...|.+.+.....| .+.|....... .+..+........++++||||+++++++.++..
T Consensus 181 TAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~----~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~ 255 (607)
T PRK11057 181 TATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFK----PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAAR 255 (607)
T ss_pred ecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccc----hHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHH
Confidence 999986532 2222 12232222111111 11221111111 122233333344567899999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
|... ++.+.++||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++++
T Consensus 256 L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~------------- 313 (607)
T PRK11057 256 LQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI------------- 313 (607)
T ss_pred HHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC-------------
Confidence 9775 788999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 597 SLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.|.++|+||+|||||.| +|.|+.||+..++
T Consensus 314 -----P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 314 -----PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred -----CCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 999999999999999999 8999999998875
No 40
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=322.63 Aligned_cols=314 Identities=21% Similarity=0.240 Sum_probs=249.8
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc--------CCCeEEEecchHHHHHHHHHHHHHH
Q 003721 286 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT--------TKGKIGCTQPRRVAATSVAKRVAEE 357 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~--------~~~~il~~~P~r~la~qva~rv~~~ 357 (800)
-++.|| |.++++.++++++++.+|.||+|||++++.+-+-+... .+..++++.|||+||.|+--.+.++
T Consensus 241 qKPtPI---qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 241 QKPTPI---QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCCcc---hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 345555 99999999999999999999999999988766544322 2448999999999999988777654
Q ss_pred h--CCcccceeeeeeecccc--cCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC
Q 003721 358 F--GCRLGEEVGYAIRFEDC--TGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR 432 (800)
Q Consensus 358 ~--g~~~g~~vg~~~~~~~~--~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~ 432 (800)
. |.......|...|.+.. ...+..|+++|||+|.+....+. .+..+.++|+|||+ |+++++|..++.+.++..+
T Consensus 318 syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiR 396 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIR 396 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcC
Confidence 3 22221222333333322 24678899999999998876654 59999999999999 9999999999999999999
Q ss_pred CCceEEEeccCCCh--HHHhhhhcCCCcccCCCCcc-----ceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcC
Q 003721 433 PDLRLIVTSATLDA--ERFSGYFFNCNIFSIPGRTF-----PVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLT 505 (800)
Q Consensus 433 ~~~kiI~lSATl~~--~~~~~~f~~~~~~~i~g~~~-----~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~ 505 (800)
|+.+++++|||++. .+++..+...|++...|... .|...+......+.. ..+..+..-+ .+..++||||.
T Consensus 397 PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~m--s~ndKvIiFv~ 473 (629)
T KOG0336|consen 397 PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVANM--SSNDKVIIFVS 473 (629)
T ss_pred CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHhc--CCCceEEEEEe
Confidence 99999999999985 57888787878777666542 333333322222222 2222222222 34667999999
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCcc
Q 003721 506 GQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAK 585 (800)
Q Consensus 506 s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k 585 (800)
.+..++.+...|+-. ++....+||+-.+.+|+..++.|++|..+|||||+++.+|+|+|+|++|+||+|
T Consensus 474 ~K~~AD~LSSd~~l~---------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF-- 542 (629)
T KOG0336|consen 474 RKVMADHLSSDFCLK---------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF-- 542 (629)
T ss_pred chhhhhhccchhhhc---------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC--
Confidence 999999888877654 788889999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 586 QNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 586 ~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|...+.|+||+||+||+| .|..+.+++..+..
T Consensus 543 ----------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 543 ----------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred ----------------CccHHHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 999999999999999999 89999999988764
No 41
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-37 Score=330.55 Aligned_cols=313 Identities=18% Similarity=0.228 Sum_probs=253.9
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC------CCeEEEecchHHHHHHHHHHHH---HHhC
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT------KGKIGCTQPRRVAATSVAKRVA---EEFG 359 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~------~~~il~~~P~r~la~qva~rv~---~~~g 359 (800)
.-+..+|.+.|+..+.|++|+..|.||||||++++.|+++..+.. |--++++.|||+||.|+...+. +..+
T Consensus 90 v~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred ccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 445678999999999999999999999999999999999986643 3378999999999999886654 4445
Q ss_pred Ccccceeee-eeecccccCCCceEEEechHHHHHHHhcCCC--CCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCce
Q 003721 360 CRLGEEVGY-AIRFEDCTGPDTVIKYMTDGMLLREILIDEN--LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 360 ~~~g~~vg~-~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~--l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~k 436 (800)
...|..+|. .+.++...-...+|++||||+|++++..++. ..++.++|+|||+ |+++++|-..+-..+....+..|
T Consensus 170 fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQ 248 (758)
T KOG0343|consen 170 FSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQ 248 (758)
T ss_pred cccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhhe
Confidence 666666663 3444544456788999999999999988876 4678899999999 99999987666666666677889
Q ss_pred EEEeccCCC--hHHHhhhhcCCCcccCCC------CccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 003721 437 LIVTSATLD--AERFSGYFFNCNIFSIPG------RTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQE 508 (800)
Q Consensus 437 iI~lSATl~--~~~~~~~f~~~~~~~i~g------~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~ 508 (800)
.+++|||.. ..++++.-+..|.+...+ .+-.+...|...+. ...+..+.....+....++|||++|.+
T Consensus 249 TLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l----~~Ki~~L~sFI~shlk~K~iVF~SscK 324 (758)
T KOG0343|consen 249 TLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL----EDKIDMLWSFIKSHLKKKSIVFLSSCK 324 (758)
T ss_pred eeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh----hhHHHHHHHHHHhccccceEEEEehhh
Confidence 999999995 457777655655432211 12223333433333 344455555555666778999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCcccee
Q 003721 509 EIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNV 588 (800)
Q Consensus 509 ~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~ 588 (800)
++..+++.++.. .|++.++.+||.|.+..|..++..|-...--||+||+++++|+|+|.|++||.+++
T Consensus 325 qvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC----- 392 (758)
T KOG0343|consen 325 QVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC----- 392 (758)
T ss_pred HHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecC-----
Confidence 999999988765 36899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 589 YNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 589 yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
|...++|+||+||+.|.+ .|.|+.+.++.+
T Consensus 393 -------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 393 -------------PEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred -------------chhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 999999999999999999 899999999766
No 42
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=322.81 Aligned_cols=348 Identities=19% Similarity=0.190 Sum_probs=258.2
Q ss_pred hhcCCCCCCcchHHHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhh
Q 003721 251 RGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAG 330 (800)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~ 330 (800)
-.+.+.++++|.+.+++.+-.++. . .+...+.+.-.-..++|-+-++.++++++.|.+|-||||||..|.+++.-..
T Consensus 156 ~~I~veGd~ipPPIksF~eMKFP~--~-~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~ 232 (610)
T KOG0341|consen 156 LHILVEGDDIPPPIKSFKEMKFPK--P-LLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFA 232 (610)
T ss_pred heEEeeCCCCCCchhhhhhccCCH--H-HHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHH
Confidence 345688999999999876433322 1 2222233444444566999999999999999999999999988776665332
Q ss_pred c----------cCCCeEEEecchHHHHHHHHHHHHHHh------CCc---ccceee-eeeec-ccccCCCceEEEechHH
Q 003721 331 Y----------TTKGKIGCTQPRRVAATSVAKRVAEEF------GCR---LGEEVG-YAIRF-EDCTGPDTVIKYMTDGM 389 (800)
Q Consensus 331 ~----------~~~~~il~~~P~r~la~qva~rv~~~~------g~~---~g~~vg-~~~~~-~~~~~~~~~I~~~T~g~ 389 (800)
+ ..+..-++++|.|+||.|...-+.+.+ |.+ .+..+| ..++. -+....+..|+++|||+
T Consensus 233 LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGR 312 (610)
T KOG0341|consen 233 LEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGR 312 (610)
T ss_pred HHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcch
Confidence 2 235578899999999999876654432 211 111111 11111 12345678999999999
Q ss_pred HHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChH--HHhhhhcCCCcccCCCCcc
Q 003721 390 LLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAE--RFSGYFFNCNIFSIPGRTF 466 (800)
Q Consensus 390 Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~--~~~~~f~~~~~~~i~g~~~ 466 (800)
|.+.+.... .|.-+.++.+|||+ |+++++|-..+-..+..-....|.+++|||++.. .|+..-+..|+....||.-
T Consensus 313 L~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG 391 (610)
T KOG0341|consen 313 LMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG 391 (610)
T ss_pred HHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc
Confidence 999986554 58889999999999 9999998766655555445677899999999864 5565555556555555544
Q ss_pred ceeEEeccccchhhHH--HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHH
Q 003721 467 PVDINYSRQEVTDYLD--SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEI 544 (800)
Q Consensus 467 ~v~~~~~~~~~~~~~~--~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~ 544 (800)
.......+.. +|+. +.+..++.. ......++|||+..+.+++.+.++|.-. +..+..+|||.++++
T Consensus 392 AAsldViQev--EyVkqEaKiVylLeC-LQKT~PpVLIFaEkK~DVD~IhEYLLlK---------GVEavaIHGGKDQed 459 (610)
T KOG0341|consen 392 AASLDVIQEV--EYVKQEAKIVYLLEC-LQKTSPPVLIFAEKKADVDDIHEYLLLK---------GVEAVAIHGGKDQED 459 (610)
T ss_pred ccchhHHHHH--HHHHhhhhhhhHHHH-hccCCCceEEEeccccChHHHHHHHHHc---------cceeEEeecCcchhH
Confidence 3333333222 3332 333333333 3445678999999999999999998655 888999999999999
Q ss_pred HHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeE
Q 003721 545 QSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKC 623 (800)
Q Consensus 545 R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~ 623 (800)
|...++.|+.|+-+|||||++|..|+|+|+|.+||||++ |-..++|+||+||+||.| .|.+
T Consensus 460 R~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGRsg~~GiA 521 (610)
T KOG0341|consen 460 RHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGRSGKTGIA 521 (610)
T ss_pred HHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCCCCCccee
Confidence 999999999999999999999999999999999999999 999999999999999999 8999
Q ss_pred EEccChHHh
Q 003721 624 YRLYTESAY 632 (800)
Q Consensus 624 ~~L~t~~~~ 632 (800)
-.|..+...
T Consensus 522 TTfINK~~~ 530 (610)
T KOG0341|consen 522 TTFINKNQE 530 (610)
T ss_pred eeeecccch
Confidence 988876543
No 43
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=310.85 Aligned_cols=309 Identities=20% Similarity=0.235 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchHHHHHHHHHHHHH---HhCCcccceee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRRVAATSVAKRVAE---EFGCRLGEEVG 367 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r~la~qva~rv~~---~~g~~~g~~vg 367 (800)
++|..+|++|++|+++|.+|.||||||+++.+++++.+-.. +--.+++.|||+||.|+++++.. .++.++...+|
T Consensus 32 piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivG 111 (442)
T KOG0340|consen 32 PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVG 111 (442)
T ss_pred chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEc
Confidence 34999999999999999999999999999999999985443 23678999999999999999853 23334434444
Q ss_pred ee--eecccccCCCceEEEechHHHHHHHhcCC-----CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 368 YA--IRFEDCTGPDTVIKYMTDGMLLREILIDE-----NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 368 ~~--~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-----~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
.. +......+...+++++|||++-..+.++. .++++.++|+|||+ |.+..+|-..+--......+..+.+++
T Consensus 112 G~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~~RQtLlf 190 (442)
T KOG0340|consen 112 GTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPKPRQTLLF 190 (442)
T ss_pred cHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccCCCccceEEE
Confidence 32 12222345678899999999999887763 38899999999999 888877654433333334445699999
Q ss_pred ccCCChHHHhhhhcCCCccc--------CCCCccc--eeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH
Q 003721 441 SATLDAERFSGYFFNCNIFS--------IPGRTFP--VDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEI 510 (800)
Q Consensus 441 SATl~~~~~~~~f~~~~~~~--------i~g~~~~--v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i 510 (800)
|||+... .+...++|+-. +++-..+ +...|...+. +-.+..+..++....+++.+.++||+++..+|
T Consensus 191 SATitd~--i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c 267 (442)
T KOG0340|consen 191 SATITDT--IKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVHLLRDFENKENGSIMIFVNTTREC 267 (442)
T ss_pred EeehhhH--HHHhhcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHHHHhhhhhccCceEEEEeehhHHH
Confidence 9999643 22222333211 0111100 1111111111 11223333444444555688999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeec
Q 003721 511 DFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 590 (800)
Q Consensus 511 ~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd 590 (800)
+.++..|... ++.+..+||.|++.+|-..+.+|+++..+|||||++|++|+|||.|..|||+++
T Consensus 268 Q~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~di------- 331 (442)
T KOG0340|consen 268 QLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDI------- 331 (442)
T ss_pred HHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCC-------
Confidence 9999998876 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 591 PKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 591 ~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.++..|+||+||+.|.| .|.++.++++.|.
T Consensus 332 -----------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 332 -----------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred -----------CCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 999999999999999999 8999999997665
No 44
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=321.81 Aligned_cols=310 Identities=22% Similarity=0.247 Sum_probs=246.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc-------CCCeEEEecchHHHHHHHHHH---HHHHhCC
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT-------TKGKIGCTQPRRVAATSVAKR---VAEEFGC 360 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~-------~~~~il~~~P~r~la~qva~r---v~~~~g~ 360 (800)
.+++|.++++..+.+++|+.+|-||||||.++..+++-+... .+...+|++|+|+||.|+... +.+.+|.
T Consensus 246 ptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl 325 (731)
T KOG0339|consen 246 PTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGL 325 (731)
T ss_pred CCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccc
Confidence 345599999999999999999999999999999988866433 244678999999999997754 3344444
Q ss_pred cccceeeeeeecccc--cCCCceEEEechHHHHHHHh-cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceE
Q 003721 361 RLGEEVGYAIRFEDC--TGPDTVIKYMTDGMLLREIL-IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRL 437 (800)
Q Consensus 361 ~~g~~vg~~~~~~~~--~~~~~~I~~~T~g~Ll~~l~-~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ki 437 (800)
.+....|.....+.. ...++.|+++|||+|++... ...++.+++++|+|||+ |+++++|..++-......+|+.|.
T Consensus 326 ~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQt 404 (731)
T KOG0339|consen 326 RVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQT 404 (731)
T ss_pred eEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceE
Confidence 443333322222221 12678999999999999984 45579999999999999 999999999988888889999999
Q ss_pred EEeccCCCh--HHHhhhhcCCCcccCCCCccc----e--eEEeccccchhhHHHHHHHHHHH-hhcCCCCCEEEEcCCHH
Q 003721 438 IVTSATLDA--ERFSGYFFNCNIFSIPGRTFP----V--DINYSRQEVTDYLDSALITVLQI-HVDEPEGDILLFLTGQE 508 (800)
Q Consensus 438 I~lSATl~~--~~~~~~f~~~~~~~i~g~~~~----v--~~~~~~~~~~~~~~~~l~~v~~i-~~~~~~g~iLVF~~s~~ 508 (800)
|++|||+.. +.+++-++..|+-.+.|..-. + .+..... -..++.-++.. -.....|++|+|++-+.
T Consensus 405 llFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s-----~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPS-----EEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccC-----cHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 999999974 688888888777555542211 1 1111111 11222222222 12235789999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCcccee
Q 003721 509 EIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNV 588 (800)
Q Consensus 509 ~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~ 588 (800)
+++.++..|.-. ++.+..+||++.+.+|.+++..|+.+...|+|||+++++|+|||++..||+|++
T Consensus 480 ~~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~----- 545 (731)
T KOG0339|consen 480 DAEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDF----- 545 (731)
T ss_pred CHHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccc-----
Confidence 999999998765 899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 589 YNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 589 yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
..+++.+.||+||+||.| .|.+|.|.|+.+-.
T Consensus 546 -------------ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 -------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred -------------cchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 889999999999999999 89999999988753
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-35 Score=349.99 Aligned_cols=304 Identities=19% Similarity=0.186 Sum_probs=221.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeee
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAI 370 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~ 370 (800)
.+++|.++++++.+++++++++|||+|||+++.++++.. ++.++|++|+++|+.++..++.. +|..+....+ ..
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s-~~ 87 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----KGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS-TL 87 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC-CC
Confidence 456799999999999999999999999999988877643 56889999999999999988765 4554332211 11
Q ss_pred ecc-------cccCCCceEEEechHHHHHHH-hcCCCCCCCceEEEeccCcCCCC-cchH--HHHHHHHHhcCCCceEEE
Q 003721 371 RFE-------DCTGPDTVIKYMTDGMLLREI-LIDENLSQYSVIMLDEAHERTIN-TDVL--FGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 371 ~~~-------~~~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~~~-~d~l--~~~lk~l~~~~~~~kiI~ 439 (800)
... ........|+|+||+.+.... .......++++|||||||+.+-. .++- ...+..+....|+.++++
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~ 167 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIA 167 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEE
Confidence 111 112346789999999886432 22234578999999999964422 3332 223444455567778999
Q ss_pred eccCCChHHH---hhhhcC-CCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 003721 440 TSATLDAERF---SGYFFN-CNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACE 515 (800)
Q Consensus 440 lSATl~~~~~---~~~f~~-~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~ 515 (800)
+|||++.... ..++.- .+.....+ .....+.|......+. ...+........++++||||+++++++.+++
T Consensus 168 lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~ 242 (591)
T TIGR01389 168 LTATADAETRQDIRELLRLADANEFITS-FDRPNLRFSVVKKNNK----QKFLLDYLKKHRGQSGIIYASSRKKVEELAE 242 (591)
T ss_pred EEeCCCHHHHHHHHHHcCCCCCCeEecC-CCCCCcEEEEEeCCCH----HHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 9999986533 333321 11111111 1111222222111111 1222333333336789999999999999999
Q ss_pred HHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCc
Q 003721 516 SLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRL 595 (800)
Q Consensus 516 ~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~ 595 (800)
.|... ++.+.++||+|+.++|..+++.|.+|..+|||||+++++|||+|+|++||++++
T Consensus 243 ~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~------------ 301 (591)
T TIGR01389 243 RLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM------------ 301 (591)
T ss_pred HHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC------------
Confidence 98764 678899999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 596 DSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 596 ~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.|.++|+||+|||||.| +|.|+.+|+..+.
T Consensus 302 ------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 302 ------PGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred ------CCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 999999999999999999 8999999998775
No 46
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=330.91 Aligned_cols=310 Identities=19% Similarity=0.177 Sum_probs=233.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC------------CCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT------------KGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~------------~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
.++|+-.++.+.+|++++++|+||||||.+++.++++.++.. .+.+++++|||+||.|++.+..+..+
T Consensus 98 tpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~ 177 (482)
T KOG0335|consen 98 TPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSY 177 (482)
T ss_pred CcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcc
Confidence 455999999999999999999999999999999999876654 25899999999999999999766443
Q ss_pred Ccc-cceeeeeee---c-ccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCC-cchHHHHHHHHHhc-
Q 003721 360 CRL-GEEVGYAIR---F-EDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTIN-TDVLFGLLKQLVKR- 431 (800)
Q Consensus 360 ~~~-g~~vg~~~~---~-~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~-~d~l~~~lk~l~~~- 431 (800)
... -..++|.-+ . ......++.|.++|||.|.+.+.... .|.++.++|||||+ |+++ ++|...+-+.+...
T Consensus 178 ~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~ 256 (482)
T KOG0335|consen 178 LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLG 256 (482)
T ss_pred cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccC
Confidence 211 111223221 1 11234678999999999999886544 59999999999999 8999 88877766655543
Q ss_pred ---CCCceEEEeccCCChH--HHhhhhcCC-Cccc---CCCCc-cceeEEeccccchhhHHHHHHHHHHHhhcCCCC---
Q 003721 432 ---RPDLRLIVTSATLDAE--RFSGYFFNC-NIFS---IPGRT-FPVDINYSRQEVTDYLDSALITVLQIHVDEPEG--- 498 (800)
Q Consensus 432 ---~~~~kiI~lSATl~~~--~~~~~f~~~-~~~~---i~g~~-~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g--- 498 (800)
..+.+.+++|||.+.+ ....+|... .++. ..|+. -.+...+......+.....+..+.........+
T Consensus 257 ~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~ 336 (482)
T KOG0335|consen 257 MPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPK 336 (482)
T ss_pred CCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcc
Confidence 2367999999999853 455555433 2211 11111 122222222222222222222222222111233
Q ss_pred --CEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCee
Q 003721 499 --DILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIF 576 (800)
Q Consensus 499 --~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~ 576 (800)
.++|||.+++.+..++..|... ++...++||..++.+|.+.++.|++|...|+|||+++++|+|||+|+
T Consensus 337 ~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~ 407 (482)
T KOG0335|consen 337 WEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVK 407 (482)
T ss_pred cceEEEEeeccchhhHHHHHHhcC---------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCc
Confidence 6999999999999999999775 78899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccCh
Q 003721 577 YVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTE 629 (800)
Q Consensus 577 ~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~ 629 (800)
+||+|++ |....+|+||+||+||.| .|.+..|+..
T Consensus 408 hVInyDm------------------P~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 408 HVINYDM------------------PADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred eeEEeec------------------CcchhhHHHhccccccCCCCceeEEEecc
Confidence 9999999 999999999999999999 8999999983
No 47
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-36 Score=300.08 Aligned_cols=310 Identities=17% Similarity=0.233 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc--CCCeEEEecchHHHHHHHHHHHHHH---hCCcccceee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT--TKGKIGCTQPRRVAATSVAKRVAEE---FGCRLGEEVG 367 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~--~~~~il~~~P~r~la~qva~rv~~~---~g~~~g~~vg 367 (800)
.+|+.+++.|.++++||..+..|+|||..+..-++...-. +.-.++++.|+|+||.|+.+.+... ++..+...+|
T Consensus 52 ~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacig 131 (400)
T KOG0328|consen 52 AIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIG 131 (400)
T ss_pred HHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEec
Confidence 5799999999999999999999999997766555543221 2348999999999999998876542 3333323333
Q ss_pred eeeeccc--ccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 368 YAIRFED--CTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 368 ~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
...-.++ ...-+..++..|||+.++++.... ....+.++|+|||++ +++-++-..+........|+.|++++|||+
T Consensus 132 g~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~SATl 210 (400)
T KOG0328|consen 132 GKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVSATL 210 (400)
T ss_pred CCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEeccC
Confidence 2221121 123567889999999999886554 478899999999996 666677777777777778899999999999
Q ss_pred ChH--HHhhhhcCCCcccCCC-Cccc---eeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHH
Q 003721 445 DAE--RFSGYFFNCNIFSIPG-RTFP---VDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLC 518 (800)
Q Consensus 445 ~~~--~~~~~f~~~~~~~i~g-~~~~---v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~ 518 (800)
+.+ ...+.|...|+-.... ...+ +..+|......++ +..++..+.....-.+.+||||++..++.+.+.+.
T Consensus 211 p~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~ 287 (400)
T KOG0328|consen 211 PHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 287 (400)
T ss_pred cHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHHHHHhhhhehheEEEEecccchhhHHHHHHH
Confidence 875 4455665554421111 1111 2223332222222 34455555444445679999999999999999888
Q ss_pred HHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccc
Q 003721 519 EKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSL 598 (800)
Q Consensus 519 ~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l 598 (800)
+. .+.+...||+|++++|+++...|++|+.+||++|++.++|+|+|.|.+||||++
T Consensus 288 ~~---------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL--------------- 343 (400)
T KOG0328|consen 288 EA---------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL--------------- 343 (400)
T ss_pred hh---------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC---------------
Confidence 76 789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 599 VITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 599 ~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|...+.|+||+||.||.| .|.++-|...++..
T Consensus 344 ---P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 344 ---PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred ---CccHHHHhhhhccccccCCcceEEEEecHHHHH
Confidence 999999999999999999 89999999987753
No 48
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=317.25 Aligned_cols=327 Identities=18% Similarity=0.208 Sum_probs=242.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc--------CCCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT--------TKGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~--------~~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
-....+|.++|+.+++++|++|.++||||||+++.+|+.+.... .|...++++|||+||.|++..+.+....
T Consensus 158 ~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~ 237 (708)
T KOG0348|consen 158 SAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237 (708)
T ss_pred CccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999987543 2457899999999999999998887754
Q ss_pred cccceeeeeeeccccc------CCCceEEEechHHHHHHHhcCCC--CCCCceEEEeccCcCCCCcchHHH---HHHHHH
Q 003721 361 RLGEEVGYAIRFEDCT------GPDTVIKYMTDGMLLREILIDEN--LSQYSVIMLDEAHERTINTDVLFG---LLKQLV 429 (800)
Q Consensus 361 ~~g~~vg~~~~~~~~~------~~~~~I~~~T~g~Ll~~l~~~~~--l~~~~~IIiDEaHer~~~~d~l~~---~lk~l~ 429 (800)
---..-|+-+..+... ..+..|++.|||+|++.+.+... ++++.+||+||++ |.++.+|-.. +++.+-
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~ 316 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVH 316 (708)
T ss_pred ceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHh
Confidence 2212223444445443 35789999999999999987654 7889999999999 8888876433 333331
Q ss_pred h----cC------CCceEEEeccCCCh--HHHhhhhcCCCcccC-------------------CC----------Cccce
Q 003721 430 K----RR------PDLRLIVTSATLDA--ERFSGYFFNCNIFSI-------------------PG----------RTFPV 468 (800)
Q Consensus 430 ~----~~------~~~kiI~lSATl~~--~~~~~~f~~~~~~~i-------------------~g----------~~~~v 468 (800)
. .. +..+-+++|||+.. .++++.-+..|+..- ++ -+-.+
T Consensus 317 ~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL 396 (708)
T KOG0348|consen 317 SIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQL 396 (708)
T ss_pred hccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHh
Confidence 1 11 23677899999963 455554443333211 00 00011
Q ss_pred eEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhh----C-----CC----CCCeEEEE
Q 003721 469 DINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKAL----G-----KD----VPELVVLP 535 (800)
Q Consensus 469 ~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~----~-----~~----~~~~~v~~ 535 (800)
..+|...|..-.+......+.+....+...++|||+++.+.++.-+..+.+.+-.. . .+ ..+..+.-
T Consensus 397 ~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~r 476 (708)
T KOG0348|consen 397 LQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYR 476 (708)
T ss_pred hhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEE
Confidence 22333333333344455555666666666789999999999999888887765330 0 01 12456888
Q ss_pred EcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhccc
Q 003721 536 VYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRA 615 (800)
Q Consensus 536 lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRa 615 (800)
+||+|++++|..+|+.|......||+||++|++|+|+|+|+.||.|+. |.+.++|+||+||+
T Consensus 477 LHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~------------------P~s~adylHRvGRT 538 (708)
T KOG0348|consen 477 LHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP------------------PFSTADYLHRVGRT 538 (708)
T ss_pred ecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC------------------CCCHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999998888 99999999999999
Q ss_pred CCCC-CCeEEEccC--hHHhhh
Q 003721 616 GRTG-PGKCYRLYT--ESAYRS 634 (800)
Q Consensus 616 GR~g-~G~~~~L~t--~~~~~~ 634 (800)
.|.| .|.+..+.. +.+|.+
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred hhccCCCceEEEecccHHHHHH
Confidence 9999 788776665 455544
No 49
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.2e-35 Score=334.16 Aligned_cols=473 Identities=18% Similarity=0.222 Sum_probs=317.7
Q ss_pred hHHHHHHHHHH-HcCCeEEEEccCCCchHHHHHHHHHHhhcc---------CCCeEEEecchHHHHHHHHHHHHHHh---
Q 003721 292 FKLKNELIQAV-HDNQVLILIGETGSGKTTQLAQYLAEAGYT---------TKGKIGCTQPRRVAATSVAKRVAEEF--- 358 (800)
Q Consensus 292 ~~~Q~~~i~~i-~~~~~viv~apTGSGKT~~~~~~lle~~~~---------~~~~il~~~P~r~la~qva~rv~~~~--- 358 (800)
..+|..+.+.. ..+.+.|||||||||||-.+.+.++..... .+-+|+|++|+++||.++++.+.+.+
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 46799999875 678899999999999999999988876443 23499999999999999999998877
Q ss_pred CCcccceeeeeeecccccCCCceEEEechHHH---HHHHhcC-CCCCCCceEEEeccCcCCCCcc---hHHHHHHHHH--
Q 003721 359 GCRLGEEVGYAIRFEDCTGPDTVIKYMTDGML---LREILID-ENLSQYSVIMLDEAHERTINTD---VLFGLLKQLV-- 429 (800)
Q Consensus 359 g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~L---l~~l~~~-~~l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~-- 429 (800)
|..++..+|...-... .-..+.|+++||+.. .|....+ ..++.+.+|||||+| +++.+ .+..++.+..
T Consensus 192 gi~v~ELTGD~ql~~t-ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH--lLhd~RGpvlEtiVaRtlr~ 268 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKT-EIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH--LLHDDRGPVLETIVARTLRL 268 (1230)
T ss_pred cceEEEecCcchhhHH-HHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh--hhcCcccchHHHHHHHHHHH
Confidence 4566666663322221 135789999999953 3333322 247889999999999 55554 4555555554
Q ss_pred --hcCCCceEEEeccCCChH-HHhhhhcCC---CcccCCC--CccceeEEeccccch------hhH-HHHHHHHHHHhhc
Q 003721 430 --KRRPDLRLIVTSATLDAE-RFSGYFFNC---NIFSIPG--RTFPVDINYSRQEVT------DYL-DSALITVLQIHVD 494 (800)
Q Consensus 430 --~~~~~~kiI~lSATl~~~-~~~~~f~~~---~~~~i~g--~~~~v~~~~~~~~~~------~~~-~~~l~~v~~i~~~ 494 (800)
.....+|++++|||+|+- +.+.|+... .++.+.+ |+.|++..+...... +.+ +.....+.+.+.
T Consensus 269 vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~- 347 (1230)
T KOG0952|consen 269 VESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ- 347 (1230)
T ss_pred HHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH-
Confidence 345689999999999875 555544332 2344444 455555544433222 111 122334444433
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCC-----C--C-------eEEEEEcCCCCHHHHHhhcCcCCCCCceEE
Q 003721 495 EPEGDILLFLTGQEEIDFACESLCEKIKALGKDV-----P--E-------LVVLPVYSALPSEIQSRIFEPAPPGGRKVV 560 (800)
Q Consensus 495 ~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~-----~--~-------~~v~~lh~~l~~~~R~~i~~~f~~g~~kVL 560 (800)
.+.+++|||.++.++...|+.|.+.....+... + + ..+..||+||..++|..+++.|..|.++|+
T Consensus 348 -~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL 426 (1230)
T KOG0952|consen 348 -EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVL 426 (1230)
T ss_pred -cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEE
Confidence 367899999999999999999988765443211 1 1 357789999999999999999999999999
Q ss_pred EeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHH--hhhh
Q 003721 561 VATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESA--YRSE 635 (800)
Q Consensus 561 VAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~--~~~~ 635 (800)
+||.++++|+|+|+-.++| ..+.+||++.|. ..-.+..+.+|..|||||++ .|..+.+.+.+. .+..
T Consensus 427 ~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~----f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 427 CCTATLAWGVNLPAYAVII----KGTQVYDSSKGS----FVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred EecceeeeccCCcceEEEe----cCCcccccccCc----eeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 9999999999999988888 778999998874 22567889999999999999 677777666432 2222
Q ss_pred CC---------------CCCCcchhccCchhHHHHHHHcCCC--------Ccc----ccc-CCCCCCh-----HHHHHHH
Q 003721 636 MS---------------PTTIPEIQRINLVHTTLTMKAMGIN--------NLL----SFD-FVDPPSP-----QALISAM 682 (800)
Q Consensus 636 ~~---------------~~~~pei~r~~L~~~~L~lk~~~i~--------~~~----~f~-~~~~p~~-----~~i~~al 682 (800)
+. ++-..||....+.++--.+.+++-. +.. ... ....|.. +.+..++
T Consensus 499 Ll~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~ 578 (1230)
T KOG0952|consen 499 LLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAA 578 (1230)
T ss_pred HHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHH
Confidence 22 2223344333333333333333211 111 111 1112222 1345566
Q ss_pred HHHHHcCCc--ccCC---ccchhhhhhhcCCCChHHHHHHHHHhh-cCCHHHHHHHHHHccCCC-CCcCchhHHHHHHH-
Q 003721 683 EQLYSLGAL--DEEG---LLTKLGKKMAEFPLDPPLSKMLLASVD-LGCSDEILTIIAMIQTGH-IFTRPRERQAKADE- 754 (800)
Q Consensus 683 ~~L~~lgal--d~~g---~lT~lG~~~~~~pl~p~~~k~l~~~~~-~~c~~~~l~i~a~ls~~~-~f~~p~~~~~~~~~- 754 (800)
..|.....+ |..+ ..|.+||.|+.+++..++.+.++.... +-..+++|.|+|+-+.-+ +=.|--+++...+.
T Consensus 579 ~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~ 658 (1230)
T KOG0952|consen 579 MELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELN 658 (1230)
T ss_pred HHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHH
Confidence 666655444 4433 589999999999999999999999998 778899999998876533 32232222221111
Q ss_pred ----HHhhcCCCCCCHHHHHHHHHHHH
Q 003721 755 ----KRARFFQPEGDHLTLLAVYEAWK 777 (800)
Q Consensus 755 ----~~~~f~~~~~D~~~~l~~~~~~~ 777 (800)
.+..|....|+-..++..|..-.
T Consensus 659 ~~~~~~~~~~~~~gk~nil~q~~Is~~ 685 (1230)
T KOG0952|consen 659 EDSCEKYPFGGEKGKVNILLQAYISRT 685 (1230)
T ss_pred hcccccccccccchhHHHHHHhhhhcc
Confidence 12224444678888888887643
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-34 Score=352.64 Aligned_cols=313 Identities=19% Similarity=0.193 Sum_probs=217.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc--------CCCeEEEecchHHHHHHHHHHHHHH-----
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT--------TKGKIGCTQPRRVAATSVAKRVAEE----- 357 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~--------~~~~il~~~P~r~la~qva~rv~~~----- 357 (800)
++++|.++++.+.++++++++||||||||.++.+++++.... .+.+++|++|+|+|+.|+.+++.+.
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998876542 2347999999999999998865431
Q ss_pred -----hCCcc-----cceeeeeeeccc--ccCCCceEEEechHHHHHHHhcCC---CCCCCceEEEeccCcCCCCcc---
Q 003721 358 -----FGCRL-----GEEVGYAIRFED--CTGPDTVIKYMTDGMLLREILIDE---NLSQYSVIMLDEAHERTINTD--- 419 (800)
Q Consensus 358 -----~g~~~-----g~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~~~~d--- 419 (800)
.|..+ +...|.....+. .......|+++||+.|...+.... .+.++++|||||+|+ ..+..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 12222 111221111110 112356899999999876553322 478999999999994 33322
Q ss_pred hHHHHHHHHHhcC-CCceEEEeccCCCh-HHHhhhhcCCC-------cccCCC---CccceeEEecc-----ccchhhHH
Q 003721 420 VLFGLLKQLVKRR-PDLRLIVTSATLDA-ERFSGYFFNCN-------IFSIPG---RTFPVDINYSR-----QEVTDYLD 482 (800)
Q Consensus 420 ~l~~~lk~l~~~~-~~~kiI~lSATl~~-~~~~~~f~~~~-------~~~i~g---~~~~v~~~~~~-----~~~~~~~~ 482 (800)
.+...+.++.... ++.++|++|||+++ +.+..++.+.. +..+.. +.+.+.+.... ........
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~ 271 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISE 271 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHH
Confidence 3444455555443 67899999999975 45565554321 111111 11111111110 00011111
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEe
Q 003721 483 SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVA 562 (800)
Q Consensus 483 ~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVA 562 (800)
.....+..... ..+++||||||+..++.++..|.+.+... ..+..+.+|||+|++++|..+++.|++|.++||||
T Consensus 272 ~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVa 346 (876)
T PRK13767 272 ALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVS 346 (876)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 22222333222 25689999999999999999998754221 12467899999999999999999999999999999
Q ss_pred ccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC----CCeEEEcc
Q 003721 563 TNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG----PGKCYRLY 627 (800)
Q Consensus 563 T~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g----~G~~~~L~ 627 (800)
|+++++|||+|++++||++|. |.|.++|+||+|||||.+ .|.++...
T Consensus 347 Ts~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 347 STSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred CChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999 999999999999999874 46666643
No 51
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=319.30 Aligned_cols=309 Identities=21% Similarity=0.241 Sum_probs=224.9
Q ss_pred hHHHHHHHHHHHcC-CeEEEEccCCCchHHHHHHHHHHhhccC-------------CCe--EEEecchHHHHHHHHHHHH
Q 003721 292 FKLKNELIQAVHDN-QVLILIGETGSGKTTQLAQYLAEAGYTT-------------KGK--IGCTQPRRVAATSVAKRVA 355 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~-~~viv~apTGSGKT~~~~~~lle~~~~~-------------~~~--il~~~P~r~la~qva~rv~ 355 (800)
.++|...++++..+ .+++..|+||||||++|..|+++..... +.+ .+++.|||+||.|+.+.+.
T Consensus 205 t~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ 284 (731)
T KOG0347|consen 205 TEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLK 284 (731)
T ss_pred ccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHH
Confidence 45599999997777 7999999999999999999999832211 223 8899999999999998875
Q ss_pred HHh---CCcccceeee-ee-ecccccCCCceEEEechHHHHHHHhcCC----CCCCCceEEEeccCcCCCCcch---HHH
Q 003721 356 EEF---GCRLGEEVGY-AI-RFEDCTGPDTVIKYMTDGMLLREILIDE----NLSQYSVIMLDEAHERTINTDV---LFG 423 (800)
Q Consensus 356 ~~~---g~~~g~~vg~-~~-~~~~~~~~~~~I~~~T~g~Ll~~l~~~~----~l~~~~~IIiDEaHer~~~~d~---l~~ 423 (800)
... +..+...+|. ++ ..+...+....|+++|||+|+..+..+. .+.+++|+|+||++ |++.-+. +..
T Consensus 285 ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els~ 363 (731)
T KOG0347|consen 285 AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELSK 363 (731)
T ss_pred HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHHH
Confidence 433 4444444442 11 2222334567899999999999886554 47889999999999 8887664 344
Q ss_pred HHHHHH--hcCCCceEEEeccCCChHHHhhhh-----------cCCC------cccCCCCccceeEEeccccchhhHHHH
Q 003721 424 LLKQLV--KRRPDLRLIVTSATLDAERFSGYF-----------FNCN------IFSIPGRTFPVDINYSRQEVTDYLDSA 484 (800)
Q Consensus 424 ~lk~l~--~~~~~~kiI~lSATl~~~~~~~~f-----------~~~~------~~~i~g~~~~v~~~~~~~~~~~~~~~~ 484 (800)
+|+.+. ...+..|.+++|||++-..+...- .+.+ .+.+.+. |.-+.. .+........
T Consensus 364 lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k--pkiiD~--t~q~~ta~~l 439 (731)
T KOG0347|consen 364 LLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK--PKIIDL--TPQSATASTL 439 (731)
T ss_pred HHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCC--CeeEec--CcchhHHHHH
Confidence 555554 234578999999999633111100 0011 0122222 211111 1111111111
Q ss_pred HHHHHH-----------HhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCC
Q 003721 485 LITVLQ-----------IHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAP 553 (800)
Q Consensus 485 l~~v~~-----------i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~ 553 (800)
....+. .....-+|.+|||||+.+.+..++-.|... ++..+++|+.|.+.+|.+.++.|+
T Consensus 440 ~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QKqRLknLEkF~ 510 (731)
T KOG0347|consen 440 TESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQKQRLKNLEKFK 510 (731)
T ss_pred HHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---------CCCCchhhHHHHHHHHHHhHHHHh
Confidence 111111 112345899999999999999999888765 677889999999999999999999
Q ss_pred CCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 554 PGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 554 ~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
+..-.|||||++|++|+|||+|.+||||.. |.+.+.|+||+||+.|++ .|..+.|+.+.+.
T Consensus 511 ~~~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------PrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 511 QSPSGVLIATDVAARGLDIPGVQHVIHYQV------------------PRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred cCCCeEEEeehhhhccCCCCCcceEEEeec------------------CCccceeEecccccccccCCCeEEEEeChHHh
Confidence 999999999999999999999999999999 999999999999999999 8999999998764
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.1e-33 Score=336.66 Aligned_cols=373 Identities=16% Similarity=0.175 Sum_probs=248.4
Q ss_pred CCccccccCCCCchHHHHHHhhHHHHHHHHHHHHHHHHhhhcCCcccCCCCCCCCCchhhhHHHHHHhhcCCCCCCcchH
Q 003721 184 LSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEW 263 (800)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (800)
+.-|..-.-.++.-.+..+.|+..+++.|++-++.-+++...+.+-....+..+ +... ...+.|
T Consensus 377 ~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~--------------~~~~--~~~~~~ 440 (926)
T TIGR00580 377 LHLISRYVGGSGKNPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIK--------------GHAF--PPDLEW 440 (926)
T ss_pred cCceeeecCCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCCC--CCCHHH
Confidence 333444445566667778888988888877766655554433321111111100 0001 011233
Q ss_pred HHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcC------CeEEEEccCCCchHHHHHHHHHHhhccCCCeE
Q 003721 264 KKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDN------QVLILIGETGSGKTTQLAQYLAEAGYTTKGKI 337 (800)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~------~~viv~apTGSGKT~~~~~~lle~~~~~~~~i 337 (800)
.+... ..+ +...++.|.++++.+.++ .+.+++||||||||.++..+++... ..+.++
T Consensus 441 ~~~~~-~~~---------------~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al-~~g~qv 503 (926)
T TIGR00580 441 QQEFE-DSF---------------PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV-LDGKQV 503 (926)
T ss_pred HHHHH-HhC---------------CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH-HhCCeE
Confidence 33221 111 223467899999998774 6899999999999999988888763 456799
Q ss_pred EEecchHHHHHHHHHHHHHHhC---Ccccceeeeeeecc------cccCCCceEEEechHHHHHHHhcCCCCCCCceEEE
Q 003721 338 GCTQPRRVAATSVAKRVAEEFG---CRLGEEVGYAIRFE------DCTGPDTVIKYMTDGMLLREILIDENLSQYSVIML 408 (800)
Q Consensus 338 l~~~P~r~la~qva~rv~~~~g---~~~g~~vg~~~~~~------~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIi 408 (800)
++++||++||.|+++.+.+.++ ..++...|.....+ ........|+++|+..+ ..+..+.++++|||
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVI 579 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLII 579 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEe
Confidence 9999999999999999887663 22222222211101 11233578999999543 33446889999999
Q ss_pred eccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChHHHhhhhcC---CCcccC-CCCccceeEEeccccchhhHHHH
Q 003721 409 DEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFN---CNIFSI-PGRTFPVDINYSRQEVTDYLDSA 484 (800)
Q Consensus 409 DEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f~~---~~~~~i-~g~~~~v~~~~~~~~~~~~~~~~ 484 (800)
||+|.... .....+....++.++++||||+.+..+...+.+ ..++.. +....++...+..... ..+
T Consensus 580 DEahrfgv------~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i--- 649 (926)
T TIGR00580 580 DEEQRFGV------KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELV--- 649 (926)
T ss_pred ecccccch------hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHH---
Confidence 99994221 122334444678899999999877654433222 112222 2223455554433221 111
Q ss_pred HHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEecc
Q 003721 485 LITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATN 564 (800)
Q Consensus 485 l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~ 564 (800)
...+.... ..+++++||||+.++++.+++.|.+. .++..+..+||+|++++|+.+++.|++|+.+|||||+
T Consensus 650 ~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~-------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~ 720 (926)
T TIGR00580 650 REAIRREL--LRGGQVFYVHNRIESIEKLATQLREL-------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT 720 (926)
T ss_pred HHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHh-------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 11122211 13688999999999999999888764 2467899999999999999999999999999999999
Q ss_pred chhhcCCCCCeeEEEeCCCccceeecCCCCcccccccc-cCHHhHHHHhcccCCCC-CCeEEEccChH
Q 003721 565 IAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITP-ISQASALQRAGRAGRTG-PGKCYRLYTES 630 (800)
Q Consensus 565 iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p-~S~~~~~QR~GRaGR~g-~G~~~~L~t~~ 630 (800)
++++|||+|++++||.++. | .+.++|.||+||+||.| .|.||.++++.
T Consensus 721 iie~GIDIp~v~~VIi~~a------------------~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 721 IIETGIDIPNANTIIIERA------------------DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred hhhcccccccCCEEEEecC------------------CCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999996655 2 35678999999999999 89999999754
No 53
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=297.60 Aligned_cols=308 Identities=18% Similarity=0.221 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC--eEEEecchHHHHHHHH---HHHHHHhCCcccceee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG--KIGCTQPRRVAATSVA---KRVAEEFGCRLGEEVG 367 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~--~il~~~P~r~la~qva---~rv~~~~g~~~g~~vg 367 (800)
++|++.|+..+.|++++.-|..|+|||.++..|+++..-.... ..++++|+|+||.|.. +++++-+|..+-..+|
T Consensus 110 PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttG 189 (459)
T KOG0326|consen 110 PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTG 189 (459)
T ss_pred CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecC
Confidence 3499999999999999999999999999999999998544333 6789999999998754 5555666666655566
Q ss_pred eeeeccccc--CCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 368 YAIRFEDCT--GPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 368 ~~~~~~~~~--~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
...-.++.. .....++++|||++++...... .++++..+|+|||+ ..+..+|-..+-+.+....++.|+++.|||.
T Consensus 190 GT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 190 GTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSATF 268 (459)
T ss_pred CcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEeccc
Confidence 444333332 4567899999999999886554 59999999999999 6888888766666666667789999999999
Q ss_pred Ch--HHHhhhhcCCCc-ccCCCCc--cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 003721 445 DA--ERFSGYFFNCNI-FSIPGRT--FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCE 519 (800)
Q Consensus 445 ~~--~~~~~~f~~~~~-~~i~g~~--~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~ 519 (800)
|. ..|...++..|. +..-... .-+..+|.-..+. .++..+-.+.....-.+.|||||+...++.+|..+.+
T Consensus 269 P~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~----qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITe 344 (459)
T KOG0326|consen 269 PLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER----QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE 344 (459)
T ss_pred chhHHHHHHHhccCcceeehhhhhhhcchhhheeeechh----hhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHh
Confidence 84 466665555442 1111111 1222333322222 1222222222223345789999999999999998887
Q ss_pred HHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCccccc
Q 003721 520 KIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLV 599 (800)
Q Consensus 520 ~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~ 599 (800)
. ++.+..+|+.|-++.|+++|..|++|.++.||||+.+.+|||+++|++|||+++
T Consensus 345 l---------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDf---------------- 399 (459)
T KOG0326|consen 345 L---------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDF---------------- 399 (459)
T ss_pred c---------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCC----------------
Confidence 6 788999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 600 ITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 600 ~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.+.++|.||+||+||.| .|.++.|.|-++-
T Consensus 400 --pk~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 400 --PKNAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred --CCCHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 999999999999999999 9999999996654
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.4e-32 Score=337.64 Aligned_cols=372 Identities=16% Similarity=0.159 Sum_probs=243.2
Q ss_pred CccccccCCCCchHHHHHHhhHHHHHHHHHHHHHHHHhhhcCCcccCCCCCCCCCchhhhHHHHHHhhcCCCCCCcchHH
Q 003721 185 SPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWK 264 (800)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (800)
.-+..-.-++++-.+..+.|+..+++.|++-+++-++..+.+.+-..+ ++...+..... -..|.
T Consensus 527 ~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~--------------r~~~~~~~~~~--~~~~~ 590 (1147)
T PRK10689 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ--------------RAAKEGFAFKH--DREQY 590 (1147)
T ss_pred CcEeeecCCCCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhccCCCCCC--CHHHH
Confidence 334444455666677888899888887777666555544332211100 00001111111 13444
Q ss_pred HhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcC------CeEEEEccCCCchHHHHHHHHHHhhccCCCeEE
Q 003721 265 KNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDN------QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG 338 (800)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~------~~viv~apTGSGKT~~~~~~lle~~~~~~~~il 338 (800)
+... ..+. ....+.|.++++.+.++ .+++++|+||||||.++..+++.. ...+.+++
T Consensus 591 ~~~~-~~~~---------------~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvl 653 (1147)
T PRK10689 591 QLFC-DSFP---------------FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVA 653 (1147)
T ss_pred HHHH-HhCC---------------CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEE
Confidence 4332 2222 23456799999998876 799999999999999887666554 34577999
Q ss_pred EecchHHHHHHHHHHHHHHhC---Ccccceeeeeeeccc------ccCCCceEEEechHHHHHHHhcCCCCCCCceEEEe
Q 003721 339 CTQPRRVAATSVAKRVAEEFG---CRLGEEVGYAIRFED------CTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLD 409 (800)
Q Consensus 339 ~~~P~r~la~qva~rv~~~~g---~~~g~~vg~~~~~~~------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiD 409 (800)
|++||++||.|+++.+.+.++ ..++...|.....+. .......|+++|++.+. .+..+.++++||||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVID 729 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVD 729 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEe
Confidence 999999999999999887663 222222222111111 11245689999997542 33457899999999
Q ss_pred ccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChHHHh--hhh-cCCCcccCCC-CccceeEEeccccchhhHHHHH
Q 003721 410 EAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFS--GYF-FNCNIFSIPG-RTFPVDINYSRQEVTDYLDSAL 485 (800)
Q Consensus 410 EaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~--~~f-~~~~~~~i~g-~~~~v~~~~~~~~~~~~~~~~l 485 (800)
|+|+.. .. ....+....++.++++||||+.+..+. ... .+..++..+. ...++...+....... . .
T Consensus 730 EahrfG--~~----~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~-~---k 799 (1147)
T PRK10689 730 EEHRFG--VR----HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV-V---R 799 (1147)
T ss_pred chhhcc--hh----HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHH-H---H
Confidence 999432 11 223344456789999999998765332 222 2222332222 2234443332211111 1 1
Q ss_pred HHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccc
Q 003721 486 ITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNI 565 (800)
Q Consensus 486 ~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~i 565 (800)
..++.... .+|+++||||+.+.++.+++.|.+.+ ++..+..+||+|++++|.+++..|++|+.+|||||++
T Consensus 800 ~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI 870 (1147)
T PRK10689 800 EAILREIL--RGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 (1147)
T ss_pred HHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch
Confidence 12222111 26789999999999999999887652 4678899999999999999999999999999999999
Q ss_pred hhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccCh
Q 003721 566 AEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTE 629 (800)
Q Consensus 566 ae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~ 629 (800)
+++|||+|++++||.... . ..+.++|.||+||+||.| .|.||.++..
T Consensus 871 ierGIDIP~v~~VIi~~a--------d---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 871 IETGIDIPTANTIIIERA--------D---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred hhcccccccCCEEEEecC--------C---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999999992111 0 123467999999999999 8999998864
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-33 Score=314.36 Aligned_cols=303 Identities=18% Similarity=0.169 Sum_probs=221.3
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeec--
Q 003721 295 KNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRF-- 372 (800)
Q Consensus 295 Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~-- 372 (800)
|.++|+++.++++++++.|||+|||.++.+|.+-. .|-++++.|..+|...+...+. ..|......-......
T Consensus 22 Q~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----~G~TLVVSPLiSLM~DQV~~l~-~~Gi~A~~lnS~l~~~e~ 96 (590)
T COG0514 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----EGLTLVVSPLISLMKDQVDQLE-AAGIRAAYLNSTLSREER 96 (590)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----CCCEEEECchHHHHHHHHHHHH-HcCceeehhhcccCHHHH
Confidence 99999999999999999999999998887776533 5689999999999998887763 3333221111100011
Q ss_pred ----ccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCC-cchH--HHHHHHHHhcCCCceEEEeccCC
Q 003721 373 ----EDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTIN-TDVL--FGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 373 ----~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~-~d~l--~~~lk~l~~~~~~~kiI~lSATl 444 (800)
........+++|.+|++|......+. .-..+++++||||||-+-+ .||- ...+..+....|+++++.+|||.
T Consensus 97 ~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA 176 (590)
T COG0514 97 QQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATA 176 (590)
T ss_pred HHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCC
Confidence 11123467899999998865432111 2567899999999986533 3442 23355566667899999999999
Q ss_pred ChH---HHhhhhc-CCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHH
Q 003721 445 DAE---RFSGYFF-NCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEK 520 (800)
Q Consensus 445 ~~~---~~~~~f~-~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~ 520 (800)
+.. ++...+. +.+.+.+ +....-.+.|...+..+...... -+.. ......+..||||.|++.++.+++.|...
T Consensus 177 ~~~v~~DI~~~L~l~~~~~~~-~sfdRpNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~ 253 (590)
T COG0514 177 TPRVRDDIREQLGLQDANIFR-GSFDRPNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN 253 (590)
T ss_pred ChHHHHHHHHHhcCCCcceEE-ecCCCchhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC
Confidence 865 3333332 2221111 11111222333222221111111 2221 23445677899999999999999999876
Q ss_pred HHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccc
Q 003721 521 IKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVI 600 (800)
Q Consensus 521 l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~ 600 (800)
++.+.+|||||+.++|+.+.+.|.++..+|+|||+++++|||.|||++|||+++
T Consensus 254 ---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l----------------- 307 (590)
T COG0514 254 ---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL----------------- 307 (590)
T ss_pred ---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC-----------------
Confidence 799999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 601 TPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 601 ~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|.|.++|+|.+|||||.| +..|+.||++.|.
T Consensus 308 -P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 308 -PGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred -CCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 999999999999999999 9999999998875
No 56
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.7e-33 Score=321.74 Aligned_cols=322 Identities=20% Similarity=0.200 Sum_probs=238.0
Q ss_pred CcchHHHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCC----
Q 003721 259 DMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTK---- 334 (800)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~---- 334 (800)
.++.|.+.|+... | -.+.+.|.++++.+.+|++++|+||||||||.++.++++...+..+
T Consensus 7 ~l~~~v~~~~~~~--~--------------~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~ 70 (814)
T COG1201 7 ILDPRVREWFKRK--F--------------TSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKL 70 (814)
T ss_pred hcCHHHHHHHHHh--c--------------CCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCC
Confidence 3677777777433 1 1234569999999999999999999999999999999998876652
Q ss_pred ---CeEEEecchHHHHHHHHHHHH---HHhCCcccceeeeeeecccc--cCCCceEEEechHHHHHHHhcC---CCCCCC
Q 003721 335 ---GKIGCTQPRRVAATSVAKRVA---EEFGCRLGEEVGYAIRFEDC--TGPDTVIKYMTDGMLLREILID---ENLSQY 403 (800)
Q Consensus 335 ---~~il~~~P~r~la~qva~rv~---~~~g~~~g~~vg~~~~~~~~--~~~~~~I~~~T~g~Ll~~l~~~---~~l~~~ 403 (800)
-.++|+.|.|+|.+.+-.++. +++|..+....|.+...+.. ......|+++||+.|.-.+.+. ..|.++
T Consensus 71 ~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 71 EDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 278999999999999998875 45677665555544333322 2345789999999987766543 258999
Q ss_pred ceEEEeccCc-----CCCCcchHHHHHHHHHhcCCCceEEEeccCCCh-HHHhhhhcCC----CcccCCCC-ccceeEEe
Q 003721 404 SVIMLDEAHE-----RTINTDVLFGLLKQLVKRRPDLRLIVTSATLDA-ERFSGYFFNC----NIFSIPGR-TFPVDINY 472 (800)
Q Consensus 404 ~~IIiDEaHe-----r~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~-~~~~~~f~~~----~~~~i~g~-~~~v~~~~ 472 (800)
.+|||||+|+ |+.. +.-.+.++...-++++.|++|||..+ +..++|+.+. .++.+++. ...+.+..
T Consensus 151 r~VIVDEiHel~~sKRG~~---Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~ 227 (814)
T COG1201 151 RYVIVDEIHALAESKRGVQ---LALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVIS 227 (814)
T ss_pred cEEEeehhhhhhccccchh---hhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEe
Confidence 9999999997 3332 33334445444458999999999954 5666666443 34444432 23333333
Q ss_pred ccccch---hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhc
Q 003721 473 SRQEVT---DYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIF 549 (800)
Q Consensus 473 ~~~~~~---~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~ 549 (800)
...... ......+..+.++..+ ...+|||+||+..++.++..|.+.. ...+..|||+++.+.|..++
T Consensus 228 p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE 297 (814)
T COG1201 228 PVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVE 297 (814)
T ss_pred cCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHH
Confidence 222211 1122344444444433 3479999999999999999998762 36799999999999999999
Q ss_pred CcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC----CCeEEE
Q 003721 550 EPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG----PGKCYR 625 (800)
Q Consensus 550 ~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g----~G~~~~ 625 (800)
+.|++|..+++|||+.+|.|||+.+|+.||+++- |.|.+.+.||+||+|+.- .|..|.
T Consensus 298 ~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~ 359 (814)
T COG1201 298 ERLKEGELKAVVATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIA 359 (814)
T ss_pred HHHhcCCceEEEEccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEe
Confidence 9999999999999999999999999999999998 999999999999999765 354444
Q ss_pred cc
Q 003721 626 LY 627 (800)
Q Consensus 626 L~ 627 (800)
..
T Consensus 360 ~~ 361 (814)
T COG1201 360 ED 361 (814)
T ss_pred cC
Confidence 43
No 57
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=301.04 Aligned_cols=318 Identities=18% Similarity=0.225 Sum_probs=223.4
Q ss_pred cCCchHHHHHHHHHHHc---------CCeEEEEccCCCchHHHHHHHHHHhhccC---CCeEEEecchHHHHHHHHHHHH
Q 003721 288 SLPIFKLKNELIQAVHD---------NQVLILIGETGSGKTTQLAQYLAEAGYTT---KGKIGCTQPRRVAATSVAKRVA 355 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~---------~~~viv~apTGSGKT~~~~~~lle~~~~~---~~~il~~~P~r~la~qva~rv~ 355 (800)
..-.+++|..+++.++. .+++.|.||||||||+++.+|+.+....+ .-++++++|+|+|+.|+++.+.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~ 236 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFK 236 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHH
Confidence 34577889999998742 57999999999999999999999875543 2388999999999999999886
Q ss_pred HHh---CCcccceeeee-eeccc--ccC----CCceEEEechHHHHHHHhcCC--CCCCCceEEEeccCcCCCCcch---
Q 003721 356 EEF---GCRLGEEVGYA-IRFED--CTG----PDTVIKYMTDGMLLREILIDE--NLSQYSVIMLDEAHERTINTDV--- 420 (800)
Q Consensus 356 ~~~---g~~~g~~vg~~-~~~~~--~~~----~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~~~~d~--- 420 (800)
... |..++...|-. ...+. ..+ ...+|+++|||+|.+++.+.+ .|+++.++|||||+ |+++.-|
T Consensus 237 ~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~W 315 (620)
T KOG0350|consen 237 RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEW 315 (620)
T ss_pred HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHH
Confidence 654 33333333311 11111 111 134899999999999997654 48999999999999 7665432
Q ss_pred HHHHHH------------HHH-------------------hcCCCceEEEeccCC--ChHHHhhhhcCCC-cccCCCCcc
Q 003721 421 LFGLLK------------QLV-------------------KRRPDLRLIVTSATL--DAERFSGYFFNCN-IFSIPGRTF 466 (800)
Q Consensus 421 l~~~lk------------~l~-------------------~~~~~~kiI~lSATl--~~~~~~~~f~~~~-~~~i~g~~~ 466 (800)
+..++. .+. ...+.+..+++|||+ ++.++.++-.+.| .+.+.+.
T Consensus 316 l~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~-- 393 (620)
T KOG0350|consen 316 LDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP-- 393 (620)
T ss_pred HHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc--
Confidence 111111 111 112334467888888 4567776666655 3332211
Q ss_pred ceeEEeccccch--hh----HHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCC
Q 003721 467 PVDINYSRQEVT--DY----LDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSAL 540 (800)
Q Consensus 467 ~v~~~~~~~~~~--~~----~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l 540 (800)
.-..|.-.+.. .+ ..-....+..........++|+|+++.+.+..++..|.-.+.. +...+-.+.|++
T Consensus 394 -~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-----~~~~~s~~t~~l 467 (620)
T KOG0350|consen 394 -LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-----DNFKVSEFTGQL 467 (620)
T ss_pred -cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc-----ccchhhhhhhhh
Confidence 11122111100 00 0001112222223334668999999999999999988733322 244555688999
Q ss_pred CHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-
Q 003721 541 PSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG- 619 (800)
Q Consensus 541 ~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g- 619 (800)
..+.|.+.++.|..|.++|||||++++||||+.+|+.||||++ |.+...|+||+||++|+|
T Consensus 468 ~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~------------------P~~~ktyVHR~GRTARAgq 529 (620)
T KOG0350|consen 468 NGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP------------------PASDKTYVHRAGRTARAGQ 529 (620)
T ss_pred hHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC------------------CchhhHHHHhhcccccccC
Confidence 9999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCeEEEccChHHh
Q 003721 620 PGKCYRLYTESAY 632 (800)
Q Consensus 620 ~G~~~~L~t~~~~ 632 (800)
.|.||.+.+..+.
T Consensus 530 ~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 530 DGYAITLLDKHEK 542 (620)
T ss_pred CceEEEeeccccc
Confidence 8999999987654
No 58
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-34 Score=327.83 Aligned_cols=355 Identities=19% Similarity=0.195 Sum_probs=262.6
Q ss_pred hhHHHHHHhhcCCCCCCcchHHHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHH
Q 003721 243 ERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQL 322 (800)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~ 322 (800)
....+..+.++.+.+.++|.+...|....+..... ...++-..-+..++|.++|++|+++++||.+|.||||||..+
T Consensus 343 V~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il---~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af 419 (997)
T KOG0334|consen 343 VDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKIL---ETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAF 419 (997)
T ss_pred HHHhhcCccceeeccCCCCcccchHhhCCchHHHH---HHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhh
Confidence 33444455557788889999999998665543221 222222333666779999999999999999999999999999
Q ss_pred HHHHHHhhccC-------CCeEEEecchHHHHHHHHHHHHHHh---CCcccceeeeeeec--ccccCCCceEEEechHHH
Q 003721 323 AQYLAEAGYTT-------KGKIGCTQPRRVAATSVAKRVAEEF---GCRLGEEVGYAIRF--EDCTGPDTVIKYMTDGML 390 (800)
Q Consensus 323 ~~~lle~~~~~-------~~~il~~~P~r~la~qva~rv~~~~---g~~~g~~vg~~~~~--~~~~~~~~~I~~~T~g~L 390 (800)
.+|++.+...+ |+..++++|+|+||.|+.+.+.... +..+....|..-.- -......+.|++||||++
T Consensus 420 ~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRm 499 (997)
T KOG0334|consen 420 LLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRM 499 (997)
T ss_pred hcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchh
Confidence 99888765432 4578899999999999998765433 33332222211110 111224589999999999
Q ss_pred HHHHhcCC----CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChH--HHhhhhcCCCccc-CCC
Q 003721 391 LREILIDE----NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAE--RFSGYFFNCNIFS-IPG 463 (800)
Q Consensus 391 l~~l~~~~----~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~--~~~~~f~~~~~~~-i~g 463 (800)
++.+..+. .+.++.++|+|||+ |+++..|.....+.+...+|+.|++++|||.+.. .++...+..|+-. +.+
T Consensus 500 iD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~ 578 (997)
T KOG0334|consen 500 IDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGG 578 (997)
T ss_pred hhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEcc
Confidence 98875433 36777799999999 8999988888777777779999999999999864 4455455555432 222
Q ss_pred Ccc---ceeEEecccc-chhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCC
Q 003721 464 RTF---PVDINYSRQE-VTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSA 539 (800)
Q Consensus 464 ~~~---~v~~~~~~~~-~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~ 539 (800)
+.. .|+..+...+ ....+...+ .++ ......+++||||..++.|+.+.+.|.+. ++.+..+||+
T Consensus 579 ~svV~k~V~q~v~V~~~e~eKf~kL~-eLl--~e~~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGg 646 (997)
T KOG0334|consen 579 RSVVCKEVTQVVRVCAIENEKFLKLL-ELL--GERYEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGG 646 (997)
T ss_pred ceeEeccceEEEEEecCchHHHHHHH-HHH--HHHhhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCC
Confidence 221 1111111112 122222222 222 22233889999999999999999999865 7888889999
Q ss_pred CCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC
Q 003721 540 LPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG 619 (800)
Q Consensus 540 l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g 619 (800)
.++.+|..+++.|++|..++||||+++++|+|++++..||||++ |.-.+.|+||+||+||+|
T Consensus 647 v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgrag 708 (997)
T KOG0334|consen 647 VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAG 708 (997)
T ss_pred CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999 999999999999999999
Q ss_pred -CCeEEEccChHH
Q 003721 620 -PGKCYRLYTESA 631 (800)
Q Consensus 620 -~G~~~~L~t~~~ 631 (800)
.|.||.|.++++
T Consensus 709 rkg~AvtFi~p~q 721 (997)
T KOG0334|consen 709 RKGAAVTFITPDQ 721 (997)
T ss_pred ccceeEEEeChHH
Confidence 899999999854
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.5e-32 Score=322.36 Aligned_cols=306 Identities=18% Similarity=0.211 Sum_probs=216.6
Q ss_pred HHHHHhcCC--chHHHHHHHHHHHcC------CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHH
Q 003721 282 IQEQRRSLP--IFKLKNELIQAVHDN------QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKR 353 (800)
Q Consensus 282 ~~~~r~~lP--i~~~Q~~~i~~i~~~------~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~r 353 (800)
+......|| +++.|.++++.+.++ .+++++||||||||.++..+++.. ...+.++++++||++||.|+++.
T Consensus 251 ~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 251 LKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHHHHH
Confidence 344445454 789999999998776 379999999999999999888876 34577999999999999999999
Q ss_pred HHHHh---CCcccceeeeeee------cccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHH
Q 003721 354 VAEEF---GCRLGEEVGYAIR------FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGL 424 (800)
Q Consensus 354 v~~~~---g~~~g~~vg~~~~------~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~ 424 (800)
+.+.+ |..++..+|.... ..........|+++|++.+.. ...+.++++|||||+|... .. .
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg--~~----q 399 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFG--VE----Q 399 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhh--HH----H
Confidence 87765 4454444443221 011233468899999987743 2357899999999999422 11 1
Q ss_pred HHHHHhcCCCceEEEeccCCChHHHhhh-hcCCCcc---cCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCE
Q 003721 425 LKQLVKRRPDLRLIVTSATLDAERFSGY-FFNCNIF---SIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDI 500 (800)
Q Consensus 425 lk~l~~~~~~~kiI~lSATl~~~~~~~~-f~~~~~~---~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~i 500 (800)
...+.....+.++++||||+.+..+... ++...+. ..+....|+...+...... ...+..+.... ..+.++
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~--~~g~q~ 474 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI--AKGRQA 474 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH--HcCCcE
Confidence 2223333446789999999976654432 2222221 1222223455444433222 22223333222 236789
Q ss_pred EEEcCCHHH--------HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCC
Q 003721 501 LLFLTGQEE--------IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTI 572 (800)
Q Consensus 501 LVF~~s~~~--------i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdi 572 (800)
+||||..++ ++.+++.|.+. .+++.+..+||+|++++|+.+++.|++|+.+|||||+++++|||+
T Consensus 475 ~v~~~~ie~s~~l~~~~~~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 475 YVVCPLIEESEKLDLQSAEETYEELQEA-------FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred EEEEcccccccchhHHHHHHHHHHHHHH-------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 999996543 34444544433 234789999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCccceeecCCCCccccccccc-CHHhHHHHhcccCCCC-CCeEEEccC
Q 003721 573 DGIFYVIDPGFAKQNVYNPKQRLDSLVITPI-SQASALQRAGRAGRTG-PGKCYRLYT 628 (800)
Q Consensus 573 p~v~~VId~g~~k~~~yd~~~~~~~l~~~p~-S~~~~~QR~GRaGR~g-~G~~~~L~t 628 (800)
|++++||+++. |. +.+++.||+||+||.| +|.||.+++
T Consensus 548 p~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 548 PNATVMVIENA------------------ERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCCcEEEEeCC------------------CCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999998776 43 5688999999999999 899999996
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.3e-32 Score=336.95 Aligned_cols=295 Identities=21% Similarity=0.190 Sum_probs=202.5
Q ss_pred EEccCCCchHHHHHHHHHHhhccC------------CCeEEEecchHHHHHHHHHHHHHH----------h-----CCcc
Q 003721 310 LIGETGSGKTTQLAQYLAEAGYTT------------KGKIGCTQPRRVAATSVAKRVAEE----------F-----GCRL 362 (800)
Q Consensus 310 v~apTGSGKT~~~~~~lle~~~~~------------~~~il~~~P~r~la~qva~rv~~~----------~-----g~~~ 362 (800)
|++|||||||+++.+++++..+.. +.+++|+.|+|+|+.|+.+++... + +..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999888775532 358999999999999999887531 1 2333
Q ss_pred cceeeeeeeccc--ccCCCceEEEechHHHHHHHhcC--CCCCCCceEEEeccCcCCCCcc---hHHHHHHHHHhc-CCC
Q 003721 363 GEEVGYAIRFED--CTGPDTVIKYMTDGMLLREILID--ENLSQYSVIMLDEAHERTINTD---VLFGLLKQLVKR-RPD 434 (800)
Q Consensus 363 g~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~~~-~~~ 434 (800)
+...|.....+. .......|+++||+.|...+.+. ..++++++|||||+|+ ..++. .+...+.++... ..+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCCC
Confidence 333332221121 12245689999999998766443 3689999999999994 33332 244445555544 356
Q ss_pred ceEEEeccCCCh-HHHhhhhcCC-C--cccCCC-CccceeEEeccccchhh---------------H---H-HHHHHHHH
Q 003721 435 LRLIVTSATLDA-ERFSGYFFNC-N--IFSIPG-RTFPVDINYSRQEVTDY---------------L---D-SALITVLQ 490 (800)
Q Consensus 435 ~kiI~lSATl~~-~~~~~~f~~~-~--~~~i~g-~~~~v~~~~~~~~~~~~---------------~---~-~~l~~v~~ 490 (800)
.|+|++|||+.+ +.+.+|+.+. + ++..+. +..++.+.+......+. . . .....++.
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 899999999965 5667666543 2 222111 22333332211110000 0 0 01112222
Q ss_pred HhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhC------------------------CCCCCeEEEEEcCCCCHHHHH
Q 003721 491 IHVDEPEGDILLFLTGQEEIDFACESLCEKIKALG------------------------KDVPELVVLPVYSALPSEIQS 546 (800)
Q Consensus 491 i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~------------------------~~~~~~~v~~lh~~l~~~~R~ 546 (800)
... ...++||||||+..++.++..|.+...... ...+...+..|||+|+.++|.
T Consensus 240 ~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 240 EVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 357899999999999999999987532100 001123477899999999999
Q ss_pred hhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC--CCeEE
Q 003721 547 RIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG--PGKCY 624 (800)
Q Consensus 547 ~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g--~G~~~ 624 (800)
.+++.|++|.+++||||+++++||||++|++||++|. |.|.++|+||+|||||.. .+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCccEEE
Confidence 9999999999999999999999999999999999999 999999999999999975 34455
Q ss_pred E
Q 003721 625 R 625 (800)
Q Consensus 625 ~ 625 (800)
.
T Consensus 380 i 380 (1490)
T PRK09751 380 F 380 (1490)
T ss_pred E
Confidence 3
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1e-31 Score=317.40 Aligned_cols=309 Identities=16% Similarity=0.196 Sum_probs=214.3
Q ss_pred HHHHHhcCC--chHHHHHHHHHHHcC------CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHH
Q 003721 282 IQEQRRSLP--IFKLKNELIQAVHDN------QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKR 353 (800)
Q Consensus 282 ~~~~r~~lP--i~~~Q~~~i~~i~~~------~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~r 353 (800)
+.+....|| +++.|.++++.+.++ .+.+++||||||||.++..+++.. ...+.++++++||++||.|+++.
T Consensus 225 ~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~ 303 (630)
T TIGR00643 225 LTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNS 303 (630)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHH
Confidence 344555555 789999999998765 268999999999999998888876 44577999999999999999999
Q ss_pred HHHHh---CCcccceeeeeee------cccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHH
Q 003721 354 VAEEF---GCRLGEEVGYAIR------FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGL 424 (800)
Q Consensus 354 v~~~~---g~~~g~~vg~~~~------~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~ 424 (800)
+.+.+ |..++..+|.... ..........|+++|++.+.. ...+.++++|||||+|.... .....+
T Consensus 304 ~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~--~qr~~l 377 (630)
T TIGR00643 304 LRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGV--EQRKKL 377 (630)
T ss_pred HHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccH--HHHHHH
Confidence 88765 3444444442211 111223457899999997753 34578999999999994322 211111
Q ss_pred HHHHHhcCCCceEEEeccCCChHHHhhh-hcCCCc---ccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCE
Q 003721 425 LKQLVKRRPDLRLIVTSATLDAERFSGY-FFNCNI---FSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDI 500 (800)
Q Consensus 425 lk~l~~~~~~~kiI~lSATl~~~~~~~~-f~~~~~---~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~i 500 (800)
... .....+.++++||||+.+..+... +..... -..+....|+...+...... ...+..+.... ..+.++
T Consensus 378 ~~~-~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g~q~ 451 (630)
T TIGR00643 378 REK-GQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKGRQA 451 (630)
T ss_pred HHh-cccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhCCcE
Confidence 111 111126789999999876544432 222111 12222234555544433221 22222222221 235789
Q ss_pred EEEcCCHHH--------HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCC
Q 003721 501 LLFLTGQEE--------IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTI 572 (800)
Q Consensus 501 LVF~~s~~~--------i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdi 572 (800)
+|||+..++ ++.+++.|.+. .++..+..+||+|++++|..+++.|++|+.+|||||+++++|||+
T Consensus 452 ~v~~~~i~~s~~~~~~~a~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi 524 (630)
T TIGR00643 452 YVVYPLIEESEKLDLKAAEALYERLKKA-------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV 524 (630)
T ss_pred EEEEccccccccchHHHHHHHHHHHHhh-------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc
Confidence 999997643 44444444432 246789999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCccceeecCCCCcccccccc-cCHHhHHHHhcccCCCC-CCeEEEccC
Q 003721 573 DGIFYVIDPGFAKQNVYNPKQRLDSLVITP-ISQASALQRAGRAGRTG-PGKCYRLYT 628 (800)
Q Consensus 573 p~v~~VId~g~~k~~~yd~~~~~~~l~~~p-~S~~~~~QR~GRaGR~g-~G~~~~L~t 628 (800)
|++++||+++. | .+.+++.||+||+||.| +|.||.++.
T Consensus 525 P~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 525 PNATVMVIEDA------------------ERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCCcEEEEeCC------------------CcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999997776 3 36789999999999999 899999983
No 62
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=283.65 Aligned_cols=313 Identities=21% Similarity=0.243 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHcC--CeEEEEccCCCchHHHHHHHHHHhhcc--CCCeEEEecchHHHHHHHHHHHHHHhCCcccceeee
Q 003721 293 KLKNELIQAVHDN--QVLILIGETGSGKTTQLAQYLAEAGYT--TKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGY 368 (800)
Q Consensus 293 ~~Q~~~i~~i~~~--~~viv~apTGSGKT~~~~~~lle~~~~--~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~ 368 (800)
.+|+.+++.++.+ +++|..+..|+|||++|.+.++...-. ..+..+|++|+|+||.|..+-+ +++|...+....|
T Consensus 115 kIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~y 193 (477)
T KOG0332|consen 115 KIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTASY 193 (477)
T ss_pred hHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEEE
Confidence 5689999998764 699999999999999999998876322 2447899999999999988766 6777766667778
Q ss_pred eeecccccC---CCceEEEechHHHHHHHhc--CCCCCCCceEEEeccCcCCCCcc-hHHHHHHHHHhcCCCceEEEecc
Q 003721 369 AIRFEDCTG---PDTVIKYMTDGMLLREILI--DENLSQYSVIMLDEAHERTINTD-VLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 369 ~~~~~~~~~---~~~~I~~~T~g~Ll~~l~~--~~~l~~~~~IIiDEaHer~~~~d-~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
.++...... -...|++.|||.+++++.. ...+..+.++|+|||+ .++++. +--..++......++.+++++||
T Consensus 194 air~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSA 272 (477)
T KOG0332|consen 194 AIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSA 272 (477)
T ss_pred EecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeec
Confidence 887764332 2467899999999998854 4468899999999999 566665 33333444444446999999999
Q ss_pred CCCh--HHHhhhhc-CCCcccCCCCc---cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 443 TLDA--ERFSGYFF-NCNIFSIPGRT---FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 443 Tl~~--~~~~~~f~-~~~~~~i~g~~---~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
|... ..|+..+. +...+.+..+. +++...|..-+.. +.+...+.++.....-|+.||||.+++.+..++..
T Consensus 273 Tf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~---~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~ 349 (477)
T KOG0332|consen 273 TFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR---DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEE 349 (477)
T ss_pred hhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch---hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHH
Confidence 9964 45655543 33333333322 4444455444333 34445555555444568899999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
+.+. +..|..+||.|.-++|..+.+.|+.|.-+|||+||+.+||||++.|.+||||++ ...|+.
T Consensus 350 m~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydl--P~~~~~----- 413 (477)
T KOG0332|consen 350 MRAE---------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDL--PVKYTG----- 413 (477)
T ss_pred HHhc---------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCC--ccccCC-----
Confidence 8876 889999999999999999999999999999999999999999999999999999 111111
Q ss_pred cccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 597 SLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
--+.+.|+||+||+||.| .|.++.|.....
T Consensus 414 -----~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 414 -----EPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred -----CCCHHHHHHHhcccccccccceEEEeecccC
Confidence 246799999999999999 899999887543
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.98 E-value=3e-31 Score=294.58 Aligned_cols=291 Identities=21% Similarity=0.210 Sum_probs=193.4
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeee------e-----ccc
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAI------R-----FED 374 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~------~-----~~~ 374 (800)
+++|+||||||||+++.+++++.... .+++++|++|+++|+.|+++++.+.++..+|...|... . .+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 58999999999999999999876432 35699999999999999999999988765553333111 0 000
Q ss_pred ------c---cCCCceEEEechHHHHHHHhcCCC-------CCCCceEEEeccCcCCCCc--chHHHHHHHHHhcCCCce
Q 003721 375 ------C---TGPDTVIKYMTDGMLLREILIDEN-------LSQYSVIMLDEAHERTINT--DVLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 375 ------~---~~~~~~I~~~T~g~Ll~~l~~~~~-------l~~~~~IIiDEaHer~~~~--d~l~~~lk~l~~~~~~~k 436 (800)
. ......|+++|++.++..+..... .-..++||+||+|. .... +++..+++.+. ..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHF-YDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCC-CCHHHHHHHHHHHHHHH--HcCCC
Confidence 0 012356899999999887654210 12348999999994 3332 23444444443 35789
Q ss_pred EEEeccCCChHHHhhhhcCCCccc----CCCCccc-e-eEEec-cccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 003721 437 LIVTSATLDAERFSGYFFNCNIFS----IPGRTFP-V-DINYS-RQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEE 509 (800)
Q Consensus 437 iI~lSATl~~~~~~~~f~~~~~~~----i~g~~~~-v-~~~~~-~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~ 509 (800)
+++||||++. .+..++....... .+..... . ...+. ...........+..++... ..++++||||+++++
T Consensus 158 ~i~~SATlp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 158 ILLMSATLPK-FLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDR 234 (358)
T ss_pred EEEEecCchH-HHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCHHH
Confidence 9999999983 3444443221111 1100000 0 00000 0000001112222222222 236789999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhh----cCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCcc
Q 003721 510 IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRI----FEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAK 585 (800)
Q Consensus 510 i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i----~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k 585 (800)
++.+++.|.+.. +...+..+||++++.+|.++ ++.|++|..+|||||+++++|+|+| +++||++..
T Consensus 235 ~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~-- 304 (358)
T TIGR01587 235 AQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA-- 304 (358)
T ss_pred HHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC--
Confidence 999999987752 13468999999999999764 8899999999999999999999997 677775433
Q ss_pred ceeecCCCCcccccccccCHHhHHHHhcccCCCC--C---CeEEEccChHH
Q 003721 586 QNVYNPKQRLDSLVITPISQASALQRAGRAGRTG--P---GKCYRLYTESA 631 (800)
Q Consensus 586 ~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g--~---G~~~~L~t~~~ 631 (800)
+.++|+||+||+||.| . |..|.++...+
T Consensus 305 ------------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 305 ------------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred ------------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 4689999999999988 2 37777776543
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.98 E-value=3.4e-31 Score=310.48 Aligned_cols=302 Identities=18% Similarity=0.171 Sum_probs=192.8
Q ss_pred chHHHHHHHHHHHcCC-eEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchHHHHHHHHHHHHHHhC--------
Q 003721 291 IFKLKNELIQAVHDNQ-VLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRRVAATSVAKRVAEEFG-------- 359 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~-~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r~la~qva~rv~~~~g-------- 359 (800)
.+++|.++++.+.+|+ ++++.+|||||||.++..+++...... ..++++++|||+||.|+++.+.+...
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~ 95 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEV 95 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchh
Confidence 6789999999999998 677789999999987665555321111 22677788999999999987654321
Q ss_pred ------------------Ccccceeeeeee-cc-cccCCCceEEEechHHHHHHHhcC-------------CCCCCCceE
Q 003721 360 ------------------CRLGEEVGYAIR-FE-DCTGPDTVIKYMTDGMLLREILID-------------ENLSQYSVI 406 (800)
Q Consensus 360 ------------------~~~g~~vg~~~~-~~-~~~~~~~~I~~~T~g~Ll~~l~~~-------------~~l~~~~~I 406 (800)
+.+...+|.... .+ ........|+++|..++.+..+.. ..+.+.++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~L 175 (844)
T TIGR02621 96 EAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALI 175 (844)
T ss_pred hhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEE
Confidence 111111221100 00 111245689999976665544320 126889999
Q ss_pred EEeccCcCCCCcchHHHHHHHHHhc--CC---CceEEEeccCCChH--HHhhhhcCCCc-ccCCCCccc--eeEEecccc
Q 003721 407 MLDEAHERTINTDVLFGLLKQLVKR--RP---DLRLIVTSATLDAE--RFSGYFFNCNI-FSIPGRTFP--VDINYSRQE 476 (800)
Q Consensus 407 IiDEaHer~~~~d~l~~~lk~l~~~--~~---~~kiI~lSATl~~~--~~~~~f~~~~~-~~i~g~~~~--v~~~~~~~~ 476 (800)
|||||| ++++|...+...+... .+ ++|+++||||++.+ .+...+...+. +.+...... -...+....
T Consensus 176 VLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~ 252 (844)
T TIGR02621 176 VHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPS 252 (844)
T ss_pred EEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecC
Confidence 999999 4455544433333321 22 36999999999753 33334443332 111111111 011222222
Q ss_pred chhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHH-----hhcCc
Q 003721 477 VTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQS-----RIFEP 551 (800)
Q Consensus 477 ~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~-----~i~~~ 551 (800)
....+...+..+..+. ...++++||||||++.++.+++.|.+. ++ ..+||.|++.+|. .+++.
T Consensus 253 ~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 253 DEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred hHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 2222222333333322 344678999999999999999999754 33 7899999999999 77888
Q ss_pred CCC----CC-------ceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCC
Q 003721 552 APP----GG-------RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGP 620 (800)
Q Consensus 552 f~~----g~-------~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~ 620 (800)
|++ |. .+|||||+++++||||+. ++||+... | .++|+||+||+||.|.
T Consensus 321 Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a------------------P--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 321 FLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA------------------P--FESMQQRFGRVNRFGE 379 (844)
T ss_pred HhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC------------------C--HHHHHHHhcccCCCCC
Confidence 876 44 689999999999999997 67775333 4 5899999999999993
Q ss_pred --CeEEEccC
Q 003721 621 --GKCYRLYT 628 (800)
Q Consensus 621 --G~~~~L~t 628 (800)
|..+.+++
T Consensus 380 ~~~~~i~vv~ 389 (844)
T TIGR02621 380 LQACQIAVVH 389 (844)
T ss_pred CCCceEEEEe
Confidence 33344443
No 65
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.5e-31 Score=278.37 Aligned_cols=308 Identities=18% Similarity=0.173 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--------CCeEEEecchHHHHHHHHHHHHHHh---CCc
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--------KGKIGCTQPRRVAATSVAKRVAEEF---GCR 361 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--------~~~il~~~P~r~la~qva~rv~~~~---g~~ 361 (800)
-+|+.+|+.+++|++++.-|.||||||.++.+|+++..+.. +...++++|||+||.|+++.+.+.. +..
T Consensus 44 lIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~ 123 (569)
T KOG0346|consen 44 LIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKD 123 (569)
T ss_pred hhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999876542 3378899999999999998776532 111
Q ss_pred ccceeeeeeecc-----cccCCCceEEEechHHHHHHHhcCC--CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCC
Q 003721 362 LGEEVGYAIRFE-----DCTGPDTVIKYMTDGMLLREILIDE--NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPD 434 (800)
Q Consensus 362 ~g~~vg~~~~~~-----~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~ 434 (800)
+ ..+....... ........|+++||+.+++.+..+. .+..++++|+|||+ -.+.-++-..+.+......+.
T Consensus 124 l-r~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LPr~ 201 (569)
T KOG0346|consen 124 L-RAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLPRI 201 (569)
T ss_pred h-hhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHHHHHHHHhCCch
Confidence 0 0000000000 1123567899999999999997776 48899999999999 455555555555555555678
Q ss_pred ceEEEeccCCCh--HHHhhhhcCCCcc-cCCCCcc----ceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 003721 435 LRLIVTSATLDA--ERFSGYFFNCNIF-SIPGRTF----PVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQ 507 (800)
Q Consensus 435 ~kiI~lSATl~~--~~~~~~f~~~~~~-~i~g~~~----~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~ 507 (800)
.|.++||||++. ..+...|...|++ ....... .+..++..-...+.. ..+-.++. ..--.|++|||+|+.
T Consensus 202 ~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKf-lllyallK--L~LI~gKsliFVNtI 278 (569)
T KOG0346|consen 202 YQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKF-LLLYALLK--LRLIRGKSLIFVNTI 278 (569)
T ss_pred hhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhH-HHHHHHHH--HHHhcCceEEEEech
Confidence 899999999964 5778888887764 2222111 222233222222211 11111222 223378999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccc----------------------
Q 003721 508 EEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNI---------------------- 565 (800)
Q Consensus 508 ~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~i---------------------- 565 (800)
+.+..+.-.|.+. ++..+.+.|.||...|-.|++.|..|..+|||||+.
T Consensus 279 dr~YrLkLfLeqF---------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kn 349 (569)
T KOG0346|consen 279 DRCYRLKLFLEQF---------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKN 349 (569)
T ss_pred hhhHHHHHHHHHh---------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCC
Confidence 9999998888776 788899999999999999999999999999999992
Q ss_pred -------------hhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 566 -------------AEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 566 -------------ae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
..+|||+..|..|||+++ |.+..+|+||+||++|.+ +|.+..|..+..
T Consensus 350 dkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------------------P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 350 DKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------------------PETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred ccccccccCchhchhccccchheeeeeecCC------------------CCchHHHHHhccccccCCCCCceEEEecchH
Confidence 358999999999999999 999999999999999999 899999988765
Q ss_pred h
Q 003721 632 Y 632 (800)
Q Consensus 632 ~ 632 (800)
.
T Consensus 412 ~ 412 (569)
T KOG0346|consen 412 E 412 (569)
T ss_pred H
Confidence 4
No 66
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=7.8e-30 Score=295.15 Aligned_cols=440 Identities=18% Similarity=0.220 Sum_probs=296.2
Q ss_pred CCCcchHHHhhhcCCCCcCcCChhHHHHHHhcCCchHHHHHHHHHHH-cCCeEEEEccCCCchHHHHHHHHHHhhccC--
Q 003721 257 ARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVH-DNQVLILIGETGSGKTTQLAQYLAEAGYTT-- 333 (800)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~-~~~~viv~apTGSGKT~~~~~~lle~~~~~-- 333 (800)
-..+|+|.+.||....+ +..+|..+..+.. ...++++|||||+|||-.+.+-+++..-..
T Consensus 293 iselP~Wnq~aF~g~~s-----------------LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r 355 (1674)
T KOG0951|consen 293 ISELPKWNQPAFFGKQS-----------------LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLR 355 (1674)
T ss_pred ecCCcchhhhhcccchh-----------------hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccc
Confidence 44589999988843222 3456888888754 456999999999999999988888763222
Q ss_pred --------CCeEEEecchHHHHHHHHHHHHHHh---CCcccceeeeeeecccccCCCceEEEechHHH---HHHHhcCCC
Q 003721 334 --------KGKIGCTQPRRVAATSVAKRVAEEF---GCRLGEEVGYAIRFEDCTGPDTVIKYMTDGML---LREILIDEN 399 (800)
Q Consensus 334 --------~~~il~~~P~r~la~qva~rv~~~~---g~~~g~~vg~~~~~~~~~~~~~~I~~~T~g~L---l~~l~~~~~ 399 (800)
..+|+|++|.++|+.++...+++.+ |+.++..+|...... ..-..|.++++||+-. .|.--.+..
T Consensus 356 ~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~-~qieeTqVIV~TPEK~DiITRk~gdraY 434 (1674)
T KOG0951|consen 356 EDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGK-EQIEETQVIVTTPEKWDIITRKSGDRAY 434 (1674)
T ss_pred cccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchh-hhhhcceeEEeccchhhhhhcccCchhH
Confidence 2389999999999999998887754 666666555322111 1235789999999854 222111223
Q ss_pred CCCCceEEEeccCcCCCCcc---hHHHHHHHHHh----cCCCceEEEeccCCChHHHhhhhcCCC-----cccCCCCccc
Q 003721 400 LSQYSVIMLDEAHERTINTD---VLFGLLKQLVK----RRPDLRLIVTSATLDAERFSGYFFNCN-----IFSIPGRTFP 467 (800)
Q Consensus 400 l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~~----~~~~~kiI~lSATl~~~~~~~~f~~~~-----~~~i~g~~~~ 467 (800)
.+-++++||||+| +++.+ .+..+..+... .....+++++|||+|+-.-...|+.++ .+....|+.|
T Consensus 435 ~qlvrLlIIDEIH--LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvP 512 (1674)
T KOG0951|consen 435 EQLVRLLIIDEIH--LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVP 512 (1674)
T ss_pred HHHHHHHhhhhhh--hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCC
Confidence 5668999999999 55333 44444443332 245789999999998754444444433 2334567788
Q ss_pred eeEEeccccchhhHHH-------HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHH----------HhhC-----
Q 003721 468 VDINYSRQEVTDYLDS-------ALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKI----------KALG----- 525 (800)
Q Consensus 468 v~~~~~~~~~~~~~~~-------~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l----------~~~~----- 525 (800)
+...|........... ....++ .....+++|||+.+++++-.+|+.++..+ +.-.
T Consensus 513 L~qq~Igi~ek~~~~~~qamNe~~yeKVm---~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ei 589 (1674)
T KOG0951|consen 513 LKQQYIGITEKKPLKRFQAMNEACYEKVL---EHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREI 589 (1674)
T ss_pred ccceEeccccCCchHHHHHHHHHHHHHHH---HhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhh
Confidence 8877776544332222 222222 23345899999999999999999988432 1100
Q ss_pred -------------CCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCC
Q 003721 526 -------------KDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPK 592 (800)
Q Consensus 526 -------------~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~ 592 (800)
.+.-++.++.||+||+..+|..+++.|+.|.++|+|+|.++++|+|+|+-+++| ....+|||.
T Consensus 590 lrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pe 665 (1674)
T KOG0951|consen 590 LRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPE 665 (1674)
T ss_pred hhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcc
Confidence 012246788999999999999999999999999999999999999999999999 888999999
Q ss_pred CCcccccccccCHHhHHHHhcccCCCC-----CCeEEEccChHHhhhhCCCCCCc--chhccCchhHHHHHHHcCCCC--
Q 003721 593 QRLDSLVITPISQASALQRAGRAGRTG-----PGKCYRLYTESAYRSEMSPTTIP--EIQRINLVHTTLTMKAMGINN-- 663 (800)
Q Consensus 593 ~~~~~l~~~p~S~~~~~QR~GRaGR~g-----~G~~~~L~t~~~~~~~~~~~~~p--ei~r~~L~~~~L~lk~~~i~~-- 663 (800)
.|. ..+.|+.+.+||.|||||.+ .|+.+.=+++-.|+-.+.....| +-....|...+-.-..+|+..
T Consensus 666 kg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~ 741 (1674)
T KOG0951|consen 666 KGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSAR 741 (1674)
T ss_pred cCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHH
Confidence 885 44899999999999999998 34555545554444333333222 221122222111112233221
Q ss_pred ----cccccC-----CCCCCh-----------------HHHHHHHHHHHHcCCcccC---C--ccchhhhhhhcCCCChH
Q 003721 664 ----LLSFDF-----VDPPSP-----------------QALISAMEQLYSLGALDEE---G--LLTKLGKKMAEFPLDPP 712 (800)
Q Consensus 664 ----~~~f~~-----~~~p~~-----------------~~i~~al~~L~~lgald~~---g--~lT~lG~~~~~~pl~p~ 712 (800)
.+.++| +..|.. +.+.+|.-.|...|.|--+ | ..|.+|+..+.+++.-.
T Consensus 742 d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~ 821 (1674)
T KOG0951|consen 742 DAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHG 821 (1674)
T ss_pred HHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecc
Confidence 111111 111111 3467788888888888433 3 57999999999999888
Q ss_pred HHHHHHHHhhcCCHH
Q 003721 713 LSKMLLASVDLGCSD 727 (800)
Q Consensus 713 ~~k~l~~~~~~~c~~ 727 (800)
.+...-..+.-.|.+
T Consensus 822 s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 822 SMATYNELLKETMSE 836 (1674)
T ss_pred hHHHHHhhhhhhhcc
Confidence 777777666665654
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=6.7e-30 Score=276.11 Aligned_cols=315 Identities=19% Similarity=0.199 Sum_probs=221.7
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeee--
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYA-- 369 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~-- 369 (800)
..||..+....+.+ +++++.|||-|||+.+...+.......++++++++||+-|+.|.+..+.+.+|.+....+..+
T Consensus 17 R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGe 95 (542)
T COG1111 17 RLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGE 95 (542)
T ss_pred HHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCC
Confidence 45788887776665 899999999999999988888776666669999999999999999999999987665433221
Q ss_pred eecccc--cCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 370 IRFEDC--TGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 370 ~~~~~~--~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
++.+.. .-...+|+++||+.+.+-+.... ++.+++++|+|||| |......+..+.+.......++.+++||||+.+
T Consensus 96 v~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs 174 (542)
T COG1111 96 VRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTASPGS 174 (542)
T ss_pred CChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecCCCC
Confidence 111111 11356899999999988886554 69999999999999 888777777788888887888899999999953
Q ss_pred --HHHhhhhcCCCcccC----CC----Cc--cceeEEecc----------------------------------------
Q 003721 447 --ERFSGYFFNCNIFSI----PG----RT--FPVDINYSR---------------------------------------- 474 (800)
Q Consensus 447 --~~~~~~f~~~~~~~i----~g----~~--~~v~~~~~~---------------------------------------- 474 (800)
+++.....+-.+-.+ .. ++ ..+++.+.+
T Consensus 175 ~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~k 254 (542)
T COG1111 175 DLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKK 254 (542)
T ss_pred CHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHh
Confidence 333332221110000 00 00 000000000
Q ss_pred --------------ccch-------------------------------hhHH------------------------HH-
Q 003721 475 --------------QEVT-------------------------------DYLD------------------------SA- 484 (800)
Q Consensus 475 --------------~~~~-------------------------------~~~~------------------------~~- 484 (800)
.... .|+. .+
T Consensus 255 dl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al 334 (542)
T COG1111 255 DLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRAL 334 (542)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHH
Confidence 0000 0000 00
Q ss_pred ---------------HHHHH----HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEE----EEEcCCCC
Q 003721 485 ---------------LITVL----QIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVV----LPVYSALP 541 (800)
Q Consensus 485 ---------------l~~v~----~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v----~~lh~~l~ 541 (800)
+..+. ......+..++|||++-++.++.+...|.+. +....-.-+ .-...||+
T Consensus 335 ~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~----~~~~~~rFiGQa~r~~~~GMs 410 (542)
T COG1111 335 RLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI----GIKARVRFIGQASREGDKGMS 410 (542)
T ss_pred HHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc----CCcceeEEeeccccccccccC
Confidence 00111 1111233567999999999999998888664 222110001 11236899
Q ss_pred HHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCC
Q 003721 542 SEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPG 621 (800)
Q Consensus 542 ~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G 621 (800)
+.+|.++++.|++|..+|||||+++|.|+|||++++||-|.. --|..-++||.||+||..+|
T Consensus 411 QkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEp------------------vpSeIR~IQR~GRTGR~r~G 472 (542)
T COG1111 411 QKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEP------------------VPSEIRSIQRKGRTGRKRKG 472 (542)
T ss_pred HHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecC------------------CcHHHHHHHhhCccccCCCC
Confidence 999999999999999999999999999999999999995555 56788999999999999999
Q ss_pred eEEEccChH
Q 003721 622 KCYRLYTES 630 (800)
Q Consensus 622 ~~~~L~t~~ 630 (800)
..|.|.++.
T Consensus 473 rv~vLvt~g 481 (542)
T COG1111 473 RVVVLVTEG 481 (542)
T ss_pred eEEEEEecC
Confidence 999999976
No 68
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.5e-31 Score=287.98 Aligned_cols=317 Identities=18% Similarity=0.194 Sum_probs=230.0
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-------CCeEEEecchHHHHHHHHHHHHHHh
Q 003721 286 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-------KGKIGCTQPRRVAATSVAKRVAEEF 358 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-------~~~il~~~P~r~la~qva~rv~~~~ 358 (800)
..+.|+ |.++++.+..+++++.|||||||||+++..+++..+... +-+++++.|+|+||.|++....+.-
T Consensus 157 ~~Pt~i---q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 157 DEPTPI---QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCCcc---cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 445555 899999999999999999999999999999998875432 2488999999999999998876543
Q ss_pred --CCcccceee--eeee----cccccCCCceEEEechHHHHHHHhcCC---CCCCCceEEEeccCcCCCCc-chHHHHHH
Q 003721 359 --GCRLGEEVG--YAIR----FEDCTGPDTVIKYMTDGMLLREILIDE---NLSQYSVIMLDEAHERTINT-DVLFGLLK 426 (800)
Q Consensus 359 --g~~~g~~vg--~~~~----~~~~~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~~~~-d~l~~~lk 426 (800)
...-....+ |... .........++.+.||-.+...+...+ .+..+.++|+||++ +.+.. .|..++-.
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHH
Confidence 100011111 1110 111112356788999999888886654 68999999999999 66666 34333333
Q ss_pred HHHh-cCCCceEEEeccCCCh--HHHhhhhcCCCcccCCCCccceeEEeccc-cchhhHHHHHHHHHHHhhcCCCCCEEE
Q 003721 427 QLVK-RRPDLRLIVTSATLDA--ERFSGYFFNCNIFSIPGRTFPVDINYSRQ-EVTDYLDSALITVLQIHVDEPEGDILL 502 (800)
Q Consensus 427 ~l~~-~~~~~kiI~lSATl~~--~~~~~~f~~~~~~~i~g~~~~v~~~~~~~-~~~~~~~~~l~~v~~i~~~~~~g~iLV 502 (800)
.+.. ..|++++-++|||.+. +.++......++..+-|..........+. .-......++..+.++....-..++||
T Consensus 313 I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lI 392 (593)
T KOG0344|consen 313 IYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLI 392 (593)
T ss_pred HHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEE
Confidence 3322 2478899999999975 45555444333322222211110000000 000011233444555555556778999
Q ss_pred EcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCC
Q 003721 503 FLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPG 582 (800)
Q Consensus 503 F~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g 582 (800)
|+.+.+.+..+...|.. .+++.+..+||..++.+|...++.|+.|+++|++||+++++|+|+-+|+.||||+
T Consensus 393 fVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD 464 (593)
T KOG0344|consen 393 FVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYD 464 (593)
T ss_pred EEecHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecC
Confidence 99999999998887751 2478899999999999999999999999999999999999999999999999999
Q ss_pred CccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 583 FAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 583 ~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
+ |.|..+|+||+||+||.| .|++|.|||..+.
T Consensus 465 ~------------------p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 465 F------------------PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred C------------------CchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 9 999999999999999999 8999999998654
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=4e-29 Score=276.10 Aligned_cols=285 Identities=15% Similarity=0.175 Sum_probs=187.9
Q ss_pred HHHHHHHHHHcCC--eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhC-------Ccccc
Q 003721 294 LKNELIQAVHDNQ--VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFG-------CRLGE 364 (800)
Q Consensus 294 ~Q~~~i~~i~~~~--~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g-------~~~g~ 364 (800)
+|.++++++.+++ +++++||||||||.++..+++.. +.+++++.|+++|+.++++++.+.+. ..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 5899999998776 48899999999999998887753 45789999999999999999877652 22222
Q ss_pred eeeeeee----cc------------------cccCCCceEEEechHHHHHHHh---cCC------CCCCCceEEEeccCc
Q 003721 365 EVGYAIR----FE------------------DCTGPDTVIKYMTDGMLLREIL---IDE------NLSQYSVIMLDEAHE 413 (800)
Q Consensus 365 ~vg~~~~----~~------------------~~~~~~~~I~~~T~g~Ll~~l~---~~~------~l~~~~~IIiDEaHe 413 (800)
..|.... .. ........|+++||+++...+. ..+ .+.++++||+||+|.
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 2221000 00 0001245567777777754332 112 258899999999997
Q ss_pred CCCCcc-hH---HHHHHHHHhcCCCceEEEeccCCChHH---Hhhh-hcCCCcccCCCCc--------------------
Q 003721 414 RTINTD-VL---FGLLKQLVKRRPDLRLIVTSATLDAER---FSGY-FFNCNIFSIPGRT-------------------- 465 (800)
Q Consensus 414 r~~~~d-~l---~~~lk~l~~~~~~~kiI~lSATl~~~~---~~~~-f~~~~~~~i~g~~-------------------- 465 (800)
...... .+ +.....+.......++++||||++... +... +.+.++..+.|+.
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRP 236 (357)
T ss_pred cCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccce
Confidence 554332 11 233332222233579999999998652 2221 1344555555551
Q ss_pred --cceeEEecccc--chhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCC
Q 003721 466 --FPVDINYSRQE--VTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALP 541 (800)
Q Consensus 466 --~~v~~~~~~~~--~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~ 541 (800)
.+++..+.... ....+......+.+......++++||||+++..++.++..|.+. + .+..+..+||.++
T Consensus 237 ~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~----~---~~~~~~~l~g~~~ 309 (357)
T TIGR03158 237 VLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ----G---LGDDIGRITGFAP 309 (357)
T ss_pred eccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh----C---CCceEEeeecCCC
Confidence 13444333311 11122223333333333345678999999999999999999764 1 1356788999999
Q ss_pred HHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccC
Q 003721 542 SEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAG 616 (800)
Q Consensus 542 ~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaG 616 (800)
+.+|.++. +..|||||+++++|||+|.+ +||. - |.+.++|+||+||+|
T Consensus 310 ~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~--~------------------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 310 KKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF--S------------------ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE--C------------------CCCHHHHhhhcccCC
Confidence 99998763 67899999999999999987 4441 1 678899999999998
No 70
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=5.4e-30 Score=279.93 Aligned_cols=310 Identities=18% Similarity=0.223 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchHHHHHHHHHHHHHHh----CCccccee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRRVAATSVAKRVAEEF----GCRLGEEV 366 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r~la~qva~rv~~~~----g~~~g~~v 366 (800)
++|..+|+++..+-++||.+..|+|||+++....++..-.. ...+++++|||++|.|+...+.... |.++...+
T Consensus 50 kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 50 KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 56999999999999999999999999988877777653322 3478999999999999998876543 45555555
Q ss_pred eeee-ecccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccC
Q 003721 367 GYAI-RFEDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSAT 443 (800)
Q Consensus 367 g~~~-~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSAT 443 (800)
|.+- ..+...-..++|+++|||++......+. +.++++++|+|||+ ..+++..+..-+..+... ....|++++|||
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SAT 208 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSAT 208 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEecc
Confidence 5432 2233334678999999999999886554 58999999999999 577777666666666544 456789999999
Q ss_pred CCh---HHHhhhhcCCCcccCCCCc---cceeEEeccccch----hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHH
Q 003721 444 LDA---ERFSGYFFNCNIFSIPGRT---FPVDINYSRQEVT----DYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFA 513 (800)
Q Consensus 444 l~~---~~~~~~f~~~~~~~i~g~~---~~v~~~~~~~~~~----~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l 513 (800)
.+. +.++.|..+.-.+....+. +-+..++...+.. ..+..++..+-++...-+-.+.||||+....|+.+
T Consensus 209 Yp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~ 288 (980)
T KOG4284|consen 209 YPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPI 288 (980)
T ss_pred CchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHH
Confidence 984 3555555444444443322 2223233222211 23344566666777777778899999999999999
Q ss_pred HHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCC
Q 003721 514 CESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ 593 (800)
Q Consensus 514 ~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~ 593 (800)
+..|... ++.+.++.|.|++.+|..+++.++.-..+|||+|+..++|||-|.|+.|||.+.
T Consensus 289 a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~---------- 349 (980)
T KOG4284|consen 289 ATHLKSS---------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA---------- 349 (980)
T ss_pred HHHhhcc---------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCC----------
Confidence 9998765 899999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHHhHHHHhcccCCCC-CCeEEEccChH
Q 003721 594 RLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTES 630 (800)
Q Consensus 594 ~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~ 630 (800)
|.+-..|.||+|||||.| .|.+++|+...
T Consensus 350 --------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 350 --------PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred --------CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 999999999999999999 89999888744
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=9.3e-29 Score=285.15 Aligned_cols=296 Identities=16% Similarity=0.114 Sum_probs=200.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeee
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGY 368 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~ 368 (800)
..++++|.++++.+..+++.++++|||||||..+...+....-...++++|++|+++|+.|+.+++.+..........+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 56788999999999999999999999999998765433222112234999999999999999999876543221111111
Q ss_pred eeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChHH
Q 003721 369 AIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAER 448 (800)
Q Consensus 369 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~ 448 (800)
.. .........|+++|++.+.+.. ..++.++++||+|||| +... ..+..+++.+ .+..+++++|||+....
T Consensus 193 -~~-g~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH-~~~~-~~~~~il~~~---~~~~~~lGLTATp~~~~ 263 (501)
T PHA02558 193 -YS-GTAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECH-LFTG-KSLTSIITKL---DNCKFKFGLTGSLRDGK 263 (501)
T ss_pred -ec-CcccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchh-cccc-hhHHHHHHhh---hccceEEEEeccCCCcc
Confidence 00 1111234679999999987643 2357899999999999 3333 2333333332 23456899999996421
Q ss_pred -----HhhhhcCCCcccC-------CCCccceeE-----Eeccc-----cchhhH------------HHHHHHHHHHhhc
Q 003721 449 -----FSGYFFNCNIFSI-------PGRTFPVDI-----NYSRQ-----EVTDYL------------DSALITVLQIHVD 494 (800)
Q Consensus 449 -----~~~~f~~~~~~~i-------~g~~~~v~~-----~~~~~-----~~~~~~------------~~~l~~v~~i~~~ 494 (800)
+..+|+.. ...+ .|...++.+ .+... ...+|. ...+..+.....
T Consensus 264 ~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~- 341 (501)
T PHA02558 264 ANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA- 341 (501)
T ss_pred ccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-
Confidence 22334321 1000 011111111 11100 000110 011111111112
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEec-cchhhcCCCC
Q 003721 495 EPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVAT-NIAEASLTID 573 (800)
Q Consensus 495 ~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT-~iae~GIdip 573 (800)
..++++|||+++.++++.+++.|.+. +..+..+||+++.++|..+++.|++|...||||| +++++|+|+|
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 34567999999999999999988775 6789999999999999999999999999999998 8999999999
Q ss_pred CeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCe
Q 003721 574 GIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGK 622 (800)
Q Consensus 574 ~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~ 622 (800)
++++||.... +.|...|+||+||+||.++|+
T Consensus 413 ~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 413 NLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 9999996666 888999999999999999664
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=295.64 Aligned_cols=324 Identities=22% Similarity=0.224 Sum_probs=229.8
Q ss_pred HHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCC-CeEEEecchHHHHHHHHHHHHHHhCCcc-
Q 003721 285 QRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTK-GKIGCTQPRRVAATSVAKRVAEEFGCRL- 362 (800)
Q Consensus 285 ~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~-~~il~~~P~r~la~qva~rv~~~~g~~~- 362 (800)
.+....+|+||.+++..+.+++++||+.+||||||.++.++++++.+... .+.+++.|+++||+++++++.+......
T Consensus 65 ~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 65 KAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred HhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 34445599999999999999999999999999999999999999876543 3789999999999999999877653221
Q ss_pred ----cceeeeeeecc--cccCCCceEEEechHHHHHHHhcCC-----CCCCCceEEEeccCc-CCCCcchHHHHHHHHHh
Q 003721 363 ----GEEVGYAIRFE--DCTGPDTVIKYMTDGMLLREILIDE-----NLSQYSVIMLDEAHE-RTINTDVLFGLLKQLVK 430 (800)
Q Consensus 363 ----g~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~~-----~l~~~~~IIiDEaHe-r~~~~d~l~~~lk~l~~ 430 (800)
+...|-.-..+ .......+|++++|.||-..++... .+.++++||+||+|- |+....-+..+++++..
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~ 224 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLR 224 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHH
Confidence 11112111111 1124678899999999987665432 278899999999994 22222223334444443
Q ss_pred c----CCCceEEEeccCCC-hHHHhhhhcCCCccc-CCCC--ccceeEEeccccch--------hhHHHHHHHHHHHhhc
Q 003721 431 R----RPDLRLIVTSATLD-AERFSGYFFNCNIFS-IPGR--TFPVDINYSRQEVT--------DYLDSALITVLQIHVD 494 (800)
Q Consensus 431 ~----~~~~kiI~lSATl~-~~~~~~~f~~~~~~~-i~g~--~~~v~~~~~~~~~~--------~~~~~~l~~v~~i~~~ 494 (800)
+ ..++++|.+|||+. +..+...+.+..... +.+. +-.....+...+.. .........+.....
T Consensus 225 ~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~- 303 (851)
T COG1205 225 RLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLV- 303 (851)
T ss_pred HHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHH-
Confidence 3 34789999999994 455555555443322 3332 22222222222200 011111222222222
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCC
Q 003721 495 EPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDG 574 (800)
Q Consensus 495 ~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~ 574 (800)
..+-++|+|+.++..++.++....+.+...+ ..-...+..++|++..++|.+++..|+.|+..++++||+++.||||.+
T Consensus 304 ~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ 382 (851)
T COG1205 304 RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGS 382 (851)
T ss_pred HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehh
Confidence 2356799999999999999877766665544 223456889999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCccccccccc-CHHhHHHHhcccCCCC-CCeEEEccC
Q 003721 575 IFYVIDPGFAKQNVYNPKQRLDSLVITPI-SQASALQRAGRAGRTG-PGKCYRLYT 628 (800)
Q Consensus 575 v~~VId~g~~k~~~yd~~~~~~~l~~~p~-S~~~~~QR~GRaGR~g-~G~~~~L~t 628 (800)
+..||.+|+ |. |..+++||+|||||.+ .+..+..+.
T Consensus 383 ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 383 LDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999 98 9999999999999999 555444444
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=1.3e-28 Score=258.56 Aligned_cols=307 Identities=16% Similarity=0.128 Sum_probs=220.2
Q ss_pred HHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceee---e
Q 003721 293 KLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG---Y 368 (800)
Q Consensus 293 ~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg---~ 368 (800)
+.|++++.. +..+++|.|++|||+|||+++.++.+-+ ++..+++.|..+|...+...+.. +.+++...-. .
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----GGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLST 97 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----CCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhH
Confidence 358888887 5677899999999999999998887754 56889999999999988877643 2222211000 0
Q ss_pred e-----eecccccCCCceEEEechHHHH-----HHHhcCCCCCCCceEEEeccCcCC-CCcchHHHH--HHHHHhcCCCc
Q 003721 369 A-----IRFEDCTGPDTVIKYMTDGMLL-----REILIDENLSQYSVIMLDEAHERT-INTDVLFGL--LKQLVKRRPDL 435 (800)
Q Consensus 369 ~-----~~~~~~~~~~~~I~~~T~g~Ll-----~~l~~~~~l~~~~~IIiDEaHer~-~~~d~l~~~--lk~l~~~~~~~ 435 (800)
. +..-....++++++|.||++-- ..+..-..-..++++|+||||+.+ +..||-... |-.+....++.
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCC
Confidence 0 0011234578999999998532 222221234567899999999854 333443222 33455667899
Q ss_pred eEEEeccCCChHHHhh----hhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHh-------------hcCCCC
Q 003721 436 RLIVTSATLDAERFSG----YFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIH-------------VDEPEG 498 (800)
Q Consensus 436 kiI~lSATl~~~~~~~----~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~-------------~~~~~g 498 (800)
+.+.+|||.+++.-.+ .-+..|+-.+....|.-..+|...- .+.+...+..+.+.. ...-.|
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~-K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~G 256 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHM-KSFITDCLTVLADFSSSNLGKHEKASQNKKTFTG 256 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHH-HHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCc
Confidence 9999999998753333 3345565444444455555553221 112222222222111 111257
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEE
Q 003721 499 DILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYV 578 (800)
Q Consensus 499 ~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~V 578 (800)
..||||.|+++|+.++-.|... ++....+|+||...+|..+.+.|-+|+..||+||+.+++|||-|+|++|
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 7999999999999999988765 8889999999999999999999999999999999999999999999999
Q ss_pred EeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 579 IDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 579 Id~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
|+... |.+.+.|.|..|||||.| +..|=..|+.++.
T Consensus 328 iHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 328 IHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred EecCc------------------hhhhHHHHHhccccccCCCccceeeeecccch
Confidence 99988 999999999999999999 7888888887765
No 74
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=5.9e-28 Score=275.34 Aligned_cols=318 Identities=21% Similarity=0.257 Sum_probs=214.4
Q ss_pred hcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhc-cCCCeEEEecchHHHHHHHHHHHHHHhCCcccce
Q 003721 287 RSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGY-TTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEE 365 (800)
Q Consensus 287 ~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~-~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~ 365 (800)
..++++.||.+++...+ ++++||++|||+|||.++...++++.. ..+++|++++|++-|+.|+...+ ..++.+...
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~-~~~~~~~~~- 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACF-SIYLIPYSV- 135 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHH-hhccCcccc-
Confidence 45788999999999888 999999999999999999888887643 24579999999999999988554 334433111
Q ss_pred eeeeeecccc------cCCCceEEEechHHHHHHHhcCC--CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCC-Cce
Q 003721 366 VGYAIRFEDC------TGPDTVIKYMTDGMLLREILIDE--NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRP-DLR 436 (800)
Q Consensus 366 vg~~~~~~~~------~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~-~~k 436 (800)
+|... .... .-...++.|+||..|.+.+.+.. .++.++++|+|||| |......+-.+.+.+..... ..|
T Consensus 136 T~~l~-~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 136 TGQLG-DTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred eeecc-CccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcccc
Confidence 11100 0000 11357899999999998886533 27889999999999 77766666666766665433 339
Q ss_pred EEEeccCCChH--HHhhhhcC------CC------------------------------------------------ccc
Q 003721 437 LIVTSATLDAE--RFSGYFFN------CN------------------------------------------------IFS 460 (800)
Q Consensus 437 iI~lSATl~~~--~~~~~f~~------~~------------------------------------------------~~~ 460 (800)
+|++|||+... ....+..+ .. ++.
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~ 293 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIE 293 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccc
Confidence 99999999632 11111110 00 000
Q ss_pred CCCCc-----------------cceeEE---ec----------------c--------------ccchh-----------
Q 003721 461 IPGRT-----------------FPVDIN---YS----------------R--------------QEVTD----------- 479 (800)
Q Consensus 461 i~g~~-----------------~~v~~~---~~----------------~--------------~~~~~----------- 479 (800)
+.... ++-... +. . .....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~ 373 (746)
T KOG0354|consen 294 ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLI 373 (746)
T ss_pred cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhh
Confidence 00000 000000 00 0 00000
Q ss_pred ----------------------hHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEc
Q 003721 480 ----------------------YLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVY 537 (800)
Q Consensus 480 ----------------------~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh 537 (800)
.++.....+.+.....+..++|||+.+++.+..+...|.+. ...+- .+.+-+..-+
T Consensus 374 ~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~i-r~~~fiGq~~ 451 (746)
T KOG0354|consen 374 RNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGI-KAEIFIGQGK 451 (746)
T ss_pred HHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhccc-ccceeeeccc
Confidence 00001111122222344567999999999999999998762 11111 1122222212
Q ss_pred ----CCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhc
Q 003721 538 ----SALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAG 613 (800)
Q Consensus 538 ----~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~G 613 (800)
.+|++.+|.++++.|++|..+|||||+++|.|+||+.++.||-||+ ..+....+||.|
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~snpIrmIQrrG 513 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDY------------------SSNPIRMVQRRG 513 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecC------------------CccHHHHHHHhc
Confidence 4899999999999999999999999999999999999999998888 778899999999
Q ss_pred ccCCCCCCeEEEccChH
Q 003721 614 RAGRTGPGKCYRLYTES 630 (800)
Q Consensus 614 RaGR~g~G~~~~L~t~~ 630 (800)
| ||...|+|+.|++..
T Consensus 514 R-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 514 R-GRARNSKCVLLTTGS 529 (746)
T ss_pred c-ccccCCeEEEEEcch
Confidence 9 999999999999943
No 75
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.4e-29 Score=261.53 Aligned_cols=307 Identities=17% Similarity=0.236 Sum_probs=238.1
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchHHHHHHHHHHHHHHhCC----cccce
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRRVAATSVAKRVAEEFGC----RLGEE 365 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r~la~qva~rv~~~~g~----~~g~~ 365 (800)
..+|+.+|..+..|.++++.+.+|+|||.++...++...-.. ...+++++|+|+||.|+.+.+ ..+|. .+...
T Consensus 50 SaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~-~~lg~~~~~~v~~~ 128 (397)
T KOG0327|consen 50 SAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVV-RALGDHMDVSVHAC 128 (397)
T ss_pred hHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHH-Hhhhcccceeeeee
Confidence 356888888889999999999999999999888888763221 237889999999999998543 44433 33333
Q ss_pred eeeeeec-cc--ccCCCceEEEechHHHHHHHhcCCC-CCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 366 VGYAIRF-ED--CTGPDTVIKYMTDGMLLREILIDEN-LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 366 vg~~~~~-~~--~~~~~~~I~~~T~g~Ll~~l~~~~~-l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
+|..... +. .......|++.|||+....+..... ...+.+.|+|||+| ++..++...+...+....++.|++++|
T Consensus 129 igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdqI~~if~~lp~~vQv~l~S 207 (397)
T KOG0327|consen 129 IGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQIYDIFQELPSDVQVVLLS 207 (397)
T ss_pred cCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHHHHHHHHHcCcchhheeec
Confidence 4432222 11 2234578999999999998866544 56699999999996 667778777777777788999999999
Q ss_pred cCCChH--HHhhhhcCCCcccCCCC---c-cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 003721 442 ATLDAE--RFSGYFFNCNIFSIPGR---T-FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACE 515 (800)
Q Consensus 442 ATl~~~--~~~~~f~~~~~~~i~g~---~-~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~ 515 (800)
||++.+ .....|...|+...-.+ + --+..+|..... ++++.++..++. .-.+.+||||+++.+..+..
T Consensus 208 AT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k----~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~ 281 (397)
T KOG0327|consen 208 ATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEK----EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTD 281 (397)
T ss_pred ccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccc----cccccHHHHHHH--hhhcceEEecchhhHHHHHH
Confidence 999875 56667776654322111 1 001111211111 125566666666 46779999999999999999
Q ss_pred HHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCc
Q 003721 516 SLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRL 595 (800)
Q Consensus 516 ~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~ 595 (800)
.|..+ ++.+..+||.|.+.+|..+...|+.|..+|||.|+.+++|+|+-.+..||++++
T Consensus 282 ~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl------------ 340 (397)
T KOG0327|consen 282 KLRAH---------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL------------ 340 (397)
T ss_pred HHhhC---------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc------------
Confidence 99655 889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 596 DSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 596 ~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|...++|.||+||+||.| +|.++.+.++.+..
T Consensus 341 ------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 341 ------PARKENYIHRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred ------ccchhhhhhhcccccccCCCceeeeeehHhhHH
Confidence 999999999999999999 99999999987764
No 76
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=246.64 Aligned_cols=307 Identities=17% Similarity=0.170 Sum_probs=217.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeee
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAI 370 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~ 370 (800)
..|.|..+|++.+.+.+++++.|||.||++++.+|.+-. .|-.+++.|...|...+.-.+.+ +|......-..+.
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----dg~alvi~plislmedqil~lkq-lgi~as~lnanss 169 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----DGFALVICPLISLMEDQILQLKQ-LGIDASMLNANSS 169 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----CCceEeechhHHHHHHHHHHHHH-hCcchhhccCccc
Confidence 445699999999999999999999999999988887654 67899999999999876655533 3332211111001
Q ss_pred -----ecc---cccCCCceEEEechHHHH------HHHhcCCCCCCCceEEEeccCcCC-----CCcch-HHHHHHHHHh
Q 003721 371 -----RFE---DCTGPDTVIKYMTDGMLL------REILIDENLSQYSVIMLDEAHERT-----INTDV-LFGLLKQLVK 430 (800)
Q Consensus 371 -----~~~---~~~~~~~~I~~~T~g~Ll------~~l~~~~~l~~~~~IIiDEaHer~-----~~~d~-l~~~lk~l~~ 430 (800)
+.+ .......+++|+||+.+- ..+........+.+|-|||+|+.+ +.+|+ .++++ .+
T Consensus 170 ke~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~il---kr 246 (695)
T KOG0353|consen 170 KEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGIL---KR 246 (695)
T ss_pred HHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHH---HH
Confidence 001 122356789999999553 333334456788999999999844 33333 34444 44
Q ss_pred cCCCceEEEeccCCChHHHhh---hhcCCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhc-CCCCCEEEEcCC
Q 003721 431 RRPDLRLIVTSATLDAERFSG---YFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVD-EPEGDILLFLTG 506 (800)
Q Consensus 431 ~~~~~kiI~lSATl~~~~~~~---~f~~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~-~~~g~iLVF~~s 506 (800)
.+++.++|+++||..+..+.+ .+.-...+++..........|.....+...+..+..+...... ..+...||||-+
T Consensus 247 qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~s 326 (695)
T KOG0353|consen 247 QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFS 326 (695)
T ss_pred hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEec
Confidence 588999999999987543222 1111111222111111122222222222223333333333332 234457999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccc
Q 003721 507 QEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQ 586 (800)
Q Consensus 507 ~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~ 586 (800)
+++++.++..|... ++....+|+.|.++++.-+.+.|..|++.|||||-++++|||-|+|++||+..+
T Consensus 327 q~d~ekva~alkn~---------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl--- 394 (695)
T KOG0353|consen 327 QKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL--- 394 (695)
T ss_pred cccHHHHHHHHHhc---------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEeccc---
Confidence 99999999999876 888999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccccccCHHhHHH-------------------------------------------HhcccCCCC-CCe
Q 003721 587 NVYNPKQRLDSLVITPISQASALQ-------------------------------------------RAGRAGRTG-PGK 622 (800)
Q Consensus 587 ~~yd~~~~~~~l~~~p~S~~~~~Q-------------------------------------------R~GRaGR~g-~G~ 622 (800)
|.|.++|.| ..|||||.+ +..
T Consensus 395 ---------------~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ 459 (695)
T KOG0353|consen 395 ---------------PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKAD 459 (695)
T ss_pred ---------------chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCccc
Confidence 999999999 899999999 899
Q ss_pred EEEccChHHh
Q 003721 623 CYRLYTESAY 632 (800)
Q Consensus 623 ~~~L~t~~~~ 632 (800)
|+..|.-.+.
T Consensus 460 cilyy~~~di 469 (695)
T KOG0353|consen 460 CILYYGFADI 469 (695)
T ss_pred EEEEechHHH
Confidence 9999885553
No 77
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.6e-29 Score=278.70 Aligned_cols=325 Identities=18% Similarity=0.241 Sum_probs=245.0
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceee
Q 003721 288 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG 367 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg 367 (800)
++-+.++|..+|..+..++.|+|+|.|.+|||.++..++... +..+.+|+|+.|-++|.+|.++.+..+|+ .+|..+|
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMTG 204 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFK-DVGLMTG 204 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhcCeEEeeChhhhhcchhHHHHHHHhc-ccceeec
Confidence 345788999999999999999999999999999988777766 66778999999999999999999999995 3455444
Q ss_pred eeeecccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 368 YAIRFEDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 368 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
+...+|+....+||+++|..++.... .+..+..||+||+| .+-+.+--.-+-..+.-...+.+.+++|||+++
T Consensus 205 -----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 205 -----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFLSATIPN 278 (1041)
T ss_pred -----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEEeccCCC
Confidence 44567888899999999999886654 48999999999999 444433211112223334678999999999976
Q ss_pred -HHHhhhhc-----CCCcccCCCCccceeEEeccc----------cchhhHHHHHH------------------------
Q 003721 447 -ERFSGYFF-----NCNIFSIPGRTFPVDINYSRQ----------EVTDYLDSALI------------------------ 486 (800)
Q Consensus 447 -~~~~~~f~-----~~~~~~i~g~~~~v~~~~~~~----------~~~~~~~~~l~------------------------ 486 (800)
..|++|.. .|.++....|+.|+..+..+. ....+.+..+.
T Consensus 279 A~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~k 358 (1041)
T KOG0948|consen 279 ARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRK 358 (1041)
T ss_pred HHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccccccc
Confidence 47777763 366666777777776553221 11111111111
Q ss_pred --------------HHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHH------------------HHhhCC---CCC--
Q 003721 487 --------------TVLQIHVDEPEGDILLFLTGQEEIDFACESLCEK------------------IKALGK---DVP-- 529 (800)
Q Consensus 487 --------------~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~------------------l~~~~~---~~~-- 529 (800)
.++.........++|||+-++++|+..|-.+.+. +..+.. ..|
T Consensus 359 G~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqi 438 (1041)
T KOG0948|consen 359 GGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQI 438 (1041)
T ss_pred CCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHH
Confidence 2222222333568999999999999988766432 111111 111
Q ss_pred -------CeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccc
Q 003721 530 -------ELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITP 602 (800)
Q Consensus 530 -------~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p 602 (800)
.-.|..|||||-+-.++.|+-.|.+|-+++|+||-+++.|+|.|.-++|+ ...+.||++... |
T Consensus 439 e~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG~~fR------w 508 (1041)
T KOG0948|consen 439 ENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFDGKKFR------W 508 (1041)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccCCccee------e
Confidence 12478899999999999999999999999999999999999999999988 667788887653 9
Q ss_pred cCHHhHHHHhcccCCCC---CCeEEEccChH
Q 003721 603 ISQASALQRAGRAGRTG---PGKCYRLYTES 630 (800)
Q Consensus 603 ~S~~~~~QR~GRaGR~g---~G~~~~L~t~~ 630 (800)
+|.-+|+||+|||||.| .|.|+.+.++.
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCc
Confidence 99999999999999999 79999998853
No 78
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1.6e-27 Score=290.03 Aligned_cols=313 Identities=18% Similarity=0.216 Sum_probs=215.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC---cccce
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC---RLGEE 365 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~---~~g~~ 365 (800)
++.++||.+++..+..+ ++++++|||+|||.++...+.......++++++++|+++|+.|+++.+.+.++. .++..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 55678899998887776 899999999999998887777665455779999999999999999998887765 22222
Q ss_pred eeeeeecc-cccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 366 VGYAIRFE-DCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 366 vg~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
.|.....+ ...-....|+++|++.+...+.... .+.++++||+|||| +.........+.+......+...+++||||
T Consensus 93 ~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~lTaT 171 (773)
T PRK13766 93 TGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGLTAS 171 (773)
T ss_pred eCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEEEcC
Confidence 22111000 0011245799999999988776544 47899999999999 454443344445555555567789999999
Q ss_pred CCh--HHHhhhhcCC--CcccCCCC--------ccceeEEecc-------------------------------------
Q 003721 444 LDA--ERFSGYFFNC--NIFSIPGR--------TFPVDINYSR------------------------------------- 474 (800)
Q Consensus 444 l~~--~~~~~~f~~~--~~~~i~g~--------~~~v~~~~~~------------------------------------- 474 (800)
+.. +.+.....+- ..+.+..+ ..+..+.+..
T Consensus 172 P~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~ 251 (773)
T PRK13766 172 PGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPD 251 (773)
T ss_pred CCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCC
Confidence 842 1221111100 00000000 0000000000
Q ss_pred -------------------ccch------------------------------hhHH-----------------------
Q 003721 475 -------------------QEVT------------------------------DYLD----------------------- 482 (800)
Q Consensus 475 -------------------~~~~------------------------------~~~~----------------------- 482 (800)
.... .|+.
T Consensus 252 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~ 331 (773)
T PRK13766 252 VSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPR 331 (773)
T ss_pred cCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHH
Confidence 0000 0000
Q ss_pred ---------------HHHHHHHHHh----hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCC----
Q 003721 483 ---------------SALITVLQIH----VDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSA---- 539 (800)
Q Consensus 483 ---------------~~l~~v~~i~----~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~---- 539 (800)
.++..+..+. ...+++++||||+++..++.+++.|... ++.+..+||.
T Consensus 332 ~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~~ 402 (773)
T PRK13766 332 FRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEcccccc
Confidence 0001111111 1145678999999999999999988543 5566677765
Q ss_pred ----CCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhccc
Q 003721 540 ----LPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRA 615 (800)
Q Consensus 540 ----l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRa 615 (800)
+++.+|..+++.|++|..+|||||+++++|+|+|++++||+|+. |.+...|+||+||+
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~GR~ 464 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRKGRT 464 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999888 88999999999999
Q ss_pred CCCCCCeEEEccChH
Q 003721 616 GRTGPGKCYRLYTES 630 (800)
Q Consensus 616 GR~g~G~~~~L~t~~ 630 (800)
||.++|.+|.|+++.
T Consensus 465 gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 465 GRQEEGRVVVLIAKG 479 (773)
T ss_pred CcCCCCEEEEEEeCC
Confidence 999999999999843
No 79
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2.1e-28 Score=291.02 Aligned_cols=307 Identities=19% Similarity=0.179 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeee
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIR 371 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~ 371 (800)
++-|.++|.+++.|++++|.+|||+||+.++.+|.+-. ++..+++.|...|...+...+. ..++......+....
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----~gitvVISPL~SLm~DQv~~L~-~~~I~a~~L~s~q~~ 340 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----GGVTVVISPLISLMQDQVTHLS-KKGIPACFLSSIQTA 340 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----CCceEEeccHHHHHHHHHHhhh-hcCcceeeccccccH
Confidence 45599999999999999999999999998887665532 5588999999999998887772 233222211111111
Q ss_pred ------cccccC--CCceEEEechHHHHHHHh---cCCCCCC---CceEEEeccCcCCCC-cchH--HHHHHHHHhcCCC
Q 003721 372 ------FEDCTG--PDTVIKYMTDGMLLREIL---IDENLSQ---YSVIMLDEAHERTIN-TDVL--FGLLKQLVKRRPD 434 (800)
Q Consensus 372 ------~~~~~~--~~~~I~~~T~g~Ll~~l~---~~~~l~~---~~~IIiDEaHer~~~-~d~l--~~~lk~l~~~~~~ 434 (800)
+..... +..+|+|+||+.+...-. ....+.. +.++||||||+-+-+ .||- ...+..+..+++.
T Consensus 341 ~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~ 420 (941)
T KOG0351|consen 341 AERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG 420 (941)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC
Confidence 111122 478999999997654321 1112333 899999999986533 3332 2234444556788
Q ss_pred ceEEEeccCCChH---HHhhhhc--CCCcccCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 003721 435 LRLIVTSATLDAE---RFSGYFF--NCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEE 509 (800)
Q Consensus 435 ~kiI~lSATl~~~---~~~~~f~--~~~~~~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~ 509 (800)
.++|.+|||.... ++.+.+. +++++.- ...+-..+|...+..+ .+.....+..+....+.+.+||+|.++.+
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~--sfnR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPELFKS--SFNRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKE 497 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCcceecc--cCCCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcch
Confidence 9999999999753 4444332 2332221 1122223333222221 22333344444455667889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceee
Q 003721 510 IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVY 589 (800)
Q Consensus 510 i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~y 589 (800)
|+.++..|... ++....||+||++.+|..|...|-.++.+|||||=++++|||.|||+.|||+++
T Consensus 498 ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l------ 562 (941)
T KOG0351|consen 498 CEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL------ 562 (941)
T ss_pred HHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC------
Confidence 99999999886 678899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHhh
Q 003721 590 NPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAYR 633 (800)
Q Consensus 590 d~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~~ 633 (800)
|.|.+.|+|.+|||||.| +..|..||+..++.
T Consensus 563 ------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~ 595 (941)
T KOG0351|consen 563 ------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADIS 595 (941)
T ss_pred ------------chhHHHHHHhccccCcCCCcceeEEecchhHHH
Confidence 999999999999999999 99999999988763
No 80
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=4.4e-28 Score=274.98 Aligned_cols=323 Identities=16% Similarity=0.183 Sum_probs=235.0
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceee
Q 003721 288 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG 367 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg 367 (800)
++.+..+|.+++.++..+..|+|.|+|.+|||.++..++.-. ..++.+.+|+.|-++|.+|.++.+.+.||. +|.
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vgL--- 369 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD-VGL--- 369 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc-cce---
Confidence 455789999999999999999999999999998887665533 445679999999999999999999999863 233
Q ss_pred eeeecccccCCCceEEEechHHHHHHHhcCCC-CCCCceEEEeccCcCCCCcchHHHHHHH-HHhcCCCceEEEeccCCC
Q 003721 368 YAIRFEDCTGPDTVIKYMTDGMLLREILIDEN-LSQYSVIMLDEAHERTINTDVLFGLLKQ-LVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 368 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~-l~~~~~IIiDEaHer~~~~d~l~~~lk~-l~~~~~~~kiI~lSATl~ 445 (800)
+..+....+...+++||+++|..++..... ++++..||+||+| ..-+.+-- .++.. ++-..+.+++|++|||++
T Consensus 370 --lTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH-YiND~eRG-vVWEEViIMlP~HV~~IlLSATVP 445 (1248)
T KOG0947|consen 370 --LTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YINDVERG-VVWEEVIIMLPRHVNFILLSATVP 445 (1248)
T ss_pred --eecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-eccccccc-ccceeeeeeccccceEEEEeccCC
Confidence 344667788999999999999999876654 7899999999999 22222110 11112 223456899999999997
Q ss_pred h-HHHhhhhcCCC-----cccCCCCccceeEEeccccc-h-------hhHH-----------------------------
Q 003721 446 A-ERFSGYFFNCN-----IFSIPGRTFPVDINYSRQEV-T-------DYLD----------------------------- 482 (800)
Q Consensus 446 ~-~~~~~~f~~~~-----~~~i~g~~~~v~~~~~~~~~-~-------~~~~----------------------------- 482 (800)
+ ..|++|.+... ++..+.|+.|++.++..... . .++.
T Consensus 446 N~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rg 525 (1248)
T KOG0947|consen 446 NTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRG 525 (1248)
T ss_pred ChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccc
Confidence 5 58888887532 34445677777654321100 0 0000
Q ss_pred ------------------------H---HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHH--------------
Q 003721 483 ------------------------S---ALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKI-------------- 521 (800)
Q Consensus 483 ------------------------~---~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l-------------- 521 (800)
. ....++.......--|++|||-+++.|+..++.|...-
T Consensus 526 s~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl 605 (1248)
T KOG0947|consen 526 SQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFL 605 (1248)
T ss_pred ccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHH
Confidence 0 01112222223334579999999999999999885420
Q ss_pred ----HhhC---CCCC---------CeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCcc
Q 003721 522 ----KALG---KDVP---------ELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAK 585 (800)
Q Consensus 522 ----~~~~---~~~~---------~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k 585 (800)
..+. ...| .-.++.||||+-+-.++-|+..|..|-+|||+||-++++|||.|.-++|+++-
T Consensus 606 ~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl--- 682 (1248)
T KOG0947|consen 606 SKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSL--- 682 (1248)
T ss_pred HHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeeh---
Confidence 0011 1111 12478899999999999999999999999999999999999999999998443
Q ss_pred ceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccCh
Q 003721 586 QNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTE 629 (800)
Q Consensus 586 ~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~ 629 (800)
..+|++... -..+-+|.||+|||||.| .|.++.+.+.
T Consensus 683 -~KhDG~efR------~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 683 -RKHDGNEFR------ELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred -hhccCccee------ecCChhHHhhhccccccccCcCceEEEEecC
Confidence 355555433 577899999999999999 7988888764
No 81
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-27 Score=283.00 Aligned_cols=326 Identities=19% Similarity=0.209 Sum_probs=243.5
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCc---c
Q 003721 286 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCR---L 362 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~---~ 362 (800)
..++.+.++|++++.++..+..|+|+||||||||.++..++... +..+.+++|+.|.++|.+|.+.++..++|.. +
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~a-l~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~v 193 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALA-LRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMV 193 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHH-HHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhc
Confidence 45677899999999999999999999999999998887766655 5567789999999999999999999999854 3
Q ss_pred cceeeeeeecccccCCCceEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
|..+| +...++++.+.+||+++|..++..+ ..+..+..||+||+|. +-+.+--..+-.-++.....+++|+||
T Consensus 194 GL~TG-----Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D~eRG~VWEE~Ii~lP~~v~~v~LS 267 (1041)
T COG4581 194 GLMTG-----DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGDRERGVVWEEVIILLPDHVRFVFLS 267 (1041)
T ss_pred cceec-----ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee-ccccccchhHHHHHHhcCCCCcEEEEe
Confidence 44333 4556788899999999999988766 5699999999999993 333332111112222334567999999
Q ss_pred cCCC-hHHHhhhhc-----CCCcccCCCCccceeEEeccc-cc-------hhhHHH----HH------------------
Q 003721 442 ATLD-AERFSGYFF-----NCNIFSIPGRTFPVDINYSRQ-EV-------TDYLDS----AL------------------ 485 (800)
Q Consensus 442 ATl~-~~~~~~~f~-----~~~~~~i~g~~~~v~~~~~~~-~~-------~~~~~~----~l------------------ 485 (800)
||++ +..|..|+. .+.++....|+.|++.++... .. .+.... +.
T Consensus 268 ATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 347 (1041)
T COG4581 268 ATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDV 347 (1041)
T ss_pred CCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccc
Confidence 9996 568888886 355667777888888776543 10 000000 00
Q ss_pred --------------------HHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHH----------H---------HHhhCC
Q 003721 486 --------------------ITVLQIHVDEPEGDILLFLTGQEEIDFACESLCE----------K---------IKALGK 526 (800)
Q Consensus 486 --------------------~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~----------~---------l~~~~~ 526 (800)
..++........-++|+|+-++..|+..+..+.. . +..+..
T Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ 427 (1041)
T COG4581 348 GRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAE 427 (1041)
T ss_pred ccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcCh
Confidence 0112222223345799999999999998876641 1 111111
Q ss_pred C---CC----------CeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCC
Q 003721 527 D---VP----------ELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ 593 (800)
Q Consensus 527 ~---~~----------~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~ 593 (800)
. .| .-.+..||+||-+..+..+...|..|-++|++||.+++.|+|.|.-++|+ ...+.||+..
T Consensus 428 ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~----~~l~K~dG~~ 503 (1041)
T COG4581 428 EDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF----TSLSKFDGNG 503 (1041)
T ss_pred hhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee----eeeEEecCCc
Confidence 1 11 11356899999999999999999999999999999999999999888887 6667777655
Q ss_pred CcccccccccCHHhHHHHhcccCCCC---CCeEEEccC
Q 003721 594 RLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYT 628 (800)
Q Consensus 594 ~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t 628 (800)
.. +.+..+|.|++|||||.| .|.++...+
T Consensus 504 ~r------~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 504 HR------WLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ee------ecChhHHHHhhhhhccccccccceEEEecC
Confidence 44 999999999999999999 799888855
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=2.1e-27 Score=292.67 Aligned_cols=291 Identities=16% Similarity=0.101 Sum_probs=188.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhC---Cccccee
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFG---CRLGEEV 366 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g---~~~g~~v 366 (800)
.++++|.++++.+..+++++++||||||||+.+ +++.......+.++++++|||+|+.|+++++.+... ..+....
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~-l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~ 158 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFG-LVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILY 158 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 457889999999999999999999999999644 333333334567999999999999999999865432 2221122
Q ss_pred eeee-e----c---ccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCC-----------cchHHHHHHH
Q 003721 367 GYAI-R----F---EDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIN-----------TDVLFGLLKQ 427 (800)
Q Consensus 367 g~~~-~----~---~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~-----------~d~l~~~lk~ 427 (800)
|... . . .........|+++||+.|.+.+. .....++++||||||| ++++ .+|....+..
T Consensus 159 g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i~~ 236 (1176)
T PRK09401 159 YHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDIEK 236 (1176)
T ss_pred ccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHHHH
Confidence 2111 0 0 00122457899999999998765 2335669999999999 4443 2231111111
Q ss_pred HHhc-------------------------CCCceEEEeccCCChHHHhh-hhcCCCcccCCCCc---cceeEEeccccch
Q 003721 428 LVKR-------------------------RPDLRLIVTSATLDAERFSG-YFFNCNIFSIPGRT---FPVDINYSRQEVT 478 (800)
Q Consensus 428 l~~~-------------------------~~~~kiI~lSATl~~~~~~~-~f~~~~~~~i~g~~---~~v~~~~~~~~~~ 478 (800)
+... ..+.+++++|||+++..... .|.+.-.+.+.... ..+...|....
T Consensus 237 i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~-- 314 (1176)
T PRK09401 237 AMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE-- 314 (1176)
T ss_pred HHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--
Confidence 1110 11578999999998642211 22111112211111 12333333222
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHH---HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC
Q 003721 479 DYLDSALITVLQIHVDEPEGDILLFLTGQEE---IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG 555 (800)
Q Consensus 479 ~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~---i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g 555 (800)
+. ...+..++. .. +.++||||+++.. ++.+++.|... ++.+..+||+| + +.++.|++|
T Consensus 315 ~k-~~~L~~ll~---~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~hg~l----~-~~l~~F~~G 375 (1176)
T PRK09401 315 DS-VEKLVELVK---RL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELAISGF----E-RKFEKFEEG 375 (1176)
T ss_pred cH-HHHHHHHHH---hc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEEeCcH----H-HHHHHHHCC
Confidence 11 112222222 22 3579999999776 99999888775 78999999999 2 234999999
Q ss_pred CceEEEe----ccchhhcCCCCC-eeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccC
Q 003721 556 GRKVVVA----TNIAEASLTIDG-IFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAG 616 (800)
Q Consensus 556 ~~kVLVA----T~iae~GIdip~-v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaG 616 (800)
+.+|||| |++++||||+|+ |+|||++|+.+.++- ......+.||.||+-
T Consensus 376 ~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~------------~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 376 EVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFS------------LEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEe------------ccccccCHHHHHHHH
Confidence 9999999 699999999999 899999999322210 014567788888884
No 83
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2e-28 Score=257.49 Aligned_cols=312 Identities=21% Similarity=0.217 Sum_probs=230.5
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC---CCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 284 EQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT---KGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 284 ~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~---~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
.++.+.|| |.+.++.++++++++..|-||||||.++..++++..... +-+.+++.|+|+||.|..+-+++ +|.
T Consensus 40 g~~~ptpi---qRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkd-lgr 115 (529)
T KOG0337|consen 40 GFNTPTPI---QRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKD-LGR 115 (529)
T ss_pred hcCCCCch---hcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHH-hcc
Confidence 34445555 999999999999999999999999999999999875443 34899999999999998776643 332
Q ss_pred ----cccceeeeeeeccc--ccCCCceEEEechHHHHHHHhc-CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCC
Q 003721 361 ----RLGEEVGYAIRFED--CTGPDTVIKYMTDGMLLREILI-DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRP 433 (800)
Q Consensus 361 ----~~g~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~-~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~ 433 (800)
+....+|+..-.+. ....+.+|+++|||+++..... +-.|+.+.+||+||++ |.+.++|...+-+.+.+...
T Consensus 116 gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~ 194 (529)
T KOG0337|consen 116 GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPE 194 (529)
T ss_pred ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCC
Confidence 22222332221111 1235678999999998765532 2358999999999999 89999888887777777777
Q ss_pred CceEEEeccCCChH--HHhhhhcCCCccc---CCCCcc-ceeEEeccccchhhHHHHHHHHHHHhhcC-CCCCEEEEcCC
Q 003721 434 DLRLIVTSATLDAE--RFSGYFFNCNIFS---IPGRTF-PVDINYSRQEVTDYLDSALITVLQIHVDE-PEGDILLFLTG 506 (800)
Q Consensus 434 ~~kiI~lSATl~~~--~~~~~f~~~~~~~---i~g~~~-~v~~~~~~~~~~~~~~~~l~~v~~i~~~~-~~g~iLVF~~s 506 (800)
+.+.++||||++.. .|+..=...|+.. +..+.. .+...+..... ......++.+.... .+.+++||+++
T Consensus 195 ~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~----a~K~aaLl~il~~~~~~~~t~vf~~t 270 (529)
T KOG0337|consen 195 SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK----AEKEAALLSILGGRIKDKQTIVFVAT 270 (529)
T ss_pred cceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc----HHHHHHHHHHHhccccccceeEEecc
Confidence 88999999999976 4544333332211 000000 00111111111 11222233322221 24579999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccc
Q 003721 507 QEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQ 586 (800)
Q Consensus 507 ~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~ 586 (800)
+.+++.+...|... +..+..+||+|+++.|..-+..|..++..++|.|+++++|+|||....|||+++
T Consensus 271 k~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~--- 338 (529)
T KOG0337|consen 271 KHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF--- 338 (529)
T ss_pred cchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC---
Confidence 99999988888765 677788999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 587 NVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 587 ~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
|.+..-|.||+||+.|.| .|.+|.+..+.+
T Consensus 339 ---------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 339 ---------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ---------------CCCCceEEEEecchhhccccceEEEEEeccc
Confidence 999999999999999999 899999987654
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=4.8e-26 Score=264.87 Aligned_cols=302 Identities=14% Similarity=0.138 Sum_probs=197.5
Q ss_pred cCCchHHHHHHHHHHHcC---CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccc
Q 003721 288 SLPIFKLKNELIQAVHDN---QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGE 364 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~---~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~ 364 (800)
...+++||.+++..+..+ +..+|++|||+|||.++...+... +++++|++|+.+|+.|....+.+..+...+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 456789999999997643 378999999999999887655443 4679999999999999999988765443322
Q ss_pred eeeeeeecccccCCCceEEEechHHHHHHHhcC-------CC--CCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCc
Q 003721 365 EVGYAIRFEDCTGPDTVIKYMTDGMLLREILID-------EN--LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDL 435 (800)
Q Consensus 365 ~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-------~~--l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ 435 (800)
...|.............|+++|..++....... .. -..+++||+|||| + +....+..++..+ ...
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~-lpA~~fr~il~~l----~a~ 402 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-V-VPAAMFRRVLTIV----QAH 402 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-c-ccHHHHHHHHHhc----CcC
Confidence 111211111111224678999999875321110 11 2578999999999 3 3333333333332 334
Q ss_pred eEEEeccCCChH--HH--hhhhcCCCcccC-------CCCccceeEE--eccccc---hhhHH-----------------
Q 003721 436 RLIVTSATLDAE--RF--SGYFFNCNIFSI-------PGRTFPVDIN--YSRQEV---TDYLD----------------- 482 (800)
Q Consensus 436 kiI~lSATl~~~--~~--~~~f~~~~~~~i-------~g~~~~v~~~--~~~~~~---~~~~~----------------- 482 (800)
..+++|||+..+ .. ..++.+..++.. .|..-++... +.+... ..|+.
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~ 482 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKF 482 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHH
Confidence 579999999522 11 222233333322 2222222211 111111 11111
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC-CceEEE
Q 003721 483 SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG-GRKVVV 561 (800)
Q Consensus 483 ~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g-~~kVLV 561 (800)
..+..++..|. ..+.++||||.+...++.++..| + +..+||+++..+|.++++.|+.| ..++||
T Consensus 483 ~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L------------~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 483 RACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL------------G--KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc------------C--CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 11112333332 24678999999998887776654 1 34589999999999999999875 789999
Q ss_pred eccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccc-cCHHhHHHHhcccCCCCC-CeE-------EEccChHHh
Q 003721 562 ATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITP-ISQASALQRAGRAGRTGP-GKC-------YRLYTESAY 632 (800)
Q Consensus 562 AT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p-~S~~~~~QR~GRaGR~g~-G~~-------~~L~t~~~~ 632 (800)
+|+++.+|||+|++++||+... | .|..+|+||+||++|.++ |.+ |.|.+++..
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~------------------~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISS------------------HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred EecccccccCCCCCCEEEEeCC------------------CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999997665 5 599999999999999994 444 778775543
No 85
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=8.9e-27 Score=292.62 Aligned_cols=313 Identities=14% Similarity=0.104 Sum_probs=197.7
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC-cccceeee
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC-RLGEEVGY 368 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~-~~g~~vg~ 368 (800)
..+++|.++++.+.++++++++||||||||+.+..+.+.. ...+.++++++|||+|+.|++.++...... .++..+.+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 3567899999999999999999999999998433333222 234568999999999999999988663311 01111111
Q ss_pred e---eecc-------cccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCC-----------cchHHHHHH-
Q 003721 369 A---IRFE-------DCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIN-----------TDVLFGLLK- 426 (800)
Q Consensus 369 ~---~~~~-------~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~-----------~d~l~~~lk- 426 (800)
. .... ........|+++||+.|.+.+..-. ..++++|||||||+ ++. .+|...+..
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHH
Confidence 1 0001 1123357899999998887654322 26799999999994 433 344333332
Q ss_pred ---HH---------------------Hhc-CCCce-EEEeccCCChH-HHhhhhcCCCcccCCCCc---cceeEEecccc
Q 003721 427 ---QL---------------------VKR-RPDLR-LIVTSATLDAE-RFSGYFFNCNIFSIPGRT---FPVDINYSRQE 476 (800)
Q Consensus 427 ---~l---------------------~~~-~~~~k-iI~lSATl~~~-~~~~~f~~~~~~~i~g~~---~~v~~~~~~~~ 476 (800)
.+ ... ....+ ++++|||++.. .....+...-.+.+.... ..+...|....
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~ 315 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE 315 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC
Confidence 11 111 12333 57799999863 333344322222222211 11222232211
Q ss_pred chhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHH---HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCC
Q 003721 477 VTDYLDSALITVLQIHVDEPEGDILLFLTGQEE---IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAP 553 (800)
Q Consensus 477 ~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~---i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~ 553 (800)
. ... . .+..+.... +..+||||++++. ++.+++.|.+. ++.+.++||+ |..+++.|+
T Consensus 316 ~-~~k-~---~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~h~~-----R~~~l~~F~ 375 (1638)
T PRK14701 316 K-IIK-E---HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELVSAK-----NKKGFDLFE 375 (1638)
T ss_pred H-HHH-H---HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEecch-----HHHHHHHHH
Confidence 1 111 1 232332222 4578999999875 47888888765 8999999995 889999999
Q ss_pred CCCceEEEec----cchhhcCCCCC-eeEEEeCCCcccee----ecCCCCcccccccccCHHhHHHHhcccCCCC-CCeE
Q 003721 554 PGGRKVVVAT----NIAEASLTIDG-IFYVIDPGFAKQNV----YNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKC 623 (800)
Q Consensus 554 ~g~~kVLVAT----~iae~GIdip~-v~~VId~g~~k~~~----yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~ 623 (800)
+|+.+||||| ++++||||+|+ |+|||++|+.+.++ |...... + .. .....++.|||||.| ++.|
T Consensus 376 ~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 376 EGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred cCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chHHHHHhhhhcccCCcchh
Confidence 9999999999 59999999999 99999999955321 1111110 0 00 233456679999999 8888
Q ss_pred EEccChHH
Q 003721 624 YRLYTESA 631 (800)
Q Consensus 624 ~~L~t~~~ 631 (800)
+..+...+
T Consensus 450 ~~~~~~~~ 457 (1638)
T PRK14701 450 VLDVFPED 457 (1638)
T ss_pred HHHhHHHH
Confidence 75555444
No 86
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=3.9e-25 Score=257.27 Aligned_cols=314 Identities=21% Similarity=0.239 Sum_probs=204.9
Q ss_pred HHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH---HhCCc
Q 003721 285 QRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE---EFGCR 361 (800)
Q Consensus 285 ~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~---~~g~~ 361 (800)
.++.+-+++++.|++..+.-++..|+.++||+|||+++..+++...+. +..++++.|++.||.+.+..+.. .+|..
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 355677788888898887777778999999999999999988766543 55799999999999998877644 44555
Q ss_pred ccceeeeee--ec---ccccCCCceEEEechHHH-HHHHh----c---CCCCCCCceEEEeccCcCCCCcc---------
Q 003721 362 LGEEVGYAI--RF---EDCTGPDTVIKYMTDGML-LREIL----I---DENLSQYSVIMLDEAHERTINTD--------- 419 (800)
Q Consensus 362 ~g~~vg~~~--~~---~~~~~~~~~I~~~T~g~L-l~~l~----~---~~~l~~~~~IIiDEaHer~~~~d--------- 419 (800)
+|..++... .. .......+.|+|+||+.| .+.+. . ...+..+.++||||||...++..
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~ 221 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGA 221 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCC
Confidence 443322100 01 111224688999999988 33331 1 22478899999999996212110
Q ss_pred -----hHHHHHHHHHh-cCC--------C---------------------------------------------------
Q 003721 420 -----VLFGLLKQLVK-RRP--------D--------------------------------------------------- 434 (800)
Q Consensus 420 -----~l~~~lk~l~~-~~~--------~--------------------------------------------------- 434 (800)
.+......+.. ..+ .
T Consensus 222 ~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dY 301 (762)
T TIGR03714 222 PRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDY 301 (762)
T ss_pred CccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 01111111111 000 0
Q ss_pred ----------------------------------------------------------ceEEEeccCCCh--HHHhhhhc
Q 003721 435 ----------------------------------------------------------LRLIVTSATLDA--ERFSGYFF 454 (800)
Q Consensus 435 ----------------------------------------------------------~kiI~lSATl~~--~~~~~~f~ 454 (800)
.++.+||.|... ..|.+. .
T Consensus 302 iV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i-Y 380 (762)
T TIGR03714 302 VVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET-Y 380 (762)
T ss_pred EEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH-h
Confidence 133344444321 122211 1
Q ss_pred CCCcccCCCCccceeEEeccc---cchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCe
Q 003721 455 NCNIFSIPGRTFPVDINYSRQ---EVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPEL 531 (800)
Q Consensus 455 ~~~~~~i~g~~~~v~~~~~~~---~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~ 531 (800)
+.+++.+|.........+... .........+..+.+.+ ..+.++||||++++.++.++..|.+. ++
T Consensus 381 ~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~---------gi 449 (762)
T TIGR03714 381 SLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE---------GI 449 (762)
T ss_pred CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC---------CC
Confidence 223333332221111111000 01111222233333333 34678999999999999999999775 78
Q ss_pred EEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCC---------CeeEEEeCCCccceeecCCCCcccccccc
Q 003721 532 VVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTID---------GIFYVIDPGFAKQNVYNPKQRLDSLVITP 602 (800)
Q Consensus 532 ~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip---------~v~~VId~g~~k~~~yd~~~~~~~l~~~p 602 (800)
.+..+||.+...++..+...+..| .|+||||+|+||+||| ++.+|+++.. |
T Consensus 450 ~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~------------------p 509 (762)
T TIGR03714 450 PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM------------------E 509 (762)
T ss_pred CEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCC------------------C
Confidence 888999999999999998888777 7999999999999999 9999998888 7
Q ss_pred cCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 603 ISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 603 ~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
..... .||+|||||.| +|.++.+++.++.
T Consensus 510 s~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 510 NSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 77666 99999999999 9999999987554
No 87
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.6e-25 Score=256.04 Aligned_cols=308 Identities=19% Similarity=0.114 Sum_probs=201.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHH---hCCcccce
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE---FGCRLGEE 365 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~---~g~~~g~~ 365 (800)
+-.|++|...+..+.+|+ |..+.||+|||.++.++++.... .+..++|+.|+++||.|.+..+... +|..++..
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i 178 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCV 178 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 455788999999999999 99999999999999999998744 4678999999999999998877654 35555544
Q ss_pred eeeeeecccccCCCceEEEechHHH-----HHHHhc----------------------CCCCCCCceEEEeccCcCCCC-
Q 003721 366 VGYAIRFEDCTGPDTVIKYMTDGML-----LREILI----------------------DENLSQYSVIMLDEAHERTIN- 417 (800)
Q Consensus 366 vg~~~~~~~~~~~~~~I~~~T~g~L-----l~~l~~----------------------~~~l~~~~~IIiDEaHer~~~- 417 (800)
+|............+.|+|+|+.-+ .+.+.. ......+.+.|||||+.-.+|
T Consensus 179 ~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 179 VEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDE 258 (656)
T ss_pred eCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeecc
Confidence 4432222222234678999998754 222211 112466789999999852111
Q ss_pred ----------------cchHHHHHHHHHhcCC------------------------------------------------
Q 003721 418 ----------------TDVLFGLLKQLVKRRP------------------------------------------------ 433 (800)
Q Consensus 418 ----------------~d~l~~~lk~l~~~~~------------------------------------------------ 433 (800)
.+++......+.....
T Consensus 259 artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 259 ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 0010000000000000
Q ss_pred ---------------------------------------------------------------------CceEEEeccCC
Q 003721 434 ---------------------------------------------------------------------DLRLIVTSATL 444 (800)
Q Consensus 434 ---------------------------------------------------------------------~~kiI~lSATl 444 (800)
-.++.+||||.
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 02556777777
Q ss_pred ChH--HHhhhhcCCCcccCCCCccceeEEe---ccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 003721 445 DAE--RFSGYFFNCNIFSIPGRTFPVDINY---SRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCE 519 (800)
Q Consensus 445 ~~~--~~~~~f~~~~~~~i~g~~~~v~~~~---~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~ 519 (800)
..+ .|...++-. ++.+|.........+ ......+........+...+ ..+.++||||++++.++.++..|.+
T Consensus 419 ~~~~~El~~~y~l~-vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~se~L~~~L~~ 495 (656)
T PRK12898 419 REVAGELWSVYGLP-VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAASERLSALLRE 495 (656)
T ss_pred hHHHHHHHHHHCCC-eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 532 344433322 233332221111100 00111112222222222222 1246799999999999999999987
Q ss_pred HHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCC---Cee-----EEEeCCCccceeecC
Q 003721 520 KIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTID---GIF-----YVIDPGFAKQNVYNP 591 (800)
Q Consensus 520 ~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip---~v~-----~VId~g~~k~~~yd~ 591 (800)
. ++.+..+||.++..++..+... .+...|+||||+|++|+||+ +|. +||++++
T Consensus 496 ~---------gi~~~~Lhg~~~~rE~~ii~~a--g~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~-------- 556 (656)
T PRK12898 496 A---------GLPHQVLNAKQDAEEAAIVARA--GQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTER-------- 556 (656)
T ss_pred C---------CCCEEEeeCCcHHHHHHHHHHc--CCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCC--------
Confidence 6 7889999999766555555544 44457999999999999999 776 9999999
Q ss_pred CCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 592 KQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 592 ~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
|.|...|.||+|||||.| +|.|+.+++.++
T Consensus 557 ----------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 557 ----------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred ----------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999 999999999755
No 88
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.3e-25 Score=258.58 Aligned_cols=308 Identities=21% Similarity=0.210 Sum_probs=197.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHH---hCCcccceee
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE---FGCRLGEEVG 367 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~---~g~~~g~~vg 367 (800)
.|++|.....++.+|+ |..+.||+|||.++.++++...+ .+..+.++.|++.||.+.+..+... +|..+|..+|
T Consensus 79 p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g 155 (790)
T PRK09200 79 PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFS 155 (790)
T ss_pred CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 3455555555555555 99999999999999998886544 4678999999999999988776544 4555554444
Q ss_pred eee-ecccccCCCceEEEechHHH-HHHHhc-------CCCCCCCceEEEeccCcCCCCcc--------------hHHHH
Q 003721 368 YAI-RFEDCTGPDTVIKYMTDGML-LREILI-------DENLSQYSVIMLDEAHERTINTD--------------VLFGL 424 (800)
Q Consensus 368 ~~~-~~~~~~~~~~~I~~~T~g~L-l~~l~~-------~~~l~~~~~IIiDEaHer~~~~d--------------~l~~~ 424 (800)
... ..+......+.|+|+|++.+ .+.+.. ...+..+.++||||||...++.. .+...
T Consensus 156 ~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~ 235 (790)
T PRK09200 156 DIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHI 235 (790)
T ss_pred CCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHH
Confidence 222 22222234578999999987 222211 12468899999999995222210 11111
Q ss_pred HHHHHhc-C--------CC-------------------------------------------------------------
Q 003721 425 LKQLVKR-R--------PD------------------------------------------------------------- 434 (800)
Q Consensus 425 lk~l~~~-~--------~~------------------------------------------------------------- 434 (800)
...+... . .+
T Consensus 236 ~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~iv 315 (790)
T PRK09200 236 AAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLV 315 (790)
T ss_pred HHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEE
Confidence 1111110 0 00
Q ss_pred ------------------------------------------------ceEEEeccCCChH--HHhhhhcCCCcccCCCC
Q 003721 435 ------------------------------------------------LRLIVTSATLDAE--RFSGYFFNCNIFSIPGR 464 (800)
Q Consensus 435 ------------------------------------------------~kiI~lSATl~~~--~~~~~f~~~~~~~i~g~ 464 (800)
.++.+||.|...+ .|... .+.+++.+|..
T Consensus 316 D~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~-Y~l~v~~IPt~ 394 (790)
T PRK09200 316 DRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV-YNMEVVQIPTN 394 (790)
T ss_pred ECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH-hCCcEEECCCC
Confidence 1233333333211 11111 12222333321
Q ss_pred ccceeEEeccccchhhHHHHHHHHHHHhhc--CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCH
Q 003721 465 TFPVDINYSRQEVTDYLDSALITVLQIHVD--EPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPS 542 (800)
Q Consensus 465 ~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~--~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~ 542 (800)
.......+... ...........+...... ..+.++||||++.+.++.++..|.+. ++.+..+||.+..
T Consensus 395 kp~~r~d~~~~-i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L~~~~~~ 464 (790)
T PRK09200 395 RPIIRIDYPDK-VFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLLNAKNAA 464 (790)
T ss_pred CCcccccCCCe-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCccH
Confidence 11000000000 000011222223222211 24678999999999999999999876 7889999999999
Q ss_pred HHHHhhcCcCCCCCceEEEeccchhhcCCC---CCee-----EEEeCCCccceeecCCCCcccccccccCHHhHHHHhcc
Q 003721 543 EIQSRIFEPAPPGGRKVVVATNIAEASLTI---DGIF-----YVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGR 614 (800)
Q Consensus 543 ~~R~~i~~~f~~g~~kVLVAT~iae~GIdi---p~v~-----~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GR 614 (800)
.++..+...+..| .|+||||+|+||+|| |+|. +||++++ |.|...|.||+||
T Consensus 465 ~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GR 524 (790)
T PRK09200 465 KEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------------MESRRVDLQLRGR 524 (790)
T ss_pred HHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccC------------------CCCHHHHHHhhcc
Confidence 9988888887776 799999999999999 7998 9999999 9999999999999
Q ss_pred cCCCC-CCeEEEccChHHh
Q 003721 615 AGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 615 aGR~g-~G~~~~L~t~~~~ 632 (800)
|||.| +|.|+.+++.++.
T Consensus 525 tGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 525 SGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccCCCCCeeEEEEEcchHH
Confidence 99999 9999999986554
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=8.1e-25 Score=259.48 Aligned_cols=313 Identities=19% Similarity=0.211 Sum_probs=204.6
Q ss_pred CCchHHHHHHHHHHHc---CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccce
Q 003721 289 LPIFKLKNELIQAVHD---NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEE 365 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~---~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~ 365 (800)
..+++.|.++++.+.+ ++++++.|+||||||.++..++.+. +..++++++++|+++|+.|+++++.+.+|..+...
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 4577889999999887 4789999999999999988776655 45577999999999999999999999888766544
Q ss_pred eeeeeec------ccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch---H-HHHHHHHHhcCCCc
Q 003721 366 VGYAIRF------EDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV---L-FGLLKQLVKRRPDL 435 (800)
Q Consensus 366 vg~~~~~------~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~---l-~~~lk~l~~~~~~~ 435 (800)
.|..... .........|+++|++.+. ..+.++++|||||+|+.+...+- + ..-+........+.
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~ 295 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENI 295 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCC
Confidence 4422111 1122345789999998764 24788999999999975543321 0 11112233345688
Q ss_pred eEEEeccCCChHHHhhhhcC-CCcccCCCC----ccc-eeEEecccc----chhhH-HHHHHHHHHHhhcCCCCCEEEEc
Q 003721 436 RLIVTSATLDAERFSGYFFN-CNIFSIPGR----TFP-VDINYSRQE----VTDYL-DSALITVLQIHVDEPEGDILLFL 504 (800)
Q Consensus 436 kiI~lSATl~~~~~~~~f~~-~~~~~i~g~----~~~-v~~~~~~~~----~~~~~-~~~l~~v~~i~~~~~~g~iLVF~ 504 (800)
++|++|||++.+.+.....+ ...+..+.+ ..| +.+.-.... ....+ ...+..+.+.. ..+.++|||+
T Consensus 296 ~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~ 373 (679)
T PRK05580 296 PVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFL 373 (679)
T ss_pred CEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEE
Confidence 99999999987766553221 222222222 122 111111110 00011 11222222221 1255799998
Q ss_pred CCHHH------------------------------------------------------------HHHHHHHHHHHHHhh
Q 003721 505 TGQEE------------------------------------------------------------IDFACESLCEKIKAL 524 (800)
Q Consensus 505 ~s~~~------------------------------------------------------------i~~l~~~L~~~l~~~ 524 (800)
|.+.. ++.+++.|.+
T Consensus 374 nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~----- 448 (679)
T PRK05580 374 NRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE----- 448 (679)
T ss_pred cCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH-----
Confidence 86432 2223333322
Q ss_pred CCCCCCeEEEEEcCCCC--HHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEE--eCCCccceeecCCCCcccccc
Q 003721 525 GKDVPELVVLPVYSALP--SEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVI--DPGFAKQNVYNPKQRLDSLVI 600 (800)
Q Consensus 525 ~~~~~~~~v~~lh~~l~--~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VI--d~g~~k~~~yd~~~~~~~l~~ 600 (800)
..|+..+..+|+++. .++++++++.|++|+.+|||+|+++++|+|+|+|++|+ |.+. ......+..
T Consensus 449 --~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~--------~l~~pdfra 518 (679)
T PRK05580 449 --LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADL--------GLFSPDFRA 518 (679)
T ss_pred --hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCch--------hccCCccch
Confidence 235678899999986 46789999999999999999999999999999999885 4443 111111111
Q ss_pred cccCHHhHHHHhcccCCCC-CCeEEE
Q 003721 601 TPISQASALQRAGRAGRTG-PGKCYR 625 (800)
Q Consensus 601 ~p~S~~~~~QR~GRaGR~g-~G~~~~ 625 (800)
.-.....+.|++|||||.+ +|.++.
T Consensus 519 ~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 519 SERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 2234678999999999977 888884
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.6e-24 Score=219.88 Aligned_cols=291 Identities=20% Similarity=0.269 Sum_probs=207.8
Q ss_pred HHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhC-Ccccceeeeeeeccc
Q 003721 296 NELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFG-CRLGEEVGYAIRFED 374 (800)
Q Consensus 296 ~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g-~~~g~~vg~~~~~~~ 374 (800)
.++++.+.+.++.+|.|-||+|||..+.+.+... +..|++|++..||.-.+.+++.|+.+.|. +.+....|. .
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~-----S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGD-----S 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecC-----C
Confidence 4567778899999999999999998887766544 77899999999999999999999999885 554433332 1
Q ss_pred ccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch-HHHHHHHHHhcCCCceEEEeccCCChHHHhhhh
Q 003721 375 CTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV-LFGLLKQLVKRRPDLRLIVTSATLDAERFSGYF 453 (800)
Q Consensus 375 ~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~-l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f 453 (800)
..--.+.++++|.-.|++. -+.++++||||+|...+..|- |....+... .+.-.+|.+|||++.+...+..
T Consensus 181 ~~~fr~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ar--k~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKAR--KKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred chhccccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHhh--cccCceEEEecCChHHHHHHhh
Confidence 1122367899999999885 357899999999988777774 333344433 3455689999999865443333
Q ss_pred cC-CCcccCCCC----ccceeEEeccccchhh-----HHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHh
Q 003721 454 FN-CNIFSIPGR----TFPVDINYSRQEVTDY-----LDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKA 523 (800)
Q Consensus 454 ~~-~~~~~i~g~----~~~v~~~~~~~~~~~~-----~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~ 523 (800)
.+ ...+.+|.| +.|+..+.-....... +..++...++.+.. .+.++|||+|+.+..+.++..|.+.+
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~~lk~~~-- 329 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRK-TGRPVLIFFPEIETMEQVAAALKKKL-- 329 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHh-cCCcEEEEecchHHHHHHHHHHHhhC--
Confidence 22 222344433 2333322221122222 22344555554443 36789999999999999999997653
Q ss_pred hCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCccccccccc
Q 003721 524 LGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPI 603 (800)
Q Consensus 524 ~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~ 603 (800)
+...+..+||. ...|.+..+.|++|+.++|++|.|+|+|+|+|+|+++| .+.... -.
T Consensus 330 -----~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V---------lgaeh~-------vf 386 (441)
T COG4098 330 -----PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV---------LGAEHR-------VF 386 (441)
T ss_pred -----Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE---------ecCCcc-------cc
Confidence 46677889987 46788888999999999999999999999999999876 111111 36
Q ss_pred CHHhHHHHhcccCCCC---CCeEEEc
Q 003721 604 SQASALQRAGRAGRTG---PGKCYRL 626 (800)
Q Consensus 604 S~~~~~QR~GRaGR~g---~G~~~~L 626 (800)
+.+..+|.+||+||.- .|..+.+
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 8899999999999987 4654444
No 91
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=1.4e-24 Score=268.07 Aligned_cols=274 Identities=16% Similarity=0.127 Sum_probs=178.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHh---CCccc---
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF---GCRLG--- 363 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~---g~~~g--- 363 (800)
.++++|..+++.+..|++++++||||||||+.+ +++.......+.++++++|||+||.|++..+.+.. +....
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 457889999999999999999999999999743 44444434456799999999999999998876644 22211
Q ss_pred ceeeeee---e---cccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCC-----------cchHHHHHH
Q 003721 364 EEVGYAI---R---FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIN-----------TDVLFGLLK 426 (800)
Q Consensus 364 ~~vg~~~---~---~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~-----------~d~l~~~lk 426 (800)
...|... + .+.....+..|+++||++|.+.+..-. .+++++|||||| ++++ .+|....+.
T Consensus 157 ~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~i~ 233 (1171)
T TIGR01054 157 AYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEELIE 233 (1171)
T ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChH-hhhhccccHHHHHHHcCCCHHHHH
Confidence 1112110 0 011122357899999999987764321 289999999999 5554 233221111
Q ss_pred HH-----------------------HhcCCCc--eEEEeccCCChHHHh-hhhcCCCcccCCCCc---cceeEEeccccc
Q 003721 427 QL-----------------------VKRRPDL--RLIVTSATLDAERFS-GYFFNCNIFSIPGRT---FPVDINYSRQEV 477 (800)
Q Consensus 427 ~l-----------------------~~~~~~~--kiI~lSATl~~~~~~-~~f~~~~~~~i~g~~---~~v~~~~~~~~~ 477 (800)
.+ .....+. .++++|||+.+.... .+|...-.+.+.... ..+...|.....
T Consensus 234 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~ 313 (1171)
T TIGR01054 234 KAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED 313 (1171)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEeccc
Confidence 11 1111223 367789995332222 222221112222111 123333332211
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCEEEEcCCH---HHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCC
Q 003721 478 TDYLDSALITVLQIHVDEPEGDILLFLTGQ---EEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPP 554 (800)
Q Consensus 478 ~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~---~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~ 554 (800)
.. ..+..++. .. +.++||||+++ +.++.++..|.+. ++.+..+||+++. .+++.|++
T Consensus 314 --~~-~~L~~ll~---~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~~lhg~~~~----~~l~~Fr~ 373 (1171)
T TIGR01054 314 --LK-ETLLEIVK---KL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAVAYHATKPK----EDYEKFAE 373 (1171)
T ss_pred --HH-HHHHHHHH---Hc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceEEEEeCCCCH----HHHHHHHc
Confidence 11 12222222 22 35789999999 9999999998765 7899999999973 68899999
Q ss_pred CCceEEEe----ccchhhcCCCCC-eeEEEeCCCccce
Q 003721 555 GGRKVVVA----TNIAEASLTIDG-IFYVIDPGFAKQN 587 (800)
Q Consensus 555 g~~kVLVA----T~iae~GIdip~-v~~VId~g~~k~~ 587 (800)
|+.+|||| |++++||||+|+ |+|||++|+.+.+
T Consensus 374 G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 374 GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred CCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 99999999 599999999999 8999999996654
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.93 E-value=6.3e-24 Score=253.82 Aligned_cols=299 Identities=20% Similarity=0.153 Sum_probs=186.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHHHHHHHHHHHHHH----hC-Cccc
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRVAATSVAKRVAEE----FG-CRLG 363 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~la~qva~rv~~~----~g-~~~g 363 (800)
..+++|..+......+..+||.||||||||.++..++...... ...++++..||+++++++++|+.+. ++ ..++
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~ 365 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLI 365 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 3567888775544457789999999999999987665543211 2358999999999999999998752 22 2222
Q ss_pred ceeeeee---eccc--------------------cc--C----CCceEEEechHHHHHHHhcCC--CCCC----CceEEE
Q 003721 364 EEVGYAI---RFED--------------------CT--G----PDTVIKYMTDGMLLREILIDE--NLSQ----YSVIML 408 (800)
Q Consensus 364 ~~vg~~~---~~~~--------------------~~--~----~~~~I~~~T~g~Ll~~l~~~~--~l~~----~~~IIi 408 (800)
...|... .+.. .. + --..+.++|...++...+... .+.. -++|||
T Consensus 366 L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIi 445 (878)
T PRK09694 366 LAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIV 445 (878)
T ss_pred eecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEE
Confidence 2223211 0000 00 0 125788999887775544322 2232 358999
Q ss_pred eccCcCCCCcc-hHHHHHHHHHhcCCCceEEEeccCCChHH---HhhhhcCC---------CcccCCC----Ccc-----
Q 003721 409 DEAHERTINTD-VLFGLLKQLVKRRPDLRLIVTSATLDAER---FSGYFFNC---------NIFSIPG----RTF----- 466 (800)
Q Consensus 409 DEaHer~~~~d-~l~~~lk~l~~~~~~~kiI~lSATl~~~~---~~~~f~~~---------~~~~i~g----~~~----- 466 (800)
||+|.....+. ++..+++.+.. ...++|+||||++... +.+-+... |.++..+ ..+
T Consensus 446 DEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 446 DEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred echhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 99995443333 34445554433 3567999999998642 33322221 1111110 000
Q ss_pred ------ceeEEeccc--cchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcC
Q 003721 467 ------PVDINYSRQ--EVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYS 538 (800)
Q Consensus 467 ------~v~~~~~~~--~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~ 538 (800)
+..+..... .........+..+.... ..++++|||||+.+.+..+++.|.+.. .+...+..+||
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~v~llHs 595 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVDIDLFHA 595 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCceEEEEeC
Confidence 011111000 00011122333333322 236789999999999999999987641 12357899999
Q ss_pred CCCHHHHH----hhcCcC-CCCC---ceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHH
Q 003721 539 ALPSEIQS----RIFEPA-PPGG---RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQ 610 (800)
Q Consensus 539 ~l~~~~R~----~i~~~f-~~g~---~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~Q 610 (800)
.++..+|. ++++.| ++|+ .+|||||+++|+||||+ ++++|.... | .+.++|
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdla------------------P--idsLiQ 654 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLC------------------P--VDLLFQ 654 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCC------------------C--HHHHHH
Confidence 99999994 456667 6666 47999999999999995 788884433 5 689999
Q ss_pred HhcccCCCC
Q 003721 611 RAGRAGRTG 619 (800)
Q Consensus 611 R~GRaGR~g 619 (800)
|+||+||.+
T Consensus 655 RaGR~~R~~ 663 (878)
T PRK09694 655 RLGRLHRHH 663 (878)
T ss_pred HHhccCCCC
Confidence 999999987
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=5.9e-24 Score=251.45 Aligned_cols=366 Identities=17% Similarity=0.214 Sum_probs=258.4
Q ss_pred CCCCchHHHHHHhhHHHHHHHHHHHHHHHHhhhcCCcccCCCCCCCCCchhhhHHHHHHhhcCCCCCCcchHHHhhhcCC
Q 003721 192 NPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKA 271 (800)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (800)
..+++-+..-+.|+..+++.|++-.++-++.+.++.+-..+.-.. .+..-..-++|.... ...
T Consensus 528 g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~----------------~G~af~~d~~~q~~F-~~~ 590 (1139)
T COG1197 528 GASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAK----------------KGFAFPPDTEWQEEF-EAS 590 (1139)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------cCCCCCCChHHHHHH-Hhc
Confidence 455665667778888888887776666555544432211111011 111112234454443 233
Q ss_pred CCcCcCChhHHHHHHhcCCchHHHHHHHHHHHc----CC--eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHH
Q 003721 272 FTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHD----NQ--VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRV 345 (800)
Q Consensus 272 ~~~~~~~~~~~~~~r~~lPi~~~Q~~~i~~i~~----~~--~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~ 345 (800)
++|.. .+=|..+|+.+.+ ++ |=+|||.-|-|||.++.-++... ...+++|.+++||-.
T Consensus 591 FPyeE---------------T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTl 654 (1139)
T COG1197 591 FPYEE---------------TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTL 654 (1139)
T ss_pred CCCcC---------------CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH-hcCCCeEEEEcccHH
Confidence 44421 2337777877643 33 67999999999999998888876 456789999999999
Q ss_pred HHHHHHHHHHHHhCCcccceeeeeeeccc----------ccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCC
Q 003721 346 AATSVAKRVAEEFGCRLGEEVGYAIRFED----------CTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERT 415 (800)
Q Consensus 346 la~qva~rv~~~~g~~~g~~vg~~~~~~~----------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~ 415 (800)
||.|-++.+.+.|. .....|+.-.||.. ......+|+++|...| ..+..+.+++++||||-|..+
T Consensus 655 LA~QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFG 729 (1139)
T COG1197 655 LAQQHYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFG 729 (1139)
T ss_pred hHHHHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----CCCcEEecCCeEEEechhhcC
Confidence 99999999999882 22223443344433 2346789999998665 345568999999999999655
Q ss_pred CCcchHHHHHHHHHhcCCCceEEEeccCCChHHHhhhhcCC---Ccc-cCCCCccceeEEeccccchhhHHHHHHHHHHH
Q 003721 416 INTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNC---NIF-SIPGRTFPVDINYSRQEVTDYLDSALITVLQI 491 (800)
Q Consensus 416 ~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f~~~---~~~-~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i 491 (800)
+.. -.++...+.++-++-||||+=+..+.--..+. .++ +-|...+||..++.+....-..++. +.-
T Consensus 730 Vk~------KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI----~RE 799 (1139)
T COG1197 730 VKH------KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAI----LRE 799 (1139)
T ss_pred ccH------HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHH----HHH
Confidence 544 33444556789999999999766555444442 223 3455668888887765443222222 222
Q ss_pred hhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCC
Q 003721 492 HVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLT 571 (800)
Q Consensus 492 ~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GId 571 (800)
+ ..+|++-...|..++++.+++.|++. +|+.+|...||.|+..+-+.++..|-+|..+|||||.|.|+|||
T Consensus 800 l--~RgGQvfYv~NrV~~Ie~~~~~L~~L-------VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGID 870 (1139)
T COG1197 800 L--LRGGQVFYVHNRVESIEKKAERLREL-------VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGID 870 (1139)
T ss_pred H--hcCCEEEEEecchhhHHHHHHHHHHh-------CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcC
Confidence 2 23889998999999999999999887 47899999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 572 IDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 572 ip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
||+++.+|--.- . -.-.++..|-.||+||.. .|.||.||.+..
T Consensus 871 IPnANTiIIe~A--------D---------~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 871 IPNANTIIIERA--------D---------KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred CCCCceEEEecc--------c---------cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 999998872111 0 234599999999999999 899999998643
No 94
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=3.3e-24 Score=248.09 Aligned_cols=307 Identities=18% Similarity=0.154 Sum_probs=197.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHh---CCcccceee
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF---GCRLGEEVG 367 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~---g~~~g~~vg 367 (800)
.|+.|.....++.+|+ |..++||+|||+++.++++-..+. +..+.++.|++.||.|.++.+...+ |..+|..+|
T Consensus 57 p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g 133 (745)
T TIGR00963 57 PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILS 133 (745)
T ss_pred ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 3444544444455554 999999999999998888644343 5579999999999999998766544 444444333
Q ss_pred eeeecccccCCCceEEEechHHH-HHHHhcC-------CCCCCCceEEEeccCcCCCCc--------------chHHHHH
Q 003721 368 YAIRFEDCTGPDTVIKYMTDGML-LREILID-------ENLSQYSVIMLDEAHERTINT--------------DVLFGLL 425 (800)
Q Consensus 368 ~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~-------~~l~~~~~IIiDEaHer~~~~--------------d~l~~~l 425 (800)
.....+....-.+.|+|+|++.| .+.+..+ ..++.+.++||||+|...++. +.+....
T Consensus 134 ~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a 213 (745)
T TIGR00963 134 GMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQA 213 (745)
T ss_pred CCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHH
Confidence 22122222233568999999988 5555433 247889999999999532211 0011111
Q ss_pred HHHHhc-CC--------C--------------------------------------------------------------
Q 003721 426 KQLVKR-RP--------D-------------------------------------------------------------- 434 (800)
Q Consensus 426 k~l~~~-~~--------~-------------------------------------------------------------- 434 (800)
..+... .. .
T Consensus 214 ~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD 293 (745)
T TIGR00963 214 NRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVD 293 (745)
T ss_pred HHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEE
Confidence 111100 00 0
Q ss_pred -----------------------------------------------ceEEEeccCCChH--HHhhhhcCCCcccCCCCc
Q 003721 435 -----------------------------------------------LRLIVTSATLDAE--RFSGYFFNCNIFSIPGRT 465 (800)
Q Consensus 435 -----------------------------------------------~kiI~lSATl~~~--~~~~~f~~~~~~~i~g~~ 465 (800)
.++.+||.|...+ .|... .+.+++.+|...
T Consensus 294 ~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i-Y~l~vv~IPtnk 372 (745)
T TIGR00963 294 EFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKI-YNLEVVVVPTNR 372 (745)
T ss_pred CCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHH-hCCCEEEeCCCC
Confidence 1223333333211 11111 122222222211
Q ss_pred cceeEEeccc---cchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCH
Q 003721 466 FPVDINYSRQ---EVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPS 542 (800)
Q Consensus 466 ~~v~~~~~~~---~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~ 542 (800)
......+... ...+...+.+..+...|. .+.++||||++.+.++.++..|.+. ++....+||. +
T Consensus 373 p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~Lna~--q 439 (745)
T TIGR00963 373 PVIRKDLSDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHNVLNAK--N 439 (745)
T ss_pred CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEEeeCC--h
Confidence 1111110000 011122233344444443 3778999999999999999999876 7778889998 7
Q ss_pred HHHHhhcCcCCCCCceEEEeccchhhcCCCCC-------eeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhccc
Q 003721 543 EIQSRIFEPAPPGGRKVVVATNIAEASLTIDG-------IFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRA 615 (800)
Q Consensus 543 ~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~-------v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRa 615 (800)
.+|+..+..|+.+...|+||||+|+||+||+. ..+||++.+ |.|...+.||.|||
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q~~GRt 501 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQLRGRS 501 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHHHhccc
Confidence 88999999999999999999999999999998 559999999 99999999999999
Q ss_pred CCCC-CCeEEEccChHHh
Q 003721 616 GRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 616 GR~g-~G~~~~L~t~~~~ 632 (800)
||.| ||.+..+.+.++.
T Consensus 502 GRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 502 GRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred cCCCCCcceEEEEeccHH
Confidence 9999 9999988886553
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.4e-24 Score=248.87 Aligned_cols=298 Identities=17% Similarity=0.230 Sum_probs=190.5
Q ss_pred EEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeee------cccccCCCceE
Q 003721 309 ILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIR------FEDCTGPDTVI 382 (800)
Q Consensus 309 iv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~------~~~~~~~~~~I 382 (800)
++.||||||||.++...+.+. +..++++++++|+++|+.|+++++.+.++..+....+.... +.........|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 478999999999987665544 56677999999999999999999999887655433331111 11122345789
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchH----HHHHHHHHhcCCCceEEEeccCCChHHHhhhhcCC-C
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVL----FGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNC-N 457 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l----~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f~~~-~ 457 (800)
+++|...+. ..+.++++|||||+|+-+...+-. ..-+........+.++|++|||++.+.+.....+. .
T Consensus 80 VVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~ 153 (505)
T TIGR00595 80 VIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYR 153 (505)
T ss_pred EECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeE
Confidence 999988663 247889999999999755443211 01122233445688999999999887666543221 1
Q ss_pred cccC----CCCccc-eeEEeccc-cchhhHH-HHHHHHHHHhhcCCCCCEEEEcCCHHH---------------------
Q 003721 458 IFSI----PGRTFP-VDINYSRQ-EVTDYLD-SALITVLQIHVDEPEGDILLFLTGQEE--------------------- 509 (800)
Q Consensus 458 ~~~i----~g~~~~-v~~~~~~~-~~~~~~~-~~l~~v~~i~~~~~~g~iLVF~~s~~~--------------------- 509 (800)
.... .+...| +.+.-... .....+. ..+..+.+... .++++|||+|++..
T Consensus 154 ~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~ 231 (505)
T TIGR00595 154 LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVS 231 (505)
T ss_pred EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCc
Confidence 1222 122222 22211111 1111122 22223322222 25689999887754
Q ss_pred ---------------------------------------HHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHH--Hhh
Q 003721 510 ---------------------------------------IDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQ--SRI 548 (800)
Q Consensus 510 ---------------------------------------i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R--~~i 548 (800)
++.+.+.|.+. .|+..+..+|++++...+ +.+
T Consensus 232 l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-------fp~~~v~~~d~d~~~~~~~~~~~ 304 (505)
T TIGR00595 232 LTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-------FPGARIARIDSDTTSRKGAHEAL 304 (505)
T ss_pred eEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-------CCCCcEEEEecccccCccHHHHH
Confidence 23333333332 457789999999987665 889
Q ss_pred cCcCCCCCceEEEeccchhhcCCCCCeeEEE--eCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEE-
Q 003721 549 FEPAPPGGRKVVVATNIAEASLTIDGIFYVI--DPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCY- 624 (800)
Q Consensus 549 ~~~f~~g~~kVLVAT~iae~GIdip~v~~VI--d~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~- 624 (800)
++.|++|+.+|||+|++++.|+|+|+|+.|+ |.+. ......+...-.....+.|++|||||.+ +|.++
T Consensus 305 l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~--------~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 305 LNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS--------GLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred HHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc--------cccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 9999999999999999999999999999885 4443 1111111112234678999999999988 78887
Q ss_pred EccChH
Q 003721 625 RLYTES 630 (800)
Q Consensus 625 ~L~t~~ 630 (800)
..|.++
T Consensus 377 qt~~p~ 382 (505)
T TIGR00595 377 QTYNPN 382 (505)
T ss_pred EeCCCC
Confidence 344443
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=2.4e-23 Score=235.89 Aligned_cols=292 Identities=20% Similarity=0.214 Sum_probs=198.8
Q ss_pred HhcCCchHHHHHHHHHHHc----CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 286 RRSLPIFKLKNELIQAVHD----NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~----~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
.....++++|+++++++.. ++..++++|||+|||..+...+.+. ..+++|++|+++|+.|.++++.+.++..
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 3455688999999999888 8999999999999999887777665 3349999999999999998887777653
Q ss_pred --ccceeeeeeecccccCCCceEEEechHHHHHH-HhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEE
Q 003721 362 --LGEEVGYAIRFEDCTGPDTVIKYMTDGMLLRE-ILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLI 438 (800)
Q Consensus 362 --~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~-l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI 438 (800)
.|..-|. .....+ ..|.|.|...+.+. .+......++++||+||||. +..+....+...+...++ ++
T Consensus 108 ~~~g~~~~~----~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh--~~a~~~~~~~~~~~~~~~---~L 177 (442)
T COG1061 108 DEIGIYGGG----EKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH--LPAPSYRRILELLSAAYP---RL 177 (442)
T ss_pred cccceecCc----eeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc--CCcHHHHHHHHhhhcccc---ee
Confidence 2221111 111112 56999999998886 33333445899999999993 333333333444333222 89
Q ss_pred EeccCCChHH---Hhh--hhcCCCcccCC-------CCccceeEEeccc-----cchhhH--------------------
Q 003721 439 VTSATLDAER---FSG--YFFNCNIFSIP-------GRTFPVDINYSRQ-----EVTDYL-------------------- 481 (800)
Q Consensus 439 ~lSATl~~~~---~~~--~f~~~~~~~i~-------g~~~~v~~~~~~~-----~~~~~~-------------------- 481 (800)
+||||+...+ ... +..+..++.++ |..-|........ ....+.
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 9999985321 111 11221122221 2222222221111 000000
Q ss_pred ---------HHHHHHHHHHhhcC-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCc
Q 003721 482 ---------DSALITVLQIHVDE-PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEP 551 (800)
Q Consensus 482 ---------~~~l~~v~~i~~~~-~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~ 551 (800)
...+..+..+.... ...+++||+.+..++..++..+... +. +..+.|..+..+|..+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEEREAILER 327 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHHHHHHH
Confidence 00111111222211 3568999999999999998877542 34 7789999999999999999
Q ss_pred CCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC
Q 003721 552 APPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG 619 (800)
Q Consensus 552 f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g 619 (800)
|+.|.+++||++.++..|+|+|+++++|-..- ..|...|.||+||.-|..
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhccCC
Confidence 99999999999999999999999999995444 789999999999999954
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=241.21 Aligned_cols=333 Identities=18% Similarity=0.208 Sum_probs=234.7
Q ss_pred HHHhcCCchHHHHHHHH--HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 284 EQRRSLPIFKLKNELIQ--AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 284 ~~r~~lPi~~~Q~~~i~--~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
+...-+..|.+|.+++. .++++++.|..+||+.|||+++...++...+..+..++.+.|....+.+-...++. +.+.
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~ 295 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSID 295 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccc
Confidence 34445667899999875 47899999999999999999999988888777788888888988877776655433 2334
Q ss_pred cccee-eeeeecccc-cCCCceEEEechH---HHHHHHhcCCCCCCCceEEEeccCcCCCCcc---hHHHHHHHHHhc--
Q 003721 362 LGEEV-GYAIRFEDC-TGPDTVIKYMTDG---MLLREILIDENLSQYSVIMLDEAHERTINTD---VLFGLLKQLVKR-- 431 (800)
Q Consensus 362 ~g~~v-g~~~~~~~~-~~~~~~I~~~T~g---~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~~~-- 431 (800)
+|-.| +|.-++... ......+.++|.+ .|.+.+.....+..++.|||||.|- ..+.+ .+..++.+++-.
T Consensus 296 ~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm-i~d~~rg~~lE~~l~k~~y~~~ 374 (1008)
T KOG0950|consen 296 LGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM-IGDKGRGAILELLLAKILYENL 374 (1008)
T ss_pred cCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee-eeccccchHHHHHHHHHHHhcc
Confidence 44333 243222222 1245678888887 4666677777789999999999993 22211 455556655543
Q ss_pred CCCceEEEeccCCChHHHhhhhcCCCcccCCCCccceeEEeccccchhh--HHHHHHHHHH----Hhh------------
Q 003721 432 RPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDY--LDSALITVLQ----IHV------------ 493 (800)
Q Consensus 432 ~~~~kiI~lSATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~~~~~~~~--~~~~l~~v~~----i~~------------ 493 (800)
...+++|+||||+++....+.|+++.++....|+.|+..+.......-. ....+..+-. ...
T Consensus 375 ~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~t 454 (1008)
T KOG0950|consen 375 ETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCT 454 (1008)
T ss_pred ccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehh
Confidence 2347799999999988777777787777766676665544322211100 0111111110 000
Q ss_pred -cCC-CCCEEEEcCCHHHHHHHHHHHHHHHHhh-------C----------------------CCCCCeEEEEEcCCCCH
Q 003721 494 -DEP-EGDILLFLTGQEEIDFACESLCEKIKAL-------G----------------------KDVPELVVLPVYSALPS 542 (800)
Q Consensus 494 -~~~-~g~iLVF~~s~~~i~~l~~~L~~~l~~~-------~----------------------~~~~~~~v~~lh~~l~~ 542 (800)
.-+ +..+||||++++.|+.++..+...+... + ...-...+..||+|++.
T Consensus 455 et~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~ 534 (1008)
T KOG0950|consen 455 ETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTS 534 (1008)
T ss_pred hhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceeccccccc
Confidence 011 2349999999999999998776544210 0 01124568899999999
Q ss_pred HHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---
Q 003721 543 EIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG--- 619 (800)
Q Consensus 543 ~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g--- 619 (800)
++|+.|...|++|...|++||++++.|+|+|..+++|-.-+ ......+..+|.||+|||||+|
T Consensus 535 eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT 600 (1008)
T KOG0950|consen 535 EEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDT 600 (1008)
T ss_pred chHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhccccc
Confidence 99999999999999999999999999999999999995544 2334688899999999999999
Q ss_pred CCeEEEccChHHh
Q 003721 620 PGKCYRLYTESAY 632 (800)
Q Consensus 620 ~G~~~~L~t~~~~ 632 (800)
-|.++..+.+.+.
T Consensus 601 ~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 601 LGDSILIIKSSEK 613 (1008)
T ss_pred CcceEEEeeccch
Confidence 6999999987663
No 98
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=3e-23 Score=233.83 Aligned_cols=314 Identities=18% Similarity=0.230 Sum_probs=223.9
Q ss_pred HHHHHHhcCC--chHHHHHHHHHHHcC------CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHH
Q 003721 281 SIQEQRRSLP--IFKLKNELIQAVHDN------QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAK 352 (800)
Q Consensus 281 ~~~~~r~~lP--i~~~Q~~~i~~i~~~------~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~ 352 (800)
-+.+....|| +...|.+++.-|... -+=++.|.-|||||.++.+.++.. ...|.++...+||-.||.|.+.
T Consensus 251 l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 251 LLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYE 329 (677)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHH
Confidence 3455556666 788999999988653 145899999999999998888876 6678899999999999999998
Q ss_pred HHHHHh---CCcccceeeeee------ecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHH
Q 003721 353 RVAEEF---GCRLGEEVGYAI------RFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFG 423 (800)
Q Consensus 353 rv~~~~---g~~~g~~vg~~~------~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~ 423 (800)
.+.+.+ |..++-.+|... ..+...+....|++.|...+.+ +-.+.++.+||+||=|..+...
T Consensus 330 ~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd----~V~F~~LgLVIiDEQHRFGV~Q----- 400 (677)
T COG1200 330 SLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD----KVEFHNLGLVIIDEQHRFGVHQ----- 400 (677)
T ss_pred HHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc----ceeecceeEEEEeccccccHHH-----
Confidence 887765 455554444211 1123345778999999887644 3468899999999999544332
Q ss_pred HHHHHHhcCC-CceEEEeccCCChHHHh-hhhcCCCcc---cCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCC
Q 003721 424 LLKQLVKRRP-DLRLIVTSATLDAERFS-GYFFNCNIF---SIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEG 498 (800)
Q Consensus 424 ~lk~l~~~~~-~~kiI~lSATl~~~~~~-~~f~~~~~~---~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g 498 (800)
-..+..... .+.+++||||+-+..++ ..|++..+- ..|.-..|+.....+....+. .+..+..-.. .+.
T Consensus 401 -R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~---v~e~i~~ei~--~Gr 474 (677)
T COG1200 401 -RLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE---VYERIREEIA--KGR 474 (677)
T ss_pred -HHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHH---HHHHHHHHHH--cCC
Confidence 222333334 56789999999665444 445554332 333333577666665543332 2223332222 367
Q ss_pred CEEEEcCCHHHHHH----HHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCC
Q 003721 499 DILLFLTGQEEIDF----ACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDG 574 (800)
Q Consensus 499 ~iLVF~~s~~~i~~----l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~ 574 (800)
++.|.||-.++.+. .+..+.+.++ ...+++.+..+||.|++++++.|++.|++|+.+|||||++.|.|||+|+
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~---~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPn 551 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELK---SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPN 551 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHH---HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCC
Confidence 89999998776652 2223333332 2345888999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChH
Q 003721 575 IFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTES 630 (800)
Q Consensus 575 v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~ 630 (800)
.++.| ++|+. -.-.++.-|-.||+||.+ ...|+.+|.+.
T Consensus 552 ATvMV--------Ie~AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 552 ATVMV--------IENAE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred CeEEE--------Eechh---------hhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 99877 33332 234689999999999999 89999999854
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=1.3e-22 Score=249.23 Aligned_cols=315 Identities=19% Similarity=0.241 Sum_probs=201.9
Q ss_pred CCchHHHHHHHHHHH-----cCCeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 003721 289 LPIFKLKNELIQAVH-----DNQVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRVAATSVAKRVAEEFGCRL 362 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~-----~~~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~la~qva~rv~~~~g~~~ 362 (800)
+.++++|.++++++. ..+..+++++||||||..+...+...... ..++|++++||++|+.|..+.+... +...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 456889999998764 24679999999999997765544433211 2359999999999999999887653 2111
Q ss_pred cceee--eeee--cccccCCCceEEEechHHHHHHHhcC------CCCCCCceEEEeccCcCCCCcch------------
Q 003721 363 GEEVG--YAIR--FEDCTGPDTVIKYMTDGMLLREILID------ENLSQYSVIMLDEAHERTINTDV------------ 420 (800)
Q Consensus 363 g~~vg--~~~~--~~~~~~~~~~I~~~T~g~Ll~~l~~~------~~l~~~~~IIiDEaHer~~~~d~------------ 420 (800)
+..+. |.+. .+........|+++|...+.+.+... ..+..+++||+|||| |+...+-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 11000 1111 11112345789999999887765321 347889999999999 7642110
Q ss_pred --HHHHHHHHHhcCCCceEEEeccCCChHHHhhhhcCCCcccC-------CCCcc----ceeEE---------eccc---
Q 003721 421 --LFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSI-------PGRTF----PVDIN---------YSRQ--- 475 (800)
Q Consensus 421 --l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f~~~~~~~i-------~g~~~----~v~~~---------~~~~--- 475 (800)
....++.+... .+...|+||||+... ...+|+. |++.. .|... |..+. +...
T Consensus 570 ~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 570 LDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 12334444443 356789999999642 2344542 33111 11111 11110 0000
Q ss_pred ---------------cc-hhhHH--------------HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 003721 476 ---------------EV-TDYLD--------------SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALG 525 (800)
Q Consensus 476 ---------------~~-~~~~~--------------~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~ 525 (800)
+. ..+.. ..+..++.......++++||||.++++++.+++.|.+.+....
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 00 00000 0111222222223458999999999999999999988765442
Q ss_pred CCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCc-eEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccC
Q 003721 526 KDVPELVVLPVYSALPSEIQSRIFEPAPPGGR-KVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPIS 604 (800)
Q Consensus 526 ~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~-kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S 604 (800)
+......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||.... +.|
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp------------------vkS 786 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR------------------VRS 786 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC------------------CCC
Confidence 2233345666888875 46779999999876 79999999999999999999996655 899
Q ss_pred HHhHHHHhcccCCCCC--Ce-EEEccC
Q 003721 605 QASALQRAGRAGRTGP--GK-CYRLYT 628 (800)
Q Consensus 605 ~~~~~QR~GRaGR~g~--G~-~~~L~t 628 (800)
...|.||+||+.|..+ |+ ++.++.
T Consensus 787 ~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 787 RILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHHhhhccCCccCCCceEEEEe
Confidence 9999999999999986 54 455555
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=1.2e-20 Score=227.14 Aligned_cols=312 Identities=15% Similarity=0.145 Sum_probs=200.2
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHHHHHHHHHHHHHhCCcccce
Q 003721 289 LPIFKLKNELIQAVHD--NQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVAATSVAKRVAEEFGCRLGEE 365 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~--~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~la~qva~rv~~~~g~~~g~~ 365 (800)
.-+++||..++..+.. ...+++.-++|.|||.++...+.+..... .++++|++|. .|..|....+.+.|+......
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 4467899988877644 34789999999999999877776653332 3589999998 778888888877776543211
Q ss_pred ee--ee-eeccc-ccCCCceEEEechHHHHHH--HhcCCCCCCCceEEEeccCcCCCC----cchHHHHHHHHHhcCCCc
Q 003721 366 VG--YA-IRFED-CTGPDTVIKYMTDGMLLRE--ILIDENLSQYSVIMLDEAHERTIN----TDVLFGLLKQLVKRRPDL 435 (800)
Q Consensus 366 vg--~~-~~~~~-~~~~~~~I~~~T~g~Ll~~--l~~~~~l~~~~~IIiDEaHer~~~----~d~l~~~lk~l~~~~~~~ 435 (800)
-+ +. ..... ..-....+++++.+.+.+. ......-..+++||+||||. .-+ ..-....+..+.... .
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~-lk~~~~~~s~~y~~v~~La~~~--~ 306 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH-LVWSEEAPSREYQVVEQLAEVI--P 306 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh-hccCCCCcCHHHHHHHHHhhcc--C
Confidence 11 00 00000 0112356888888887652 11112235799999999994 221 112233444443322 3
Q ss_pred eEEEeccCCCh---H------------------HHhhhh--------------cCCCc-----------cc---------
Q 003721 436 RLIVTSATLDA---E------------------RFSGYF--------------FNCNI-----------FS--------- 460 (800)
Q Consensus 436 kiI~lSATl~~---~------------------~~~~~f--------------~~~~~-----------~~--------- 460 (800)
.++++|||+-. + .|...+ .+.+. +.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 57999999842 1 111100 00000 00
Q ss_pred ------------------------CCC-----------CccceeEEec--cccchhhH----------------------
Q 003721 461 ------------------------IPG-----------RTFPVDINYS--RQEVTDYL---------------------- 481 (800)
Q Consensus 461 ------------------------i~g-----------~~~~v~~~~~--~~~~~~~~---------------------- 481 (800)
-.| ..+|...... ......|.
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 000 0011000000 00000111
Q ss_pred -----------HHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcC
Q 003721 482 -----------DSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFE 550 (800)
Q Consensus 482 -----------~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~ 550 (800)
+.++..+..+.....+.++||||+++..+..+++.|.... ++.+..+||+|+..+|.++++
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~--------Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRERE--------GIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc--------CeeEEEEECCCCHHHHHHHHH
Confidence 0122234444444457789999999999999999985431 788999999999999999999
Q ss_pred cCCCC--CceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CC--eEEE
Q 003721 551 PAPPG--GRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PG--KCYR 625 (800)
Q Consensus 551 ~f~~g--~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G--~~~~ 625 (800)
.|+++ ..+|||||+++++|+|++.+++||++++ |.++..|.||+||+||.| .| .+|.
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99874 6999999999999999999999999999 999999999999999999 44 4566
Q ss_pred ccChH
Q 003721 626 LYTES 630 (800)
Q Consensus 626 L~t~~ 630 (800)
++.+.
T Consensus 601 ~~~~~ 605 (956)
T PRK04914 601 PYLEG 605 (956)
T ss_pred ccCCC
Confidence 66543
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.5e-19 Score=212.21 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=91.7
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHh---CC
Q 003721 284 EQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF---GC 360 (800)
Q Consensus 284 ~~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~---g~ 360 (800)
..|+.|-++++-.|++-.+.=++--|..++||+|||+++.++++...+. +..+.++.|++.||.|.+..+...+ |.
T Consensus 74 a~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 74 VSLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred HHHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 3455677777777788776555556899999999999999999976554 4568999999999999998776554 33
Q ss_pred cccceeeeeeecccccCCCceEEEechHHH-HHHHhcCCC-------CCCCceEEEeccCc
Q 003721 361 RLGEEVGYAIRFEDCTGPDTVIKYMTDGML-LREILIDEN-------LSQYSVIMLDEAHE 413 (800)
Q Consensus 361 ~~g~~vg~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~~~-------l~~~~~IIiDEaHe 413 (800)
.+|..+|..........-.+.|+|+||+.| .+.+..+.. ...+.++||||||.
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 433333321111111223578999999999 666654422 25899999999995
No 102
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.2e-20 Score=187.16 Aligned_cols=273 Identities=16% Similarity=0.178 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC--eEEEecchHHHHHHHHHH---HHHHh-CCccccee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG--KIGCTQPRRVAATSVAKR---VAEEF-GCRLGEEV 366 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~--~il~~~P~r~la~qva~r---v~~~~-g~~~g~~v 366 (800)
..|.++|+...-|-+++..|..|-|||..+.+.-++..-.-.| .+++++.+|+||.|+.+. +++.+ +.++....
T Consensus 67 evqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFf 146 (387)
T KOG0329|consen 67 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 146 (387)
T ss_pred HhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 5699999998889999999999999999988888776544444 688999999999998865 44444 23332222
Q ss_pred e-eeeecc-cccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 367 G-YAIRFE-DCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 367 g-~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
| ..+..+ ........|+++|||+++....+.. .++++.+.|+||++...-..|....+-........+-|++.+|||
T Consensus 147 GG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329|consen 147 GGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred cceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeee
Confidence 2 222221 1223367899999999999886655 599999999999995333444554544444455567899999999
Q ss_pred CChH--HHhhhhcCCCcccCCCCc-----cceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 003721 444 LDAE--RFSGYFFNCNIFSIPGRT-----FPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACES 516 (800)
Q Consensus 444 l~~~--~~~~~f~~~~~~~i~g~~-----~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~ 516 (800)
++.+ .....|...|.-..-... +-+..+|.+.... .+-..+.++.....-.+++||+.+...+.
T Consensus 227 lskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~----eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~----- 297 (387)
T KOG0329|consen 227 LSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN----EKNRKLNDLLDVLEFNQVVIFVKSVQRLS----- 297 (387)
T ss_pred cchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh----hhhhhhhhhhhhhhhcceeEeeehhhhhh-----
Confidence 9764 333444433321111000 1111111111110 01111222222223456777776543200
Q ss_pred HHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcc
Q 003721 517 LCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLD 596 (800)
Q Consensus 517 L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~ 596 (800)
| .+ + +|||+++++|+||..|+.|+||++
T Consensus 298 -----------------------------------f--~k-r-~vat~lfgrgmdiervNi~~NYdm------------- 325 (387)
T KOG0329|consen 298 -----------------------------------F--QK-R-LVATDLFGRGMDIERVNIVFNYDM------------- 325 (387)
T ss_pred -----------------------------------h--hh-h-hHHhhhhccccCcccceeeeccCC-------------
Confidence 1 12 2 899999999999999999999999
Q ss_pred cccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 597 SLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 597 ~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
|-+..+|.||.|||||.| .|.++.+.+...
T Consensus 326 -----p~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 326 -----PEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred -----CCCchHHHHHhhhhhccccccceeehhcchh
Confidence 999999999999999999 899999887543
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.84 E-value=7.9e-20 Score=219.08 Aligned_cols=305 Identities=21% Similarity=0.203 Sum_probs=186.1
Q ss_pred CchHHHHHHHHHHHc---CC-eEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHHHHHhCCc-
Q 003721 290 PIFKLKNELIQAVHD---NQ-VLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRVAEEFGCR- 361 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~---~~-~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv~~~~g~~- 361 (800)
+.++.|..+++.+.. .+ .+++.||||+|||++.+.+....... ...+++++.|+|.++.++++++.+.++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 346778888877643 35 89999999999999988777765433 36699999999999999999998765432
Q ss_pred -ccc-eeeeee-----eccc---c--cC--C----CceEEEechHHHHHHHhcCCCC-----CCCceEEEeccCcCCCCc
Q 003721 362 -LGE-EVGYAI-----RFED---C--TG--P----DTVIKYMTDGMLLREILIDENL-----SQYSVIMLDEAHERTINT 418 (800)
Q Consensus 362 -~g~-~vg~~~-----~~~~---~--~~--~----~~~I~~~T~g~Ll~~l~~~~~l-----~~~~~IIiDEaHer~~~~ 418 (800)
.+. ..|... ..+. + +. . -..+.++|+-............ -..+++|+||+| ++..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h--~~~~ 352 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH--LYAD 352 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH--hhcc
Confidence 222 122111 0000 0 00 0 0011122222222211111111 234789999999 4444
Q ss_pred c----hHHHHHHHHHhcCCCceEEEeccCCChH---HHhhhhcCCCcccCCCCccceeE--EeccccchhhHHHH--HHH
Q 003721 419 D----VLFGLLKQLVKRRPDLRLIVTSATLDAE---RFSGYFFNCNIFSIPGRTFPVDI--NYSRQEVTDYLDSA--LIT 487 (800)
Q Consensus 419 d----~l~~~lk~l~~~~~~~kiI~lSATl~~~---~~~~~f~~~~~~~i~g~~~~v~~--~~~~~~~~~~~~~~--l~~ 487 (800)
+ ++.+++..+.. -+.++|+||||+|.. .+..++.....+.......+... ........+..+.. ...
T Consensus 353 ~~~~~~l~~~i~~l~~--~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 353 ETMLAALLALLEALAE--AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cchHHHHHHHHHHHHh--CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 4 33344433332 477899999999964 44444443222221111000000 00000001111110 001
Q ss_pred HHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcC----CCCCceEEEec
Q 003721 488 VLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPA----PPGGRKVVVAT 563 (800)
Q Consensus 488 v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f----~~g~~kVLVAT 563 (800)
.........+++++|.|||...|..+++.|++. +..+..+||.+...+|.+.++.. ..+...|+|||
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~---------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaT 501 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK---------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVAT 501 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhc---------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEe
Confidence 111112234688999999999999999999876 22799999999999999887742 45788999999
Q ss_pred cchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccC
Q 003721 564 NIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYT 628 (800)
Q Consensus 564 ~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t 628 (800)
++.|.|+|++ .+++| +.+.+..+.+||+||++|.| +|..|..-.
T Consensus 502 QVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 502 QVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred eEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 9999999997 44444 55788999999999999999 566655443
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.2e-19 Score=212.01 Aligned_cols=107 Identities=22% Similarity=0.203 Sum_probs=97.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCC---
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTI--- 572 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdi--- 572 (800)
.+.++||||++...++.++..|.+. ++....+|+.+...++..+.+.+++|. |+||||+|+||.||
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~ 507 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLG 507 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCC
Confidence 4778999999999999999999876 677889999999888888988888887 99999999999999
Q ss_pred CCee-----EEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHH
Q 003721 573 DGIF-----YVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESA 631 (800)
Q Consensus 573 p~v~-----~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~ 631 (800)
++|. +||++.+ |.|...+.|+.|||||.| ||.+..+++.+|
T Consensus 508 ~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 508 PGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred cchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 4899 9999999 999999999999999999 999988888654
No 105
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=2.7e-19 Score=204.33 Aligned_cols=337 Identities=17% Similarity=0.153 Sum_probs=214.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhc-cCCCeEEEecchHHHHHHHHHHHHHHhCCcc---cc
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGY-TTKGKIGCTQPRRVAATSVAKRVAEEFGCRL---GE 364 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~-~~~~~il~~~P~r~la~qva~rv~~~~g~~~---g~ 364 (800)
+-...+|.+.+..+..+..++|+|||.+|||.+-+..+-.... ...+-+++++|+++|+.|++..+...+.... |.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 4456899999999999999999999999999776544433322 2456889999999999999988877763221 11
Q ss_pred e-eeeeeecccccCCCceEEEechHHHHHHHhcC----CCCCCCceEEEeccCcCCCCcc--hHHHHHHHHHhcCCCceE
Q 003721 365 E-VGYAIRFEDCTGPDTVIKYMTDGMLLREILID----ENLSQYSVIMLDEAHERTINTD--VLFGLLKQLVKRRPDLRL 437 (800)
Q Consensus 365 ~-vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~----~~l~~~~~IIiDEaHer~~~~d--~l~~~lk~l~~~~~~~ki 437 (800)
. .|.-.+.-....-++.|.++-|+.+-..++.. .+..++.+||+||+|.-+-..| +++.++- .-.+++
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~-----li~CP~ 664 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL-----LIPCPF 664 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH-----hcCCCe
Confidence 1 11000000111236889999999988877664 3688999999999995332222 2222222 235789
Q ss_pred EEeccCCChH-HHhhhhc--------CCCcccCCC----------------Cccc-------------e-----------
Q 003721 438 IVTSATLDAE-RFSGYFF--------NCNIFSIPG----------------RTFP-------------V----------- 468 (800)
Q Consensus 438 I~lSATl~~~-~~~~~f~--------~~~~~~i~g----------------~~~~-------------v----------- 468 (800)
+++|||+.+. .+..|.. ++..+.... ..++ +
T Consensus 665 L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd 744 (1330)
T KOG0949|consen 665 LVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDD 744 (1330)
T ss_pred eEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCC
Confidence 9999999654 4444332 011110000 0000 0
Q ss_pred -e-EEecc---------------ccch-----------------------------------------------------
Q 003721 469 -D-INYSR---------------QEVT----------------------------------------------------- 478 (800)
Q Consensus 469 -~-~~~~~---------------~~~~----------------------------------------------------- 478 (800)
. ..+.+ ....
T Consensus 745 ~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle 824 (1330)
T KOG0949|consen 745 NVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLE 824 (1330)
T ss_pred ceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhh
Confidence 0 00000 0000
Q ss_pred -------hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHh----------------------------
Q 003721 479 -------DYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKA---------------------------- 523 (800)
Q Consensus 479 -------~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~---------------------------- 523 (800)
+++...+..++........-+.|+|-..+..|+.++..+...+..
T Consensus 825 ~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~ 904 (1330)
T KOG0949|consen 825 SVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTK 904 (1330)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111122222333567899999998888876654332200
Q ss_pred --------------------------------------------hCCCCC-------CeEEEEEcCCCCHHHHHhhcCcC
Q 003721 524 --------------------------------------------LGKDVP-------ELVVLPVYSALPSEIQSRIFEPA 552 (800)
Q Consensus 524 --------------------------------------------~~~~~~-------~~~v~~lh~~l~~~~R~~i~~~f 552 (800)
...+.+ .-.+..||+||...+|..++-.|
T Consensus 905 e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLF 984 (1330)
T KOG0949|consen 905 ESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLF 984 (1330)
T ss_pred HHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 000000 01377899999999999999999
Q ss_pred CCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccCh
Q 003721 553 PPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTE 629 (800)
Q Consensus 553 ~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~ 629 (800)
+.|...||+||.+++.|||.|.-++|+ +.|+|+.. +-+|.|++|||||.| -|.+..+--+
T Consensus 985 R~g~L~VlfaT~TLsLGiNMPCrTVvF--------------~gDsLQL~---plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 985 RQGHLQVLFATETLSLGINMPCRTVVF--------------AGDSLQLD---PLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred hcCceEEEEEeeehhcccCCCceeEEE--------------eccccccC---chhHHhhhccccccccccccceEEEeCc
Confidence 999999999999999999999888887 33445544 468999999999999 6877777655
Q ss_pred HHhhhhCCCCCCcchhcc
Q 003721 630 SAYRSEMSPTTIPEIQRI 647 (800)
Q Consensus 630 ~~~~~~~~~~~~pei~r~ 647 (800)
...-..+.....|.||-.
T Consensus 1048 ~~kv~rLlts~L~diqG~ 1065 (1330)
T KOG0949|consen 1048 RQKVQRLLTSLLPDIQGA 1065 (1330)
T ss_pred HHHHHHHHHHhhhcccCC
Confidence 554445777778888764
No 106
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=4.3e-20 Score=194.61 Aligned_cols=269 Identities=19% Similarity=0.211 Sum_probs=174.6
Q ss_pred eEEEecchHHHHHHHHHHHHHHh---C-Cccc--ceee-eeeecc-cccCCCceEEEechHHHHHHHhcCC-CCCCCceE
Q 003721 336 KIGCTQPRRVAATSVAKRVAEEF---G-CRLG--EEVG-YAIRFE-DCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVI 406 (800)
Q Consensus 336 ~il~~~P~r~la~qva~rv~~~~---g-~~~g--~~vg-~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~I 406 (800)
..+++.|.|+||.|....+.+.- . -.+- ..+| ...+.. .....++.|++.|||++++.+.... .+.++.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 67899999999999988664321 1 0010 1122 111111 1224678999999999999876544 58899999
Q ss_pred EEeccCcCC--CCcchHHHHHHHHHhc---CCCceEEEeccCCCh---HHHhhhhcCCCc-ccCCCC-ccceeEEec---
Q 003721 407 MLDEAHERT--INTDVLFGLLKQLVKR---RPDLRLIVTSATLDA---ERFSGYFFNCNI-FSIPGR-TFPVDINYS--- 473 (800)
Q Consensus 407 IiDEaHer~--~~~d~l~~~lk~l~~~---~~~~kiI~lSATl~~---~~~~~~f~~~~~-~~i~g~-~~~v~~~~~--- 473 (800)
++||++... .++|++..+-..+... -..++.++.|||+.. .+..+.....|. +...|. ..|-+++..
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 999999321 2334443333333332 235789999999953 233322222111 000000 000000000
Q ss_pred -------------------cccchhhH------HHHHHHHHHHh---------hcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 003721 474 -------------------RQEVTDYL------DSALITVLQIH---------VDEPEGDILLFLTGQEEIDFACESLCE 519 (800)
Q Consensus 474 -------------------~~~~~~~~------~~~l~~v~~i~---------~~~~~g~iLVF~~s~~~i~~l~~~L~~ 519 (800)
..+..+++ .........|. ......+.||||.++.+|+.+-+++.+
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 00000000 00001111111 122356799999999999998888876
Q ss_pred HHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCccccc
Q 003721 520 KIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLV 599 (800)
Q Consensus 520 ~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~ 599 (800)
+ + ...+.+..+||+..+.+|..-++.|+.+..+.||||++|++|+||.++-++||..+
T Consensus 528 k----g--g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl---------------- 585 (725)
T KOG0349|consen 528 K----G--GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL---------------- 585 (725)
T ss_pred c----C--CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec----------------
Confidence 5 2 23688999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHhHHHHhcccCCCC-CCeEEEccC
Q 003721 600 ITPISQASALQRAGRAGRTG-PGKCYRLYT 628 (800)
Q Consensus 600 ~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t 628 (800)
|-...+|+||+||+||.. -|.++.|..
T Consensus 586 --pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 586 --PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred --CcccchhhhhhhccchhhhcceeEEEee
Confidence 999999999999999998 788887764
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.1e-18 Score=204.89 Aligned_cols=329 Identities=17% Similarity=0.129 Sum_probs=190.4
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHh---CCcc
Q 003721 286 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF---GCRL 362 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~---g~~~ 362 (800)
++.+-++++-.|++-.+.=++--|..+.||+|||.++.++++-..+. +..+-++.|++.||.+.+..+...+ |..+
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv 153 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSV 153 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeE
Confidence 33444444455566654333445999999999999998888644343 4467799999999999888766544 5555
Q ss_pred cceeeeeeecccccCCCceEEEechHHH-HHHHhcCC-------CCCCCceEEEeccCcCCCCcc--------------h
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGML-LREILIDE-------NLSQYSVIMLDEAHERTINTD--------------V 420 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~~-------~l~~~~~IIiDEaHer~~~~d--------------~ 420 (800)
|..+|.....+....-.+.|+|+|++.| .+.+.... .+..+.++|||||+...++.. -
T Consensus 154 ~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~ 233 (830)
T PRK12904 154 GVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE 233 (830)
T ss_pred EEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccH
Confidence 5444422111222223478999999999 66654332 267889999999995222110 0
Q ss_pred HHHHHHHHHh-cCC--------C---------------------------------------------------------
Q 003721 421 LFGLLKQLVK-RRP--------D--------------------------------------------------------- 434 (800)
Q Consensus 421 l~~~lk~l~~-~~~--------~--------------------------------------------------------- 434 (800)
+......+.. ... .
T Consensus 234 ~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~ 313 (830)
T PRK12904 234 LYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGE 313 (830)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 1111111111 100 0
Q ss_pred ----------------------------------------------------ceEEEeccCCChH--HHhhhhcCCCccc
Q 003721 435 ----------------------------------------------------LRLIVTSATLDAE--RFSGYFFNCNIFS 460 (800)
Q Consensus 435 ----------------------------------------------------~kiI~lSATl~~~--~~~~~f~~~~~~~ 460 (800)
.++.+||.|...+ .|... .+.+++.
T Consensus 314 V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i-Y~l~vv~ 392 (830)
T PRK12904 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI-YNLDVVV 392 (830)
T ss_pred EEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH-hCCCEEE
Confidence 1233333333211 11111 1222333
Q ss_pred CCCCccceeEEeccc---cchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEc
Q 003721 461 IPGRTFPVDINYSRQ---EVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVY 537 (800)
Q Consensus 461 i~g~~~~v~~~~~~~---~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh 537 (800)
+|.........+... ...+........+...| ..+.++||||++.+.++.++..|.+. ++....+|
T Consensus 393 IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vLn 461 (830)
T PRK12904 393 IPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVLN 461 (830)
T ss_pred cCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEecc
Confidence 332211111000000 01112222333333333 34678999999999999999999876 77888899
Q ss_pred CCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCe---eEEEeCCCc-----------------cceeecCCCCccc
Q 003721 538 SALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGI---FYVIDPGFA-----------------KQNVYNPKQRLDS 597 (800)
Q Consensus 538 ~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v---~~VId~g~~-----------------k~~~yd~~~~~~~ 597 (800)
|. +.+|+..+..|+.+...|+||||+|+||+||+== .+.....+. +..+ -...|+..
T Consensus 462 ak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~GGLhV 538 (830)
T PRK12904 462 AK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEV-LEAGGLHV 538 (830)
T ss_pred Cc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhH-HHcCCCEE
Confidence 95 7889999999999999999999999999999721 000000000 0000 00012222
Q ss_pred cc-ccccCHHhHHHHhcccCCCC-CCeEEEccChH
Q 003721 598 LV-ITPISQASALQRAGRAGRTG-PGKCYRLYTES 630 (800)
Q Consensus 598 l~-~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~ 630 (800)
+. ..+-|.--=.|-.|||||.| ||.+-.+.+-+
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 22 23788888899999999999 99887776633
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=3.8e-17 Score=191.52 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEe
Q 003721 483 SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVA 562 (800)
Q Consensus 483 ~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVA 562 (800)
+.+..+...|.. +.++||||++.+.++.++..|... ++....+|+..+..++..+.+.+++|. |+||
T Consensus 437 Aii~ei~~~~~~--GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIA 503 (908)
T PRK13107 437 AIIKDIKDCRER--GQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIA 503 (908)
T ss_pred HHHHHHHHHHHc--CCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEe
Confidence 444555555543 678999999999999999999876 778889999999999999999999998 9999
Q ss_pred ccchhhcCCCC-------------------------------------CeeEEEeCCCccceeecCCCCcccccccccCH
Q 003721 563 TNIAEASLTID-------------------------------------GIFYVIDPGFAKQNVYNPKQRLDSLVITPISQ 605 (800)
Q Consensus 563 T~iae~GIdip-------------------------------------~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~ 605 (800)
||+|+||.||. +=-+||-+. .+-|.
T Consensus 504 TnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTe------------------rheSr 565 (908)
T PRK13107 504 TNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTE------------------RHESR 565 (908)
T ss_pred cCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecc------------------cCchH
Confidence 99999999985 112444322 26777
Q ss_pred HhHHHHhcccCCCC-CCeEEEccChH
Q 003721 606 ASALQRAGRAGRTG-PGKCYRLYTES 630 (800)
Q Consensus 606 ~~~~QR~GRaGR~g-~G~~~~L~t~~ 630 (800)
--=.|-.|||||.| ||.+-.+.+-+
T Consensus 566 RID~QLrGRaGRQGDPGss~f~lSlE 591 (908)
T PRK13107 566 RIDNQLRGRAGRQGDAGSSRFYLSME 591 (908)
T ss_pred HHHhhhhcccccCCCCCceeEEEEeC
Confidence 77789999999999 99877776633
No 109
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=2.8e-17 Score=179.05 Aligned_cols=281 Identities=21% Similarity=0.234 Sum_probs=180.2
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
..+.++-+|||.||||.-+++-+.+. .+-+|.-|.|.||.++++|+ ...|.++...+|-..++....+.....+
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hv 263 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHV 263 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccce
Confidence 45678889999999998888766554 46778899999999999997 5567777666775555544444456677
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccCCChHHHhhhhcCCCcccCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSATLDAERFSGYFFNCNIFSIP 462 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSATl~~~~~~~~f~~~~~~~i~ 462 (800)
-||-+|. ..-..|++.||||++. +-+..--.++-+.++... ..+.+.+=-|-++ +.. .+....
T Consensus 264 ScTVEM~-------sv~~~yeVAViDEIQm-m~Dp~RGwAWTrALLGl~AdEiHLCGepsvld---lV~-----~i~k~T 327 (700)
T KOG0953|consen 264 SCTVEMV-------SVNTPYEVAVIDEIQM-MRDPSRGWAWTRALLGLAADEIHLCGEPSVLD---LVR-----KILKMT 327 (700)
T ss_pred EEEEEEe-------ecCCceEEEEehhHHh-hcCcccchHHHHHHHhhhhhhhhccCCchHHH---HHH-----HHHhhc
Confidence 7888876 3456799999999993 333222112222221110 0111111111111 111 112223
Q ss_pred CCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCH
Q 003721 463 GRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPS 542 (800)
Q Consensus 463 g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~ 542 (800)
|....| ++...-..-.+.. .++.-..+-.+|+++|-. ++++|-.+...+.+.. ...++.+||+||+
T Consensus 328 Gd~vev--~~YeRl~pL~v~~---~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g--------~~k~aVIYGsLPP 393 (700)
T KOG0953|consen 328 GDDVEV--REYERLSPLVVEE---TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAG--------NHKCAVIYGSLPP 393 (700)
T ss_pred CCeeEE--EeecccCcceehh---hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhc--------CcceEEEecCCCC
Confidence 333222 2221111111111 222223344578877643 6788999888887762 4558999999999
Q ss_pred HHHHhhcCcCCC--CCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-
Q 003721 543 EIQSRIFEPAPP--GGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG- 619 (800)
Q Consensus 543 ~~R~~i~~~f~~--g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g- 619 (800)
+.|..--..|.+ +..+|+|||++.++|+|+. |+-||-+.+ ..|+.+. +.+++..+..|-+|||||.|
T Consensus 394 eTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl---~Kysg~e------~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 394 ETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSL---IKYSGRE------TEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred chhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeec---ccCCccc------ceeccHHHHHHHhhccccccc
Confidence 988766666654 8999999999999999996 777775555 3455433 34899999999999999999
Q ss_pred ---CCeEEEccChH
Q 003721 620 ---PGKCYRLYTES 630 (800)
Q Consensus 620 ---~G~~~~L~t~~ 630 (800)
.|.+-.|+.++
T Consensus 464 ~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 464 KYPQGEVTTLHSED 477 (700)
T ss_pred CCcCceEEEeeHhh
Confidence 58888887764
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=2.7e-16 Score=179.93 Aligned_cols=333 Identities=14% Similarity=0.181 Sum_probs=198.3
Q ss_pred chHHHHHHHHHH----HcC-CeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHHHHHHHHHHHHHhCCcccc
Q 003721 291 IFKLKNELIQAV----HDN-QVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVAATSVAKRVAEEFGCRLGE 364 (800)
Q Consensus 291 i~~~Q~~~i~~i----~~~-~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~la~qva~rv~~~~g~~~g~ 364 (800)
...+|..+|..+ .+| +.+++++.||+|||..+.+.+....... -++|++++-|++|..|.+..+...+- -|.
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P--~~~ 243 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP--FGT 243 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC--Ccc
Confidence 456788777664 343 4699999999999988776665543222 34999999999999998877655431 111
Q ss_pred eeeeeeecccccCCCceEEEechHHHHHHHhcC-C-----CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEE
Q 003721 365 EVGYAIRFEDCTGPDTVIKYMTDGMLLREILID-E-----NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLI 438 (800)
Q Consensus 365 ~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~-----~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI 438 (800)
.+- .-.+......++|.++|...+....... . .-..+++||||||| |++....- +++.-+-. -++
T Consensus 244 ~~n--~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFdA-----~~~ 314 (875)
T COG4096 244 KMN--KIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFDA-----ATQ 314 (875)
T ss_pred cee--eeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHHH-----HHH
Confidence 111 1111122336799999999888777543 1 24568999999999 88766542 33332222 135
Q ss_pred EeccCCChH---HHhhhhcCCCcc------------cCCCCccceeEEeccc--------------------cchh----
Q 003721 439 VTSATLDAE---RFSGYFFNCNIF------------SIPGRTFPVDINYSRQ--------------------EVTD---- 479 (800)
Q Consensus 439 ~lSATl~~~---~~~~~f~~~~~~------------~i~g~~~~v~~~~~~~--------------------~~~~---- 479 (800)
++|||+... .-..+|.+.|+. .++.+...+...+... ....
T Consensus 315 gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~ 394 (875)
T COG4096 315 GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEAR 394 (875)
T ss_pred hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccccccc
Confidence 569999652 333456455542 2232222222222110 0000
Q ss_pred ---------hHHHHH-HHHHHHhhc--C--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHH
Q 003721 480 ---------YLDSAL-ITVLQIHVD--E--PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQ 545 (800)
Q Consensus 480 ---------~~~~~l-~~v~~i~~~--~--~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R 545 (800)
.-...+ ..+...... . ..+++||||.+..+++.+...|....+... +--+..+.|.-. ..+
T Consensus 395 d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~----~~~a~~IT~d~~-~~q 469 (875)
T COG4096 395 DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN----GRYAMKITGDAE-QAQ 469 (875)
T ss_pred ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc----CceEEEEeccch-hhH
Confidence 001111 122222222 1 257899999999999999999988765422 223445555432 333
Q ss_pred HhhcCcC-CCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCC--C-
Q 003721 546 SRIFEPA-PPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGP--G- 621 (800)
Q Consensus 546 ~~i~~~f-~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~--G- 621 (800)
..|-.-+ ++.-.+|.|+.+++.+|||+|.|..+|-.-. -.|+.-|.||+||+-|..+ |
T Consensus 470 ~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~~~~~ 531 (875)
T COG4096 470 ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCPDLGG 531 (875)
T ss_pred HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccCccccC
Confidence 3332222 2445689999999999999999888873332 5799999999999999883 3
Q ss_pred ----e-EEEccC---hHHhhhhCCCCCCcchhccCchhHHHHHHH
Q 003721 622 ----K-CYRLYT---ESAYRSEMSPTTIPEIQRINLVHTTLTMKA 658 (800)
Q Consensus 622 ----~-~~~L~t---~~~~~~~~~~~~~pei~r~~L~~~~L~lk~ 658 (800)
+ -|.++. --+|. +|.+...+.-.+..+..-++.-..
T Consensus 532 ~~~dK~~F~ifDf~~~~~~~-~~~~~~~e~~~~~~l~~rLF~~~~ 575 (875)
T COG4096 532 PEQDKEFFTIFDFVDNTEYF-EMDPEMREGRVRVSLEQRLFADRL 575 (875)
T ss_pred ccccceeEEEEEhhhhhhhh-ccCcccccccccchHHHHHhhhhh
Confidence 2 333333 22222 356666666556666554444333
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.74 E-value=5.3e-17 Score=189.33 Aligned_cols=324 Identities=18% Similarity=0.249 Sum_probs=202.6
Q ss_pred cCCchHHHHHHHHHHHcC----CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCccc
Q 003721 288 SLPIFKLKNELIQAVHDN----QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLG 363 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~----~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g 363 (800)
.+.+..-|..+++.+.+. ...++.|.||||||.++.+.+.+. +..|+.+++++|-..|..|+..|+...||.+++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 345667788888888665 689999999999999998887776 677889999999999999999999999997776
Q ss_pred ceeee---eeecc---cccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch----HHHHHHHHHhcCC
Q 003721 364 EEVGY---AIRFE---DCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV----LFGLLKQLVKRRP 433 (800)
Q Consensus 364 ~~vg~---~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~----l~~~lk~l~~~~~ 433 (800)
..... ..+.+ ...+...+|+++|-.-+.- .+.++++|||||-|+-++..+- -..-+..++....
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 54331 11111 2235678899988665532 4789999999999985544331 1111222223345
Q ss_pred CceEEEeccCCChHHHhhhhcC-CCcccCCCCcc---ceeEEec--cccchh----hHHHHHHHHHHHhhcCCCCCEEEE
Q 003721 434 DLRLIVTSATLDAERFSGYFFN-CNIFSIPGRTF---PVDINYS--RQEVTD----YLDSALITVLQIHVDEPEGDILLF 503 (800)
Q Consensus 434 ~~kiI~lSATl~~~~~~~~f~~-~~~~~i~g~~~---~v~~~~~--~~~~~~----~~~~~l~~v~~i~~~~~~g~iLVF 503 (800)
+.++|+-|||+.-+.+...-.+ ...+....|.. +..+.+. ...... .-...+..+.+.. +.+.++|+|
T Consensus 349 ~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~llf 426 (730)
T COG1198 349 NAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLLF 426 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEEE
Confidence 7899999999998877665333 12222222221 2222222 111111 1122222222221 125678888
Q ss_pred cCCHHHHHHHHHHHHHHHH-----------------------------------------------------hhCCCCCC
Q 003721 504 LTGQEEIDFACESLCEKIK-----------------------------------------------------ALGKDVPE 530 (800)
Q Consensus 504 ~~s~~~i~~l~~~L~~~l~-----------------------------------------------------~~~~~~~~ 530 (800)
+|.+.-.-.+...=+.... .+..-.|+
T Consensus 427 lnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~ 506 (730)
T COG1198 427 LNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPG 506 (730)
T ss_pred EccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCC
Confidence 8877654322111010000 00111344
Q ss_pred eEEEEEcCCCCH--HHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEE----eCCCccceeecCCCCcccccccccC
Q 003721 531 LVVLPVYSALPS--EIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVI----DPGFAKQNVYNPKQRLDSLVITPIS 604 (800)
Q Consensus 531 ~~v~~lh~~l~~--~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VI----d~g~~k~~~yd~~~~~~~l~~~p~S 604 (800)
..+.-+-++... ..-+..+..|.+|+.+|||.|.+++.|.|+|+++.|. |.++ +...+...-..
T Consensus 507 ~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L----------~~~DfRA~Er~ 576 (730)
T COG1198 507 ARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL----------GSPDFRASERT 576 (730)
T ss_pred CcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh----------cCCCcchHHHH
Confidence 455555555443 2245677889999999999999999999999999875 3333 22233333556
Q ss_pred HHhHHHHhcccCCCC-CCeEE-EccChH
Q 003721 605 QASALQRAGRAGRTG-PGKCY-RLYTES 630 (800)
Q Consensus 605 ~~~~~QR~GRaGR~g-~G~~~-~L~t~~ 630 (800)
..-+.|=+|||||.+ +|..+ .-|.++
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 677899999999996 77654 344443
No 112
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.74 E-value=4.4e-18 Score=153.60 Aligned_cols=91 Identities=48% Similarity=0.809 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhcCCHHHHHHHHHHccCCCCCcCchhHHHHHH--HHHh
Q 003721 680 SAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPRERQAKAD--EKRA 757 (800)
Q Consensus 680 ~al~~L~~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~--~~~~ 757 (800)
.|++.|+.+||||++|+||++|+.|+.||++|.+||||+.|..++|.+++++|+|+||++++|..|.++++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999864433322 2344
Q ss_pred h---------cCCCCCCHHHHH
Q 003721 758 R---------FFQPEGDHLTLL 770 (800)
Q Consensus 758 ~---------f~~~~~D~~~~l 770 (800)
+ +.+..|||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 4 478899999987
No 113
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.1e-16 Score=185.47 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=91.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHH---hCCcccceee
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE---FGCRLGEEVG 367 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~---~g~~~g~~vg 367 (800)
+.++|.++++.+..++++|..++||+|||+++.++++...+.. ..++++.|++.||.|.+..+... +|..++..+|
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~G 171 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVS 171 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc-CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 7889999999999999999999999999999999999876543 35888899999999988776543 3444444443
Q ss_pred eeeecccccCCCceEEEechHHH-HHHHhcCC-CC-------CCCceEEEeccCc
Q 003721 368 YAIRFEDCTGPDTVIKYMTDGML-LREILIDE-NL-------SQYSVIMLDEAHE 413 (800)
Q Consensus 368 ~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~~-~l-------~~~~~IIiDEaHe 413 (800)
.....+....-.+.|+|+|||.| ++.+.... .+ ..+.++|||||+.
T Consensus 172 G~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 172 GSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 22111111122478999999999 87776542 23 3568999999995
No 114
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.72 E-value=5.4e-17 Score=160.05 Aligned_cols=152 Identities=26% Similarity=0.277 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHHHHHHHHHHHHHhCC---cccceeee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVAATSVAKRVAEEFGC---RLGEEVGY 368 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~la~qva~rv~~~~g~---~~g~~vg~ 368 (800)
++|.++++.+.+++++++.||||||||+++..+++...... ..++++++|+++++.++..++...++. .+....|.
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGG 81 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999876554 349999999999999999999877754 11111111
Q ss_pred ee-e--cccccCCCceEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCC--cchHHHHHHHHHhcCCCceEEEecc
Q 003721 369 AI-R--FEDCTGPDTVIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTIN--TDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 369 ~~-~--~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~--~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
.. . .......+..|+++|++.+.+.+... ..+.++++||+||+|..... ...+..++..+ ...++.++++|||
T Consensus 82 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~-~~~~~~~~i~~SA 160 (169)
T PF00270_consen 82 QSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL-KRFKNIQIILLSA 160 (169)
T ss_dssp SCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-HTTTTSEEEEEES
T ss_pred ccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh-cCCCCCcEEEEee
Confidence 10 0 01111246889999999999988653 24666999999999953332 11222223332 2234789999999
Q ss_pred CCC
Q 003721 443 TLD 445 (800)
Q Consensus 443 Tl~ 445 (800)
|++
T Consensus 161 T~~ 163 (169)
T PF00270_consen 161 TLP 163 (169)
T ss_dssp SST
T ss_pred CCC
Confidence 998
No 115
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.70 E-value=2.1e-16 Score=161.04 Aligned_cols=156 Identities=19% Similarity=0.098 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC----CCeEEEecchHHHHHHHHHHHHHHh---CCcc
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT----KGKIGCTQPRRVAATSVAKRVAEEF---GCRL 362 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~----~~~il~~~P~r~la~qva~rv~~~~---g~~~ 362 (800)
.++++|.++++.+.+++++++++|||+|||..+..++++..... ++++++++|+++|+.|++..+.... +..+
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceE
Confidence 36889999999999999999999999999999888888776553 4589999999999999998876543 2222
Q ss_pred cceeeeeee--cccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 363 GEEVGYAIR--FEDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 363 g~~vg~~~~--~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
+...|.... .......+..|+++|++.+.+.+.... .+.+++++|+||+|. ..+.++...+...+....++.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMGFEDQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccChHHHHHHHHHhCCcccEEEE
Confidence 222221110 001112367899999999988775543 578899999999994 3344433333333333445789999
Q ss_pred eccCCCh
Q 003721 440 TSATLDA 446 (800)
Q Consensus 440 lSATl~~ 446 (800)
+|||++.
T Consensus 180 ~SAT~~~ 186 (203)
T cd00268 180 FSATMPK 186 (203)
T ss_pred EeccCCH
Confidence 9999984
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=1.2e-15 Score=181.23 Aligned_cols=299 Identities=15% Similarity=0.075 Sum_probs=172.2
Q ss_pred hHHHHHHHHHH----Hc------CCeEEEEccCCCchHHHHHHHHHHhh-ccCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 292 FKLKNELIQAV----HD------NQVLILIGETGSGKTTQLAQYLAEAG-YTTKGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 292 ~~~Q~~~i~~i----~~------~~~viv~apTGSGKT~~~~~~lle~~-~~~~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
..+|..++..+ .. .+..+|+.+||||||..+...+.... .....+|++++||+.|..|..+.+......
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~ 319 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD 319 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC
Confidence 45677777664 22 35799999999999977755443321 123468999999999999999988664421
Q ss_pred cccceeeeeeec-ccccCCCceEEEechHHHHHHHhc---CCCCCCC-ceEEEeccCcCCCCcchHHHHHHHHHhcCCCc
Q 003721 361 RLGEEVGYAIRF-EDCTGPDTVIKYMTDGMLLREILI---DENLSQY-SVIMLDEAHERTINTDVLFGLLKQLVKRRPDL 435 (800)
Q Consensus 361 ~~g~~vg~~~~~-~~~~~~~~~I~~~T~g~Ll~~l~~---~~~l~~~-~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ 435 (800)
.+ ..++..... .........|+++|.+.+.+.+.. ....... .+||+|||| |+....+ .+.+....|+.
T Consensus 320 ~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~----~~~l~~~~p~a 393 (667)
T TIGR00348 320 CA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGEL----AKNLKKALKNA 393 (667)
T ss_pred CC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHH----HHHHHhhCCCC
Confidence 11 001100000 111223467999999988764321 1111112 389999999 6654432 22333446788
Q ss_pred eEEEeccCCChH---HHhhhhc---CCCccc-------CCCCccceeEEeccccch------------------------
Q 003721 436 RLIVTSATLDAE---RFSGYFF---NCNIFS-------IPGRTFPVDINYSRQEVT------------------------ 478 (800)
Q Consensus 436 kiI~lSATl~~~---~~~~~f~---~~~~~~-------i~g~~~~v~~~~~~~~~~------------------------ 478 (800)
..++||||+-.. .-...|+ +.++.. -.|-..| +.|......
T Consensus 394 ~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~--i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 471 (667)
T TIGR00348 394 SFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVK--IDYEDRLPEDHLDRKKLDAFFDEIFELLPERIR 471 (667)
T ss_pred cEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeee--EEEEecchhhccChHHHHHHHHHHHHhhhcccc
Confidence 999999999421 1111221 111111 0122222 222211100
Q ss_pred hh----H-----------------HHHHHHHHHHh---hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEE
Q 003721 479 DY----L-----------------DSALITVLQIH---VDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVL 534 (800)
Q Consensus 479 ~~----~-----------------~~~l~~v~~i~---~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~ 534 (800)
+. + ......++... ....+++.+|||.++..|..+++.|.+...... +....
T Consensus 472 ~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~v 547 (667)
T TIGR00348 472 EITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF----EASAI 547 (667)
T ss_pred HHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc----CCeeE
Confidence 00 0 00011111111 112258899999999999999888876543221 12334
Q ss_pred EEcCCCCHH---------------------HHHhhcCcCCC-CCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCC
Q 003721 535 PVYSALPSE---------------------IQSRIFEPAPP-GGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPK 592 (800)
Q Consensus 535 ~lh~~l~~~---------------------~R~~i~~~f~~-g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~ 592 (800)
.++++.+.+ ....+.+.|++ +..+|||.++.+.+|+|.|.+.+++-
T Consensus 548 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl------------ 615 (667)
T TIGR00348 548 VMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL------------ 615 (667)
T ss_pred EecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE------------
Confidence 444433221 12356677765 68899999999999999999988761
Q ss_pred CCcccccccccCHHhHHHHhcccCCC-CCC
Q 003721 593 QRLDSLVITPISQASALQRAGRAGRT-GPG 621 (800)
Q Consensus 593 ~~~~~l~~~p~S~~~~~QR~GRaGR~-g~G 621 (800)
-.|..-..++|.+||+.|. .+|
T Consensus 616 -------dKplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 616 -------DKPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred -------eccccccHHHHHHHHhccccCCC
Confidence 1155556789999999994 444
No 117
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.66 E-value=3.4e-16 Score=138.74 Aligned_cols=90 Identities=63% Similarity=1.004 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCcccCCccchhhhhhhcCCCChHHHHHHHHHhhc-CCHHHHHHHHHHccCCCCCcCchhHHHHHHHHHhh
Q 003721 680 SAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDL-GCSDEILTIIAMIQTGHIFTRPRERQAKADEKRAR 758 (800)
Q Consensus 680 ~al~~L~~lgald~~g~lT~lG~~~~~~pl~p~~~k~l~~~~~~-~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~ 758 (800)
.|++.|+.+||||.+|+||++|+.|+.||++|.+||||+.+..+ +|.+++++|+|++++.++|.+| ..+......+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999999888 455566677888
Q ss_pred cCCC-CCCHHHHH
Q 003721 759 FFQP-EGDHLTLL 770 (800)
Q Consensus 759 f~~~-~~D~~~~l 770 (800)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8888 89999874
No 118
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.65 E-value=1e-14 Score=176.74 Aligned_cols=306 Identities=17% Similarity=0.128 Sum_probs=187.9
Q ss_pred CchHHHHHHHHHHH----cCCeEEEEccCCCchHHHHHHHHHHhh--ccCCCeEEEecchHHHHHHHHHHHHHHhCC-cc
Q 003721 290 PIFKLKNELIQAVH----DNQVLILIGETGSGKTTQLAQYLAEAG--YTTKGKIGCTQPRRVAATSVAKRVAEEFGC-RL 362 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~----~~~~viv~apTGSGKT~~~~~~lle~~--~~~~~~il~~~P~r~la~qva~rv~~~~g~-~~ 362 (800)
.+++||.+.+..+. .+...|+.-+.|.|||.++..++.... ....+.++|++|...+ .+....+.+.+.. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL-~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTL-GNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHH-HHHHHHHHHHCCCCce
Confidence 47889999988763 567899999999999998766554321 2234588999997554 4455555544321 11
Q ss_pred cceeeeee-----ecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch-HHHHHHHHHhcCCCce
Q 003721 363 GEEVGYAI-----RFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV-LFGLLKQLVKRRPDLR 436 (800)
Q Consensus 363 g~~vg~~~-----~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~-l~~~lk~l~~~~~~~k 436 (800)
....|... +..........|+++|.+++.+.... ..--++++||||||| +.-+... +...++.+. ...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-L~k~~W~~VIvDEAH-rIKN~~Sklskalr~L~----a~~ 321 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-LKRFSWRYIIIDEAH-RIKNENSLLSKTMRLFS----TNY 321 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-hccCCCCEEEEcCcc-ccCCHHHHHHHHHHHhh----cCc
Confidence 11112110 00011223567899999988765321 112357899999999 4444332 333333332 223
Q ss_pred EEEeccCCChH---------------------HHhhhhcCCC-----------------cc----------cCCCCccce
Q 003721 437 LIVTSATLDAE---------------------RFSGYFFNCN-----------------IF----------SIPGRTFPV 468 (800)
Q Consensus 437 iI~lSATl~~~---------------------~~~~~f~~~~-----------------~~----------~i~g~~~~v 468 (800)
.+++|+|+-.. .|..+|.... .+ .+|... .
T Consensus 322 RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~--e 399 (1033)
T PLN03142 322 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK--E 399 (1033)
T ss_pred EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce--e
Confidence 58899998422 1222221100 00 001000 0
Q ss_pred eEEeccccc--hh-h---HH-------------HHH-----------------------------------------HHH
Q 003721 469 DINYSRQEV--TD-Y---LD-------------SAL-----------------------------------------ITV 488 (800)
Q Consensus 469 ~~~~~~~~~--~~-~---~~-------------~~l-----------------------------------------~~v 488 (800)
.+.+..... .. | +. ..+ ..+
T Consensus 400 ~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 400 TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 001100000 00 0 00 000 001
Q ss_pred HHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCC---CCceEEEeccc
Q 003721 489 LQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPP---GGRKVVVATNI 565 (800)
Q Consensus 489 ~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~---g~~kVLVAT~i 565 (800)
+.. ....+.++|||+......+.+...|... ++....+||+++.++|..+++.|.. +..-+|++|.+
T Consensus 480 L~~-Lk~~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 480 LPK-LKERDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred HHH-HHhcCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 111 1123568999998777777666666543 6778889999999999999999964 23467899999
Q ss_pred hhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHHh
Q 003721 566 AEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESAY 632 (800)
Q Consensus 566 ae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~~ 632 (800)
++.|||+...++||.++. |.++....|++||+-|-| +=.+|+|++....
T Consensus 550 GGlGINLt~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 550 GGLGINLATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred cccCCchhhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 999999999999999988 899999999999999999 3468999987655
No 119
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=1.3e-15 Score=165.52 Aligned_cols=309 Identities=13% Similarity=0.006 Sum_probs=200.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhc-cCCCeEEEecchHHHHHHHHHHHH------HHhCCcc
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGY-TTKGKIGCTQPRRVAATSVAKRVA------EEFGCRL 362 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~-~~~~~il~~~P~r~la~qva~rv~------~~~g~~~ 362 (800)
.-+.+|.++++.+.+|+++++.-.|.|||+++.......... .....-+++.|+.+++....+-+. .++...+
T Consensus 286 ~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~ 365 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAY 365 (1034)
T ss_pred chhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcce
Confidence 457899999999999999999999999999886554444322 223467788899988876433210 1111000
Q ss_pred cc-eeeeeeecc-cccCCCceEEEechHHHHHHHhcCC-----CCCCCceEEEeccCcCCCCcch-HHHHHHHHHh----
Q 003721 363 GE-EVGYAIRFE-DCTGPDTVIKYMTDGMLLREILIDE-----NLSQYSVIMLDEAHERTINTDV-LFGLLKQLVK---- 430 (800)
Q Consensus 363 g~-~vg~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~~-----~l~~~~~IIiDEaHer~~~~d~-l~~~lk~l~~---- 430 (800)
.. .-|.+...+ .....+.+.+|..+.+.....+.+. .+-...++++||+|-...-+.. ....++++..
T Consensus 366 V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 366 VEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKG 445 (1034)
T ss_pred eecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHH
Confidence 00 000000000 0112466788888887766554322 2344568999999954433332 2222333222
Q ss_pred --cCCCceEEEeccCCCh-HH-HhhhhcC--CCcccCCCCccceeEEecccc---------chhhHHHHHHHHHHHhhcC
Q 003721 431 --RRPDLRLIVTSATLDA-ER-FSGYFFN--CNIFSIPGRTFPVDINYSRQE---------VTDYLDSALITVLQIHVDE 495 (800)
Q Consensus 431 --~~~~~kiI~lSATl~~-~~-~~~~f~~--~~~~~i~g~~~~v~~~~~~~~---------~~~~~~~~l~~v~~i~~~~ 495 (800)
...+++++-.|||+.. .. ..+.|+- ...+++.|.+........-.| ....+.+....+.++..+
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~- 524 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH- 524 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc-
Confidence 2468899999999943 33 3333332 334666666543333222111 112222222333333332
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCe
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGI 575 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v 575 (800)
+-++|.||++++-|+-+....++.+.+.+++. --.+..+.||-..++|.+|+...--|+.+-|||||++|.||||.+.
T Consensus 525 -~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 525 -GLRCIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred -CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 56799999999999988777777665544321 1235678899999999999999999999999999999999999999
Q ss_pred eEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC
Q 003721 576 FYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG 619 (800)
Q Consensus 576 ~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g 619 (800)
+.|+..|| |.|.+++.|.+|||||..
T Consensus 603 DAVl~~GF------------------P~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 603 DAVLHLGF------------------PGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred eeEEEccC------------------chhHHHHHHHhccccccC
Confidence 99999999 999999999999999988
No 120
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.61 E-value=7.2e-15 Score=173.00 Aligned_cols=113 Identities=19% Similarity=0.099 Sum_probs=100.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCe
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGI 575 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v 575 (800)
.+.++||||++++.++.+++.|.+. ++.+..+||+++..+|.++++.|+.|...|+|||+++++|+|+|++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v 511 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEV 511 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCC
Confidence 3678999999999999999999876 6788999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChH
Q 003721 576 FYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTES 630 (800)
Q Consensus 576 ~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~ 630 (800)
++||.++- . ....|.+..+|+||+|||||..+|+|+.+++..
T Consensus 512 ~lVvi~Da--------d-----ifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 512 SLVAILDA--------D-----KEGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred cEEEEeCc--------c-----cccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 99996652 0 001188999999999999999999999998854
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.61 E-value=8.9e-14 Score=161.59 Aligned_cols=274 Identities=19% Similarity=0.162 Sum_probs=178.9
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHh---CCcccce
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF---GCRLGEE 365 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~---g~~~g~~ 365 (800)
.++|..|.-....+..|+..-++||||.||||-...+.+-. -..+++++++.||+.|+.|+++++.+.. + .....
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~-a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~-~~~~~ 158 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL-AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG-SLDVL 158 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH-HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC-Cccee
Confidence 46788899999999999999999999999998866554433 2346799999999999999999986543 2 11222
Q ss_pred eeeeeecc---------cccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCc---CCCCcchHHHH---------
Q 003721 366 VGYAIRFE---------DCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHE---RTINTDVLFGL--------- 424 (800)
Q Consensus 366 vg~~~~~~---------~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHe---r~~~~d~l~~~--------- 424 (800)
+.|+.... ...+.+.+|.++|.+.|...+..-.. -++++|++|.+|. .+-+.|-++.+
T Consensus 159 ~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~ 237 (1187)
T COG1110 159 VVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIE 237 (1187)
T ss_pred eeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHH
Confidence 22443321 12346789999999988776532222 4799999999995 11222211111
Q ss_pred -------HH-HH---------------------HhcCCCceEEEeccCCChH----HHhhhhcCCCcccCCCCccceeEE
Q 003721 425 -------LK-QL---------------------VKRRPDLRLIVTSATLDAE----RFSGYFFNCNIFSIPGRTFPVDIN 471 (800)
Q Consensus 425 -------lk-~l---------------------~~~~~~~kiI~lSATl~~~----~~~~~f~~~~~~~i~g~~~~v~~~ 471 (800)
++ ++ ..+...-.+|+.|||..+. .+...+++-.+-....-...+...
T Consensus 238 ~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~ 317 (1187)
T COG1110 238 SAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDI 317 (1187)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeee
Confidence 00 00 0112345789999999653 233333332221111111122222
Q ss_pred eccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCC---HHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhh
Q 003721 472 YSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTG---QEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRI 548 (800)
Q Consensus 472 ~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s---~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i 548 (800)
|... .. ...+..+.... +...|||++. ++.++.+++.|... ++.+..+|+. ..+.
T Consensus 318 y~~~---~~----~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~---------Gi~a~~~~a~-----~~~~ 375 (1187)
T COG1110 318 YVES---ES----LEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH---------GINAELIHAE-----KEEA 375 (1187)
T ss_pred eccC---cc----HHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc---------CceEEEeecc-----chhh
Confidence 3222 22 22222332222 3358999998 88888888888776 8999999985 3678
Q ss_pred cCcCCCCCceEEEec----cchhhcCCCCC-eeEEEeCCCccce
Q 003721 549 FEPAPPGGRKVVVAT----NIAEASLTIDG-IFYVIDPGFAKQN 587 (800)
Q Consensus 549 ~~~f~~g~~kVLVAT----~iae~GIdip~-v~~VId~g~~k~~ 587 (800)
++.|..|+.+++|.+ .++-+|||+|. ++|+|-+|..|.+
T Consensus 376 le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 376 LEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred hhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 899999999999976 58999999995 8999999997544
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.2e-13 Score=150.74 Aligned_cols=167 Identities=20% Similarity=0.125 Sum_probs=124.9
Q ss_pred CceEEEeccCCChHHHhhhhcC--CCcccCCCCccc-eeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH
Q 003721 434 DLRLIVTSATLDAERFSGYFFN--CNIFSIPGRTFP-VDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEI 510 (800)
Q Consensus 434 ~~kiI~lSATl~~~~~~~~f~~--~~~~~i~g~~~~-v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i 510 (800)
..|+|..|||+....+...-++ ..++.-.|-.-| +++. |....++..+..+...... +.++||-+-|++.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~ievR----p~~~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmA 459 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIEVR----PTKGQVDDLLSEIRKRVAK--NERVLVTTLTKKMA 459 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCceeee----cCCCcHHHHHHHHHHHHhc--CCeEEEEeehHHHH
Confidence 3589999999987655443221 123333343333 2222 2233344444444433222 57899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeec
Q 003721 511 DFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 590 (800)
Q Consensus 511 ~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd 590 (800)
+.+++.|.+. ++++..+||.+..-+|..|+...+.|...|||.-|.+-.|+|+|.|..|.-.+-
T Consensus 460 EdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDA------- 523 (663)
T COG0556 460 EDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA------- 523 (663)
T ss_pred HHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeec-------
Confidence 9999999887 899999999999999999999999999999999999999999999999873322
Q ss_pred CCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccC
Q 003721 591 PKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYT 628 (800)
Q Consensus 591 ~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t 628 (800)
-+.|. ..|-.+.+|-+|||.|.-.|+++....
T Consensus 524 DKeGF------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 524 DKEGF------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred Ccccc------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 12232 778899999999999999999887655
No 123
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.59 E-value=5.5e-17 Score=184.02 Aligned_cols=433 Identities=10% Similarity=-0.098 Sum_probs=322.8
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC----CCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 286 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT----KGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~----~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
+.-+|..++-+.+++++.++.++++-+.||||||++.++.+++..... -+.++..+||+..|...+.++.-+.++.
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvg 481 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVG 481 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccc
Confidence 445788999999999999999999999999999999999999875543 3478889999999999888877666666
Q ss_pred ccceeeeeeecccc-cCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 362 LGEEVGYAIRFEDC-TGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 362 ~g~~vg~~~~~~~~-~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
++...+|..++... ...+..+..+|++.+++.++.+ +......+.||.|++++++|++..++..+ | ++.++
T Consensus 482 vllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~----p--~~~~~ 553 (1282)
T KOG0921|consen 482 VLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI----P--DVTVH 553 (1282)
T ss_pred hhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc----c--ceeec
Confidence 66666776655533 3355666788999888877643 45667789999999999999988877665 2 35899
Q ss_pred ccCCChHHHhhhhcCCCcccCCCCccceeEEec------------------------------------cccchhhHHHH
Q 003721 441 SATLDAERFSGYFFNCNIFSIPGRTFPVDINYS------------------------------------RQEVTDYLDSA 484 (800)
Q Consensus 441 SATl~~~~~~~~f~~~~~~~i~g~~~~v~~~~~------------------------------------~~~~~~~~~~~ 484 (800)
++|.+...|..++..+++..+++++.++...+. ........++.
T Consensus 554 grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal 633 (1282)
T KOG0921|consen 554 GRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEAL 633 (1282)
T ss_pred cccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHH
Confidence 999999999999999988888887665532210 11234444444
Q ss_pred HHHHHH------HhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCce
Q 003721 485 LITVLQ------IHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRK 558 (800)
Q Consensus 485 l~~v~~------i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~k 558 (800)
+..+.. +..-.+++..|+|++++--.......+... .-++ .....+.+.|..+...+.+.+.+....+.+.
T Consensus 634 ~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~stnia 710 (1282)
T KOG0921|consen 634 LNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EILP--LHSQLTSQEQRKVFEPVPEGVTKIILSTNIA 710 (1282)
T ss_pred HhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-cccc--chhhcccHhhhhccCccccccccccccccee
Confidence 433322 222346788999999988777666655442 1111 1134577789999999999999999999999
Q ss_pred EEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCCC
Q 003721 559 VVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSP 638 (800)
Q Consensus 559 VLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~~ 638 (800)
+...|...++.|.+.++.+|++++-.+.+.+....-++.....+.+.....||.|||+|...+.||.++....+. +|..
T Consensus 711 etsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~-em~r 789 (1282)
T KOG0921|consen 711 ETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTA-EMFR 789 (1282)
T ss_pred eEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcH-hhhc
Confidence 999999999999999999999999988888888777777777788888999999999999999999999887775 6999
Q ss_pred CCCcchhccCchhHHHHHHHcCCCCcccc--cCCCCCChHHHHHHHHHHHHcCCcccCC--ccchhhhhhhcCCCChHHH
Q 003721 639 TTIPEIQRINLVHTTLTMKAMGINNLLSF--DFVDPPSPQALISAMEQLYSLGALDEEG--LLTKLGKKMAEFPLDPPLS 714 (800)
Q Consensus 639 ~~~pei~r~~L~~~~L~lk~~~i~~~~~f--~~~~~p~~~~i~~al~~L~~lgald~~g--~lT~lG~~~~~~pl~p~~~ 714 (800)
++.|||-++.+...++.++.+-...+..+ +.+.+|+.... .+..|-..+.+...| .+|.+++.....|+.|..+
T Consensus 790 ~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~--~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~ 867 (1282)
T KOG0921|consen 790 TPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLR--EMGALDANDELTPLGRMLARLPIEPRIGKMMILGTA 867 (1282)
T ss_pred CccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHH--HhhhhhccCcccchhhhhhhccCcccccceeeechh
Confidence 99999988776555554444322223233 34455554443 444444444444445 5799999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHH
Q 003721 715 KMLLASVDLGCSDEILTI 732 (800)
Q Consensus 715 k~l~~~~~~~c~~~~l~i 732 (800)
++.+..+.+-.++-..++
T Consensus 868 ~g~~~~m~~~as~~s~~~ 885 (1282)
T KOG0921|consen 868 LGAGSVMCDVASAMSFPT 885 (1282)
T ss_pred hccchhhhhhhccccccc
Confidence 888777655433333333
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.54 E-value=7.7e-13 Score=162.19 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCce
Q 003721 479 DYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRK 558 (800)
Q Consensus 479 ~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~k 558 (800)
.|.......+..+... .+|++|||+++.+..+.++..|...... .++.+.. .+.. ..|.++++.|++|...
T Consensus 657 ~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~~ 727 (850)
T TIGR01407 657 EYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEKA 727 (850)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCCe
Confidence 4555555555555443 4689999999999999999988653210 1233322 2222 4688899999999999
Q ss_pred EEEeccchhhcCCCCCee--EEEeCCCccceeecCC----------CCcccc--cccccCHHhHHHHhcccCCCC--CCe
Q 003721 559 VVVATNIAEASLTIDGIF--YVIDPGFAKQNVYNPK----------QRLDSL--VITPISQASALQRAGRAGRTG--PGK 622 (800)
Q Consensus 559 VLVAT~iae~GIdip~v~--~VId~g~~k~~~yd~~----------~~~~~l--~~~p~S~~~~~QR~GRaGR~g--~G~ 622 (800)
||++|+.+.+|||+|+.. .||-.++.....-||. .|-+.+ ...|.....+.|-+||.=|+. .|.
T Consensus 728 iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 728 ILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGS 807 (850)
T ss_pred EEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEE
Confidence 999999999999999865 5555565332211110 111111 112556677899999999988 565
Q ss_pred EEEc
Q 003721 623 CYRL 626 (800)
Q Consensus 623 ~~~L 626 (800)
.+.+
T Consensus 808 v~il 811 (850)
T TIGR01407 808 IVIL 811 (850)
T ss_pred EEEE
Confidence 5544
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.54 E-value=6.5e-14 Score=166.04 Aligned_cols=112 Identities=21% Similarity=0.133 Sum_probs=99.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCe
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGI 575 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v 575 (800)
.+.++||||++++.++.+++.|.+. ++.+..+||+++..+|..+++.|++|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 3667999999999999999999775 7889999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccCh
Q 003721 576 FYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTE 629 (800)
Q Consensus 576 ~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~ 629 (800)
++||.++. ...| .|.+..+|+||+||+||...|.|+.+++.
T Consensus 516 ~lVii~d~-------eifG------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 516 SLVAILDA-------DKEG------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cEEEEeCC-------cccc------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99997654 0111 17899999999999999889999999984
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.53 E-value=5.1e-14 Score=132.31 Aligned_cols=104 Identities=28% Similarity=0.401 Sum_probs=96.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCe
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGI 575 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v 575 (800)
..+++|||+++...++.+++.|.+. ...+..+||+++..+|..+++.|.+|..+||++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 4788999999999999999988762 6779999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEc
Q 003721 576 FYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRL 626 (800)
Q Consensus 576 ~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L 626 (800)
++||..+. |.+...+.|++||+||.| .|.|+.+
T Consensus 98 ~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 99998888 999999999999999999 8888754
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=8e-13 Score=152.18 Aligned_cols=117 Identities=24% Similarity=0.231 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEE
Q 003721 482 DSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVV 561 (800)
Q Consensus 482 ~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLV 561 (800)
.+.+..+...|.. +.||||.+.+.+..+.++..|.+. ++....+++.-...+-..|-+.-+. -.|.|
T Consensus 414 ~Aii~ei~~~~~~--GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTI 480 (764)
T PRK12326 414 DAIVEHIAEVHET--GQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKY--GAVTV 480 (764)
T ss_pred HHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCC--CcEEE
Confidence 3444555555543 678999999999999999999875 5555566665333333333333222 37999
Q ss_pred eccchhhcCCCC---------------CeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEE
Q 003721 562 ATNIAEASLTID---------------GIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYR 625 (800)
Q Consensus 562 AT~iae~GIdip---------------~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~ 625 (800)
|||+|+||.||. +=-+||-+.. +.|..-=.|-.|||||.| ||.+-.
T Consensus 481 ATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss~f 542 (764)
T PRK12326 481 STQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSSVF 542 (764)
T ss_pred EecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCceeE
Confidence 999999999985 2235664444 788888899999999999 998777
Q ss_pred ccCh
Q 003721 626 LYTE 629 (800)
Q Consensus 626 L~t~ 629 (800)
+.+-
T Consensus 543 ~lSl 546 (764)
T PRK12326 543 FVSL 546 (764)
T ss_pred EEEc
Confidence 7663
No 128
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.49 E-value=3.2e-14 Score=121.82 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=70.2
Q ss_pred CeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHH
Q 003721 530 ELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 609 (800)
Q Consensus 530 ~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~ 609 (800)
++.+..+||+++.++|..+++.|.+|...|||||+++++|||+|++++||.++. |.+...|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhcccCCCC
Q 003721 610 QRAGRAGRTG 619 (800)
Q Consensus 610 QR~GRaGR~g 619 (800)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999986
No 129
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.49 E-value=5.3e-13 Score=133.72 Aligned_cols=157 Identities=26% Similarity=0.148 Sum_probs=110.0
Q ss_pred CCchHHHHHHHHHHHcC-CeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHHHHHHHHHHHHHhCCccccee
Q 003721 289 LPIFKLKNELIQAVHDN-QVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEV 366 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~-~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~la~qva~rv~~~~g~~~g~~v 366 (800)
.+++++|.++++.+... +.+++.||||||||+.+..++++..... ..+++++.|++.++.+..+++...+........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 45678999999999988 9999999999999999888888875433 368999999999999999998776643211111
Q ss_pred eeeeec------ccccCCCceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 367 GYAIRF------EDCTGPDTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 367 g~~~~~------~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
...... .........++++|++.+.+.+.... ...+++++|+||+|..... .....+...+....+..++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~ 165 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLLL 165 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEEE
Confidence 110000 01122233899999999999886654 5778999999999953321 222222222222246789999
Q ss_pred eccCCCh
Q 003721 440 TSATLDA 446 (800)
Q Consensus 440 lSATl~~ 446 (800)
+|||++.
T Consensus 166 ~saT~~~ 172 (201)
T smart00487 166 LSATPPE 172 (201)
T ss_pred EecCCch
Confidence 9999953
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.48 E-value=2.9e-13 Score=146.01 Aligned_cols=291 Identities=14% Similarity=0.130 Sum_probs=183.2
Q ss_pred hcCCchHHHHHHHHHHHcC---CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCccc
Q 003721 287 RSLPIFKLKNELIQAVHDN---QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLG 363 (800)
Q Consensus 287 ~~lPi~~~Q~~~i~~i~~~---~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g 363 (800)
...-+.+||+..+..+-.| +.-||+.|.|+|||++-.-++ .+-+++++|++..-+.+.|....+.......-.
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa----~tikK~clvLcts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA----CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee----eeecccEEEEecCccCHHHHHHHHHhhcccCcc
Confidence 4455788999999987654 478999999999996643322 223567888888888899888877665544433
Q ss_pred ceeeeeeecccccCCCceEEEechHHHHHHH---------hcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCC
Q 003721 364 EEVGYAIRFEDCTGPDTVIKYMTDGMLLREI---------LIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPD 434 (800)
Q Consensus 364 ~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l---------~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~ 434 (800)
...-++....+....++.|++.|..|+-.-- +.-..-..++++++||+| .+....+..++..+....
T Consensus 375 ~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHc-- 450 (776)
T KOG1123|consen 375 QICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHC-- 450 (776)
T ss_pred ceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHh--
Confidence 3333443333444556778999988764211 000113578999999999 566556666666665543
Q ss_pred ceEEEeccCCChH--HHh--hhhcCCCcccCC-------CCcccee--EEeccccc---hhhHH----------------
Q 003721 435 LRLIVTSATLDAE--RFS--GYFFNCNIFSIP-------GRTFPVD--INYSRQEV---TDYLD---------------- 482 (800)
Q Consensus 435 ~kiI~lSATl~~~--~~~--~~f~~~~~~~i~-------g~~~~v~--~~~~~~~~---~~~~~---------------- 482 (800)
-+++|||+-.+ ++. .++.+..++... |..-.|. ..+.+... ..|+.
T Consensus 451 --KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~K 528 (776)
T KOG1123|consen 451 --KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNK 528 (776)
T ss_pred --hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcch
Confidence 28999998432 111 122222222211 1111111 01111110 11211
Q ss_pred -HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC-CceEE
Q 003721 483 -SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG-GRKVV 560 (800)
Q Consensus 483 -~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g-~~kVL 560 (800)
.+..-+++.|.. .+.+||||..+.-.....|-.| .--.+||..++.+|.+|++.|+-+ .++.|
T Consensus 529 FraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl--------------~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 529 FRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL--------------GKPFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred hHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc--------------CCceEECCCchhHHHHHHHhcccCCccceE
Confidence 122334455544 4667999988765544443322 223579999999999999999854 67899
Q ss_pred EeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC
Q 003721 561 VATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG 619 (800)
Q Consensus 561 VAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g 619 (800)
+-+-++.++||+|..++.|...- .--|..+=.||.||.-|..
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISS-----------------H~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISS-----------------HGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EEeeccCccccCCcccEEEEEcc-----------------cccchHHHHHHHHHHHHHh
Confidence 99999999999999999994322 1356778889999998876
No 131
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.47 E-value=8.3e-13 Score=124.46 Aligned_cols=136 Identities=33% Similarity=0.352 Sum_probs=95.5
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeeccccc------CC
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCT------GP 378 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~------~~ 378 (800)
+++++.+|||+|||+++..++.+.... ..+++++++|++.++.+....+...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 368999999999999998888876543 4569999999999999999888776642 22233222222222 45
Q ss_pred CceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 379 DTVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 379 ~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
...++++|++.+.+.+.... ....+++||+||+|. ..................+..+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 78899999999888775543 466799999999993 222222221122333345678899999996
No 132
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=4.1e-13 Score=158.52 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=119.9
Q ss_pred eEEEeccCCChH--HHhhhhcCCCcccCCCCccceeEEeccc---cchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH
Q 003721 436 RLIVTSATLDAE--RFSGYFFNCNIFSIPGRTFPVDINYSRQ---EVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEI 510 (800)
Q Consensus 436 kiI~lSATl~~~--~~~~~f~~~~~~~i~g~~~~v~~~~~~~---~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i 510 (800)
++-+||.|...+ .|... .+.+++.+|.........+... ...+.....+..+...+ ..+.++||||+|++.+
T Consensus 535 kLaGMTGTA~te~~Ef~~i-Y~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~s 611 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEI-YKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASVEVS 611 (1025)
T ss_pred hhcccCCCChhHHHHHHHH-hCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHH
Confidence 678999998543 44332 3455666665432222211111 11122233333333333 2467899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCC---Cee-----EEEeCC
Q 003721 511 DFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTID---GIF-----YVIDPG 582 (800)
Q Consensus 511 ~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip---~v~-----~VId~g 582 (800)
+.++..|... ++....+|+ .+.+|+..+..|+.+...|+||||+|+||+||+ +|. +||++.
T Consensus 612 E~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgte 680 (1025)
T PRK12900 612 ETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSE 680 (1025)
T ss_pred HHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCC
Confidence 9999999876 677788897 578899999999999999999999999999999 553 347666
Q ss_pred CccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccChHHh
Q 003721 583 FAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTESAY 632 (800)
Q Consensus 583 ~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~~~~ 632 (800)
. |.|...+.||.|||||.| ||.+..+++.++.
T Consensus 681 r------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 681 R------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred C------------------CchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 6 899999999999999999 9999999997664
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.46 E-value=1.9e-12 Score=152.25 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=220.4
Q ss_pred HHHHHHHHHH-HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceee---e
Q 003721 293 KLKNELIQAV-HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG---Y 368 (800)
Q Consensus 293 ~~Q~~~i~~i-~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg---~ 368 (800)
++|.++++.+ ..|++++|.+|+|||||.++.++++. -...++++++.|.-+.+..++..+.+.++.-.|..+- .
T Consensus 1146 ~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~g 1223 (1674)
T KOG0951|consen 1146 PIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTG 1223 (1674)
T ss_pred CceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCC
Confidence 3455555553 45789999999999999999888876 3456699999999999999998888877654443321 1
Q ss_pred eeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcc----hHHHHHHHHHhcCCCceEEEeccCC
Q 003721 369 AIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTD----VLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 369 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d----~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
....+...-....++++||+.+-.. ...+++++.|.||.|.-+--.+ ++..........-..+|++.+|..+
T Consensus 1224 e~s~~lkl~~~~~vii~tpe~~d~l----q~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~l 1299 (1674)
T KOG0951|consen 1224 ETSLDLKLLQKGQVIISTPEQWDLL----QSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSL 1299 (1674)
T ss_pred ccccchHHhhhcceEEechhHHHHH----hhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhh
Confidence 1111222234677999999976433 1678899999999994321111 1222222222334578999999888
Q ss_pred ChHHHhhhhcCCCccc--CCCCccceeEEeccccchhhHHHH-------HHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 003721 445 DAERFSGYFFNCNIFS--IPGRTFPVDINYSRQEVTDYLDSA-------LITVLQIHVDEPEGDILLFLTGQEEIDFACE 515 (800)
Q Consensus 445 ~~~~~~~~f~~~~~~~--i~g~~~~v~~~~~~~~~~~~~~~~-------l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~ 515 (800)
.+.+-.-++..+.++. ...|+.|.+++........+.... ...+.... ..+.+.+||+|+++++..++.
T Consensus 1300 ana~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~~~~~a~ 1377 (1674)
T KOG0951|consen 1300 ANARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKHARLVAV 1377 (1674)
T ss_pred ccchhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh--cCCCCeEEEeccchhhhhhhh
Confidence 5543223333344443 345677888777655443333221 12222222 246789999999999998876
Q ss_pred HHHHHHH------------hhC---CCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEe
Q 003721 516 SLCEKIK------------ALG---KDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVID 580 (800)
Q Consensus 516 ~L~~~l~------------~~~---~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId 580 (800)
.+-.... ... ...-...|. |-++++.++.-+-..|..|.++|+|...- -.|+-...--+||
T Consensus 1378 ~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv- 1453 (1674)
T KOG0951|consen 1378 DLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV- 1453 (1674)
T ss_pred ccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-
Confidence 5543211 000 011122333 88999999999999999999999998876 8888877666666
Q ss_pred CCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccC--hHHhhhhCCCCCCcch
Q 003721 581 PGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYT--ESAYRSEMSPTTIPEI 644 (800)
Q Consensus 581 ~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t--~~~~~~~~~~~~~pei 644 (800)
....+||.+..-. .+.+.+...||.|+|.| .|+|+.+.. ...|+.++...+.|--
T Consensus 1454 ---mgt~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lPve 1510 (1674)
T KOG0951|consen 1454 ---MGTQYYDGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLPVE 1510 (1674)
T ss_pred ---ecceeeccccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCchH
Confidence 6678999987643 38889999999999998 566666654 6677778888888743
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=2.9e-12 Score=151.08 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=85.7
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHh---CCcc
Q 003721 286 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEF---GCRL 362 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~---g~~~ 362 (800)
|+.|-+.++-.|++-.+.=++--|..+.||+|||+++.++++-..+ .|..+.++.|+..||.+-+..+...+ |..+
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v 154 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSV 154 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEE
Confidence 4445555556667777655566689999999999998888776533 46678889999999999888877665 4444
Q ss_pred cceeeeeeecccccCCCceEEEechHHH-----HHHHhc---CCCCCCCceEEEeccCc
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGML-----LREILI---DENLSQYSVIMLDEAHE 413 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~L-----l~~l~~---~~~l~~~~~IIiDEaHe 413 (800)
|...+.....+....-.+.|+|+|...+ .+.+.. +.....+.++||||+|.
T Consensus 155 ~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 4333222112222223588999999875 332211 12357899999999995
No 135
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.43 E-value=1.7e-11 Score=145.57 Aligned_cols=309 Identities=18% Similarity=0.165 Sum_probs=175.5
Q ss_pred HHhcCCchHHHHHHHHHHHc--------CCeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHHHHHHHHHHHH
Q 003721 285 QRRSLPIFKLKNELIQAVHD--------NQVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRVAATSVAKRVA 355 (800)
Q Consensus 285 ~r~~lPi~~~Q~~~i~~i~~--------~~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~la~qva~rv~ 355 (800)
+|..-|-|.+|.++.+.+.. |=.+|-.|.||||||.+=.-.++...-. .+.+..+..-.|.|..|....+.
T Consensus 403 ~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 403 QRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred cCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHH
Confidence 46667889999999988643 2256778999999998854444332111 22256666666666655444444
Q ss_pred HHhCCc---cccee----------------------ee--------------eeeccccc-----------C------CC
Q 003721 356 EEFGCR---LGEEV----------------------GY--------------AIRFEDCT-----------G------PD 379 (800)
Q Consensus 356 ~~~g~~---~g~~v----------------------g~--------------~~~~~~~~-----------~------~~ 379 (800)
+.+|.. +...| |. .+.++... + -.
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 333210 00001 10 01111100 0 13
Q ss_pred ceEEEechHHHHHHHhcCC----CC----CCCceEEEeccCcCCCCcchHHHHHHHHHh--cCCCceEEEeccCCChHH-
Q 003721 380 TVIKYMTDGMLLREILIDE----NL----SQYSVIMLDEAHERTINTDVLFGLLKQLVK--RRPDLRLIVTSATLDAER- 448 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~----~l----~~~~~IIiDEaHer~~~~d~l~~~lk~l~~--~~~~~kiI~lSATl~~~~- 448 (800)
..+.++|...++...+.-. .+ -.-++|||||+| .++... ...+.+++. .....++++||||+++..
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVH--aYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPD--DYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCc--cCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 4677888887776552211 11 123789999999 444332 233333332 234678999999999752
Q ss_pred ---HhhhhcCCC----cccCCCCccceeEEec---------------------------------------------ccc
Q 003721 449 ---FSGYFFNCN----IFSIPGRTFPVDINYS---------------------------------------------RQE 476 (800)
Q Consensus 449 ---~~~~f~~~~----~~~i~g~~~~v~~~~~---------------------------------------------~~~ 476 (800)
+..|..+.. ....++...++-.-+. ..+
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 222221110 0111111111111110 000
Q ss_pred -------chhhHHHHHHHHHHHhhcC----C-CCC----EEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCC
Q 003721 477 -------VTDYLDSALITVLQIHVDE----P-EGD----ILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSAL 540 (800)
Q Consensus 477 -------~~~~~~~~l~~v~~i~~~~----~-~g~----iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l 540 (800)
...+.......++.+|... + .|+ .||=+++.+.+-.++..|....... ...+.+..|||..
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~---~~~i~~~~yHSr~ 796 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEE---KYQIHLCCYHAQD 796 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhcccc---CCceeEEEecccC
Confidence 0112233344455555422 1 223 5677788888888888887764322 2357789999999
Q ss_pred CHHHHHhhcCcC--------------------------CCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCC
Q 003721 541 PSEIQSRIFEPA--------------------------PPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQR 594 (800)
Q Consensus 541 ~~~~R~~i~~~f--------------------------~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~ 594 (800)
+...|..+++.. ..+...|+|||.+.|.|+|++ .+.+|
T Consensus 797 ~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------- 860 (1110)
T TIGR02562 797 PLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--------------- 860 (1110)
T ss_pred hHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee---------------
Confidence 888877766432 125779999999999999986 22222
Q ss_pred cccccccccCHHhHHHHhcccCCCCC
Q 003721 595 LDSLVITPISQASALQRAGRAGRTGP 620 (800)
Q Consensus 595 ~~~l~~~p~S~~~~~QR~GRaGR~g~ 620 (800)
+.|.+..+.+||+||+.|.+.
T Consensus 861 -----~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 861 -----ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred -----eccCcHHHHHHHhhccccccc
Confidence 347889999999999999993
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.40 E-value=2.3e-12 Score=128.42 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=95.9
Q ss_pred CCchHHHHHHHHHHHc-------CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 289 LPIFKLKNELIQAVHD-------NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~-------~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
+.++++|.+++..+.+ ++.+++.+|||||||..+..++.+... ++++++|+..++.|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 3578899999999763 689999999999999998876666533 89999999999999998884333211
Q ss_pred ccce--------ee--------eeeecccccCCCceEEEechHHHHHHHhcC------------CCCCCCceEEEeccCc
Q 003721 362 LGEE--------VG--------YAIRFEDCTGPDTVIKYMTDGMLLREILID------------ENLSQYSVIMLDEAHE 413 (800)
Q Consensus 362 ~g~~--------vg--------~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~------------~~l~~~~~IIiDEaHe 413 (800)
.... .+ ..............+.+.|...+....... .....+++||+||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 1000 00 000001112346678889988887765321 1245778999999993
Q ss_pred CCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 414 RTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 414 r~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
.....- .+.+.. .+...+|+||||+.
T Consensus 158 -~~~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 158 -YPSDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp -THHHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred -cCCHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 332222 222222 56778999999985
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.40 E-value=9e-11 Score=142.40 Aligned_cols=134 Identities=11% Similarity=0.105 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcC-CCCHHHHHhhcCcCCCCC
Q 003721 478 TDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYS-ALPSEIQSRIFEPAPPGG 556 (800)
Q Consensus 478 ~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~-~l~~~~R~~i~~~f~~g~ 556 (800)
.+|.+.....+..+. ..+|++||+++|.+..+.+++.|... ...++ ..| +.+ +.++.+.|+.+.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~l-~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSHL-AQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcEE-EeCCCcc---HHHHHHHHHcCC
Confidence 345556666665554 34789999999999999988887532 22232 223 222 456788888888
Q ss_pred ceEEEeccchhhcCCCCC--eeEEEeCCCccceeecCC----------CCcccc--cccccCHHhHHHHhcccCCCC--C
Q 003721 557 RKVVVATNIAEASLTIDG--IFYVIDPGFAKQNVYNPK----------QRLDSL--VITPISQASALQRAGRAGRTG--P 620 (800)
Q Consensus 557 ~kVLVAT~iae~GIdip~--v~~VId~g~~k~~~yd~~----------~~~~~l--~~~p~S~~~~~QR~GRaGR~g--~ 620 (800)
..||++|..+-.|||+|+ ...||-.++......||- .|-+.+ ...|.-...+.|-+||.=|+. .
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 899999999999999973 455554555333222321 111111 122555677899999999988 5
Q ss_pred CeEEEc
Q 003721 621 GKCYRL 626 (800)
Q Consensus 621 G~~~~L 626 (800)
|..+.+
T Consensus 775 Gvv~il 780 (820)
T PRK07246 775 SAVLIL 780 (820)
T ss_pred EEEEEE
Confidence 765544
No 138
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.40 E-value=1.8e-12 Score=121.39 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=89.1
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecc-cccCCCceE
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFE-DCTGPDTVI 382 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~-~~~~~~~~I 382 (800)
+++..+|-..+|+|||..++--++...+..+.+++++.|||+++.++.+.+.. .. +.+..... .....+..|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~---~~----~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG---LP----VRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT---SS----EEEESTTSS----SSSSE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc---CC----cccCceeeeccccCCCcc
Confidence 56778999999999999755555555578899999999999999998887632 11 22222111 123456778
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChH
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAE 447 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~ 447 (800)
.+||.+.+.+.+.....+.+|++||+||+|--+..+=...+.++..... ...++|+||||++..
T Consensus 76 ~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 76 DVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp EEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT-
T ss_pred cccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCCC
Confidence 9999999988887766789999999999993222222345566666443 457899999999753
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=4.4e-11 Score=139.76 Aligned_cols=115 Identities=22% Similarity=0.198 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC-CceEEE
Q 003721 483 SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG-GRKVVV 561 (800)
Q Consensus 483 ~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g-~~kVLV 561 (800)
+.+..+...|. .+.|+||.|.+.+..+.++..|.+. ++..-.+++.-...+-.-|- ..| .-.|.|
T Consensus 414 Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTI 479 (925)
T PRK12903 414 AVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIA---KAGQKGAITI 479 (925)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCceeecccchhhHHHHHH---hCCCCCeEEE
Confidence 34444555553 3678999999999999999999775 44444555543223333332 334 347999
Q ss_pred eccchhhcCCCCCee--------EEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccCh
Q 003721 562 ATNIAEASLTIDGIF--------YVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYTE 629 (800)
Q Consensus 562 AT~iae~GIdip~v~--------~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t~ 629 (800)
|||+|+||.||.--. +||-+.. +-|..-=.|-.|||||.| ||.+-.+.+-
T Consensus 480 ATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 480 ATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred ecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEec
Confidence 999999999996222 7775555 777777789999999999 9987666653
No 140
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.31 E-value=2.7e-12 Score=110.03 Aligned_cols=72 Identities=40% Similarity=0.516 Sum_probs=69.2
Q ss_pred CeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHH
Q 003721 530 ELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 609 (800)
Q Consensus 530 ~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~ 609 (800)
++.+..+||++++++|..+++.|.+|..+||++|+++++|+|+|++++||.++. |.+...|.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 678999999999999999999999999999999999999999999999999888 99999999
Q ss_pred HHhcccCCCC
Q 003721 610 QRAGRAGRTG 619 (800)
Q Consensus 610 QR~GRaGR~g 619 (800)
|++||+||.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999976
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.25 E-value=3.3e-10 Score=133.36 Aligned_cols=127 Identities=17% Similarity=0.091 Sum_probs=83.4
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHH---HHhCCcc
Q 003721 286 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVA---EEFGCRL 362 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~---~~~g~~~ 362 (800)
++.+-++++-.|++-.+.-++--|..+.||.|||+++.++++-..+ .|..|-++.+...||..-+..+. +.+|..+
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL-~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsv 148 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL-TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTV 148 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh-cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCce
Confidence 4445555555667777666777899999999999998888764434 35677788899999987666544 4456555
Q ss_pred cceeeeeeecccccCCCceEEEechH-----HHHHHHhcC---CCCCCCceEEEeccCc
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDG-----MLLREILID---ENLSQYSVIMLDEAHE 413 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g-----~Ll~~l~~~---~~l~~~~~IIiDEaHe 413 (800)
|...+-....+....-.+.|+|+|.. .|.+.+... .....+.+.|||||+.
T Consensus 149 g~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 149 GLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred eeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 54332211222222345789999986 444443221 1356788999999995
No 142
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.24 E-value=9.1e-11 Score=138.22 Aligned_cols=135 Identities=10% Similarity=0.027 Sum_probs=91.6
Q ss_pred EEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhC-Ccccceeee---eeec---ccccCCCceE
Q 003721 310 LIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFG-CRLGEEVGY---AIRF---EDCTGPDTVI 382 (800)
Q Consensus 310 v~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g-~~~g~~vg~---~~~~---~~~~~~~~~I 382 (800)
..+.+|||||..+...+.+. +..++.+++++|...++.|+.+++.+.|| ..+...... ..++ .........|
T Consensus 165 ~~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 33446999999998777665 66688999999999999999999999997 443322211 1111 1223456788
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch----HHHHHHHHHhcCCCceEEEeccCCChHHHhh
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV----LFGLLKQLVKRRPDLRLIVTSATLDAERFSG 451 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~----l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~ 451 (800)
+++|-.-+. ..+.++++|||||-|+-++..+- -..-+-.......+.++|+.|||++.+.+..
T Consensus 244 ViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 244 VVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred EEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 888866442 24789999999999975544331 1011222223346889999999999886654
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.18 E-value=1.8e-09 Score=133.48 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=91.2
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCc
Q 003721 478 TDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGR 557 (800)
Q Consensus 478 ~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~ 557 (800)
..|.......+..+... .+|++|||++|.+..+.+++.|..... ..++.+.. . ++....|.++.+.|+.+..
T Consensus 734 ~~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 34555555566665433 478999999999999999998875421 01222322 2 3333457788888988888
Q ss_pred eEEEeccchhhcCCCCC--eeEEEeCCCccceeecCC----------CCcccc--cccccCHHhHHHHhcccCCCC--CC
Q 003721 558 KVVVATNIAEASLTIDG--IFYVIDPGFAKQNVYNPK----------QRLDSL--VITPISQASALQRAGRAGRTG--PG 621 (800)
Q Consensus 558 kVLVAT~iae~GIdip~--v~~VId~g~~k~~~yd~~----------~~~~~l--~~~p~S~~~~~QR~GRaGR~g--~G 621 (800)
.||++|..+..|||+|+ ...||-.++.....-||. .|-+.+ ...|.....+.|-+||.=|+. .|
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceE
Confidence 99999999999999997 477776665322111111 111111 112555677899999999988 56
Q ss_pred eEEEc
Q 003721 622 KCYRL 626 (800)
Q Consensus 622 ~~~~L 626 (800)
..+.|
T Consensus 886 ~v~il 890 (928)
T PRK08074 886 TVFVL 890 (928)
T ss_pred EEEEe
Confidence 65544
No 144
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.17 E-value=2.5e-09 Score=121.48 Aligned_cols=312 Identities=18% Similarity=0.135 Sum_probs=181.6
Q ss_pred CchHHHHHHHHHH----HcCCeEEEEccCCCchHHHHHHHHHH--hhccCCCeEEEecchHHHHHHHHHHHHHHh-CCcc
Q 003721 290 PIFKLKNELIQAV----HDNQVLILIGETGSGKTTQLAQYLAE--AGYTTKGKIGCTQPRRVAATSVAKRVAEEF-GCRL 362 (800)
Q Consensus 290 Pi~~~Q~~~i~~i----~~~~~viv~apTGSGKT~~~~~~lle--~~~~~~~~il~~~P~r~la~qva~rv~~~~-g~~~ 362 (800)
.+.+||-+-++.+ ..+-+.|+.-+.|-|||.|...++.. ......|.-+|++|.-.|.+-+. .+++.. +.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~-Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN-EFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH-HHHHhCCCcce
Confidence 4567788776654 45668999999999999885544432 21333678899999988876543 222222 2222
Q ss_pred cceeeee-----eecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch-HHHHHHHHHhcCCCce
Q 003721 363 GEEVGYA-----IRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV-LFGLLKQLVKRRPDLR 436 (800)
Q Consensus 363 g~~vg~~-----~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~-l~~~lk~l~~~~~~~k 436 (800)
-..+|.. .+-+........|+++|.++.++.-. -..--.++++|||||| |.-+... |...++.+.. ..
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~~----~n 319 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFKT----DN 319 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-HHhcCCceEEEechhh-hhcchhhHHHHHHHHhcc----cc
Confidence 2222311 01111123478899999999887521 1113467999999999 7766554 3344444432 23
Q ss_pred EEEeccCCC---------------------hHHHhhhhcCCCcc---------cCCCC--------------ccc-ee-E
Q 003721 437 LIVTSATLD---------------------AERFSGYFFNCNIF---------SIPGR--------------TFP-VD-I 470 (800)
Q Consensus 437 iI~lSATl~---------------------~~~~~~~f~~~~~~---------~i~g~--------------~~~-v~-~ 470 (800)
-+++|.|+= .+.|..||...... +...+ ..| -+ +
T Consensus 320 rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~ 399 (971)
T KOG0385|consen 320 RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELI 399 (971)
T ss_pred eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceee
Confidence 477788872 13455555331100 00000 000 00 0
Q ss_pred Eecccc--chhhHH-------------------H-----------------------------------------HHHHH
Q 003721 471 NYSRQE--VTDYLD-------------------S-----------------------------------------ALITV 488 (800)
Q Consensus 471 ~~~~~~--~~~~~~-------------------~-----------------------------------------~l~~v 488 (800)
.|.... ...+.. . .+..+
T Consensus 400 iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkL 479 (971)
T KOG0385|consen 400 IYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKL 479 (971)
T ss_pred EeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHH
Confidence 111100 000000 0 01111
Q ss_pred HHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC---CceEEEeccc
Q 003721 489 LQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG---GRKVVVATNI 565 (800)
Q Consensus 489 ~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g---~~kVLVAT~i 565 (800)
+.- ....+.++|||..=- .+-..|...+. ..++...-+-|+++.++|...++.|... +.-.+++|-+
T Consensus 480 L~~-Lk~~GhRVLIFSQmt----~mLDILeDyc~-----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 480 LPK-LKEQGHRVLIFSQMT----RMLDILEDYCM-----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred HHH-HHhCCCeEEEeHHHH----HHHHHHHHHHH-----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 111 112355788885422 23333333321 1267788899999999999999988643 4567889999
Q ss_pred hhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhh
Q 003721 566 AEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYR 633 (800)
Q Consensus 566 ae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~ 633 (800)
.+.|||+-..+.||-| |..-+ |..--++.+|+-|.|...+=++|||.|+...+
T Consensus 550 GGLGINL~aADtVIly--------DSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 550 GGLGINLTAADTVILY--------DSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccccccccEEEEe--------cCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 9999999999999933 33322 66667888899999888899999999977653
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.13 E-value=4.2e-08 Score=114.61 Aligned_cols=135 Identities=15% Similarity=0.039 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCC----C
Q 003721 480 YLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPP----G 555 (800)
Q Consensus 480 ~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~----g 555 (800)
|.+.....+..+.. ...|.+||-+++...++.+++.|...+ .+. +.+.|..++ +...++.|+. |
T Consensus 454 ~~~~~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~-~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGI--------PAE-IVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhc--------CCC-EEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 44444455555443 347899999999999999999987653 233 344555432 2334445554 5
Q ss_pred CceEEEeccchhhcCCC--------C--CeeEEEeCCCccceeecCC--------CCcccccccccCHHhHHHHhcccCC
Q 003721 556 GRKVVVATNIAEASLTI--------D--GIFYVIDPGFAKQNVYNPK--------QRLDSLVITPISQASALQRAGRAGR 617 (800)
Q Consensus 556 ~~kVLVAT~iae~GIdi--------p--~v~~VId~g~~k~~~yd~~--------~~~~~l~~~p~S~~~~~QR~GRaGR 617 (800)
...||++|+.+-.|||+ | .++.||-.-+.... -||- .|-..+...|...-.+.|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 2 36777644443221 1221 2223223346666778999999999
Q ss_pred CC----CCeEEEcc
Q 003721 618 TG----PGKCYRLY 627 (800)
Q Consensus 618 ~g----~G~~~~L~ 627 (800)
.. .|....|=
T Consensus 601 ~~~D~~~G~i~ilD 614 (636)
T TIGR03117 601 HPDMPQNRRIHMLD 614 (636)
T ss_pred cCCCcCceEEEEEe
Confidence 86 35544443
No 146
>COG4889 Predicted helicase [General function prediction only]
Probab=99.13 E-value=3e-10 Score=129.66 Aligned_cols=312 Identities=18% Similarity=0.161 Sum_probs=177.0
Q ss_pred CCchHHHHHHHHHHHc----CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCccc-
Q 003721 289 LPIFKLKNELIQAVHD----NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLG- 363 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~----~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g- 363 (800)
-.++++|++++++..+ |..-=+++..|+|||...+... +..- ..+|++++|...|..|..+.+...-...+-
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala--~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a 236 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALA--AARILFLVPSISLLSQTLREWTAQKELDFRA 236 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHh--hhheEeecchHHHHHHHHHHHhhccCcccee
Confidence 3467899999998653 4455677889999998875543 3322 268999999999999998887654322110
Q ss_pred ------ceeeee---eeccc-------------------ccCCCceEEEechHHHHHHHh-cCCCCCCCceEEEeccCcC
Q 003721 364 ------EEVGYA---IRFED-------------------CTGPDTVIKYMTDGMLLREIL-IDENLSQYSVIMLDEAHER 414 (800)
Q Consensus 364 ------~~vg~~---~~~~~-------------------~~~~~~~I~~~T~g~Ll~~l~-~~~~l~~~~~IIiDEaHer 414 (800)
..|+-+ +.+.+ ....+--++|+|.+.+.+.-. ....+..+++||.|||| |
T Consensus 237 ~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH-R 315 (1518)
T COG4889 237 SAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH-R 315 (1518)
T ss_pred EEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh-c
Confidence 001100 00000 111355678999988876553 23468999999999999 5
Q ss_pred CCCcchHHHHHHHHHhc-----CCCceEEEeccCCChH--HHh----------------hhhcCCCcccCCC--------
Q 003721 415 TINTDVLFGLLKQLVKR-----RPDLRLIVTSATLDAE--RFS----------------GYFFNCNIFSIPG-------- 463 (800)
Q Consensus 415 ~~~~d~l~~~lk~l~~~-----~~~~kiI~lSATl~~~--~~~----------------~~f~~~~~~~i~g-------- 463 (800)
+......-.--..+... -...+-+.||||+..- ... ..|+ +.|.--|
T Consensus 316 TtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG--eef~rl~FgeAv~rd 393 (1518)
T COG4889 316 TTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG--EEFHRLGFGEAVERD 393 (1518)
T ss_pred cccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc--hhhhcccHHHHHHhh
Confidence 43221100000000000 0123457899998410 000 0000 0000000
Q ss_pred --CccceeEEecc-------------ccchhhHHHHHHHHHHHh----hcC--------------CCCCEEEEcCCHHHH
Q 003721 464 --RTFPVDINYSR-------------QEVTDYLDSALITVLQIH----VDE--------------PEGDILLFLTGQEEI 510 (800)
Q Consensus 464 --~~~~v~~~~~~-------------~~~~~~~~~~l~~v~~i~----~~~--------------~~g~iLVF~~s~~~i 510 (800)
..|.|-+.-.. .+...........++-++ ... +..+.+-||.+.++.
T Consensus 394 lLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tS 473 (1518)
T COG4889 394 LLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTS 473 (1518)
T ss_pred hhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHH
Confidence 00111111000 011010001111111111 100 113467899888887
Q ss_pred HHHHHHHHHHHH----hhCCCCCCeEEEE--EcCCCCHHHHHhhcC---cCCCCCceEEEeccchhhcCCCCCeeEEEeC
Q 003721 511 DFACESLCEKIK----ALGKDVPELVVLP--VYSALPSEIQSRIFE---PAPPGGRKVVVATNIAEASLTIDGIFYVIDP 581 (800)
Q Consensus 511 ~~l~~~L~~~l~----~~~~~~~~~~v~~--lh~~l~~~~R~~i~~---~f~~g~~kVLVAT~iae~GIdip~v~~VId~ 581 (800)
..+++.+...+. ++-.+..++.+.. +.|.|...+|..... .|.+..++||----.+..|||+|..+-||
T Consensus 474 K~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi-- 551 (1518)
T COG4889 474 KQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI-- 551 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE--
Confidence 777776654432 2223344555554 448888888866543 56788999999889999999999999999
Q ss_pred CCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEE
Q 003721 582 GFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCY 624 (800)
Q Consensus 582 g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~ 624 (800)
+||| -.|+-+.+|-+||..|..+|+-|
T Consensus 552 ------Ff~p----------r~smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 552 ------FFDP----------RSSMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ------EecC----------chhHHHHHHHHHHHHHhCcCCcc
Confidence 4554 45778999999999999988643
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=4.7e-09 Score=123.59 Aligned_cols=128 Identities=18% Similarity=0.097 Sum_probs=85.6
Q ss_pred HHhcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHH---HHHhCCc
Q 003721 285 QRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRV---AEEFGCR 361 (800)
Q Consensus 285 ~r~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv---~~~~g~~ 361 (800)
.|+.+-+.++-.|++-++.=++--|..+.||-|||+++.++++-..+. |..|-++.+..-||..=+..+ -+.+|..
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-GkgVhVVTvNdYLA~RDae~m~~vy~~LGLt 156 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-GKGVHVVTVNDYLARRDAEWMGQVHRFLGLS 156 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCe
Confidence 345566666666788776656667999999999999998888766554 445666677777887655444 4455666
Q ss_pred ccceeeeeeecccccCCCceEEEechHHH-----HHHHhcC---CCCCCCceEEEeccCc
Q 003721 362 LGEEVGYAIRFEDCTGPDTVIKYMTDGML-----LREILID---ENLSQYSVIMLDEAHE 413 (800)
Q Consensus 362 ~g~~vg~~~~~~~~~~~~~~I~~~T~g~L-----l~~l~~~---~~l~~~~~IIiDEaHe 413 (800)
+|...+.....+....-.+.|+|+|+.-+ .+.+... .....+.+.|||||+.
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 55433222222223345788999999855 5555332 2367889999999996
No 148
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.11 E-value=3.9e-09 Score=123.02 Aligned_cols=292 Identities=20% Similarity=0.187 Sum_probs=167.0
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccC--CCce
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG--PDTV 381 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~--~~~~ 381 (800)
.+...+|.+|.|||||+++..|+.+..-..+.+++++..|+.|+.+++.++.... +.+.+-|......... +..+
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~~r 124 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRPYDR 124 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeeccccccccccccCe
Confidence 5668899999999999999998887644567799999999999999999986532 1111222211111111 2234
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcC--CCCc------chHHHHHHHHHhcCCCceEEEeccCCChH--HHhh
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHER--TINT------DVLFGLLKQLVKRRPDLRLIVTSATLDAE--RFSG 451 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer--~~~~------d~l~~~lk~l~~~~~~~kiI~lSATl~~~--~~~~ 451 (800)
++++ -..|.+. ....+.+|++|||||+-.- .+.+ .....+++.++.. .-++|+|-||++.. +|.+
T Consensus 125 Livq-IdSL~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tvdFl~ 199 (824)
T PF02399_consen 125 LIVQ-IDSLHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTVDFLA 199 (824)
T ss_pred EEEE-ehhhhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHHHHHH
Confidence 4444 4444333 2345788999999998630 0111 1223344444443 34789999999864 4444
Q ss_pred hhcCC-CcccCCCC----ccce-eEEeccc-----------cc----------------------hhhHHHHHHHHHHHh
Q 003721 452 YFFNC-NIFSIPGR----TFPV-DINYSRQ-----------EV----------------------TDYLDSALITVLQIH 492 (800)
Q Consensus 452 ~f~~~-~~~~i~g~----~~~v-~~~~~~~-----------~~----------------------~~~~~~~l~~v~~i~ 492 (800)
.+.+. ++..+.+. .|.- ...+.+. +. ......-...+..-.
T Consensus 200 ~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L 279 (824)
T PF02399_consen 200 SCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL 279 (824)
T ss_pred HhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH
Confidence 44221 11111000 0000 0000000 00 000001111111111
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCC
Q 003721 493 VDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTI 572 (800)
Q Consensus 493 ~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdi 572 (800)
..+..|-||++|...++.+++..... ...|+.++|.-+.. .+. .+ ++.+|++=|++...|+++
T Consensus 280 --~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv~-~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 280 --NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DVE-SW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred --hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---ccc-cc--cceeEEEEeceEEEEecc
Confidence 12566889999998888877766554 56788888876555 232 22 568999999999999999
Q ss_pred CCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHh
Q 003721 573 DGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAY 632 (800)
Q Consensus 573 p~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~ 632 (800)
....+=--+++.+...+ --+..+..|++||+-.......|..+.....
T Consensus 343 ~~~HF~~~f~yvk~~~~------------gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSY------------GPDMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred chhhceEEEEEecCCCC------------CCcHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 75532211222111111 2356678999999988887777776665433
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=2.3e-08 Score=119.00 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEe
Q 003721 483 SALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVA 562 (800)
Q Consensus 483 ~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVA 562 (800)
+.+..+...|.. +.||||-+.|.+..+.+++.|... ++.--.+++.....+-+-|-+.-..| .|-||
T Consensus 616 Aii~ei~~~~~~--GrPVLVGT~SVe~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIA 682 (1112)
T PRK12901 616 AVIEEITELSEA--GRPVLVGTTSVEISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIA 682 (1112)
T ss_pred HHHHHHHHHHHC--CCCEEEEeCcHHHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEe
Confidence 445555566543 678999999999999999998775 33333344443333444443433333 68999
Q ss_pred ccchhhcCCCC--------CeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-CCeEEEccC
Q 003721 563 TNIAEASLTID--------GIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-PGKCYRLYT 628 (800)
Q Consensus 563 T~iae~GIdip--------~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-~G~~~~L~t 628 (800)
||+|+||-||. +=-+||-+.. +-|..-=.|-.|||||.| ||.+-.+.+
T Consensus 683 TNMAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 683 TNMAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred ccCcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 99999999996 2246664444 888888999999999999 998766665
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.96 E-value=2.5e-07 Score=111.11 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcC----CC
Q 003721 479 DYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPA----PP 554 (800)
Q Consensus 479 ~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f----~~ 554 (800)
++.......+..+.. .+|.+|||++|.+..+.++..|.... +..++ .+|.. .+..+++.| ..
T Consensus 518 ~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~~---~~~~ll~~f~~~~~~ 583 (697)
T PRK11747 518 AHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGDQ---PRQRLLEKHKKRVDE 583 (697)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCCc---hHHHHHHHHHHHhcc
Confidence 456666666666665 35569999999999999998886531 22333 34542 345566444 45
Q ss_pred CCceEEEeccchhhcCCCCC--eeEEEeCCCccceeecCC----------CCccccc--ccccCHHhHHHHhcccCCCC-
Q 003721 555 GGRKVVVATNIAEASLTIDG--IFYVIDPGFAKQNVYNPK----------QRLDSLV--ITPISQASALQRAGRAGRTG- 619 (800)
Q Consensus 555 g~~kVLVAT~iae~GIdip~--v~~VId~g~~k~~~yd~~----------~~~~~l~--~~p~S~~~~~QR~GRaGR~g- 619 (800)
|...||++|..+..|||+|+ .+.||-.++.....-||. .|-+.+. ..|.-...+.|-+||.=|+.
T Consensus 584 ~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~ 663 (697)
T PRK11747 584 GEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ 663 (697)
T ss_pred CCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC
Confidence 77889999999999999987 678887666333222221 1111111 12445566899999999987
Q ss_pred -CCeEEEc
Q 003721 620 -PGKCYRL 626 (800)
Q Consensus 620 -~G~~~~L 626 (800)
.|..+.+
T Consensus 664 D~G~i~il 671 (697)
T PRK11747 664 DRGRVTIL 671 (697)
T ss_pred ceEEEEEE
Confidence 5765554
No 151
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.94 E-value=4.8e-08 Score=111.86 Aligned_cols=113 Identities=20% Similarity=0.330 Sum_probs=87.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCc--eEEEeccchhhcCCCCC
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGR--KVVVATNIAEASLTIDG 574 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~--kVLVAT~iae~GIdip~ 574 (800)
+.++|+|..++...+.+-..|.. ..++..+-+-|..+...|..+.+.|.++.. -.|++|-+.+.|+|+-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~--------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRR--------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHh--------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 44799999998888777766653 137888999999999999999999997753 45789999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHh
Q 003721 575 IFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAY 632 (800)
Q Consensus 575 v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~ 632 (800)
.+-|| +|||.-+ |.+-.++.-|+=|.|-...=.+|||.+....
T Consensus 618 AnRVI--------IfDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 618 ANRVI--------IFDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred CceEE--------EECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 99888 4444433 5555666667777766667789999985443
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.89 E-value=3.3e-07 Score=110.23 Aligned_cols=137 Identities=17% Similarity=0.136 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCc-
Q 003721 479 DYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGR- 557 (800)
Q Consensus 479 ~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~- 557 (800)
.+.......+..+... .+|.+|||++|.+..+.+++.+.... .......+|..+.+ .+++.|..+.-
T Consensus 462 ~~~~~~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCC
Confidence 3444445555555444 36699999999999999888886541 11234556665554 45555554443
Q ss_pred eEEEeccchhhcCCCCCe--eEEEeCCCccceeec----------CCCCcc--cccccccCHHhHHHHhcccCCCC--CC
Q 003721 558 KVVVATNIAEASLTIDGI--FYVIDPGFAKQNVYN----------PKQRLD--SLVITPISQASALQRAGRAGRTG--PG 621 (800)
Q Consensus 558 kVLVAT~iae~GIdip~v--~~VId~g~~k~~~yd----------~~~~~~--~l~~~p~S~~~~~QR~GRaGR~g--~G 621 (800)
-++|+|..+..|||+|+- ..||-.|+.-...-| .+.|.+ .....|.......|-+||+=|.- .|
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 899999999999999874 666666663332222 222211 12334667788999999999977 57
Q ss_pred eEEEcc
Q 003721 622 KCYRLY 627 (800)
Q Consensus 622 ~~~~L~ 627 (800)
.++.+=
T Consensus 610 ~ivllD 615 (654)
T COG1199 610 VIVLLD 615 (654)
T ss_pred EEEEec
Confidence 766653
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.84 E-value=9.6e-08 Score=113.85 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=86.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCC---CCceEEEeccchhhcCC
Q 003721 495 EPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPP---GGRKVVVATNIAEASLT 571 (800)
Q Consensus 495 ~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~---g~~kVLVAT~iae~GId 571 (800)
..+.+||||..=..-.+.++++|..+ ++..--+-|+++.+.|+..++.|.. .....|+||-+.+.|||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 34678999987777777777777665 6666778899999999999998864 46788999999999999
Q ss_pred CCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhC
Q 003721 572 IDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEM 636 (800)
Q Consensus 572 ip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~ 636 (800)
+-..+.||-++- -|| |..--++.-|+-|.|-...=.+|||.|+..++.+|
T Consensus 768 LatADTVIIFDS----DWN-----------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 768 LATADTVIIFDS----DWN-----------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred ccccceEEEeCC----CCC-----------cchHHHHHHHHHhhcccceEEEEEEecCCchHHHH
Confidence 998888884333 233 33333344444444444456799999988886654
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=3.1e-07 Score=110.97 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHH--HHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCC-
Q 003721 478 TDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEK--IKALGKDVPELVVLPVYSALPSEIQSRIFEPAPP- 554 (800)
Q Consensus 478 ~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~--l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~- 554 (800)
..+.......+..+... .+|.+|||+||....+.+++.+.+. ...+.. ...++.=..+ ..++..+++.|..
T Consensus 504 ~~~~~~l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~---~k~i~~E~~~--~~~~~~~l~~f~~~ 577 (705)
T TIGR00604 504 PSLVRNLGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEK---KKLIFVETKD--AQETSDALERYKQA 577 (705)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc---CCCEEEeCCC--cchHHHHHHHHHHH
Confidence 34555555555555444 3689999999999999888877642 111110 1112211111 1466777777743
Q ss_pred ---CCceEEEec--cchhhcCCCCC--eeEEEeCCCccceeecCCCCc--cc-----------ccccccCHHhHHHHhcc
Q 003721 555 ---GGRKVVVAT--NIAEASLTIDG--IFYVIDPGFAKQNVYNPKQRL--DS-----------LVITPISQASALQRAGR 614 (800)
Q Consensus 555 ---g~~kVLVAT--~iae~GIdip~--v~~VId~g~~k~~~yd~~~~~--~~-----------l~~~p~S~~~~~QR~GR 614 (800)
|.-.|++|+ ..+..|||+++ .+.||-.|+.-....||.... .. .-..........|-+||
T Consensus 578 ~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR 657 (705)
T TIGR00604 578 VSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGR 657 (705)
T ss_pred HhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCc
Confidence 456799999 89999999987 578887887543333322110 00 01112234567899999
Q ss_pred cCCCCCCe
Q 003721 615 AGRTGPGK 622 (800)
Q Consensus 615 aGR~g~G~ 622 (800)
+=|.....
T Consensus 658 ~IR~~~D~ 665 (705)
T TIGR00604 658 VIRHKDDY 665 (705)
T ss_pred cccCcCce
Confidence 99998433
No 155
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.82 E-value=7.7e-07 Score=104.52 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=68.9
Q ss_pred CeEEEEEcCCCCHHHHHhhcCcCCCC--C-ceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHH
Q 003721 530 ELVVLPVYSALPSEIQSRIFEPAPPG--G-RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA 606 (800)
Q Consensus 530 ~~~v~~lh~~l~~~~R~~i~~~f~~g--~-~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~ 606 (800)
++.++.+||.++..+|+.+.+.|.+- . .-.+.+|-+.+.||++=+...||-++. ...++
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~------------------dWNPa 680 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP------------------DWNPA 680 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC------------------CCCch
Confidence 78899999999999999999998643 2 445667888999999999999996666 56667
Q ss_pred hHHHHhcccCCCC---CCeEEEccChHH
Q 003721 607 SALQRAGRAGRTG---PGKCYRLYTESA 631 (800)
Q Consensus 607 ~~~QR~GRaGR~g---~G~~~~L~t~~~ 631 (800)
.=.|-++||=|.| +-..|+|.+...
T Consensus 681 ~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 681 VDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred hHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 7789999999999 567888887543
No 156
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.68 E-value=2.2e-06 Score=93.65 Aligned_cols=271 Identities=18% Similarity=0.191 Sum_probs=153.1
Q ss_pred chHHHHHHHH-HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeee
Q 003721 291 IFKLKNELIQ-AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYA 369 (800)
Q Consensus 291 i~~~Q~~~i~-~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~ 369 (800)
+.++|.+-+. ++..|..+++.-+.|-|||.|+..... .+.....+++++|--..- ..++.+...++...- +-..
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~--yyraEwplliVcPAsvrf-tWa~al~r~lps~~p--i~vv 273 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIAR--YYRAEWPLLIVCPASVRF-TWAKALNRFLPSIHP--IFVV 273 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHH--HHhhcCcEEEEecHHHhH-HHHHHHHHhcccccc--eEEE
Confidence 4567887665 478888999999999999998854332 245566888889964432 233333333332111 1000
Q ss_pred eeccccc---CCCceEEEechHHHHHHHhcCCC-CCCCceEEEeccCc-CCC---CcchHHHHHHHHHhcCCCceEEEec
Q 003721 370 IRFEDCT---GPDTVIKYMTDGMLLREILIDEN-LSQYSVIMLDEAHE-RTI---NTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 370 ~~~~~~~---~~~~~I~~~T~g~Ll~~l~~~~~-l~~~~~IIiDEaHe-r~~---~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.+..+.. .....|.+++.+++... .+.. -..+.+||+||.|. +.. .+.....+++.. .++|++|
T Consensus 274 ~~~~D~~~~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~a------khvILLS 345 (689)
T KOG1000|consen 274 DKSSDPLPDVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVA------KHVILLS 345 (689)
T ss_pred ecccCCccccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHh------hheEEec
Confidence 1111111 11245677788776432 2222 34599999999993 111 112233333333 3589999
Q ss_pred cCCChHHHh------------------hh---hcCCCc----ccCCCCc-------------------------c---ce
Q 003721 442 ATLDAERFS------------------GY---FFNCNI----FSIPGRT-------------------------F---PV 468 (800)
Q Consensus 442 ATl~~~~~~------------------~~---f~~~~~----~~i~g~~-------------------------~---~v 468 (800)
.|+...+-. +| +.+... +...|-+ . .-
T Consensus 346 GTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr 425 (689)
T KOG1000|consen 346 GTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRR 425 (689)
T ss_pred CCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccce
Confidence 998532111 11 111000 0001100 0 01
Q ss_pred eEEeccccc-----hhhHHH---------------------------HHHHHHHHh------hcCCCCCEEEEcCCHHHH
Q 003721 469 DINYSRQEV-----TDYLDS---------------------------ALITVLQIH------VDEPEGDILLFLTGQEEI 510 (800)
Q Consensus 469 ~~~~~~~~~-----~~~~~~---------------------------~l~~v~~i~------~~~~~g~iLVF~~s~~~i 510 (800)
.+.|..... .+.+.+ ++..+.+.. ...++.+.+||+....-.
T Consensus 426 ~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vL 505 (689)
T KOG1000|consen 426 EVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVL 505 (689)
T ss_pred EEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHH
Confidence 111111100 001110 011111111 223466799999999988
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCC-c-eEEEeccchhhcCCCCCeeEEEeCCC
Q 003721 511 DFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGG-R-KVVVATNIAEASLTIDGIFYVIDPGF 583 (800)
Q Consensus 511 ~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~-~-kVLVAT~iae~GIdip~v~~VId~g~ 583 (800)
+.+...++++ ++...-+.|..++..|...-+.|...+ . --|++-.++++|+|+.....||-.-+
T Consensus 506 d~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 506 DTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred HHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 8888888876 666777889999999999999987553 3 34667789999999999999985554
No 157
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.45 E-value=1.6e-05 Score=95.10 Aligned_cols=114 Identities=24% Similarity=0.352 Sum_probs=84.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC-CceEEE-eccchhhcCCCCC
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG-GRKVVV-ATNIAEASLTIDG 574 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g-~~kVLV-AT~iae~GIdip~ 574 (800)
..++||||.-+..++.+-..|.+. ..|.+.-.-+-|+.++.+|.++.++|.++ .++||+ +|-+.+.|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 356999999999888887777554 23455566789999999999999999998 777764 7789999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHHhhh
Q 003721 575 IFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESAYRS 634 (800)
Q Consensus 575 v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~~~~ 634 (800)
.+.||-..= -||| ..- .|-+-||-|-| .=.+|||.|+...+.
T Consensus 1414 ADTVVFvEH----DWNP-----------MrD---LQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVFVEH----DWNP-----------MRD---LQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEEEec----CCCc-----------hhh---HHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 999983221 2232 222 56666666666 456899999776543
No 158
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.36 E-value=1.6e-05 Score=87.06 Aligned_cols=171 Identities=25% Similarity=0.282 Sum_probs=110.2
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhh-ccCCCeE--EEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAG-YTTKGKI--GCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~-~~~~~~i--l~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
+++++.++||||.||||.+........ .....+| +-+-..|+-|.++.+..++.+|+++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 378999999999999999887776654 2333344 4456789999999999999998765
Q ss_pred eEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccCCChHHHhhhhcCCCcc
Q 003721 381 VIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSATLDAERFSGYFFNCNIF 459 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSATl~~~~~~~~f~~~~~~ 459 (800)
.++-++.-|...+. .+.++++|.||-+- |+........-++.+.... +.-..+++|||...+++...+.....+
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~ 338 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLF 338 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccC
Confidence 22334554444332 46788999999999 7776666666666666543 444578899999887766655433222
Q ss_pred cCCCCccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 003721 460 SIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQE 508 (800)
Q Consensus 460 ~i~g~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~ 508 (800)
.+. .+.+.+..+...+...+..+... .-++.-+.+|+.
T Consensus 339 ~i~------~~I~TKlDET~s~G~~~s~~~e~-----~~PV~YvT~GQ~ 376 (407)
T COG1419 339 PID------GLIFTKLDETTSLGNLFSLMYET-----RLPVSYVTNGQR 376 (407)
T ss_pred Ccc------eeEEEcccccCchhHHHHHHHHh-----CCCeEEEeCCCC
Confidence 222 12344444444444444444332 344555555543
No 159
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.24 E-value=3.5e-05 Score=91.25 Aligned_cols=126 Identities=19% Similarity=0.086 Sum_probs=77.4
Q ss_pred hcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHH---HHHHHHhCCccc
Q 003721 287 RSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVA---KRVAEEFGCRLG 363 (800)
Q Consensus 287 ~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva---~rv~~~~g~~~g 363 (800)
.-+-.+++--|++-.+.-+.--|.-+-||=|||+.+.++++=..+...|--++++.-- ||.--+ ..+-+.+|..+|
T Consensus 75 Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdY-LA~RDae~m~~l~~~LGlsvG 153 (822)
T COG0653 75 RVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDY-LARRDAEWMGPLYEFLGLSVG 153 (822)
T ss_pred HhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHH-hhhhCHHHHHHHHHHcCCcee
Confidence 3344555566788888777778999999999999988888766666555545544432 332222 223344455555
Q ss_pred ceeeeeeecccccCCCceEEEechHHH-----HHHHh---cCCCCCCCceEEEeccCc
Q 003721 364 EEVGYAIRFEDCTGPDTVIKYMTDGML-----LREIL---IDENLSQYSVIMLDEAHE 413 (800)
Q Consensus 364 ~~vg~~~~~~~~~~~~~~I~~~T~g~L-----l~~l~---~~~~l~~~~~IIiDEaHe 413 (800)
..+.+....+....-.+.|.|.|+..| .+.+. .+.......+.|+||++.
T Consensus 154 ~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDS 211 (822)
T COG0653 154 VILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDS 211 (822)
T ss_pred eccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhh
Confidence 444444333444445788999998733 33221 122355678888888874
No 160
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.21 E-value=8e-06 Score=82.74 Aligned_cols=126 Identities=30% Similarity=0.378 Sum_probs=81.9
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCe--EEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGK--IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~--il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
++++++||||+||||.+.......... +.+ ++++-..|+.|.++.+.+++.+|.++.. .+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~---------- 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTE---------- 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTT----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcc----------
Confidence 468899999999999998887776544 444 4466778999999999999999865411 0000
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCCceEEEeccCCChHHH
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLDAERF 449 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI~lSATl~~~~~ 449 (800)
..+..+.+........+++++|+||-+. |+.....+..-++.+.. ..+.-.++++|||...+.+
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0122333322222233579999999999 66554444444444443 3577788999999976643
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.20 E-value=5.7e-06 Score=89.20 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=71.6
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhc--cCC--CeEEEecchHHHHHHHHHHHHHHhCC-cccceeeeeeec-----c
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGY--TTK--GKIGCTQPRRVAATSVAKRVAEEFGC-RLGEEVGYAIRF-----E 373 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~--~~~--~~il~~~P~r~la~qva~rv~~~~g~-~~g~~vg~~~~~-----~ 373 (800)
..+..++.-++|+|||.++..++..... ... ..+++++|. .+..+....+.+.+.. .. ..+-|.... .
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc-ccccccccccccccc
Confidence 4467899999999999887766653211 111 259999999 6666777777666522 11 111111111 1
Q ss_pred cccCCCceEEEechHHHHHHH----hcCCCCCCCceEEEeccCcC-CCCcchHHHHHHHHHhcCCCceEEEeccCCChH
Q 003721 374 DCTGPDTVIKYMTDGMLLREI----LIDENLSQYSVIMLDEAHER-TINTDVLFGLLKQLVKRRPDLRLIVTSATLDAE 447 (800)
Q Consensus 374 ~~~~~~~~I~~~T~g~Ll~~l----~~~~~l~~~~~IIiDEaHer-~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~ 447 (800)
........++++|...+.... .....-.++++||+||+|.- ...+ .....+. ... ....+++|||+-..
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s-~~~~~l~---~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS-KRYKALR---KLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS-HHHHHHH---CCC-ECEEEEE-SS-SSS
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEecccccccccc-ccccccc---ccc-cceEEeeccccccc
Confidence 122356778999999887110 00001134899999999942 1222 2222222 222 45678899998543
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.14 E-value=6.7e-05 Score=92.96 Aligned_cols=133 Identities=18% Similarity=0.096 Sum_probs=81.6
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhh-ccCCCeEEEecchHHHHHHHHHHHHHHhCCccc---ceeeeeeecccccCCCce
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAG-YTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLG---EEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~-~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g---~~vg~~~~~~~~~~~~~~ 381 (800)
+.-+|.--||||||.....+..... ......|++++-|+.|-.|+...++..-....- ..-+-..+ +........
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk-~~l~~~~~~ 352 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELK-ELLEDGKGK 352 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHH-HHHhcCCCc
Confidence 4689999999999977543322211 134569999999999999999887653311110 00000000 011123557
Q ss_pred EEEechHHHHHHHhcCC---CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 382 IKYMTDGMLLREILIDE---NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
|+++|-+-+-....... .-.+-=+||+|||| |+-.... -..++. ..++...+++|.|+
T Consensus 353 ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~-~~~~~~---~~~~a~~~gFTGTP 413 (962)
T COG0610 353 IIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGEL-AKLLKK---ALKKAIFIGFTGTP 413 (962)
T ss_pred EEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHH-HHHHHH---HhccceEEEeeCCc
Confidence 99999887766664431 12333479999999 7765433 333333 34568899999999
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.12 E-value=8.5e-06 Score=82.70 Aligned_cols=121 Identities=27% Similarity=0.336 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHcC--CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeee
Q 003721 292 FKLKNELIQAVHDN--QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYA 369 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~--~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~ 369 (800)
.+-|.+++..+..+ +.++|.|+.|+|||+.+-. +.+.....+.+|+++.|+..++..+.+.. +...
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g~~v~~~apT~~Aa~~L~~~~----~~~a------- 70 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAGKRVIGLAPTNKAAKELREKT----GIEA------- 70 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--EEEEESSHHHHHHHHHHH----TS-E-------
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEEECCcHHHHHHHHHhh----Ccch-------
Confidence 45689999988543 4788999999999987643 55554556679999999999988866652 2111
Q ss_pred eecccccCCCceEEEechHHHHHHHhc-----CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 370 IRFEDCTGPDTVIKYMTDGMLLREILI-----DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 370 ~~~~~~~~~~~~I~~~T~g~Ll~~l~~-----~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
.|-..++..... ...+...++||||||- +++...+..+++.+.. .+.++|++-=+
T Consensus 71 ---------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 71 ---------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp ---------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ---------------hhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 011111000000 0015677899999999 7777766666655533 35676666543
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.12 E-value=0.0002 Score=80.26 Aligned_cols=227 Identities=17% Similarity=0.097 Sum_probs=144.1
Q ss_pred CceEEEechHHHHHHHhc------CC-CCCCCceEEEeccCcC-CCCcchHHHHHHHHHhcCC-----------------
Q 003721 379 DTVIKYMTDGMLLREILI------DE-NLSQYSVIMLDEAHER-TINTDVLFGLLKQLVKRRP----------------- 433 (800)
Q Consensus 379 ~~~I~~~T~g~Ll~~l~~------~~-~l~~~~~IIiDEaHer-~~~~d~l~~~lk~l~~~~~----------------- 433 (800)
.++|++++|=-|...+.. +. .|+.+.++|||.||-- |-+.+.+..+++.+.....
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 678999999888766643 11 4899999999999931 2334455555555433221
Q ss_pred ----CceEEEeccCCChH---HHhhhhcCC----Cc---cc----CCCCccceeEEeccccchhhH---H----HHHHHH
Q 003721 434 ----DLRLIVTSATLDAE---RFSGYFFNC----NI---FS----IPGRTFPVDINYSRQEVTDYL---D----SALITV 488 (800)
Q Consensus 434 ----~~kiI~lSATl~~~---~~~~~f~~~----~~---~~----i~g~~~~v~~~~~~~~~~~~~---~----~~l~~v 488 (800)
-.|+|++|+...++ .+..+..|. .+ .. +..-..++...|...+..+.. + --...+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 15899999998875 222222221 00 00 111112333334332222111 1 112233
Q ss_pred HHHhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchh
Q 003721 489 LQIHV-DEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAE 567 (800)
Q Consensus 489 ~~i~~-~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae 567 (800)
+.... ....+.+|||+|+--+--.+...|.+. ++....+|--.+..+-.+.-..|..|+.+||+-|-=+-
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~H 361 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFH 361 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHh
Confidence 33333 556788999999998888877777643 67778888888888888888999999999999996332
Q ss_pred --hcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-------CCeEEEccChHHh
Q 003721 568 --ASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-------PGKCYRLYTESAY 632 (800)
Q Consensus 568 --~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-------~G~~~~L~t~~~~ 632 (800)
+=..|.+|+.||-||+ |..+.=|...++-.+... ...|..||++-+.
T Consensus 362 FfrRy~irGi~~viFY~~------------------P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 362 FFRRYRIRGIRHVIFYGP------------------PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred hhhhceecCCcEEEEECC------------------CCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 4467889999999998 655554444443332222 5789999998665
No 165
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.05 E-value=0.00028 Score=81.69 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=85.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCC--ceEEEeccchhhcCCCCC
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGG--RKVVVATNIAEASLTIDG 574 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~--~kVLVAT~iae~GIdip~ 574 (800)
+.+||+|..=-...+.+-..|..+ ++..+-+-|+.+-.+|+.++..|-..+ .-.|++|-+.+.|||+-+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccc
Confidence 456888854333333332233222 677788899999999999999997653 367889999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhh
Q 003721 575 IFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRS 634 (800)
Q Consensus 575 v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~ 634 (800)
.++||-++. .|| |..--++.-|+-|.|.+.|=.+|+|.++...+.
T Consensus 848 An~VIihD~----dFN-----------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 848 ANTVIIHDI----DFN-----------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred cceEEEeec----CCC-----------CcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 999996666 444 555567777888888888999999999876654
No 166
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=5.5e-05 Score=84.17 Aligned_cols=128 Identities=21% Similarity=0.266 Sum_probs=80.7
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeE--EEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCC
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKI--GCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD 379 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~i--l~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~ 379 (800)
.++++++||||+||||.+.......... .+.+| +.+-+.|..+..+.+.+++.+|.++. +
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~------------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--A------------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--e-------------
Confidence 4689999999999999987766543222 23344 44567788888888888777765531 1
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCC-ceEEEeccCCChHHHhhhhcC
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPD-LRLIVTSATLDAERFSGYFFN 455 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~-~kiI~lSATl~~~~~~~~f~~ 455 (800)
..++..+...+. .+.++++|+||++. |+......+.-++.+.. ..++ -.++++|||.....+.+.|..
T Consensus 239 ----~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 239 ----IESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ----eCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 112233333222 24689999999999 55433222333333333 3333 478999999987766665543
No 167
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=6.4e-05 Score=82.30 Aligned_cols=191 Identities=16% Similarity=0.179 Sum_probs=105.8
Q ss_pred CCCCCCchhhhHHHHHHhhcCCCCCCcchHHHhhhcCCCCcCcCChh-----HHHHHHhcCCchHHHHHHHHHHHcCCeE
Q 003721 234 WEDPMPETGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKL-----SIQEQRRSLPIFKLKNELIQAVHDNQVL 308 (800)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~r~~lPi~~~Q~~~i~~i~~~~~v 308 (800)
|++..+. ++|...+...++.+..+..+.+............... -....+..+|+.. .+ .+..++.+
T Consensus 138 ~~~~~~~---~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~----~~-~~~~~~ii 209 (407)
T PRK12726 138 REEREQN---SDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVED----SF-DLSNHRII 209 (407)
T ss_pred hhhhccc---HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCC----Cc-eecCCeEE
Confidence 8654333 3677777777777777777765443210010101111 1111222233321 01 13457889
Q ss_pred EEEccCCCchHHHHHHHHHHhhccCCCeEE--EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEec
Q 003721 309 ILIGETGSGKTTQLAQYLAEAGYTTKGKIG--CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMT 386 (800)
Q Consensus 309 iv~apTGSGKT~~~~~~lle~~~~~~~~il--~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T 386 (800)
+++||||+||||.+....... ...+.++. -+-|.|..|.++.+..++.+++++- ...+
T Consensus 210 ~lvGptGvGKTTt~akLA~~l-~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-------------------~~~d 269 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQL-LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-------------------VATS 269 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-------------------ecCC
Confidence 999999999999987766543 33344444 3457788777766666666553220 1123
Q ss_pred hHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHH-hcCCCceEEEeccCCChHHHhhhh
Q 003721 387 DGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLV-KRRPDLRLIVTSATLDAERFSGYF 453 (800)
Q Consensus 387 ~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~-~~~~~~kiI~lSATl~~~~~~~~f 453 (800)
+.-+.+.+..-.....+++|+||=+- |+....-++.-++.+. ...|+.-++++|||.........+
T Consensus 270 p~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 270 PAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 44444433222234678999999998 5443333333344443 335666678899988776555543
No 168
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=8.1e-05 Score=81.78 Aligned_cols=123 Identities=21% Similarity=0.322 Sum_probs=75.8
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE--ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceE
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC--TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 382 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~--~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I 382 (800)
.+.+.++||||+||||.+....... ...+.++++ +-|.|+.+.++.+..++..|+++ +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L-~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~ 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------I 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------E
Confidence 3688999999999999987766543 334445543 33677777766666666655432 1
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcc-hHHHHHHHHHhcCCCceEEEeccCCChHH
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTD-VLFGLLKQLVKRRPDLRLIVTSATLDAER 448 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d-~l~~~lk~l~~~~~~~kiI~lSATl~~~~ 448 (800)
...++..+.+.+..-....++++|+||-+- |..... .+..+.+.+....|+-.++++|||.....
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 122455554444222122368999999998 554433 34444443434456667788999986543
No 169
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.02 E-value=0.00073 Score=82.00 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=81.8
Q ss_pred cCCchHHHHHHHHHHHc-CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCccccee
Q 003721 288 SLPIFKLKNELIQAVHD-NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEV 366 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~-~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~v 366 (800)
...+.+-|.+++..+.. ++.++|+|+.|+||||.+-. +.+.....+..|++++|+-.+|..+. +..|...
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~a---- 420 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEAAGYRVIGAALSGKAAEGLQ----AESGIES---- 420 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHhCCCeEEEEeCcHHHHHHHH----hccCCce----
Confidence 35678899999998876 57899999999999988644 44443445678999999988776543 2222210
Q ss_pred eeeeecccccCCCceEEEechHHHHHHHh-cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 367 GYAIRFEDCTGPDTVIKYMTDGMLLREIL-IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 367 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~-~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.|-..++..+. ....+...++|||||+- +++...+..+++.... .+.++|++-
T Consensus 421 ------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 421 ------------------RTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred ------------------eeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 12222211111 12236788999999999 8888877777665543 356666655
No 170
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=1.1e-05 Score=75.75 Aligned_cols=117 Identities=19% Similarity=0.325 Sum_probs=63.2
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhcc-----CCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCC
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYT-----TKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP 378 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~-----~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~ 378 (800)
+++.++|.||+|+|||+.+-.++.+.... ....+.+..|...-...++..+.+.++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 45689999999999999987777654221 22234455665555667777777777644321
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 379 DTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 379 ~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
-.+...+.+.+.....-....+|||||+|.-. . .-.+..++.+.. ..++++|+..-
T Consensus 69 -----~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 -----RQTSDELRSLLIDALDRRRVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGT 124 (131)
T ss_dssp -----TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEES
T ss_pred -----cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEEC
Confidence 11233333322211111122799999999421 3 444455555544 56676655543
No 171
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=0.00037 Score=79.00 Aligned_cols=126 Identities=29% Similarity=0.328 Sum_probs=77.4
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhh-ccCCCeEEE--ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAG-YTTKGKIGC--TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~-~~~~~~il~--~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
.+++++++||||+||||.+........ ...+.+|.+ +-|.|..+.+..+.+++.+++++-
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----------------
Confidence 467899999999999999887666553 233445443 446787777777777776664331
Q ss_pred eEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-c-CCCceEEEeccCCChHHHhhh
Q 003721 381 VIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-R-RPDLRLIVTSATLDAERFSGY 452 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~-~~~~kiI~lSATl~~~~~~~~ 452 (800)
...++.-+...+. .+.++++||||.+- |..........+..+.. . .+.-.++++|||.....+...
T Consensus 283 --~~~~~~~l~~~l~---~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 283 --VVYDPKELAKALE---QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred --ccCCHHhHHHHHH---HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 0122333333332 23478999999998 33332223333444433 2 344568899999987655543
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.93 E-value=7.2e-06 Score=96.99 Aligned_cols=212 Identities=17% Similarity=0.177 Sum_probs=131.4
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHHHHHHHHHHHHHHhCCc---ccceeeeeeecccccCCCce
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRVAATSVAKRVAEEFGCR---LGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~la~qva~rv~~~~g~~---~g~~vg~~~~~~~~~~~~~~ 381 (800)
.++++-+|||||||..+...+...... .+.+++++.|..+|+.+-..++.+.+-.+ ++...|-. ..+-..-.++.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~-~pd~~~v~~~~ 1022 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDV-TPDVKAVREAD 1022 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCcc-CCChhheecCc
Confidence 467889999999999988877765433 34599999999999999888887766433 22222211 11112224577
Q ss_pred EEEechHHH---HHHHhcCCCCCCCceEEEeccCcCCCCcc-hHHHHHHHHH----hcCCCceEEEeccCC-ChHHHhhh
Q 003721 382 IKYMTDGML---LREILIDENLSQYSVIMLDEAHERTINTD-VLFGLLKQLV----KRRPDLRLIVTSATL-DAERFSGY 452 (800)
Q Consensus 382 I~~~T~g~L---l~~l~~~~~l~~~~~IIiDEaHer~~~~d-~l~~~lk~l~----~~~~~~kiI~lSATl-~~~~~~~~ 452 (800)
++++|+... .|.+.....+.+++.+|+||.|+-+-+-. ++..+..... ...+.++++++|--+ ++..+++|
T Consensus 1023 ~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~w 1102 (1230)
T KOG0952|consen 1023 IVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADW 1102 (1230)
T ss_pred eEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHH
Confidence 889998854 34455566789999999999995333311 2211111111 112456677665444 56777777
Q ss_pred hcCCCc--ccCCCCccceeEEeccccchhhHHHHH---H-HHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHH
Q 003721 453 FFNCNI--FSIPGRTFPVDINYSRQEVTDYLDSAL---I-TVLQIHVDEPEGDILLFLTGQEEIDFACESLC 518 (800)
Q Consensus 453 f~~~~~--~~i~g~~~~v~~~~~~~~~~~~~~~~l---~-~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~ 518 (800)
++..+. +...-++.|.++++...|...|..... . ....+....+..++|||+.++....-.+..|.
T Consensus 1103 l~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1103 LNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLI 1174 (1230)
T ss_pred hCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHH
Confidence 766555 333456677777777776533332211 1 22223334556789999999887665555443
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.87 E-value=3.9e-05 Score=65.17 Aligned_cols=54 Identities=30% Similarity=0.433 Sum_probs=43.0
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHH
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRV 354 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv 354 (800)
++..++.++|.||.|||||+.+...+.+.... .+.+|+++.|++.++.++.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 44446778889999999998877777665321 1568999999999999999887
No 174
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00017 Score=79.62 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=80.0
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCC-CeEEEe--cchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCC
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTK-GKIGCT--QPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD 379 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~-~~il~~--~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~ 379 (800)
..+.+++++||||+||||.+...........+ .+|.++ -+.|..+.+..+.+++.+|.++.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---------------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---------------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----------------
Confidence 45789999999999999998877766543333 344432 34577788888888887765431
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccCCChHHH
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSATLDAERF 449 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSATl~~~~~ 449 (800)
.+.+++-+...+. .+.++++|+||++- |....+.+...+..+... .+.-.++++|||...+.+
T Consensus 199 ---~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 199 ---AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ---ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 1112222222221 24678999999998 554445566666665432 345578999999976543
No 175
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.80 E-value=0.00017 Score=87.14 Aligned_cols=123 Identities=24% Similarity=0.257 Sum_probs=79.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCC--CeEEEecchHHHHHHHHHHHHHHhCCccccee
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTK--GKIGCTQPRRVAATSVAKRVAEEFGCRLGEEV 366 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~--~~il~~~P~r~la~qva~rv~~~~g~~~g~~v 366 (800)
..+.+-|.+++..+..++.++|.|+.|+||||.+-. +++.....+ ..|++++||--+|..+ .+..|...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~-i~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g~~a---- 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRA-IIELAEELGGLLPVGLAAPTGRAAKRL----GEVTGLTA---- 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHHHHcCCCceEEEEeCchHHHHHH----HHhcCCcc----
Confidence 456677999999999999999999999999987743 333323334 5788899998888644 33333211
Q ss_pred eeeeecccccCCCceEEEechHHHHHHHh------cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 367 GYAIRFEDCTGPDTVIKYMTDGMLLREIL------IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 367 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~------~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
.|-..++.... ........++||||||+ |++...+..+++.+ .++.++|++
T Consensus 393 ------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~~---~~~~rlilv 449 (720)
T TIGR01448 393 ------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAAL---PDHARLLLV 449 (720)
T ss_pred ------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHhC---CCCCEEEEE
Confidence 01111111000 00113467899999999 88887776666533 456777776
Q ss_pred ccC
Q 003721 441 SAT 443 (800)
Q Consensus 441 SAT 443 (800)
-=+
T Consensus 450 GD~ 452 (720)
T TIGR01448 450 GDT 452 (720)
T ss_pred Ccc
Confidence 533
No 176
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.80 E-value=0.0024 Score=78.79 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=83.5
Q ss_pred hcCCchHHHHHHHHHHHc-CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccce
Q 003721 287 RSLPIFKLKNELIQAVHD-NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEE 365 (800)
Q Consensus 287 ~~lPi~~~Q~~~i~~i~~-~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~ 365 (800)
..+.+.+-|.+++..+.. ++.++|+|+.|+||||.+ ..+.+.+...+.+|+.++|+-.+|..+.. ..|..
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L~e----~tGi~---- 413 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENLEG----GSGIA---- 413 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHHhh----ccCcc----
Confidence 346788899999998877 457899999999999974 44555444456789999999887755432 22211
Q ss_pred eeeeeecccccCCCceEEEechHHHHHHHh-cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 366 VGYAIRFEDCTGPDTVIKYMTDGMLLREIL-IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 366 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~-~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
-.|-..++..+. ....+...++|||||+- |+++..+..+++.... ...++|++-=+
T Consensus 414 ------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~~--~garvVLVGD~ 470 (988)
T PRK13889 414 ------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAAD--AGAKVVLVGDP 470 (988)
T ss_pred ------------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence 012222221111 12246678999999999 8888877777765543 45677766533
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.78 E-value=0.00012 Score=74.19 Aligned_cols=57 Identities=26% Similarity=0.225 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHH
Q 003721 290 PIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVA 346 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~l 346 (800)
|....|..+++++.+++.+++.||.|||||+.+....++..... -.+++++-|....
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 66788999999999999999999999999999888887764432 2388888887643
No 178
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00076 Score=77.04 Aligned_cols=128 Identities=21% Similarity=0.280 Sum_probs=73.2
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEE--ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccC
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGC--TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG 377 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~--~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~ 377 (800)
.+..++.+.++||||+||||.+........... +.+|.+ +-+.|..+.++.+.....+++.+.
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-------------- 411 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-------------- 411 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--------------
Confidence 345788999999999999999876665433322 234443 335677666555554443332210
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChHHHhh
Q 003721 378 PDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSG 451 (800)
Q Consensus 378 ~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~ 451 (800)
...+.+.+...+. .+.++++||||.+- ++.....+...+..+........+++++++.....+..
T Consensus 412 -----~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~e 476 (559)
T PRK12727 412 -----EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDE 476 (559)
T ss_pred -----ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHH
Confidence 0112233333332 24579999999998 44333333333444433334567889999986554443
No 179
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.76 E-value=0.00019 Score=84.34 Aligned_cols=135 Identities=22% Similarity=0.271 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhh--ccC--CCeEEEecchHHHHHHHHHHHHHHhCCcccceeee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAG--YTT--KGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGY 368 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~--~~~--~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~ 368 (800)
..|..++.....++.++|+|+.|+||||.+...+.... ... +.+|++++||--+|..+.+.+..... .+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 46888999999999999999999999998765543221 111 24799999999998887776654331 11000
Q ss_pred eeecccccCCCceEEEechHHHHHHHh-------cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 369 AIRFEDCTGPDTVIKYMTDGMLLREIL-------IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 369 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~-------~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
........+...|-..++.... .......+++||||||= |++...+..+++.+ .+..|+|++-
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~al---~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKAL---PPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHhc---CCCCEEEEEC
Confidence 0000000011223222222111 11123468999999998 88887776666543 4567777665
No 180
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.76 E-value=0.002 Score=71.04 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCCCHHHHHhhcCcCCCC--CceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHH
Q 003721 529 PELVVLPVYSALPSEIQSRIFEPAPPG--GRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA 606 (800)
Q Consensus 529 ~~~~v~~lh~~l~~~~R~~i~~~f~~g--~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~ 606 (800)
.++.+.-+-|+|++..|...++.|.+. .+-.||+-.+.+..+|+-....|+..+. |...+
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP------------------WWNpa 722 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP------------------WWNPA 722 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc------------------cccHH
Confidence 478899999999999999999999876 4455677788888889999999986665 55555
Q ss_pred hHHH---HhcccCCCCCCeEEEccChHHhhh
Q 003721 607 SALQ---RAGRAGRTGPGKCYRLYTESAYRS 634 (800)
Q Consensus 607 ~~~Q---R~GRaGR~g~G~~~~L~t~~~~~~ 634 (800)
--.| |+-|.|.-.|-+.++|+-+...+.
T Consensus 723 Ve~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 723 VEWQAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred HHhhhhhhHHhhcCccceeEEEeehhccHHH
Confidence 5555 445555555888999988765543
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.74 E-value=0.00018 Score=75.05 Aligned_cols=58 Identities=28% Similarity=0.274 Sum_probs=45.0
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHH
Q 003721 288 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRV 345 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~ 345 (800)
.-|....|..++.++.++..+++.||+|||||+.+....++..... -.+++++-|...
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 3566778999999999999999999999999999887777654332 236777767654
No 182
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00053 Score=76.43 Aligned_cols=123 Identities=21% Similarity=0.200 Sum_probs=76.7
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEE--EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceE
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG--CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 382 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il--~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I 382 (800)
+..++++||||+||||++..++.......+.+|. -.-+.|..+..+.++.++..|.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~------------------ 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP------------------ 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeee------------------
Confidence 4578899999999999998888765444454554 34577888888888887777643210
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc----CCCceEEEeccCCChHHHhh
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR----RPDLRLIVTSATLDAERFSG 451 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~----~~~~kiI~lSATl~~~~~~~ 451 (800)
......+...+. -..+++|+||=+. |+....-...-+..+... .+.-.++++|||........
T Consensus 285 -~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 285 -VKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred -hHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 001122223222 2578999999987 443333333333333332 23457899999997754433
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.71 E-value=9.9e-05 Score=83.51 Aligned_cols=64 Identities=22% Similarity=0.411 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHcC-CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHH
Q 003721 291 IFKLKNELIQAVHDN-QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVA 355 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~-~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~ 355 (800)
+.+.|.+++....++ ...+|.||+|+|||+.+...+... ...+.+|+|+.|+.+++..+..|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCchHHHHHHHHHhc
Confidence 345588899987777 567899999999998887777665 5667899999999999999888744
No 184
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.71 E-value=0.00028 Score=85.57 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=78.4
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHHHHHHHHHHH-----HHhCCcccc-eee---eeeec--
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVAATSVAKRVA-----EEFGCRLGE-EVG---YAIRF-- 372 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~la~qva~rv~-----~~~g~~~g~-~vg---~~~~~-- 372 (800)
+.++.+.++||+|||.++...+++..... -.+.++++|+.+.-..+.+-+. +.|....+. .+- |...-
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 35899999999999998887777653332 2389999999988776664433 122211111 111 11100
Q ss_pred -------ccc----------cCCCceEEEechHHHHHHHhc-CC---C-----------C-CCCceEEEeccCcCCCCcc
Q 003721 373 -------EDC----------TGPDTVIKYMTDGMLLREILI-DE---N-----------L-SQYSVIMLDEAHERTINTD 419 (800)
Q Consensus 373 -------~~~----------~~~~~~I~~~T~g~Ll~~l~~-~~---~-----------l-~~~~~IIiDEaHer~~~~d 419 (800)
... ......|.++|.+++-..... .. . + ..--+||+||.|. ++++
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~--~~~~ 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR--FPRD 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC--CCcc
Confidence 000 011468889999988543220 00 0 1 1113799999993 3321
Q ss_pred hHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 420 VLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 420 ~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
...+..+....|.. ++.+|||.+.
T Consensus 217 --~k~~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 --NKFYQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred --hHHHHHHHhcCccc-EEEEeeecCC
Confidence 11234455556655 5669999975
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.70 E-value=0.00014 Score=80.72 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=61.1
Q ss_pred CeEEEEccCCCchHHHHHHHHHHh-hccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEA-GYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKY 384 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~-~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~ 384 (800)
+.++|.|..|||||..+...+.+. ....+..++++.+...+...+...+.+... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 478999999999998876655554 134566888999999998888877765440 00011112
Q ss_pred echHHHHHHH-hcCCCCCCCceEEEeccCcCCCC
Q 003721 385 MTDGMLLREI-LIDENLSQYSVIMLDEAHERTIN 417 (800)
Q Consensus 385 ~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~~~ 417 (800)
..+..+.... ........+++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 2233332222 133457899999999999 5544
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.67 E-value=0.00022 Score=84.04 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhc---cCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeee
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGY---TTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYA 369 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~---~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~ 369 (800)
++|..++.....++.++|.|++|+||||.+...+..... .....|+++.||.-+|..+.+.+..... .++.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~----- 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL----- 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc-----
Confidence 578999999899999999999999999987655443211 1234788999999999888777654331 1100
Q ss_pred eecccccCCCceEEEechHHHHHHHh-------cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 370 IRFEDCTGPDTVIKYMTDGMLLREIL-------IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 370 ~~~~~~~~~~~~I~~~T~g~Ll~~l~-------~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
.+...........|--.|+.... +......+++|||||+- |++...+..+++.+ .++.|+|++-=
T Consensus 229 ---~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~al---~~~~rlIlvGD 300 (615)
T PRK10875 229 ---TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDAL---PPHARVIFLGD 300 (615)
T ss_pred ---chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHhc---ccCCEEEEecc
Confidence 00000000001122222222110 11123457999999999 88887776666643 46778887753
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00087 Score=63.12 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=29.5
Q ss_pred HHHHHHHc--CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchH
Q 003721 297 ELIQAVHD--NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRR 344 (800)
Q Consensus 297 ~~i~~i~~--~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r 344 (800)
++...+.. ++.+++.||+|+|||+.+-. +.......+..++++....
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~-i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARA-IANELFRPGAPFLYLNASD 57 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHH-HHHHhhcCCCCeEEEehhh
Confidence 34444544 67899999999999976644 4433333344566555443
No 188
>PRK14974 cell division protein FtsY; Provisional
Probab=97.63 E-value=0.00058 Score=74.72 Aligned_cols=124 Identities=23% Similarity=0.292 Sum_probs=73.8
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec--chHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceE
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ--PRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 382 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~--P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I 382 (800)
...++++|++|+||||.+....... ...+.+++++. +.|..+.++.+.++..+|.++.. + ....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l-~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~---- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL-KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA---- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC----
Confidence 3578999999999999876655432 33445665543 45777777777777777754421 0 0000
Q ss_pred EEechH-HHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHH-hcCCCceEEEeccCCChH
Q 003721 383 KYMTDG-MLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLV-KRRPDLRLIVTSATLDAE 447 (800)
Q Consensus 383 ~~~T~g-~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~-~~~~~~kiI~lSATl~~~ 447 (800)
.+. .+.+.+. ......+++|+||.++ |.....-+..-++.+. ...|+..+++++||...+
T Consensus 206 ---dp~~v~~~ai~-~~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 206 ---DPAAVAYDAIE-HAKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ---CHHHHHHHHHH-HHHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 111 1111111 1123568899999999 5543333333344443 346888899999998644
No 189
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.60 E-value=0.009 Score=74.38 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=84.6
Q ss_pred cCCchHHHHHHHHHHH-cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCccccee
Q 003721 288 SLPIFKLKNELIQAVH-DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEV 366 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~-~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~v 366 (800)
...+.+-|.+++..+. .++.++|+|+.|+||||.+-. +.+.+...+.+|+.+.|+--+|..+. +..|...
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~a---- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEAAGYRVVGGALAGKAAEGLE----KEAGIQS---- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEEcCcHHHHHHHH----HhhCCCe----
Confidence 4678899999999874 578899999999999988743 44544445678999999987775543 3333221
Q ss_pred eeeeecccccCCCceEEEechHHH-HHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 367 GYAIRFEDCTGPDTVIKYMTDGML-LREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 367 g~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
.|-..+ ++.-.....+..-++|||||+. |+++..+..+++.+.. .+.++|++-=+
T Consensus 450 ------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 450 ------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred ------------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 111121 1111112346677899999999 8998888887776643 35677766533
No 190
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.001 Score=74.04 Aligned_cols=324 Identities=19% Similarity=0.156 Sum_probs=176.5
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCeEEEEccC-CCch--HHHHHHHHHHhhccC---------------------------
Q 003721 284 EQRRSLPIFKLKNELIQAVHDNQVLILIGET-GSGK--TTQLAQYLAEAGYTT--------------------------- 333 (800)
Q Consensus 284 ~~r~~lPi~~~Q~~~i~~i~~~~~viv~apT-GSGK--T~~~~~~lle~~~~~--------------------------- 333 (800)
.++.+.|+.+.|.+++....+-++++..-.| +.|+ +..+.+-++++.+..
T Consensus 210 ~~K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQ 289 (698)
T KOG2340|consen 210 DQKKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQ 289 (698)
T ss_pred cccccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhc
Confidence 3567899999999999999999988763332 4455 233444444432211
Q ss_pred ---CCeEEEecchHHHHHHHHHHHHHH-hCCcccce-ee--------eeeeccc-----------------ccC------
Q 003721 334 ---KGKIGCTQPRRVAATSVAKRVAEE-FGCRLGEE-VG--------YAIRFED-----------------CTG------ 377 (800)
Q Consensus 334 ---~~~il~~~P~r~la~qva~rv~~~-~g~~~g~~-vg--------~~~~~~~-----------------~~~------ 377 (800)
..+|++++|+|+.|..+...+... .|..-|.. |. |+...+. .+.
T Consensus 290 G~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriG 369 (698)
T KOG2340|consen 290 GFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIG 369 (698)
T ss_pred CCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhh
Confidence 348999999999999998887766 34322111 10 1110000 000
Q ss_pred --------------CCceEEEechHHHHHHHhc--C-----CCCCCCceEEEeccCcCC-CCcchHHHHHHHHHhcCCC-
Q 003721 378 --------------PDTVIKYMTDGMLLREILI--D-----ENLSQYSVIMLDEAHERT-INTDVLFGLLKQLVKRRPD- 434 (800)
Q Consensus 378 --------------~~~~I~~~T~g~Ll~~l~~--~-----~~l~~~~~IIiDEaHer~-~~~d~l~~~lk~l~~~~~~- 434 (800)
....|++|+|--|.-.+-+ + ..|+.+.++|||-||... -+...++.++..+.....+
T Consensus 370 l~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 370 LAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccc
Confidence 2568889998766444431 1 148889999999999311 1112233333333222111
Q ss_pred --------------------ceEEEeccCCChHHHhhhhc----C-------CCccc---CCCCccceeEEeccccc---
Q 003721 435 --------------------LRLIVTSATLDAERFSGYFF----N-------CNIFS---IPGRTFPVDINYSRQEV--- 477 (800)
Q Consensus 435 --------------------~kiI~lSATl~~~~~~~~f~----~-------~~~~~---i~g~~~~v~~~~~~~~~--- 477 (800)
.|++++|+-..+. +...|. + .++.. +..-..|+...+.....
T Consensus 450 h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~-~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPL-FNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred cCCChhheehheeccHHHHHHHHHHHHhhccHH-HHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 2455555544322 222221 1 11110 11111222222221111
Q ss_pred ---hhhH-HHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCC
Q 003721 478 ---TDYL-DSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAP 553 (800)
Q Consensus 478 ---~~~~-~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~ 553 (800)
.|+. .--+..++--........|||+.|+--+--.+...+.+. .+....+|--.+...-.+.-+.|-
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~ 599 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFF 599 (698)
T ss_pred ccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHH
Confidence 1111 111122222222223456999999998887777766654 222222222222333334445577
Q ss_pred CCCceEEEeccchh--hcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC-----CCeEEEc
Q 003721 554 PGGRKVVVATNIAE--ASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG-----PGKCYRL 626 (800)
Q Consensus 554 ~g~~kVLVAT~iae--~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g-----~G~~~~L 626 (800)
.|..+|++-|-=+- +--+|.+|+-||-|++ ...|--..+++.+.+|+.-.| .-.|-.|
T Consensus 600 qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp---------------P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~il 664 (698)
T KOG2340|consen 600 QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP---------------PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRIL 664 (698)
T ss_pred hcCceEEEEehhhhhhhhheecceeeEEEecC---------------CCCcHHHHHHHhhhhhhhccCCccccceEEEEE
Confidence 88999999996543 5678999999997776 222556678888998886555 2368899
Q ss_pred cChHHh
Q 003721 627 YTESAY 632 (800)
Q Consensus 627 ~t~~~~ 632 (800)
|++-+-
T Consensus 665 ytKyD~ 670 (698)
T KOG2340|consen 665 YTKYDR 670 (698)
T ss_pred eechhh
Confidence 997553
No 191
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.54 E-value=0.00021 Score=73.71 Aligned_cols=66 Identities=26% Similarity=0.337 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHcCCe-EEEEccCCCchHHHHHHHHHHhh-------ccCCCeEEEecchHHHHHHHHHHHHH
Q 003721 291 IFKLKNELIQAVHDNQV-LILIGETGSGKTTQLAQYLAEAG-------YTTKGKIGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~-viv~apTGSGKT~~~~~~lle~~-------~~~~~~il~~~P~r~la~qva~rv~~ 356 (800)
+.+.|.+++..+..... .+|.||.|+|||+.+...+.... ...+++|+++.|+..++..+..++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 35679999999998887 99999999999988776666551 45577999999999999999999876
No 192
>PRK04296 thymidine kinase; Provisional
Probab=97.48 E-value=0.00032 Score=70.84 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=60.0
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecch---HHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCce
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPR---RVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~---r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~ 381 (800)
+...+++||+|+||||.+...+.+. ...+.+++++-|. |.....+ ...+|..+ . .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~-~~~g~~v~i~k~~~d~~~~~~~i----~~~lg~~~----------~-----~-- 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY-EERGMKVLVFKPAIDDRYGEGKV----VSRIGLSR----------E-----A-- 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH-HHcCCeEEEEeccccccccCCcE----ecCCCCcc----------c-----c--
Confidence 4578999999999999998887765 3346678877552 2211111 11111110 0 0
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
+.+.....+++.+.. .-.++++|||||+| .++.+.+..+++.+.. .+..+++.
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~dvviIDEaq--~l~~~~v~~l~~~l~~--~g~~vi~t 112 (190)
T PRK04296 60 IPVSSDTDIFELIEE--EGEKIDCVLIDEAQ--FLDKEQVVQLAEVLDD--LGIPVICY 112 (190)
T ss_pred eEeCChHHHHHHHHh--hCCCCCEEEEEccc--cCCHHHHHHHHHHHHH--cCCeEEEE
Confidence 112334444444433 34578999999999 4444434455555433 34444443
No 193
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.47 E-value=0.00033 Score=75.50 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCchHHHHHHHH----HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC-----eEEEecchHHHHHHHHHHHH
Q 003721 289 LPIFKLKNELIQ----AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG-----KIGCTQPRRVAATSVAKRVA 355 (800)
Q Consensus 289 lPi~~~Q~~~i~----~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~-----~il~~~P~r~la~qva~rv~ 355 (800)
++.++.|.+++. .+.++..+++.+|||+|||++++.+++......+. ++++..++..+..+....+.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 334788888554 46788999999999999999988887654333333 89999999998777655543
No 194
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.47 E-value=0.00033 Score=75.50 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCchHHHHHHHH----HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC-----eEEEecchHHHHHHHHHHHH
Q 003721 289 LPIFKLKNELIQ----AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG-----KIGCTQPRRVAATSVAKRVA 355 (800)
Q Consensus 289 lPi~~~Q~~~i~----~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~-----~il~~~P~r~la~qva~rv~ 355 (800)
++.++.|.+++. .+.++..+++.+|||+|||++++.+++......+. ++++..++..+..+....+.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 334788888554 46788999999999999999988887654333333 89999999998777655543
No 195
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.42 E-value=0.00062 Score=75.93 Aligned_cols=118 Identities=19% Similarity=0.320 Sum_probs=74.1
Q ss_pred hHHHHHHHHHH------HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHH--HHHHHHHhCCccc
Q 003721 292 FKLKNELIQAV------HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSV--AKRVAEEFGCRLG 363 (800)
Q Consensus 292 ~~~Q~~~i~~i------~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qv--a~rv~~~~g~~~g 363 (800)
.+-|+++++.+ .++..+.|.|+-|+|||+.+-. +.......+..+++++||-.+|..+ ...+-..|+.+++
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhccccceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 34577776666 6788999999999999977643 3333344566899999999999877 3444455554432
Q ss_pred ceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh
Q 003721 364 EEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK 430 (800)
Q Consensus 364 ~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~ 430 (800)
..- ...........+ ...+...++|||||+= ++..+.+..+-+.+..
T Consensus 82 ~~~------------~~~~~~~~~~~~------~~~l~~~~~lIiDEis--m~~~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 82 NNE------------KSQCKISKNSRL------RERLRKADVLIIDEIS--MVSADMLDAIDRRLRD 128 (364)
T ss_pred ccc------------cccccccccchh------hhhhhhheeeeccccc--chhHHHHHHHHHhhhh
Confidence 210 000000000111 1247789999999998 7777766655444443
No 196
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.41 E-value=0.0012 Score=79.90 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=50.6
Q ss_pred ceEEEechHHHHHHHhcCC-CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 380 TVIKYMTDGMLLREILIDE-NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
..|+++|+.+|..-++... .+..++.||||||| |...+....-+++.....+++.-+.+|||.+..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 4588999999887776554 58999999999999 666655555556666666677779999999864
No 197
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.40 E-value=0.00025 Score=83.95 Aligned_cols=110 Identities=20% Similarity=0.123 Sum_probs=77.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCC---CCceEEEeccchhhcCCCC
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPP---GGRKVVVATNIAEASLTID 573 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~---g~~kVLVAT~iae~GIdip 573 (800)
++.+|.|+.-..-...+-.+|.-+ ++.-+-+-|....++|...++.|.. .....|++|-+.+.|+|+-
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~~~---------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQ 796 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQIR---------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQ 796 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHhhh---------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchh
Confidence 567778876555444444444333 5667778899889999887777653 4568899999999999999
Q ss_pred CeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHHhh
Q 003721 574 GIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESAYR 633 (800)
Q Consensus 574 ~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~~~ 633 (800)
..+.||-++- -..+-...|+--||-|.| .-.++++.+-..++
T Consensus 797 tadtviifds------------------dwnp~~d~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 797 TADTVIIFDS------------------DWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred hcceEEEecC------------------CCCchhHHHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 8888884443 234456677777777777 56788888865553
No 198
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.35 E-value=0.0028 Score=67.37 Aligned_cols=139 Identities=18% Similarity=0.114 Sum_probs=86.0
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEe
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYM 385 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~ 385 (800)
.-.++--.||.||--++.-.|++.......+.+++...-.|-....+.+...-+..+-...-......+...-..-|+++
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~GvlF~ 142 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVLFS 142 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCCCccch
Confidence 45666668999999999999999877666678988888888888777765432221110000111111112234458899
Q ss_pred chHHHHHHHhcCC-----------CC--CCCceEEEeccCcCCCCcch-------HHHHHHHHHhcCCCceEEEeccCCC
Q 003721 386 TDGMLLREILIDE-----------NL--SQYSVIMLDEAHERTINTDV-------LFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 386 T~g~Ll~~l~~~~-----------~l--~~~~~IIiDEaHer~~~~d~-------l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
|...|........ |+ ..-.+||+||+|. .-+... .-.....+....|+.+++.+|||--
T Consensus 143 TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~-akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATga 221 (303)
T PF13872_consen 143 TYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK-AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGA 221 (303)
T ss_pred hHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh-cCCCCccCccccHHHHHHHHHHHhCCCCcEEEeccccc
Confidence 9988877643210 11 2236999999995 322211 1122334555568899999999974
No 199
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0024 Score=71.85 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=78.5
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCC---CeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCC
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTK---GKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD 379 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~---~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~ 379 (800)
..++.+.++||||+||||.+...........+ ..++..-..|..+.++...+++.+|+++-. .
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~--v------------ 254 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS--I------------ 254 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec--C------------
Confidence 46788999999999999998766554322222 234455566788888877887777654311 0
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccCCChHHHhh
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSATLDAERFSG 451 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSATl~~~~~~~ 451 (800)
.++.-+...+. .+.++++|+||.+- |......+...++.+... .+.-.++++|||.....+..
T Consensus 255 -----~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 255 -----KDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred -----CCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 11111222111 36788999999986 444434455556665443 24456788999997665444
No 200
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.002 Score=77.06 Aligned_cols=124 Identities=20% Similarity=0.245 Sum_probs=82.1
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCC-CeEEE--ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTK-GKIGC--TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~-~~il~--~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
.++++.++||||+||||.+...........+ .+|.+ .-+.|+.+.++.+.+++.+|+++-
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----------------- 246 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----------------- 246 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-----------------
Confidence 3678999999999999998776655433344 35544 335677787777887777765431
Q ss_pred eEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHH-hcCCCceEEEeccCCChHHHh
Q 003721 381 VIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLV-KRRPDLRLIVTSATLDAERFS 450 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~-~~~~~~kiI~lSATl~~~~~~ 450 (800)
...++..+...+. .+.++++|+||=+- |+....-+...+..+. ...|.-.++++|||...+.+.
T Consensus 247 --~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 --AVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --ccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 1114454444332 35678999999999 6655444556566654 345677899999999766444
No 201
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.33 E-value=0.014 Score=77.80 Aligned_cols=245 Identities=13% Similarity=0.123 Sum_probs=135.0
Q ss_pred cCCchHHHHHHHHHHHcC--CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccce
Q 003721 288 SLPIFKLKNELIQAVHDN--QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEE 365 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~--~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~ 365 (800)
.+++.+-|.+++..+..+ +..+|.|+.|+||||.+- .+.+.+...+..|+.++|+-.+|..+.+. .|..-...
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~~G~~V~~lAPTgrAA~~L~e~----~g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASEQGYEIQIITAGSLSAQELRQK----IPRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHH----hcchhhhH
Confidence 467888899999987764 799999999999998864 44444444577899999998877665543 22211000
Q ss_pred eeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC-
Q 003721 366 VGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL- 444 (800)
Q Consensus 366 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl- 444 (800)
..+ .. ....+ ....|...++ ..+..+...++||||||- ++++..+..+++.... .+.|+|++-=+-
T Consensus 502 ~~~-l~--~l~~~---~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~--~garvVlvGD~~Q 568 (1960)
T TIGR02760 502 ITW-VK--NLFND---DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ--HNSKLILLNDSAQ 568 (1960)
T ss_pred HHH-HH--hhccc---ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh--cCCEEEEEcChhh
Confidence 000 00 00000 0011222222 122345678999999999 8888888888876644 457777765432
Q ss_pred -Ch----HHHhhhh-cCCCcccCCC---CccceeEEeccccchhhHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 003721 445 -DA----ERFSGYF-FNCNIFSIPG---RTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACE 515 (800)
Q Consensus 445 -~~----~~~~~~f-~~~~~~~i~g---~~~~v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVF~~s~~~i~~l~~ 515 (800)
++ .-|...- .+.+...... ..-++ .+......+.........+.+.. ....++|+.++.++...+..
T Consensus 569 L~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~ 644 (1960)
T TIGR02760 569 RQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTP--DRQNSQVLATTHREQQDLTQ 644 (1960)
T ss_pred cCccccchHHHHHHHCCCcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhccc--ccCceEEEcCCcHHHHHHHH
Confidence 11 2222111 1233322211 11122 11111111222233333333322 34468999999999999999
Q ss_pred HHHHHHHhhCCCC-CCeEEEEEc-CCCCHHHHHhhcCcCCCC
Q 003721 516 SLCEKIKALGKDV-PELVVLPVY-SALPSEIQSRIFEPAPPG 555 (800)
Q Consensus 516 ~L~~~l~~~~~~~-~~~~v~~lh-~~l~~~~R~~i~~~f~~g 555 (800)
.++..++..|.-. .+..+..+- ..|+..++... ..|+.|
T Consensus 645 ~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 645 IIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9999886655321 233333333 34666665533 344443
No 202
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.33 E-value=0.0036 Score=66.46 Aligned_cols=125 Identities=21% Similarity=0.335 Sum_probs=71.3
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE--ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCce
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC--TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~--~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~ 381 (800)
.+..+.++|++|+||||.+....... ...+.++.+ +-+.|..+.++.+..++.++.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~------------------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------------------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-------------------
Confidence 45789999999999999876554443 233444443 33556555544444444443221
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcCCC-CcchHHHHHHHHHhcCCCceEEEeccCCChHHH
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHERTI-NTDVLFGLLKQLVKRRPDLRLIVTSATLDAERF 449 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~-~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~ 449 (800)
+...++..+.+.+..-....++++||||.+- |.. +.+.+..+.+.+....|+..++++|||......
T Consensus 134 ~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 134 IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 0011333333332211123578999999998 454 344444444444444677778899999865433
No 203
>PRK06526 transposase; Provisional
Probab=97.32 E-value=0.00057 Score=72.15 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT 340 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~ 340 (800)
-+..+++++++||+|+|||+.+.....+. ...+.+++++
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~v~f~ 132 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFA 132 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHH-HHCCCchhhh
Confidence 35678899999999999998876544443 3445566554
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.24 E-value=0.0011 Score=61.85 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHH
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVA 346 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~l 346 (800)
++.+++.||+|||||+.+...+... ......++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL-GPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc-CCCCCCEEEECCEEcc
Confidence 5689999999999998886655543 2222246666655443
No 205
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.18 E-value=0.0058 Score=66.65 Aligned_cols=125 Identities=22% Similarity=0.285 Sum_probs=73.6
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe--cchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCce
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT--QPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~--~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~ 381 (800)
.++.+.++||+|+||||.+....... ...+++|+++ -+.|..+.+....++...+..+ ... . ...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l-~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~------~~~-~--~~~--- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV------IAQ-K--EGA--- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCeEEEEecCccchhhHHHHHHHHHHcCceE------EEe-C--CCC---
Confidence 35688999999999999887655543 2345566643 3567777666666666665322 000 0 000
Q ss_pred EEEechHH-HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-------cCCCceEEEeccCCChH
Q 003721 382 IKYMTDGM-LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-------RRPDLRLIVTSATLDAE 447 (800)
Q Consensus 382 I~~~T~g~-Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-------~~~~~kiI~lSATl~~~ 447 (800)
.+.. ..+.+ ......++++||||=+. |....+.+..-++.+.. ..|+-.+++++||....
T Consensus 180 ----dpa~~v~~~l-~~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 180 ----DPASVAFDAI-QAAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred ----CHHHHHHHHH-HHHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 0111 11111 11134789999999999 55555544444444432 24666789999998654
No 206
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.15 E-value=0.00074 Score=71.30 Aligned_cols=127 Identities=19% Similarity=0.143 Sum_probs=73.0
Q ss_pred cCCchHHHHHHHHH--HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH---HhCCcc
Q 003721 288 SLPIFKLKNELIQA--VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE---EFGCRL 362 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~--i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~---~~g~~~ 362 (800)
.+-.+++-.|++-. +.+|+ |+...||=|||+++..+.+-..+. |..|-|+.....||..=++.+.. .+|..+
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv 149 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSV 149 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-SS-EEEEESSHHHHHHHHHHHHHHHHHTT--E
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-cCCcEEEeccHHHhhccHHHHHHHHHHhhhcc
Confidence 44444444455554 44555 999999999999887777665443 55676777777888766655544 445554
Q ss_pred cceeeeeeecccccCCCceEEEechHHHHHHHhcCC--------CCCCCceEEEeccCcCCCC
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDE--------NLSQYSVIMLDEAHERTIN 417 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~--------~l~~~~~IIiDEaHer~~~ 417 (800)
|.........+....-...|+|+|...+.--.+.+. ....+.++||||||...++
T Consensus 150 ~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 150 GIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp EEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred ccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 432221111111111235699999986654332221 2578899999999964444
No 207
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.14 E-value=0.0024 Score=65.49 Aligned_cols=128 Identities=18% Similarity=0.220 Sum_probs=81.9
Q ss_pred HHHHhcCCchHHHHHHHHHHHc---CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEE-EecchHHHHHHHHHHHHHHh
Q 003721 283 QEQRRSLPIFKLKNELIQAVHD---NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG-CTQPRRVAATSVAKRVAEEF 358 (800)
Q Consensus 283 ~~~r~~lPi~~~Q~~~i~~i~~---~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il-~~~P~r~la~qva~rv~~~~ 358 (800)
.+....+=|++.|.++...+.+ +.+.+...-+|.|||+++. |++...+.++.+.+ +++| ++|..|....+...+
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADGSRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 3445566677889999988765 4789999999999998875 44444566666655 4555 468888777777766
Q ss_pred CCcccceeeeeeecccccC-----------------CCceEEEechHHHHHHHhc-------------------CCCCCC
Q 003721 359 GCRLGEEVGYAIRFEDCTG-----------------PDTVIKYMTDGMLLREILI-------------------DENLSQ 402 (800)
Q Consensus 359 g~~~g~~vg~~~~~~~~~~-----------------~~~~I~~~T~g~Ll~~l~~-------------------~~~l~~ 402 (800)
|.-++..+ |...|+.... ...-|+++||+.++...+. ..++..
T Consensus 94 g~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~ 172 (229)
T PF12340_consen 94 GGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDE 172 (229)
T ss_pred HHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 54333322 4444443221 2345778999966543211 013445
Q ss_pred CceEEEeccCc
Q 003721 403 YSVIMLDEAHE 413 (800)
Q Consensus 403 ~~~IIiDEaHe 413 (800)
...=|+||+|+
T Consensus 173 ~~rdilDEsDe 183 (229)
T PF12340_consen 173 HSRDILDESDE 183 (229)
T ss_pred cCCeEeECchh
Confidence 56678999984
No 208
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.14 E-value=0.0044 Score=66.17 Aligned_cols=124 Identities=23% Similarity=0.311 Sum_probs=73.1
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe--cchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceE
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT--QPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 382 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~--~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I 382 (800)
.+.++++||+|+||||.+....... ...+.+|+++ -+.|..+.+..+.+++..+..+- . . .. ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l-~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~---~--~--~~--~~---- 137 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL-KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI---K--Q--KE--GA---- 137 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE---e--C--CC--CC----
Confidence 4678889999999999887766543 3445566544 36788777777777777663320 0 0 00 00
Q ss_pred EEechHH-HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-------cCCCceEEEeccCCChH
Q 003721 383 KYMTDGM-LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-------RRPDLRLIVTSATLDAE 447 (800)
Q Consensus 383 ~~~T~g~-Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-------~~~~~kiI~lSATl~~~ 447 (800)
-+.. ..+.+ ......++++||||=+- |......+..-++.+.. ..++-.+++++||...+
T Consensus 138 ---dp~~~~~~~l-~~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~ 205 (272)
T TIGR00064 138 ---DPAAVAFDAI-QKAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN 205 (272)
T ss_pred ---CHHHHHHHHH-HHHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH
Confidence 0111 11111 11123679999999998 44433333333443332 12677899999998654
No 209
>smart00311 PWI PWI, domain in splicing factors.
Probab=97.05 E-value=0.0018 Score=54.65 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=57.9
Q ss_pred hhhhcchhHHHHHHHHHhhCCCchHHHHHHHHHhhhCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003721 9 ELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGADLPNYLVRTLFNVIH 75 (800)
Q Consensus 9 ~l~~l~lvskv~~el~~hlg~~d~~laefii~l~~~s~~~~~F~~~l~~~g~~~~~~~~~~l~~~i~ 75 (800)
++..-.+-.-|...+...||.+|.+|.+||+++++++++.+.....|...|.+=...|+.+||+++.
T Consensus 3 kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~ 69 (74)
T smart00311 3 KLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLI 69 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 3344456677889999999999999999999999999999999999998865547889999999875
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0065 Score=69.45 Aligned_cols=125 Identities=19% Similarity=0.262 Sum_probs=75.6
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCC-eEE--EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKG-KIG--CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~-~il--~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
.++++.++||||+||||.+...........+. +|. ..-+.|..+.+..+.+++.+|..+.. ..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~----------~~---- 320 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA----------VK---- 320 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------cC----
Confidence 46789999999999999988776554334333 443 34566888888888888887743210 00
Q ss_pred eEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccCCChHHHhh
Q 003721 381 VIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSATLDAERFSG 451 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSATl~~~~~~~ 451 (800)
+..-+...+ ..+.++++++||.+- |+.....+...+..+.... |.-.+++++||.....+.+
T Consensus 321 -----~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~ 383 (484)
T PRK06995 321 -----DAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE 383 (484)
T ss_pred -----CchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH
Confidence 001111111 246678999999987 4433333333333333221 3347899999997664443
No 211
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.97 E-value=0.0013 Score=75.05 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~ 356 (800)
+..-|..++.+++++...+|.||+|+|||....-.+++......+.|+|++|..+++.++|..+-+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 678899999999999999999999999998877777766666788999999999999999998743
No 212
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.97 E-value=0.002 Score=76.82 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHcC-CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH
Q 003721 290 PIFKLKNELIQAVHDN-QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~-~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~ 356 (800)
++.+.|.+++..+..+ ..++|.||+|+|||+.+...+... ...+.+|+++.|+..++.++..++.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~-~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL-VKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4567899999887766 789999999999999887666654 44566999999999999999999876
No 213
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.96 E-value=0.002 Score=69.72 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
.+-|.+++.. .++.++|.|..|||||+++..-+...... ...+|+|+.+|+.+|.++..|+...++
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 3457888877 67889999999999999987655544332 234899999999999999999987653
No 214
>PRK10867 signal recognition particle protein; Provisional
Probab=96.94 E-value=0.0084 Score=67.90 Aligned_cols=123 Identities=24% Similarity=0.289 Sum_probs=72.5
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEE--EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG--CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il--~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
..++++|++||||||.+..++.......+.+++ ..-+.|..|..+.+.+++..|.++-. .. ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~-----~~----~~------ 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP-----SG----DG------ 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe-----cC----CC------
Confidence 478899999999999887766543222144443 45678888887777777776644311 00 00
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCCceEEEeccCCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLD 445 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI~lSATl~ 445 (800)
..|..+............+++||||=+- |....+.+...+..+.. ..|+--+++++||..
T Consensus 166 -~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 166 -QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 1233333322222234579999999998 44433333344444333 346666788888763
No 215
>PRK08181 transposase; Validated
Probab=96.94 E-value=0.011 Score=63.00 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=30.7
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHH
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSV 350 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qv 350 (800)
.+..+++++++||+|+|||..+..+..+. ...+..++|+. ...+..++
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLAL-IENGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHH-HHcCCceeeee-HHHHHHHH
Confidence 35578899999999999997765444333 34455666543 33344433
No 216
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.86 E-value=0.0086 Score=67.77 Aligned_cols=123 Identities=22% Similarity=0.230 Sum_probs=71.5
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEE--EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG--CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il--~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
..++++|++||||||.+...+.......+.+++ -+-++|..|.++.+++++..+.++-. . ...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~-----~-----~~~----- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA-----L-----GKG----- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe-----c-----CCC-----
Confidence 478899999999999987776653222344443 45567888887777777766644211 0 000
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCCceEEEeccCCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLD 445 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI~lSATl~ 445 (800)
..|..+............+++||+|=+- |....+.+...+..+.. ..|+-.+++++||..
T Consensus 165 -~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 165 -QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 0122222222111223578999999998 55433444444444433 346666778888753
No 217
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.83 E-value=0.066 Score=63.77 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=76.0
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecchHHHHHHHHHHHHHHh---CCcccceeeeeeec--ccccCCC
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQPRRVAATSVAKRVAEEF---GCRLGEEVGYAIRF--EDCTGPD 379 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P~r~la~qva~rv~~~~---g~~~g~~vg~~~~~--~~~~~~~ 379 (800)
+.+++.|.-|=|||.++-+.+....... ...|+++.|+.+.+..+.....+-+ |.+.+ |.+.... .......
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~--v~~d~~g~~~~~~~~~ 309 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRK--VAPDALGEIREVSGDG 309 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccc--cccccccceeeecCCc
Confidence 3899999999999988775553332222 4599999999999988877654433 32211 1111100 1112244
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
..|.|.+|.... ..-+++|||||= .+...++..++.. .+.++||.|+.
T Consensus 310 ~~i~y~~P~~a~---------~~~DllvVDEAA--aIplplL~~l~~~-------~~rv~~sTTIh 357 (758)
T COG1444 310 FRIEYVPPDDAQ---------EEADLLVVDEAA--AIPLPLLHKLLRR-------FPRVLFSTTIH 357 (758)
T ss_pred eeEEeeCcchhc---------ccCCEEEEehhh--cCChHHHHHHHhh-------cCceEEEeeec
Confidence 557788776542 127899999998 6666555444433 24589999995
No 218
>PF13173 AAA_14: AAA domain
Probab=96.79 E-value=0.0079 Score=56.46 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=22.1
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHh
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEA 329 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~ 329 (800)
+++.++|.||.|+||||.+-+.+.+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999998877655
No 219
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.78 E-value=0.0065 Score=73.14 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCc--eEEEeccchhhcCCCC
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGR--KVVVATNIAEASLTID 573 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~--kVLVAT~iae~GIdip 573 (800)
.+.++|||..-.+..+.+-..|.-+ ++.-+-+.|....++|+...+.|....+ ..|++|-..+.|||+-
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLt 1345 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLT 1345 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccc
Confidence 4678999977666665555555443 6777888999999999999999987654 7789999999999999
Q ss_pred CeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhCC
Q 003721 574 GIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMS 637 (800)
Q Consensus 574 ~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~~ 637 (800)
+.+.|| +||..-+ |.--+++.-|+-|.|++..=+.|||.++...+..++
T Consensus 1346 gADTVv--------FYDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1346 GADTVV--------FYDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred cCceEE--------EecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 999999 4444433 555678888999999999999999999877655443
No 220
>PRK08727 hypothetical protein; Validated
Probab=96.77 E-value=0.0069 Score=63.24 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=23.4
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
+.+++.||+|+|||..+..+.. .....+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~-~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA-AAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH-HHHHcCCcEEEEe
Confidence 4699999999999977654333 3334445666653
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.73 E-value=0.026 Score=59.22 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=60.8
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEe
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYM 385 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~ 385 (800)
..+++.|++|+|||+.+...+.+ ....+..++++ +...+. .++...+.. .+ .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~-l~~~g~~v~~i-t~~~l~----~~l~~~~~~-----------------~~-----~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE-LLLRGKSVLII-TVADIM----SAMKDTFSN-----------------SE-----T 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHhcCCeEEEE-EHHHHH----HHHHHHHhh-----------------cc-----c
Confidence 57999999999999877544443 34445566665 322222 223222210 00 1
Q ss_pred chHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-C-CceEEEeccCCChHHHhhhh
Q 003721 386 TDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-P-DLRLIVTSATLDAERFSGYF 453 (800)
Q Consensus 386 T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~-~~kiI~lSATl~~~~~~~~f 453 (800)
+...+++. +.+++++||||++.-. .+++-..++-.+...| . ..++|++| -++.+.+...+
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitS-Nl~~~~l~~~~ 213 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLT-NSNMEEMTKLL 213 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeC-CCCHHHHHHHh
Confidence 22223332 4689999999999533 4555545555554433 2 34455544 45555555544
No 222
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.70 E-value=0.00066 Score=67.14 Aligned_cols=117 Identities=25% Similarity=0.301 Sum_probs=56.0
Q ss_pred EEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeec-------ccccCCCce
Q 003721 309 ILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRF-------EDCTGPDTV 381 (800)
Q Consensus 309 iv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~-------~~~~~~~~~ 381 (800)
|++|+-|-|||+++-+.+.........+|++++|+...+..+.+.+...+. ..||.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 588999999999887766554333334899999999998888766544331 11221100 001123556
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
|.|..|..+... -...+++|||||= ++...+ ++.+... .+.+++|.|+.
T Consensus 76 i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p~----L~~ll~~---~~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAE------KPQADLLIVDEAA--AIPLPL----LKQLLRR---FPRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGG--GS-HHH----HHHHHCC---SSEEEEEEEBS
T ss_pred EEEECCHHHHhC------cCCCCEEEEechh--cCCHHH----HHHHHhh---CCEEEEEeecc
Confidence 778877766331 2346999999998 555544 4444433 23577788875
No 223
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.67 E-value=0.023 Score=66.48 Aligned_cols=143 Identities=17% Similarity=0.129 Sum_probs=88.4
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhC---C-----ccccee---e--ee
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFG---C-----RLGEEV---G--YA 369 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g---~-----~~g~~v---g--~~ 369 (800)
...+-.++.+|=|.|||+.+...+.......+.+|++++|...-+.++.+++...+. . ..+..+ | -.
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~ 264 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDEN 264 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeE
Confidence 345678889999999999887665544332466999999999999998888766553 0 011101 0 00
Q ss_pred eecccccC---CCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 370 IRFEDCTG---PDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 370 ~~~~~~~~---~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
+.+..-.. ..+.|.|++.+ .+...-..++++|+|||+ .+..+.+..++--+.. .+.++|++|-+-+.
T Consensus 265 I~f~~p~gak~G~sti~F~Ars------~~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~IiISS~~~~ 334 (752)
T PHA03333 265 LEYISDPAAKEGKTTAHFLASS------PNAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQIHISSPVDA 334 (752)
T ss_pred EEEecCcccccCcceeEEeccc------CCCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceEEEeCCCCc
Confidence 11110000 11334443222 011112357999999999 6666777776665554 36788999998887
Q ss_pred HHHhhhhcC
Q 003721 447 ERFSGYFFN 455 (800)
Q Consensus 447 ~~~~~~f~~ 455 (800)
..+..++.+
T Consensus 335 ~s~tS~L~n 343 (752)
T PHA03333 335 DSWISRVGE 343 (752)
T ss_pred chHHHHhhh
Confidence 777776655
No 224
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.65 E-value=0.012 Score=66.34 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=70.6
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE--ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC--TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~--~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
..++++|++|+||||.+....... ...+.+|++ +-|.|..|.++.+.+++..+.++-. .. ...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l-~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~-----~~----~~~----- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY-QRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG-----SY----TES----- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe-----ec----CCC-----
Confidence 478899999999999887665533 233445443 4467888887777776665543210 00 000
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHH-hcCCCceEEEeccCCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLV-KRRPDLRLIVTSATLD 445 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~-~~~~~~kiI~lSATl~ 445 (800)
.|-.+.........-..+++||||=+. |....+-+..-+..+. ...|+..+++++||..
T Consensus 166 --dp~~i~~~~l~~~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 166 --DPVKIASEGVEKFKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred --CHHHHHHHHHHHHHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 111111111100112579999999998 5444333444444443 3457778899999875
No 225
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.65 E-value=0.0073 Score=64.93 Aligned_cols=86 Identities=28% Similarity=0.335 Sum_probs=53.8
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCC-CeEE--EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTK-GKIG--CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~-~~il--~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
.+++++++||||+||||.+...+.......+ .+|. -+-|.|..+.+....+++.+++++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~---------------- 256 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV---------------- 256 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec----------------
Confidence 4568999999999999998776665533322 3443 35566777777777777666644310
Q ss_pred eEEEechHHHHHHHhcCCCCCCCceEEEecc
Q 003721 381 VIKYMTDGMLLREILIDENLSQYSVIMLDEA 411 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEa 411 (800)
..++.-+...+. .+.++++|+||.+
T Consensus 257 ---~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 257 ---ARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred ---cCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 112333333322 2356899999976
No 226
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.65 E-value=0.0065 Score=64.58 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=30.1
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
...++++||+|+||||.+-..+.+. ......+..+.+...-..+....+...+|.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l-~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~ 97 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL-DQERVVAAKLVNTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc-CCCCeEEeeeeCCCCCHHHHHHHHHHHcCC
Confidence 3479999999999998886554432 211212223333222233444555555543
No 227
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.018 Score=61.86 Aligned_cols=124 Identities=22% Similarity=0.252 Sum_probs=80.7
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec--chHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ--PRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~--P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
.+++++|-.|+||||.+....... ...+.+|++.+ ..|+.|.++.+.+++..|+.+-. .. ..+...-+.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l-~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~-~G~DpAaVa 210 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYL-KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK-EGADPAAVA 210 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHH-HHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC-CCCCcHHHH
Confidence 378899999999999987765543 44566666544 67999999999999988876522 11 111111122
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCc------eEEEeccCCChH
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDL------RLIVTSATLDAE 447 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~------kiI~lSATl~~~ 447 (800)
| +- .....-+++++|++|-|- |+.+..-|+.-|+++.+. .++. .++++=||....
T Consensus 211 f-------DA-i~~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 211 F-------DA-IQAAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred H-------HH-HHHHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 2 11 111235789999999999 777766666666666543 3333 456668998644
No 228
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.60 E-value=0.018 Score=59.75 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=24.5
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
.++.++++||+|+|||+.+-.+..+ ....+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~-~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD-ASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-HHhCCCcEEEEe
Confidence 4568999999999999877544433 233444555543
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.018 Score=68.43 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=30.1
Q ss_pred hcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 395 LIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 395 ~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
...+.-.+++++||||+| ++.......++|.+..-.++.++|+.|
T Consensus 112 ~~~P~~gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 112 VYAPVDARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HhccccCCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 333445679999999999 566666667777665544456555544
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=96.53 E-value=0.012 Score=61.16 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=23.3
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT 340 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~ 340 (800)
.+..+++.||+|+|||..+.....+. ...+.++.|+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~y~ 73 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY-LLNQRTAIYI 73 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEe
Confidence 34568999999999997765444332 3334455554
No 231
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.48 E-value=0.023 Score=64.56 Aligned_cols=120 Identities=28% Similarity=0.315 Sum_probs=68.6
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE--ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceE
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC--TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 382 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~--~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I 382 (800)
..+++++|++|+||||.+....... ...+.++++ +-+.|..+.++.+.+++..+.++- + .. ..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L-~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~---~--~~----~~----- 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYF-KKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY---G--DP----DN----- 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE---e--cC----Cc-----
Confidence 3578899999999999987665433 333445443 445677777777777777654421 0 00 00
Q ss_pred EEechH-HHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHH-hcCCCceEEEeccCCC
Q 003721 383 KYMTDG-MLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLV-KRRPDLRLIVTSATLD 445 (800)
Q Consensus 383 ~~~T~g-~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~-~~~~~~kiI~lSATl~ 445 (800)
..+. .+.+.+.. +..+++||||.+- |....+-+..-++.+. ...|+..+++++||..
T Consensus 160 --~d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 160 --KDAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred --cCHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 0111 12222211 2335999999997 3333333333333333 3357778888998874
No 232
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.011 Score=67.34 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 398 ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 398 ~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
+.-.++.++|||||| ++..+....+++.+-. |...+++.-||-.
T Consensus 117 p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEE--Pp~~viFILaTte 160 (484)
T PRK14956 117 PMGGKYKVYIIDEVH--MLTDQSFNALLKTLEE--PPAHIVFILATTE 160 (484)
T ss_pred hhcCCCEEEEEechh--hcCHHHHHHHHHHhhc--CCCceEEEeecCC
Confidence 345678999999999 6777777777777744 3334444444433
No 233
>PF05729 NACHT: NACHT domain
Probab=96.46 E-value=0.013 Score=56.77 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=33.3
Q ss_pred eEEEeccCcCCCCcc-----hHHHHHHHHHhc--CCCceEEEeccCCChHHHhhhhcCC
Q 003721 405 VIMLDEAHERTINTD-----VLFGLLKQLVKR--RPDLRLIVTSATLDAERFSGYFFNC 456 (800)
Q Consensus 405 ~IIiDEaHer~~~~d-----~l~~~lk~l~~~--~~~~kiI~lSATl~~~~~~~~f~~~ 456 (800)
++|||=++|...... .....+..+... .++.++++.|.+-....+...+...
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~ 142 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA 142 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC
Confidence 489998887544332 244555555544 6789988888776665555555444
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.45 E-value=0.019 Score=62.86 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=28.8
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHH
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATS 349 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~q 349 (800)
.+..+++.||||+|||..+. .+.......+..|+|+. ...+...
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~g~~V~y~t-~~~l~~~ 225 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDRGKSVIYRT-ADELIEI 225 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHCCCeEEEEE-HHHHHHH
Confidence 45889999999999998664 44444455555666643 3334433
No 235
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.42 E-value=0.037 Score=60.81 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=23.5
Q ss_pred HHHHHHHHcCC--eEEEEccCCCchHHHHHHHHHH
Q 003721 296 NELIQAVHDNQ--VLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 296 ~~~i~~i~~~~--~viv~apTGSGKT~~~~~~lle 328 (800)
.++...+..++ .+++.||+|+|||+.+-.+.-+
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444455555 7999999999999888655443
No 236
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.36 E-value=0.0017 Score=64.12 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEecc--chhhcCCCC
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATN--IAEASLTID 573 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~--iae~GIdip 573 (800)
.+|.+|||+||.+..+.+...+...... .++.+.. . ....+..+++.|+.+.-.||+|+. .+..|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 4689999999999999888877543100 0122222 2 245677888889999999999998 999999999
Q ss_pred C--eeEEEeCCCccceeecCCCC----------c--ccccccccCHHhHHHHhcccCCCCCCeEE
Q 003721 574 G--IFYVIDPGFAKQNVYNPKQR----------L--DSLVITPISQASALQRAGRAGRTGPGKCY 624 (800)
Q Consensus 574 ~--v~~VId~g~~k~~~yd~~~~----------~--~~l~~~p~S~~~~~QR~GRaGR~g~G~~~ 624 (800)
+ ++.||-.|+......||... . ......|.......|-+||+=|.....+.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 6 77888777744333333210 0 01123355566788999999999854443
No 237
>PHA02533 17 large terminase protein; Provisional
Probab=96.34 E-value=0.11 Score=60.78 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=91.2
Q ss_pred hcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHH-HhhccCCCeEEEecchHHHHHHHHHHHHHHhCC-cccc
Q 003721 287 RSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA-EAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC-RLGE 364 (800)
Q Consensus 287 ~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~ll-e~~~~~~~~il~~~P~r~la~qva~rv~~~~g~-~~g~ 364 (800)
.++++.++|..++..+..++..++..+=..|||+.+..+++ ......+..+++++|++.-|..+.+++...+.. +--.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 46889999999999887788888999999999999875554 343455669999999999999988877643321 0000
Q ss_pred eeeee--eecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 365 EVGYA--IRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 365 ~vg~~--~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
..+.. .+..-....+..|.+.|..- + ...=.+++++|+||+|...-..+++..+...+ ......++++.|.
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~~--~----t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~l-asg~~~r~iiiST 208 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASSP--D----AVRGNSFAMIYIDECAFIPNFIDFWLAIQPVI-SSGRSSKIIITST 208 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCCC--C----ccCCCCCceEEEeccccCCCHHHHHHHHHHHH-HcCCCceEEEEEC
Confidence 00100 00000012344554444221 0 00123467899999994221123333332222 3223345666665
Q ss_pred CCChHHHhhhh
Q 003721 443 TLDAERFSGYF 453 (800)
Q Consensus 443 Tl~~~~~~~~f 453 (800)
+.....|...|
T Consensus 209 p~G~n~fye~~ 219 (534)
T PHA02533 209 PNGLNHFYDIW 219 (534)
T ss_pred CCchhhHHHHH
Confidence 54333355444
No 238
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.023 Score=68.84 Aligned_cols=41 Identities=20% Similarity=0.441 Sum_probs=29.6
Q ss_pred CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 398 ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 398 ~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
+.-.++.++|||||| ++..+....+++.+-.-.+.+++|+.
T Consensus 115 P~~gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 115 PSRGRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhcCCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 344678999999999 66777777777777654455666664
No 239
>PRK05642 DNA replication initiation factor; Validated
Probab=96.32 E-value=0.024 Score=59.17 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=23.3
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
..++++||+|+|||..+. .+.......+.+++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHhCCCcEEEee
Confidence 568999999999997753 33433333445666654
No 240
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.31 E-value=0.028 Score=58.03 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=24.1
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT 340 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~ 340 (800)
.+..+++.||+|+|||+.+-.+..+. ...+..++++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~-~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA-EERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HhcCCcEEEE
Confidence 45689999999999998875544433 3333344443
No 241
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.31 E-value=0.045 Score=54.08 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=62.0
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe--cchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEE
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT--QPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKY 384 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~--~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~ 384 (800)
.++++|++|+|||+.+....... ...+.+++++ -++|.-.......+.+..+..+- ....+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~-~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~----------~~~~~------ 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL-KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF----------EEGEG------ 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE----------ecCCC------
Confidence 57899999999999976655443 2334556543 35655444444443333332110 00000
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCCceEEEeccCCC
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLD 445 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI~lSATl~ 445 (800)
..+..++...........+++||+|..+....+.+.+ ..+..+.. ..++-.+++++|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l-~~l~~l~~~~~~~~~~lVv~~~~~ 125 (173)
T cd03115 65 KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLM-EELKKIKRVVKPDEVLLVVDAMTG 125 (173)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHH-HHHHHHHhhcCCCeEEEEEECCCC
Confidence 0122222221111223578999999999333333333 33333333 246667777887644
No 242
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.023 Score=65.35 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=32.3
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
......+...++.++||||+| ++.......+++.+..-.+...+|+.+
T Consensus 106 e~~~~~P~~~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHhccccCCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 333445667899999999999 666666666677666544555555544
No 243
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.27 E-value=0.025 Score=59.07 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
+..+++.||+|+|||+.+..+..+. ...+.++.|+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL-SQRGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEE
Confidence 4689999999999998775444433 33345566543
No 244
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.25 E-value=0.013 Score=69.44 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=31.3
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
..+...+...++.++|||||| ++.......+||.+-.-.+..++|+.
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHhhhhcCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 333334455789999999999 66666777777766554445555554
No 245
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.036 Score=64.48 Aligned_cols=43 Identities=21% Similarity=0.436 Sum_probs=30.1
Q ss_pred CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 397 DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 397 ~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.+.-.++.++|||||| ++..+....+++.+..-.+...+|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 4455789999999999 666666667777665544556666544
No 246
>PRK08116 hypothetical protein; Validated
Probab=96.22 E-value=0.05 Score=58.03 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
+.-+++.|++|+|||..+.. +.......+..++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~a-ia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAAC-IANELIEKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHcCCeEEEEE
Confidence 34599999999999977754 4444344455666553
No 247
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.22 E-value=0.026 Score=59.99 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.7
Q ss_pred CeEEEEccCCCchHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~ 325 (800)
.++++.||+|+|||+.+-.+
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47899999999999887443
No 248
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.023 Score=63.37 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=28.4
Q ss_pred hcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 395 LIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 395 ~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
...+....+.++||||+| .+.......+++.+....+..++|+.|
T Consensus 112 ~~~p~~~~~kviIIDEa~--~l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 112 YYSPSKSRFKVYLIDEVH--MLSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred hcCcccCCceEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 334456778999999999 444444555666665544455555543
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=96.18 E-value=0.037 Score=58.67 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
+..+.++++.||+|+|||+.+....... ...+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a-~~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEA-VRAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEe
Confidence 5678899999999999998876654433 33455676653
No 250
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.03 Score=65.67 Aligned_cols=45 Identities=20% Similarity=0.435 Sum_probs=31.3
Q ss_pred cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 396 IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 396 ~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
..+...++.++||||+| +++......+||.+-.-.+++++|+.|-
T Consensus 118 ~~P~~gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 118 YAPTAGRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred hchhcCCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 34456789999999999 6666667777776655445566666553
No 251
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.07 E-value=0.028 Score=66.53 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=30.2
Q ss_pred CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 397 DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 397 ~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.+...++.+|||||+| .+.......+++.+....+...+|+.|
T Consensus 114 ~P~~gk~KVIIIDEad--~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECcc--ccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3456789999999999 555555666677766555566666655
No 252
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.06 E-value=0.02 Score=57.11 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=34.8
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
.++|.||+|+|||+.+.+++.+.. ..+.+++++.. .+...++.+++ ..+|..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~-e~~~~~~~~~~-~~~g~~ 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTL-EESPEELIENA-ESLGWD 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEEC-CCCHHHHHHHH-HHcCCC
Confidence 378999999999999988888764 45667777643 33444554443 333443
No 253
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.06 E-value=0.011 Score=59.00 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=55.2
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCce
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~ 381 (800)
+.+++++++.||||+|||..+...+.+. ...+..++++ +...|...+.. ... ..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v~f~-~~~~L~~~l~~----~~~-----------------~~--- 97 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEA-IRKGYSVLFI-TASDLLDELKQ----SRS-----------------DG--- 97 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEE-EHHHHHHHHHC----CHC-----------------CT---
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcceeEe-ecCceeccccc----ccc-----------------cc---
Confidence 5678899999999999998876554443 4455566664 44444443321 000 00
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcc---hHHHHHHHHHhcCCCceEEEeccCCChHHHhhhhcC
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTD---VLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFN 455 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f~~ 455 (800)
+...+++. +.+++++||||.--...... .++.++..-. .+.++|++| -++...+.+.+++
T Consensus 98 ----~~~~~~~~------l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~---~~~~tIiTS-N~~~~~l~~~~~d 160 (178)
T PF01695_consen 98 ----SYEELLKR------LKRVDLLILDDLGYEPLSEWEAELLFEIIDERY---ERKPTIITS-NLSPSELEEVLGD 160 (178)
T ss_dssp ----THCHHHHH------HHTSSCEEEETCTSS---HHHHHCTHHHHHHHH---HT-EEEEEE-SS-HHHHHT----
T ss_pred ----chhhhcCc------cccccEecccccceeeecccccccchhhhhHhh---cccCeEeeC-CCchhhHhhcccc
Confidence 01112222 35789999999873222222 2333333322 223556544 4677777777764
No 254
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.054 Score=62.76 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=29.2
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
......+...++.++||||+| .+.......+++.+....+...+|+
T Consensus 118 e~a~~~P~~~~~KVvIIDEa~--~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 118 ESAEYKPLQGKHKIFIIDEVH--MLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred HHHHhccccCCcEEEEEEChh--hcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 334445677899999999999 5555555666666554333343333
No 255
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.034 Score=61.00 Aligned_cols=135 Identities=20% Similarity=0.264 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHcCC----eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHH-HH--HHHHHHHHHhCCcc
Q 003721 290 PIFKLKNELIQAVHDNQ----VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVA-AT--SVAKRVAEEFGCRL 362 (800)
Q Consensus 290 Pi~~~Q~~~i~~i~~~~----~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~l-a~--qva~rv~~~~g~~~ 362 (800)
++||+|...+..+...+ -.+++||.|.|||+.+..+.... +.. .|...- +. .-.+.+.. |...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l-lC~-------~~~~~~~Cg~C~sC~~~~~--g~HP 72 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL-LCE-------APQGGGACGSCKGCQLLRA--GSHP 72 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH-cCC-------CCCCCCCCCCCHHHHHHhc--CCCC
Confidence 56888888888865433 58899999999998875544332 221 111000 00 00011100 0000
Q ss_pred cceeeeeeecccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
. + +.+..+ .....|.+-.--.+...+...+....+.++|||||| .++......++|.+-.-.++..+|++|.
T Consensus 73 D--~-~~i~~~---~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 73 D--N-FVLEPE---EADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred C--E-EEEecc---CCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 0 0 000000 000112221122333444445667889999999999 5666677777776655334454554443
No 256
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.056 Score=59.88 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=31.6
Q ss_pred HHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 393 EILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 393 ~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.+...+....+.+||||||| .++......+++.+..-.++..+|++|
T Consensus 132 ~l~~~~~~g~~rVviIDeAd--~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 132 FLSQTSGDGNWRIVIIDPAD--DMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred HhhhccccCCceEEEEEchh--hcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 33334456789999999999 556666677777776544455556655
No 257
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.94 E-value=0.021 Score=67.39 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEE
Q 003721 555 GGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYR 625 (800)
Q Consensus 555 g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~ 625 (800)
..++.|++-.++-.|-|=|+|-.+.- .. ...|..+=.|.+||.-|-. .|.-++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck-----L~-------------~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK-----LR-------------SSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE-----ec-------------CCCcchHHHHHhccceeeeeccccceec
Confidence 45899999999999999999977751 11 1456778899999999977 676555
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.91 E-value=0.031 Score=53.81 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=26.3
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccCCCeEEEecch
Q 003721 308 LILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPR 343 (800)
Q Consensus 308 viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~ 343 (800)
++|.|++|+|||+.+...+.... ..++.++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-hcCCEEEEEECC
Confidence 68999999999998877766553 356677776554
No 259
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.87 E-value=0.028 Score=60.71 Aligned_cols=57 Identities=23% Similarity=0.174 Sum_probs=43.4
Q ss_pred cCCchHHHHHHHHHHHcCC--eEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchH
Q 003721 288 SLPIFKLKNELIQAVHDNQ--VLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRR 344 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~~--~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r 344 (800)
-.|....|.-++++++... -|.+.|+.|||||..++.+.++..+.. -.+++++-|+.
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc
Confidence 3566778999999988765 678899999999988777777665543 33788877763
No 260
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.84 E-value=0.069 Score=68.88 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=76.8
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEccCCCchHHHHHHHH--HHhhc-cCCCeEEEecchHHHHHHHHHHHHHHhCCccc
Q 003721 289 LPIFKLKNELIQAVHD--NQVLILIGETGSGKTTQLAQYL--AEAGY-TTKGKIGCTQPRRVAATSVAKRVAEEFGCRLG 363 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~--~~~viv~apTGSGKT~~~~~~l--le~~~-~~~~~il~~~P~r~la~qva~rv~~~~g~~~g 363 (800)
..+.+-|.+++..+.. ++.++|.|..|+||||.+-..+ +.... ..+..|+.++|+--++..+.. .|+..
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~A- 907 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVDA- 907 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCchH-
Confidence 3578899999999874 4899999999999999853322 22211 234578889999888766532 23221
Q ss_pred ceeeeeeecccccCCCceEEEechHHHHHH-----HhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEE
Q 003721 364 EEVGYAIRFEDCTGPDTVIKYMTDGMLLRE-----ILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLI 438 (800)
Q Consensus 364 ~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~-----l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI 438 (800)
.|-..|+.. ...+......++|||||+= |++...+..+++.+.. .+.++|
T Consensus 908 ---------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~~--~garvV 962 (1623)
T PRK14712 908 ---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRAV 962 (1623)
T ss_pred ---------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhh--CCCEEE
Confidence 011111110 0111123456899999998 8887666666665432 346777
Q ss_pred EeccC
Q 003721 439 VTSAT 443 (800)
Q Consensus 439 ~lSAT 443 (800)
++-=+
T Consensus 963 LVGD~ 967 (1623)
T PRK14712 963 ASGDT 967 (1623)
T ss_pred EEcch
Confidence 76544
No 261
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.037 Score=65.15 Aligned_cols=42 Identities=21% Similarity=0.451 Sum_probs=28.1
Q ss_pred CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 398 ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 398 ~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
+...++.++|||||| +++......+++.+....+...+|+.+
T Consensus 114 P~~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 114 PTQGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhcCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 345688999999999 666666666666655544455566544
No 262
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.055 Score=63.16 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
++..+...+...++.++|||||| .+..+....+++.+-.-.+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~--~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVH--MLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechh--hccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 34444444567789999999999 455555566666665433455555544
No 263
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.80 E-value=0.062 Score=62.09 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=90.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCc-eEEEeccchhhcCCCCC
Q 003721 496 PEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGR-KVVVATNIAEASLTIDG 574 (800)
Q Consensus 496 ~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~-kVLVAT~iae~GIdip~ 574 (800)
.+.++|+|..--+.++.+-++|..+ ++.-+-+.|+....+|..+...|....+ -.|++|-+.+.|||+-.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTA 1113 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTA 1113 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccc
Confidence 4678999988777777777777655 7778889999999999999999987544 56889999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCCeEEEccChHHhhhhC
Q 003721 575 IFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEM 636 (800)
Q Consensus 575 v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G~~~~L~t~~~~~~~~ 636 (800)
.+.||- ||..-+ |.--.++.-|+-|-|.+..-.+|+|.+....+..+
T Consensus 1114 ADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~ 1160 (1185)
T KOG0388|consen 1114 ADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 1160 (1185)
T ss_pred cceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHHHH
Confidence 999994 433322 44445666677777777678899999987665443
No 264
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.76 E-value=0.052 Score=72.50 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=78.7
Q ss_pred cCCchHHHHHHHHHHHcC--CeEEEEccCCCchHHHHH---HHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 003721 288 SLPIFKLKNELIQAVHDN--QVLILIGETGSGKTTQLA---QYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRL 362 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~~--~~viv~apTGSGKT~~~~---~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~ 362 (800)
...+.+-|.+++..+..+ +.++|.|..|+||||.+- ..+.+.+-..+..|+.++|+-.+|..+.. .|...
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~a 1091 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQA 1091 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCch
Confidence 346789999999997654 688999999999999873 33444433345688889999888776632 22211
Q ss_pred cceeeeeeecccccCCCceEEEechHHHHHH---HhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGMLLRE---ILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~---l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
.|-..++.. ....+.+...++|||||+= |+++..+..+++.+.. ++.++|+
T Consensus 1092 ----------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~~--~~ak~vl 1145 (1960)
T TIGR02760 1092 ----------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQK--SGSRAVS 1145 (1960)
T ss_pred ----------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhccC--CCCEEEE
Confidence 011111110 0112235567899999998 8888777666665532 3456665
Q ss_pred ec
Q 003721 440 TS 441 (800)
Q Consensus 440 lS 441 (800)
+-
T Consensus 1146 vG 1147 (1960)
T TIGR02760 1146 LG 1147 (1960)
T ss_pred eC
Confidence 54
No 265
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.05 Score=64.02 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=32.7
Q ss_pred HHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 393 EILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 393 ~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.+...+....+.++||||+| ++..+....+++.+-.-.+...+|+.+
T Consensus 109 ~~~~~P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhhhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 33444567889999999999 667777777777766544556566554
No 266
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.75 E-value=0.049 Score=66.64 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=30.5
Q ss_pred cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 396 IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 396 ~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
..+...++.++||||+| .+..+....+++.+........+|+.+
T Consensus 114 ~~p~~~~~KV~IIDEad--~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 114 FAPAESRYKIFIIDEAH--MVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hchhcCCceEEEEechh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34456789999999999 566666666676666544555566554
No 267
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.73 E-value=0.072 Score=61.28 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=23.0
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEec
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQ 341 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~ 341 (800)
+.+++.||+|+|||..+-. +....... +.+++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEEE
Confidence 4689999999999977643 44333333 34566653
No 268
>PRK12377 putative replication protein; Provisional
Probab=95.71 E-value=0.14 Score=53.94 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=27.5
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHH
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSV 350 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qv 350 (800)
...+++.||+|+|||..+.....+. ...+..++|+ +...+...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i-~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVV-TVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEE-EHHHHHHHH
Confidence 4689999999999997775444333 3444455443 444444443
No 269
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.67 E-value=0.029 Score=61.22 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=38.7
Q ss_pred chHHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhc--cCCCeEEEecchHHHH
Q 003721 291 IFKLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGY--TTKGKIGCTQPRRVAA 347 (800)
Q Consensus 291 i~~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~--~~~~~il~~~P~r~la 347 (800)
+.+.|.+.+.. +..+.+++|+|+|||||||.+- .++.... ..+.+++.+....++.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~-aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLAN-AVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHHhcCCCCceEEEecCCcccc
Confidence 44556666554 6777899999999999998874 4444432 2345788887777753
No 270
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.67 E-value=0.051 Score=57.76 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchHHHHHHHH
Q 003721 294 LKNELIQAVHDNQVLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 294 ~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~l 326 (800)
..++++..+..+..+++.||+|+|||+.+-...
T Consensus 10 l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 10 VTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 456677788899999999999999998875443
No 271
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.086 Score=61.72 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=31.9
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
......+...++.++||||+| .+.......+++.+....+...+|+.|
T Consensus 109 ~~~~~~p~~~~~kVvIIDEad--~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 109 DNAQYAPTRGRFKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHhhCcccCCceEEEEcCcc--cCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 333444567789999999999 455555566677766544556666654
No 272
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.12 Score=54.76 Aligned_cols=116 Identities=20% Similarity=0.282 Sum_probs=65.3
Q ss_pred HHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCC
Q 003721 300 QAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD 379 (800)
Q Consensus 300 ~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~ 379 (800)
..+.++.++++.||+|+|||..+.....+.. ..+..|++ .+...++.++...... |
T Consensus 100 ~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f-~~~~el~~~Lk~~~~~------~---------------- 155 (254)
T COG1484 100 EFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLF-ITAPDLLSKLKAAFDE------G---------------- 155 (254)
T ss_pred HHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEE-EEHHHHHHHHHHHHhc------C----------------
Confidence 3445788999999999999988766555553 44445544 4666666555443311 0
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCC---cchHHHHHHHHHhcCCCceEEEeccCCChHHHhhhhc
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIN---TDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFF 454 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~---~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f~ 454 (800)
.....|.+ .+.+++++||||.--.... .+.++.++......+ .. ++|.-.+...+...|.
T Consensus 156 -----~~~~~l~~------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 156 -----RLEEKLLR------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDELFG 218 (254)
T ss_pred -----chHHHHHH------HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHhhcc
Confidence 01223333 2578999999998843333 234444444433322 22 4444445454444443
No 273
>PRK06921 hypothetical protein; Provisional
Probab=95.60 E-value=0.18 Score=53.62 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=25.7
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEec
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQ 341 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~ 341 (800)
.+..+++.|+||+|||..+... ....... +..++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~ai-a~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAA-ANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHH-HHHHhhhcCceEEEEE
Confidence 3678999999999999877544 3333444 45666654
No 274
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.059 Score=63.76 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=30.7
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
......+...++.++||||+| ++..+....+++.+-.-.+...+|+.+
T Consensus 114 ~~~~~~p~~g~~KV~IIDEvh--~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMIDEVH--MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHhCcccCCceEEEEEChh--hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 333444556789999999999 566666666666655433445555544
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.53 E-value=0.086 Score=48.96 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=15.3
Q ss_pred EEEEccCCCchHHHHHHHH
Q 003721 308 LILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 308 viv~apTGSGKT~~~~~~l 326 (800)
+++.||.|+|||+.+-..+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999998774433
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.52 E-value=0.066 Score=51.40 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=61.9
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCce
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~ 381 (800)
+..++.+.+.||.||||||.+-. +.-......|.|.+-- . ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~~-~--------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKL-IAGELEPDEGIVTWGS-T--------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH-HcCCCCCCceEEEECC-e--------------------EEEEEEcc----------
Confidence 35788999999999999977643 3322122344443311 0 12333221
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
.+.|...+..+....+.+.+++++||.- ..++.+....+...+... ...+++.|-.
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~--~~til~~th~ 126 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY--PGTVILVSHD 126 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 5677777766666678889999999987 567766544444444332 2334444433
No 277
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.52 E-value=0.042 Score=58.17 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=29.5
Q ss_pred CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 399 NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 399 ~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
....+.+||+|||| ++..+....+.+-+-......++|+..--
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 46778999999999 67777766666555543445666665543
No 278
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.47 E-value=0.018 Score=69.87 Aligned_cols=118 Identities=19% Similarity=0.048 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHH---HHHHHHHHhCCcccceeeeeee
Q 003721 295 KNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATS---VAKRVAEEFGCRLGEEVGYAIR 371 (800)
Q Consensus 295 Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~q---va~rv~~~~g~~~g~~vg~~~~ 371 (800)
--|++-.+.=++--|..+.||=|||+++.+|++-..+...|--++++.-- ||.- ....+-+.+|..+|........
T Consensus 141 dVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDY-LA~RDaewm~p~y~flGLtVg~i~~~~~~ 219 (1025)
T PRK12900 141 DVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDY-LAQRDKEWMNPVFEFHGLSVGVILNTMRP 219 (1025)
T ss_pred chHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechH-hhhhhHHHHHHHHHHhCCeeeeeCCCCCH
Confidence 34466665444555889999999999999888877777666555555433 3322 2223334456555532211111
Q ss_pred cccccCCCceEEEechHH-----HHHHHhcCC---CCCCCceEEEeccCc
Q 003721 372 FEDCTGPDTVIKYMTDGM-----LLREILIDE---NLSQYSVIMLDEAHE 413 (800)
Q Consensus 372 ~~~~~~~~~~I~~~T~g~-----Ll~~l~~~~---~l~~~~~IIiDEaHe 413 (800)
.+....-.+.|+|+|+.- |.+.+...+ ....+.+.|||||+.
T Consensus 220 ~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 220 EERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred HHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 122233478899999863 344332222 357789999999995
No 279
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.079 Score=61.04 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=20.7
Q ss_pred HHHHcCC---eEEEEccCCCchHHHHHHHHHH
Q 003721 300 QAVHDNQ---VLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 300 ~~i~~~~---~viv~apTGSGKT~~~~~~lle 328 (800)
..+.+++ .++++||+|+||||.+-.+...
T Consensus 28 ~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 28 NALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345554 3799999999999988655443
No 280
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.41 E-value=0.065 Score=53.33 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=67.7
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccC---C
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG---P 378 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~---~ 378 (800)
+..|+.+.+.||.||||||.+-. +.-......|.|.+-- . .+... ...+... ++|......... .
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~g-~-~~~~~-~~~~~~~--------i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQL-LTGDLKPQQGEITLDG-V-PVSDL-EKALSSL--------ISVLNQRPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH-HhccCCCCCCEEEECC-E-EHHHH-HHHHHhh--------EEEEccCCeeecccHH
Confidence 45788999999999999987643 3332223455655421 1 11111 1111111 232211100000 0
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 379 DTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 379 ~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
+......+.|...+..+....+.+.+++++||.= ..++......++..+.......-+|+.|--
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 156 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWITHH 156 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 0003345667777766666778899999999987 567766544444444433334445555543
No 281
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.37 E-value=0.052 Score=53.26 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 391 LREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 391 l~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
...+...+.-..+.++|||||| .+..+..-+++|.+-.-..+..+|++|-.+
T Consensus 91 ~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 91 IEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 3333344455789999999999 566677777777776655567777766554
No 282
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.086 Score=59.60 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=27.0
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
..+...+....+.+|||||+| .+...-...+++.+..-.+...+|+
T Consensus 117 ~~~~~~p~~~~~kvvIIdea~--~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 117 ENVRYGPQKGRYRVYIIDEVH--MLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred HHHhhchhcCCeEEEEEeChh--hCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 334445678899999999999 3343344445555443333344444
No 283
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.12 Score=60.20 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=27.5
Q ss_pred cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 396 IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 396 ~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
..+....+.+|||||+| .+..+.+..+++.+....+...+|+.
T Consensus 110 ~~p~~~~~kVVIIDEad--~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 110 LAPLRGGRKVYILDEAH--MMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred hccccCCCeEEEEECcc--ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34567889999999999 34455566666666554344444443
No 284
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.31 E-value=0.22 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHcCC---eEEEEccCCCchHHHHHHH
Q 003721 298 LIQAVHDNQ---VLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 298 ~i~~i~~~~---~viv~apTGSGKT~~~~~~ 325 (800)
+...+.+++ .+++.||+|+|||+.+-..
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 333444443 4555899999999887544
No 285
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.30 E-value=0.14 Score=66.90 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=77.5
Q ss_pred cCCchHHHHHHHHHHHc--CCeEEEEccCCCchHHHHHHHH--HHhhc-cCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 003721 288 SLPIFKLKNELIQAVHD--NQVLILIGETGSGKTTQLAQYL--AEAGY-TTKGKIGCTQPRRVAATSVAKRVAEEFGCRL 362 (800)
Q Consensus 288 ~lPi~~~Q~~~i~~i~~--~~~viv~apTGSGKT~~~~~~l--le~~~-~~~~~il~~~P~r~la~qva~rv~~~~g~~~ 362 (800)
...+.+-|.+++..+.. ++.++|.|..|+||||.+-..+ ++... ..+..|+.++||--+|..+.. .|...
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~A 1039 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVDA 1039 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcch
Confidence 34578999999999876 4799999999999998864322 22111 224478889999887765432 23211
Q ss_pred cceeeeeeecccccCCCceEEEechHHHHHHH-----hcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceE
Q 003721 363 GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREI-----LIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRL 437 (800)
Q Consensus 363 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l-----~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ki 437 (800)
.|-..++... .........++|||||+= |+++..+..+++.+.. .+.++
T Consensus 1040 ----------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~garv 1093 (1747)
T PRK13709 1040 ----------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRA 1093 (1747)
T ss_pred ----------------------hhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCEE
Confidence 1212222110 001122345899999998 8888777777766542 34677
Q ss_pred EEeccC
Q 003721 438 IVTSAT 443 (800)
Q Consensus 438 I~lSAT 443 (800)
|++-=+
T Consensus 1094 VLVGD~ 1099 (1747)
T PRK13709 1094 VSSGDT 1099 (1747)
T ss_pred EEecch
Confidence 766533
No 286
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.28 E-value=0.06 Score=58.32 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=36.7
Q ss_pred HHHHHH-HHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc--CCCeEEEecchHHHH
Q 003721 294 LKNELI-QAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT--TKGKIGCTQPRRVAA 347 (800)
Q Consensus 294 ~Q~~~i-~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~--~~~~il~~~P~r~la 347 (800)
.+.+.+ .++..+.+++|+|+|||||||.+-. ++..... ...+++++....++.
T Consensus 120 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 120 AQRDVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhccCCCceEEEECCchhhc
Confidence 344444 4467788999999999999998744 4444222 246888888877763
No 287
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.26 E-value=0.31 Score=53.02 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=58.9
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE-ecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceE
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC-TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 382 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~-~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I 382 (800)
.++.+++.|++|+|||..+.....+. ...+..+.+ ..| .++..+... ++. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l-~~~g~~v~~~~~~--~l~~~lk~~----~~~------------------~--- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL-AKKGVSSTLLHFP--EFIRELKNS----ISD------------------G--- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEEHH--HHHHHHHHH----Hhc------------------C---
Confidence 35689999999999998876544443 334444443 344 333333222 110 0
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC--CCceEEEeccCCChHHHhhhh
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR--PDLRLIVTSATLDAERFSGYF 453 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~--~~~kiI~lSATl~~~~~~~~f 453 (800)
+....++ .+.+++++||||+..-.........++..+...| ...++|++| -++.+.+...|
T Consensus 207 ---~~~~~l~------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TS-Nl~~~el~~~~ 269 (306)
T PRK08939 207 ---SVKEKID------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTS-NFDFDELEHHL 269 (306)
T ss_pred ---cHHHHHH------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEEC-CCCHHHHHHHH
Confidence 1111222 2568999999999843333222223444443322 344455544 45555555555
No 288
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.25 E-value=0.1 Score=64.45 Aligned_cols=119 Identities=26% Similarity=0.345 Sum_probs=61.6
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEec
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMT 386 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T 386 (800)
+++++||||+|||..+- .+.+..+.....++.+- .-+. +-...++...|.+.| .+||. .
T Consensus 598 ~~lf~Gp~GvGKT~lA~-~La~~l~~~~~~~~~~d-mse~--~~~~~~~~l~g~~~g-yvg~~----------------~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL-ALAELLYGGEQNLITIN-MSEF--QEAHTVSRLKGSPPG-YVGYG----------------E 656 (852)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhCCCcceEEEe-HHHh--hhhhhhccccCCCCC-ccccc----------------c
Confidence 58999999999997764 44444443333333332 1111 111223333343332 13332 2
Q ss_pred hHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-----------CCceEEEeccCCChHHHhhhh
Q 003721 387 DGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-----------PDLRLIVTSATLDAERFSGYF 453 (800)
Q Consensus 387 ~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-----------~~~kiI~lSATl~~~~~~~~f 453 (800)
.|.|...+.. ..+++|++||++ -.+.++...++..+-..+ .+ .+++||..+....+...+
T Consensus 657 ~g~L~~~v~~----~p~svvllDEie--ka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n-~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRR----KPYSVVLLDEVE--KAHPDVLELFYQVFDKGVMEDGEGREIDFKN-TVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHh----CCCcEEEEechh--hcCHHHHHHHHHHhhcceeecCCCcEEeccc-cEEEEeCCCchHHHHHhc
Confidence 3445444433 468999999998 455554433333332211 22 467777777766555543
No 289
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.22 E-value=0.1 Score=56.23 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.3
Q ss_pred CCeEEEEccCCCchHHHHH
Q 003721 305 NQVLILIGETGSGKTTQLA 323 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~ 323 (800)
+..+++.||+|+|||+.+-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4479999999999998874
No 290
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.18 E-value=0.091 Score=60.14 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=25.3
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecc
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQP 342 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P 342 (800)
+.+++.||+|+|||+.+- .+.......+.+++|+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHcCCCEEEeeH
Confidence 468999999999997764 444443444667777654
No 291
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.14 E-value=0.04 Score=68.65 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=88.1
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCC--CceEEEeccchhhcCCCCCee
Q 003721 499 DILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPG--GRKVVVATNIAEASLTIDGIF 576 (800)
Q Consensus 499 ~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g--~~kVLVAT~iae~GIdip~v~ 576 (800)
++|+|..-....+.+...+... ++....++|+++.+.|..+++.|.++ ..-.+++|.+.+.|+|+-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999988888777777664 46688899999999999999999985 567778888999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC---CCeEEEccChHHhhh
Q 003721 577 YVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG---PGKCYRLYTESAYRS 634 (800)
Q Consensus 577 ~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g---~G~~~~L~t~~~~~~ 634 (800)
.||.++. +..++...|...||-|-| +=..|++.++...+.
T Consensus 784 ~vi~~d~------------------~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 784 TVILFDP------------------WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eEEEecc------------------ccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 9997777 666666666666665554 677899998876543
No 292
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.079 Score=62.70 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
+...+...+....+.+|||||+| .+.......+++.+..-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad--~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChH--hCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 33344445667889999999999 555555666666665555566666654
No 293
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=0.071 Score=60.78 Aligned_cols=133 Identities=22% Similarity=0.217 Sum_probs=70.7
Q ss_pred EEccCCCchHHHHHHHHHHhhccCCC-eEEEecchHHHHHHHHHH----HHHH--hC--Ccccceeeeeeecc---cccC
Q 003721 310 LIGETGSGKTTQLAQYLAEAGYTTKG-KIGCTQPRRVAATSVAKR----VAEE--FG--CRLGEEVGYAIRFE---DCTG 377 (800)
Q Consensus 310 v~apTGSGKT~~~~~~lle~~~~~~~-~il~~~P~r~la~qva~r----v~~~--~g--~~~g~~vg~~~~~~---~~~~ 377 (800)
..+.||||||.+....|++. +.+|- .-++.+..-....-.... ++.. +. ...+..+- .++-. .-.+
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i-~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENI-EIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCcee-eeeeecccCccC
Confidence 45789999999887777775 44333 445444332222211111 1111 11 11111110 01111 1134
Q ss_pred CCceEEEechHHHHHHHhcCC-------CCCCCce-EEEeccCcCCCCcc-------------hHHHHHHHHHhcCCCce
Q 003721 378 PDTVIKYMTDGMLLREILIDE-------NLSQYSV-IMLDEAHERTINTD-------------VLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 378 ~~~~I~~~T~g~Ll~~l~~~~-------~l~~~~~-IIiDEaHer~~~~d-------------~l~~~lk~l~~~~~~~k 436 (800)
....|.++|.+.|...+.... .+.+..+ .+-||||. +++. -+...+.......++--
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahh--ln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHH--LNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhh--hhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 567899999887766553321 2444554 45699994 3332 24445555556677777
Q ss_pred EEEeccCCCh
Q 003721 437 LIVTSATLDA 446 (800)
Q Consensus 437 iI~lSATl~~ 446 (800)
++.+|||.+.
T Consensus 158 ~lef~at~~k 167 (812)
T COG3421 158 LLEFSATIPK 167 (812)
T ss_pred eehhhhcCCc
Confidence 8889999974
No 294
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.14 E-value=0.078 Score=55.23 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=37.4
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
..+..+++.|++|||||+.+.+++.+. ...+.+++|+.-.. -..++.+++ +.+|..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~~g~~~~y~~~e~-~~~~~~~~~-~~~g~~ 78 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LKQGKKVYVITTEN-TSKSYLKQM-ESVKID 78 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-HhCCCEEEEEEcCC-CHHHHHHHH-HHCCCC
Confidence 457789999999999999998888775 34566777665432 233444443 334443
No 295
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.057 Score=52.47 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=61.3
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCce
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~ 381 (800)
+.+++.+.|.|++||||||.+-. +.-......|.+.+--. .. ......++. ..++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~-l~g~~~~~~G~i~~~~~-~~-~~~~~~~~~--------~~i~~~~q---------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRA-IAGLLKPTSGEILIDGK-DI-AKLPLEELR--------RRIGYVPQ---------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH-HhCCCCCCccEEEECCE-Ec-ccCCHHHHH--------hceEEEee----------
Confidence 35778999999999999976643 33221222334332111 00 000000110 11222211
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCC-CceEEEeccC
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRP-DLRLIVTSAT 443 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~-~~kiI~lSAT 443 (800)
.+.|...+.........+.+++++||.- ..++......+.+.+..... +..+++.|--
T Consensus 81 ---lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 81 ---LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5667666655555566778999999998 67776654444444433222 3445555543
No 296
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.15 Score=61.02 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=31.2
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
+...+...|....+.++|||||| .+.......+++.+-.-.+...+|+++
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~--~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVH--MLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChh--hCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 44444555677899999999999 555556666666655433334344433
No 297
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.026 Score=57.65 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHhhhCCCHHHHHHHHHHcC---CCCCHHHHHHHHHHHhh
Q 003721 17 SKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYG---ADLPNYLVRTLFNVIHT 76 (800)
Q Consensus 17 skv~~el~~hlg~~d~~laefii~l~~~s~~~~~F~~~l~~~g---~~~~~~~~~~l~~~i~~ 76 (800)
.||...|+.++||.|..||-=|.++++++.|..+|-.+|++-. -+|||.||..++-+|-.
T Consensus 262 ~kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~IgD 324 (334)
T KOG3938|consen 262 EKINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAIGD 324 (334)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhhhH
Confidence 3888999999999999999999999999999999999999984 46999999999998865
No 298
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.09 E-value=0.085 Score=56.40 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=66.9
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCC-----eE-EEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCC
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKG-----KI-GCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD 379 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~-----~i-l~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~ 379 (800)
.+++++|+||-|||+.+-.+.-.+...... .| .+-.|...-....+..+-..+|.+....-
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~------------- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD------------- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC-------------
Confidence 489999999999999887777655322111 24 45556666666677777777775542200
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCc----chHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINT----DVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~----d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
.+.-.+.. .++. + .--++.++||||+|.-...+ .-.+..+|.+... -++.+|++ .|.+
T Consensus 129 -~~~~~~~~-~~~l-l---r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~~ 190 (302)
T PF05621_consen 129 -RVAKLEQQ-VLRL-L---RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTRE 190 (302)
T ss_pred -CHHHHHHH-HHHH-H---HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccHH
Confidence 00000000 1111 1 12467899999999422222 1356667776543 34555654 4554
No 299
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.091 Score=62.22 Aligned_cols=48 Identities=25% Similarity=0.500 Sum_probs=31.4
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
..+...+...++.++||||+| ++..+....+++.+-.-.+...+|+.+
T Consensus 109 ~~~~~~p~~~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 109 ENVKYLPSRSRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHhccccCCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 333445667889999999999 566665666666665544455555544
No 300
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.06 E-value=0.16 Score=57.67 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=23.7
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEec
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQ 341 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~ 341 (800)
+.+++.||+|+|||..+ +.+.+..... +.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 45899999999999776 4444443333 34677764
No 301
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.06 E-value=0.14 Score=54.62 Aligned_cols=54 Identities=24% Similarity=0.368 Sum_probs=37.2
Q ss_pred HHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHH
Q 003721 300 QAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRV 354 (800)
Q Consensus 300 ~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv 354 (800)
.-+..+..++|.|+||+|||+.+.+++.......+.+++++.- -.-..+++.++
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~-E~~~~~~~~r~ 78 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL-EEPVVRTARRL 78 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc-ccCHHHHHHHH
Confidence 3456788999999999999999988887764443667776542 22234444444
No 302
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.05 E-value=0.045 Score=65.83 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=54.9
Q ss_pred hcCCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHH---HHhhccCCCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 287 RSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYL---AEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 287 ~~lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~l---le~~~~~~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
++.|+.+-|.+++.. ....++|.|..|||||+++..-+ +......+.+|+++..++.+|..+..|+.+.+|
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 347899999888764 34568999999999998875543 333333455899999999999999999987765
No 303
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.09 Score=61.66 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=28.4
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
..+...+....+.++|||||| .+.......+++.+-.-.+...+|+++
T Consensus 109 ~~~~~~P~~~~~KVIIIDEad--~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAH--MLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHhchhhCCcEEEEEechH--hCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 333445566788999999999 445544455555554433344444444
No 304
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.23 Score=55.32 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
+.+.+...+....+.+|||||+| .++......+++.+..-.++..+|++|...
T Consensus 129 l~~~~~~~~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 129 LISFFGLTAAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred HHHHhCcCcccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 44444444556789999999999 556666777777776544455566655544
No 305
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.01 E-value=0.085 Score=54.92 Aligned_cols=40 Identities=8% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecc
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQP 342 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P 342 (800)
+..+..+++.|++|+|||+.+.+++... ..++.+++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g~~~~yi~~ 60 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF-LQNGYSVSYVST 60 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEeC
Confidence 4567899999999999999988887764 345567776653
No 306
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.95 E-value=0.12 Score=58.31 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchHHHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQYLA 327 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~ll 327 (800)
.+++|+||+|+|||+.+-..+-
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999988755543
No 307
>CHL00181 cbbX CbbX; Provisional
Probab=94.94 E-value=0.14 Score=55.23 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.4
Q ss_pred CCeEEEEccCCCchHHHHHHH
Q 003721 305 NQVLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~ 325 (800)
+.++++.||+|+|||+.+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999887544
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.079 Score=52.36 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=65.2
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec-chHHHHHHHHHHHHHHhCCcccceeeeeeecccccCC--
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ-PRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP-- 378 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~-P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~-- 378 (800)
+..++.+.+.||.||||||.+- .+.-......|.+.+-- +..... ...+.. .++|..........
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~-~i~G~~~~~~G~i~~~g~~~~~~~---~~~~~~--------~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLK-LLLRLYDPTSGEILIDGVDLRDLD---LESLRK--------NIAYVPQDPFLFSGTI 92 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHH-HHHcCCCCCCCEEEECCEEhhhcC---HHHHHh--------hEEEEcCCchhccchH
Confidence 4578899999999999997663 33332223455554421 111100 011111 12221111000000
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 379 DTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 379 ~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
...+ .+.|...+..+......+.+++++||-= ..++......+.+.+........+|+.|-.
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~tii~~sh~ 154 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKGKTVIVIAHR 154 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 0001 5667666666666667888999999976 567766555444444443334444444443
No 309
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.13 Score=59.46 Aligned_cols=48 Identities=27% Similarity=0.418 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
+.......+....+.++|||||| .+..+....+++.+....+...+|+
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 33444455667889999999999 5555555555665544333443443
No 310
>PTZ00293 thymidine kinase; Provisional
Probab=94.89 E-value=0.12 Score=52.62 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=30.6
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchH
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRR 344 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r 344 (800)
.|...++.||.+||||+.++..+... ...+.+++++-|..
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y-~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRF-TYSEKKCVVIKYSK 42 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHH-HHcCCceEEEEecc
Confidence 35678899999999999888877665 33456788777753
No 311
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.89 E-value=0.061 Score=64.95 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
+.+-|.+++.. .+..++|.|..|||||+++..-+...... ...+|+++..|+.+|.++..|+.+.+|
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 45668887765 34568899999999998877666554322 234899999999999999999988765
No 312
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.86 E-value=0.12 Score=51.86 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=28.8
Q ss_pred HHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 391 LREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 391 l~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
.+.+...+......+|||||+| .+..+....+++.+....++..+|++
T Consensus 85 ~~~~~~~~~~~~~kviiide~~--~l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAE--RMNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 4444555667889999999999 34444455555555443334444443
No 313
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.82 E-value=0.072 Score=58.20 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=36.7
Q ss_pred HHHHHHHH-HHHcCCeEEEEccCCCchHHHHHHHHHHhh--ccCCCeEEEecchHHH
Q 003721 293 KLKNELIQ-AVHDNQVLILIGETGSGKTTQLAQYLAEAG--YTTKGKIGCTQPRRVA 346 (800)
Q Consensus 293 ~~Q~~~i~-~i~~~~~viv~apTGSGKT~~~~~~lle~~--~~~~~~il~~~P~r~l 346 (800)
+.|.+.+. ++..+.+++|+|+|||||||.+- .++... .....+++++..+.++
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTLVN-AIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHhhhhcCCCceEEEEcCCCcc
Confidence 44566665 47788899999999999998764 444432 2234578877777654
No 314
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.81 E-value=0.18 Score=57.83 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=27.2
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhc--cCCCeEEEecchHHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGY--TTKGKIGCTQPRRVAATSVA 351 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~--~~~~~il~~~P~r~la~qva 351 (800)
+.+++.|++|+|||..+ +.+..... ..+.+++|+.+ ..+...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHH
Confidence 45899999999999766 44444322 23446776554 34444433
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.80 E-value=0.11 Score=51.81 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=63.4
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
.+..+..+.++||.||||||.+-. +.-......|.|.+-- ..++|......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~-l~Gl~~p~~G~i~~~g----------------------~~i~~~~q~~~------ 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI-LAGQLIPNGDNDEWDG----------------------ITPVYKPQYID------ 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH-HHcCCCCCCcEEEECC----------------------EEEEEEcccCC------
Confidence 356788999999999999987743 3332223455554421 11333211000
Q ss_pred eEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC--CCceEEEeccCC
Q 003721 381 VIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR--PDLRLIVTSATL 444 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~--~~~kiI~lSATl 444 (800)
.+.|+-.+.......+.+.+++++||-- ..++......+...+.... ...-+|+.|--+
T Consensus 72 ----LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 72 ----LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 5667666666666677888999999987 5666654443333333221 123455555443
No 316
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.78 E-value=0.17 Score=59.66 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=25.4
Q ss_pred CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 397 DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 397 ~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
.+....+.+|||||+| .+..+....+++.+....+...+|+
T Consensus 114 ~p~~g~~kVIIIDEad--~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 114 APMEGRYKVFIIDEAH--MLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred hhhcCCceEEEEEChH--hCCHHHHHHHHHHhhccCCCEEEEE
Confidence 3456788999999999 4555555556665544333333333
No 317
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.78 E-value=0.16 Score=58.24 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=23.7
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecc
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQP 342 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P 342 (800)
+.+++.||+|+|||..+- .+....... +.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 359999999999997764 333332322 346777654
No 318
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.018 Score=57.36 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=61.2
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec-chHHHHHHHHHHHHHHhCCcccceeeeeeeccccc---C
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ-PRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCT---G 377 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~-P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~---~ 377 (800)
+..|+.+.++||.||||||.+-. +.-......|.|.+-- +..... +....+.. .++|........ +
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~-l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~--------~i~~~~q~~~~~~~~t 92 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRC-IAGLEEPDSGSILIDGEDLTDLE-DELPPLRR--------RIGMVFQDFALFPHLT 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH-HhCCCCCCceEEEECCEEccccc-hhHHHHhh--------cEEEEecCCccCCCCC
Confidence 45788999999999999987643 3322222345555421 110000 00011111 123221111100 1
Q ss_pred CCceEEE-echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHH
Q 003721 378 PDTVIKY-MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQL 428 (800)
Q Consensus 378 ~~~~I~~-~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l 428 (800)
-...+.+ .+.|...+.......+.+..++|+||-- ..+|.+....+.+.+
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l 143 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALL 143 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHH
Confidence 1112222 6778777777777778899999999988 567766544443333
No 319
>PLN03025 replication factor C subunit; Provisional
Probab=94.71 E-value=0.16 Score=55.57 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=18.0
Q ss_pred CeEEEEccCCCchHHHHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle 328 (800)
..+++.||+|+|||+.+...+.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999887554433
No 320
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.094 Score=62.31 Aligned_cols=45 Identities=29% Similarity=0.509 Sum_probs=28.2
Q ss_pred HhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEe
Q 003721 394 ILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVT 440 (800)
Q Consensus 394 l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~l 440 (800)
+...+....+.+|||||+| .+..+....+++.+..-.+...+|+.
T Consensus 112 ~~~~p~~~~~kVvIIDEa~--~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 112 VQFRPALARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HhhCcccCCeEEEEEeChH--hCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3444567889999999999 55555555666665443334444443
No 321
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.66 E-value=0.045 Score=58.37 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVA 346 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~l 346 (800)
+..+.+++++|+|||||||.+-.+ ++..-....+++++....+.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~al-l~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNAL-LEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHH-HHHCHTTTSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchHHHHH-hhhccccccceEEeccccce
Confidence 567889999999999999998554 44423333688887766553
No 322
>PHA02244 ATPase-like protein
Probab=94.64 E-value=0.18 Score=55.59 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCeEEEEccCCCchHHHHHHHHHH
Q 003721 296 NELIQAVHDNQVLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 296 ~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle 328 (800)
..+...+..+..+++.||||+|||+.+-.....
T Consensus 110 ~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 110 ADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 345556778889999999999999887554443
No 323
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.64 E-value=0.05 Score=59.95 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=33.2
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHH
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAA 347 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la 347 (800)
++..+.+++|+|||||||||.+- .++.. +....+++.+..+.++.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~-aLl~~-i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSK-TLISA-IPPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHH-HHHcc-cCCCCCEEEECCCcccc
Confidence 46788899999999999998874 44443 33455788887777653
No 324
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.64 E-value=0.29 Score=59.17 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=15.5
Q ss_pred eEEEEccCCCchHHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~l 326 (800)
.+.|.|+||+|||+++-..+
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999998765443
No 325
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.63 E-value=0.15 Score=56.79 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=19.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCccc
Q 003721 670 VDPPSPQALISAMEQLYSLGALDE 693 (800)
Q Consensus 670 ~~~p~~~~i~~al~~L~~lgald~ 693 (800)
++|.....+...++.|..+|.|+-
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 456667788899999999999975
No 326
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=94.62 E-value=0.06 Score=45.80 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhhCCCchHHHHHHHHHhhhCC-----CHHHHHHHHHHcCCCCCHHHHHHHHHHHhhh
Q 003721 15 LLSKICSELETHLGFIDKVLAEFISESGRNSE-----TVEIFDDKLKEYGADLPNYLVRTLFNVIHTI 77 (800)
Q Consensus 15 lvskv~~el~~hlg~~d~~laefii~l~~~s~-----~~~~F~~~l~~~g~~~~~~~~~~l~~~i~~~ 77 (800)
|-.-|+..|.+.+|.+|.+|++||+++.++.. +..+....|...=.+=...|+..||+++..-
T Consensus 4 lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~ 71 (77)
T PF01480_consen 4 LKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISA 71 (77)
T ss_dssp HHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999765 6777777777652355678999999988754
No 327
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.60 E-value=0.14 Score=59.36 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=78.2
Q ss_pred HHHHHHHHHHc---------CCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 294 LKNELIQAVHD---------NQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 294 ~Q~~~i~~i~~---------~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
+|.-++..+.. -+.+++.-|=|-|||+.+....+-..+. .+..|+++++++.-|..+.+.+.......
T Consensus 2 wQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~ 81 (477)
T PF03354_consen 2 WQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEAS 81 (477)
T ss_pred cHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 46666665441 2357888899999998866554443332 24589999999999999888776544221
Q ss_pred --ccceeeeeeecccccCCCceEEEechHHHHHHHhcCC---CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCce
Q 003721 362 --LGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDE---NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLR 436 (800)
Q Consensus 362 --~g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~k 436 (800)
+....+..+ .......|.+-..+..++.+..++ .=.+.+++|+||+|+ ...+-+...++.-...+++..
T Consensus 82 ~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~--~~~~~~~~~l~~g~~~r~~pl 155 (477)
T PF03354_consen 82 PELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHA--HKDDELYDALESGMGARPNPL 155 (477)
T ss_pred hhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCC--CCCHHHHHHHHhhhccCCCce
Confidence 110000000 000111222211111111111111 123578999999994 344335555555555566655
Q ss_pred EE-EeccCCC
Q 003721 437 LI-VTSATLD 445 (800)
Q Consensus 437 iI-~lSATl~ 445 (800)
++ +.||..+
T Consensus 156 ~~~ISTag~~ 165 (477)
T PF03354_consen 156 IIIISTAGDD 165 (477)
T ss_pred EEEEeCCCCC
Confidence 54 4555554
No 328
>PRK06620 hypothetical protein; Validated
Probab=94.57 E-value=0.1 Score=53.74 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.6
Q ss_pred CeEEEEccCCCchHHHHH
Q 003721 306 QVLILIGETGSGKTTQLA 323 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~ 323 (800)
+.+++.||+|||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997764
No 329
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.56 E-value=0.22 Score=56.25 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=74.8
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhcc--CCCeEEEecchHH-HHHHHHHHHHHHhCCcccceeeeeeec---cccc-CC
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYT--TKGKIGCTQPRRV-AATSVAKRVAEEFGCRLGEEVGYAIRF---EDCT-GP 378 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~--~~~~il~~~P~r~-la~qva~rv~~~~g~~~g~~vg~~~~~---~~~~-~~ 378 (800)
+..++.|..|||||..+...++..... .+.+++|+-|+.. +...+...+...+.. .|...-+.... .-.. +.
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEecCC
Confidence 457899999999998888777766666 5678999988876 666677766544321 11100011000 0001 11
Q ss_pred CceEEEech-HHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 379 DTVIKYMTD-GMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 379 ~~~I~~~T~-g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
+..|.|..- .--.+ + .....+..+.+|||.+. ..+.+..++.++... .....+++|.|++.
T Consensus 81 g~~i~f~g~~d~~~~-i---k~~~~~~~~~idEa~~~--~~~~~~~l~~rlr~~-~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-L---KSGAGIAIIWFEEASQL--TFEDIKELIPRLRET-GGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecccCChhH-h---hCcceeeeehhhhhhhc--CHHHHHHHHHHhhcc-CCccEEEEEcCcCC
Confidence 345555332 10000 0 12334789999999953 445666666554321 12124788888864
No 330
>PRK04195 replication factor C large subunit; Provisional
Probab=94.54 E-value=0.26 Score=57.27 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCchHHHHHHHHHH
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle 328 (800)
.+.+++.||+|+|||+.+-.++-+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999888555443
No 331
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.48 E-value=0.12 Score=61.71 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=27.3
Q ss_pred HhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 394 ILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 394 l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
+...+....+.+||||||| .+..+....+++.+-.-.....+|+
T Consensus 113 a~~~p~~~~~KViIIDEad--~Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 113 AQFAPVQARWKVYVIDECH--MLSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HhhChhcCCceEEEEECcc--ccCHHHHHHHHHHHhcCCcCeEEEE
Confidence 3344556788999999999 4555555566666654333343443
No 332
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.47 E-value=0.09 Score=52.05 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=65.2
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCce
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 381 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~ 381 (800)
+..++.+.+.||.||||||.+-. +.-......|.|.+-- . .+...-...+.. .++|........ +.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~g-~-~~~~~~~~~~~~--------~i~~~~q~~~~~-~~tv 92 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARL-ILGLLRPTSGRVRLDG-A-DISQWDPNELGD--------HVGYLPQDDELF-SGSI 92 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH-HHhccCCCCCeEEECC-E-EcccCCHHHHHh--------heEEECCCCccc-cCcH
Confidence 35788999999999999987643 3332223345554311 0 000000001111 122211100000 0000
Q ss_pred E-EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccCC
Q 003721 382 I-KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSATL 444 (800)
Q Consensus 382 I-~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSATl 444 (800)
. -+.+.|...+..+....+.+.+++++||.= ..++......+...+.... ....+|+.|--+
T Consensus 93 ~~~lLS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 93 AENILSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHCcCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 0 015677777777767778899999999987 5666654433333333221 244455555443
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.46 E-value=0.17 Score=49.55 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=66.1
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec-chHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ-PRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~-P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
+..|..+.+.||.||||||.+-. +.-......|.|.+-- +.... .... .. ...+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~-i~G~~~~~~G~v~~~g~~~~~~--~~~~----~~----~~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKI-LSGLYKPDSGEILVDGKEVSFA--SPRD----AR----RAGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHH-HhCCCCCCCeEEEECCEECCcC--CHHH----HH----hcCeEEEEe---------
Confidence 45788999999999999987743 3322223345554321 11000 0000 00 011333221
Q ss_pred eEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccCC
Q 003721 381 VIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSATL 444 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSATl 444 (800)
.+.|+..+.......+.+.+++++||.= ..++......+...+.... ...-+|+.|-.+
T Consensus 83 ----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 83 ----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6778777777777778889999999987 5677665444444443321 244455555443
No 334
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.46 E-value=0.069 Score=61.18 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=38.8
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
+..+..+++.|++|+|||+.+.+++.... ..+.+++|+.-. +...|+..+ ++.+|.
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~E-es~~qi~~r-a~rlg~ 132 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGE-ESASQIKLR-AERLGL 132 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEcc-ccHHHHHHH-HHHcCC
Confidence 44577899999999999999988887653 346688887643 334455555 344443
No 335
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.23 Score=55.88 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=29.6
Q ss_pred HHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 391 LREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 391 l~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
.+.....+...++.++||||+| .++......+++.+.. .|+-.+++++||
T Consensus 106 ~~~~~~~p~~~~~kViiIDead--~m~~~aanaLLk~LEe-p~~~~~fIL~a~ 155 (394)
T PRK07940 106 VTIAARRPSTGRWRIVVIEDAD--RLTERAANALLKAVEE-PPPRTVWLLCAP 155 (394)
T ss_pred HHHHHhCcccCCcEEEEEechh--hcCHHHHHHHHHHhhc-CCCCCeEEEEEC
Confidence 3334445566788999999999 3444444556665543 333344445444
No 336
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.45 E-value=0.16 Score=52.09 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.2
Q ss_pred CeEEEEccCCCchHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~ 325 (800)
..+++.||.|+||||.+-..
T Consensus 51 ~h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHH
Confidence 37999999999999877443
No 337
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.43 E-value=0.089 Score=63.17 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCchHHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH
Q 003721 289 LPIFKLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 289 lPi~~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~ 356 (800)
+-+..-|.+++.. +......+|.|=+|+||||.+...+ ......+.+|+.+.-|..++..+..++..
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVALGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHHcCCeEEEEehhhHHHHHHHHHHhc
Confidence 3455567776655 5666778999999999999876544 44456788999999999999988887754
No 338
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.37 E-value=0.094 Score=52.64 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=30.0
Q ss_pred HHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 295 KNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 295 Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
+.+++.. +..+..++++|||||||||.+- .++... ....+++.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~-aL~~~i-~~~~~~i~ie 59 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLN-ALLAFI-PPDERIITIE 59 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHH-HHHhhc-CCCCCEEEEC
Confidence 4555554 6778999999999999998874 344432 2333454443
No 339
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.34 E-value=0.59 Score=54.99 Aligned_cols=137 Identities=21% Similarity=0.267 Sum_probs=83.8
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHHHHHHHHHHHHHHhCC----ccc-ceeeeee--ecccc
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRVAATSVAKRVAEEFGC----RLG-EEVGYAI--RFEDC 375 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~la~qva~rv~~~~g~----~~g-~~vg~~~--~~~~~ 375 (800)
..+-.++..|==.|||+.+...+.-.... .+-+|++++|.+..+..+.+++...+.. ..- ..-|-.+ .+..
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n- 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPD- 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecC-
Confidence 34567888899999998766333222222 4669999999999999999888765421 110 0011111 1111
Q ss_pred cCCCceEEEechHHHHHHHhcCC--CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChHHHhhhh
Q 003721 376 TGPDTVIKYMTDGMLLREILIDE--NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYF 453 (800)
Q Consensus 376 ~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f 453 (800)
.....|.+.+. .+.. .=..++++|||||+ -+..+.+..++--+... +.++|.+|-|-..+....++
T Consensus 332 -G~kstI~FaSa-------rntNsiRGqtfDLLIVDEAq--FIk~~al~~ilp~l~~~--n~k~I~ISS~Ns~~~sTSFL 399 (738)
T PHA03368 332 -GSRSTIVFASS-------HNTNGIRGQDFNLLFVDEAN--FIRPDAVQTIMGFLNQT--NCKIIFVSSTNTGKASTSFL 399 (738)
T ss_pred -CCccEEEEEec-------cCCCCccCCcccEEEEechh--hCCHHHHHHHHHHHhcc--CccEEEEecCCCCccchHHH
Confidence 11124555421 1111 12479999999999 56777777777555443 88999999987665444444
No 340
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.24 E-value=0.48 Score=52.88 Aligned_cols=132 Identities=23% Similarity=0.269 Sum_probs=82.3
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEE--EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG--CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il--~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
.+++.+|=-||||||.+....... ...+.+++ +.-..|.+|.++.+.+++..+.++-.. + ...+
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~l-kk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~------~~~~------ 166 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYL-KKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G------TEKD------ 166 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHH-HHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C------CCCC------
Confidence 368889999999999976655433 22344444 555789999999999998887655221 0 0011
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC--hHHHhhhhc
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD--AERFSGYFF 454 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~--~~~~~~~f~ 454 (800)
|--+.+.-+.......+++||||-|-...++.+....+...-...+|+=.++++-|+.. +...+.-|.
T Consensus 167 ---Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 167 ---PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred ---HHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 11122222222345678999999999445555555444444445578888888888874 334444443
No 341
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.23 E-value=0.17 Score=50.34 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=66.4
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec-ch-----HHHHHHHH--HHHHHHhCCcccceeeeeeecc
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ-PR-----RVAATSVA--KRVAEEFGCRLGEEVGYAIRFE 373 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~-P~-----r~la~qva--~rv~~~~g~~~g~~vg~~~~~~ 373 (800)
+..++.+.+.||.||||||.+-. +.-......|.|.+-- +. ......+. -.+.+.+|..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~-i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~------------ 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKT-LAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLA------------ 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH-HhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH------------
Confidence 35788999999999999986643 3332223455555421 11 11111110 0022222211
Q ss_pred cccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCC--CceEEEeccCC
Q 003721 374 DCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRP--DLRLIVTSATL 444 (800)
Q Consensus 374 ~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~--~~kiI~lSATl 444 (800)
.. ....+.-.+.|.-.+..+....+.+.+++++||.= ..++.+....+.+.+..... +..+|+.|--+
T Consensus 89 ~~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 89 HL--ADRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred hH--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 00 01123345677776666666677889999999987 56766544333333332211 34555555443
No 342
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.22 E-value=0.074 Score=58.45 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHH
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAA 347 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la 347 (800)
++..+.+++|+|+|||||||.+- .++.. .....+|+.+.-+.++.
T Consensus 156 ~v~~~~nili~G~tgSGKTTll~-aL~~~-ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFTN-AALRE-IPAIERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHHH-HHHhh-CCCCCeEEEecCCCccc
Confidence 46778899999999999998874 44544 34456787776665544
No 343
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.21 E-value=0.1 Score=53.89 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=30.4
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccC-----CCeEEEecch
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-----KGKIGCTQPR 343 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-----~~~il~~~P~ 343 (800)
+..++.+.|.|++|+|||+.+.+.+....... +..++++..-
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 34578999999999999998888777653322 1577776553
No 344
>PRK09087 hypothetical protein; Validated
Probab=94.19 E-value=0.32 Score=50.54 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=16.6
Q ss_pred CCeEEEEccCCCchHHHHHH
Q 003721 305 NQVLILIGETGSGKTTQLAQ 324 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~ 324 (800)
++.++++||+|||||+.+-.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45699999999999987753
No 345
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.18 E-value=2.5 Score=49.46 Aligned_cols=278 Identities=21% Similarity=0.299 Sum_probs=140.6
Q ss_pred HHHHHHHc---CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC-cccceeeeeee-
Q 003721 297 ELIQAVHD---NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC-RLGEEVGYAIR- 371 (800)
Q Consensus 297 ~~i~~i~~---~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~-~~g~~vg~~~~- 371 (800)
+.+++|.+ +..+-++|.-|-|||.++-+.+..+....-..|.++.|.-+-...+..-+.+-|.. ..-..+.|.+-
T Consensus 264 ~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~ 343 (1011)
T KOG2036|consen 264 TFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQ 343 (1011)
T ss_pred HHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhh
Confidence 34555543 34678899999999988877777653333337899999988777777666554421 11111222211
Q ss_pred ------------cccccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 372 ------------FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 372 ------------~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
.+......-.|-|..|.- ...+.+..++|||||- .+. +-+++.++ ..-+++
T Consensus 344 s~np~fkkaivRInifr~hrQtIQYi~P~D-------~~kl~q~eLlVIDEAA--AIP----Lplvk~Li----gPylVf 406 (1011)
T KOG2036|consen 344 STNPDFKKAIVRINIFREHRQTIQYISPHD-------HQKLGQAELLVIDEAA--AIP----LPLVKKLI----GPYLVF 406 (1011)
T ss_pred hcChhhhhhEEEEEEeccccceeEeeccch-------hhhccCCcEEEechhh--cCC----HHHHHHhh----cceeEE
Confidence 111111122233333321 1237788999999998 332 34455554 234788
Q ss_pred eccCCChH---------HHhhhhcCCCcc---------cCCCCccc-----eeEEeccccchhhHHHHHHHHHHHhhcC-
Q 003721 440 TSATLDAE---------RFSGYFFNCNIF---------SIPGRTFP-----VDINYSRQEVTDYLDSALITVLQIHVDE- 495 (800)
Q Consensus 440 lSATl~~~---------~~~~~f~~~~~~---------~i~g~~~~-----v~~~~~~~~~~~~~~~~l~~v~~i~~~~- 495 (800)
|+.|++.- ++...+...... .-.|++++ -.+.|.+ .|.++.-+..++-+....
T Consensus 407 maSTinGYEGTGRSlSlKLlqqLr~qs~~~~~~~~k~~~~sg~~~kei~l~EsIRY~~---gD~IE~WLn~lLcLDas~~ 483 (1011)
T KOG2036|consen 407 MASTINGYEGTGRSLSLKLLQQLRKQSRASNARENKSSSKSGRTLKEISLEESIRYAP---GDPIEKWLNRLLCLDASNC 483 (1011)
T ss_pred EeecccccccccceehHHHHHHHHHhccccccccCcccccccceeccccccccccCCC---CCcHHHHHhhhhhhccccC
Confidence 99998631 233222211100 01223221 1223322 222333232222221111
Q ss_pred ---------CCCCEEEEcCCHHHH---HHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEec
Q 003721 496 ---------PEGDILLFLTGQEEI---DFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVAT 563 (800)
Q Consensus 496 ---------~~g~iLVF~~s~~~i---~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT 563 (800)
+...-|.+++. ... ...++.+.+++- .+-|..||-+-|.+-| ++...+...+-|| -+
T Consensus 484 ~~~~~g~P~Ps~CeLyyVnR-dtLFSyh~~sE~FLqr~m-------al~VSSHYKNSPNDLQ--llsDAPaH~LFvL-l~ 552 (1011)
T KOG2036|consen 484 LPITSGCPSPSACELYYVNR-DTLFSYHKASEAFLQRLM-------ALYVSSHYKNSPNDLQ--LLSDAPAHHLFVL-LG 552 (1011)
T ss_pred CcccCCCCChhHceEEEEcc-hhhhcCCchHHHHHHHHH-------HHHHHHhccCCchhhh--hhccCcccceEEE-ec
Confidence 01112333331 111 011222222221 1234456666555544 3444455554444 46
Q ss_pred cchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCCCC
Q 003721 564 NIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTGPG 621 (800)
Q Consensus 564 ~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g~G 621 (800)
++-..+=+||++-+||+.++ .| -+|..+..+-.+|.-|.+..
T Consensus 553 PVd~~~~~iPdvlcviQv~l---------EG-------~isr~si~~sL~~G~~a~Gd 594 (1011)
T KOG2036|consen 553 PVDPSQNAIPDVLCVIQVCL---------EG-------RISRQSIENSLRRGKRAAGD 594 (1011)
T ss_pred CcCcccCCCCcceEEEEEee---------cc-------eecHHHHHHHHhccccccCC
Confidence 77777779999999998877 12 57777888877777776633
No 346
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.18 E-value=0.3 Score=59.17 Aligned_cols=21 Identities=43% Similarity=0.457 Sum_probs=17.1
Q ss_pred CeEEEEccCCCchHHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~l 326 (800)
..+++.||+|+|||+.+-...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 379999999999998875433
No 347
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.13 E-value=0.14 Score=62.28 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=82.6
Q ss_pred chHHHHHHHHHH----HcCCeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchHHHHHH-H-HHHHHHHhCCcc
Q 003721 291 IFKLKNELIQAV----HDNQVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRRVAATS-V-AKRVAEEFGCRL 362 (800)
Q Consensus 291 i~~~Q~~~i~~i----~~~~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r~la~q-v-a~rv~~~~g~~~ 362 (800)
+..||..-++.+ .+|-+-|+.-+.|-|||.|..-++....... -|.=+|++|+-++.+- + .+|++- |.++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP--glKI 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP--GLKI 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC--cceE
Confidence 356788777664 4566899999999999988776666544333 3467888899876653 1 234322 2222
Q ss_pred cceeeeee----ecccccCC-CceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceE
Q 003721 363 GEEVGYAI----RFEDCTGP-DTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRL 437 (800)
Q Consensus 363 g~~vg~~~----~~~~~~~~-~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~ki 437 (800)
-...|..- .-..+..+ ...+.++++..+++-+. ...-.+|.|+|+||||. .-+ |-...+..++..+.. +-
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~-AFkrkrWqyLvLDEaqn-IKn--fksqrWQAllnfnsq-rR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT-AFKRKRWQYLVLDEAQN-IKN--FKSQRWQALLNFNSQ-RR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH-HHHhhccceeehhhhhh-hcc--hhHHHHHHHhccchh-he
Confidence 11222110 01112233 35666666665554332 12246789999999993 222 223333344433333 34
Q ss_pred EEeccCCC
Q 003721 438 IVTSATLD 445 (800)
Q Consensus 438 I~lSATl~ 445 (800)
++++.|+=
T Consensus 769 LLLtgTPL 776 (1958)
T KOG0391|consen 769 LLLTGTPL 776 (1958)
T ss_pred eeecCCch
Confidence 66777763
No 348
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.25 Score=58.71 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=27.8
Q ss_pred HhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 394 ILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 394 l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
+...+....+.+|||||+| .+...-...+++.+..-.+...+|+++
T Consensus 119 ~~~~P~~~~~KVvIIdEad--~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 119 VRYGPQKGRYRVYIIDEVH--MLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHhhhhcCCCEEEEEeChh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3445678899999999999 344444445555544433344445544
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.12 E-value=0.21 Score=49.74 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=62.3
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhcc--CC-------CeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeec
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYT--TK-------GKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRF 372 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~--~~-------~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~ 372 (800)
+..+..+.+.||.||||||.+-..+...+.. .+ ..++++.. ..+.+.++.. +
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q---------~~~l~~~~L~------~---- 78 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ---------LQFLIDVGLG------Y---- 78 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH---------HHHHHHcCCC------c----
Confidence 4568899999999999999875433211100 00 01222211 1122223211 0
Q ss_pred ccccCCCceEEEechHHHHHHHhcCCCCCC--CceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccCC
Q 003721 373 EDCTGPDTVIKYMTDGMLLREILIDENLSQ--YSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSATL 444 (800)
Q Consensus 373 ~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~--~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSATl 444 (800)
. ..+..+.-...|+..+..+....+.+ .+++++||.= ..++......+...+.... ...-+|+.|--+
T Consensus 79 ~---~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 79 L---TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred c---ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 0 01112223455666666666666778 8999999987 5666654443333333221 245566655554
No 350
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.22 Score=55.61 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=20.3
Q ss_pred HHHHHHcCC---eEEEEccCCCchHHHHHHH
Q 003721 298 LIQAVHDNQ---VLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 298 ~i~~i~~~~---~viv~apTGSGKT~~~~~~ 325 (800)
+...+.+++ .++++||.|+|||+.+-..
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 334444543 6889999999999887654
No 351
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.09 E-value=0.31 Score=56.78 Aligned_cols=43 Identities=19% Similarity=0.505 Sum_probs=30.9
Q ss_pred CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 397 DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 397 ~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
.+....+.++|||||| .+..+....+++.+-.-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 4556789999999999 566666667777766655556666654
No 352
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.08 E-value=0.21 Score=55.01 Aligned_cols=53 Identities=25% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 389 MLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 389 ~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
.+.+.+...+....+.++|||+|| .++......+||.+-.-.++..+|++|.-
T Consensus 119 ~l~~~~~~~~~~~~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 119 ALLDFCGVGTHRGGARVVVLYPAE--ALNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHHhccCCccCCceEEEEechh--hcCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 455555555667889999999999 45666667777777654445555555544
No 353
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.06 E-value=0.11 Score=58.98 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=29.4
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEccCCCchHHHHHHHHHHh
Q 003721 289 LPIFKLKNELIQAVHD--NQVLILIGETGSGKTTQLAQYLAEA 329 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~--~~~viv~apTGSGKT~~~~~~lle~ 329 (800)
|..++.+.+.+..+.+ +.-++++|||||||||.+...+.+.
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4445666666665543 4578999999999999987666554
No 354
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.25 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=18.8
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhc
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGY 331 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~ 331 (800)
.++++.|+||+|||.++ .++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHH
Confidence 36999999999999665 55655533
No 355
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.02 E-value=0.17 Score=59.51 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=22.6
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEec
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQ 341 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~ 341 (800)
+.++|.|++|+|||..+-.+..+.... .+.+++|+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 348999999999997664433332211 244666654
No 356
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.93 E-value=0.11 Score=62.99 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 292 FKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 292 ~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
.+-|.+++.. ....++|.|..|||||+.+..-+...... ...+|+++..++.+|.++-.|+.+.+|
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 4567777764 35679999999999999987766654322 234899999999999999999988775
No 357
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.91 E-value=0.11 Score=59.67 Aligned_cols=63 Identities=30% Similarity=0.430 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-----CCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 295 KNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-----KGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 295 Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-----~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
|.++|.. ..+..+||.|..||||||+++.-+....+.. .+.|+++.|.+....-++.-+ -++|
T Consensus 217 QneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL-PeLG 284 (747)
T COG3973 217 QNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL-PELG 284 (747)
T ss_pred HHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc-hhhc
Confidence 5665542 4677899999999999999887666554432 335999999999887765544 3444
No 358
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.33 Score=53.03 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
+.+.+...+....+.++|||+|| .++.....+++|.+-.-.++..+|++|..
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPAD--AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHh--hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 33444445667789999999999 55666677778866554456666666543
No 359
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=93.90 E-value=0.14 Score=50.92 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=28.7
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchH
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRR 344 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r 344 (800)
+..++.||-+||||+.+...+... ...+.+++++-|..
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~-~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRY-EIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-HHTT-EEEEEEEST
T ss_pred EEEEEECCcCChhHHHHHHHHHHH-HhCCCeEEEEEecc
Confidence 457899999999999988777654 33566888888863
No 360
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.90 E-value=0.14 Score=55.35 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=37.6
Q ss_pred hHHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHH
Q 003721 292 FKLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAA 347 (800)
Q Consensus 292 ~~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la 347 (800)
.+-+.+++.. +....+++++|.|||||||.+-.++.. .....+++++.-+.+|-
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~--i~~~eRvItiEDtaELq 213 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGF--IDSDERVITIEDTAELQ 213 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc--CCCcccEEEEeehhhhc
Confidence 4446666655 445559999999999999887544332 23344999998887754
No 361
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.88 E-value=0.41 Score=53.05 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=28.8
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
+...+...+......+|||||+| .+..+....+++.+....++..+|+
T Consensus 105 l~~~~~~~p~~~~~~vviidea~--~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVH--MLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChh--hcCHHHHHHHHHHHhCCccceeEEE
Confidence 44444555667888999999999 4444445555655533233343343
No 362
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.87 E-value=0.12 Score=63.17 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
+.+-|.+++.. ....++|.|..|||||+++..-+...... ...+|+++..|+.+|.++..|+.+.++
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45668887764 34579999999999999887666554321 234899999999999999999988775
No 363
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.83 E-value=0.12 Score=55.24 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHHc----CCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEE-EecchHHHHHHHHHHHHHHhCCc
Q 003721 297 ELIQAVHD----NQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIG-CTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 297 ~~i~~i~~----~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il-~~~P~r~la~qva~rv~~~~g~~ 361 (800)
++.+.+.+ .+.+.|+|+.|+|||+.+..++.+..... -..++ +.........++...+...++..
T Consensus 7 ~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 7 KLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 44455544 56889999999999999987775522111 22333 33333333355556666666543
No 364
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.82 E-value=0.26 Score=48.67 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=35.3
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHH
Q 003721 308 LILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAE 356 (800)
Q Consensus 308 viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~ 356 (800)
++|.|++|||||+.+.+++.+ .+.+++|+...+..-.++.+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999999888765 345888887777766677777654
No 365
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.81 E-value=0.078 Score=61.00 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=38.2
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
+.......|.-.+|.+.||||+| |+.....-++||.+-.-.+.+.+|+ ||-+
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIl--ATTe 158 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFIL--ATTE 158 (515)
T ss_pred HHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEE--ecCC
Confidence 44444556778999999999999 8999889999998876444554444 5543
No 366
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.79 E-value=0.33 Score=53.46 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=19.5
Q ss_pred HHHcCC--eEEEEccCCCchHHHHHHHH
Q 003721 301 AVHDNQ--VLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 301 ~i~~~~--~viv~apTGSGKT~~~~~~l 326 (800)
++..++ +.|+.||.|+||||.+-...
T Consensus 42 ~v~~~~l~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 42 AVEAGHLHSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred HHhcCCCceeEEECCCCCCHHHHHHHHH
Confidence 344443 79999999999998875433
No 367
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.79 E-value=0.1 Score=53.51 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=21.9
Q ss_pred HHHHHHHc--CCeEEEEccCCCchHHHHHHHHH
Q 003721 297 ELIQAVHD--NQVLILIGETGSGKTTQLAQYLA 327 (800)
Q Consensus 297 ~~i~~i~~--~~~viv~apTGSGKT~~~~~~ll 327 (800)
++.+.+.. ++.++|.||.|+|||+.+-..+-
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 34444544 47899999999999987654443
No 368
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.78 E-value=0.17 Score=55.06 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=34.8
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAAT 348 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~ 348 (800)
+..++.+.|.||+|||||+.+.+++.+. ...++.++++-.-..+..
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~-~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEA-QKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEcccchhHH
Confidence 4567899999999999999998888776 345678888765544433
No 369
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.76 E-value=0.24 Score=53.89 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=29.6
Q ss_pred CCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 397 DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 397 ~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
.+....+.+||||||+ .+..+..-.+++.+.....+.++|+.+-
T Consensus 104 ~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 104 SPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 3345789999999999 5666666666666655555565555553
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.73 E-value=0.4 Score=54.50 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=16.4
Q ss_pred eEEEEccCCCchHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~ 325 (800)
.+++.||+|+|||+.+-..
T Consensus 38 ~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 38 SMILWGPPGTGKTTLARII 56 (413)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999887544
No 371
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.70 E-value=0.15 Score=62.26 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhc---cCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGY---TTKGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~---~~~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
+.+-|.+++... ...++|.|..|||||+++..-+..... ....+|+++.-|+.+|.++..|+.+.++.
T Consensus 10 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 10 LNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred cCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 566788877643 457899999999999887765554321 12348999999999999999999887753
No 372
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.68 E-value=0.28 Score=57.90 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=25.7
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK 430 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~ 430 (800)
......+...++.++||||+| ++..+....+++.+-.
T Consensus 109 ~~v~~~p~~~~~kViIIDE~~--~Lt~~a~naLLKtLEe 145 (559)
T PRK05563 109 DKVKYAPSEAKYKVYIIDEVH--MLSTGAFNALLKTLEE 145 (559)
T ss_pred HHHhhCcccCCeEEEEEECcc--cCCHHHHHHHHHHhcC
Confidence 333444667889999999999 5666666666665543
No 373
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.39 Score=57.79 Aligned_cols=119 Identities=27% Similarity=0.312 Sum_probs=63.8
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEe
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYM 385 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~ 385 (800)
.+.++.||||.|||..+- .+.+..+... ..++-.-.-+-. -...+++..|.+.|- |||...
T Consensus 522 gsFlF~GPTGVGKTELAk-aLA~~Lfg~e-~aliR~DMSEy~--EkHsVSrLIGaPPGY-VGyeeG-------------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAK-ALAEALFGDE-QALIRIDMSEYM--EKHSVSRLIGAPPGY-VGYEEG-------------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHH-HHHHHhcCCC-ccceeechHHHH--HHHHHHHHhCCCCCC-ceeccc--------------
Confidence 378999999999997764 4555545433 233322222211 123456667777654 776432
Q ss_pred chHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-----------CCCceEEEeccCCChHHHhhh
Q 003721 386 TDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-----------RPDLRLIVTSATLDAERFSGY 452 (800)
Q Consensus 386 T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-----------~~~~kiI~lSATl~~~~~~~~ 452 (800)
|.|...... +.|++|.+||+. -.+.|++.-++..+-.- +.+ -+|+||.-+....+...
T Consensus 583 --G~LTEaVRr----~PySViLlDEIE--KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrN-tiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 583 --GQLTEAVRR----KPYSVILLDEIE--KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRN-TIIIMTSNAGSEEILRD 651 (786)
T ss_pred --cchhHhhhc----CCCeEEEechhh--hcCHHHHHHHHHHhcCCeeecCCCCEEecce-eEEEEecccchHHHHhh
Confidence 223222222 349999999976 34455544444333210 122 35666666665554443
No 374
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.62 E-value=0.35 Score=57.66 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=29.7
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
..+...+....+.++||||+| .+..+....+++.+-. .|.--++++.+|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~--~Ls~~a~naLLK~LEe-pp~~tifIL~tt 159 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVH--MLSQAAFNAFLKTLEE-PPSYAIFILATT 159 (614)
T ss_pred HHHhhCcccCCcEEEEEECcc--cCCHHHHHHHHHHHhC-CCCCeEEEEEeC
Confidence 333455678899999999999 4444445555555544 344334444444
No 375
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.59 E-value=0.69 Score=50.28 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=16.5
Q ss_pred eEEEEccCCCchHHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~l 326 (800)
.+++.||+|+|||+.+-...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998875443
No 376
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.55 E-value=0.16 Score=50.97 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=33.1
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHH
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRV 345 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~ 345 (800)
.....+++.+++|-|||+++.-..+.. ...+.+|+++|=.+-
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~~V~ivQFlKg 61 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRA-VGHGKKVGVVQFIKG 61 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecC
Confidence 456789999999999999987766665 556778888876553
No 377
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.52 E-value=0.093 Score=53.27 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=23.8
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecch
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPR 343 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~ 343 (800)
.++|+|||||||||.+...+.......++.++.+.-.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 5899999999999997544333221234566655443
No 378
>PRK09354 recA recombinase A; Provisional
Probab=93.49 E-value=0.2 Score=55.11 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAAT 348 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~ 348 (800)
+..++.+.|.||+|||||+.+.+++.+. ...++.++|+-.-..+-.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~-~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEA-QKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEECCccchHH
Confidence 3447799999999999999998888776 345778888776555443
No 379
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.49 E-value=0.19 Score=49.03 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=28.2
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHH
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRV 345 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~ 345 (800)
-+.|..++|.|||+++.-..+.. ...+.+++++|=.+-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~~v~~vQFlKg 41 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA-LGHGYRVGVVQFLKG 41 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEEeCC
Confidence 46677788999999987777665 455778888765554
No 380
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.48 E-value=0.18 Score=49.96 Aligned_cols=126 Identities=19% Similarity=0.266 Sum_probs=64.9
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec-chHHHHHHHHHHHHHHhCCcccceeeeeeecccccCC--
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ-PRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP-- 378 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~-P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~-- 378 (800)
+..++.+.|+||.||||||.+-. +.-......|.+.+-- +..... ..+. ..++|..........
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~g~~~~~~~----~~~~--------~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKI-ILGLLKPDSGEIKVLGKDIKKEP----EEVK--------RRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH-HhCCCCCCCeEEEECCEEcccch----Hhhh--------ccEEEEecCCccccCCc
Confidence 45788999999999999987643 3322222345554311 111000 1111 113332211100000
Q ss_pred -CceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEecc
Q 003721 379 -DTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSA 442 (800)
Q Consensus 379 -~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSA 442 (800)
...+. .+.|...+.........+.+++++||.- ..+|......++..+.... ....+|+.|-
T Consensus 90 v~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 90 VRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred HHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 00011 5667766666666677889999999988 5677665444444443322 1344555554
No 381
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.47 E-value=0.14 Score=57.11 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=34.9
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKR 353 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~r 353 (800)
+..+..+++.|++|+|||+.+.+++... ...+++++|+.-. +...|+..+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~-a~~g~~VlYvs~E-Es~~qi~~R 128 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARL-AKRGGKVLYVSGE-ESPEQIKLR 128 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH-HhcCCeEEEEECC-cCHHHHHHH
Confidence 4457899999999999999998887665 3345688887543 223444444
No 382
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=0.22 Score=58.70 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=28.4
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEE-ecchHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGC-TQPRRVA 346 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~-~~P~r~l 346 (800)
+..|+.+-++||.||||||++-+ +++.+. ..|+|++ =.|-+.+
T Consensus 491 i~pGe~vALVGPSGsGKSTiasL--L~rfY~PtsG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASL--LLRFYDPTSGRILLDGVPISDI 535 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHH--HHHhcCCCCCeEEECCeehhhc
Confidence 56789999999999999998853 333343 3445543 3344433
No 383
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.38 E-value=0.2 Score=49.24 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=61.4
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE--------ecchHHHHHHHHHHHHHHhCCcccceeeeeeecc
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC--------TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFE 373 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~--------~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~ 373 (800)
+..++.+.++||.||||||.+-. +.-......|.|.+ +.+...+. ...+.+.+. +.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~-l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~---~~tv~~nl~--------~~---- 87 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRA-LAGLWPWGSGRIGMPEGEDLLFLPQRPYLP---LGTLREQLI--------YP---- 87 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH-HhcCCCCCCceEEECCCceEEEECCCCccc---cccHHHHhh--------cc----
Confidence 45788999999999999987643 33222223444433 22111100 000111000 00
Q ss_pred cccCCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 374 DCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 374 ~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
...-.+.|...+.......+.+.+++++||-= ..++.+....+...+... ...+|+.|--
T Consensus 88 -------~~~~LS~G~~~rv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~--~~tiiivsh~ 147 (166)
T cd03223 88 -------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT-SALDEESEDRLYQLLKEL--GITVISVGHR 147 (166)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc-cccCHHHHHHHHHHHHHh--CCEEEEEeCC
Confidence 11224556666655666667889999999987 566666544444444332 2345555544
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.37 E-value=0.17 Score=58.85 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=39.7
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
+..+..++|.||+|+|||+...+++.+. ..++.+++|+. .-+-..|+..+. +.+|.
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~-~~~ge~~~y~s-~eEs~~~i~~~~-~~lg~ 315 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENA-CANKERAILFA-YEESRAQLLRNA-YSWGI 315 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEE-eeCCHHHHHHHH-HHcCC
Confidence 3456799999999999999999998876 34556777755 444455665553 44443
No 385
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.37 E-value=0.79 Score=45.85 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=56.6
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC-cccceeeeeeecccccCCCceEE
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC-RLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~-~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
++-.+++||-.||||+-+++.+... ...+.++++.-|..- .| ++. .+....| . ...-+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~-~~~g~~v~vfkp~iD------~R----~~~~~V~Sr~G--------~-~~~A~~ 63 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRY-KEAGMKVLVFKPAID------TR----YGVGKVSSRIG--------L-SSEAVV 63 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHH-HHcCCeEEEEecccc------cc----cccceeeeccC--------C-ccccee
Confidence 4567899999999999888777655 334556776666421 11 110 0001111 0 111133
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK 430 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~ 430 (800)
+-.+.-+...+........+++|.||||+ -++. -+...+.++..
T Consensus 64 i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ--F~~~-~~v~~l~~lad 107 (201)
T COG1435 64 IPSDTDIFDEIAALHEKPPVDCVLIDEAQ--FFDE-ELVYVLNELAD 107 (201)
T ss_pred cCChHHHHHHHHhcccCCCcCEEEEehhH--hCCH-HHHHHHHHHHh
Confidence 33555566665544444448999999999 3333 33444555544
No 386
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.36 E-value=0.5 Score=48.78 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=53.6
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhcc--CCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEE
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYT--TKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKY 384 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~--~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~ 384 (800)
-++|.||+|+|||..+ +.+.+.... .+.+|+|+... .........+.. +
T Consensus 36 ~l~l~G~~G~GKTHLL-~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~--~------------------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLL-QAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD--G------------------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT--T-------------------------
T ss_pred ceEEECCCCCCHHHHH-HHHHHHHHhccccccceeecHH-HHHHHHHHHHHc--c-------------------------
Confidence 5899999999999754 445444332 34466665433 222222222111 0
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCc---chHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINT---DVLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~---d~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
....+.. .+..+++++||.+|.-.-.. +.++.++..+... +.++|+.|...|.
T Consensus 87 -~~~~~~~------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~ 142 (219)
T PF00308_consen 87 -EIEEFKD------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPS 142 (219)
T ss_dssp -SHHHHHH------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TT
T ss_pred -cchhhhh------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCc
Confidence 0111111 24579999999999422211 2455555555543 4567777766553
No 387
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.29 E-value=0.3 Score=57.57 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=27.3
Q ss_pred hcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEE
Q 003721 395 LIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIV 439 (800)
Q Consensus 395 ~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~ 439 (800)
...+...++.++||||+| .+.......+++.+-.-.+...+|+
T Consensus 112 ~~~p~~~~~KVvIIDEa~--~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 112 MFPPASSRYRVYIIDEVH--MLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred HhchhcCCCEEEEEEChh--hcCHHHHHHHHHhhccCCCCEEEEE
Confidence 445667899999999999 5555555566666544333333333
No 388
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.24 E-value=0.51 Score=51.77 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 389 MLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 389 ~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
.+...+...+....+.++|+|++| .++......+++.+....++..+|++|-
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 344445556667889999999999 6777776677776654433444555443
No 389
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.24 E-value=0.12 Score=56.45 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=34.2
Q ss_pred HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 390 LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 390 Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
+.+.+...+....+.++|||+|| .++.....++||.+-.-.++..+|++|.
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred HHHHHhhccccCCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 44444556667889999999999 5555666777777766444555555444
No 390
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.21 E-value=0.1 Score=55.28 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=24.0
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC 339 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~ 339 (800)
...-++|.|||||||||.+...+-.-.......|+-
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlT 159 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILT 159 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEE
Confidence 345789999999999999866554433333334543
No 391
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.13 E-value=0.077 Score=54.94 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=16.8
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 003721 308 LILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 308 viv~apTGSGKT~~~~~~lle 328 (800)
++|.|+.|||||+.+...+-.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999987665544
No 392
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.13 E-value=0.29 Score=54.83 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHcCCeEEEEccCCCchHHHHHHHHHH
Q 003721 298 LIQAVHDNQVLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 298 ~i~~i~~~~~viv~apTGSGKT~~~~~~lle 328 (800)
+++-+..+.+++..||+|+|||..+......
T Consensus 202 l~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 202 LLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred hHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 4467889999999999999999776543333
No 393
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.11 E-value=0.35 Score=56.86 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=39.5
Q ss_pred chHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 386 TDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 386 T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
+.|.-.|.......+++.+++|+||+= -.+|.+....+.+.+....++.-+|+.|
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~T-SaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPT-EHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 456666666667778899999999998 5677777777777776665665555544
No 394
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.11 E-value=0.44 Score=59.80 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=64.1
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecc-hHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCc
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQP-RRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 380 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P-~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~ 380 (800)
....+.++|+||.|+||||.+.+|+... +..+.+... ...-.......+...++...... +.. .......
T Consensus 29 ~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~-~~~--~~~~~~~-- 99 (903)
T PRK04841 29 ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDESDNQPERFASYLIAALQQATNGH-CSK--SEALAQK-- 99 (903)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCcccCCHHHHHHHHHHHHHHhcCcc-cch--hhhhhcc--
Confidence 3456789999999999999999988532 223333332 21111111122222221111000 000 0000000
Q ss_pred eEEEechHHHHHHHhcC-CCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccCCCh
Q 003721 381 VIKYMTDGMLLREILID-ENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSATLDA 446 (800)
Q Consensus 381 ~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSATl~~ 446 (800)
.-..+...++..+... .....--+||||++| .++.......+..+... .+++.+|++|-+.++
T Consensus 100 -~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h--~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 100 -RQYASLSSLFAQLFIELADWHQPLYLVIDDYH--LITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred -CCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcC--cCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 0001112222222211 113455789999999 45555555566666654 567888888877543
No 395
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.00 E-value=0.31 Score=51.79 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=51.8
Q ss_pred hcCcCCCCCceEEEeccchhhcCCCCCeeEEEeCCCccceeecCCCCcccccccccCHHhHHHHhcccCCCC--CCeEEE
Q 003721 548 IFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASALQRAGRAGRTG--PGKCYR 625 (800)
Q Consensus 548 i~~~f~~g~~kVLVAT~iae~GIdip~v~~VId~g~~k~~~yd~~~~~~~l~~~p~S~~~~~QR~GRaGR~g--~G~~~~ 625 (800)
..+.|.+|...|+|-|.++++||.+.+-.-+- |.+.....+...|.|...++|..||+-|++ ..-.|+
T Consensus 53 e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~----------nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~ 122 (278)
T PF13871_consen 53 EKQAFMDGEKDVAIISDAGSTGISLHADRRVK----------NQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYR 122 (278)
T ss_pred HHHHHhCCCceEEEEecccccccchhccccCC----------CCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEE
Confidence 34578899999999999999999987543333 334444445566999999999999999998 344444
Q ss_pred c
Q 003721 626 L 626 (800)
Q Consensus 626 L 626 (800)
+
T Consensus 123 ~ 123 (278)
T PF13871_consen 123 F 123 (278)
T ss_pred E
Confidence 3
No 396
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.00 E-value=0.25 Score=53.90 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAAT 348 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~ 348 (800)
+..++.+.|.||+|||||+.+.+++.+. ...++.++|+.+-..+-.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~-~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEA-QKLGGTVAFIDAEHALDP 97 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEECccccHHH
Confidence 4457899999999999999998888775 345678888876554443
No 397
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.93 E-value=0.98 Score=44.57 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCC
Q 003721 296 NELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG 335 (800)
Q Consensus 296 ~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~ 335 (800)
+++-.+......|+|.|++|+||++.+ ..+.+......+
T Consensus 13 ~~~~~~a~~~~pVlI~GE~GtGK~~lA-~~IH~~s~r~~~ 51 (168)
T PF00158_consen 13 EQAKRAASSDLPVLITGETGTGKELLA-RAIHNNSPRKNG 51 (168)
T ss_dssp HHHHHHTTSTS-EEEECSTTSSHHHHH-HHHHHCSTTTTS
T ss_pred HHHHHHhCCCCCEEEEcCCCCcHHHHH-HHHHHhhhcccC
Confidence 334444556678999999999999766 566665443333
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.87 E-value=0.24 Score=52.65 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=30.7
Q ss_pred HHHHHHHHH-HH-cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecch
Q 003721 293 KLKNELIQA-VH-DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPR 343 (800)
Q Consensus 293 ~~Q~~~i~~-i~-~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~ 343 (800)
+.|.+.+.. +. .+..++|+|+|||||||.+-..+ ......+.+++.+.-.
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all-~~i~~~~~~iitiEdp 117 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSAL-SELNTPEKNIITVEDP 117 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHH-hhhCCCCCeEEEECCC
Confidence 345555554 33 34579999999999999885443 3333334456655433
No 399
>PHA00729 NTP-binding motif containing protein
Probab=92.86 E-value=0.43 Score=49.23 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.4
Q ss_pred eEEEEccCCCchHHHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQYLA 327 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~ll 327 (800)
+++|.|++|+|||+.+...+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999988755443
No 400
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.86 E-value=0.12 Score=41.86 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=16.3
Q ss_pred CCeEEEEccCCCchHHHHH
Q 003721 305 NQVLILIGETGSGKTTQLA 323 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~ 323 (800)
+..++|+|++||||||.+-
T Consensus 23 g~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLD 41 (62)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4579999999999998853
No 401
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.84 E-value=0.23 Score=49.11 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=29.5
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHH
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRV 345 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~ 345 (800)
.-+.+.+++|-|||+++.-..+.. ...+.+|+++|=.+-
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg 44 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKG 44 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecC
Confidence 357788889999999988777765 456778888765553
No 402
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.82 E-value=0.17 Score=65.28 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC--CCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 293 KLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT--KGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 293 ~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~--~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
+-|.++|. ..+++++|.|.-|||||+++..-++...... -.+++++.=|+.+|.++..|+.+.+.
T Consensus 4 ~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 4 DEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred HHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 45778877 3678999999999999999887777654322 13699999999999999999887664
No 403
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.81 E-value=0.45 Score=56.16 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHcC--CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHH-HHHHH
Q 003721 291 IFKLKNELIQAVHDN--QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVA-KRVAE 356 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~--~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva-~rv~~ 356 (800)
..+||.++++++... +.|++++++-+|||..+..++....-...+.+++++|+..+|.... .++..
T Consensus 17 ~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 17 RTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 457899999998665 5899999999999997766665554455679999999999998866 45543
No 404
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.76 E-value=0.53 Score=56.35 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred HhcCCchHHHHHHHHH----HHcCCeEEEEccCCCchHHHHHHHHHHhhccC----------------------------
Q 003721 286 RRSLPIFKLKNELIQA----VHDNQVLILIGETGSGKTTQLAQYLAEAGYTT---------------------------- 333 (800)
Q Consensus 286 r~~lPi~~~Q~~~i~~----i~~~~~viv~apTGSGKT~~~~~~lle~~~~~---------------------------- 333 (800)
+-+.-.|+.|...+.. +...++.++..|||+|||+.++--.+......
T Consensus 17 ~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 17 EFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Q ss_pred -------------CCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCC----------------------
Q 003721 334 -------------KGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP---------------------- 378 (800)
Q Consensus 334 -------------~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~---------------------- 378 (800)
-.+|.|-.-|-.-..|+.+.+ ...+.+ -..+--+.|..-|.++
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrEl-rrT~Y~-vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~ 174 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVREL-RRTGYR-VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSR 174 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHH-hhcCCC-CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccc
Q ss_pred -----------------------------------------------CceEEEechHHHHHHHhcCCCCCCC--ceEEEe
Q 003721 379 -----------------------------------------------DTVIKYMTDGMLLREILIDENLSQY--SVIMLD 409 (800)
Q Consensus 379 -----------------------------------------------~~~I~~~T~g~Ll~~l~~~~~l~~~--~~IIiD 409 (800)
+..|+||....|++-......--++ ++||+|
T Consensus 175 ~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfD 254 (945)
T KOG1132|consen 175 SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFD 254 (945)
T ss_pred cccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEe
Q ss_pred ccC
Q 003721 410 EAH 412 (800)
Q Consensus 410 EaH 412 (800)
|||
T Consensus 255 EAH 257 (945)
T KOG1132|consen 255 EAH 257 (945)
T ss_pred ccc
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.76 E-value=0.3 Score=57.09 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=49.4
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCChHHHhhhh
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYF 453 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~~~~~~~~f 453 (800)
+.++|.-.|.......+.+.+++|+|||= -.++.+....+...+....|+.-+|-.+-......|....
T Consensus 515 vLS~GEqQRlafARilL~kP~~v~LDEAT-sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~ 583 (604)
T COG4178 515 VLSGGEQQRLAFARLLLHKPKWVFLDEAT-SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQ 583 (604)
T ss_pred hcChhHHHHHHHHHHHHcCCCEEEEecch-hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhh
Confidence 45666655555555678899999999998 4677777777777777767888888777666555555543
No 406
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=92.75 E-value=0.27 Score=53.20 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=39.0
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCc-eEEEecc
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDL-RLIVTSA 442 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~-kiI~lSA 442 (800)
..+.-.+-|+-.+.......+.+.+++|+||-= ..+|......++..+......- ..|++|-
T Consensus 132 ~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~~g~~tvliss 194 (293)
T COG1131 132 KKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELAKEGGVTILLST 194 (293)
T ss_pred cchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 334445667777766666678889999999987 5777765555554444433322 3444443
No 407
>PF12846 AAA_10: AAA-like domain
Probab=92.72 E-value=0.13 Score=55.29 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=32.8
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHH
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAAT 348 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~ 348 (800)
|.+++|+|+||||||+.+.. ++......+..++++-|......
T Consensus 1 n~h~~i~G~tGsGKT~~~~~-l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN-LLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHcCCCEEEEcCCchHHH
Confidence 56899999999999988874 44555666778888888755444
No 408
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.62 E-value=0.25 Score=53.42 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=41.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccC-CCeEEEecc
Q 003721 289 LPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGKIGCTQP 342 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-~~~il~~~P 342 (800)
.|..+-|..-++++.++..++.+||-|+|||+.+.....+..... =.+|+.+-|
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 456677999999999999999999999999977655555542221 237888878
No 409
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.60 E-value=0.84 Score=56.76 Aligned_cols=95 Identities=29% Similarity=0.390 Sum_probs=49.9
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEec
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMT 386 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T 386 (800)
.++++||||+|||+.+ ..+.+..+..+...+++-- ...... ..+...+|.+.| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~~~~~~i~id~-se~~~~--~~~~~LiG~~pg-y~g~~~---------------- 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFDSDDAMVRIDM-SEFMEK--HSVSRLVGAPPG-YVGYEE---------------- 658 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhcCCCcEEEEEh-HHhhhh--hhHHHHhCCCCc-ccccch----------------
Confidence 6899999999999887 4555555544444433322 222211 123344554433 233321
Q ss_pred hHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHH
Q 003721 387 DGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQL 428 (800)
Q Consensus 387 ~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l 428 (800)
.+.+..... ...+++|++||++ ..+.+....++..+
T Consensus 659 ~g~l~~~v~----~~p~~vLllDEie--ka~~~v~~~Ll~il 694 (857)
T PRK10865 659 GGYLTEAVR----RRPYSVILLDEVE--KAHPDVFNILLQVL 694 (857)
T ss_pred hHHHHHHHH----hCCCCeEEEeehh--hCCHHHHHHHHHHH
Confidence 122222222 2346899999999 45555554444433
No 410
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.55 E-value=0.21 Score=49.85 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=33.1
Q ss_pred echHHHHHHHhcCC----CCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccC
Q 003721 385 MTDGMLLREILIDE----NLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSAT 443 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~----~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSAT 443 (800)
.+.|+..+..+... .+.+.+++++||.. ..++......+.+.+.... .+..+|+.|--
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 56665544433222 14678999999999 6777665444444443322 23566666554
No 411
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.50 E-value=1.1 Score=49.38 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=56.1
Q ss_pred EEEccCCCchHHHHHHHHHHhhccCCC--eEEEecchHHHHHHHHHHH---HHHhCCcccceeeeeeeccc--ccCCCce
Q 003721 309 ILIGETGSGKTTQLAQYLAEAGYTTKG--KIGCTQPRRVAATSVAKRV---AEEFGCRLGEEVGYAIRFED--CTGPDTV 381 (800)
Q Consensus 309 iv~apTGSGKT~~~~~~lle~~~~~~~--~il~~~P~r~la~qva~rv---~~~~g~~~g~~vg~~~~~~~--~~~~~~~ 381 (800)
++.++.|+|||+.+...++.......+ .++++.....+...+.... ...... ... ..+...... .......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~nG~~ 78 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFE-IKFNEWNDRKIILPNGSR 78 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS---EEEE-SSEEEETTS-E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcC-cccccCCCCcEEecCceE
Confidence 578999999999988877776665553 5555544444444433321 111111 111 111100011 0123444
Q ss_pred EEEechHH--HHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 382 IKYMTDGM--LLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 382 I~~~T~g~--Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
|.+.+... -...+.. ..+++|++||+- .+..+.....+............++.|-|..
T Consensus 79 i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~ 138 (384)
T PF03237_consen 79 IQFRGADSPDSGDNIRG----FEYDLIIIDEAA--KVPDDAFSELIRRLRATWGGSIRMYISTPPN 138 (384)
T ss_dssp EEEES-----SHHHHHT----S--SEEEEESGG--GSTTHHHHHHHHHHHHCSTT--EEEEEE---
T ss_pred EEEeccccccccccccc----cccceeeeeecc--cCchHHHHHHHHhhhhcccCcceEEeecCCC
Confidence 66555321 1111111 678899999976 2333445555555555544444335555553
No 412
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.44 E-value=0.2 Score=58.28 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHH-----HcCCeEEEEccCCCchHHHHHHHHHHhhccC---------CCeEEEecchHHHHH---HHH
Q 003721 289 LPIFKLKNELIQAV-----HDNQVLILIGETGSGKTTQLAQYLAEAGYTT---------KGKIGCTQPRRVAAT---SVA 351 (800)
Q Consensus 289 lPi~~~Q~~~i~~i-----~~~~~viv~apTGSGKT~~~~~~lle~~~~~---------~~~il~~~P~r~la~---qva 351 (800)
+++.++|..++..+ ..++--|+...-|-|||...+..++..-... ....++++|-+.+.. +++
T Consensus 324 v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~ 403 (901)
T KOG4439|consen 324 VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAEVA 403 (901)
T ss_pred eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHHHH
Q ss_pred HHHHHHhCCcccceeeee-eecccccCCCceEEEechHHHHH-------HHhcCCCCCCC--ceEEEeccCc-CCCCcch
Q 003721 352 KRVAEEFGCRLGEEVGYA-IRFEDCTGPDTVIKYMTDGMLLR-------EILIDENLSQY--SVIMLDEAHE-RTINTDV 420 (800)
Q Consensus 352 ~rv~~~~g~~~g~~vg~~-~~~~~~~~~~~~I~~~T~g~Ll~-------~l~~~~~l~~~--~~IIiDEaHe-r~~~~d~ 420 (800)
+|+.+.. ..+-...|-. -......-....|+++|+...-+ .-.+...|.++ +.||+||||. |.-.+..
T Consensus 404 ~rl~~n~-LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~ 482 (901)
T KOG4439|consen 404 RRLEQNA-LSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQC 482 (901)
T ss_pred HHHhhcc-eEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhH
Q ss_pred HHHHHHHHHhcCCCceEEEeccCC------ChHHHhhhhcCCCc
Q 003721 421 LFGLLKQLVKRRPDLRLIVTSATL------DAERFSGYFFNCNI 458 (800)
Q Consensus 421 l~~~lk~l~~~~~~~kiI~lSATl------~~~~~~~~f~~~~~ 458 (800)
-.++.+--...| -.+|+|+ +.-.+..|+...|.
T Consensus 483 S~AVC~L~a~~R-----WclTGTPiqNn~~DvysLlrFLr~~pF 521 (901)
T KOG4439|consen 483 SKAVCKLSAKSR-----WCLTGTPIQNNLWDVYSLLRFLRCPPF 521 (901)
T ss_pred HHHHHHHhhcce-----eecccCccccchhHHHHHHHHhcCCCc
No 413
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.42 E-value=0.27 Score=60.15 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhcc---CCCeEEEecchHHHHHHHHHHHHHHhC
Q 003721 291 IFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYT---TKGKIGCTQPRRVAATSVAKRVAEEFG 359 (800)
Q Consensus 291 i~~~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~---~~~~il~~~P~r~la~qva~rv~~~~g 359 (800)
+.+-|.+++.. ....++|.|..|||||+++..-+...... ...+|+++.-|+.+|.++..|+.+.++
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 45668888765 34679999999999999887666554322 234899999999999999999987765
No 414
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.40 E-value=0.13 Score=52.06 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=36.7
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC-CCceEEEeccCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR-PDLRLIVTSATL 444 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~-~~~kiI~lSATl 444 (800)
-.+.|...+..+....+.+.+++++||.- ..++......+.+.+.... ...-+|+.|--+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 35666666666666667888999999998 6777765444444443322 234455555443
No 415
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.36 E-value=0.64 Score=51.15 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 392 REILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 392 ~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
..+...+....+.++|||||| .++......+++.+-.-.++..+|+.|
T Consensus 100 ~~~~~~~~~~~~kvviI~~a~--~~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 100 EEFSKSGVESNKKVYIIEHAD--KMTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HHHhhCCcccCceEEEeehHh--hhCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 334444567789999999999 445555556666665544445455533
No 416
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.36 E-value=0.17 Score=52.88 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=39.4
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC 360 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~ 360 (800)
+..+..++|.||+|||||+.+.+++.+.. ..+.+++|+.- .+-..++.+++ +.+|.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~-ee~~~~i~~~~-~~~g~ 73 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVAL-EEHPVQVRRNM-AQFGW 73 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEe-eCCHHHHHHHH-HHhCC
Confidence 34578999999999999999999988864 45667777653 34455555554 33443
No 417
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.36 E-value=0.2 Score=54.52 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=28.9
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRV 345 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~ 345 (800)
+..+.+++++|||||||||.+- .++.. +....+++++....+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~-al~~~-~~~~~~iv~ied~~E 182 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLK-SLVDE-IPKDERIITIEDTRE 182 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHH-HHHcc-CCccccEEEEcCccc
Confidence 6678899999999999998874 34433 333446666544433
No 418
>PRK10436 hypothetical protein; Provisional
Probab=92.34 E-value=0.29 Score=56.21 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=30.3
Q ss_pred chHHHHHHHHHH--HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe
Q 003721 291 IFKLKNELIQAV--HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT 340 (800)
Q Consensus 291 i~~~Q~~~i~~i--~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~ 340 (800)
..+.+.+.+..+ ..+..++++|||||||||.+... ++.......+|+-+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~-l~~~~~~~~~i~Ti 252 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSA-LQTLNTAQINICSV 252 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHH-HHhhCCCCCEEEEe
Confidence 334455555543 35568999999999999987543 44433334455443
No 419
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.27 E-value=0.32 Score=50.54 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=29.5
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccC-----CCeEEEec
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-----KGKIGCTQ 341 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-----~~~il~~~ 341 (800)
+..+..+.|.||+|||||+.+.+++....... +..++++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 44578999999999999999988877643322 25666655
No 420
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.20 E-value=0.62 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=17.3
Q ss_pred CeEEEEccCCCchHHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~l 326 (800)
+.+++.||+|+|||+.+-.+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 479999999999998875443
No 421
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.14 E-value=0.22 Score=55.14 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=27.6
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhcc-CCCeEEEecchHH
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYT-TKGKIGCTQPRRV 345 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~-~~~~il~~~P~r~ 345 (800)
.+..++|+|||||||||.+-. ++..... .+++|+.+.-..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a-l~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS-MIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH-HHHhhCcCCCCEEEEEcCChh
Confidence 467899999999999998854 4443332 2456776654444
No 422
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.08 E-value=1.6 Score=47.77 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 389 MLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 389 ~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
.+.+.+...+....+.++|||+|| .++......++|.+-. .|+..+|++|.
T Consensus 111 ~i~~~l~~~p~~~~~kVvII~~ae--~m~~~aaNaLLK~LEE-Pp~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPLEAPRKVVVIEDAE--TMNEAAANALLKTLEE-PGNGTLILIAP 161 (314)
T ss_pred HHHHHHccCcccCCceEEEEEchh--hcCHHHHHHHHHHHhC-CCCCeEEEEEC
Confidence 455555566777899999999999 4555555666666644 45665555554
No 423
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.07 E-value=0.55 Score=44.53 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHh
Q 003721 294 LKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEA 329 (800)
Q Consensus 294 ~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~ 329 (800)
++.++-.....+..|+|.|++||||++.+ .++...
T Consensus 10 l~~~l~~~a~~~~pvli~GE~GtGK~~~A-~~lh~~ 44 (138)
T PF14532_consen 10 LRRQLERLAKSSSPVLITGEPGTGKSLLA-RALHRY 44 (138)
T ss_dssp HHHHHHHHHCSSS-EEEECCTTSSHHHHH-HCCHHT
T ss_pred HHHHHHHHhCCCCcEEEEcCCCCCHHHHH-HHHHhh
Confidence 45555556677889999999999999765 444443
No 424
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.90 E-value=0.86 Score=49.75 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=33.3
Q ss_pred HHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 391 LREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 391 l~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
...+...+....++++|||+|| .++.....+++|.+-.-.++.-+|+.|..
T Consensus 97 ~~~~~~~~~~~~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 97 NRLAQESSQLNGYRLFVIEPAD--AMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHhhCcccCCceEEEecchh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3344445567889999999999 45555666777777654445555555443
No 425
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.86 E-value=0.65 Score=53.37 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=21.6
Q ss_pred HHHHHHcCC---eEEEEccCCCchHHHHHHHHHH
Q 003721 298 LIQAVHDNQ---VLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 298 ~i~~i~~~~---~viv~apTGSGKT~~~~~~lle 328 (800)
+...+..++ .+++.||.|+|||+.+-.+.-.
T Consensus 29 L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 29 LKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455543 5789999999999888655443
No 426
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.82 E-value=0.87 Score=45.21 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=67.3
Q ss_pred CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccC-CCceEE
Q 003721 305 NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG-PDTVIK 383 (800)
Q Consensus 305 ~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~-~~~~I~ 383 (800)
..-++|....|=||||++.-.++.. ...+.+|+++|=.+-....--.+..+.++..+. ..|....+...+. ....+
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa-~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~-~~~~~~g~tw~~~~~~~d~- 104 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRA-LGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVE-FHGMGEGFTWETQDREADI- 104 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHH-hcCCCEEEEEEEeecCcchhHHHHHHhhcccee-EEecCCceeCCCcCcHHHH-
Confidence 3457788888999999998877776 666779999886665422222223333322211 1111111111111 11111
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch--HHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV--LFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~--l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
......+.....-..-..|++||+||.- ..+.-++ +..++..+..+.++..+|++-=..+.
T Consensus 105 -~aa~~~w~~a~~~l~~~~ydlviLDEl~-~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~ 167 (198)
T COG2109 105 -AAAKAGWEHAKEALADGKYDLVILDELN-YALRYGLLPLEEVVALLKARPEHTHVIITGRGAPP 167 (198)
T ss_pred -HHHHHHHHHHHHHHhCCCCCEEEEehhh-HHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCH
Confidence 1111111111111122479999999986 3444443 33444444444445555554433343
No 427
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.82 E-value=0.58 Score=46.31 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=32.8
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE 357 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~ 357 (800)
.++|.|++|||||+.+...+.+. +..++++......-.+..+|+..-
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChHHHHHHHHHH
Confidence 58999999999999988776543 335667666555555666666443
No 428
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.82 E-value=0.77 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=18.2
Q ss_pred cCCeEEEEccCCCchHHHHHHHH
Q 003721 304 DNQVLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~l 326 (800)
.++.+++.||+|+||||.+-...
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34569999999999998875443
No 429
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.79 E-value=0.35 Score=50.98 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.2
Q ss_pred CeEEEEccCCCchHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQ 324 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~ 324 (800)
..+++.||+|-||||.+-.
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4799999999999987744
No 430
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.76 E-value=1.2 Score=49.00 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHh
Q 003721 294 LKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEA 329 (800)
Q Consensus 294 ~Q~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~ 329 (800)
..+++-.+...+..|+|.|++|+||++.+ .++...
T Consensus 11 ~~~~~~~~a~~~~pVLI~GE~GtGK~~lA-r~iH~~ 45 (329)
T TIGR02974 11 VLEQVSRLAPLDRPVLIIGERGTGKELIA-ARLHYL 45 (329)
T ss_pred HHHHHHHHhCCCCCEEEECCCCChHHHHH-HHHHHh
Confidence 34455555667788999999999999766 455544
No 431
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.76 E-value=0.19 Score=52.05 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=29.6
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
..+..++|.|++|||||+.+.+++.+.....+.+++|+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 357899999999999999999999887444256777655
No 432
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.74 E-value=0.35 Score=49.20 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=35.6
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSAT 443 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSAT 443 (800)
-.+.|...+..+....+.+.+++++||.- ..++......+.+.+... .....+|+.|--
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDEPF-TAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 34556655555555677889999999998 577766544444433322 123455555543
No 433
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=91.69 E-value=0.74 Score=49.32 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=42.5
Q ss_pred HHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhh-----c----cCCCeEEEec--chHHHHHHHHHHHHHHhCCcc
Q 003721 295 KNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAG-----Y----TTKGKIGCTQ--PRRVAATSVAKRVAEEFGCRL 362 (800)
Q Consensus 295 Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~-----~----~~~~~il~~~--P~r~la~qva~rv~~~~g~~~ 362 (800)
+.++|+- ..++-.+++.|+.|.||||.+++..+... + ...|+++|+. -.|+-+..-.+.+...+|...
T Consensus 78 ~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 78 SPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred ChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4456665 45667778889999999998776555421 2 2345777643 344444444455666666554
Q ss_pred c
Q 003721 363 G 363 (800)
Q Consensus 363 g 363 (800)
+
T Consensus 158 a 158 (402)
T COG3598 158 A 158 (402)
T ss_pred H
Confidence 4
No 434
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.69 E-value=0.16 Score=52.51 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=74.2
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE---ecchHHHHHH---------HHHHHHHHhCCccc---cee
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC---TQPRRVAATS---------VAKRVAEEFGCRLG---EEV 366 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~---~~P~r~la~q---------va~rv~~~~g~~~g---~~v 366 (800)
+.+|..+=++|+.||||||.. ..|.-......|+|.| +.|.-++... -..-....+|..-- ..+
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLl-kliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~ 128 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLL-KLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKV 128 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHH-HHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHH
Confidence 457888999999999999876 3444333334555554 3333222211 00000111110000 000
Q ss_pred eeeeeccccc-CCCceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccCC
Q 003721 367 GYAIRFEDCT-GPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSATL 444 (800)
Q Consensus 367 g~~~~~~~~~-~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSATl 444 (800)
..-+.|.... --+..+.--+.||..|....-..-.+.+++++||+= --.+..|......++... ..+.-+|+.|-.+
T Consensus 129 ~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 129 DEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 0000000000 012335556788988887766667788999999997 344556776666666655 4555556666544
No 435
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.65 E-value=1.1 Score=55.77 Aligned_cols=119 Identities=27% Similarity=0.380 Sum_probs=59.6
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEe
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYM 385 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~ 385 (800)
..+++.||||+|||+.+ ..+.+..+..+..++++- ..+... ...++...|.+.| .+||.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA-~~La~~l~~~~~~~i~~d-~s~~~~--~~~~~~l~g~~~g-~~g~~---------------- 654 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELA-KALAEFLFDDEDAMVRID-MSEYME--KHSVARLIGAPPG-YVGYE---------------- 654 (852)
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHHhcCCCCcEEEEe-chhhcc--cchHHHhcCCCCC-ccCcc----------------
Confidence 35889999999999777 445555444444443322 111111 1112233343322 23331
Q ss_pred chHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC--------CCc--eEEEeccCCChHHHhh
Q 003721 386 TDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR--------PDL--RLIVTSATLDAERFSG 451 (800)
Q Consensus 386 T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~--------~~~--kiI~lSATl~~~~~~~ 451 (800)
..|.|...+.. ..+++|++||++ -.+.++...++..+..-+ -++ .+|+||.......+..
T Consensus 655 ~~g~l~~~v~~----~p~~vlllDeie--ka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~ 724 (852)
T TIGR03346 655 EGGQLTEAVRR----KPYSVVLFDEVE--KAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQE 724 (852)
T ss_pred cccHHHHHHHc----CCCcEEEEeccc--cCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhh
Confidence 12334333332 346799999999 456666555554442211 112 2555666666554443
No 436
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.55 E-value=1.7 Score=42.85 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=16.5
Q ss_pred eEEEEccCCCchHHHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQYLA 327 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~ll 327 (800)
+++++|+.|+||||.+...+-
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 479999999999999866553
No 437
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.53 E-value=0.5 Score=56.07 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=33.2
Q ss_pred chHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 386 TDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 386 T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
+.|.-.+.......+.+-.++|+|||. -.+|......+.+.+.....+..+++.+
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaT-SalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEAT-SALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccc-cccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 345555555555667778999999999 5677766555555554333342333333
No 438
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.52 E-value=2.4 Score=45.95 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=71.6
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEE------EecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccC
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIG------CTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG 377 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il------~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~ 377 (800)
+.+.++++||-|||||+.+--.+.+ ....+...+ .++.-+.+...++..++.++... +...|- .+
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs-------ft 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS-------FT 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc-------cc
Confidence 4678999999999999776655555 122222222 13335666667777777666322 111110 00
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCc-eEEEeccCcCCCCc--chHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 378 PDTVIKYMTDGMLLREILIDENLSQYS-VIMLDEAHERTINT--DVLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 378 ~~~~I~~~T~g~Ll~~l~~~~~l~~~~-~IIiDEaHer~~~~--d~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
-+-..|+..+..+....... ++|+||++-..... -.+..++......+..+-++++|--++.
T Consensus 119 -------e~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 119 -------ENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred -------hhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 01124444444444444443 46778888433222 2455666666656667778888888875
No 439
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.44 E-value=0.94 Score=47.15 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=36.4
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
-.+.|...+..+....+.+.+++++||.- ..++......+.+.+........+|+.|-
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~g~~vi~~sh 196 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEAT-SALDAESEKLVQEALDRAMKGRTTIVIAH 196 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 34566666665656667788999999997 57776655555554443333444455444
No 440
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.42 E-value=0.54 Score=58.30 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=18.2
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhcc
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYT 332 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~ 332 (800)
.++++||||+|||+.+- .+.+..+.
T Consensus 541 ~~lf~Gp~GvGKt~lA~-~LA~~l~~ 565 (821)
T CHL00095 541 SFLFSGPTGVGKTELTK-ALASYFFG 565 (821)
T ss_pred EEEEECCCCCcHHHHHH-HHHHHhcC
Confidence 47899999999997764 34444443
No 441
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.38 E-value=1.1 Score=53.51 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=40.6
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
.+-|.-.|..+....+++.+++|+||+= -.+|.+....+.+.+....++.-+|+.|--+
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~T-SaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPT-ASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 3456666666666778889999999998 4677776666666665555565566666554
No 442
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.36 E-value=0.39 Score=52.10 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=41.2
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
..+.-.+.|+..+.......+.+..++++||.- ..+|......+...+........+|+.|--++
T Consensus 129 ~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~ 193 (301)
T TIGR03522 129 KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ 193 (301)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 334456777777776766778899999999988 56776544444444433333445555555543
No 443
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.36 E-value=0.97 Score=45.05 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=35.8
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccC
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSAT 443 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSAT 443 (800)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+... .....+|+.|--
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5667666666666778899999999987 566665444433333322 124445555544
No 444
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.35 E-value=1.1 Score=47.20 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=67.4
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec-chHHH-HHHHHHHHHHHhCCcccceeeeeeecccccCCC
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ-PRRVA-ATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD 379 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~-P~r~l-a~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~ 379 (800)
+.++..+-++|+.||||||..= .++...-...|.|.+-- +-..+ .....+++.+.+. .+|..--+..++...
T Consensus 36 i~~ge~~glVGESG~GKSTlgr-~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~-~Vgl~~~~~~ryPhe---- 109 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGR-LILGLEEPTSGEILFEGKDITKLSKEERRERVLELLE-KVGLPEEFLYRYPHE---- 109 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHH-HHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHH-HhCCCHHHhhcCCcc----
Confidence 4678999999999999998863 33333233456665521 10000 1112223332221 111000011111111
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcc---hHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 380 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTD---VLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 380 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d---~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
..-|...|........-+.++||.||.- -+++.. ..+.+++.+... -++..++.|--+.
T Consensus 110 -----lSGGQrQRi~IARALal~P~liV~DEpv-SaLDvSiqaqIlnLL~dlq~~-~~lt~lFIsHDL~ 171 (268)
T COG4608 110 -----LSGGQRQRIGIARALALNPKLIVADEPV-SALDVSVQAQILNLLKDLQEE-LGLTYLFISHDLS 171 (268)
T ss_pred -----cCchhhhhHHHHHHHhhCCcEEEecCch-hhcchhHHHHHHHHHHHHHHH-hCCeEEEEEEEHH
Confidence 1334444544555566788999999988 456654 345555555543 3556677766554
No 445
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.24 E-value=0.42 Score=56.56 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=30.2
Q ss_pred CCchHHHHHHHHHH-H-cCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEE
Q 003721 289 LPIFKLKNELIQAV-H-DNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC 339 (800)
Q Consensus 289 lPi~~~Q~~~i~~i-~-~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~ 339 (800)
|-+.+.+.+.+..+ . .+..++++|||||||||.+.. ++........+|+-
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a-~l~~~~~~~~~i~t 349 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYT-ALNILNTEEVNIST 349 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH-HHHhhCCCCceEEE
Confidence 33444555555543 3 456889999999999998744 34443333334443
No 446
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.18 E-value=0.33 Score=49.88 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=25.1
Q ss_pred EEEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch
Q 003721 382 IKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV 420 (800)
Q Consensus 382 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~ 420 (800)
+.-.+.|+..+..+....+.+..++++||.- ..++...
T Consensus 102 ~~~lS~G~~qrv~la~al~~~p~llllDEP~-~~lD~~~ 139 (213)
T PRK15177 102 VSEYSVTMKTHLAFAINLLLPCRLYIADGKL-YTGDNAT 139 (213)
T ss_pred HhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHH
Confidence 3445667766666666677888999999954 2344443
No 447
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.15 E-value=0.78 Score=49.69 Aligned_cols=20 Identities=40% Similarity=0.473 Sum_probs=16.5
Q ss_pred CeEEEEccCCCchHHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~ 325 (800)
+.+++.||+|+|||+.+-.+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~i 50 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHII 50 (305)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46999999999999777543
No 448
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.09 E-value=0.43 Score=48.75 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=16.6
Q ss_pred CeEEEEccCCCchHHHHHH
Q 003721 306 QVLILIGETGSGKTTQLAQ 324 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~ 324 (800)
.++|+.||+|+||||.+..
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 4899999999999998853
No 449
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.04 E-value=0.25 Score=54.90 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=22.4
Q ss_pred HHHHHH-cCCeEEEEccCCCchHHHHHHHHHHh
Q 003721 298 LIQAVH-DNQVLILIGETGSGKTTQLAQYLAEA 329 (800)
Q Consensus 298 ~i~~i~-~~~~viv~apTGSGKT~~~~~~lle~ 329 (800)
+.+.+. .+..++|+|||||||||.+-. ++..
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~a-Ll~~ 157 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAA-IIRE 157 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHH-HHHH
Confidence 334443 678999999999999998743 4443
No 450
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.03 E-value=0.51 Score=51.46 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=29.9
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhcc-----CCCeEEEecc
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYT-----TKGKIGCTQP 342 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~-----~~~~il~~~P 342 (800)
..+..+.|.||+|||||+...+++....+. .+++++|+-.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdt 138 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDT 138 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEc
Confidence 346789999999999999888877755332 2458888753
No 451
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.03 E-value=0.39 Score=55.64 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe
Q 003721 289 LPIFKLKNELIQAVHD--NQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT 340 (800)
Q Consensus 289 lPi~~~Q~~~i~~i~~--~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~ 340 (800)
|.+.+.+.+.+..+.. +..++++|||||||||.+... +......+..++.+
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~-L~~l~~~~~~iiTi 276 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAA-LSRLNTPERNILTV 276 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH-HhccCCCCCcEEEE
Confidence 3344455556655433 347899999999999988544 44333333345443
No 452
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.02 E-value=0.43 Score=50.18 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=36.9
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHH---HHHHHHHhcCCCceEEEeccC
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLF---GLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~---~~lk~l~~~~~~~kiI~lSAT 443 (800)
.-.+.|...+..+....+.+.+++++||.- ..++..... .+++.+... ...-+|+.|--
T Consensus 114 ~~LSgGe~qrv~iaraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsHd 175 (246)
T cd03237 114 PELSGGELQRVAIAACLSKDADIYLLDEPS-AYLDVEQRLMASKVIRRFAEN-NEKTAFVVEHD 175 (246)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 345677777777766778899999999987 566665444 344444322 23445555543
No 453
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=90.92 E-value=0.76 Score=56.01 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=39.9
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
.+.|.-.|..+....+++.+++|+||+= -.+|......+.+.+....++..+|+.|--+
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i~~~l~~~~~~~T~iiItHrl 660 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERFKDRLKRWLAGKTLVLVTHRT 660 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4556666666666778899999999997 4677766666666665555555555555443
No 454
>PRK05973 replicative DNA helicase; Provisional
Probab=90.92 E-value=0.25 Score=51.50 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHH
Q 003721 296 NELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRV 354 (800)
Q Consensus 296 ~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv 354 (800)
.++..-+..+..++|.|++|+|||+.+.+++.+.. ..+.+++|+.- -+-..++..++
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyfSl-Ees~~~i~~R~ 111 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFFTL-EYTEQDVRDRL 111 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEE-eCCHHHHHHHH
Confidence 44555677889999999999999999999888764 44666766532 22234555554
No 455
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.89 E-value=2.1 Score=48.05 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCceEEEeccCcCCCCcc---hHHHHHHHHHhcCCCceEEEeccCCCh
Q 003721 402 QYSVIMLDEAHERTINTD---VLFGLLKQLVKRRPDLRLIVTSATLDA 446 (800)
Q Consensus 402 ~~~~IIiDEaHer~~~~d---~l~~~lk~l~~~~~~~kiI~lSATl~~ 446 (800)
++++++||.++....... .++.++..+.... -++|++|...|.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~--kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG--KQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC--CEEEEEcCCCch
Confidence 789999999995444422 3444444444332 266666655543
No 456
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.81 E-value=0.58 Score=47.56 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=35.2
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEeccC
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSAT 443 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSAT 443 (800)
.-.+.|+..+..+....+.+.+++++||.- ..+|......+...+... ....-+|+.|--
T Consensus 125 ~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 125 LSLSGGQKQRLAIAAALLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345666666666655667788999999987 567766433333333322 123445555543
No 457
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.75 E-value=0.21 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=19.0
Q ss_pred HHcCCeEEEEccCCCchHHHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQLA 323 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~ 323 (800)
+..+..+.+.|+|||||||.+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~ 48 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLK 48 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999998874
No 458
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.72 E-value=0.64 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=18.0
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHH
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAE 328 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle 328 (800)
..+.+++.||+|+|||+.+ ..+.+
T Consensus 215 ~p~GILLyGPPGTGKT~LA-KAlA~ 238 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIA-KAVAN 238 (512)
T ss_pred CCcceEEECCCCCcHHHHH-HHHHH
Confidence 3467999999999999765 34443
No 459
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.71 E-value=0.54 Score=56.93 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=61.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCee
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIF 576 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~ 576 (800)
++++||.+|+++-+..+.+.+.+.+ +..+..+||+++..+|..++.....|..+|||+|.-+- -+.++++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 5679999999999999988887754 45688999999999999999888899999999997543 25567777
Q ss_pred EEE
Q 003721 577 YVI 579 (800)
Q Consensus 577 ~VI 579 (800)
+||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 766
No 460
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.69 E-value=0.73 Score=56.12 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=61.1
Q ss_pred HHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccch
Q 003721 487 TVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIA 566 (800)
Q Consensus 487 ~v~~i~~~~~~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~ia 566 (800)
.++.+.....+.++++.+||..-+..+++.|.+.....+ .....+. +||.|+..+++.+.+.+.+|..+|+|+|+.+
T Consensus 115 ~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 115 LLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 344444444467899999999999999999988765544 2344455 9999999999999999999999999999864
No 461
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=1.7 Score=47.72 Aligned_cols=123 Identities=18% Similarity=0.198 Sum_probs=78.1
Q ss_pred CeEEEEccCCCchHHHHHHHHHHhhccCCC--eEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEE
Q 003721 306 QVLILIGETGSGKTTQLAQYLAEAGYTTKG--KIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 383 (800)
Q Consensus 306 ~~viv~apTGSGKT~~~~~~lle~~~~~~~--~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~ 383 (800)
.+++++|=-||||||....+.+.. ..++. -.+|--..|+.|..+.+..+...++++-. .|+ .+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~-kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--syt-----------e~- 166 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYY-KKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--SYT-----------EA- 166 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHH-HhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe--ccc-----------cc-
Confidence 478899999999999988777654 22233 34566678999988888877777665421 010 00
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLD 445 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl~ 445 (800)
-|-.+...-.....-.++++||+|-.-....+...+...+.......|+.-+++|-|++.
T Consensus 167 --dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 167 --DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred --chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 111111111222234789999999998333444444444444445679998999999985
No 462
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=90.58 E-value=0.79 Score=47.46 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=35.3
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcch---HHHHHHHHHhcCCCceEEEecc
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV---LFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~---l~~~lk~l~~~~~~~kiI~lSA 442 (800)
..+.|.-.+.+.......+..++|+||.= -++|... +...+..+....+...+|+.|-
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~-~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtH 231 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPA-QGLDLIAREQLLNRLEELAASPGAPALLFVTH 231 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 34455555555566677888999999976 3555543 3444444444444556666664
No 463
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.56 E-value=0.95 Score=46.77 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=37.2
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
-.+.|...+..+....+.+.+++++||.= ..++......+...+.....+..+|+.|-.+
T Consensus 139 ~LS~G~~~rv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 198 (229)
T cd03254 139 NLSQGERQLLAIARAMLRDPKILILDEAT-SNIDTETEKLIQEALEKLMKGRTSIIIAHRL 198 (229)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 45667666666666678889999999987 5677665444444443332344455555443
No 464
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=90.55 E-value=0.076 Score=48.45 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.4
Q ss_pred CCCcccccccc---ccccccccccc
Q 003721 85 QSKKKSGRDRK---TNYKAEFENDR 106 (800)
Q Consensus 85 ~~~~~~~~~~~---~g~fv~~~~~~ 106 (800)
++.++.|+||+ |||||+|+|-+
T Consensus 5 vG~~l~GkItgI~~yGAFV~l~~g~ 29 (129)
T COG1098 5 VGSKLKGKITGITPYGAFVELEGGK 29 (129)
T ss_pred ccceEEEEEEeeEecceEEEecCCC
Confidence 68899999999 99999998744
No 465
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.54 E-value=0.25 Score=51.58 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=32.6
Q ss_pred HHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 301 AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 301 ~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
-+..++.++|.|+||+|||+.+.+.+.......+.+++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 35567899999999999999998888876554466777765
No 466
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=90.48 E-value=0.59 Score=51.60 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=35.3
Q ss_pred HHHHHHHHH-HHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHH
Q 003721 293 KLKNELIQA-VHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVA 346 (800)
Q Consensus 293 ~~Q~~~i~~-i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~l 346 (800)
+.+.+++.. +..+.+++++|+|||||||.+-. ++.. .....+++++....++
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a-l~~~-i~~~~riv~iEd~~El 217 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSA-LLAL-VAPDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH-HHcc-CCCCCcEEEECCccee
Confidence 445566665 56677999999999999987743 3333 3344567777666665
No 467
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.48 E-value=0.67 Score=50.29 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=19.9
Q ss_pred HHHcCC--eEEEEccCCCchHHHHHHHH
Q 003721 301 AVHDNQ--VLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 301 ~i~~~~--~viv~apTGSGKT~~~~~~l 326 (800)
.|.+|+ .+|+.||.|+|||+.+-+.+
T Consensus 156 ~ieq~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 156 LIEQNRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred HHHcCCCCceEEecCCCCchHHHHHHHH
Confidence 355554 79999999999998875443
No 468
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.44 E-value=0.5 Score=52.12 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=29.9
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhcc-----CCCeEEEecc
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYT-----TKGKIGCTQP 342 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~-----~~~~il~~~P 342 (800)
..+..+.|.|++|||||+...++++...+. .+++++|+..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 456789999999999999888887765432 1357887765
No 469
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.26 E-value=0.9 Score=54.62 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=47.8
Q ss_pred HHHHHHHHHH----HcC-CeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 003721 293 KLKNELIQAV----HDN-QVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCR 361 (800)
Q Consensus 293 ~~Q~~~i~~i----~~~-~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~ 361 (800)
.-|.+++..+ .++ +..++.|.||||||..+...+.+. +..+++++|...+|.|++..+...++..
T Consensus 12 ~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~----~~p~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 12 GDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV----NRPTLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred hHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 3455555543 343 256799999999998876654432 4579999999999999999998877543
No 470
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=90.25 E-value=0.65 Score=46.68 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=18.7
Q ss_pred HHcCCeEEEEccCCCchHHHH
Q 003721 302 VHDNQVLILIGETGSGKTTQL 322 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~ 322 (800)
+.+|+++=+-||.|+||||.+
T Consensus 25 ae~Gei~GlLG~NGAGKTT~L 45 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLL 45 (245)
T ss_pred eccceEEEEEcCCCCCchhHH
Confidence 468899999999999999875
No 471
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.23 E-value=0.37 Score=51.13 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=30.3
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEec
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQ 341 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~ 341 (800)
..+..++|.|++|+|||+.+.+++.+.. ..+.+++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a-~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA-SRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 3577899999999999999999888753 3466777665
No 472
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.22 E-value=1.8 Score=44.38 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=35.7
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
-.+.|...+.......+.+.+++++||.= ..+|......+++.+.....+..+|+.|-
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sH 190 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRKGRSIILTTH 190 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 34566666665656677889999999987 56776655554444444333433444443
No 473
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=1.4 Score=50.06 Aligned_cols=103 Identities=24% Similarity=0.391 Sum_probs=59.6
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHHHHHhCCcccceeeeeeecccccCCCceEEEec
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMT 386 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv~~~~g~~~g~~vg~~~~~~~~~~~~~~I~~~T 386 (800)
.+++.||.|||||+.+.+......+ +-|-++.|....-.+-..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~F---PFvKiiSpe~miG~sEsaKc~~------------------------------ 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDF---PFVKIISPEDMIGLSESAKCAH------------------------------ 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCC---CeEEEeChHHccCccHHHHHHH------------------------------
Confidence 6899999999999888877765533 3566667765433322222111
Q ss_pred hHHHHHHHhcCCCCCCCceEEEeccCcCCCCcc--------hHHHHHHHHHhcCC--CceEEEeccCCChH
Q 003721 387 DGMLLREILIDENLSQYSVIMLDEAHERTINTD--------VLFGLLKQLVKRRP--DLRLIVTSATLDAE 447 (800)
Q Consensus 387 ~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d--------~l~~~lk~l~~~~~--~~kiI~lSATl~~~ 447 (800)
.+....|..-+..++||+|++. |.++-- ..++.|.-+++..| ..|++++.-|-..+
T Consensus 587 ----i~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 587 ----IKKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred ----HHHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 1111223345678899999987 655422 34455555555433 34666666554433
No 474
>PRK13764 ATPase; Provisional
Probab=90.18 E-value=0.38 Score=56.75 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=29.3
Q ss_pred HHHHH-HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHH
Q 003721 298 LIQAV-HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVA 346 (800)
Q Consensus 298 ~i~~i-~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~l 346 (800)
+++.+ ..+.+++++|||||||||.+ ..+++.....+..|+.+--.+++
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccc
Confidence 34443 44678999999999999987 44555533333333344434443
No 475
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.17 E-value=0.57 Score=47.35 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=34.5
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhc-CCCceEEEecc
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKR-RPDLRLIVTSA 442 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~-~~~~kiI~lSA 442 (800)
.+.|...+..+....+.+..++++||.- ..++......+.+.+... .....+|+.|-
T Consensus 128 LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sH 185 (198)
T TIGR01189 128 LSAGQQRRLALARLWLSRAPLWILDEPT-TALDKAGVALLAGLLRAHLARGGIVLLTTH 185 (198)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 4556665655556667888999999998 567766444444444332 22344555554
No 476
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.16 E-value=0.33 Score=51.20 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=36.0
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHH---HHHHHHhcCCCceEEEeccCC
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFG---LLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~---~lk~l~~~~~~~kiI~lSATl 444 (800)
.-.+.|...+..+....+.+.+++++||.- ..+|...... +++.+.... ...+|+.|--+
T Consensus 119 ~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~-g~tiiivsH~~ 181 (251)
T PRK09544 119 QKLSGGETQRVLLARALLNRPQLLVLDEPT-QGVDVNGQVALYDLIDQLRREL-DCAVLMVSHDL 181 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 345666666666666667888999999987 5677664444 344433221 34455555443
No 477
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.14 E-value=0.98 Score=54.83 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=66.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccc-hhhcCCCCCe
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNI-AEASLTIDGI 575 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~i-ae~GIdip~v 575 (800)
+.+++|.+|++.-+...++.+.+.+... ++.+..+||+++..+|..+++...+|...|+|+|.. +...+.++++
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~-----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l 384 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPL-----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNL 384 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhc-----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhccc
Confidence 5679999999999999988888776433 478999999999999999999999999999999974 4456778888
Q ss_pred eEEE
Q 003721 576 FYVI 579 (800)
Q Consensus 576 ~~VI 579 (800)
.+||
T Consensus 385 ~lvV 388 (681)
T PRK10917 385 GLVI 388 (681)
T ss_pred ceEE
Confidence 8877
No 478
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.14 E-value=0.55 Score=51.41 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHcCCeEEEEccCCCchHHHHHHHHHHhhccC-----CCeEEEecc
Q 003721 302 VHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-----KGKIGCTQP 342 (800)
Q Consensus 302 i~~~~~viv~apTGSGKT~~~~~~lle~~~~~-----~~~il~~~P 342 (800)
+..+..+.|+||+|||||+.+.+++....... +++++|+.-
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 44578999999999999999988887753321 246777653
No 479
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=90.05 E-value=0.48 Score=48.22 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=35.9
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
..+.|...+..+....+.+.+++++||.= ..++......+...+.......-+|+.|-.+
T Consensus 125 ~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~tiii~th~~ 184 (207)
T cd03369 125 NLSQGQRQLLCLARALLKRPRVLVLDEAT-ASIDYATDALIQKTIREEFTNSTILTIAHRL 184 (207)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 34556655555555567788999999987 5666655444444444333345556555543
No 480
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.03 E-value=1.5 Score=45.42 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=36.9
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcC--CCceEEEeccC
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR--PDLRLIVTSAT 443 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~--~~~kiI~lSAT 443 (800)
.-.+.|...+..+....+.+.+++++||.. ..++.+....+.+.+.... ....+|+.|--
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 129 SQLSGGQQQRVAIARALVNEPKVLLLDEPL-GALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 345667666666666677889999999999 5777665444433333221 13455555543
No 481
>PRK13695 putative NTPase; Provisional
Probab=89.98 E-value=1.5 Score=43.26 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=16.6
Q ss_pred eEEEEccCCCchHHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQYL 326 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~l 326 (800)
.++++|+.|+||||.+-..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886543
No 482
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=89.98 E-value=1.6 Score=47.52 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=27.9
Q ss_pred cCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEec
Q 003721 396 IDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTS 441 (800)
Q Consensus 396 ~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lS 441 (800)
..+....+.++|||+|| .++......+++.+-.-.++..+|+.+
T Consensus 87 ~~p~~~~~kv~iI~~ad--~m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 87 KKPYEGDKKVIIIYNSE--KMTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCcccCCceEEEEechh--hcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 45667899999999999 344445556666665433344444433
No 483
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=89.97 E-value=1 Score=53.51 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=39.3
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
.+.|...|..+....+++.+++|+||+= -.+|.+....+.+.+....++..+|+.|--+
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpt-s~lD~~~~~~i~~~l~~~~~~~t~IiitH~~ 535 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEAT-SALDAESEQLVQQALETLMKGRTTLIIAHRL 535 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcc-cccCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 3456666666666677888999999987 4667666555555555555566666666554
No 484
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=89.94 E-value=1.3 Score=45.73 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=37.2
Q ss_pred EechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccCC
Q 003721 384 YMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATL 444 (800)
Q Consensus 384 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSATl 444 (800)
-.+.|...+..+....+.+.+++|+||-= ..++......+...+.....+..+|+.|-.+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 209 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEAT-SALDAESEQQVQQALYDWPERRTVLVIAHRL 209 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 34566666666666677889999999987 5677665444444444333344455555443
No 485
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.93 E-value=0.75 Score=46.02 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=35.7
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhcc---------CCCeEEEecchHHHHHHHHHHHHHHh
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYT---------TKGKIGCTQPRRVAATSVAKRVAEEF 358 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~---------~~~~il~~~P~r~la~qva~rv~~~~ 358 (800)
..+..+++.||+|+|||+.+.+.+...... .+++|+++..-.. ..++.+|+....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 367899999999999999988888765431 3557888765443 445566665544
No 486
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=1.7 Score=47.48 Aligned_cols=40 Identities=35% Similarity=0.548 Sum_probs=26.9
Q ss_pred HHHHHHhc--CCchHHHHHHHHH--HHcCCeEEEEccCCCchHHHH
Q 003721 281 SIQEQRRS--LPIFKLKNELIQA--VHDNQVLILIGETGSGKTTQL 322 (800)
Q Consensus 281 ~~~~~r~~--lPi~~~Q~~~i~~--i~~~~~viv~apTGSGKT~~~ 322 (800)
.+++.|+. ||+ .+-++++. |..-+-|++.||+|+|||+.+
T Consensus 159 Qi~EirE~VELPL--~~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 159 QIQEIREVVELPL--KNPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred HHHHHHHHhcccc--cCHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 34444543 555 34455555 456678999999999999655
No 487
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.90 E-value=0.28 Score=54.04 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEecc
Q 003721 389 MLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSA 442 (800)
Q Consensus 389 ~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSA 442 (800)
.+.+.+...+....+.++|||+|| .++......+||.+-.-.++.-+|++|.
T Consensus 95 ~l~~~~~~~~~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 95 EVTEKLYEHARLGGAKVVWLPDAA--LLTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred HHHHHHhhccccCCceEEEEcchH--hhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 344555556677899999999999 4555566677777655333444444443
No 488
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.90 E-value=0.24 Score=50.03 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=33.3
Q ss_pred echHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHHh-cCCCceEEEecc
Q 003721 385 MTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSA 442 (800)
Q Consensus 385 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI~lSA 442 (800)
.+.|...+.......+.+.+++++||.- ..++......+.+.+.. ...+.-+|+.|-
T Consensus 124 LS~G~~~rl~la~al~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 124 LSSGMQKIVAIARLIACQSDLWLLDEVE-TNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4555555555555567788999999998 57776654444443321 123344555543
No 489
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.87 E-value=0.34 Score=44.46 Aligned_cols=19 Identities=42% Similarity=0.676 Sum_probs=15.8
Q ss_pred eEEEEccCCCchHHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQY 325 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~ 325 (800)
.++|+|++||||||.+-..
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4789999999999887543
No 490
>PHA00350 putative assembly protein
Probab=89.82 E-value=1.6 Score=49.00 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=22.0
Q ss_pred eEEEEccCCCchHHHHHHHHHHhhccCCCeE
Q 003721 307 VLILIGETGSGKTTQLAQYLAEAGYTTKGKI 337 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~~lle~~~~~~~~i 337 (800)
..++.|..|||||.-+....+...+..+.+|
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V 33 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKV 33 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEE
Confidence 4689999999999888875444435545443
No 491
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.81 E-value=1.9 Score=44.93 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=22.7
Q ss_pred HHHHHcCC-eEEEEccCCCchHHHHHHHHHHh
Q 003721 299 IQAVHDNQ-VLILIGETGSGKTTQLAQYLAEA 329 (800)
Q Consensus 299 i~~i~~~~-~viv~apTGSGKT~~~~~~lle~ 329 (800)
-..+..++ .+.++|+-|||||+..= .+.+.
T Consensus 44 ~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 44 HAAIADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HHHHhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 34467777 89999999999997765 44444
No 492
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.80 E-value=0.37 Score=49.13 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=30.4
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecch
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPR 343 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~ 343 (800)
..++.+.|.||+|||||+.+.+++.+.. ..+.+++++.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~-~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA-RQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECC
Confidence 3567899999999999999888777653 345677766553
No 493
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.77 E-value=0.25 Score=50.27 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=30.2
Q ss_pred EEechHHHHHHHhcCCCCCCCceEEEeccCcCCCCcchHHHHHHHHH
Q 003721 383 KYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLV 429 (800)
Q Consensus 383 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~~~~d~l~~~lk~l~ 429 (800)
.-.+.|...+..+....+.+..++++||-= ..++......+++.+.
T Consensus 117 ~~LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 117 RGISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIR 162 (202)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHH
Confidence 345667666666666677888999999976 5666654444444333
No 494
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.76 E-value=1.3 Score=50.72 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=37.1
Q ss_pred HHHHHHcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEecchHHHHHHHHHHH
Q 003721 298 LIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRV 354 (800)
Q Consensus 298 ~i~~i~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~~P~r~la~qva~rv 354 (800)
++.-+..+..++|.|+||+|||+.+.+.+.......+..++++. .-.-..++..|+
T Consensus 188 ~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~S-lEm~~~~i~~R~ 243 (434)
T TIGR00665 188 LTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFS-LEMSAEQLAMRM 243 (434)
T ss_pred hcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEe-CcCCHHHHHHHH
Confidence 33345677899999999999999988888775544455666653 222334444444
No 495
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=89.75 E-value=1.7 Score=44.58 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=28.8
Q ss_pred CCCCceEEEeccCcCCCCcchHHHHHHHHHhcCCCceEEEeccC
Q 003721 400 LSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSAT 443 (800)
Q Consensus 400 l~~~~~IIiDEaHer~~~~d~l~~~lk~l~~~~~~~kiI~lSAT 443 (800)
.....++|+||++ -.+|......+...+.....+.|+|++|-.
T Consensus 156 ~~~~p~~ilDEvd-~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 156 YKPSPFLILDEVD-AALDEQNRKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp CS--SEEEEESTT-TTS-HHHHHHHHHHHHHHTTTSEEEEE-S-
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 3556799999999 567776666666666666677899998754
No 496
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.75 E-value=0.39 Score=49.30 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=29.9
Q ss_pred HcCCeEEEEccCCCchHHHHHHHHHHhhccCCCeEEEe
Q 003721 303 HDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCT 340 (800)
Q Consensus 303 ~~~~~viv~apTGSGKT~~~~~~lle~~~~~~~~il~~ 340 (800)
..+..++|.|++|||||+.+.+++.+.. ..+++++++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~-~~g~~v~yi 53 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA-GQGKKVAYI 53 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEE
Confidence 4577899999999999999988887753 446678776
No 497
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=89.72 E-value=1.9 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCeEEEEccCCCchHHHHHHHHHHh
Q 003721 296 NELIQAVHDNQVLILIGETGSGKTTQLAQYLAEA 329 (800)
Q Consensus 296 ~~~i~~i~~~~~viv~apTGSGKT~~~~~~lle~ 329 (800)
+++-.+...+..|+|.|+||||||+.+ .++...
T Consensus 210 ~~~~~~a~~~~pvli~Ge~GtGK~~lA-~~ih~~ 242 (534)
T TIGR01817 210 DQARVVARSNSTVLLRGESGTGKELIA-KAIHYL 242 (534)
T ss_pred HHHHHHhCcCCCEEEECCCCccHHHHH-HHHHHh
Confidence 334444556778999999999999776 455544
No 498
>PTZ00035 Rad51 protein; Provisional
Probab=89.71 E-value=0.86 Score=50.29 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=27.7
Q ss_pred cCCeEEEEccCCCchHHHHHHHHHHhhcc-----CCCeEEEec
Q 003721 304 DNQVLILIGETGSGKTTQLAQYLAEAGYT-----TKGKIGCTQ 341 (800)
Q Consensus 304 ~~~~viv~apTGSGKT~~~~~~lle~~~~-----~~~~il~~~ 341 (800)
.+..+.|.||.|||||+...+++....+. .+++++|+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 46789999999999998887776554321 355777654
No 499
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.69 E-value=1.1 Score=54.78 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.6
Q ss_pred eEEEEccCCCchHHHHHH
Q 003721 307 VLILIGETGSGKTTQLAQ 324 (800)
Q Consensus 307 ~viv~apTGSGKT~~~~~ 324 (800)
.++++||||+|||+.+-.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~ 507 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999988753
No 500
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.66 E-value=0.73 Score=53.78 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=61.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCeEEEEEcCCCCHHHHHhhcCcCCCCCceEEEeccchhhcCCCCCee
Q 003721 497 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIF 576 (800)
Q Consensus 497 ~g~iLVF~~s~~~i~~l~~~L~~~l~~~~~~~~~~~v~~lh~~l~~~~R~~i~~~f~~g~~kVLVAT~iae~GIdip~v~ 576 (800)
++++||.+|+..-+..+++.|.+.+ +..+..+||+++..+|.+++....+|..+|||+|..+-. ..++++.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~ 95 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLG 95 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCC
Confidence 5679999999999999888887764 345788999999999999998888999999999975432 4567777
Q ss_pred EEE
Q 003721 577 YVI 579 (800)
Q Consensus 577 ~VI 579 (800)
+||
T Consensus 96 lII 98 (505)
T TIGR00595 96 LII 98 (505)
T ss_pred EEE
Confidence 766
Done!