Query 003722
Match_columns 800
No_of_seqs 240 out of 861
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1060 Vesicle coat complex A 100.0 1E-127 3E-132 1080.0 49.7 497 1-583 132-629 (968)
2 PTZ00429 beta-adaptin; Provisi 100.0 8E-81 1.7E-85 735.6 41.2 448 1-570 129-596 (746)
3 KOG1061 Vesicle coat complex A 100.0 4.4E-70 9.4E-75 621.5 29.1 445 1-568 110-574 (734)
4 PF01602 Adaptin_N: Adaptin N 100.0 2.2E-56 4.8E-61 516.0 27.6 413 1-510 103-524 (526)
5 COG5096 Vesicle coat complex, 100.0 8.7E-46 1.9E-50 430.1 29.1 410 1-511 116-563 (757)
6 KOG1062 Vesicle coat complex A 100.0 1.8E-38 4E-43 361.5 42.1 453 1-573 131-622 (866)
7 KOG1077 Vesicle coat complex A 100.0 7.6E-38 1.6E-42 350.4 29.7 432 4-546 138-605 (938)
8 KOG1058 Vesicle coat complex C 100.0 7.1E-28 1.5E-32 272.6 21.0 326 1-429 123-464 (948)
9 KOG1059 Vesicle coat complex A 99.9 1.1E-25 2.4E-30 254.2 31.0 407 1-509 133-576 (877)
10 PF14796 AP3B1_C: Clathrin-ada 99.8 2.2E-21 4.8E-26 186.6 8.0 100 685-788 1-115 (145)
11 KOG1078 Vesicle coat complex C 99.8 1.4E-18 3.1E-23 199.1 30.0 410 12-509 100-531 (865)
12 COG5240 SEC21 Vesicle coat com 99.8 3.5E-17 7.6E-22 181.8 33.8 281 214-511 270-556 (898)
13 PF01602 Adaptin_N: Adaptin N 98.8 2.4E-07 5.2E-12 107.8 22.3 95 16-113 46-140 (526)
14 PTZ00429 beta-adaptin; Provisi 98.3 0.0013 2.9E-08 79.9 33.3 302 7-409 100-416 (746)
15 KOG1060 Vesicle coat complex A 98.2 0.0012 2.5E-08 78.1 29.8 56 721-782 769-824 (968)
16 PF12717 Cnd1: non-SMC mitotic 98.2 4.6E-06 1E-10 84.2 8.9 112 3-115 16-138 (178)
17 PRK13800 putative oxidoreducta 98.2 0.00015 3.2E-09 90.6 23.4 226 13-360 622-848 (897)
18 PRK09687 putative lyase; Provi 98.1 0.00032 7E-09 76.0 20.4 235 13-360 24-262 (280)
19 PRK13800 putative oxidoreducta 97.8 0.0015 3.2E-08 81.8 21.9 229 11-360 651-880 (897)
20 PRK09687 putative lyase; Provi 97.8 0.0014 3.1E-08 71.1 18.8 223 11-338 53-278 (280)
21 PF10508 Proteasom_PSMB: Prote 97.4 0.05 1.1E-06 63.9 26.0 111 6-116 71-189 (503)
22 KOG2171 Karyopherin (importin) 97.3 0.16 3.5E-06 63.1 29.8 406 20-513 88-552 (1075)
23 KOG2023 Nuclear transport rece 97.3 0.099 2.2E-06 61.5 25.9 413 4-510 385-854 (885)
24 KOG1062 Vesicle coat complex A 97.2 0.061 1.3E-06 64.3 23.2 50 731-782 747-797 (866)
25 PLN03200 cellulose synthase-in 97.2 0.09 2E-06 69.8 26.8 355 13-471 447-863 (2102)
26 PLN03200 cellulose synthase-in 97.2 0.21 4.6E-06 66.4 29.9 398 14-508 364-858 (2102)
27 KOG1059 Vesicle coat complex A 97.0 0.11 2.4E-06 61.6 22.7 240 8-360 105-346 (877)
28 KOG1058 Vesicle coat complex C 96.9 0.051 1.1E-06 64.5 19.0 64 12-78 99-162 (948)
29 cd00020 ARM Armadillo/beta-cat 96.8 0.0035 7.6E-08 57.3 7.2 102 13-114 8-118 (120)
30 PF14764 SPG48: AP-5 complex s 96.8 0.039 8.4E-07 63.2 16.8 125 385-511 292-447 (459)
31 KOG2171 Karyopherin (importin) 96.8 0.064 1.4E-06 66.5 19.6 238 7-359 343-611 (1075)
32 COG5096 Vesicle coat complex, 96.7 0.18 3.8E-06 61.3 21.6 97 12-111 92-190 (757)
33 PF13646 HEAT_2: HEAT repeats; 96.6 0.0082 1.8E-07 52.5 7.9 84 15-111 2-87 (88)
34 KOG0212 Uncharacterized conser 96.6 1 2.2E-05 52.5 26.0 289 10-390 82-406 (675)
35 KOG2023 Nuclear transport rece 96.5 0.3 6.5E-06 57.6 21.5 74 8-81 86-159 (885)
36 KOG0213 Splicing factor 3b, su 96.5 2.7 5.8E-05 50.6 28.8 455 11-511 552-1066(1172)
37 PF12717 Cnd1: non-SMC mitotic 96.3 0.072 1.6E-06 53.8 13.4 98 256-353 2-104 (178)
38 KOG0413 Uncharacterized conser 96.3 0.33 7.1E-06 59.2 20.3 170 326-506 877-1069(1529)
39 PF02985 HEAT: HEAT repeat; I 96.2 0.0052 1.1E-07 44.0 3.3 29 13-41 1-29 (31)
40 PF05804 KAP: Kinesin-associat 96.0 2.5 5.3E-05 51.7 26.4 360 52-510 252-649 (708)
41 KOG0213 Splicing factor 3b, su 96.0 0.95 2.1E-05 54.2 21.7 327 3-505 790-1137(1172)
42 PF04826 Arm_2: Armadillo-like 96.0 0.29 6.4E-06 52.5 16.7 170 19-270 19-204 (254)
43 PF05804 KAP: Kinesin-associat 95.8 1 2.3E-05 54.9 22.1 289 7-393 289-610 (708)
44 PF13513 HEAT_EZ: HEAT-like re 95.8 0.016 3.4E-07 46.7 4.7 52 26-77 1-55 (55)
45 KOG1824 TATA-binding protein-i 95.7 0.48 1E-05 58.0 18.4 173 311-495 129-313 (1233)
46 KOG0166 Karyopherin (importin) 95.6 0.63 1.4E-05 54.3 18.7 241 19-343 116-394 (514)
47 KOG1020 Sister chromatid cohes 95.3 14 0.00031 47.9 29.6 106 255-360 1049-1171(1692)
48 TIGR02270 conserved hypothetic 95.2 1 2.2E-05 51.6 18.5 225 11-360 53-279 (410)
49 PF12755 Vac14_Fab1_bd: Vacuol 95.1 0.052 1.1E-06 49.7 6.1 66 5-70 20-88 (97)
50 KOG2259 Uncharacterized conser 94.9 7.7 0.00017 46.4 24.3 68 47-115 195-262 (823)
51 COG5181 HSH155 U2 snRNP splice 94.9 5.1 0.00011 47.4 22.4 460 9-508 355-868 (975)
52 KOG2259 Uncharacterized conser 94.8 4.7 0.0001 48.1 22.1 90 8-99 194-293 (823)
53 KOG0212 Uncharacterized conser 94.7 12 0.00025 44.2 25.5 106 396-506 334-440 (675)
54 cd00256 VATPase_H VATPase_H, r 94.7 7 0.00015 45.2 23.1 245 206-469 141-426 (429)
55 PF10508 Proteasom_PSMB: Prote 94.6 7.1 0.00015 46.1 23.9 291 208-508 77-418 (503)
56 KOG1241 Karyopherin (importin) 94.4 5.2 0.00011 48.4 21.5 356 7-470 318-713 (859)
57 KOG1242 Protein containing ada 94.3 2.5 5.3E-05 50.0 18.6 111 5-116 210-324 (569)
58 PF12719 Cnd3: Nuclear condens 94.3 1.5 3.3E-05 47.9 16.3 123 313-474 26-149 (298)
59 PF12348 CLASP_N: CLASP N term 94.2 0.16 3.4E-06 52.8 8.2 145 206-352 51-216 (228)
60 COG5240 SEC21 Vesicle coat com 94.1 7.8 0.00017 45.7 21.5 140 215-357 347-494 (898)
61 KOG1241 Karyopherin (importin) 94.0 9.2 0.0002 46.4 22.4 186 239-428 592-811 (859)
62 KOG1077 Vesicle coat complex A 93.8 20 0.00043 43.4 32.6 277 7-361 106-415 (938)
63 KOG1824 TATA-binding protein-i 93.5 12 0.00026 46.5 22.6 240 11-360 46-308 (1233)
64 TIGR02270 conserved hypothetic 93.1 7.4 0.00016 44.8 19.7 210 12-341 86-295 (410)
65 KOG1078 Vesicle coat complex C 92.8 13 0.00027 45.4 21.2 181 215-409 326-514 (865)
66 KOG1525 Sister chromatid cohes 92.5 7.2 0.00016 50.5 20.0 199 259-472 117-333 (1266)
67 PF13646 HEAT_2: HEAT repeats; 92.5 0.7 1.5E-05 40.1 8.2 84 400-502 1-84 (88)
68 KOG1525 Sister chromatid cohes 91.6 7.4 0.00016 50.4 18.7 209 293-511 237-473 (1266)
69 cd00020 ARM Armadillo/beta-cat 91.4 1.1 2.3E-05 40.7 8.4 101 314-426 8-118 (120)
70 PF10363 DUF2435: Protein of u 89.7 1.7 3.7E-05 39.4 8.0 63 16-78 7-71 (92)
71 COG5181 HSH155 U2 snRNP splice 89.7 53 0.0012 39.4 22.5 75 4-78 596-674 (975)
72 KOG0211 Protein phosphatase 2A 89.5 5 0.00011 49.4 14.1 254 9-343 395-665 (759)
73 PF05918 API5: Apoptosis inhib 89.2 21 0.00046 42.5 18.6 78 18-97 29-106 (556)
74 PF12348 CLASP_N: CLASP N term 89.0 14 0.00031 38.1 15.5 126 376-510 68-206 (228)
75 PF13513 HEAT_EZ: HEAT-like re 88.2 0.42 9E-06 38.4 2.7 32 8-39 24-55 (55)
76 KOG1991 Nuclear transport rece 87.5 81 0.0017 39.8 22.1 176 260-448 390-594 (1010)
77 COG1413 FOG: HEAT repeat [Ener 87.5 20 0.00044 39.3 16.4 92 11-115 42-134 (335)
78 PF12719 Cnd3: Nuclear condens 87.3 20 0.00044 39.1 16.0 130 207-358 25-160 (298)
79 KOG0166 Karyopherin (importin) 86.7 8.4 0.00018 45.3 13.0 197 218-427 120-350 (514)
80 PF02854 MIF4G: MIF4G domain; 86.6 27 0.00058 34.8 15.5 151 298-468 3-163 (209)
81 KOG1240 Protein kinase contain 86.4 36 0.00078 43.6 18.6 67 9-79 423-491 (1431)
82 COG5098 Chromosome condensatio 85.0 1.9 4.2E-05 51.3 6.7 69 10-78 344-414 (1128)
83 KOG2160 Armadillo/beta-catenin 84.0 45 0.00097 37.4 16.5 167 294-471 99-285 (342)
84 PF12755 Vac14_Fab1_bd: Vacuol 84.0 5.6 0.00012 36.4 8.1 73 436-509 24-96 (97)
85 PF12765 Cohesin_HEAT: HEAT re 83.7 1 2.2E-05 34.8 2.6 25 11-35 17-41 (42)
86 PF05918 API5: Apoptosis inhib 83.6 20 0.00044 42.7 14.4 88 318-420 64-154 (556)
87 PF08167 RIX1: rRNA processing 83.6 13 0.00028 37.3 11.2 125 238-399 20-152 (165)
88 COG1413 FOG: HEAT repeat [Ener 83.0 26 0.00055 38.6 14.5 65 11-81 73-137 (335)
89 smart00809 Alpha_adaptinC2 Ada 82.9 2.7 5.9E-05 38.1 5.7 40 738-782 3-42 (104)
90 KOG1240 Protein kinase contain 82.4 9.5 0.00021 48.4 11.4 110 7-116 573-685 (1431)
91 KOG1242 Protein containing ada 81.8 1.2E+02 0.0027 36.2 27.2 391 14-469 20-445 (569)
92 KOG1061 Vesicle coat complex A 81.2 37 0.0008 41.5 15.4 184 232-427 38-230 (734)
93 COG5215 KAP95 Karyopherin (imp 81.2 1.3E+02 0.0028 36.0 22.6 254 221-504 463-753 (858)
94 PF12530 DUF3730: Protein of u 81.0 55 0.0012 34.6 15.5 125 216-342 9-151 (234)
95 COG5218 YCG1 Chromosome conden 80.9 21 0.00046 42.4 12.8 158 25-267 24-195 (885)
96 COG5218 YCG1 Chromosome conden 79.0 1.1E+02 0.0023 36.8 17.5 63 9-72 129-192 (885)
97 KOG2038 CAATT-binding transcri 78.0 1.7E+02 0.0036 36.3 19.2 68 10-78 302-369 (988)
98 KOG0915 Uncharacterized conser 77.7 1.9E+02 0.0042 38.4 20.6 79 25-103 970-1054(1702)
99 PF02883 Alpha_adaptinC2: Adap 77.1 4.9 0.00011 37.3 5.5 40 739-781 8-47 (115)
100 PF01603 B56: Protein phosphat 76.8 65 0.0014 37.1 15.5 125 377-505 191-321 (409)
101 PF08713 DNA_alkylation: DNA a 75.9 3.7 8.1E-05 42.0 4.7 70 11-83 119-188 (213)
102 KOG1020 Sister chromatid cohes 75.5 40 0.00086 44.2 13.9 150 310-473 813-965 (1692)
103 KOG0414 Chromosome condensatio 75.1 9.6 0.00021 48.3 8.5 110 4-116 990-1102(1251)
104 KOG2081 Nuclear transport regu 74.8 29 0.00062 41.0 11.7 111 328-450 367-479 (559)
105 KOG4224 Armadillo repeat prote 73.3 94 0.002 35.2 14.6 247 17-345 132-408 (550)
106 PF02985 HEAT: HEAT repeat; I 73.1 3.8 8.3E-05 29.1 2.8 29 51-79 1-29 (31)
107 smart00638 LPD_N Lipoprotein N 71.6 2.1E+02 0.0045 34.2 18.7 193 292-511 340-544 (574)
108 smart00543 MIF4G Middle domain 71.4 1.1E+02 0.0024 30.3 15.6 51 301-353 7-57 (200)
109 PF10363 DUF2435: Protein of u 70.3 38 0.00081 30.8 9.2 54 293-346 18-76 (92)
110 KOG2025 Chromosome condensatio 69.8 2.8E+02 0.0061 34.2 26.8 166 24-274 18-196 (892)
111 PF04826 Arm_2: Armadillo-like 69.3 33 0.00071 37.0 10.1 102 14-115 56-162 (254)
112 PF03224 V-ATPase_H_N: V-ATPas 69.1 45 0.00098 36.6 11.5 64 51-116 60-134 (312)
113 smart00638 LPD_N Lipoprotein N 68.9 9.9 0.00022 45.4 6.8 78 1-81 470-547 (574)
114 PF14631 FancD2: Fanconi anaem 68.7 65 0.0014 42.9 14.3 135 207-343 434-588 (1426)
115 COG5116 RPN2 26S proteasome re 68.5 19 0.00041 42.6 8.3 58 410-472 597-654 (926)
116 KOG2025 Chromosome condensatio 68.3 1E+02 0.0023 37.7 14.4 131 340-499 51-182 (892)
117 PF14500 MMS19_N: Dos2-interac 68.2 1.8E+02 0.0039 31.4 19.7 102 245-346 125-241 (262)
118 KOG4224 Armadillo repeat prote 68.2 56 0.0012 36.9 11.5 249 14-343 169-447 (550)
119 PF06685 DUF1186: Protein of u 67.3 11 0.00025 40.4 6.0 76 14-90 113-195 (249)
120 KOG2160 Armadillo/beta-catenin 67.2 22 0.00049 39.7 8.4 96 20-116 132-240 (342)
121 cd03568 VHS_STAM VHS domain fa 66.7 67 0.0015 31.5 10.9 108 209-346 5-114 (144)
122 KOG1932 TATA binding protein a 66.3 1.2E+02 0.0026 38.9 15.0 254 202-502 628-925 (1180)
123 cd06561 AlkD_like A new struct 65.7 11 0.00023 38.2 5.3 64 15-80 108-171 (197)
124 KOG0414 Chromosome condensatio 65.5 18 0.0004 45.9 8.0 163 238-447 914-1083(1251)
125 KOG0211 Protein phosphatase 2A 64.3 3.7E+02 0.0081 33.7 25.2 66 13-78 238-304 (759)
126 PF08167 RIX1: rRNA processing 63.4 70 0.0015 31.9 10.6 43 241-284 114-156 (165)
127 KOG1943 Beta-tubulin folding c 63.3 4.3E+02 0.0094 34.1 25.8 107 7-113 419-551 (1133)
128 KOG2274 Predicted importin 9 [ 63.3 1.6E+02 0.0035 37.0 15.0 61 17-78 95-156 (1005)
129 KOG2956 CLIP-associating prote 62.3 1.5E+02 0.0033 34.6 13.9 80 257-336 302-394 (516)
130 KOG1949 Uncharacterized conser 61.6 31 0.00068 41.8 8.6 77 11-87 173-257 (1005)
131 PF11701 UNC45-central: Myosin 61.1 22 0.00047 35.3 6.4 93 23-115 16-116 (157)
132 PHA02664 hypothetical protein; 60.4 6.8 0.00015 42.8 2.8 22 337-358 245-266 (534)
133 KOG2140 Uncharacterized conser 60.4 1.1E+02 0.0023 36.3 12.3 115 297-420 166-297 (739)
134 PF04078 Rcd1: Cell differenti 59.6 56 0.0012 35.3 9.4 185 213-420 29-227 (262)
135 PF14500 MMS19_N: Dos2-interac 58.9 1.6E+02 0.0034 31.9 12.9 68 315-391 1-70 (262)
136 PF05004 IFRD: Interferon-rela 56.9 3.1E+02 0.0067 30.3 18.7 88 14-101 45-143 (309)
137 KOG1991 Nuclear transport rece 56.8 5.3E+02 0.011 33.0 31.7 98 413-511 476-601 (1010)
138 KOG2032 Uncharacterized conser 56.7 4E+02 0.0087 31.5 20.2 108 8-115 254-373 (533)
139 KOG4653 Uncharacterized conser 56.1 5.2E+02 0.011 32.7 17.7 179 313-511 727-919 (982)
140 KOG3723 PH domain protein Melt 55.1 72 0.0016 37.9 9.8 72 388-463 226-297 (851)
141 PF01347 Vitellogenin_N: Lipop 55.1 63 0.0014 38.9 10.2 194 291-511 377-588 (618)
142 KOG2038 CAATT-binding transcri 54.9 1.9E+02 0.004 35.9 13.4 139 335-505 215-365 (988)
143 cd03561 VHS VHS domain family; 54.5 1.5E+02 0.0033 28.4 10.8 69 211-281 7-76 (133)
144 KOG1949 Uncharacterized conser 54.3 39 0.00084 41.1 7.7 105 9-115 217-330 (1005)
145 PF05536 Neurochondrin: Neuroc 54.3 4.6E+02 0.0099 31.5 18.4 178 290-508 69-259 (543)
146 PF06685 DUF1186: Protein of u 54.1 1.6E+02 0.0036 31.6 11.9 89 301-404 104-194 (249)
147 KOG2956 CLIP-associating prote 51.5 13 0.00028 43.0 3.3 35 8-42 444-478 (516)
148 PF10274 ParcG: Parkin co-regu 51.5 69 0.0015 32.9 8.2 72 24-96 51-129 (183)
149 KOG0567 HEAT repeat-containing 51.4 25 0.00054 38.0 5.2 25 14-38 189-213 (289)
150 PF11698 V-ATPase_H_C: V-ATPas 51.3 28 0.00061 33.2 5.0 77 393-469 38-116 (119)
151 PF13981 SopA: SopA-like centr 50.6 59 0.0013 31.7 7.3 107 398-508 6-121 (135)
152 smart00567 EZ_HEAT E-Z type HE 50.6 22 0.00047 24.8 3.2 14 26-39 1-14 (30)
153 PF10521 DUF2454: Protein of u 49.4 88 0.0019 34.0 9.3 73 7-79 114-203 (282)
154 KOG1248 Uncharacterized conser 49.1 7.4E+02 0.016 32.4 23.9 118 225-345 593-729 (1176)
155 KOG1943 Beta-tubulin folding c 48.7 51 0.0011 41.8 7.9 76 5-80 334-410 (1133)
156 cd03569 VHS_Hrs_Vps27p VHS dom 47.7 1.5E+02 0.0033 29.0 9.7 72 208-281 8-80 (142)
157 cd03567 VHS_GGA VHS domain fam 46.6 2.6E+02 0.0056 27.4 11.1 72 208-281 5-77 (139)
158 KOG0946 ER-Golgi vesicle-tethe 46.3 6.6E+02 0.014 31.6 16.2 128 244-395 62-200 (970)
159 KOG1820 Microtubule-associated 46.0 2.2E+02 0.0048 35.8 12.8 71 8-78 249-323 (815)
160 PF14664 RICTOR_N: Rapamycin-i 45.8 1.5E+02 0.0032 33.9 10.6 17 252-268 35-51 (371)
161 PF00514 Arm: Armadillo/beta-c 44.5 32 0.00068 25.8 3.5 27 13-39 13-39 (41)
162 PF14664 RICTOR_N: Rapamycin-i 44.3 5.3E+02 0.012 29.4 16.1 220 205-472 22-273 (371)
163 cd00197 VHS_ENTH_ANTH VHS, ENT 43.4 86 0.0019 29.0 7.0 96 209-306 5-114 (115)
164 PF00790 VHS: VHS domain; Int 43.1 69 0.0015 31.0 6.5 73 207-281 8-81 (140)
165 PF12830 Nipped-B_C: Sister ch 42.9 75 0.0016 32.4 7.1 78 8-89 4-84 (187)
166 KOG1248 Uncharacterized conser 42.9 9.1E+02 0.02 31.7 24.2 64 211-274 96-170 (1176)
167 PF10274 ParcG: Parkin co-regu 42.4 40 0.00087 34.6 4.9 54 5-59 73-126 (183)
168 PF11935 DUF3453: Domain of un 42.1 4.5E+02 0.0097 27.9 13.2 111 241-360 41-163 (239)
169 KOG2973 Uncharacterized conser 41.8 88 0.0019 34.8 7.5 64 14-80 5-72 (353)
170 COG5593 Nucleic-acid-binding p 41.5 3E+02 0.0065 32.8 12.0 134 226-360 104-275 (821)
171 KOG2274 Predicted importin 9 [ 41.2 8.7E+02 0.019 31.0 27.3 108 8-115 445-558 (1005)
172 PF12460 MMS19_C: RNAPII trans 39.3 6.4E+02 0.014 28.9 22.3 216 257-488 164-414 (415)
173 PF13251 DUF4042: Domain of un 39.2 1.6E+02 0.0036 30.1 8.8 51 258-308 2-70 (182)
174 KOG2051 Nonsense-mediated mRNA 39.2 4.4E+02 0.0094 34.0 13.6 94 413-508 519-612 (1128)
175 PF14663 RasGEF_N_2: Rapamycin 38.8 35 0.00076 32.1 3.6 33 49-81 7-39 (115)
176 PF04388 Hamartin: Hamartin pr 38.7 3.2E+02 0.0068 33.8 12.6 148 245-410 6-160 (668)
177 KOG1189 Global transcriptional 37.6 29 0.00064 42.3 3.4 12 51-62 180-191 (960)
178 cd07064 AlkD_like_1 A new stru 36.9 74 0.0016 33.1 6.0 63 14-79 117-179 (208)
179 KOG1293 Proteins containing ar 36.8 1.3E+02 0.0029 36.3 8.6 103 13-115 420-532 (678)
180 COG5098 Chromosome condensatio 36.7 6E+02 0.013 31.5 13.7 167 293-472 237-419 (1128)
181 KOG1517 Guanine nucleotide bin 36.7 66 0.0014 40.9 6.2 66 13-78 601-670 (1387)
182 PF05110 AF-4: AF-4 proto-onco 36.6 43 0.00094 43.5 5.0 10 686-695 483-492 (1191)
183 KOG0168 Putative ubiquitin fus 36.4 5.9E+02 0.013 32.3 13.8 91 326-428 225-323 (1051)
184 PF08631 SPO22: Meiosis protei 36.1 5.8E+02 0.013 27.4 17.8 148 207-357 13-185 (278)
185 PF14797 SEEEED: Serine-rich r 35.8 66 0.0014 30.6 4.8 11 603-613 6-16 (130)
186 KOG4653 Uncharacterized conser 35.6 9.3E+02 0.02 30.6 15.4 169 289-467 738-917 (982)
187 cd06561 AlkD_like A new struct 35.3 67 0.0015 32.3 5.4 35 10-44 139-173 (197)
188 KOG2011 Sister chromatid cohes 35.2 1.7E+02 0.0037 37.6 9.5 125 381-510 265-399 (1048)
189 PF01347 Vitellogenin_N: Lipop 34.2 22 0.00047 42.8 1.8 76 3-81 516-591 (618)
190 PF10521 DUF2454: Protein of u 34.0 2.5E+02 0.0053 30.6 9.7 121 239-359 115-270 (282)
191 PF12397 U3snoRNP10: U3 small 33.5 2E+02 0.0043 26.9 7.8 85 8-93 2-91 (121)
192 PF12765 Cohesin_HEAT: HEAT re 32.7 69 0.0015 24.7 3.7 39 35-73 2-41 (42)
193 KOG1293 Proteins containing ar 32.7 2.2E+02 0.0048 34.6 9.5 41 244-289 420-461 (678)
194 cd03565 VHS_Tom1 VHS domain fa 32.4 2.7E+02 0.0059 27.1 8.8 72 208-281 5-78 (141)
195 PF11865 DUF3385: Domain of un 32.3 2.6E+02 0.0056 27.8 8.8 36 6-44 8-43 (160)
196 KOG2062 26S proteasome regulat 32.1 40 0.00086 41.2 3.4 56 21-80 564-619 (929)
197 KOG1684 Enoyl-CoA hydratase [L 32.1 85 0.0018 35.5 5.7 65 289-360 256-321 (401)
198 PF04931 DNA_pol_phi: DNA poly 31.5 40 0.00086 42.2 3.5 9 530-538 587-595 (784)
199 KOG1822 Uncharacterized conser 31.5 1.6E+03 0.035 31.2 17.5 73 9-81 913-991 (2067)
200 KOG1832 HIV-1 Vpr-binding prot 30.8 39 0.00085 42.0 3.0 33 287-319 753-785 (1516)
201 PF09759 Atx10homo_assoc: Spin 30.6 94 0.002 28.9 4.9 62 329-397 2-66 (102)
202 KOG1992 Nuclear export recepto 29.8 1.3E+03 0.027 29.4 23.1 105 11-123 5-122 (960)
203 PF14837 INTS5_N: Integrator c 28.5 6.6E+02 0.014 26.5 11.2 47 312-358 2-52 (213)
204 KOG0930 Guanine nucleotide exc 27.9 3E+02 0.0064 30.2 8.6 63 293-357 21-85 (395)
205 COG5537 IRR1 Cohesin [Cell div 27.8 1.8E+02 0.0039 35.1 7.6 117 388-508 260-387 (740)
206 KOG2933 Uncharacterized conser 27.8 1.5E+02 0.0033 32.9 6.6 70 9-78 126-198 (334)
207 PF12074 DUF3554: Domain of un 27.5 8.7E+02 0.019 26.8 14.8 35 7-41 56-90 (339)
208 PF05327 RRN3: RNA polymerase 27.4 8E+02 0.017 29.6 13.4 55 433-487 156-212 (563)
209 PF08713 DNA_alkylation: DNA a 27.2 83 0.0018 32.0 4.5 36 9-44 152-187 (213)
210 KOG1820 Microtubule-associated 26.8 1.3E+03 0.028 29.4 15.1 185 313-510 253-443 (815)
211 PF06524 NOA36: NOA36 protein; 26.7 88 0.0019 33.7 4.4 14 557-570 227-240 (314)
212 KOG2753 Uncharacterized conser 26.4 9.8E+02 0.021 27.1 12.4 144 203-347 60-220 (378)
213 PF11864 DUF3384: Domain of un 26.0 1.1E+03 0.024 27.5 30.3 373 10-466 26-464 (464)
214 PF03130 HEAT_PBS: PBS lyase H 24.9 63 0.0014 22.3 2.1 13 28-40 1-13 (27)
215 PF12530 DUF3730: Protein of u 24.2 2.9E+02 0.0062 29.2 7.9 68 28-96 100-168 (234)
216 KOG1832 HIV-1 Vpr-binding prot 24.1 76 0.0016 39.6 3.8 8 258-265 678-685 (1516)
217 PF14837 INTS5_N: Integrator c 24.1 4.7E+02 0.01 27.6 9.2 67 242-323 25-92 (213)
218 KOG1517 Guanine nucleotide bin 23.6 1.6E+03 0.035 29.5 14.7 197 232-470 497-734 (1387)
219 PF08161 NUC173: NUC173 domain 23.5 8.4E+02 0.018 25.3 12.1 32 239-270 167-198 (198)
220 smart00288 VHS Domain present 23.3 3E+02 0.0064 26.5 7.2 70 210-281 6-76 (133)
221 PF00514 Arm: Armadillo/beta-c 23.3 1.5E+02 0.0032 22.1 4.1 27 315-341 14-40 (41)
222 PF12031 DUF3518: Domain of un 22.5 2.4E+02 0.0052 30.4 6.7 71 291-361 137-227 (257)
223 PF04821 TIMELESS: Timeless pr 22.3 7.3E+02 0.016 26.8 10.7 62 244-311 14-76 (266)
224 PF01603 B56: Protein phosphat 21.5 6.7E+02 0.015 28.9 10.8 31 480-510 340-370 (409)
225 KOG0915 Uncharacterized conser 21.5 2.2E+03 0.047 29.4 19.7 147 202-348 1271-1433(1702)
226 PF04931 DNA_pol_phi: DNA poly 21.5 77 0.0017 39.7 3.4 23 19-41 10-32 (784)
227 KOG0168 Putative ubiquitin fus 20.8 1.2E+03 0.026 29.7 12.7 137 221-361 181-346 (1051)
228 COG5110 RPN1 26S proteasome re 20.8 1.6E+03 0.034 27.4 15.7 110 1-115 439-556 (881)
229 COG5116 RPN2 26S proteasome re 20.2 80 0.0017 37.7 2.9 68 15-84 519-586 (926)
230 KOG2130 Phosphatidylserine-spe 20.2 58 0.0013 36.0 1.7 21 563-583 305-326 (407)
231 smart00185 ARM Armadillo/beta- 20.1 1.4E+02 0.003 21.5 3.3 26 53-78 15-40 (41)
No 1
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-127 Score=1080.04 Aligned_cols=497 Identities=44% Similarity=0.718 Sum_probs=452.5
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~ 80 (800)
|+|||||+|+||+++|||+|++|++|||||+||+||+|||.++| ++.++|+++|++||+|++|.|+|+|++||.||||+
T Consensus 132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 79999999999999999999999999999999999999999999 77779999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcc
Q 003722 81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD 160 (800)
Q Consensus 81 ~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (800)
+++||||||||||++|+|+|||||+++|++|+|||| ++|++|..|-.. +++.+. +
T Consensus 211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~------------------~e~n~~-----~ 265 (968)
T KOG1060|consen 211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSS------------------LEDNGR-----S 265 (968)
T ss_pred HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCccccccc------------------cccCcc-----c
Confidence 999999999999999999999999999999999985 789999743221 111110 0
Q ss_pred hhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH
Q 003722 161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240 (800)
Q Consensus 161 ~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~ 240 (800)
... ++.+ + .....+..|+||++||+++.|||||+|++||||||++|||++|+.+
T Consensus 266 ~~~-----------~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~ 319 (968)
T KOG1060|consen 266 CNL-----------KDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ 319 (968)
T ss_pred ccc-----------cccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence 000 0000 0 0112356899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 003722 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD 320 (800)
Q Consensus 241 l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~ 320 (800)
...+++||+|||++++++||++|++|..|+...|.+|.||++.||++.+||..||.+||+||+.|+|+.|+..|++||++
T Consensus 320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHH
Q 003722 321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI 400 (800)
Q Consensus 321 Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i 400 (800)
|+++.|.+|+..+|+|||+||.+.-.+.++||+||+.||++. +..||.|+|++||.+||++|..|.+++
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llssh-----------de~Vv~eaV~vIk~Llq~~p~~h~~ii 468 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSH-----------DELVVAEAVVVIKRLLQKDPAEHLEIL 468 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcc-----------cchhHHHHHHHHHHHHhhChHHHHHHH
Confidence 999999999999999999999999999999999999999852 456999999999999999999999999
Q ss_pred HHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 003722 401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480 (800)
Q Consensus 401 ~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~ 480 (800)
.+|++.++.+..|.|||+|+|++||||. .+|.++||+||+++|+|.+|..+||+|||++++|||+..+. .+++
T Consensus 469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl 541 (968)
T KOG1060|consen 469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL 541 (968)
T ss_pred HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence 9999999999999999999999999996 47999999999999999999999999999999999999876 3788
Q ss_pred HHHHHHHHHccCCChHHHhHHHHHHHHccCCcCCCCccchhhhhccCCchHHHHHhh-hccCCCCCCCCCcccccccCCc
Q 003722 481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECI-FRKQENLAASEPINDRFYLPGS 559 (800)
Q Consensus 481 L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~l-f~~~~~~~~~~~~~~r~~~lGS 559 (800)
++||||++++||.+||+|||||||+.|+.... .+. ..++.+ |+.||.+..++.+..|+|++||
T Consensus 542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~---------------~Ls-~h~~ei~l~~Kpa~~~es~f~~~~~~~gs 605 (968)
T KOG1060|consen 542 LVQYVFELARYDLSYDIRDRARFLRQLISPLE---------------ALS-KHAREIFLASKPAPVLESSFKDRHYQLGS 605 (968)
T ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHhccHH---------------HHH-HHHHHHhhccCCCccCcccccCCCcccch
Confidence 99999999999999999999999999997642 222 345555 5677777778888888999999
Q ss_pred hhHHhhccCCCCccCCCCCCCCCc
Q 003722 560 LSQIVLHAAPGYEPLPKPCSSLCD 583 (800)
Q Consensus 560 LS~~~~~~~~gy~~Lp~~~~~~~~ 583 (800)
+||+++++++||+|||+|+.+.++
T Consensus 606 lS~lLn~~a~GY~~lp~~~~~~~d 629 (968)
T KOG1060|consen 606 LSLLLNAPAPGYEPLPNWPAVAPD 629 (968)
T ss_pred HHHHhcCcCcCCccCCCccccCCC
Confidence 999999999999999999999997
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=8e-81 Score=735.62 Aligned_cols=448 Identities=24% Similarity=0.350 Sum_probs=388.4
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC-
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC- 78 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc- 78 (800)
||+||+++|+++++.+|++|+.|++|||||+||+|++|+|+++|+. ....|.+.|..||.|+||+|+++|+.+|.+|+
T Consensus 129 Ls~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999954 33457778888999999999999999999997
Q ss_pred --CCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCC
Q 003722 79 --PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (800)
Q Consensus 79 --P~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (800)
|+++.++|+++++||+.|.+++||+|+++|++|.+|.|..
T Consensus 209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-------------------------------------- 250 (746)
T PTZ00429 209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-------------------------------------- 250 (746)
T ss_pred hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--------------------------------------
Confidence 6678999999999999999999999999999999997521
Q ss_pred CCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC
Q 003722 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236 (800)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~ 236 (800)
+.+...+|+.+.|+|+|.|+||||+|+++++++.
T Consensus 251 ----------------------------------------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 251 ----------------------------------------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ----------------------------------------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 1234679999999999999999999999999887
Q ss_pred C---HH----HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCC
Q 003722 237 P---KE----DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES 309 (800)
Q Consensus 237 p---~~----~l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~ 309 (800)
+ ++ .++++..||++|+++++|+||++|++|..|++.+|.+|.+|++.|||+++||.|||.+||+||+.|||++
T Consensus 285 ~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~ 364 (746)
T PTZ00429 285 SRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPS 364 (746)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcc
Confidence 5 22 3456788999998889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHH
Q 003722 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (800)
Q Consensus 310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il 389 (800)
|+..|++||++|+.+.|.+|++++|+|||+||.|+|..++||+++|++|++.. . .++.|+|+++++|+
T Consensus 365 Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~-----------~-~~v~e~i~vik~Il 432 (746)
T PTZ00429 365 VAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRR-----------P-ELLPQVVTAAKDIV 432 (746)
T ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCC-----------c-hhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999631 2 25779999999999
Q ss_pred HhCCcchHHHHHHHHHhh--hccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHH
Q 003722 390 KQDPSCHEKVIIQLFRSL--DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 467 (800)
Q Consensus 390 ~~~P~~~~~~i~~L~~~l--d~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~ 467 (800)
|+||+.+ ++..|++.+ +.+.+|+||++++||+||||+.+ +. ++++++.++++|..|+.+||+|+||+++|+|
T Consensus 433 rkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I---~~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKlf 506 (746)
T PTZ00429 433 RKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI---EN-GKDIIQRFIDTIMEHEQRVQLAILSAAVKMF 506 (746)
T ss_pred HHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH---hh-HHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 9999864 678888765 78999999999999999999754 44 6899999999999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHH-ccCCChHHHhHHHHHHHHccCCcCCCCccchhhhhccCCchHHHHHhhhccCCCCCC
Q 003722 468 LCAKGGDMWTITRLFSYLLELA-ECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA 546 (800)
Q Consensus 468 ~~~p~e~~~~l~~L~q~vl~la-~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~~~~~ 546 (800)
+++|++.+ .+++++|+.+ +++.||||||||+|||+||+.+.. . ...+++++.++||.+.
T Consensus 507 l~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~---------------~-~~a~~iv~~~~~~i~~ 566 (746)
T PTZ00429 507 LRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGIT---------------V-AQMKKVVHGQMVPVNV 566 (746)
T ss_pred hcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCc---------------H-HHHHHHHcCCCCCCCc
Confidence 99997543 4566677544 577899999999999999987531 0 1244566677777654
Q ss_pred CCCcccc------cccCCchhHHhhccCCC
Q 003722 547 SEPINDR------FYLPGSLSQIVLHAAPG 570 (800)
Q Consensus 547 ~~~~~~r------~~~lGSLS~~~~~~~~g 570 (800)
.+...+. ...+||||.+.+++..-
T Consensus 567 ~~~~~d~~~l~~L~~~~~tlssvY~kp~~~ 596 (746)
T PTZ00429 567 DSTFSDAMTMADLKKSLNTAAIVFARPYQS 596 (746)
T ss_pred ccccCCHHHHHHHHHhcCceeeeecCCHHH
Confidence 3222211 23478888888776543
No 3
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-70 Score=621.48 Aligned_cols=445 Identities=29% Similarity=0.453 Sum_probs=394.7
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC-
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC- 78 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc- 78 (800)
|++||++.+.++...++++|++|.+|||||+||.|+.|+|+++++. +...+.+.|..|+.|.+|+|++||+.|+.||.
T Consensus 110 m~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 110 MGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred eeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999954 55678889999999999999999999999995
Q ss_pred --CC--cccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCC
Q 003722 79 --PN--NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI 154 (800)
Q Consensus 79 --P~--~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 154 (800)
|+ -+.++|+..+++++.|.+|+||||+.+|+.|++|.+..+
T Consensus 190 ~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~----------------------------------- 234 (734)
T KOG1061|consen 190 SHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS----------------------------------- 234 (734)
T ss_pred hCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-----------------------------------
Confidence 42 367889999999999999999999999999999975210
Q ss_pred CCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh
Q 003722 155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI 234 (800)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~ 234 (800)
.++..+++.+.|.|+|.|++||+++.+++++
T Consensus 235 -------------------------------------------------~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 235 -------------------------------------------------REAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred -------------------------------------------------hhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 2345688999999999999999999999998
Q ss_pred cCCH------HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCC
Q 003722 235 MSPK------EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (800)
Q Consensus 235 l~p~------~~l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e 308 (800)
+.+. ..++++..||+.++.+.++++|++|+||..+.+++|++|..+++.|||+|+||.|||..||+||+.|++.
T Consensus 266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND 345 (734)
T ss_pred HHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence 7541 3478899999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHH
Q 003722 309 SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (800)
Q Consensus 309 ~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~I 388 (800)
+|+.+|+.||.+|+.+.|.+|++++|+|||+||.+++++ ..|++.||+|++.. .+++|.|++++|++|
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~-----------~~yvvqE~~vvi~di 413 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETK-----------VDYVVQEAIVVIRDI 413 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhc-----------ccceeeehhHHHHhh
Confidence 999999999999999999999999999999999999998 99999999999853 356889999999999
Q ss_pred HHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHh
Q 003722 389 IKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 468 (800)
Q Consensus 389 l~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~ 468 (800)
+|+||..++.++..|+..++.+++|+||+++|||+|||++. +|+ ++++|+.+.++|.+|+.+||+++||+++|+|+
T Consensus 414 lRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~---i~~-a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl 489 (734)
T KOG1061|consen 414 LRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAER---IEN-ALELLESFLENFKDETAEVQLELLTAAIKLFL 489 (734)
T ss_pred hhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhc---cCc-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999975 455 67899999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHccCC-ChHHHhHHHHHHHHccCCcCCCCccchhhhhccCCchHHHHH-hhhccCCCCCC
Q 003722 469 CAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVE-CIFRKQENLAA 546 (800)
Q Consensus 469 ~~p~e~~~~l~~L~q~vl~la~~D~-n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~-~lf~~~~~~~~ 546 (800)
++|.+. +++++.+|.+|+.|. |+|+|||+.+|||+|+.+. ..|+ .+++++|....
T Consensus 490 ~~p~~t----q~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~-------------------~~a~~v~~~~kP~is~ 546 (734)
T KOG1061|consen 490 KKPTET----QELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDP-------------------LIAKDVVLAEKPLISE 546 (734)
T ss_pred cCCccH----HHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCH-------------------HHHHHHHhcCCCcccc
Confidence 999854 467888888888885 7999999999999998432 2455 44667754432
Q ss_pred C-CCccc----c-cccCCchhHHhhccC
Q 003722 547 S-EPIND----R-FYLPGSLSQIVLHAA 568 (800)
Q Consensus 547 ~-~~~~~----r-~~~lGSLS~~~~~~~ 568 (800)
. ....+ + .-.+||||.+++++-
T Consensus 547 ~~~~~~p~~le~l~~~i~tlssVY~Kp~ 574 (734)
T KOG1061|consen 547 ETDSLDPTLLEELLCDIGTLSSVYHKPP 574 (734)
T ss_pred CCCCCCchHHHHHHHhhccccceeecCh
Confidence 2 11111 2 345899999986543
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=2.2e-56 Score=516.04 Aligned_cols=413 Identities=29% Similarity=0.440 Sum_probs=364.0
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh-C
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASI-C 78 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~-L~~~l~~LL~D~dp~Vv~aAl~Af~eI-c 78 (800)
||+|+.++++|.+...|.+++.|++|||||+||+|+.|+|+.+|+. .+. +.+.+..||.|++|.|+++|+.++.+| +
T Consensus 103 l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 181 (526)
T PF01602_consen 103 LSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-VEDELIPKLKQLLSDKDPSVVSAALSLLSEIKC 181 (526)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHC
T ss_pred hhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhhccCCcchhHHHHHHHHHHHcc
Confidence 4789999999999999999999999999999999999999999943 333 888999999999999999999999999 8
Q ss_pred CCcc--cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCC
Q 003722 79 PNNF--TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (800)
Q Consensus 79 P~~~--~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (800)
+++. .++|+.+++||+++...+||+|+.+|++|.+|++... .
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-----~------------------------------- 225 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-----E------------------------------- 225 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-----H-------------------------------
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-----h-------------------------------
Confidence 8876 8999999999999999999999999999999985210 0
Q ss_pred CCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC
Q 003722 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236 (800)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~ 236 (800)
+++...+++.+.++|++.|++|+++|+++++++.
T Consensus 226 ----------------------------------------------~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 226 ----------------------------------------------DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------------------hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 0011468888999999999999999999999998
Q ss_pred CHHH-HHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC-CcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHH
Q 003722 237 PKED-VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS 313 (800)
Q Consensus 237 p~~~-l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~-p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~ 313 (800)
+... +..++.+|+++|.+ ++|++|++|++|..|+..+ |.++..++..|+++++|+.+||++||++|+.|++++|+..
T Consensus 260 ~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~ 339 (526)
T PF01602_consen 260 PSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE 339 (526)
T ss_dssp SSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH
T ss_pred cchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhh
Confidence 8654 78999999999975 5789999999999999998 6777778888989989999999999999999999999999
Q ss_pred HHHHHHHhhhcC-ChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhC
Q 003722 314 VFKEFQDYIRDP-DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (800)
Q Consensus 314 Il~EL~~Yv~~~-d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~ 392 (800)
|++||..|+++. |.+++++++++|+.||.+++....||++++++++... +..+..+++.+++++++++
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~-----------~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS-----------GDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT-----------GGGCHCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc-----------cccccchHHHHHHHHhhcC
Confidence 999999999655 8889999999999999999999999999999999842 2456778888999999999
Q ss_pred CcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCC
Q 003722 393 PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (800)
Q Consensus 393 P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~ 472 (800)
|+.+..++.+|++.++++.+|.++++++|++|||++..+... .++++++.++++|..|+..||.++||+++|++.+.|.
T Consensus 409 ~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 409 PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999999999999998644322 6889999999999999999999999999999999986
Q ss_pred CChHHHHHHHHHHHHHHcc-CCChHHHhHHHHHHHHccC
Q 003722 473 GDMWTITRLFSYLLELAEC-DLNYDVRDRARFFKKLFSH 510 (800)
Q Consensus 473 e~~~~l~~L~q~vl~la~~-D~n~DVRDRAr~y~~LL~~ 510 (800)
+.. ...+++++..++++ |.|+||||||+||++||..
T Consensus 488 ~~~--~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 488 NEV--QNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp TTH--HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred hhh--HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 432 34678888888875 5699999999999999964
No 5
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.7e-46 Score=430.06 Aligned_cols=410 Identities=23% Similarity=0.351 Sum_probs=339.0
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHH-HHHHHHHHhcCCCccHHHHHHHHHHHhCC
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASICP 79 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~-L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP 79 (800)
||.||+++++++++.+|++|+.|++|||||+||+||.|+|+++++.-.+. +++++..|+.|.||.|+++|+.+|.+|+|
T Consensus 116 ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 116 LSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 78999999999999999999999999999999999999999999554444 78888999999999999999999999999
Q ss_pred CcccchhHHHHHHHHhCCCCC--------hhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCccccccccccccc
Q 003722 80 NNFTLIGRNYRNLCQILPDVE--------EWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALED 151 (800)
Q Consensus 80 ~~~~Lih~~yr~Lc~~L~d~d--------EWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~ 151 (800)
+ +.|++++..|..++.++ ||.+..+++.|+.|.++.
T Consensus 196 e---~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~--------------------------------- 239 (757)
T COG5096 196 E---LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTT--------------------------------- 239 (757)
T ss_pred h---hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCC---------------------------------
Confidence 9 78889999999988866 777778888887776421
Q ss_pred CCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHH
Q 003722 152 NGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV 231 (800)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~ 231 (800)
.| +...+..++.|.+++.|++|++.+++.
T Consensus 240 --------------------------------------------------~~-s~~~~~~~~~~~~~~~n~~vl~~av~~ 268 (757)
T COG5096 240 --------------------------------------------------PD-SAEDFEERLSPPLQHNNAEVLLIAVKV 268 (757)
T ss_pred --------------------------------------------------CC-cHHHHHHhccchhhhCcHHHHHHHHHH
Confidence 01 234577788899999999999999999
Q ss_pred HHhcCCH----HHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhc
Q 003722 232 HWIMSPK----EDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIV 306 (800)
Q Consensus 232 ~~~l~p~----~~l~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La 306 (800)
.+.+.+. ........||+.|+..+ ..++|+.+.++..+...+|..|.--.+.||++++||.|++..|+++++.++
T Consensus 269 i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~ 348 (757)
T COG5096 269 ILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLA 348 (757)
T ss_pred HHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcC
Confidence 8887753 23555667788888766 689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhH---
Q 003722 307 TESSISSVFKEFQDYIRD--PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQS--- 381 (800)
Q Consensus 307 ~e~Nv~~Il~EL~~Yv~~--~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~--- 381 (800)
+..|..+++-|+.+|+.. .|.+++.++|++||.+|.+.+.....|++.++++++ | .+.. ..+++.|+
T Consensus 349 ~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~------g-~~~~-~~Yi~~e~~~~ 420 (757)
T COG5096 349 DDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLE------G-VWIR-GSYIVQEVRIV 420 (757)
T ss_pred CchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcc------c-hhhc-cchhhhhhccc
Confidence 999999999999999999 899999999999999999999999999999999987 1 1111 23444444
Q ss_pred --HHHHH---HHHHhCCcc-hHHHHHHHHHhhhccC----hhhHHHHH-----HhhhccccCCCCCCcchHHHHHHHHHh
Q 003722 382 --IISIK---SIIKQDPSC-HEKVIIQLFRSLDSIK----VPEARVMI-----IWMVGEYSSVGVKIPRMLTTVLKYLAW 446 (800)
Q Consensus 382 --V~vi~---~Il~~~P~~-~~~~i~~L~~~ld~i~----~p~Arasi-----iWLlGEy~~~~~~ip~i~~dvLr~l~~ 446 (800)
|.+++ .+++.+|.. .+..+..++...+.++ .|.+|.++ +||+|||++. +|...|+++|.+..
T Consensus 421 ~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~---i~r~~~~~l~~~~~ 497 (757)
T COG5096 421 DCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDI---IPRLEPELLRIAIS 497 (757)
T ss_pred ceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHH---HhhhhHHHHHHHHH
Confidence 44454 567777665 4444445555555554 79988888 9999999974 57778899999999
Q ss_pred hhccCcHHHHHHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 003722 447 CFKSEAVETKLQILNTTIKVLLCAKGGDMW----TITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (800)
Q Consensus 447 ~F~~E~~~VKlqILta~aKL~~~~p~e~~~----~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~ 511 (800)
+|.+|+.+||.+||++.+|+++..+....+ ....+.+++++ +-.++|+||||+||+++++.+
T Consensus 498 ~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~---~v~~~DlRDra~my~~~lst~ 563 (757)
T COG5096 498 NFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFD---YVLVPDLRDRARMYSRLLSTP 563 (757)
T ss_pred HhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHh---ccCChhHHHHHHHHHHHhcCC
Confidence 999999999999999999999998753221 11133333333 335789999999999999843
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-38 Score=361.45 Aligned_cols=453 Identities=17% Similarity=0.227 Sum_probs=337.6
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~ 80 (800)
+|.|--+|+++-+.+-|.+.+..++|||||.|++|..|+++..| +..+.++.--.++|+|++++|+++++..+.++|-.
T Consensus 131 lg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 131 LGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred hhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 36677899999999999999999999999999999999999999 76777777778899999999999999999999965
Q ss_pred c---ccchhHHHHHHHHhCCC---------------CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccc
Q 003722 81 N---FTLIGRNYRNLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDV 142 (800)
Q Consensus 81 ~---~~Lih~~yr~Lc~~L~d---------------~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~ 142 (800)
. ++-..+....|+.+|.+ .|||-||.||++|.-|.+.. +. .+|.
T Consensus 210 ~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d-----~d-------------aSd~ 271 (866)
T KOG1062|consen 210 SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND-----AD-------------ASDL 271 (866)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC-----cc-------------HHHH
Confidence 4 33223333344444443 79999999999999997421 10 0011
Q ss_pred cccccccccCCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhc--cCC
Q 003722 143 FDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLL--WSH 220 (800)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL--~S~ 220 (800)
|++ +|-+.+...= +..
T Consensus 272 M~D--------------------------------------------------------------iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 272 MND--------------------------------------------------------------ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--------------------------------------------------------------HHHHHHhcccccccc
Confidence 100 0001111111 233
Q ss_pred ChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHH
Q 003722 221 NSAVVLAAAGVHWIMSPKEDV-KRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKAL 297 (800)
Q Consensus 221 NsAVVlaaa~~~~~l~p~~~l-~~~v~pLv~LL-~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~l 297 (800)
+.|+.++|+++++.+.+...+ ..+++.|-++| +++.|+|||+|..+.+.++..|...+.|-....-|..|| ..||++
T Consensus 290 GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrr 369 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRR 369 (866)
T ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 468999999999999886654 45677887776 568999999999999999999999999987776666775 689999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCch
Q 003722 298 KLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV 377 (800)
Q Consensus 298 KLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~v 377 (800)
.||+++.|+|++|+..+++||.+|+...|.+|+...+..|..+|++|++...|.++++++.++.. | ..|
T Consensus 370 alELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a---G--------~~V 438 (866)
T KOG1062|consen 370 ALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA---G--------DFV 438 (866)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc---c--------ccc
Confidence 99999999999999999999999999999999999999999999999999999999999998742 2 222
Q ss_pred hHhHHHHHHHHHHhC-CcchHHHHHHHHHhhhc-----cChhhHHHHHHhhhccccCCCCC-------CcchHHHHH---
Q 003722 378 LIQSIISIKSIIKQD-PSCHEKVIIQLFRSLDS-----IKVPEARVMIIWMVGEYSSVGVK-------IPRMLTTVL--- 441 (800)
Q Consensus 378 v~E~V~vi~~Il~~~-P~~~~~~i~~L~~~ld~-----i~~p~ArasiiWLlGEy~~~~~~-------ip~i~~dvL--- 441 (800)
-.+++..+-+||-.- ++.|+..+.+|...+.. +..+.....++|.|||||++.-. +-....++.
T Consensus 439 ~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l 518 (866)
T KOG1062|consen 439 NDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKL 518 (866)
T ss_pred chhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHH
Confidence 222344455666666 88899999988875543 55555566679999999964210 111123444
Q ss_pred HHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCcCCCCccchh
Q 003722 442 KYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETN 521 (800)
Q Consensus 442 r~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~ 521 (800)
..+..++.. +..+|.++|++++||..+.+.. .++++++ +..-+-+.+.|+|+||.+|..|+...
T Consensus 519 ~~v~~~~~s-~~~tk~yal~Al~KLSsr~~s~-~~ri~~l----I~~~~~s~~~elQQRa~E~~~l~~~~---------- 582 (866)
T KOG1062|consen 519 EKVLMSHSS-DSTTKGYALTALLKLSSRFHSS-SERIKQL----ISSYKSSLDTELQQRAVEYNALFAKD---------- 582 (866)
T ss_pred HHHHHhccc-hHHHHHHHHHHHHHHHhhcccc-HHHHHHH----HHHhcccccHHHHHHHHHHHHHHHHH----------
Confidence 444444433 3889999999999999999863 3445443 33345678999999999999999653
Q ss_pred hhhccCCchHHHHHhhhccCCCCCCCCCcccccccCCchhHHhhccCCCCcc
Q 003722 522 ALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEP 573 (800)
Q Consensus 522 ~~~~~~~~~~~la~~lf~~~~~~~~~~~~~~r~~~lGSLS~~~~~~~~gy~~ 573 (800)
.++.+.|+..+|..... +...+. =|.....+...+.+|-+
T Consensus 583 ---------~~lr~siLe~mp~~e~~-~~~~~~--~g~~~~~i~~~~~p~~~ 622 (866)
T KOG1062|consen 583 ---------KHLRKSILERMPSCEDI-TVDARL--DGNGPAAIEQGAEPYKS 622 (866)
T ss_pred ---------HHHHHHhcccCcccccc-cccccc--ccchHHHHHhccCCCcc
Confidence 14567788777766431 121221 37888888777777655
No 7
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-38 Score=350.44 Aligned_cols=432 Identities=18% Similarity=0.216 Sum_probs=331.7
Q ss_pred cccccchHHHHHHHHhhcC--CCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC--
Q 003722 4 IRLHVISPLVLVAVGKCAR--DPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC-- 78 (800)
Q Consensus 4 IRv~~I~~iv~~aIkk~l~--D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc-- 78 (800)
|--.++.+-+-.-|.|.+. +..+||||.||+|+.++|+..|+. ....|.+.+-.||+|++-+|+.||...+.-++
T Consensus 138 iG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 138 IGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKK 217 (938)
T ss_pred hccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHc
Confidence 3345566666666777664 578999999999999999999955 44578888888999999999999888777776
Q ss_pred -CCccc-chhHHHHHHHHhCCC-------------CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCccccc
Q 003722 79 -PNNFT-LIGRNYRNLCQILPD-------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVF 143 (800)
Q Consensus 79 -P~~~~-Lih~~yr~Lc~~L~d-------------~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~ 143 (800)
|+.+. -+.++..+|.++... ..||.|+.++++|..|.+.+ ||.
T Consensus 218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~----D~~------------------ 275 (938)
T KOG1077|consen 218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPE----DPS------------------ 275 (938)
T ss_pred CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCC----Cch------------------
Confidence 44322 244455555555321 58999999999999995321 010
Q ss_pred ccccccccCCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhh-----hhcc
Q 003722 144 DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS-----PLLW 218 (800)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~-----pLL~ 218 (800)
+.. . +..-++.+|+... .-.|
T Consensus 276 -----------------~r~------~-------------------------------l~evl~~iLnk~~~~~~~k~vq 301 (938)
T KOG1077|consen 276 -----------------TRA------R-------------------------------LNEVLERILNKAQEPPKSKKVQ 301 (938)
T ss_pred -----------------HHH------H-------------------------------HHHHHHHHHhccccCccccchH
Confidence 000 0 0011111222221 1135
Q ss_pred CCCh--HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC--cccccccccceecc-CC-
Q 003722 219 SHNS--AVVLAAAGVHWIMSP-KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--HLFVPHYEDFFVSS-SD- 290 (800)
Q Consensus 219 S~Ns--AVVlaaa~~~~~l~p-~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p--~lF~~~l~~Ffi~~-~D- 290 (800)
++|. ||.++++++.+|+.+ ++.+.+++..|..+|+. .+|+||++|.++..|+...+ +....|....+-.. .+
T Consensus 302 ~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkter 381 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTER 381 (938)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhcccc
Confidence 5664 899999999999987 56789999999999975 79999999999999998765 35556765444332 34
Q ss_pred chHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccC
Q 003722 291 SYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIES 370 (800)
Q Consensus 291 p~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~ 370 (800)
+.+||++.+|+||.+|+.+|++.|+.||+.|+...|..++.+.+-+++.+|+||+.+..|++++.++||+.. |+ +
T Consensus 382 DvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria---gd--~ 456 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA---GD--Y 456 (938)
T ss_pred chHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh---cc--c
Confidence 468999999999999999999999999999999999999999999999999999999999999999999863 22 1
Q ss_pred CCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhc--cChhhHHHHHHhhhccccCCCCCCcchH-HHHHHHHHhh
Q 003722 371 GNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRML-TTVLKYLAWC 447 (800)
Q Consensus 371 ~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~--i~~p~ArasiiWLlGEy~~~~~~ip~i~-~dvLr~l~~~ 447 (800)
++ + .||. ++.+|+.++++.+..+++++.+++.. +.+...|++ .+|+||||+++..-|.+. ...|..+..+
T Consensus 457 vs-d--eVW~---RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvg-gyiLGEfg~LIa~~prss~~~qFsllh~K 529 (938)
T KOG1077|consen 457 VS-D--EVWY---RVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVG-GYILGEFGNLIADDPRSSPAVQFSLLHEK 529 (938)
T ss_pred cc-H--HHHH---HhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhh-hhhhhhhhhhhcCCCCCChHHHHHHHHHH
Confidence 11 2 3565 56789999999999999999999975 456677777 899999999876555443 4568899999
Q ss_pred hccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCcCCCCccchhhhhccC
Q 003722 448 FKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENK 527 (800)
Q Consensus 448 F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~ 527 (800)
|+..++.+|..+||+.+|++...|+ ++.-.+.||++..+-.|+|+|+||.+|..|..... .
T Consensus 530 ~~~~s~~tr~lLLtTyiKl~nl~PE-----i~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as--------------~ 590 (938)
T KOG1077|consen 530 LHLCSPVTRALLLTTYIKLINLFPE-----IKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLAS--------------T 590 (938)
T ss_pred hccCChhHHHHHHHHHHHHHhhChh-----hhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc--------------c
Confidence 9999999999999999999999986 44555566666555579999999999999997642 1
Q ss_pred CchHHHHHhhhccCCCCCC
Q 003722 528 DLPLVLVECIFRKQENLAA 546 (800)
Q Consensus 528 ~~~~~la~~lf~~~~~~~~ 546 (800)
|+ | ..+|.++|||+.
T Consensus 591 dv---L-~~vleeMPpF~e 605 (938)
T KOG1077|consen 591 DV---L-QTVLEEMPPFPE 605 (938)
T ss_pred hH---H-HHHHhhCCCCcc
Confidence 32 3 467899999986
No 8
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.1e-28 Score=272.58 Aligned_cols=326 Identities=18% Similarity=0.297 Sum_probs=272.4
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh--hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~--~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+|.+|-|++++.++++|+.|+.++++||||.|++||.-+|+....- +.++|++- .|+.+.||.+..+|+..+..+.
T Consensus 123 LckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~--fL~~e~DpsCkRNAFi~L~~~D 200 (948)
T KOG1058|consen 123 LCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIES--FLLTEQDPSCKRNAFLMLFTTD 200 (948)
T ss_pred hhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHH--HHHhccCchhHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999873211 34555543 4779999999999999999999
Q ss_pred CCcccchhHHHHHHHHhCCCCChhh---HHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCC
Q 003722 79 PNNFTLIGRNYRNLCQILPDVEEWG---QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIP 155 (800)
Q Consensus 79 P~~~~Lih~~yr~Lc~~L~d~dEWg---Qi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (800)
|++ +..+|...+.++..|+ |.+|++++..-+-++ |.
T Consensus 201 ~Er------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~-----p~------------------------------ 239 (948)
T KOG1058|consen 201 PER------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN-----PA------------------------------ 239 (948)
T ss_pred HHH------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC-----HH------------------------------
Confidence 987 4456777766666555 899999887765311 10
Q ss_pred CCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc
Q 003722 156 SRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM 235 (800)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l 235 (800)
.-.++++++..+|++.++||+++|+..+..+
T Consensus 240 -------------------------------------------------~~~~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 240 -------------------------------------------------EKARYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred -------------------------------------------------HhhHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 0136889999999999999999999999888
Q ss_pred CC-HHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHhCCccccccccccee-ccCCchHHHHHHHHHHHhhcCCCCH
Q 003722 236 SP-KEDVKRIVKPLLFILR--SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFV-SSSDSYQSKALKLEILSSIVTESSI 311 (800)
Q Consensus 236 ~p-~~~l~~~v~pLv~LL~--s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi-~~~Dp~~Ik~lKLeIL~~La~e~Nv 311 (800)
++ +..+++++..++.|+- +++|++.++|+.|..+...+..+|+...-.|.- ...-+..||++.|+|...|++..|+
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv 350 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV 350 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH
Confidence 76 6789999999999984 579999999999999998888899998877763 3344468999999999999999999
Q ss_pred HHHHHHHHHhhhc-------CChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHH
Q 003722 312 SSVFKEFQDYIRD-------PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (800)
Q Consensus 312 ~~Il~EL~~Yv~~-------~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~v 384 (800)
.+|+.-|+.-+.. .+..+++..|++|..||.+||..+..++..|+++|... +.......+..
T Consensus 351 ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~-----------N~~aas~vl~F 419 (948)
T KOG1058|consen 351 EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS-----------NEAAASDVLMF 419 (948)
T ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC-----------CHHHHHHHHHH
Confidence 9999988765532 12368999999999999999999999999999998631 22234456678
Q ss_pred HHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCC
Q 003722 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV 429 (800)
Q Consensus 385 i~~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~ 429 (800)
++..++++|+.+..++.+|.+.++.|..+.+..+.+||+||||..
T Consensus 420 vrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 420 VREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred HHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999963
No 9
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-25 Score=254.24 Aligned_cols=407 Identities=17% Similarity=0.230 Sum_probs=305.9
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC--
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC-- 78 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc-- 78 (800)
+|+|--|.++--+..-|-..++.+-|||||.|++.+.|+|-..|+..++.+-.+.++ |.|.||+|++||+.+++|+.
T Consensus 133 LS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~Ek-LeDpDp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 133 LSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEK-LEDPDPSVVSAAVSVICELARK 211 (877)
T ss_pred cccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHh-ccCCCchHHHHHHHHHHHHHhh
Confidence 466777888888999999999999999999999999999999997688888776665 79999999999999999995
Q ss_pred -CCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCC
Q 003722 79 -PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (800)
Q Consensus 79 -P~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (800)
|.++=-+.|.|.+|+. ..-+.|.-|.+|.++...++-. |-
T Consensus 212 nPknyL~LAP~ffkllt--tSsNNWmLIKiiKLF~aLtplE-----PR-------------------------------- 252 (877)
T KOG1059|consen 212 NPQNYLQLAPLFYKLLV--TSSNNWVLIKLLKLFAALTPLE-----PR-------------------------------- 252 (877)
T ss_pred CCcccccccHHHHHHHh--ccCCCeehHHHHHHHhhccccC-----ch--------------------------------
Confidence 7777778899999865 5679999999999999887521 10
Q ss_pred CcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCCh-HHHHHHHHHHHhc-
Q 003722 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAGVHWIM- 235 (800)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~Ns-AVVlaaa~~~~~l- 235 (800)
+. ..||..+..++.|..+ +++++|+++....
T Consensus 253 ---------Lg--------------------------------------KKLieplt~li~sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 253 ---------LG--------------------------------------KKLIEPITELMESTVAMSLLYECVNTVVAVS 285 (877)
T ss_pred ---------hh--------------------------------------hhhhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence 00 1244455555555555 5999999998754
Q ss_pred ----CC--HHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCcccccccccceeccCC-chHHHHHHHHHHHhhcC
Q 003722 236 ----SP--KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD-SYQSKALKLEILSSIVT 307 (800)
Q Consensus 236 ----~p--~~~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~D-p~~Ik~lKLeIL~~La~ 307 (800)
.| ...++.++.-|-.|+. +++|.+|++|-.+.+|+..+|...+.|-....-+.+| +.+||.+.|++|+-+++
T Consensus 286 ~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 286 MSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred hccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 22 3457788888866664 6899999999999999999999999997665544444 67899999999999999
Q ss_pred CCCHHHHHHHHHHhhhcCCh-hHHHHHH-HHHHHHHhh-C--CccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHH
Q 003722 308 ESSISSVFKEFQDYIRDPDR-RFAADTV-AAIGLCARK-L--PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI 382 (800)
Q Consensus 308 e~Nv~~Il~EL~~Yv~~~d~-~f~~~aI-~aIg~lA~k-~--p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V 382 (800)
+.|+..|++-|..|+...+. .++-+.+ +-|+.|+.. | =...+|++.+|++|.+.+. ..| + ..+.+
T Consensus 366 kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~----~~~---G-~~I~e-- 435 (877)
T KOG1059|consen 366 KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG----TRH---G-SLIAE-- 435 (877)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc----cch---h-hHHHH--
Confidence 99999999999999987777 6888777 666777653 2 3567899999999988652 111 1 23444
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHhhhcc----------ChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHh-hhccC
Q 003722 383 ISIKSIIKQDPSCHEKVIIQLFRSLDSI----------KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAW-CFKSE 451 (800)
Q Consensus 383 ~vi~~Il~~~P~~~~~~i~~L~~~ld~i----------~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~-~F~~E 451 (800)
.|.++-.+-|..+...+......+++- .-++...+.+|++|||+...+. | .+++..+.+ ++...
T Consensus 436 -Qi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven-~---~~~leamlrpr~~~l 510 (877)
T KOG1059|consen 436 -QIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN-P---NDTLEAMLRPRSDLL 510 (877)
T ss_pred -HHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC-H---HHHHHHHhcCccccC
Confidence 355666677887777787777777621 1255666779999999876542 2 477777774 55577
Q ss_pred cHHHHHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHH---HHccCCChHHHhHHHHHHHHcc
Q 003722 452 AVETKLQILNTTIKVLLCA-----KGGDMWTITRLFSYLLE---LAECDLNYDVRDRARFFKKLFS 509 (800)
Q Consensus 452 ~~~VKlqILta~aKL~~~~-----p~e~~~~l~~L~q~vl~---la~~D~n~DVRDRAr~y~~LL~ 509 (800)
+..++.-.+..++|+|+.. |..+.+.+-.|.+.++. .-.+..+.|||.||.....|+.
T Consensus 511 p~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 511 PGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHH
Confidence 8899999999999998864 22222223333343332 2235569999999655555443
No 10
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=99.84 E-value=2.2e-21 Score=186.55 Aligned_cols=100 Identities=28% Similarity=0.350 Sum_probs=80.3
Q ss_pred hhhhhhhhccCCCCCCCCCccchhhhhccc---------------cceeecccCccccCceeecccccCCCCeeEEEEec
Q 003722 685 SKRALESWLDEQPGSSSPSASEQIQVRQSS---------------ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFS 749 (800)
Q Consensus 685 ~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~k~~~ll~~~~g~gl~~~y~f~ 749 (800)
+|++++++||++||. .++..+.. ..|+ ...+ ...|+||++|+|+|||+++|+||+|+|||+
T Consensus 1 ~k~~~~~LLDLddf~-~p~~~P~~--~~spsl~~~L~~ls~s~~~~~~~-~~~ps~v~~k~~eLL~~v~G~GL~v~Y~F~ 76 (145)
T PF14796_consen 1 PKSKEDSLLDLDDFA-VPPVAPVS--ILSPSLGSDLEGLSLSDSSSVPS-VVSPSFVPPKKYELLNRVNGKGLSVEYRFS 76 (145)
T ss_pred CCccccccccccccc-CCCcCCcc--ccCcchhhhccCCCcCccccccc-ccCCcccCcceEEeeeccCCCceeEEEEEc
Confidence 478899999999987 22222211 2222 1121 123889999999999999999999999999
Q ss_pred CCCccCCCceEEEEEEEEecCCCceeceEeeeccccccc
Q 003722 750 SEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKAL 788 (800)
Q Consensus 750 ~~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~~~~~~~~ 788 (800)
|+||+++++||||||+|+|+|++++++|+|++|++....
T Consensus 77 RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~ 115 (145)
T PF14796_consen 77 RQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGM 115 (145)
T ss_pred cCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCc
Confidence 999999999999999999999999999999999965443
No 11
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-18 Score=199.07 Aligned_cols=410 Identities=19% Similarity=0.213 Sum_probs=302.9
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC------cc---
Q 003722 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN------NF--- 82 (800)
Q Consensus 12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~------~~--- 82 (800)
+++..+.|-.+-..+.+|-.|.-++.++ +|- .....+.++++...-|+++.|-.+|+..=+.+.|. ||
T Consensus 100 ivtsslmkD~t~~~d~yr~~AiR~L~~I--~d~-~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~ne 176 (865)
T KOG1078|consen 100 IVTSSLMKDMTGKEDLYRAAAIRALCSI--IDG-TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANE 176 (865)
T ss_pred hhhHHHHhhccCCCcchhHHHHHHHHhh--cCc-chhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHh
Confidence 4666777777778888887777666644 333 56677889999999999999999998865555443 22
Q ss_pred ---------cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCC
Q 003722 83 ---------TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNG 153 (800)
Q Consensus 83 ---------~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 153 (800)
.+.+-|.+.|+..+.+-|--.--.+++.+++-. +.+|- ..+-- .
T Consensus 177 iqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~-----~~~~~---A~~~l----------------i--- 229 (865)
T KOG1078|consen 177 VQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGS-----LKSPL---AVCML----------------I--- 229 (865)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc-----ccchh---HHHHH----------------H---
Confidence 234466777777776666666555555555410 00110 00000 0
Q ss_pred CCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH
Q 003722 154 IPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW 233 (800)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~ 233 (800)
....+...+ + ...+.- +..-+..+|.|...+|+++|++++.
T Consensus 230 -----------r~~~~~l~~------------~-------------~~~~s~---~~~fl~s~l~~K~emV~~EaArai~ 270 (865)
T KOG1078|consen 230 -----------RIASELLKE------------N-------------QQADSP---LFPFLESCLRHKSEMVIYEAARAIV 270 (865)
T ss_pred -----------HHHHHHhhh------------c-------------ccchhh---HHHHHHHHHhchhHHHHHHHHHHHh
Confidence 000000000 0 001222 3444556788999999999999987
Q ss_pred hcCC--HHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHHHHHHHHhhcCCC
Q 003722 234 IMSP--KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTES 309 (800)
Q Consensus 234 ~l~p--~~~l~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~lKLeIL~~La~e~ 309 (800)
.+.. ...+..++..|-.++.++ +-.||.+++.|.+++..+|+...-.-...--+-+|+ ..|..+|+..|++-.+++
T Consensus 271 ~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~ 350 (865)
T KOG1078|consen 271 SLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTES 350 (865)
T ss_pred hccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchh
Confidence 7653 455666777777777774 678999999999999999987664433333335675 589999999999999999
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHH
Q 003722 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (800)
Q Consensus 310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il 389 (800)
|+..+++.+..|+.+.+++|..-.|.||..++.+||......+++|-++|+++ |+.. +....|.+|-.|+
T Consensus 351 sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~e---Gg~e-------~K~aivd~Ii~ii 420 (865)
T KOG1078|consen 351 SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREE---GGFE-------FKRAIVDAIIDII 420 (865)
T ss_pred HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhc---cCch-------HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999874 3333 3333445666788
Q ss_pred HhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhh
Q 003722 390 KQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC 469 (800)
Q Consensus 390 ~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~ 469 (800)
..+|+..+..+.+||.+++++..+..-.-|+.++|.-|... ..| ..+.|+++++..-|+..||...+++++|+...
T Consensus 421 e~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a-~~P---skyir~iyNRviLEn~ivRaaAv~alaKfg~~ 496 (865)
T KOG1078|consen 421 EENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKA-PNP---SKYIRFIYNRVILENAIVRAAAVSALAKFGAQ 496 (865)
T ss_pred HhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCC-CCc---chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC
Confidence 89999999999999999999999888888999999988643 234 47899999999999999999999999999965
Q ss_pred cCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHcc
Q 003722 470 AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 509 (800)
Q Consensus 470 ~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~ 509 (800)
.+.-.. .+.-+ +..|.+|.+.+|||||+||.+.+.
T Consensus 497 ~~~l~~-sI~vl----lkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 497 DVVLLP-SILVL----LKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCCccc-cHHHH----HHHHhcCchHHHHHHHHHHHHHhh
Confidence 544222 23333 455678999999999999999887
No 12
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.81 E-value=3.5e-17 Score=181.78 Aligned_cols=281 Identities=17% Similarity=0.165 Sum_probs=231.1
Q ss_pred hhhccCCChHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceecc
Q 003722 214 SPLLWSHNSAVVLAAAGVHWIMSP----KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSS 288 (800)
Q Consensus 214 ~pLL~S~NsAVVlaaa~~~~~l~p----~~~l~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~ 288 (800)
..+|.+...+|.|++|++.+.++. ++.+...+..|-.+|.+. .-.||.+++.|..|+..+|+...-.-+..--+-
T Consensus 270 ~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI 349 (898)
T COG5240 270 NSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI 349 (898)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh
Confidence 344556668999999999888654 456788888998888874 568999999999999999986654433333334
Q ss_pred CCc-hHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhcccc
Q 003722 289 SDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSD 367 (800)
Q Consensus 289 ~Dp-~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~ 367 (800)
+|. ..|...++.-|.+-.|++|+..+++.+-.|+.|..+.|..-+|.||..++.+||.....++++|.+.|.++ |+
T Consensus 350 sd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e---Gg 426 (898)
T COG5240 350 SDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE---GG 426 (898)
T ss_pred hcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc---cc
Confidence 553 57999999999999999999999999999999999999999999999999999999999999999988764 22
Q ss_pred ccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhh
Q 003722 368 IESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC 447 (800)
Q Consensus 368 ~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~ 447 (800)
. .+-.-.|.+|.+++...|+..+.++..||.+++++..++.-..|+-|+|+-|... ..| ..+.|+++++
T Consensus 427 ~-------eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a-~~P---~~yvrhIyNR 495 (898)
T COG5240 427 L-------EFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRA-KTP---GKYVRHIYNR 495 (898)
T ss_pred c-------hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCC-CCc---chHHHHHHHH
Confidence 2 2334455577889999999999999999999999999999999999999988643 233 4789999999
Q ss_pred hccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 003722 448 FKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (800)
Q Consensus 448 F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~ 511 (800)
..-|...||...+.++.|+.+...... +.+-...+|..|.+|.|.+|||||-|..+-+...
T Consensus 496 ~iLEN~ivRsaAv~aLskf~ln~~d~~---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 496 LILENNIVRSAAVQALSKFALNISDVV---SPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHhhhHHHHHHHHHHHHhccCccccc---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 999999999999999999987654322 2334445667778899999999999999888643
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.84 E-value=2.4e-07 Score=107.78 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=44.6
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHh
Q 003722 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (800)
Q Consensus 16 aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~ 95 (800)
.+-+.+..+++.+||.+-+++..+...+| +..--....+.+=|.+++|.+.+.|+.++..++.. +++......+.+.
T Consensus 46 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~l 122 (526)
T PF01602_consen 46 EVIKLISSKDLELKRLGYLYLSLYLHEDP-ELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKL 122 (526)
T ss_dssp HHHCTCSSSSHHHHHHHHHHHHHHTTTSH-HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHH
Confidence 33344445566666666666665555555 22222333333345555666666666666555521 2333333344444
Q ss_pred CCCCChhhHHHHHHHHHh
Q 003722 96 LPDVEEWGQILLIEILLR 113 (800)
Q Consensus 96 L~d~dEWgQi~iL~lL~r 113 (800)
|.+-++.-+-..+-.+.+
T Consensus 123 l~~~~~~VRk~A~~~l~~ 140 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLK 140 (526)
T ss_dssp HHSSSHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHH
Confidence 445555444444433333
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=98.27 E-value=0.0013 Score=79.89 Aligned_cols=302 Identities=15% Similarity=0.099 Sum_probs=173.5
Q ss_pred ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchh
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIG 86 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih 86 (800)
|+++-+++.+++|-+.|++|+||-.|.-++.++ ..| +..+.+...+.++|.|++|.|--+|+.++..+....-+++.
T Consensus 100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~ 176 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVS-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY 176 (746)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc
Confidence 566678899999999999999999999988865 345 55677888889999999999999999998776432222222
Q ss_pred --HHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhh
Q 003722 87 --RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV 164 (800)
Q Consensus 87 --~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 164 (800)
.-.-+|-.+|.|-|+--+...+.+|....... |. .+..
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~-----~~-~l~l---------------------------------- 216 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG-----SE-KIES---------------------------------- 216 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC-----ch-hhHH----------------------------------
Confidence 12335666678888888888888887765211 10 0000
Q ss_pred hhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH--HHHH
Q 003722 165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK--EDVK 242 (800)
Q Consensus 165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~--~~l~ 242 (800)
.+ +-+..|++ .|...|.=-.+...+++....|. ....
T Consensus 217 ---~~----------------------------------~~~~~Ll~----~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~ 255 (746)
T PTZ00429 217 ---SN----------------------------------EWVNRLVY----HLPECNEWGQLYILELLAAQRPSDKESAE 255 (746)
T ss_pred ---HH----------------------------------HHHHHHHH----HhhcCChHHHHHHHHHHHhcCCCCcHHHH
Confidence 00 00011111 11222221222223333333342 3345
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhCC----cccccccc---c--ceeccCCchHHHHHHHHHHHhhcCCCCHHH
Q 003722 243 RIVKPLLFILRSSGASKYVVLCNIQVFAKALP----HLFVPHYE---D--FFVSSSDSYQSKALKLEILSSIVTESSISS 313 (800)
Q Consensus 243 ~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p----~lF~~~l~---~--Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~ 313 (800)
.+...+...|.+.+ ..|+|..+..++...+ .+...-++ . .++..++| .++...|+-|..|+... -..
T Consensus 256 ~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~-eiqyvaLr~I~~i~~~~-P~l 331 (746)
T PTZ00429 256 TLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDA-ETQYIVCKNIHALLVIF-PNL 331 (746)
T ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCc-cHHHHHHHHHHHHHHHC-HHH
Confidence 56666666665422 3455555555443332 22222111 1 22333444 47777776665555422 233
Q ss_pred HHHHHHH-hhhcCChh-HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHh
Q 003722 314 VFKEFQD-YIRDPDRR-FAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (800)
Q Consensus 314 Il~EL~~-Yv~~~d~~-f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~ 391 (800)
+..++.. |+.-.|+. ++...+.-+-.+| -+.....+++=|...+.. .+..++.++|..|..+-.+
T Consensus 332 f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La--ne~Nv~~IL~EL~eYa~d-----------~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 332 LRTNLDSFYVRYSDPPFVKLEKLRLLLKLV--TPSVAPEILKELAEYASG-----------VDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHhhhcccCCcHHHHHHHHHHHHHHc--CcccHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHHh
Confidence 4445544 35555654 4445555555554 245555666555554431 1334778888888888888
Q ss_pred CCcchHHHHHHHHHhhhc
Q 003722 392 DPSCHEKVIIQLFRSLDS 409 (800)
Q Consensus 392 ~P~~~~~~i~~L~~~ld~ 409 (800)
+|......+..|++.+..
T Consensus 399 ~~~~a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 399 VDSVAPDCANLLLQIVDR 416 (746)
T ss_pred ChHHHHHHHHHHHHHhcC
Confidence 888888888888877753
No 15
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0012 Score=78.10 Aligned_cols=56 Identities=30% Similarity=0.428 Sum_probs=51.4
Q ss_pred ccCccccCceeecccccCCCCeeEEEEecCCCccCCCceEEEEEEEEecCCCceeceEeeec
Q 003722 721 NIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDE 782 (800)
Q Consensus 721 ~~~~~~~~k~~~ll~~~~g~gl~~~y~f~~~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~~ 782 (800)
++|..++.|.+++||++.|+||-++|+|+|.|. |.+++.|+|.++.++.+||++-.
T Consensus 769 ~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~~------~~i~~~~~n~~~~~~~~~~l~~p 824 (968)
T KOG1060|consen 769 KIPTHIEEKSIELLNEVEGSGLDLEYSFSRLPD------VSISLHFTNKSDLELLGIHLKLP 824 (968)
T ss_pred cCCccCcchhHhhhhhcccCCcceeeeccCCCC------eeEEEecccCCCcccccceeecc
Confidence 467899999999999999999999999999993 88999999999999999999543
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.20 E-value=4.6e-06 Score=84.20 Aligned_cols=112 Identities=25% Similarity=0.309 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHH-HHHHHHHhcCCCccHHHHHHHHHHHhCCC-
Q 003722 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAI-EEIVGILLNDRSPGVVGAAAAAFASICPN- 80 (800)
Q Consensus 3 sIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L-~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~- 80 (800)
.+|.|.+++..+..+.+++.|++|+|||+|++++.++..-+.-..++.+ ..++ .+|.|.++.|...|...|.++...
T Consensus 16 ~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l-~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 16 CIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL-KLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999988763355666 5555 578999999999999999999755
Q ss_pred cccchhHHHHHHHHhCCCCChhhH---------HHHHHHHHhhh
Q 003722 81 NFTLIGRNYRNLCQILPDVEEWGQ---------ILLIEILLRYV 115 (800)
Q Consensus 81 ~~~Lih~~yr~Lc~~L~d~dEWgQ---------i~iL~lL~rY~ 115 (800)
.-..+..++-.++..|..+.+|.+ ..+++.|..|.
T Consensus 95 ~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 95 NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 456777888888888888888863 35666666665
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.18 E-value=0.00015 Score=90.58 Aligned_cols=226 Identities=13% Similarity=0.081 Sum_probs=134.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHH
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL 92 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~L 92 (800)
.+..+...+.|.+|.||+.|+.++.++. +| ...+.|..+|+|.++.|-..|+.++.++-... . .-..|
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~~-----~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~----~~~~L 689 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--PP-----GFGPALVAALGDGAAAVRRAAAEGLRELVEVL-P----PAPAL 689 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--ch-----hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-C----chHHH
Confidence 4567788899999999999999999864 22 23445557889999999999999998883110 0 11246
Q ss_pred HHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhh
Q 003722 93 CQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYI 172 (800)
Q Consensus 93 c~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 172 (800)
...|.+-|++-+..+++.|......
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~~~~------------------------------------------------------- 714 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRALRAG------------------------------------------------------- 714 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhccC-------------------------------------------------------
Confidence 6677778888888888877653210
Q ss_pred cccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 003722 173 EGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL 252 (800)
Q Consensus 173 ~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL 252 (800)
+...|+ .+|...++.|-.+|++.+-.+.+. .+|+.++
T Consensus 715 --------------------------------~~~~l~----~~L~D~d~~VR~~Av~aL~~~~~~-------~~l~~~l 751 (897)
T PRK13800 715 --------------------------------DAALFA----AALGDPDHRVRIEAVRALVSVDDV-------ESVAGAA 751 (897)
T ss_pred --------------------------------CHHHHH----HHhcCCCHHHHHHHHHHHhcccCc-------HHHHHHh
Confidence 001122 245666777777777666555432 2344555
Q ss_pred cC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHH
Q 003722 253 RS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAA 331 (800)
Q Consensus 253 ~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~ 331 (800)
.. ++++|..+...|..+....+..+.. +..+ ..++...||...+.-|..+.++..+ ...|...+.+.|..++.
T Consensus 752 ~D~~~~VR~~aa~aL~~~~~~~~~~~~~-L~~l--l~D~d~~VR~aA~~aLg~~g~~~~~---~~~l~~aL~d~d~~VR~ 825 (897)
T PRK13800 752 TDENREVRIAVAKGLATLGAGGAPAGDA-VRAL--TGDPDPLVRAAALAALAELGCPPDD---VAAATAALRASAWQVRQ 825 (897)
T ss_pred cCCCHHHHHHHHHHHHHhccccchhHHH-HHHH--hcCCCHHHHHHHHHHHHhcCCcchh---HHHHHHHhcCCChHHHH
Confidence 43 4667776666666554333322111 1111 1122245777777776666554322 23344555666666666
Q ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722 332 DTVAAIGLCARKLPKMANTCVEGLLALIR 360 (800)
Q Consensus 332 ~aI~aIg~lA~k~p~~a~~~l~~LL~LL~ 360 (800)
.|++++|.+.. ...+..|+.+|+
T Consensus 826 ~Aa~aL~~l~~------~~a~~~L~~~L~ 848 (897)
T PRK13800 826 GAARALAGAAA------DVAVPALVEALT 848 (897)
T ss_pred HHHHHHHhccc------cchHHHHHHHhc
Confidence 67777765431 234456666654
No 18
>PRK09687 putative lyase; Provisional
Probab=98.07 E-value=0.00032 Score=76.03 Aligned_cols=235 Identities=12% Similarity=0.047 Sum_probs=159.6
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCC-CcccchhHHHHH
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP-NNFTLIGRNYRN 91 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP-~~~~Lih~~yr~ 91 (800)
-+..+.+.+.|.++.||..|+.++.++ .. +...+.+..|+.|.++.|-..|+.+|-++-. .+- ....+.-
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~---~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~ 94 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR---GG----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNI 94 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc---Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHH
Confidence 356778889999999999999998755 22 2334455668899999999999999999863 221 2234444
Q ss_pred HHHh-CCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhh
Q 003722 92 LCQI-LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (800)
Q Consensus 92 Lc~~-L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (800)
|..+ +.|-+++-+...+..|...+...
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~---------------------------------------------------- 122 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATGHRCKKN---------------------------------------------------- 122 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccccc----------------------------------------------------
Confidence 4444 45666666666666665543100
Q ss_pred hhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003722 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF 250 (800)
Q Consensus 171 ~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~ 250 (800)
..+ ...++..+..++.+.++-|-++++..+-.+..+ .++.+|+.
T Consensus 123 -------------------------------~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----~ai~~L~~ 166 (280)
T PRK09687 123 -------------------------------PLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE----AAIPLLIN 166 (280)
T ss_pred -------------------------------ccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----HHHHHHHH
Confidence 000 012445566777888999999999988776654 56678899
Q ss_pred HhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCC-chHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChh
Q 003722 251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD-SYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (800)
Q Consensus 251 LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~D-p~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~ 328 (800)
+|.. ++++++-+...+..+....|..+..-... ..| ...||...+.-|-.+-++.-++.|+++|.. .+
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~----L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~----~~-- 236 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAM----LQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKK----GT-- 236 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHccCChhHHHHHHHHHcC----Cc--
Confidence 9875 57888888888877632344443332221 244 468999999999998888777777776653 33
Q ss_pred HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (800)
Q Consensus 329 f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~ 360 (800)
+...++.|+|.++.. ..+..|..++.
T Consensus 237 ~~~~a~~ALg~ig~~------~a~p~L~~l~~ 262 (280)
T PRK09687 237 VGDLIIEAAGELGDK------TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHhcCCH------hHHHHHHHHHh
Confidence 677899999987753 56677777775
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.79 E-value=0.0015 Score=81.79 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=154.5
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHH
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr 90 (800)
+-.+..|.+.+.|.++-||.+|+.++.++-...+ . . ..+..+|.|.++.|-.+|+.+|..+-+... .
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-~-~----~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~ 717 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-P-A----PALRDHLGSPDPVVRAAALDVLRALRAGDA-------A 717 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-c-h----HHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H
Confidence 3355677788999999999999999988743323 1 1 234457889999999999999988754331 2
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhh
Q 003722 91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (800)
Q Consensus 91 ~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (800)
.|+..|.|-|++-+...++.|.+...
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~------------------------------------------------------ 743 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDD------------------------------------------------------ 743 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccC------------------------------------------------------
Confidence 46677889999888877777665310
Q ss_pred hhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003722 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF 250 (800)
Q Consensus 171 ~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~ 250 (800)
. ..+..+|...|+-|-.+++..+-.+..... .....|+.
T Consensus 744 ---------------------------------~------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~~~~~L~~ 782 (897)
T PRK13800 744 ---------------------------------V------ESVAGAATDENREVRIAVAKGLATLGAGGA--PAGDAVRA 782 (897)
T ss_pred ---------------------------------c------HHHHHHhcCCCHHHHHHHHHHHHHhccccc--hhHHHHHH
Confidence 0 012345777888899999998877764321 12456778
Q ss_pred HhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhH
Q 003722 251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRF 329 (800)
Q Consensus 251 LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f 329 (800)
++.. ++++|..++..|..+-. +......+..+ ..++...||...++.|..+.++.-+ .-|...+.|.+..+
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~--~~~~~~~l~~a--L~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~V 854 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGC--PPDDVAAATAA--LRASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDV 854 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCC--cchhHHHHHHH--hcCCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHH
Confidence 8864 68899998888876532 22111122222 2233467999999999998765544 44455557889999
Q ss_pred HHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722 330 AADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (800)
Q Consensus 330 ~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~ 360 (800)
+..+++++|++ ..+ ......|...++
T Consensus 855 R~~A~~aL~~~--~~~---~~a~~~L~~al~ 880 (897)
T PRK13800 855 RKAAVLALTRW--PGD---PAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhcc--CCC---HHHHHHHHHHHh
Confidence 99999999985 122 234555556655
No 20
>PRK09687 putative lyase; Provisional
Probab=97.77 E-value=0.0014 Score=71.09 Aligned_cols=223 Identities=12% Similarity=0.018 Sum_probs=133.9
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhcCCCccHHHHHHHHHHHhCCCcccchhHHH
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGI-LLNDRSPGVVGAAAAAFASICPNNFTLIGRNY 89 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~-LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~y 89 (800)
+-+...+.+.+.|.+|.||+.|+.++.++=. +........+.|.. +++|+++.|-.+|+.++-++|+..........
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~ 130 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGM--AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV 130 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence 3455667778999999999999999998633 21111233334443 47999999999999999999865432222333
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhh
Q 003722 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR 169 (800)
Q Consensus 90 r~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 169 (800)
-.|...+.|-+..-+...+..|.++.-
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~~~~----------------------------------------------------- 157 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSVIND----------------------------------------------------- 157 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhccCC-----------------------------------------------------
Confidence 344444555544334444444432210
Q ss_pred hhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003722 170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL 249 (800)
Q Consensus 170 ~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv 249 (800)
..-+..+.++|...++.|-.+|+..+=.+... -..+..+|+
T Consensus 158 -------------------------------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--~~~~~~~L~ 198 (280)
T PRK09687 158 -------------------------------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--NPDIREAFV 198 (280)
T ss_pred -------------------------------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 01234556677788888888887776555211 125666777
Q ss_pred HHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhh-cCCh
Q 003722 250 FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR-DPDR 327 (800)
Q Consensus 250 ~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~-~~d~ 327 (800)
.+|.. +.+++--+...+..+ ..+. ..|++-.. ..|+. ++....+-|-.+.++. .+.-|+.++. +.|.
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~--~~~~-av~~Li~~---L~~~~-~~~~a~~ALg~ig~~~----a~p~L~~l~~~~~d~ 267 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALR--KDKR-VLSVLIKE---LKKGT-VGDLIIEAAGELGDKT----LLPVLDTLLYKFDDN 267 (280)
T ss_pred HHhcCCChHHHHHHHHHHHcc--CChh-HHHHHHHH---HcCCc-hHHHHHHHHHhcCCHh----HHHHHHHHHhhCCCh
Confidence 77764 456766666665543 1222 22222222 12332 6677888888888864 4445555553 5677
Q ss_pred hHHHHHHHHHH
Q 003722 328 RFAADTVAAIG 338 (800)
Q Consensus 328 ~f~~~aI~aIg 338 (800)
.++.+++.++.
T Consensus 268 ~v~~~a~~a~~ 278 (280)
T PRK09687 268 EIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHh
Confidence 88888887764
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.39 E-value=0.05 Score=63.94 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=83.9
Q ss_pred cccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (800)
Q Consensus 6 v~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~----~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~ 81 (800)
...+.|-....+.+++.+++|.||.-|+.+|.++-+..... ....+...+-.+|.|.+..|...|+.++..++...
T Consensus 71 ~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~ 150 (503)
T PF10508_consen 71 PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP 150 (503)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence 34557888899999999999999999999999986654311 22446667777899999999999999999998654
Q ss_pred ccc--h-hH-HHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722 82 FTL--I-GR-NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (800)
Q Consensus 82 ~~L--i-h~-~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~ 116 (800)
..+ + .. ...+|.+.+...++=.++.+++++...+.
T Consensus 151 ~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 151 EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 222 2 22 25667777766688888888888777653
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.16 Score=63.07 Aligned_cols=406 Identities=13% Similarity=0.118 Sum_probs=224.8
Q ss_pred hcCCCCchhhHHHHHHHHHHhhcC-chhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHh---CCCcccchhHHH-HHHHH
Q 003722 20 CARDPSVFVRKCAANALPKLHELR-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNNFTLIGRNY-RNLCQ 94 (800)
Q Consensus 20 ~l~D~sPYVRK~AA~AI~Kly~ld-pe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eI---cP~~~~Lih~~y-r~Lc~ 94 (800)
..+-+.|-|||+-|-.|+-|.+.+ | +.=++|...|-..+++.++.---+|+..|..+ .++...-.++-+ +-|.+
T Consensus 88 ~~~E~~~~vr~k~~dviAeia~~~l~-e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q 166 (1075)
T KOG2171|consen 88 IQSETEPSVRHKLADVIAEIARNDLP-EKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQ 166 (1075)
T ss_pred HHhccchHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Confidence 345567788888888888888763 4 35677777777788888888888888776654 344444223333 34445
Q ss_pred hCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhhcc
Q 003722 95 ILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEG 174 (800)
Q Consensus 95 ~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (800)
.+.|.+-=-.+..++.+..|+.... .++ ...+++.
T Consensus 167 ~~~d~s~~vr~~a~rA~~a~~~~~~-----------~~~--------------------------------~~~~~~~-- 201 (1075)
T KOG2171|consen 167 TMTDPSSPVRVAAVRALGAFAEYLE-----------NNK--------------------------------SEVDKFR-- 201 (1075)
T ss_pred hccCCcchHHHHHHHHHHHHHHHhc-----------cch--------------------------------HHHHHHH--
Confidence 5666555466666666666653110 000 0000000
Q ss_pred cccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc---CCH---HHHHHHHHHH
Q 003722 175 LGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM---SPK---EDVKRIVKPL 248 (800)
Q Consensus 175 ~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l---~p~---~~l~~~v~pL 248 (800)
.=+--+|+.+.+.++..+..+.-.+..++..+ .|+ ..+..++.--
T Consensus 202 -----------------------------~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~ 252 (1075)
T KOG2171|consen 202 -----------------------------DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFS 252 (1075)
T ss_pred -----------------------------HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 00012455555556666654333333333322 221 2233333332
Q ss_pred HHHhcC---CCcchHHHHHHHHHHHHhCCccccc---cccccee---------------------c---cCCchHHHHHH
Q 003722 249 LFILRS---SGASKYVVLCNIQVFAKALPHLFVP---HYEDFFV---------------------S---SSDSYQSKALK 298 (800)
Q Consensus 249 v~LL~s---~~ei~yvvL~~I~~L~~~~p~lF~~---~l~~Ffi---------------------~---~~Dp~~Ik~lK 298 (800)
+.+.++ ++.+|..+|..|..++...|..... +....+. - .++|..+....
T Consensus 253 l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~ 332 (1075)
T KOG2171|consen 253 LEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQA 332 (1075)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHH
Confidence 333333 3668888888888877665532221 1111110 0 12255666667
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH----HHHHHHHHHHHHhhhccccccCCCC
Q 003722 299 LEILSSIVT-ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESGNG 373 (800)
Q Consensus 299 LeIL~~La~-e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a----~~~l~~LL~LL~~~~~~~~~~~~~~ 373 (800)
||.|..=-. +.=+..+++-+..++.+.+-..+.++..||+.+++--+... +.++...+..|+. .
T Consensus 333 lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D-----------p 401 (1075)
T KOG2171|consen 333 LDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND-----------P 401 (1075)
T ss_pred HHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-----------C
Confidence 776653333 44457888888999999999999999999999987665433 3444555554432 1
Q ss_pred CCchhHh-HHHHHHHHHHh-CCcc----hHHHHHHHHHhhhccChhhHHH--H-HHhhhccccCCCCCCcchHHHHHHH-
Q 003722 374 EADVLIQ-SIISIKSIIKQ-DPSC----HEKVIIQLFRSLDSIKVPEARV--M-IIWMVGEYSSVGVKIPRMLTTVLKY- 443 (800)
Q Consensus 374 ~~~vv~E-~V~vi~~Il~~-~P~~----~~~~i~~L~~~ld~i~~p~Ara--s-iiWLlGEy~~~~~~ip~i~~dvLr~- 443 (800)
.. .|.. ++..|-++=.. .|+. |+.+...|...+++-..+...+ + .+-=+.|+|..-...|| .+.++..
T Consensus 402 hp-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~ 479 (1075)
T KOG2171|consen 402 HP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKK 479 (1075)
T ss_pred CH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHH
Confidence 22 4443 44455554322 2332 3444556666666655544322 2 12223455542212344 4455552
Q ss_pred HHhhhccCcHHHHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCcC
Q 003722 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGG---DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLC 513 (800)
Q Consensus 444 l~~~F~~E~~~VKlqILta~aKL~~~~p~e---~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~ 513 (800)
+.---......||-|++|+++-+..-.... -.+++-.++..+|..+..+....+|=...+-..++...++
T Consensus 480 l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 480 LLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence 222223567889999999999887654321 1234444566677766655678888888777777766553
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.099 Score=61.48 Aligned_cols=413 Identities=15% Similarity=0.138 Sum_probs=232.6
Q ss_pred cccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCch---hhHHHHHHHHHHHhcCCCccHHHHHHHHHHH----
Q 003722 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAAAFAS---- 76 (800)
Q Consensus 4 IRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe---~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~e---- 76 (800)
+==.+++|++++-+|+.+....+.||-++++|+.-+-.=.-+ ...+.|+.++-.+|.|+-|.|-+-+--.+..
T Consensus 385 vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 385 VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 334678999999999999999999999999999887653211 1567899999999999999986543222222
Q ss_pred -hCCCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCC
Q 003722 77 -ICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIP 155 (800)
Q Consensus 77 -IcP~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (800)
++..+-.++.|....|++.+.|-+-|-|-...-.++.+-..
T Consensus 465 v~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~-------------------------------------- 506 (885)
T KOG2023|consen 465 VVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE-------------------------------------- 506 (885)
T ss_pred HhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--------------------------------------
Confidence 23345566677777888888889999888777666554210
Q ss_pred CCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhh---hhhccCCChHHHHHHHHHH
Q 003722 156 SRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCT---SPLLWSHNSAVVLAAAGVH 232 (800)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~---~pLL~S~NsAVVlaaa~~~ 232 (800)
.+++ +=|-+.-+|+.+ ...-|++|--+++-|+.++
T Consensus 507 ---A~~e---------------------------------------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtl 544 (885)
T KOG2023|consen 507 ---AGEE---------------------------------------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTL 544 (885)
T ss_pred ---ccch---------------------------------------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHH
Confidence 0111 112222333333 2234789999999999876
Q ss_pred H-----hcCCHHHHHHHHHHHHH---HhcCCCcchHHHHHHHHHHHHhCCcccccccccceec---------------cC
Q 003722 233 W-----IMSPKEDVKRIVKPLLF---ILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS---------------SS 289 (800)
Q Consensus 233 ~-----~l~p~~~l~~~v~pLv~---LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~---------------~~ 289 (800)
- ++..+.+++.+..||+. +|+.+.---|-.|.++..++..-..-|.||..-.|-| ..
T Consensus 545 Adsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~ 624 (885)
T KOG2023|consen 545 ADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQ 624 (885)
T ss_pred HHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccC
Confidence 4 56678889999999984 4554333346677888888776655566653222211 12
Q ss_pred CchH------HHHHHHHHHHhhcC--CCCHHH------HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 003722 290 DSYQ------SKALKLEILSSIVT--ESSISS------VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGL 355 (800)
Q Consensus 290 Dp~~------Ik~lKLeIL~~La~--e~Nv~~------Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~L 355 (800)
||.+ .-...||++.-|+- .+.++. |++=|...+.|.-++++.-+..-+|.++...++-..-|+.-+
T Consensus 625 ~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~f 704 (885)
T KOG2023|consen 625 DPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADF 704 (885)
T ss_pred CccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 2222 12234666665542 122221 445556677888889999999999998877554444445555
Q ss_pred HHHHHhhhccccccCCCCCCchhHhHHHHHHHHHH-hCCcc---hHHHHHHHHHhhhccChhhH-H---HHHHhhhcccc
Q 003722 356 LALIRQELLTSDIESGNGEADVLIQSIISIKSIIK-QDPSC---HEKVIIQLFRSLDSIKVPEA-R---VMIIWMVGEYS 427 (800)
Q Consensus 356 L~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~-~~P~~---~~~~i~~L~~~ld~i~~p~A-r---asiiWLlGEy~ 427 (800)
+.+|-.+. +..++ .+..-++=.+-.|-. ..++. ...++..|...+..-..+.. . |--|=-+|-++
T Consensus 705 l~~lg~Nl---~~~~i----sv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~ 777 (885)
T KOG2023|consen 705 LPILGANL---NPENI----SVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC 777 (885)
T ss_pred HHHHhhcC---Chhhc----hHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC
Confidence 55554321 00111 122333333333322 22222 23344555544442222211 1 11133344443
Q ss_pred CCCCCCcchHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 003722 428 SVGVKIPRMLTTVLKYLAWCFKSE-AVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKK 506 (800)
Q Consensus 428 ~~~~~ip~i~~dvLr~l~~~F~~E-~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~ 506 (800)
.. +..|. .+.+.|.-..+...- ..+.|-....-++++.-.+|... +..+.-.+.-.|... |++ -|-.-++++
T Consensus 778 Pe-~vAp~-l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v---v~~~~f~c~aiAsw~-np~-~~l~~~f~k 850 (885)
T KOG2023|consen 778 PE-EVAPH-LDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV---VSSFIFICDAIASWS-NPE-DDLRDEFYK 850 (885)
T ss_pred HH-hcchh-HHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh---hhhhHHHHHHHhccc-ChH-HHHHHHHHH
Confidence 21 12232 334444332222221 34566666677777777777643 223333333444444 555 444456667
Q ss_pred HccC
Q 003722 507 LFSH 510 (800)
Q Consensus 507 LL~~ 510 (800)
+|..
T Consensus 851 iL~g 854 (885)
T KOG2023|consen 851 ILQG 854 (885)
T ss_pred HHHH
Confidence 7754
No 24
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.061 Score=64.34 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=43.0
Q ss_pred eecccccCCCCeeEEEEecCCCccCCCceEEEEEEEEecCCCc-eeceEeeec
Q 003722 731 YTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSET-MSEVTLVDE 782 (800)
Q Consensus 731 ~~ll~~~~g~gl~~~y~f~~~~~~~~~~~v~v~~~~~N~s~~~-~~~i~~~~~ 782 (800)
++.+......||.+...|.++|.- ++...+.++|+|.+.-+ ++.++....
T Consensus 747 ~~~~~~~dkssl~~~~~~~k~~~n--~~~t~i~~~~tn~s~~~~l~~F~~~aA 797 (866)
T KOG1062|consen 747 YPSIKAYDKSSLLVELSFTKGPSN--KKTTVITLTFTNLSPNTDLTDFHFQAA 797 (866)
T ss_pred CCcceeeecccceeeeeeccCCCC--CceeEEEeeccCCCCCcchhhhccccc
Confidence 677777888999999999999974 77889999999999777 998887653
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.17 E-value=0.09 Score=69.78 Aligned_cols=355 Identities=13% Similarity=0.095 Sum_probs=218.9
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccc
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTL 84 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~-----~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~L 84 (800)
.+..+-+.+++.++-+|+.|+.++..+-.-++ ++. ...++.|-.||...++.+.-.|+.++..+|-+. -.+
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 35666777888899999999999988876554 222 234556777899899999999999999998432 122
Q ss_pred h--hHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchh
Q 003722 85 I--GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (800)
Q Consensus 85 i--h~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (800)
+ +..+..|++.|..-+.=+|...+..|.......
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-------------------------------------------- 561 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-------------------------------------------- 561 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc--------------------------------------------
Confidence 3 245667788887776666666666665553200
Q ss_pred hhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh---cCCHH
Q 003722 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI---MSPKE 239 (800)
Q Consensus 163 ~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~---l~p~~ 239 (800)
|.+ .+..+..+|.+.++.+...+.+++-+ +....
T Consensus 562 ----------------------------------------d~~---~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 562 ----------------------------------------DAA---TISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred ----------------------------------------chh---HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 000 11334456777777766666665533 33322
Q ss_pred H-H------HHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccc-----ccc-ccceeccCCchHHHHHHHHHHHhh
Q 003722 240 D-V------KRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV-----PHY-EDFFVSSSDSYQSKALKLEILSSI 305 (800)
Q Consensus 240 ~-l------~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~-----~~l-~~Ffi~~~Dp~~Ik~lKLeIL~~L 305 (800)
. + ...+.+|+.||.+ +++++--+...|..++..+++... .-+ .......+....+++.+---|..|
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL 678 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAAL 678 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 2 1 2367788999976 467787788888888776654211 111 111122233344777777777777
Q ss_pred c---CCCCHHHH-----HHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH----HHHHHHHHHHHHhhhccccccCCCC
Q 003722 306 V---TESSISSV-----FKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESGNG 373 (800)
Q Consensus 306 a---~e~Nv~~I-----l~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a----~~~l~~LL~LL~~~~~~~~~~~~~~ 373 (800)
+ ++.|...+ +.=|...+++.|.+++..+..+++.++..-.... ...+..|+++|+.+
T Consensus 679 ~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G----------- 747 (2102)
T PLN03200 679 SRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG----------- 747 (2102)
T ss_pred HhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-----------
Confidence 6 44454443 3346677788899999999999999986543222 34578899999853
Q ss_pred CCchhHhHHHHHHHHHHhCCcch--------HHHHHHHHHhhhccC-----hhhHHHHHHhhhcc-cc-C--------CC
Q 003722 374 EADVLIQSIISIKSIIKQDPSCH--------EKVIIQLFRSLDSIK-----VPEARVMIIWMVGE-YS-S--------VG 430 (800)
Q Consensus 374 ~~~vv~E~V~vi~~Il~~~P~~~--------~~~i~~L~~~ld~i~-----~p~ArasiiWLlGE-y~-~--------~~ 430 (800)
....-..+.-.+.+|.+..|..+ ..++.-|+.+|.... ..+|.-++.|+.-- ++ + .+
T Consensus 748 ~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 827 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLA 827 (2102)
T ss_pred ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHH
Confidence 11122335556778888887432 234667777776443 23466677777652 11 1 11
Q ss_pred CCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcC
Q 003722 431 VKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (800)
Q Consensus 431 ~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p 471 (800)
+ .|.. |..++.....+.+.++--.+-...+++--.|
T Consensus 828 e-~p~~----l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 828 E-VPSS----LEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred h-ccCc----hHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 1 2333 3334444466777888777888888765444
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.16 E-value=0.21 Score=66.44 Aligned_cols=398 Identities=14% Similarity=0.137 Sum_probs=207.0
Q ss_pred HHHHHhhcCCCCchh-hHHHHHHHHHHhhcCc--h-hhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccchh
Q 003722 14 LVAVGKCARDPSVFV-RKCAANALPKLHELRQ--E-EITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLIG 86 (800)
Q Consensus 14 ~~aIkk~l~D~sPYV-RK~AA~AI~Kly~ldp--e-~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~Lih 86 (800)
..++-+.+++++|-+ ...++-|+..+|.--- . -...+-++.|-.||.-.+..+...|+.++..+|-+. +..+-
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 355667777776663 6666666655443210 0 011222334555777777899999999999999543 33222
Q ss_pred --HHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhh
Q 003722 87 --RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV 164 (800)
Q Consensus 87 --~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 164 (800)
.....|++.|..-++=.|...+..|...+.... . ++
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd----e-------nr------------------------------- 481 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD----E-------SK------------------------------- 481 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH----H-------HH-------------------------------
Confidence 246688888887777667777666665542110 0 00
Q ss_pred hhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCC-HHH---
Q 003722 165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP-KED--- 240 (800)
Q Consensus 165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p-~~~--- 240 (800)
.. +++ . -.+..+..+|.+.+..+.-+|+.++.+++. ...
T Consensus 482 ~a----Iie------------------------------a---GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 482 WA----ITA------------------------------A---GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred HH----HHH------------------------------C---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 00 000 0 012233444555555555555555554432 111
Q ss_pred -HH--HHHHHHHHHhcC-CCcchHHHHHHHHHHH----------------------------------HhCCc--cccc-
Q 003722 241 -VK--RIVKPLLFILRS-SGASKYVVLCNIQVFA----------------------------------KALPH--LFVP- 279 (800)
Q Consensus 241 -l~--~~v~pLv~LL~s-~~ei~yvvL~~I~~L~----------------------------------~~~p~--lF~~- 279 (800)
+. .++.||+.+|.+ ++++|-.++..|..|+ ..... .+..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 11 234455555543 3444544444444443 21111 1110
Q ss_pred -----ccccce-eccCCchHHHHHHHHHHHhhcCCC--CHHH-----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc
Q 003722 280 -----HYEDFF-VSSSDSYQSKALKLEILSSIVTES--SISS-----VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (800)
Q Consensus 280 -----~l~~Ff-i~~~Dp~~Ik~lKLeIL~~La~e~--Nv~~-----Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~ 346 (800)
=+..+. +..++...+|+....+|..+++.+ ++.. ++.-|..-+.+.+.+.++++..||+.++.....
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 011111 123445567777777777776522 2222 233455556667778888888998888842221
Q ss_pred ------cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcc----hHHHHHHHHHhhhccChhhHH
Q 003722 347 ------MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEAR 416 (800)
Q Consensus 347 ------~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~----~~~~i~~L~~~ld~i~~p~Ar 416 (800)
....++..|++||+.. +..++.+++..|.+|++..... ....+..|++.+.+= .+..|
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~-----------d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k 752 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSS-----------SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGK 752 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCC-----------ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHH
Confidence 2234688899988742 2335666777777777543322 234477788877643 47788
Q ss_pred HHHHhhhccccCCCCC---Ccc------hHHHHHHHHHhhhccCcHHH--HHHHHHHHHHH----HhhcCC-----CChH
Q 003722 417 VMIIWMVGEYSSVGVK---IPR------MLTTVLKYLAWCFKSEAVET--KLQILNTTIKV----LLCAKG-----GDMW 476 (800)
Q Consensus 417 asiiWLlGEy~~~~~~---ip~------i~~dvLr~l~~~F~~E~~~V--KlqILta~aKL----~~~~p~-----e~~~ 476 (800)
...+|.+.+-|..... ++. ++..++..| +.-..+...+ =+..|...+|. -...|. |...
T Consensus 753 ~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L-~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~ 831 (2102)
T PLN03200 753 RNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLL-NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPS 831 (2102)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHH-hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccC
Confidence 8888888776643210 000 011112211 2222333333 56677777774 011111 1112
Q ss_pred HHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 003722 477 TITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (800)
Q Consensus 477 ~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL 508 (800)
.+..|.+.+ ...+|+|+|+|-....=|
T Consensus 832 ~l~~l~~~l-----~~~~p~~~~kai~il~~~ 858 (2102)
T PLN03200 832 SLEPLVRCL-----AEGHPLVQDKAIEILSRL 858 (2102)
T ss_pred chHHHHHHH-----HcCChHHHHHHHHHHHHH
Confidence 244454433 456999999998776544
No 27
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.11 Score=61.57 Aligned_cols=240 Identities=15% Similarity=0.153 Sum_probs=167.8
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhH
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR 87 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~ 87 (800)
.+.-+.+.-++|-++..+-|==--|.-|+. || .-| +...+|.+-+-+||+-+-|.|--=|+.+++.||-.--+-+.+
T Consensus 105 dvlmL~tn~~rkdl~S~n~ye~giAL~GLS-~f-vTp-dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 105 DVLMLTTNLLRKDLNSSNVYEVGLALSGLS-CI-VTP-DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred cHHHHHHHHHHHHhccCccchhhheecccc-cc-cCc-hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 455667778888888666664444444444 22 245 556667767778999999999999999999999655566889
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhh
Q 003722 88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLV 167 (800)
Q Consensus 88 ~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 167 (800)
+|-||...|.|.|+=-|-..++++-..+|.+ |.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKn-----Pk------------------------------------------ 214 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKN-----PQ------------------------------------------ 214 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhC-----Cc------------------------------------------
Confidence 9999999999999999999999988887521 10
Q ss_pred hhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHHHHH
Q 003722 168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVKRIV 245 (800)
Q Consensus 168 ~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p--~~~l~~~v 245 (800)
.|+ .+.|++..|| ..|.|.=|+.-.+++|-.++| |.--++++
T Consensus 215 ---------nyL---------------------~LAP~ffkll------ttSsNNWmLIKiiKLF~aLtplEPRLgKKLi 258 (877)
T KOG1059|consen 215 ---------NYL---------------------QLAPLFYKLL------VTSSNNWVLIKLLKLFAALTPLEPRLGKKLI 258 (877)
T ss_pred ---------ccc---------------------cccHHHHHHH------hccCCCeehHHHHHHHhhccccCchhhhhhh
Confidence 011 1334443332 357888899999999999998 34567888
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcC
Q 003722 246 KPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDP 325 (800)
Q Consensus 246 ~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~ 325 (800)
.||.-|+++.. ..-+...+|.+++.. ++-..+ .++.. .++.-+..|..|+.+.
T Consensus 259 eplt~li~sT~-AmSLlYECvNTVVa~--s~s~g~-------~d~~a-----------------siqLCvqKLr~fieds 311 (877)
T KOG1059|consen 259 EPITELMESTV-AMSLLYECVNTVVAV--SMSSGM-------SDHSA-----------------SIQLCVQKLRIFIEDS 311 (877)
T ss_pred hHHHHHHHhhH-HHHHHHHHHHHheee--hhccCC-------CCcHH-----------------HHHHHHHHHhhhhhcC
Confidence 99999997643 233456677776654 222221 11111 1233356677777788
Q ss_pred ChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722 326 DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (800)
Q Consensus 326 d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~ 360 (800)
|+.++--..-|++.++..+|+....--+.++++|.
T Consensus 312 DqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~ 346 (877)
T KOG1059|consen 312 DQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD 346 (877)
T ss_pred CccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence 88888888888888888888877777777777775
No 28
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.051 Score=64.53 Aligned_cols=64 Identities=27% Similarity=0.232 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+|-.+++|-+.+|+-|||=...-=++|+ ..| +..+.|.+.+..+|.-+.+.|-.+|+.|+.+|.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~-ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEP-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc--CcH-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 5678999999999999998877766665 345 667778888999999999999999999988885
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.82 E-value=0.0035 Score=57.26 Aligned_cols=102 Identities=20% Similarity=0.080 Sum_probs=77.8
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccch
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLI 85 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~----~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~Li 85 (800)
++..+.+.+.|.++++|+.|+.|+.++....|+. .....++.+..+|+|+++.|...|+.++..++... ...+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5667778888999999999999999999876532 12245667777899999999999999999998543 2222
Q ss_pred hH--HHHHHHHhCCCCChhhHHHHHHHHHhh
Q 003722 86 GR--NYRNLCQILPDVEEWGQILLIEILLRY 114 (800)
Q Consensus 86 h~--~yr~Lc~~L~d~dEWgQi~iL~lL~rY 114 (800)
++ ....|.+.|.+.+..-+-..+.+|...
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 32 367788888888888777777777653
No 30
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=96.81 E-value=0.039 Score=63.20 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=73.0
Q ss_pred HHHHHHhCCcchHHHHHHHHHhhhccChhh----HHHHHHhhhccccCCCCCCcchHHHHHHHHHhh----------h--
Q 003722 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPE----ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC----------F-- 448 (800)
Q Consensus 385 i~~Il~~~P~~~~~~i~~L~~~ld~i~~p~----ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~----------F-- 448 (800)
+-.+.+++|......-..|.+.+.+..... --..++|+||||+...-. ..+-.++++.+.+. .
T Consensus 292 ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d-~rct~~~i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 292 LLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYD-RRCTVEQINEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccC-CccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 445678889764444445555555443323 334678999999864321 22223333332221 1
Q ss_pred ------ccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHc-------cC--CChHHHhHHHHHHHHccCC
Q 003722 449 ------KSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE-------CD--LNYDVRDRARFFKKLFSHN 511 (800)
Q Consensus 449 ------~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~-------~D--~n~DVRDRAr~y~~LL~~~ 511 (800)
......+-.-++|+.+|+..+.++-.. ++...+..+-..+. ++ .+..|..||.+|.+||+.+
T Consensus 371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~p-Rv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~P 447 (459)
T PF14764_consen 371 DPSASRPSSQPRLMTVLMTALAKLASRSQDLIP-RVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMP 447 (459)
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCHhhhH-HHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCc
Confidence 123345667799999999999876433 33333333322111 33 3789999999999999864
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.064 Score=66.45 Aligned_cols=238 Identities=20% Similarity=0.161 Sum_probs=150.8
Q ss_pred ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh---hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCccc
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~---~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~ 83 (800)
..|.|.++..+.+.+...+++-||+|.+||.-+-.=.++. +.+.+..++-..|+|.+|-|-.+|+.|+-.+--+=-.
T Consensus 343 ~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence 4688999999999999999999999999999887766643 5566777777788999999999999999888533212
Q ss_pred chhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhh
Q 003722 84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL 163 (800)
Q Consensus 84 Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 163 (800)
.+.++++..+- ..++..+.
T Consensus 423 ~iqk~~~e~l~----------~aL~~~ld--------------------------------------------------- 441 (1075)
T KOG2171|consen 423 EIQKKHHERLP----------PALIALLD--------------------------------------------------- 441 (1075)
T ss_pred HHHHHHHHhcc----------HHHHHHhc---------------------------------------------------
Confidence 23333322110 00000000
Q ss_pred hhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc---CCHH-
Q 003722 164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM---SPKE- 239 (800)
Q Consensus 164 ~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l---~p~~- 239 (800)
...|+-|-..|+.+...+ .+.+
T Consensus 442 ------------------------------------------------------~~~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 442 ------------------------------------------------------STQNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred ------------------------------------------------------ccCchHHHHHHHHHHHHHHHhCcHHH
Confidence 011222333333333322 2222
Q ss_pred ---HHHHHHHHHH-HHhcC-CCcchHHHHHHHHHHHHhCCcccccccc-------cceeccC--CchHHHHHHHHHHHhh
Q 003722 240 ---DVKRIVKPLL-FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYE-------DFFVSSS--DSYQSKALKLEILSSI 305 (800)
Q Consensus 240 ---~l~~~v~pLv-~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~-------~Ffi~~~--Dp~~Ik~lKLeIL~~L 305 (800)
++..+..+++ .|+.+ ++.+|--++..|..++...-..|.||+. +|....+ |-.-.|-+.+|-+..+
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 3455555443 44443 5788999999999998887777887653 3333334 3457777778888888
Q ss_pred cCCCC---HHHHHHHHHHh-------hhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHH
Q 003722 306 VTESS---ISSVFKEFQDY-------IRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359 (800)
Q Consensus 306 a~e~N---v~~Il~EL~~Y-------v~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL 359 (800)
+..-+ +...-.|+..- ..+.|+-.....+.+++++|.-+-+....++...+..+
T Consensus 548 ~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl 611 (1075)
T KOG2171|consen 548 ARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPL 611 (1075)
T ss_pred HHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHH
Confidence 76443 33333333321 23445567888999999999888776667776665544
No 32
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.67 E-value=0.18 Score=61.27 Aligned_cols=97 Identities=23% Similarity=0.185 Sum_probs=68.5
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHH-HH
Q 003722 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN-YR 90 (800)
Q Consensus 12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~-yr 90 (800)
+.+..++|-+.|++||+|=+|.-.+.++ -.+ +..+.+..-|.++|.|+++.|-.+|+.|+..+..-.-++.|.. .-
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l--~~~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLL--RVK-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc--ChH-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 5677899999999999999999988866 233 5667788889999999999999999999988864333444433 22
Q ss_pred H-HHHhCCCCChhhHHHHHHHH
Q 003722 91 N-LCQILPDVEEWGQILLIEIL 111 (800)
Q Consensus 91 ~-Lc~~L~d~dEWgQi~iL~lL 111 (800)
. +-.++.|-|+=--.-.+-.|
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 169 DILKELVADSDPIVIANALASL 190 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHH
Confidence 2 22334466664433333333
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.64 E-value=0.0082 Score=52.49 Aligned_cols=84 Identities=30% Similarity=0.214 Sum_probs=60.1
Q ss_pred HHHHhhc-CCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHH
Q 003722 15 VAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC 93 (800)
Q Consensus 15 ~aIkk~l-~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc 93 (800)
..+.+.+ +|++|+||..|+.++.++ .. +...+.|..+++|.++.|..+|+.++..+- -......|+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~ 68 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALI 68 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHH
Confidence 3455555 899999999999999943 22 345666667889999999999999999883 133556777
Q ss_pred HhCCCCChhh-HHHHHHHH
Q 003722 94 QILPDVEEWG-QILLIEIL 111 (800)
Q Consensus 94 ~~L~d~dEWg-Qi~iL~lL 111 (800)
+.+.+-+.|. +-..+..|
T Consensus 69 ~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhc
Confidence 7777766555 55555444
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=1 Score=52.50 Aligned_cols=289 Identities=18% Similarity=0.162 Sum_probs=174.8
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCch---hhHHHHHHHHHHHhcCCCccHHHHHHH---HHHHhCCCcc-
Q 003722 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAA---AFASICPNNF- 82 (800)
Q Consensus 10 ~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe---~~~~~L~~~l~~LL~D~dp~Vv~aAl~---Af~eIcP~~~- 82 (800)
.+-++++|-.|..|..--||=-|+-++..+-+.... ...+.+.+.+.++-.|++..|-++|=. .+.+|.-++-
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 445677888999999999999888776555444321 256778888999999999999987743 2444443321
Q ss_pred cchhHHHHHHH-HhCCCCChhhHHHHHHHHHhhhhhcccccchh-hhhhhhhhccCCCcccccccccccccCCCCCCCcc
Q 003722 83 TLIGRNYRNLC-QILPDVEEWGQILLIEILLRYVVASHGLVKES-IMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD 160 (800)
Q Consensus 83 ~Lih~~yr~Lc-~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (800)
.+--+.|--|+ ..|-..++...++++.-|...-.. |. .|+. +.
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~------P~~~m~~-yl---------------------------- 206 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV------PDLEMIS-YL---------------------------- 206 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC------CcHHHHh-cc----------------------------
Confidence 22112222222 335556777877777776543210 11 1111 00
Q ss_pred hhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh------
Q 003722 161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI------ 234 (800)
Q Consensus 161 ~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~------ 234 (800)
--|++-+...|.-.+..|.--+-.+...
T Consensus 207 ----------------------------------------------~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 207 ----------------------------------------------PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred ----------------------------------------------hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 0122222333333333333211111111
Q ss_pred cCCHH-HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCcccccccccce-----eccCCch-HHHHHHHH---HHH
Q 003722 235 MSPKE-DVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-----VSSSDSY-QSKALKLE---ILS 303 (800)
Q Consensus 235 l~p~~-~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ff-----i~~~Dp~-~Ik~lKLe---IL~ 303 (800)
-.|.. ...+.+..|+.-+. +.+++|-.+|..|..++...|..+-+++...+ |..+++. .||..+-. .|.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 11222 45667777776664 56999999999999999999988888875433 2333343 56665543 356
Q ss_pred hhcCCCCH------HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc----cHHHHHHHHHHHHHhhhccccccCCCC
Q 003722 304 SIVTESSI------SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK----MANTCVEGLLALIRQELLTSDIESGNG 373 (800)
Q Consensus 304 ~La~e~Nv------~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~----~a~~~l~~LL~LL~~~~~~~~~~~~~~ 373 (800)
+++.+.-- ..|++=|..|+.+...+-+..+..-|..+-.+.|. ..+.+..+|++-|+. .
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd-----------~ 389 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD-----------R 389 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC-----------c
Confidence 66654433 38999999999998888888888999888888886 334555566665542 1
Q ss_pred CCchhHhHHHHHHHHHH
Q 003722 374 EADVLIQSIISIKSIIK 390 (800)
Q Consensus 374 ~~~vv~E~V~vi~~Il~ 390 (800)
...||-.++.++..|..
T Consensus 390 sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 390 SDEVVLLALSLLASICS 406 (675)
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 23355556666666654
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.3 Score=57.64 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=56.7
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~ 81 (800)
.+..++-..+-+++.|.+|.+|-+.-+-|.-+....--..-+++.+.|..||.-.+..+.-.|+.|+..||.+.
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhh
Confidence 45667777778899999999999888777776655321245677777888888888778888999999999775
No 36
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.50 E-value=2.7 Score=50.60 Aligned_cols=455 Identities=16% Similarity=0.146 Sum_probs=238.1
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc-CchhhHHHHHHHHHH---HhcCCCccHHHHHHHHHHHhCCCcccc--
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGI---LLNDRSPGVVGAAAAAFASICPNNFTL-- 84 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~~L~~~l~~---LL~D~dp~Vv~aAl~Af~eIcP~~~~L-- 84 (800)
--++..|.+|+.|.+-.||-.+|+|+.-++.. .| --.+++..+++- =.+-+---++++-+.|.--+||..=.-
T Consensus 552 ~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P-ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya 630 (1172)
T KOG0213|consen 552 KPLVKIIEHGLKDEQQKVRTITALALSALAEAATP-YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA 630 (1172)
T ss_pred HHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH
Confidence 44678999999999999999999999999987 45 444455554443 234455567777788888899864111
Q ss_pred ---hhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchh-hh-------hh-hhhhccCCCccc----ccccccc
Q 003722 85 ---IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES-IM-------SS-LLCIESSHSEKD----VFDVNVA 148 (800)
Q Consensus 85 ---ih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~-~~-------f~-~~~~~~~~~~~~----~~~~~~~ 148 (800)
.......|.+-....||=..-.+|.++.+.|- ..+ +.|. +. |. .-+++. ..+.. --+.+..
T Consensus 631 ~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~-t~G-v~~~y~r~dilp~ff~~fw~rrm-A~drr~ykqlv~ttv~ 707 (1172)
T KOG0213|consen 631 SYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCA-TDG-VEPAYIRFDILPEFFFSFWGRRM-ALDRRNYKQLVDTTVE 707 (1172)
T ss_pred HHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhc-ccC-CCHHHHhhhhhHHHHhhhhhhhh-hccccchhhHHHHHHH
Confidence 12223345555566788888889999988874 222 2222 11 11 001100 00000 0000000
Q ss_pred cccCCCCCCCcchhhhhhhhhhhhcccccccccCCCcccccccccc-------ccccCCCCCh-hHHHHHHhhhhhccCC
Q 003722 149 LEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNG-------ARFTSGKTND-DVKLLLQCTSPLLWSH 220 (800)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~-------~~~~~~~~d~-Dl~lLL~~~~pLL~S~ 220 (800)
+-.+.+ ...++++...+ +. |+...+.+... ..--...+|. -.++|++.+.--||+.
T Consensus 708 ia~KvG--------~~~~v~R~v~~----lk----de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeq 771 (1172)
T KOG0213|consen 708 IAAKVG--------SDPIVSRVVLD----LK----DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQ 771 (1172)
T ss_pred HHHHhC--------chHHHHHHhhh----hc----cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhc
Confidence 000000 00111111100 00 00000000000 0000012333 3467899998888876
Q ss_pred Ch--HHHHHHHHHHHh-cCC--HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC----cccccccccc-e--ec
Q 003722 221 NS--AVVLAAAGVHWI-MSP--KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP----HLFVPHYEDF-F--VS 287 (800)
Q Consensus 221 Ns--AVVlaaa~~~~~-l~p--~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p----~lF~~~l~~F-f--i~ 287 (800)
.. +|++-+..+... +.. ..++..++...+-.|++ ++.++.-+++.|..|+..-. .-.-.|+... | +-
T Consensus 772 tt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 772 TTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG 851 (1172)
T ss_pred ccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC
Confidence 64 566655544332 222 23466677777777765 78999989888877764322 1122344322 2 11
Q ss_pred cCCchHHHHHHHHHHHhhcCC-------CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH--HHHHHH---H
Q 003722 288 SSDSYQSKALKLEILSSIVTE-------SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA--NTCVEG---L 355 (800)
Q Consensus 288 ~~Dp~~Ik~lKLeIL~~La~e-------~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a--~~~l~~---L 355 (800)
-.+|. +----|.-|+.++|- .-+..|+.-|.--+++-...++...|.-+|++|.+-|+.. .--+++ |
T Consensus 852 eeypE-vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeL 930 (1172)
T KOG0213|consen 852 EEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFEL 930 (1172)
T ss_pred cccHH-HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Confidence 23343 433344445555443 3578888888888888888899999999999999988632 112333 4
Q ss_pred HHHHHhhhccccccCCCCCCchhH-hHHHHHHHHHHh-CCcchHHHHHHHHHhhhccChhhHH--H-HHHhhhccccCCC
Q 003722 356 LALIRQELLTSDIESGNGEADVLI-QSIISIKSIIKQ-DPSCHEKVIIQLFRSLDSIKVPEAR--V-MIIWMVGEYSSVG 430 (800)
Q Consensus 356 L~LL~~~~~~~~~~~~~~~~~vv~-E~V~vi~~Il~~-~P~~~~~~i~~L~~~ld~i~~p~Ar--a-siiWLlGEy~~~~ 430 (800)
+++|..- ...+. -++..+--|-+- .| ..++..|...|.. ++-.-| . ..|-|+||||..-
T Consensus 931 lelLkah------------kK~iRRaa~nTfG~IakaIGP---qdVLatLlnnLkv-qeRq~RvcTtvaIaIVaE~c~pF 994 (1172)
T KOG0213|consen 931 LELLKAH------------KKEIRRAAVNTFGYIAKAIGP---QDVLATLLNNLKV-QERQNRVCTTVAIAIVAETCGPF 994 (1172)
T ss_pred HHHHHHH------------HHHHHHHHHhhhhHHHHhcCH---HHHHHHHHhcchH-HHHHhchhhhhhhhhhhhhcCch
Confidence 4444321 00111 112122111111 23 2344444444431 122222 2 2268999999632
Q ss_pred CCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 003722 431 VKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (800)
Q Consensus 431 ~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~ 510 (800)
.+|--+.+.|..-...||--+|.+++-+|-+-.+...+-+..+. =+|+=|..|.|+==|+-|--.-+=+..
T Consensus 995 --------tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~-PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 995 --------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVT-PLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred --------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhh-HHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 23444556787777889999999998776544321111111111 134556677777777766655444443
Q ss_pred C
Q 003722 511 N 511 (800)
Q Consensus 511 ~ 511 (800)
+
T Consensus 1066 g 1066 (1172)
T KOG0213|consen 1066 G 1066 (1172)
T ss_pred C
Confidence 3
No 37
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.29 E-value=0.072 Score=53.80 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=82.2
Q ss_pred CcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHHHHHHHHhhcCCCCH---HHHHHHHHHhhhcCChhHHH
Q 003722 256 GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSI---SSVFKEFQDYIRDPDRRFAA 331 (800)
Q Consensus 256 ~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~lKLeIL~~La~e~Nv---~~Il~EL~~Yv~~~d~~f~~ 331 (800)
|.+|--++-.+.-|+.++|.++.+|...+|-+..|+ ..||+..|-+|+.|..++-+ ..++.++...+.|.|.+++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHH
Confidence 567778888899999999999999999888776665 79999999999999988765 36668888899999999999
Q ss_pred HHHHHHHHHHhh-CCccHHHHHH
Q 003722 332 DTVAAIGLCARK-LPKMANTCVE 353 (800)
Q Consensus 332 ~aI~aIg~lA~k-~p~~a~~~l~ 353 (800)
.|...+..++.+ .|.....++-
T Consensus 82 ~A~~~~~e~~~~~~~~~i~~~~~ 104 (178)
T PF12717_consen 82 LARSFFSELLKKRNPNIIYNNFP 104 (178)
T ss_pred HHHHHHHHHHHhccchHHHHHHH
Confidence 999999999998 6665544333
No 38
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.29 E-value=0.33 Score=59.23 Aligned_cols=170 Identities=15% Similarity=0.232 Sum_probs=109.5
Q ss_pred ChhHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhhhcccc---------c------cCCCC---CCchhHhHHHHHH
Q 003722 326 DRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSD---------I------ESGNG---EADVLIQSIISIK 386 (800)
Q Consensus 326 d~~f~~~aI~aIg~lA~k~p-~~a~~~l~~LL~LL~~~~~~~~---------~------~~~~~---~~~vv~E~V~vi~ 386 (800)
+..+..+-+.++|.|++-+| ......+..|+.-+..+.++.+ . ..+.+ ...+=+++|+.+.
T Consensus 877 ~~~l~~~y~v~~~~~~ql~P~ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTla 956 (1529)
T KOG0413|consen 877 ERLLCTAYNVAFSYSPQLVPHARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLA 956 (1529)
T ss_pred HHHHHHHhhccccccceeccchhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHH
Confidence 33444444556778998888 3344445555443332222210 0 00000 0012234556677
Q ss_pred HHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Q 003722 387 SIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (800)
Q Consensus 387 ~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL 466 (800)
.++-.+....++.+..|++-|+..+....|..++-.+|.+|... .-+...++-.++.+..+-...||-|.+.++++|
T Consensus 957 kmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y---Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rL 1033 (1529)
T KOG0413|consen 957 KMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY---TAMTDRYIPMIAASLCDPSVIVRRQTIILLARL 1033 (1529)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH---HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 77777777777788889998888888889999999999988421 013344455566777888899999999999999
Q ss_pred Hhhc----CCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 003722 467 LLCA----KGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKK 506 (800)
Q Consensus 467 ~~~~----p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~ 506 (800)
.-+. .++ .++++++.+ -|.+.|||.=|-||..
T Consensus 1034 Lq~~~vKw~G~------Lf~Rf~l~l--~D~~edIr~~a~f~~~ 1069 (1529)
T KOG0413|consen 1034 LQFGIVKWNGE------LFIRFMLAL--LDANEDIRNDAKFYIS 1069 (1529)
T ss_pred Hhhhhhhcchh------hHHHHHHHH--cccCHHHHHHHHHHHH
Confidence 6432 331 366666554 8999999999999965
No 39
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.21 E-value=0.0052 Score=44.04 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhh
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHE 41 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ 41 (800)
+++.+.+++.|++|-||++|+.|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999875
No 40
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.00 E-value=2.5 Score=51.73 Aligned_cols=360 Identities=14% Similarity=0.165 Sum_probs=200.7
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccchhH-HHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhh
Q 003722 52 EEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLIGR-NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIM 127 (800)
Q Consensus 52 ~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~Lih~-~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~ 127 (800)
...+..+++.++ .++..|+..|.++.-+. ..+..+ .+..|++.|..-++=.++.++.+|.+.+...
T Consensus 252 ~kk~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--------- 321 (708)
T PF05804_consen 252 LKKLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--------- 321 (708)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH---------
Confidence 345566666555 57778889898887542 222222 3456777776666656676777777765311
Q ss_pred hhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHH
Q 003722 128 SSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVK 207 (800)
Q Consensus 128 f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~ 207 (800)
.|++ .|.. .
T Consensus 322 ---ENK~------------------------------~m~~--------------------------------------~ 330 (708)
T PF05804_consen 322 ---ENKD------------------------------EMAE--------------------------------------S 330 (708)
T ss_pred ---HHHH------------------------------HHHH--------------------------------------c
Confidence 0110 0100 0
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH----HH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHh--CCcccc-
Q 003722 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED----VK--RIVKPLLFILRSSGASKYVVLCNIQVFAKA--LPHLFV- 278 (800)
Q Consensus 208 lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~----l~--~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~--~p~lF~- 278 (800)
-++..+..+|++.|.-++-.+.+++++++-... +- .++.+|+.||.. ++.+.+++..+..|+.. ...+|.
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-~~~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-PNFREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-CchHHHHHHHHHHhccCHhhHHHHhh
Confidence 145567778889999999999999999975332 22 256788888875 56778888888888753 223444
Q ss_pred ----cccccceeccCCchHHHHHHHHHHHhhc-CCCCHHHHHH-----HHHHhhhcCChhHHHHHHHHHHHHHhhCCccH
Q 003722 279 ----PHYEDFFVSSSDSYQSKALKLEILSSIV-TESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMA 348 (800)
Q Consensus 279 ----~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La-~e~Nv~~Il~-----EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a 348 (800)
|.+-.+.....++ .+...-+-++..|+ ++.|++.+.+ -|...+....+.+.-+.||.| ++.-+..-
T Consensus 410 TdcIp~L~~~Ll~~~~~-~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi---S~h~~~~k 485 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEE-EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI---SQHDGPLK 485 (708)
T ss_pred cchHHHHHHHHHhCCCc-cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH---HhcCchHH
Confidence 2332232222332 35545567777776 4667766654 233333332223333444444 44433333
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHH------HHHHHHhhhc-cChhhHHHHHHh
Q 003722 349 NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV------IIQLFRSLDS-IKVPEARVMIIW 421 (800)
Q Consensus 349 ~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~------i~~L~~~ld~-i~~p~ArasiiW 421 (800)
...++++.+|+..- .. ..+..++.|++-.+.++-..+. ....+ +..|.+.+.. ..+++..--++=
T Consensus 486 ~~f~~~i~~L~~~v--~~-----~~~ee~~vE~LGiLaNL~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 486 ELFVDFIGDLAKIV--SS-----GDSEEFVVECLGILANLTIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred HHHHHHHHHHHHHh--hc-----CCcHHHHHHHHHHHHhcccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 34445555444320 00 1133478888776666633221 22333 3333333321 233444444455
Q ss_pred hhccccCCCC---C--CcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHH---HHHHHHHHHHHccCC
Q 003722 422 MVGEYSSVGV---K--IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI---TRLFSYLLELAECDL 493 (800)
Q Consensus 422 LlGEy~~~~~---~--ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l---~~L~q~vl~la~~D~ 493 (800)
++|--+..-. . -..+++.++..| +=.+|+.+.-+||+-++-++..+.+. .+.+ ..+..|++.+ ..|.
T Consensus 558 ~~gtla~d~~~A~lL~~sgli~~Li~LL--~~kqeDdE~VlQil~~f~~ll~h~~t--r~~ll~~~~~~~ylidL-~~d~ 632 (708)
T PF05804_consen 558 LLGTLASDPECAPLLAKSGLIPTLIELL--NAKQEDDEIVLQILYVFYQLLFHEET--REVLLKETEIPAYLIDL-MHDK 632 (708)
T ss_pred HHHHHHCCHHHHHHHHhCChHHHHHHHH--HhhCchHHHHHHHHHHHHHHHcChHH--HHHHHhccchHHHHHHH-hcCC
Confidence 5665432100 0 011233333333 22477888999999999999887543 1111 2366788887 5899
Q ss_pred ChHHHhHHHHHHHHccC
Q 003722 494 NYDVRDRARFFKKLFSH 510 (800)
Q Consensus 494 n~DVRDRAr~y~~LL~~ 510 (800)
|.+||.=|-.-.-++..
T Consensus 633 N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 633 NAEIRKVCDNALDIIAE 649 (708)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999988877777653
No 41
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.98 E-value=0.95 Score=54.18 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=183.4
Q ss_pred CcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc---Cchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 3 sIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l---dpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+.|+.--+|.++..|.+-++.++|-||-.||--|..+-.. ..++ ....+--+|..-|....|-|+|+.+.|+..|+
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999887766554 3322 33445556667788899999999988888775
Q ss_pred CCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCC
Q 003722 79 PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (800)
Q Consensus 79 P~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (800)
-- +.+ ++ ||+
T Consensus 870 nv---------------------------igm-~k-------------m~p----------------------------- 879 (1172)
T KOG0213|consen 870 NV---------------------------IGM-TK-------------MTP----------------------------- 879 (1172)
T ss_pred Hh---------------------------ccc-cc-------------cCC-----------------------------
Confidence 21 000 00 000
Q ss_pred cchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC--
Q 003722 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS-- 236 (800)
Q Consensus 159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~-- 236 (800)
=...||-++.|.|+++..-|+-.|+.+.-.++
T Consensus 880 ----------------------------------------------Pi~dllPrltPILknrheKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 880 ----------------------------------------------PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR 913 (1172)
T ss_pred ----------------------------------------------ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 01124555666777776666666665432221
Q ss_pred -C----HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCC
Q 003722 237 -P----KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESS 310 (800)
Q Consensus 237 -p----~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~N 310 (800)
| ..+.-|+.--|+-+|.+ ..+++-.+...+--|+. .--
T Consensus 914 gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak------------------------------------aIG 957 (1172)
T KOG0213|consen 914 GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK------------------------------------AIG 957 (1172)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH------------------------------------hcC
Confidence 1 22344455555555543 34555554444433332 222
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHh-HHHHHHHHH
Q 003722 311 ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSII 389 (800)
Q Consensus 311 v~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E-~V~vi~~Il 389 (800)
-++||.-|..-++..+.+.+.-+-.||+.+|+.-... .+|-.|+. . |-..+ ..|.+ .+..++.+.
T Consensus 958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--tVLPalmn---e--------YrtPe-~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF--TVLPALMN---E--------YRTPE-ANVQNGVLKALSFMF 1023 (1172)
T ss_pred HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch--hhhHHHHh---h--------ccCch-hHHHHhHHHHHHHHH
Confidence 2344555555555556666666677888777754433 23333333 1 11111 12333 223455554
Q ss_pred HhCCcchHHHHHHHHHhhhc-cC--h----hhHHHHHH-hhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHH
Q 003722 390 KQDPSCHEKVIIQLFRSLDS-IK--V----PEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILN 461 (800)
Q Consensus 390 ~~~P~~~~~~i~~L~~~ld~-i~--~----p~Arasii-WLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILt 461 (800)
+.--+.-.+.|..+...|++ +. + ..|-..|- -.+|-||...+ ..+-.+|+++-.+..+.++-|...++-
T Consensus 1024 eyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~e---da~iHLLN~iWpNIle~sPhviqa~~e 1100 (1172)
T KOG0213|consen 1024 EYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCE---DALIHLLNLIWPNILETSPHVIQAFDE 1100 (1172)
T ss_pred HHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcH---HHHHHHHHHhhhhhcCCChHHHHHHHH
Confidence 43322222333333333322 11 1 12322222 35676654322 234567888888888888888888877
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 003722 462 TTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFK 505 (800)
Q Consensus 462 a~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~ 505 (800)
++=-+-..... ..+++|+++ +.+...--||+|-.-.+
T Consensus 1101 ~~eg~r~~Lg~------~~~~~Y~~Q-GLFHParkVR~~yw~vy 1137 (1172)
T KOG0213|consen 1101 AMEGLRVALGP------QAMLKYCLQ-GLFHPARKVRKRYWTVY 1137 (1172)
T ss_pred HHHHHHHHhch------HHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 76655443322 468888876 56888888999844333
No 42
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.97 E-value=0.29 Score=52.50 Aligned_cols=170 Identities=19% Similarity=0.167 Sum_probs=113.5
Q ss_pred hhcC-CCCchhhHHHHHHHHHHhhc--Cchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC--cccchhHHHHHH
Q 003722 19 KCAR-DPSVFVRKCAANALPKLHEL--RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYRNL 92 (800)
Q Consensus 19 k~l~-D~sPYVRK~AA~AI~Kly~l--dpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~--~~~Lih~~yr~L 92 (800)
..+. ...|+++..|..+++++-.. ..+- ..-..+.++..+|.+++|.|--.|+.|+..+..+ +-..|.-+..++
T Consensus 19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 19 CLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred HHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 3444 45799999999999986333 2211 1123466788999999999999999999988754 344566677888
Q ss_pred HHhCCC--CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhh
Q 003722 93 CQILPD--VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (800)
Q Consensus 93 c~~L~d--~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (800)
|+.+.. +|.-.|...|++|+....+++. . .+
T Consensus 99 c~~~~s~~lns~~Q~agLrlL~nLtv~~~~------------~-------------------------------~~---- 131 (254)
T PF04826_consen 99 CEETVSSPLNSEVQLAGLRLLTNLTVTNDY------------H-------------------------------HM---- 131 (254)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHccCCCcch------------h-------------------------------hh----
Confidence 886554 5778899999999987632110 0 00
Q ss_pred hhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH-H-----HHH
Q 003722 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED-V-----KRI 244 (800)
Q Consensus 171 ~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~-l-----~~~ 244 (800)
+...+..+.+||.+.|.-+-..+.+++++++.... . .++
T Consensus 132 -----------------------------------l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~ 176 (254)
T PF04826_consen 132 -----------------------------------LANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQV 176 (254)
T ss_pred -----------------------------------HHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence 11123445578888888898999999999875322 2 224
Q ss_pred HHHHHHHhcC--CCcchHHHHHHHHHHH
Q 003722 245 VKPLLFILRS--SGASKYVVLCNIQVFA 270 (800)
Q Consensus 245 v~pLv~LL~s--~~ei~yvvL~~I~~L~ 270 (800)
...++.|+.+ +.++-.-+|.-+.-|.
T Consensus 177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 177 LSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred hhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 5567788764 3555555555555553
No 43
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.79 E-value=1 Score=54.86 Aligned_cols=289 Identities=19% Similarity=0.247 Sum_probs=158.0
Q ss_pred ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc--Cchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc--
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL--RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-- 81 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l--dpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~-- 81 (800)
..|+++++ +++...+.-+.=.|+-.+-|+--. +.+. -...+++.|.+|+.-.+..++-.|+.++..+.=+.
T Consensus 289 ~~iV~~Lv----~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 289 KGIVSLLV----KCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred cCCHHHHH----HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 34445444 555555666655555555554322 2211 23346667778887777888888999999886331
Q ss_pred -ccchh-HHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCc
Q 003722 82 -FTLIG-RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTY 159 (800)
Q Consensus 82 -~~Lih-~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 159 (800)
-.++. +.+-+|+.+|.+ +.+.+ +++.+|...+...++ | .||.. +
T Consensus 365 R~~mV~~GlIPkLv~LL~d-~~~~~-val~iLy~LS~dd~~--r--~~f~~----------------------------T 410 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKD-PNFRE-VALKILYNLSMDDEA--R--SMFAY----------------------------T 410 (708)
T ss_pred HHHHHHCCCcHHHHHHhCC-CchHH-HHHHHHHHhccCHhh--H--HHHhh----------------------------c
Confidence 22221 234577777765 34444 477777666532110 0 11110 0
Q ss_pred chhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHH
Q 003722 160 DSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239 (800)
Q Consensus 160 ~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~ 239 (800)
+ + +..+++. ++.+.+..|-.+++.+.++|+...
T Consensus 411 d-----------------c---------------------------Ip~L~~~---Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 411 D-----------------C---------------------------IPQLMQM---LLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred c-----------------h---------------------------HHHHHHH---HHhCCCccccHHHHHHHHHHhcCH
Confidence 0 0 1112221 233444445455555555554321
Q ss_pred ----HHH--HHHHHHHHH-hcCCCcchHHHHHHHHHHHHhCC---cccccccccce--eccCCchHHHHHHHHHHHhhcC
Q 003722 240 ----DVK--RIVKPLLFI-LRSSGASKYVVLCNIQVFAKALP---HLFVPHYEDFF--VSSSDSYQSKALKLEILSSIVT 307 (800)
Q Consensus 240 ----~l~--~~v~pLv~L-L~s~~ei~yvvL~~I~~L~~~~p---~lF~~~l~~Ff--i~~~Dp~~Ik~lKLeIL~~La~ 307 (800)
.+- +-.+.|+.. ++.. --+.+..|.-|++..+ ..|.+|+..+- +...|+......-|-+|..|+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~---D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTR---DPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcc---cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 111 112233322 2221 1234455555555443 36777765432 4455666666677777777764
Q ss_pred C-CCHHHHHHH--HHHhhh------cCChhHHHHHHHHHHHHHhhCCccHH-----HHHHHHHHHHHhhhccccccCCCC
Q 003722 308 E-SSISSVFKE--FQDYIR------DPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNG 373 (800)
Q Consensus 308 e-~Nv~~Il~E--L~~Yv~------~~d~~f~~~aI~aIg~lA~k~p~~a~-----~~l~~LL~LL~~~~~~~~~~~~~~ 373 (800)
+ -+...++++ |..|+. ..+++++-++|..+|.+|. .+..+. .++..|+.||+.. ..
T Consensus 521 ~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~k---------qe 590 (708)
T PF05804_consen 521 PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAK---------QE 590 (708)
T ss_pred CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhh---------Cc
Confidence 4 378888876 444543 2466899999999999884 455444 3478899998742 11
Q ss_pred CCchhHhHHHHHHHHHHhCC
Q 003722 374 EADVLIQSIISIKSIIKQDP 393 (800)
Q Consensus 374 ~~~vv~E~V~vi~~Il~~~P 393 (800)
+...|.|.+-++-+++...+
T Consensus 591 DdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 591 DDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred hHHHHHHHHHHHHHHHcChH
Confidence 34578888878888876643
No 44
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.78 E-value=0.016 Score=46.75 Aligned_cols=52 Identities=33% Similarity=0.226 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHHHhhcCchh---hHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q 003722 26 VFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASI 77 (800)
Q Consensus 26 PYVRK~AA~AI~Kly~ldpe~---~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eI 77 (800)
|.||+.|+.||..+-...++. ..+.+.+.|..+|.|.++.|-.+|+.|+-+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999766555432 5567788888899999999999999998654
No 45
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.73 E-value=0.48 Score=57.97 Aligned_cols=173 Identities=12% Similarity=0.167 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhhcCCh--hHHHHHHHHHHHHHhhC----CccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHH
Q 003722 311 ISSVFKEFQDYIRDPDR--RFAADTVAAIGLCARKL----PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (800)
Q Consensus 311 v~~Il~EL~~Yv~~~d~--~f~~~aI~aIg~lA~k~----p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~v 384 (800)
++.|+..|..|+.-... .+..+...-++..-.|+ |......+..++.-+.+. ...+-.-+|..
T Consensus 129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~-----------R~aVrKkai~~ 197 (1233)
T KOG1824|consen 129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSP-----------RLAVRKKAITA 197 (1233)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccCh-----------HHHHHHHHHHH
Confidence 46677777777764322 24455556666655555 556656666666554321 12234446666
Q ss_pred HHHHHHhC-CcchHHHHHHHHHhhhccChhhHHHHHHhhhccccC-----CCCCCcchHHHHHHHHHhhhccCcHHHHHH
Q 003722 385 IKSIIKQD-PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-----VGVKIPRMLTTVLKYLAWCFKSEAVETKLQ 458 (800)
Q Consensus 385 i~~Il~~~-P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~-----~~~~ip~i~~dvLr~l~~~F~~E~~~VKlq 458 (800)
|-++.-.. -+.+..++.+|.+-|..-..+.+....|-++|+-|. .+.+.+.+.|-+..+.-+ -..++.+.|..
T Consensus 198 l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~-~e~~dDELrE~ 276 (1233)
T KOG1824|consen 198 LGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNK-IEEDDDELREY 276 (1233)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcc-cccCcHHHHHH
Confidence 76665543 445778888888877655556666666777776542 123456666666665532 25567789999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCCh
Q 003722 459 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNY 495 (800)
Q Consensus 459 ILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~ 495 (800)
.|.++--+..++|.+..+....+.+-+++.-.||.||
T Consensus 277 ~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy 313 (1233)
T KOG1824|consen 277 CLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNY 313 (1233)
T ss_pred HHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCC
Confidence 9998888888888765443444455555555899864
No 46
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.63 Score=54.26 Aligned_cols=241 Identities=18% Similarity=0.142 Sum_probs=157.0
Q ss_pred hhc-CCCCchhhHHHHHHHHHHhhcCchhh----HHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc-----ccchhHH
Q 003722 19 KCA-RDPSVFVRKCAANALPKLHELRQEEI----TSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-----FTLIGRN 88 (800)
Q Consensus 19 k~l-~D~sPYVRK~AA~AI~Kly~ldpe~~----~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~-----~~Lih~~ 88 (800)
+|+ ++.+|-+|..||-|+.++-.-..+.. ...-..++-.||...+.-|.--|+-|+-.|.-+. +-+-+..
T Consensus 116 ~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 116 EFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGA 195 (514)
T ss_pred HHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcc
Confidence 444 58889999999999999988665321 1112345567899999999999999999997554 1223344
Q ss_pred HHHHHHhCCCCChhhHHHHHHH----HHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhh
Q 003722 89 YRNLCQILPDVEEWGQILLIEI----LLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV 164 (800)
Q Consensus 89 yr~Lc~~L~d~dEWgQi~iL~l----L~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 164 (800)
.-.|+.+|...+. +.+++- |...||.+. |.
T Consensus 196 l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~----P~--------------------------------------- 229 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN----PS--------------------------------------- 229 (514)
T ss_pred hHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC----CC---------------------------------------
Confidence 5555555555444 222222 222232110 00
Q ss_pred hhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHHHHH
Q 003722 165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDVK 242 (800)
Q Consensus 165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~--p~~~l~ 242 (800)
|. . .-+.-+|..+.-||+|..+-|.--|+-++-|++ +.+.+.
T Consensus 230 ----------P~-------------------------~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 230 ----------PP-------------------------F-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred ----------Cc-------------------------H-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 00 0 124568889999999999999988888888876 343332
Q ss_pred -----HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC--------cccccccccceeccCCchHHHHHHHHHHHhhcCC
Q 003722 243 -----RIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--------HLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (800)
Q Consensus 243 -----~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p--------~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e 308 (800)
.++.-|+.||.. ++.++--+|+.|--|+.-.- .-.-|++..++- .+....||+..-=+|..++-
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~-~s~~~~ikkEAcW~iSNItA- 351 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS-SSPKESIKKEACWTISNITA- 351 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc-cCcchhHHHHHHHHHHHhhc-
Confidence 355667888864 67888889988766553221 112234433321 12334599999999999875
Q ss_pred CCHH--------HHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 003722 309 SSIS--------SVFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (800)
Q Consensus 309 ~Nv~--------~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k 343 (800)
.|.. .++..|.+-+...+.+.+++|.-||+.++..
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 4432 3566788888888999999999999988764
No 47
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.26 E-value=14 Score=47.93 Aligned_cols=106 Identities=21% Similarity=0.282 Sum_probs=58.9
Q ss_pred CCcchH-HHHHHHHHHHHhCCcccc-ccccccee------ccCCchHHHHHHHHHHHhh----cCCCCH--HHHHHHHHH
Q 003722 255 SGASKY-VVLCNIQVFAKALPHLFV-PHYEDFFV------SSSDSYQSKALKLEILSSI----VTESSI--SSVFKEFQD 320 (800)
Q Consensus 255 ~~ei~y-vvL~~I~~L~~~~p~lF~-~~l~~Ffi------~~~Dp~~Ik~lKLeIL~~L----a~e~Nv--~~Il~EL~~ 320 (800)
..+.++ .-+..+..++..+|.+|. .|....+. .......+-..-+.||-.. .+.++. ..|=+-|..
T Consensus 1049 ~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~ 1128 (1692)
T KOG1020|consen 1049 ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLK 1128 (1692)
T ss_pred cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 345544 456678889999999998 56544432 1112223333334444332 222221 122233444
Q ss_pred hhhcCChhHHHHHHHHHHHHHhhCC---ccHHHHHHHHHHHHH
Q 003722 321 YIRDPDRRFAADTVAAIGLCARKLP---KMANTCVEGLLALIR 360 (800)
Q Consensus 321 Yv~~~d~~f~~~aI~aIg~lA~k~p---~~a~~~l~~LL~LL~ 360 (800)
-+.......+..+|-++|.+|-|+- ..+..|+..+++.|.
T Consensus 1129 ~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1129 RIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLE 1171 (1692)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 4455566677788888888888653 455566666666664
No 48
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.20 E-value=1 Score=51.63 Aligned_cols=225 Identities=14% Similarity=0.053 Sum_probs=144.2
Q ss_pred HHHHHHHHhhc-CCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHH
Q 003722 11 PLVLVAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNY 89 (800)
Q Consensus 11 ~iv~~aIkk~l-~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~y 89 (800)
|-.+..+...+ .|.++-||..|+.++... +. +...+.+...|.|.++.|-.+++.||-+|-+.. ..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------a~ 119 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ---ED----ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------AE 119 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc---CC----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------HH
Confidence 44455555566 588999999988888522 22 122344555788999999999999999986554 44
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhh
Q 003722 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR 169 (800)
Q Consensus 90 r~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 169 (800)
..|+..|.+-+++.+..++..+..-.. +|
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~------~~--------------------------------------------- 148 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH------DP--------------------------------------------- 148 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc------Ch---------------------------------------------
Confidence 578888999999999888877765210 00
Q ss_pred hhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003722 170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL 249 (800)
Q Consensus 170 ~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv 249 (800)
...+.++|++.++.|--++++++-.+..... ...|.
T Consensus 149 ----------------------------------------~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a----~~~L~ 184 (410)
T TIGR02270 149 ----------------------------------------GPALEAALTHEDALVRAAALRALGELPRRLS----ESTLR 184 (410)
T ss_pred ----------------------------------------HHHHHHHhcCCCHHHHHHHHHHHHhhccccc----hHHHH
Confidence 0235567889999999999999877765433 33455
Q ss_pred HHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChh
Q 003722 250 FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (800)
Q Consensus 250 ~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~ 328 (800)
..+.+ +++++..++..+..+-. +.... .+..|+-...-| ....-..+|...-++ .++.-|...+.+..
T Consensus 185 ~al~d~~~~VR~aA~~al~~lG~--~~A~~-~l~~~~~~~g~~--~~~~l~~~lal~~~~----~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLAGS--RLAWG-VCRRFQVLEGGP--HRQRLLVLLAVAGGP----DAQAWLRELLQAAA-- 253 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHcCC--HhHHH-HHHHHHhccCcc--HHHHHHHHHHhCCch----hHHHHHHHHhcChh--
Confidence 55654 68999999988866522 33332 233344322222 333333344443222 66666777766544
Q ss_pred HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (800)
Q Consensus 329 f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~ 360 (800)
+...++.++|.+.. |. .+.+|+.++.
T Consensus 254 vr~~a~~AlG~lg~--p~----av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGD--VE----AAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCC--cc----hHHHHHHHhc
Confidence 78888999997653 33 4555666554
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.06 E-value=0.052 Score=49.68 Aligned_cols=66 Identities=26% Similarity=0.227 Sum_probs=54.7
Q ss_pred ccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh---hHHHHHHHHHHHhcCCCccHHHHH
Q 003722 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAA 70 (800)
Q Consensus 5 Rv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~---~~~~L~~~l~~LL~D~dp~Vv~aA 70 (800)
++..-.+-++.+|-+|+.|.++=||-.|+.|+..+-+...++ ...++.+.|.+++.|.++.|-.+|
T Consensus 20 ~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 20 DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 355667788899999999999999999999999988876544 345667777889999999998877
No 50
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=7.7 Score=46.38 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhh
Q 003722 47 ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (800)
Q Consensus 47 ~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~ 115 (800)
+.+.+..-+..+.+|.|+.|-.+|+-++..+-. .+.|-.-.|.+.|+.|.|-+|=-....++++.-|+
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g 262 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG 262 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 445556546668899999999999999998864 66666667999999999999988999999998887
No 51
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.86 E-value=5.1 Score=47.41 Aligned_cols=460 Identities=17% Similarity=0.115 Sum_probs=229.4
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc-CchhhHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhCC----C
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILL---NDRSPGVVGAAAAAFASICP----N 80 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~~L~~~l~~LL---~D~dp~Vv~aAl~Af~eIcP----~ 80 (800)
=+..++.+|++|+.|.+-+||--+|+|+.-++.+ .| --.+++.+++.-|- .-+---++.+-+.|.--|.| +
T Consensus 355 hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~P-ygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~pe 433 (975)
T COG5181 355 HLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGP-YGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPE 433 (975)
T ss_pred hhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChH
Confidence 3456789999999999999999999999999987 56 45566666655332 23334455555555544443 2
Q ss_pred cc-cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchh--------hhhhhhhhccCCCccccccccccccc
Q 003722 81 NF-TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES--------IMSSLLCIESSHSEKDVFDVNVALED 151 (800)
Q Consensus 81 ~~-~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~--------~~f~~~~~~~~~~~~~~~~~~~~l~~ 151 (800)
-. .....|.+-+.+.+...||=+.-.++-++....... =..|. +.|...-.+++..+. - ..+
T Consensus 434 Ya~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~--~~tp~~lr~~v~pefF~~fw~rr~A~dr-----~--~~k 504 (975)
T COG5181 434 YACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVG--TDTPWKLRDQVSPEFFSPFWRRRSAGDR-----R--SYK 504 (975)
T ss_pred hhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccC--CCCHHHHHHhhcHHhhchHHHhhhcccc-----c--ccc
Confidence 11 112344555556666777777666666655543211 12222 122211111000000 0 001
Q ss_pred CCCCCCCcchhhhhhhhh-hhhcccccccccCCCccccccccccc-------cccCCCCCh-hHHHHHHhhhhhccCCCh
Q 003722 152 NGIPSRTYDSELVNLVSR-SYIEGLGEYLTRSSDTNARSSDLNGA-------RFTSGKTND-DVKLLLQCTSPLLWSHNS 222 (800)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~~~~~~de~~~~~~~~~~~~~~~~~~-------~~~~~~~d~-Dl~lLL~~~~pLL~S~Ns 222 (800)
|++- +....+.+..- ..++. .+++.+|...++.+.+.. .-....+|+ -.++|++++..-+|+...
T Consensus 505 ~v~~---ttvilAk~~g~~~v~~k---il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~ 578 (975)
T COG5181 505 QVVL---TTVILAKMGGDPRVSRK---ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT 578 (975)
T ss_pred eeeh---hHHHHHHHcCChHHHHH---HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc
Confidence 1100 00111222110 00000 011122222222111110 000112343 346788988888886654
Q ss_pred --HHHHHHHHHHHh-cC--CHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHH---hCCc--ccccccccceec-cCC
Q 003722 223 --AVVLAAAGVHWI-MS--PKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAK---ALPH--LFVPHYEDFFVS-SSD 290 (800)
Q Consensus 223 --AVVlaaa~~~~~-l~--p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~---~~p~--lF~~~l~~Ffi~-~~D 290 (800)
++++-|..+... +. ....+..++...+.+|++ +|+++.-+++.+..|+. .+.+ .....=...|-. -.|
T Consensus 579 t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ 658 (975)
T COG5181 579 TVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGED 658 (975)
T ss_pred cccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcc
Confidence 566654433221 11 123466777788888876 68988887776655543 2221 111111122211 122
Q ss_pred chHHHHHHHHHHHhhcC---CC----CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH---HHHHHH---HHH
Q 003722 291 SYQSKALKLEILSSIVT---ES----SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA---NTCVEG---LLA 357 (800)
Q Consensus 291 p~~Ik~lKLeIL~~La~---e~----Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a---~~~l~~---LL~ 357 (800)
-+.+----|.-++.+.+ -+ -+..|+.-|.--+++-...++...|.-+|.+|.+-|+.+ +| +++ |++
T Consensus 659 ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW-MRIcfeLvd 737 (975)
T COG5181 659 YPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW-MRICFELVD 737 (975)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH-HHHHHHHHH
Confidence 22233333444444443 33 567888888888888888899999999999999988633 23 333 344
Q ss_pred HHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHH--H-HHHhhhccccCCCCCCc
Q 003722 358 LIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEAR--V-MIIWMVGEYSSVGVKIP 434 (800)
Q Consensus 358 LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~Ar--a-siiWLlGEy~~~~~~ip 434 (800)
+|..- ... +-+ -..+.+-.|..+| .| ..++..|...|+. ++-.-| . ..|-|+||||..-
T Consensus 738 ~Lks~---nKe--iRR---~A~~tfG~Is~ai--GP---qdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cgpf---- 799 (975)
T COG5181 738 SLKSW---NKE--IRR---NATETFGCISRAI--GP---QDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCGPF---- 799 (975)
T ss_pred HHHHh---hHH--HHH---hhhhhhhhHHhhc--CH---HHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcCch----
Confidence 44320 000 000 0011111111111 22 2344455544432 122212 2 2368999999632
Q ss_pred chHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 003722 435 RMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (800)
Q Consensus 435 ~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL 508 (800)
.++-.+...|..-...||--+|.+++-+|-+-.+...+-+.-+. -+|+-|..|.|+=-|+-|--.-+=|
T Consensus 800 ----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~it-PlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 800 ----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSIT-PLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred ----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhhcccchHHHHHHHHHHHHH
Confidence 23334555788777889999999998777544321111111111 1345567788877777776544433
No 52
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=4.7 Score=48.11 Aligned_cols=90 Identities=20% Similarity=0.131 Sum_probs=68.9
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHH---HHhCC-----
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAF---ASICP----- 79 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af---~eIcP----- 79 (800)
-.-+.+...+-....|..+-||+.|+.|+..+..-.. -. ..+.....+++.|.+-.|-.+|+.++ -..||
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~-~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LS-KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc-cc-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3445666678888999999999999999999887322 22 34555667799999999999997754 45674
Q ss_pred --CcccchhHHHHHHHHhCCCC
Q 003722 80 --NNFTLIGRNYRNLCQILPDV 99 (800)
Q Consensus 80 --~~~~Lih~~yr~Lc~~L~d~ 99 (800)
++..+.-..|+++|+.+.|.
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~ 293 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDR 293 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcC
Confidence 34677888999999999873
No 53
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=12 Score=44.19 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhccChhhHHHHHH-hhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCC
Q 003722 396 HEKVIIQLFRSLDSIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGD 474 (800)
Q Consensus 396 ~~~~i~~L~~~ld~i~~p~Arasii-WLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~ 474 (800)
+..++.-|.+++..- ..++|.+++ ||+-=|......+-.....++.-+.+...+-+.+|=++.|.+.+-+......
T Consensus 334 ~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-- 410 (675)
T KOG0212|consen 334 YGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-- 410 (675)
T ss_pred hHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc--
Confidence 345666666666542 345666655 9988775432222223456777788888999999999999999988654322
Q ss_pred hHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 003722 475 MWTITRLFSYLLELAECDLNYDVRDRARFFKK 506 (800)
Q Consensus 475 ~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~ 506 (800)
. ...++++-+|++-+.| .-=++.|+-+.-|
T Consensus 411 ~-~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 411 P-NLRKFLLSLLEMFKED-TKLLEVRGNLIIR 440 (675)
T ss_pred c-cHHHHHHHHHHHHhhh-hHHHHhhhhHHHH
Confidence 1 2456677777765554 3446666655433
No 54
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.65 E-value=7 Score=45.17 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=120.6
Q ss_pred HHHHHHhhhhhccCC-ChHHHHHHHHHHHhc---CC-HHHH--HHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhCCc
Q 003722 206 VKLLLQCTSPLLWSH-NSAVVLAAAGVHWIM---SP-KEDV--KRIVKPLLFILRSS---GASKYVVLCNIQVFAKALPH 275 (800)
Q Consensus 206 l~lLL~~~~pLL~S~-NsAVVlaaa~~~~~l---~p-~~~l--~~~v~pLv~LL~s~---~ei~yvvL~~I~~L~~~~p~ 275 (800)
+..+++.+...|++. ++..+.-|++++-.+ .+ ...+ .+.+++|+.+|+.. ..++|=+|-++=.++-..+
T Consensus 141 l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~- 219 (429)
T cd00256 141 LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH- 219 (429)
T ss_pred HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-
Confidence 344556666666643 233333333444332 21 1111 23567888888753 3678888777766653222
Q ss_pred ccccccc--cceecc----CC--chHHHHHHHHHHHhhcCCCC-------H-HHHHH-HHHHhh------hcCChhHHHH
Q 003722 276 LFVPHYE--DFFVSS----SD--SYQSKALKLEILSSIVTESS-------I-SSVFK-EFQDYI------RDPDRRFAAD 332 (800)
Q Consensus 276 lF~~~l~--~Ffi~~----~D--p~~Ik~lKLeIL~~La~e~N-------v-~~Il~-EL~~Yv------~~~d~~f~~~ 332 (800)
...... .++... .+ -.-|-|..+-+|..|.+... + ..++. .+...+ +-.|.++..+
T Consensus 220 -~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~ed 298 (429)
T cd00256 220 -AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDD 298 (429)
T ss_pred -HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHH
Confidence 111111 111111 11 23566677778888887431 1 12222 222222 2356666655
Q ss_pred HHHHHHHHHhhCCc--cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhcc
Q 003722 333 TVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSI 410 (800)
Q Consensus 333 aI~aIg~lA~k~p~--~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i 410 (800)
.-.--..+..++.. ..+.|.. ++ ..+.+.-...|.+ +.+=.|-+. .+ .+..-+++++|++.++.-
T Consensus 299 l~~L~e~L~~~~k~ltsfD~Y~~---El-~sg~L~WSp~H~s--e~FW~EN~~---kf----~~~~~~llk~L~~iL~~s 365 (429)
T cd00256 299 LKFLTEELKNSVQDLSSFDEYKS---EL-RSGRLHWSPVHKS--EKFWRENAD---RL----NEKNYELLKILIHLLETS 365 (429)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH---HH-hcCCccCCCCCCC--chHHHHHHH---HH----HhcchHHHHHHHHHHhcC
Confidence 44433334433322 1122221 11 1111111223432 223233222 11 122246788999988777
Q ss_pred ChhhHHHHHHhhhccccCCCCCCcchH------HHHHHHHHhhhccCcHHHHHHHHHHHHHHHhh
Q 003722 411 KVPEARVMIIWMVGEYSSVGVKIPRML------TTVLKYLAWCFKSEAVETKLQILNTTIKVLLC 469 (800)
Q Consensus 411 ~~p~ArasiiWLlGEy~~~~~~ip~i~------~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~ 469 (800)
.+|...|....=||||+...+.--.++ ..+++ -...+.++||.+.|.+.-|+.++
T Consensus 366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~----Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR----LLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH----HhcCCCHHHHHHHHHHHHHHHHh
Confidence 788888777899999986432111111 12222 23467899999999999999764
No 55
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.63 E-value=7.1 Score=46.10 Aligned_cols=291 Identities=16% Similarity=0.131 Sum_probs=163.3
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCc---c
Q 003722 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVK-----RIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH---L 276 (800)
Q Consensus 208 lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p--~~~l~-----~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~---l 276 (800)
.+...+...|+|.++.|..-+++.+-.+.. ...+. .+...++.+|.. +.++.-.+...|..|+...+. +
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 344556677889999999888887655532 22122 244445566764 467888888888888765442 3
Q ss_pred cccc----cccceeccCCchHHHHHHHHHHHhhcCCCC--HH---H--HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC
Q 003722 277 FVPH----YEDFFVSSSDSYQSKALKLEILSSIVTESS--IS---S--VFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (800)
Q Consensus 277 F~~~----l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~N--v~---~--Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p 345 (800)
|.+. ++... ......+|.+-++++..++..+. .+ . ++..+...+.+.|.=+...++..++.+|. .+
T Consensus 157 ~~~~~~~~L~~l~--~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~ 233 (503)
T PF10508_consen 157 FDSNLLSKLKSLM--SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TP 233 (503)
T ss_pred hCcchHHHHHHHH--hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Ch
Confidence 4433 33332 22133589999999999986542 11 1 66777778888555566678899999998 45
Q ss_pred ccHH-----HHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchH----HHHHHHHHhhhccChhhHH
Q 003722 346 KMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE----KVIIQLFRSLDSIKVPEAR 416 (800)
Q Consensus 346 ~~a~-----~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~----~~i~~L~~~ld~i~~p~Ar 416 (800)
.... .+++.|.+++.... .+ . ......+.-.+..+..+....|.... ..+..|.+.++. .++.-+
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~--~d--p-~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s-~d~~~~ 307 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSE--ED--P-RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES-QDPTIR 307 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccc--cC--C-cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC-CChhHH
Confidence 4333 34556777665421 01 0 00111233334456666665555432 333344433332 244444
Q ss_pred HHHHhhhccccCCCC-------CCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH------
Q 003722 417 VMIIWMVGEYSSVGV-------KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFS------ 483 (800)
Q Consensus 417 asiiWLlGEy~~~~~-------~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q------ 483 (800)
.+.+=-+|-.|...+ .-+..+..+++.+.......+.++|.-.|++.+-++-..+....+.+..+.+
T Consensus 308 ~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence 443335555553211 1122344556666655566778999999999999975544322222222222
Q ss_pred -------HHHHHHccCCChHHHhHHHHHHHHc
Q 003722 484 -------YLLELAECDLNYDVRDRARFFKKLF 508 (800)
Q Consensus 484 -------~vl~la~~D~n~DVRDRAr~y~~LL 508 (800)
.++.+++ -.-+|+|-=|+-+++-+
T Consensus 388 ~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l 418 (503)
T PF10508_consen 388 SGSPLSNLLMSLLK-QPFPELRCAAYRLLQAL 418 (503)
T ss_pred cCCchHHHHHHHhc-CCchHHHHHHHHHHHHH
Confidence 2233332 22478887776555444
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=5.2 Score=48.42 Aligned_cols=356 Identities=14% Similarity=0.152 Sum_probs=191.8
Q ss_pred ccchHHHHHHHHh---hcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC----C
Q 003722 7 HVISPLVLVAVGK---CARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC----P 79 (800)
Q Consensus 7 ~~I~~iv~~aIkk---~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc----P 79 (800)
+.++|.++..+.| +-.|-.+-+-|+|.-|+-=+-+...++..+.+.+.++.-+...|=-=.-+|++||-.|. |
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 4677777777777 44445566677777666544444333344566677776666666566677788887763 3
Q ss_pred Ccc-cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCC
Q 003722 80 NNF-TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (800)
Q Consensus 80 ~~~-~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (800)
+++ .+.+.....+++.+.|-.-|..-..=-.|.|-+- + ++ +..
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d--~-l~-----e~~---------------------------- 441 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD--F-LP-----EAI---------------------------- 441 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh--h-ch-----hhc----------------------------
Confidence 332 3344555556666555433332222222222220 0 00 000
Q ss_pred cchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhcc--CCChHHHHHHHHHHHhcC
Q 003722 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLW--SHNSAVVLAAAGVHWIMS 236 (800)
Q Consensus 159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~--S~NsAVVlaaa~~~~~l~ 236 (800)
++. .++-..+.-+++ +..|=|.-.++..|..++
T Consensus 442 --------------------------------------------~n~-~~l~~~l~~l~~gL~DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 442 --------------------------------------------INQ-ELLQSKLSALLEGLNDEPRVASNVCWAFISLA 476 (859)
T ss_pred --------------------------------------------ccH-hhhhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Confidence 000 001111111222 234556677777666553
Q ss_pred -------C-------H-HHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHH
Q 003722 237 -------P-------K-EDVKRIVKPLLFILR----SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL 297 (800)
Q Consensus 237 -------p-------~-~~l~~~v~pLv~LL~----s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~l 297 (800)
+ . ..+..+++.|+.--. ...|.|-.+...+..|+...|+-..+-...|+ .+-..
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~-------l~il~ 549 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT-------LVILE 549 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH-------HHHHH
Confidence 1 0 246667777775442 24789999999999999888865554433331 12222
Q ss_pred HHHHHHhhcCCCCH--HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCC
Q 003722 298 KLEILSSIVTESSI--SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEA 375 (800)
Q Consensus 298 KLeIL~~La~e~Nv--~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~ 375 (800)
||+=-.. ..--+. ..=++||+.-+-. .-...+|++ +.+++.+++..+..+++++... +.
T Consensus 550 kl~q~i~-~~~l~~~dr~q~~eLQs~Lc~----~Lq~i~rk~---~~~~~~~~d~iM~lflri~~s~-----------~s 610 (859)
T KOG1241|consen 550 KLDQTIS-SQILSLADRAQLNELQSLLCN----TLQSIIRKV---GSDIREVSDQIMGLFLRIFESK-----------RS 610 (859)
T ss_pred HHHHHHH-HHhccHhhHHHHHHHHHHHHH----HHHHHHHHc---cccchhHHHHHHHHHHHHHcCC-----------cc
Confidence 2221111 000000 1122333332211 111123333 3377888889999999988642 11
Q ss_pred chh-HhHHHHHHHHHHhCCcchH----HHHHHHHHhhhccChhhHHHHHHhhhccccCCCC--CCcchHHHHHHHHHhhh
Q 003722 376 DVL-IQSIISIKSIIKQDPSCHE----KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLKYLAWCF 448 (800)
Q Consensus 376 ~vv-~E~V~vi~~Il~~~P~~~~----~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~--~ip~i~~dvLr~l~~~F 448 (800)
.++ -+++..+-.++..--..+. .....|..-+....+-...++.+=++|.-+...+ ..|+ +.++...|++..
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py-~d~~mt~Lvq~L 689 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPY-CDELMTVLVQCL 689 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHc
Confidence 233 3344455555443333333 3355566666667778888888999998875322 3465 677888888887
Q ss_pred ccC--cHHHHHHHHHHHHHHHhhc
Q 003722 449 KSE--AVETKLQILNTTIKVLLCA 470 (800)
Q Consensus 449 ~~E--~~~VKlqILta~aKL~~~~ 470 (800)
..+ +..||-+||..+.-+.+--
T Consensus 690 ss~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 690 SSPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred cCccccccccchHHHHHHHHHHHH
Confidence 765 5689999999998887643
No 57
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.32 E-value=2.5 Score=49.96 Aligned_cols=111 Identities=22% Similarity=0.178 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhh-cCchhhHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhCCCc
Q 003722 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLND--RSPGVVGAAAAAFASICPNN 81 (800)
Q Consensus 5 Rv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~-ldpe~~~~~L~~~l~~LL~D--~dp~Vv~aAl~Af~eIcP~~ 81 (800)
+-|.|+|+ ++.|-.|..|..++||.+|..|+--+-+ +.+...+..+...|..++.+ +..+.+...+-++.+..|.-
T Consensus 210 ~EPyiv~~-lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 210 FEPYIVPI-LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred CCchHHhh-HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 44555554 5677889999999999998888766554 34433555566667777777 77777777777888888887
Q ss_pred ccchh-HHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722 82 FTLIG-RNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (800)
Q Consensus 82 ~~Lih-~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~ 116 (800)
+++.- ...+.|-..|-|..+=-|-.-.+.|.+|+.
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 76643 457788888888888888888888888873
No 58
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.28 E-value=1.5 Score=47.92 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred HHHHHHH-HhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHh
Q 003722 313 SVFKEFQ-DYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (800)
Q Consensus 313 ~Il~EL~-~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~ 391 (800)
.+++.|. -.+++.+..++..+++++|.|+.-....+...+..++..++. ++..+-..++.++.+++..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-----------~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-----------DDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHH
Confidence 7777776 466788889999999999999999999999999999888743 1233444566677777766
Q ss_pred CCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcC
Q 003722 392 DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (800)
Q Consensus 392 ~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p 471 (800)
|... .++....+. + .. ....+++.+.+-+..+.++++..+...++||++...
T Consensus 95 ~g~~----------~~~~~~~~~----------~------~~--~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 95 HGID----------IFDSESDND----------E------SV--DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred cCch----------hccchhccC----------c------cc--hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 6521 112111111 1 11 134566666666667788899999999999998775
Q ss_pred CCC
Q 003722 472 GGD 474 (800)
Q Consensus 472 ~e~ 474 (800)
-..
T Consensus 147 i~~ 149 (298)
T PF12719_consen 147 ISD 149 (298)
T ss_pred CCc
Confidence 444
No 59
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.23 E-value=0.16 Score=52.79 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=92.5
Q ss_pred HHHHHHhhhhhccCCChHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccc
Q 003722 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP------KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV 278 (800)
Q Consensus 206 l~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p------~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~ 278 (800)
++.++..+...+.+.+++|+-.|+.++-.++. ...+..++.+|+..+.. ..-++-.+-..|..|+...+ +.
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~ 128 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YS 128 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H-
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cH
Confidence 34556678888999999999999887655432 13467788888888765 45678888888888888766 11
Q ss_pred ccc--ccceeccCC-chHHHHHHHHHHHhhcCCCC-----------HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhC
Q 003722 279 PHY--EDFFVSSSD-SYQSKALKLEILSSIVTESS-----------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL 344 (800)
Q Consensus 279 ~~l--~~Ffi~~~D-p~~Ik~lKLeIL~~La~e~N-----------v~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~ 344 (800)
+.+ ..+....++ ...+|..-++.|..+...-+ +..+++-+...+.|.+.+++..|-+++..+...+
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 221 112222233 46799999999998877666 3568888889999999999999999999999888
Q ss_pred CccHHHHH
Q 003722 345 PKMANTCV 352 (800)
Q Consensus 345 p~~a~~~l 352 (800)
|..+...+
T Consensus 209 ~~~a~~~~ 216 (228)
T PF12348_consen 209 PERAESIL 216 (228)
T ss_dssp -HHH----
T ss_pred CHhhccch
Confidence 88876655
No 60
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.10 E-value=7.8 Score=45.65 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=99.6
Q ss_pred hhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCccccccc---ccceeccCC
Q 003722 215 PLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHY---EDFFVSSSD 290 (800)
Q Consensus 215 pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l---~~Ffi~~~D 290 (800)
.|+...|-.+-.=|+..++.-++.+.+.++++-+..++.. +.+.+.++.+.+..|+...|+--..++ ....|. .-
T Consensus 347 sLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~-eG 425 (898)
T COG5240 347 SLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ-EG 425 (898)
T ss_pred HHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh-cc
Confidence 3455667666666777777878888899999988888874 678899999999999998885433322 222222 22
Q ss_pred chHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH--HHHHHHHHH
Q 003722 291 SYQSKALKLEILSSIV--TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA--NTCVEGLLA 357 (800)
Q Consensus 291 p~~Ik~lKLeIL~~La--~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a--~~~l~~LL~ 357 (800)
-...|+..+|.|..+. .++.-+.++++|-+|+.|. ++-.-+++-+|.++.-.|... ..++..+..
T Consensus 426 g~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyN 494 (898)
T COG5240 426 GLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDC--EYHQITVRILGILGREGPRAKTPGKYVRHIYN 494 (898)
T ss_pred cchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCCcchHHHHHHH
Confidence 3467888888888765 3567788999999999854 567778888888888777533 244444443
No 61
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=9.2 Score=46.41 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcccccccccceec------cCCchHHHHHHHHHHHhhcCC--
Q 003722 239 EDVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS------SSDSYQSKALKLEILSSIVTE-- 308 (800)
Q Consensus 239 ~~l~~~v~pLv~LL~s--~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~------~~Dp~~Ik~lKLeIL~~La~e-- 308 (800)
+....+..-++|++.+ +.-++--++-.+..++..-..=|..|...|... .-+..+|-...+-+...|++.
T Consensus 592 ~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 592 EVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE 671 (859)
T ss_pred hHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778888876 334555556666666666566677776666432 223467878888888777763
Q ss_pred CCH----HHHHHHHHHhhhcC--ChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCc----hh
Q 003722 309 SSI----SSVFKEFQDYIRDP--DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD----VL 378 (800)
Q Consensus 309 ~Nv----~~Il~EL~~Yv~~~--d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~----vv 378 (800)
+++ ..++.-|...+.+. +++++-......|.+|..+......+++..+.++++-. ..+.++.+. ++
T Consensus 672 ~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as----~~~~d~~~~~~~dYv 747 (859)
T KOG1241|consen 672 DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS----SVQTDPADDSMVDYV 747 (859)
T ss_pred hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hccCCCCcccHHHHH
Confidence 333 35566666666554 55677788899999999999999999999999998632 111122111 11
Q ss_pred ---H----hHHHHHHHHHHh--CCcchHHHHHHHHHhhhccCh-----hhHHHHHHhhhccccC
Q 003722 379 ---I----QSIISIKSIIKQ--DPSCHEKVIIQLFRSLDSIKV-----PEARVMIIWMVGEYSS 428 (800)
Q Consensus 379 ---~----E~V~vi~~Il~~--~P~~~~~~i~~L~~~ld~i~~-----p~ArasiiWLlGEy~~ 428 (800)
. |+.+.|-+=++. .+......+.++..+++.|.. ..+.++.+=+||.-+.
T Consensus 748 d~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~ 811 (859)
T KOG1241|consen 748 DELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLAT 811 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 1 222222222232 223334456677777766542 3355566777777553
No 62
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=20 Score=43.37 Aligned_cols=277 Identities=18% Similarity=0.163 Sum_probs=160.3
Q ss_pred ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhCCCcccc
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL--NDRSPGVVGAAAAAFASICPNNFTL 84 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL--~D~dp~Vv~aAl~Af~eIcP~~~~L 84 (800)
.++.-.++.+||+-+...+|-----|.+||+.+=.. +..+.+..-+.+|| .+..+.|--.|+.+|..+....-|+
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 466778999999999999998888888888876554 34556666666777 4777788888888888887555556
Q ss_pred hhH--HHHHHHHhCCCCChhh----HHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCC
Q 003722 85 IGR--NYRNLCQILPDVEEWG----QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (800)
Q Consensus 85 ih~--~yr~Lc~~L~d~dEWg----Qi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (800)
+.+ -+.+++.+|.|-+ .| -+-+++.|.+|.+... ..+.. .+
T Consensus 183 ~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~y---------k~~~~-----------------~a------ 229 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPESY---------KTCLP-----------------LA------ 229 (938)
T ss_pred cChhhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHHH---------hhhHH-----------------HH------
Confidence 544 3567777777655 55 4566777777764221 11100 00
Q ss_pred cchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH
Q 003722 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238 (800)
Q Consensus 159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~ 238 (800)
-++....+.. .+ .|+. +.+ .-.=.+|=...-+.+++-++.++
T Consensus 230 -vs~L~riv~~---~~-----------------------------t~~q---dYT--yy~vP~PWL~vKl~rlLq~~p~~ 271 (938)
T KOG1077|consen 230 -VSRLSRIVVV---VG-----------------------------TSLQ---DYT--YYFVPAPWLQVKLLRLLQIYPTP 271 (938)
T ss_pred -HHHHHHHHhh---cc-----------------------------cchh---hce--eecCCChHHHHHHHHHHHhCCCC
Confidence 0000000000 00 0000 000 00011222334445555555333
Q ss_pred ---HHHHHHHHHHHHHhcCC-----------CcchHHHHHHHHHHHH-h--CCcccccccc---cceeccCCchHHHHHH
Q 003722 239 ---EDVKRIVKPLLFILRSS-----------GASKYVVLCNIQVFAK-A--LPHLFVPHYE---DFFVSSSDSYQSKALK 298 (800)
Q Consensus 239 ---~~l~~~v~pLv~LL~s~-----------~ei~yvvL~~I~~L~~-~--~p~lF~~~l~---~Ffi~~~Dp~~Ik~lK 298 (800)
....++...|=++|+.. .|.+-.+|--.+.++. . .|++...... .| +...+ +.||.+.
T Consensus 272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f-ls~rE-~NiRYLa 349 (938)
T KOG1077|consen 272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQF-LSHRE-TNIRYLA 349 (938)
T ss_pred CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-hhccc-ccchhhh
Confidence 22444445555555321 2344445543333332 2 3456555432 33 22233 4599999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhh----h-cCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Q 003722 299 LEILSSIVTESSISSVFKEFQDYI----R-DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQ 361 (800)
Q Consensus 299 LeIL~~La~e~Nv~~Il~EL~~Yv----~-~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~ 361 (800)
||-++.|++.+-..+.++.=++-+ + +.|..++++++.-+-..+. -+.+..++..||..|..
T Consensus 350 LEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~IV~elLqYL~t 415 (938)
T KOG1077|consen 350 LESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQIVAELLQYLET 415 (938)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHhh
Confidence 999999999887777666544433 2 5677899999987765544 37888999999998863
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.52 E-value=12 Score=46.48 Aligned_cols=240 Identities=17% Similarity=0.160 Sum_probs=144.9
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHH-HHHHHHhcCCCccHHHHHHHH---HHHhCCCccc-ch
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIE-EIVGILLNDRSPGVVGAAAAA---FASICPNNFT-LI 85 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~-~~l~~LL~D~dp~Vv~aAl~A---f~eIcP~~~~-Li 85 (800)
+=|+..|-|.+.|.++-|.--|+-|++=+-..-++++.+.+. ++...++.++...-=.+++.. ..++-|..-. +-
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la 125 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA 125 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccc
Confidence 456778889999999999999999998777766644444433 233334544443333333332 3344553211 11
Q ss_pred hHHHHHHH----HhCCCCChhh--HHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCc
Q 003722 86 GRNYRNLC----QILPDVEEWG--QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTY 159 (800)
Q Consensus 86 h~~yr~Lc----~~L~d~dEWg--Qi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 159 (800)
...+.++. ..+....+.. ++.++++|..|-- +.
T Consensus 126 ~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls-r~---------------------------------------- 164 (1233)
T KOG1824|consen 126 ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS-RF---------------------------------------- 164 (1233)
T ss_pred cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH-hh----------------------------------------
Confidence 12333333 3333344443 7777777776641 10
Q ss_pred chhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC---
Q 003722 160 DSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--- 236 (800)
Q Consensus 160 ~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~--- 236 (800)
+..+-++|.-+++++.|.|++.-.||.=-|+.++-+++
T Consensus 165 ---------------------------------------g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 165 ---------------------------------------GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred ---------------------------------------cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence 00133477889999999999999999887777765553
Q ss_pred CHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHH
Q 003722 237 PKEDVKRIVKPLLFILRSS--GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSV 314 (800)
Q Consensus 237 p~~~l~~~v~pLv~LL~s~--~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~I 314 (800)
+...+..++.-|++=|..+ +..--.-...|..+++....-|..|+.. |
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~------------------------------i 255 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDK------------------------------I 255 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccch------------------------------h
Confidence 3455666776776666543 2222223345566666667777777542 2
Q ss_pred HHHHHHhh---hcCChhHHHHHHHHHHHHHhhCCccHH----HHHHHHHHHHH
Q 003722 315 FKEFQDYI---RDPDRRFAADTVAAIGLCARKLPKMAN----TCVEGLLALIR 360 (800)
Q Consensus 315 l~EL~~Yv---~~~d~~f~~~aI~aIg~lA~k~p~~a~----~~l~~LL~LL~ 360 (800)
+.=+..|. ...|++++...+++++.+-.+-|.... .+++.+++.++
T Consensus 256 vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 256 VPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYIS 308 (1233)
T ss_pred hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhc
Confidence 23334566 567788999999999999888876443 44555555554
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.12 E-value=7.4 Score=44.78 Aligned_cols=210 Identities=12% Similarity=-0.044 Sum_probs=130.2
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHH
Q 003722 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRN 91 (800)
Q Consensus 12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~ 91 (800)
.++.++.+++.|.++-||..||-|+.++.. +.....|..+|.|.+|.|-.+++.++....++ .+-.
T Consensus 86 ~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~ 151 (410)
T TIGR02270 86 LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPA 151 (410)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHH
Confidence 348889999999999999999999996532 33445566788999999999888766653322 3557
Q ss_pred HHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhh
Q 003722 92 LCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSY 171 (800)
Q Consensus 92 Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (800)
|...|.+-+.--....++.|.......
T Consensus 152 L~~~L~d~d~~Vra~A~raLG~l~~~~----------------------------------------------------- 178 (410)
T TIGR02270 152 LEAALTHEDALVRAAALRALGELPRRL----------------------------------------------------- 178 (410)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhcccc-----------------------------------------------------
Confidence 777788888888888888876654210
Q ss_pred hcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 003722 172 IEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFI 251 (800)
Q Consensus 172 ~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~L 251 (800)
.+..+...+++.|+.|=.+|+.....++.+.. ..+++.+
T Consensus 179 -------------------------------------a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A----~~~l~~~ 217 (410)
T TIGR02270 179 -------------------------------------SESTLRLYLRDSDPEVRFAALEAGLLAGSRLA----WGVCRRF 217 (410)
T ss_pred -------------------------------------chHHHHHHHcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHH
Confidence 01112344789999999999988877776533 3455554
Q ss_pred hcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHH
Q 003722 252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAA 331 (800)
Q Consensus 252 L~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~ 331 (800)
.....--+...+..+..+. ...-. +..+--...|+. ++.-.+..|-.+-++.-+..++.-+. |..+++
T Consensus 218 ~~~~g~~~~~~l~~~lal~--~~~~a---~~~L~~ll~d~~-vr~~a~~AlG~lg~p~av~~L~~~l~------d~~~aR 285 (410)
T TIGR02270 218 QVLEGGPHRQRLLVLLAVA--GGPDA---QAWLRELLQAAA-TRREALRAVGLVGDVEAAPWCLEAMR------EPPWAR 285 (410)
T ss_pred HhccCccHHHHHHHHHHhC--CchhH---HHHHHHHhcChh-hHHHHHHHHHHcCCcchHHHHHHHhc------CcHHHH
Confidence 4322111222222222222 11111 111111234443 88888888888888887777666543 222555
Q ss_pred HHHHHHHHHH
Q 003722 332 DTVAAIGLCA 341 (800)
Q Consensus 332 ~aI~aIg~lA 341 (800)
.+-.++.+++
T Consensus 286 ~A~eA~~~It 295 (410)
T TIGR02270 286 LAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHhh
Confidence 5555555443
No 65
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=13 Score=45.43 Aligned_cols=181 Identities=17% Similarity=0.229 Sum_probs=114.2
Q ss_pred hhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCccc---ccccccceeccCC
Q 003722 215 PLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLF---VPHYEDFFVSSSD 290 (800)
Q Consensus 215 pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF---~~~l~~Ffi~~~D 290 (800)
+|+...|-.+-.=|+.+.+.-+....+.+++++...++.. +-|.+.++.+.|..++..+|..- ..++.....- .-
T Consensus 326 ~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~-eG 404 (865)
T KOG1078|consen 326 SLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE-EG 404 (865)
T ss_pred hhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh-cc
Confidence 5556667666666666667767777889999998888765 67899999999999999999432 2222222111 11
Q ss_pred chHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc--cHHHHHHHHHHHHHhhhccc
Q 003722 291 SYQSKALKLEILSSIV--TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTS 366 (800)
Q Consensus 291 p~~Ik~lKLeIL~~La--~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~--~a~~~l~~LL~LL~~~~~~~ 366 (800)
-..-|+--.|.+..++ +++.=...+.+|-+|+.| -+|...+++-++.++.--|. .-..+++.....+-.+
T Consensus 405 g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLE---- 478 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILE---- 478 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhh----
Confidence 2234555555555544 455556788888888774 44667777777777766653 2335555555543222
Q ss_pred cccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhc
Q 003722 367 DIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS 409 (800)
Q Consensus 367 ~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~ 409 (800)
+..+=..+++.+-++-.+++.....+...|-+++.+
T Consensus 479 -------n~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D 514 (865)
T KOG1078|consen 479 -------NAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLND 514 (865)
T ss_pred -------hhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcC
Confidence 111234466667777666777777777777777654
No 66
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.48 E-value=7.2 Score=50.49 Aligned_cols=199 Identities=17% Similarity=0.153 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHH----HhC---CcccccccccceeccCCch-HHHHHHHHHHHhhcCCC-CH-----HHHHHHHHHhhhc
Q 003722 259 KYVVLCNIQVFA----KAL---PHLFVPHYEDFFVSSSDSY-QSKALKLEILSSIVTES-SI-----SSVFKEFQDYIRD 324 (800)
Q Consensus 259 ~yvvL~~I~~L~----~~~---p~lF~~~l~~Ffi~~~Dp~-~Ik~lKLeIL~~La~e~-Nv-----~~Il~EL~~Yv~~ 324 (800)
+|-.|.++..+. ... -++|..+++.||-..+++. ..-.-=++|+..|.++. |+ ..|+..|..+-++
T Consensus 117 ~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~ 196 (1266)
T KOG1525|consen 117 YFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRD 196 (1266)
T ss_pred HHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCC
Confidence 445555655443 111 2577788888886665542 22222677777776554 43 3466666666555
Q ss_pred CChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHH
Q 003722 325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLF 404 (800)
Q Consensus 325 ~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~ 404 (800)
...+=..-|-.-|-+||.+........+...+- .... . ......-...+|..|-+-.|+....++.+|-
T Consensus 197 ~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~---~~~s-----~---~~~~~~~~he~i~~L~~~~p~ll~~vip~l~ 265 (1266)
T KOG1525|consen 197 TIKEADKLASDLIERCADNLEDTIANFLNSCLT---EYKS-----R---QSSLKIKYHELILELWRIAPQLLLAVIPQLE 265 (1266)
T ss_pred ccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHh---hccc-----c---ccchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444445577788888876544433332222 1100 0 0011111222455666667877777777776
Q ss_pred HhhhccChhhHHHHHHhh----hccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCC
Q 003722 405 RSLDSIKVPEARVMIIWM----VGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (800)
Q Consensus 405 ~~ld~i~~p~ArasiiWL----lGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~ 472 (800)
.-|-.- ....|-..+=+ ++++.+... .--++++..+.++|.+-+.+||...+-.+.-.++.+|.
T Consensus 266 ~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~---~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 266 FELLSE-QEEVRLKAVKLVGRMFSDKDSQLS---ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHhcc-hHHHHHHHHHHHHHHHhcchhhhc---ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 544322 22333333444 444543221 12357788888999999999999999999888888774
No 67
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.47 E-value=0.7 Score=40.14 Aligned_cols=84 Identities=20% Similarity=0.193 Sum_probs=56.6
Q ss_pred HHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 003722 400 IIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479 (800)
Q Consensus 400 i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~ 479 (800)
|..|.+.+..-.++..|..++|.+|++++ + +++..+.+-+.++...||.+.+.++.++- . .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~--------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----P----EAIPALIELLKDEDPMVRRAAARALGRIG--D--------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----H----HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H--------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----H----hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C--------H
Confidence 34566767555678999999999998863 2 34444555557888999999999999872 1 1
Q ss_pred HHHHHHHHHHccCCChHHHhHHH
Q 003722 480 RLFSYLLELAECDLNYDVRDRAR 502 (800)
Q Consensus 480 ~L~q~vl~la~~D~n~DVRDRAr 502 (800)
+.++.+.++...|.+..||.-|-
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHH
Confidence 23444445555666777776554
No 68
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.62 E-value=7.4 Score=50.38 Aligned_cols=209 Identities=13% Similarity=0.143 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhh--cCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhhhcccccc
Q 003722 293 QSKALKLEILSSI--VTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIE 369 (800)
Q Consensus 293 ~Ik~lKLeIL~~L--a~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p-~~a~~~l~~LL~LL~~~~~~~~~~ 369 (800)
.++..=-++++.| +.+.-+-.|+.+|...+...+.+++.+|+.-+|++-.... ...+.+-+++..+|..-
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~------- 309 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF------- 309 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-------
Confidence 3444555566655 3455566788899988888888999999999998754432 22234445555555431
Q ss_pred CCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhc
Q 003722 370 SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK 449 (800)
Q Consensus 370 ~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~ 449 (800)
.+....|-.++|-.+++++..+|...+.....+.-..... ++..|....-+++.-.-..-...+ .+++|..+..+--
T Consensus 310 -~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l~~-~~~ll~~~~eR~r 386 (1266)
T KOG1525|consen 310 -NDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKLVY-IPLLLKLVAERLR 386 (1266)
T ss_pred -ccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhhhh-hHHHHHHHHHHHh
Confidence 0122335677888899999999987665555544333322 344444334444432110001122 3347777778877
Q ss_pred cCcHHHHHHHHHHHHHHHhh---cCCCC-------h---------------HHHHHHHHHHHHHHccCCChHHHhHHHHH
Q 003722 450 SEAVETKLQILNTTIKVLLC---AKGGD-------M---------------WTITRLFSYLLELAECDLNYDVRDRARFF 504 (800)
Q Consensus 450 ~E~~~VKlqILta~aKL~~~---~p~e~-------~---------------~~l~~L~q~vl~la~~D~n~DVRDRAr~y 504 (800)
+-...||.+.+.-++++|-+ ...++ . ...+.++.++|.......+.++++|-+-+
T Consensus 387 DKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l 466 (1266)
T KOG1525|consen 387 DKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHL 466 (1266)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 88889999999999999985 11100 0 01234556777777788899999999998
Q ss_pred HHHccCC
Q 003722 505 KKLFSHN 511 (800)
Q Consensus 505 ~~LL~~~ 511 (800)
+.+|..-
T Consensus 467 ~~~l~~~ 473 (1266)
T KOG1525|consen 467 YQLLAGL 473 (1266)
T ss_pred HHHHhcc
Confidence 8888653
No 69
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.36 E-value=1.1 Score=40.66 Aligned_cols=101 Identities=10% Similarity=0.118 Sum_probs=66.1
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHH-----HHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHH
Q 003722 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (800)
Q Consensus 314 Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~-----~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~I 388 (800)
++..|..++.+.+.+.+..++.+++.++...|.... .++..++++|..+ +..+...++..+.+|
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----------~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----------DEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----------CHHHHHHHHHHHHHH
Confidence 456666777777888999999999999987655444 4455777776531 233566677788888
Q ss_pred HHhCCcchHH-----HHHHHHHhhhccChhhHHHHHHhhhccc
Q 003722 389 IKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMVGEY 426 (800)
Q Consensus 389 l~~~P~~~~~-----~i~~L~~~ld~i~~p~ArasiiWLlGEy 426 (800)
.+..|..... ++..|.+.+..- +...+...+|+++..
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNL 118 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence 8766543222 355556655543 455666667777653
No 70
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.73 E-value=1.7 Score=39.42 Aligned_cols=63 Identities=22% Similarity=0.070 Sum_probs=53.1
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHhhc-C-chhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 16 AVGKCARDPSVFVRKCAANALPKLHEL-R-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 16 aIkk~l~D~sPYVRK~AA~AI~Kly~l-d-pe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
-+.+-+.|+-|-||-.|..-+.|+..- + +....+.+..++...|.|.|+.|--||+.+|..+|
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La 71 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALA 71 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 345667899999999999999998875 4 42467788888889999999999999999988876
No 71
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.66 E-value=53 Score=39.39 Aligned_cols=75 Identities=23% Similarity=0.194 Sum_probs=54.6
Q ss_pred cccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhh---cCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE---LRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 4 IRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~---ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+|-.--.+.++..|-+.++++.|.||-.||--+..+-. -.-+. ....+-.+|..-|....|-|+|+.+.|+..|.
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 34444566777888899999999999999876554443 33322 44456667777788899999999888877664
No 72
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.47 E-value=5 Score=49.43 Aligned_cols=254 Identities=16% Similarity=0.101 Sum_probs=144.5
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHH--HHHHhCCCcccch
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAA--AFASICPNNFTLI 85 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~--Af~eIcP~~~~Li 85 (800)
+..-+++.++-++.|.++.||.+.|+.+.=+--+-|.+ ..+.+.+..-.+++|-+|.|..+-+- ...+.+++... +
T Consensus 395 ~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g-~ 473 (759)
T KOG0211|consen 395 PDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG-I 473 (759)
T ss_pred chhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc-c
Confidence 34455789999999999999999999887554444422 34456666667899999999998873 33344444322 1
Q ss_pred hHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccch--hhhhhhhhhccCCCcccccccccccccCCCCCCCcchhh
Q 003722 86 GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKE--SIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL 163 (800)
Q Consensus 86 h~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p--~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 163 (800)
.-+-..++..|.++.||..--+-.-+..|.+.- ..- ..+|+
T Consensus 474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l---a~q~~~~~~~---------------------------------- 516 (759)
T KOG0211|consen 474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQL---ALQLGVEFFD---------------------------------- 516 (759)
T ss_pred hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH---HHhhhhHHhh----------------------------------
Confidence 112335667778888887666666666666421 000 00000
Q ss_pred hhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHH----HHHHhcCCHH
Q 003722 164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAA----GVHWIMSPKE 239 (800)
Q Consensus 164 ~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa----~~~~~l~p~~ 239 (800)
+- +-..+...+...=.++-=+|+ .+.+.++..-
T Consensus 517 ----------------------------------------~~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w 553 (759)
T KOG0211|consen 517 ----------------------------------------EK---LAELLRTWLPDHVYSIREAAARNLPALVETFGSEW 553 (759)
T ss_pred ----------------------------------------HH---HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch
Confidence 00 111111112222222222222 2333444322
Q ss_pred HHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhCC-cccccccccce-eccCCch-HHHHHHHHHHHhhc---CCCCHH
Q 003722 240 DVKRIVKPLLFI-LRSSGASKYVVLCNIQVFAKALP-HLFVPHYEDFF-VSSSDSY-QSKALKLEILSSIV---TESSIS 312 (800)
Q Consensus 240 ~l~~~v~pLv~L-L~s~~ei~yvvL~~I~~L~~~~p-~lF~~~l~~Ff-i~~~Dp~-~Ik~lKLeIL~~La---~e~Nv~ 312 (800)
.....+.-++.. +..+.=.|...|..|..|+.... +++..++--++ -...||. .||-..+..|..+. ...-..
T Consensus 554 ~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~ 633 (759)
T KOG0211|consen 554 ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD 633 (759)
T ss_pred hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH
Confidence 333344333333 22234578888999998886554 45666654443 3457764 78888877777654 344444
Q ss_pred HHHHHHHHhh-hcCChhHHHHHHHHHHHHHhh
Q 003722 313 SVFKEFQDYI-RDPDRRFAADTVAAIGLCARK 343 (800)
Q Consensus 313 ~Il~EL~~Yv-~~~d~~f~~~aI~aIg~lA~k 343 (800)
.-+..+...+ .+.|.+.+-.|+.|.|.++..
T Consensus 634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 634 EEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 4444444444 467778888888888877653
No 73
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.24 E-value=21 Score=42.50 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=54.3
Q ss_pred HhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHhCC
Q 003722 18 GKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILP 97 (800)
Q Consensus 18 kk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~L~ 97 (800)
-.+++ .++-+.+-||-=|+|.|+.-|+.+.+.+.. +-.|..|.|..|-..|+..|-.+|-+.-+++.+...-|+.+|.
T Consensus 29 l~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a-~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 29 LDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINA-QLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ 106 (556)
T ss_dssp HHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHH-HHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT
T ss_pred HHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHH-HHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh
Confidence 33444 367799999999999999999434444444 4457889999999999999999998888888888888888886
No 74
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=88.97 E-value=14 Score=38.14 Aligned_cols=126 Identities=17% Similarity=0.060 Sum_probs=69.8
Q ss_pred chhHhHHHHHHHHHHhCCcchHHHHH----HHHHhhhccC---hhhHHHHHHhhhccccCCCCCCcchHHHH-HHHHHhh
Q 003722 376 DVLIQSIISIKSIIKQDPSCHEKVII----QLFRSLDSIK---VPEARVMIIWMVGEYSSVGVKIPRMLTTV-LKYLAWC 447 (800)
Q Consensus 376 ~vv~E~V~vi~~Il~~~P~~~~~~i~----~L~~~ld~i~---~p~ArasiiWLlGEy~~~~~~ip~i~~dv-Lr~l~~~ 447 (800)
.++.+++..+..+.+......+..+. .|.+.+.+-+ ...|..++.= +.+++. +.+.+ +..+...
T Consensus 68 ~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~-i~~~~~-------~~~~~~~~~l~~~ 139 (228)
T PF12348_consen 68 KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDA-IIESCS-------YSPKILLEILSQG 139 (228)
T ss_dssp -HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHH-HHTTS--------H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-HHHHCC-------cHHHHHHHHHHHH
Confidence 36777887788887765554444444 3444333211 1233333322 233332 12344 5566667
Q ss_pred hccCcHHHHHHHHHHHHHHHhhcCC--CCh---HHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 003722 448 FKSEAVETKLQILNTTIKVLLCAKG--GDM---WTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (800)
Q Consensus 448 F~~E~~~VKlqILta~aKL~~~~p~--e~~---~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~ 510 (800)
...-++.+|...+..+..+.-..+. ... ..+..+.. .+..+..|.+++||+-|+..+..+..
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~-~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVK-ALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHH-HHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 7788899999999999888877761 111 11233443 44555789999999999998887754
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.21 E-value=0.42 Score=38.36 Aligned_cols=32 Identities=34% Similarity=0.209 Sum_probs=28.1
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHH
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKL 39 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kl 39 (800)
...+-++..+.+++.|.++.||.+|+.|+.++
T Consensus 24 ~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 24 PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45678889999999999999999999999754
No 76
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.48 E-value=81 Score=39.79 Aligned_cols=176 Identities=14% Similarity=0.171 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhC-Ccccccc---cccceec------cCCchHHHHHHHHHHHhhcC----CCCHHHHHHHHH-Hhh--
Q 003722 260 YVVLCNIQVFAKAL-PHLFVPH---YEDFFVS------SSDSYQSKALKLEILSSIVT----ESSISSVFKEFQ-DYI-- 322 (800)
Q Consensus 260 yvvL~~I~~L~~~~-p~lF~~~---l~~Ffi~------~~Dp~~Ik~lKLeIL~~La~----e~Nv~~Il~EL~-~Yv-- 322 (800)
-.++..+..++.++ +..|.+. +-..|-+ .+++.--|.=.|.++..|++ .+-++..++-+. .|+
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 35677788888877 6666543 2333332 24455566677888877763 233334444332 233
Q ss_pred --hcCChhHHHHHHHHHHHHH-hhCC--ccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchH
Q 003722 323 --RDPDRRFAADTVAAIGLCA-RKLP--KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE 397 (800)
Q Consensus 323 --~~~d~~f~~~aI~aIg~lA-~k~p--~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~ 397 (800)
++.---++++|.--++..+ +.++ ......++...+.|... .+-.|-.|+...++-+|..++..++
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d----------~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLND----------NELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccC----------CcCchhhHHHHHHHHHHhcchhhhh
Confidence 2222247888888888888 5554 45556666666655421 1223678899999999998886654
Q ss_pred HH---HHHHHHhhh---ccChhhHHHHHH-hhhccccCCCCCCcchHHHHHHHHHhhh
Q 003722 398 KV---IIQLFRSLD---SIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCF 448 (800)
Q Consensus 398 ~~---i~~L~~~ld---~i~~p~Arasii-WLlGEy~~~~~~ip~i~~dvLr~l~~~F 448 (800)
++ |..+++.|- ...+-+....++ =++++|++.. .| ++.++...++..|
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseEl--sP-fA~eL~q~La~~F 594 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEEL--SP-FAVELCQNLAETF 594 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh--ch-hHHHHHHHHHHHH
Confidence 33 333333221 122444555554 7899998732 34 4667766666555
No 77
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=87.46 E-value=20 Score=39.33 Aligned_cols=92 Identities=26% Similarity=0.222 Sum_probs=67.0
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHH
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr 90 (800)
+.....+.+.+.|+++.||..|+..+..+ ......+.+..+|.|.++.|-..|+.++-++-... .+.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------a~~ 108 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------AVP 108 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh------HHH
Confidence 45677888999999999999999884422 12334455667899999999999999999886332 223
Q ss_pred HHHHhCC-CCChhhHHHHHHHHHhhh
Q 003722 91 NLCQILP-DVEEWGQILLIEILLRYV 115 (800)
Q Consensus 91 ~Lc~~L~-d~dEWgQi~iL~lL~rY~ 115 (800)
.|...|. +.+.|-.......|.+-.
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 4445555 688888887777777654
No 78
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.28 E-value=20 Score=39.13 Aligned_cols=130 Identities=18% Similarity=0.109 Sum_probs=77.2
Q ss_pred HHHHHh-hhhhccCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCC-ccccccc
Q 003722 207 KLLLQC-TSPLLWSHNSAVVLAAAGVHWIM--SPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP-HLFVPHY 281 (800)
Q Consensus 207 ~lLL~~-~~pLL~S~NsAVVlaaa~~~~~l--~p~~~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p-~lF~~~l 281 (800)
.-+++. +.|.++|.+++|--.+.+++-.+ -..+.-.....-+...+. .+.+++-.+|+.|--|+..++ ..|...-
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 344544 45888888888777777764222 122222222223333443 356788888888877777665 2222221
Q ss_pred ccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH-HHHHHHHHHH
Q 003722 282 EDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA-NTCVEGLLAL 358 (800)
Q Consensus 282 ~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a-~~~l~~LL~L 358 (800)
++. .......+++=|..|+.+.+.++...++..+.++-..---.. ..++..|+-+
T Consensus 105 --------~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 105 --------DND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred --------ccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 111 344556777778888888888899999999998765433233 5666666544
No 79
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=8.4 Score=45.26 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=122.3
Q ss_pred cCCChHHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCC---------cccccc
Q 003722 218 WSHNSAVVLAAAGVHWIMSP--KED----V-KRIVKPLLFILRSS-GASKYVVLCNIQVFAKALP---------HLFVPH 280 (800)
Q Consensus 218 ~S~NsAVVlaaa~~~~~l~p--~~~----l-~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p---------~lF~~~ 280 (800)
+..++.+.++|+-++-+++. .+. + ..++..++.||.++ .+++--+.-.|.-|+...| .++.|-
T Consensus 120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 56779999999999888864 111 1 23566678998864 5566555555555554433 233333
Q ss_pred cccceeccCCchHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHH---
Q 003722 281 YEDFFVSSSDSYQSKALKLEILSSIVTES-------SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANT--- 350 (800)
Q Consensus 281 l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~-------Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~--- 350 (800)
+..+. .+++..+.+-..=.|..||--. ++..|+.=|..-+.+.|.++..+|.-||..++.--++...-
T Consensus 200 l~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 200 LRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred HHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 33332 2344567777778888998765 47888888888899999999999999999998666655543
Q ss_pred --HHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHH-----HHHHHHHhhhccChhhHHHHHHhhh
Q 003722 351 --CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMV 423 (800)
Q Consensus 351 --~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~-----~i~~L~~~ld~i~~p~ArasiiWLl 423 (800)
++..|++||... ...++.-++-.+-+|+.-+...... .+..|...+..-.....|....|+|
T Consensus 278 ~gvv~~LV~lL~~~-----------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 278 AGVVPRLVDLLGHS-----------SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred ccchHHHHHHHcCC-----------CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 345777877532 1123334444444443333222221 2444444444333344667779999
Q ss_pred cccc
Q 003722 424 GEYS 427 (800)
Q Consensus 424 GEy~ 427 (800)
+.-+
T Consensus 347 SNIt 350 (514)
T KOG0166|consen 347 SNIT 350 (514)
T ss_pred HHhh
Confidence 8764
No 80
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=86.56 E-value=27 Score=34.83 Aligned_cols=151 Identities=17% Similarity=0.083 Sum_probs=83.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCch
Q 003722 298 KLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV 377 (800)
Q Consensus 298 KLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~v 377 (800)
|+.-+..=.++.|++.++++|..+..+.+.+.....++.|-..|..-|..+..+...+-.+-... ...+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~-----------~~~f 71 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRF-----------PSEF 71 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-----------HHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccc-----------hhhH
Confidence 44434433459999999999999887767889999999999999999977766655544432210 0011
Q ss_pred hHhHHHHHHHHHHhCCcchHHHHHHHHHhhhc--cChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhcc-----
Q 003722 378 LIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS----- 450 (800)
Q Consensus 378 v~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~--i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~----- 450 (800)
....+..+..-++... .....+. .....-+.+.+.++||-....-.-+.++-++++.+......
T Consensus 72 ~~~ll~~~~~~f~~~~---------~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~ 142 (209)
T PF02854_consen 72 RSLLLNRCQEEFEERY---------SNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPP 142 (209)
T ss_dssp HHHHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHH
T ss_pred HHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCC
Confidence 1111111111111110 0000010 11122344567888885332212244567788888766655
Q ss_pred ---CcHHHHHHHHHHHHHHHh
Q 003722 451 ---EAVETKLQILNTTIKVLL 468 (800)
Q Consensus 451 ---E~~~VKlqILta~aKL~~ 468 (800)
+..+.=..+|..+.+.+.
T Consensus 143 ~~~~~ie~~~~lL~~~G~~l~ 163 (209)
T PF02854_consen 143 PDEENIECLCTLLKTCGKKLE 163 (209)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHh
Confidence 334444556666666665
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.43 E-value=36 Score=43.61 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=47.6
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc--CchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCC
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL--RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l--dpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP 79 (800)
+++++..+|+..-.- =-|.+|+-+...... +.+.-.+.+..++-.|+.|+.+.|-+.|+..+.++.+
T Consensus 423 ~vs~lts~IR~lk~~----~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~ 491 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTI----QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLA 491 (1431)
T ss_pred eHHHHHHHHHhhhcc----hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 456666555543221 236677776665554 4434667788999999999999999999999999864
No 82
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.97 E-value=1.9 Score=51.33 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCch--hhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE--EITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 10 ~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe--~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+.-++.-+..-+.|.+||+|-.|...+.|+|++... ..+..+++++...|.|++..|-.+|+..+..+.
T Consensus 344 ~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 344 LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 345566667778999999999999999999998532 355678888888999999999999999887774
No 83
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.05 E-value=45 Score=37.43 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhc-CCCCHHHHHH-----HHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHH-----HHHHHHHHhh
Q 003722 294 SKALKLEILSSIV-TESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCV-----EGLLALIRQE 362 (800)
Q Consensus 294 Ik~lKLeIL~~La-~e~Nv~~Il~-----EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l-----~~LL~LL~~~ 362 (800)
=|.-.|+-|-.++ +=+|+..++. =+..|+.+.+..++..|.+-||.|+++-|.+-..++ ..|+..++.+
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 3444444444443 2344444332 334599999999999999999999999998777664 4555555421
Q ss_pred hccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHH-----HHHHHHhhhcc-ChhhHHHHHHhhhccccCC--CCCCc
Q 003722 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV-----IIQLFRSLDSI-KVPEARVMIIWMVGEYSSV--GVKIP 434 (800)
Q Consensus 363 ~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~-----i~~L~~~ld~i-~~p~ArasiiWLlGEy~~~--~~~ip 434 (800)
....+-..++-.|..+||++|...... ..-|.+.+..= .+...++.++++++-+-.. .+..
T Consensus 179 ----------~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d- 247 (342)
T KOG2160|consen 179 ----------DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED- 247 (342)
T ss_pred ----------CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-
Confidence 122244667788999999998654332 23444444442 4678888888988876431 1100
Q ss_pred chHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHhhcC
Q 003722 435 RMLTTVLKYLAWCFK-SEAVETKLQILNTTIKVLLCAK 471 (800)
Q Consensus 435 ~i~~dvLr~l~~~F~-~E~~~VKlqILta~aKL~~~~p 471 (800)
-+.+..+.+.+.++. ....+++...+++..++....+
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 011222333333443 4455677777777766655443
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.04 E-value=5.6 Score=36.41 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHcc
Q 003722 436 MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 509 (800)
Q Consensus 436 i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~ 509 (800)
..+.++.-+.+.|.+++..||.....++..+.-...++....+..+|..+..+ ..|.+..||.=|.++-+||.
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-SADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhc
Confidence 35666777778999999999999888888887665555444567788877776 47899999999999999885
No 85
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.68 E-value=1 Score=34.83 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHH
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANA 35 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~A 35 (800)
+.|..+|.+.+.|++|-||++|.-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5789999999999999999998754
No 86
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.65 E-value=20 Score=42.71 Aligned_cols=88 Identities=18% Similarity=0.324 Sum_probs=51.1
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHH-HHHHHHHHhCCcch
Q 003722 318 FQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI-ISIKSIIKQDPSCH 396 (800)
Q Consensus 318 L~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V-~vi~~Il~~~P~~~ 396 (800)
+...+.|.|..+++.||+.|-.++..-|....++.++|..||..+ +.....+| .+|..|++.+|..
T Consensus 64 ~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td------------d~~E~~~v~~sL~~ll~~d~k~- 130 (556)
T PF05918_consen 64 QLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD------------DPVELDAVKNSLMSLLKQDPKG- 130 (556)
T ss_dssp HHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc------------cHHHHHHHHHHHHHHHhcCcHH-
Confidence 334455667889999999999999888999999999999999743 21222223 2567788888853
Q ss_pred HHHHHHHHHhhh--ccChhhHHHHHH
Q 003722 397 EKVIIQLFRSLD--SIKVPEARVMII 420 (800)
Q Consensus 397 ~~~i~~L~~~ld--~i~~p~Arasii 420 (800)
++.-|+..+. .-.+...|-.++
T Consensus 131 --tL~~lf~~i~~~~~~de~~Re~~l 154 (556)
T PF05918_consen 131 --TLTGLFSQIESSKSGDEQVRERAL 154 (556)
T ss_dssp --HHHHHHHHHH---HS-HHHHHHHH
T ss_pred --HHHHHHHHHHhcccCchHHHHHHH
Confidence 3444444443 123445666655
No 87
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.56 E-value=13 Score=37.25 Aligned_cols=125 Identities=15% Similarity=0.308 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC-Ccccccccccce------eccCCchHHHHHHHHHHHhhcCCC
Q 003722 238 KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFF------VSSSDSYQSKALKLEILSSIVTES 309 (800)
Q Consensus 238 ~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~-p~lF~~~l~~Ff------i~~~Dp~~Ik~lKLeIL~~La~e~ 309 (800)
...+.+.+.-+..||++ ++..++.+++-+..++..+ ++.|..|+..++ +...||..++...+..|..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~--- 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF--- 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Confidence 45567777777888876 5788999999998888887 788877765543 123666677777777776642
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHH
Q 003722 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (800)
Q Consensus 310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il 389 (800)
.|+.. .+++.|+... ......+..++.+++. ......++..+..++
T Consensus 97 ----------~~~~~-~p~l~Rei~t----------p~l~~~i~~ll~l~~~-------------~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 97 ----------DLIRG-KPTLTREIAT----------PNLPKFIQSLLQLLQD-------------SSCPETALDALATLL 142 (165)
T ss_pred ----------HHhcC-CCchHHHHhh----------ccHHHHHHHHHHHHhc-------------cccHHHHHHHHHHHH
Confidence 33332 2234444320 1123445667776651 124555777899999
Q ss_pred HhCCcchHHH
Q 003722 390 KQDPSCHEKV 399 (800)
Q Consensus 390 ~~~P~~~~~~ 399 (800)
+.||..+...
T Consensus 143 ~~~ptt~rp~ 152 (165)
T PF08167_consen 143 PHHPTTFRPF 152 (165)
T ss_pred HHCCccccch
Confidence 9999865443
No 88
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=82.99 E-value=26 Score=38.57 Aligned_cols=65 Identities=29% Similarity=0.316 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~ 81 (800)
+-.+..+.+.+.|.++.||..|+.|+.++- +| .-.+.++.. |-+|.+..|..+|+.++..+-..+
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~-~a~~~li~~---l~~d~~~~vR~~aa~aL~~~~~~~ 137 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELG--DP-EAVPPLVEL---LENDENEGVRAAAARALGKLGDER 137 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-hHHHHHHHH---HHcCCcHhHHHHHHHHHHhcCchh
Confidence 456788899999999999999999888652 23 223333333 233999999999999999997654
No 89
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=82.89 E-value=2.7 Score=38.14 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=34.3
Q ss_pred CCCCeeEEEEecCCCccCCCceEEEEEEEEecCCCceeceEeeec
Q 003722 738 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDE 782 (800)
Q Consensus 738 ~g~gl~~~y~f~~~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~~ 782 (800)
.++||.|.+.+.|.+ ..++|.++|.|++..+|+++.+.--
T Consensus 3 ~~~~l~I~~~~~~~~-----~~~~i~~~~~N~s~~~it~f~~~~a 42 (104)
T smart00809 3 EKNGLQIGFKFERRP-----GLIRITLTFTNKSPSPITNFSFQAA 42 (104)
T ss_pred cCCCEEEEEEEEcCC-----CeEEEEEEEEeCCCCeeeeEEEEEE
Confidence 357999999998863 4689999999999999999998654
No 90
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=82.38 E-value=9.5 Score=48.44 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=77.6
Q ss_pred ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc-CchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC--CCccc
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--PNNFT 83 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc--P~~~~ 83 (800)
..++..|-..+...+.|+.|+||++-..+|.-++.. ..+...+.|...|-+.|||+|...-++=+-.+.-|| -..-.
T Consensus 573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence 456778888999999999999999999999998886 332244567788888999999988775322222222 11100
Q ss_pred chhHHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722 84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (800)
Q Consensus 84 Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~ 116 (800)
.-....--|...|.|-+|.--+.+|+.|.-.+.
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 101112246678999999999999999888774
No 91
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=81.83 E-value=1.2e+02 Score=36.22 Aligned_cols=391 Identities=14% Similarity=0.089 Sum_probs=212.6
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCC---Cccc-chhHHH
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NNFT-LIGRNY 89 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP---~~~~-Lih~~y 89 (800)
...+-.+ .|+++-||++-+-|....+...-..+...|.++.+.-|+-....-+.+++..++-..- ...+ .+|+..
T Consensus 20 ~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~ 98 (569)
T KOG1242|consen 20 LFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISII 98 (569)
T ss_pred eeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHH
Confidence 3344445 9999999999988888887765434566777777776653333334444444433321 1223 378889
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccC-CCCCCCcchhhhhhhh
Q 003722 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDN-GIPSRTYDSELVNLVS 168 (800)
Q Consensus 90 r~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 168 (800)
-+|.+.+....+--|......|.-|.....+. +..+|.....+--...+ ...+ ++ -...+- +.
T Consensus 99 ~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~--~~~~~l~~l~~ll~~~~--------~~~~~~a-----a~~~ag-~v 162 (569)
T KOG1242|consen 99 EILLEELDTPSKSVQRAVSTCLPPLVVLSKGL--SGEYVLELLLELLTSTK--------IAERAGA-----AYGLAG-LV 162 (569)
T ss_pred HHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc--CHHHHHHHHHHHhcccc--------HHHHhhh-----hHHHHH-HH
Confidence 99999999999999999999998887533211 11222211100000000 0000 00 000000 00
Q ss_pred hhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCCh-----HHHHHHHHHHHhcCCH--HHH
Q 003722 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-----AVVLAAAGVHWIMSPK--EDV 241 (800)
Q Consensus 169 ~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~Ns-----AVVlaaa~~~~~l~p~--~~l 241 (800)
++++. ...-=..++..+...++..++ +..++...++.+++++ -++
T Consensus 163 ~g~~i----------------------------~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi 214 (569)
T KOG1242|consen 163 NGLGI----------------------------ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI 214 (569)
T ss_pred cCcHH----------------------------hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH
Confidence 00000 000013455555555555554 3444455555667654 234
Q ss_pred HHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCC----ccccccc-ccceeccCCchHHHHHHHHHHHhhcCCCCH----
Q 003722 242 KRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP----HLFVPHY-EDFFVSSSDSYQSKALKLEILSSIVTESSI---- 311 (800)
Q Consensus 242 ~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p----~lF~~~l-~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv---- 311 (800)
..+...++.-.+ ..+.+|-.+-.....+...-+ ..|.|++ ...+ .+-=.-|.-.|++|-.|+...+.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~---~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL---EAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH---HHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 444444444443 357888888888877765444 2333332 1111 11124667778888888876654
Q ss_pred --HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHH
Q 003722 312 --SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (800)
Q Consensus 312 --~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p-~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~I 388 (800)
+.|+..+.+=+.|.+++++..++.+|-++..... .....++..|++-+.-. ...+.+++. .|
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp------------~~~~~e~~~---~L 356 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADP------------SCYTPECLD---SL 356 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCc------------ccchHHHHH---hh
Confidence 6799999999999999999999999988887663 45667778888766421 112444432 23
Q ss_pred HHh------CCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCC----CCcchHHHHHHHHHhhhccCcHHHHHH
Q 003722 389 IKQ------DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV----KIPRMLTTVLKYLAWCFKSEAVETKLQ 458 (800)
Q Consensus 389 l~~------~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~----~ip~i~~dvLr~l~~~F~~E~~~VKlq 458 (800)
.+. .+.....++..|-+-+..=..+.=|.+ +=++|--|.+.+ ..| +++.++.-+-..+.+--++||.-
T Consensus 357 ~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t-~~IidNm~~LveDp~~lap-fl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 357 GATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKT-AIIIDNMCKLVEDPKDLAP-FLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred cceeeeeeecchhHHHHHHHHHHHHhhccchhhhhH-HHHHHHHHHhhcCHHHHhh-hHHHHhhHHHHHhcCCChhHHHH
Confidence 322 233334445555555543221111222 223333333221 123 34555555555555556889988
Q ss_pred HHHHHHHHHhh
Q 003722 459 ILNTTIKVLLC 469 (800)
Q Consensus 459 ILta~aKL~~~ 469 (800)
..-+..++.-+
T Consensus 435 aarAL~~l~e~ 445 (569)
T KOG1242|consen 435 AARALGALLER 445 (569)
T ss_pred HHHHHHHHHHH
Confidence 88877776543
No 92
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.20 E-value=37 Score=41.50 Aligned_cols=184 Identities=16% Similarity=0.238 Sum_probs=111.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHHHHHHHHhhcCCC
Q 003722 232 HWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTES 309 (800)
Q Consensus 232 ~~~l~p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~lKLeIL~~La~e~ 309 (800)
+-+|.--.++..+.+.++..+.. +-+.+-++.-.+...+...|..-.-....|.--+.|+ .-||.+++..+..+.-+.
T Consensus 38 Ia~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~ 117 (734)
T KOG1061|consen 38 IAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK 117 (734)
T ss_pred HhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH
Confidence 33443335566666666666643 3444444444444445566654333333333334454 579999999999998888
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc--cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHH
Q 003722 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKS 387 (800)
Q Consensus 310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~--~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~ 387 (800)
=++.+.+.|...+++.+...++.++..+..+-..-+. .....++.|-+++.. .+..||+-|+-.+..
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D-----------~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSD-----------SNPMVVANALAALSE 186 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcC-----------CCchHHHHHHHHHHH
Confidence 8899999999999988877766666555554443332 122345555555541 234578888888999
Q ss_pred HHHhCCc-----chHHHHHHHHHhhhccChhhHHHHHHhhhcccc
Q 003722 388 IIKQDPS-----CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS 427 (800)
Q Consensus 388 Il~~~P~-----~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~ 427 (800)
|...+|+ .....+.++...+..+++ =+++.|+=.+-+|-
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~al~ec~E-W~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEALNECTE-WGQIFILDCLAEYV 230 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHHHHHhhh-hhHHHHHHHHHhcC
Confidence 9888874 233445566665555533 24455555555664
No 93
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=81.16 E-value=1.3e+02 Score=36.03 Aligned_cols=254 Identities=15% Similarity=0.150 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHH----hcCCH---------HHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHHhCCcccccccccc
Q 003722 221 NSAVVLAAAGVHW----IMSPK---------EDVKRIVKPLLFI---LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDF 284 (800)
Q Consensus 221 NsAVVlaaa~~~~----~l~p~---------~~l~~~v~pLv~L---L~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~F 284 (800)
+|-++.+|...+. |+++. .....+++.|+.- ..+..|.|-.....+-+|+...|+...+-+-.|
T Consensus 463 ~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 463 CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4556666665544 33331 1234566666532 234677888888888888888898888877777
Q ss_pred eeccCCchHHHHHHHH----HHH-hhcCCCCHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHH
Q 003722 285 FVSSSDSYQSKALKLE----ILS-SIVTESSISSVFKEFQD-YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358 (800)
Q Consensus 285 fi~~~Dp~~Ik~lKLe----IL~-~La~e~Nv~~Il~EL~~-Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~L 358 (800)
| .+-..||+ ++. .|++++- ..++||+. |+. +....|++-+ ..+.++.+..+..++++
T Consensus 543 ~-------~~~~~kl~~~isv~~q~l~~eD~--~~~~elqSN~~~-----vl~aiir~~~---~~ie~v~D~lm~Lf~r~ 605 (858)
T COG5215 543 Y-------DYTSKKLDECISVLGQILATEDQ--LLVEELQSNYIG-----VLEAIIRTRR---RDIEDVEDQLMELFIRI 605 (858)
T ss_pred H-------HHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHH-----HHHHHHHhcC---CCcccHHHHHHHHHHHH
Confidence 5 23344554 222 1233332 23677764 433 2222222222 12356788899999999
Q ss_pred HHhhhccccccCCCCCCchh-HhHHHHHHHHHHhCCcch----HHHHHHHHHhhhccChhhHHHHHHhhhccccCCC-CC
Q 003722 359 IRQELLTSDIESGNGEADVL-IQSIISIKSIIKQDPSCH----EKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVG-VK 432 (800)
Q Consensus 359 L~~~~~~~~~~~~~~~~~vv-~E~V~vi~~Il~~~P~~~----~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~-~~ 432 (800)
|+.. +..++ -+....|-.+...-.+.+ .+.++.|.+.+ ..++.....+.+=++|.-++.. +.
T Consensus 606 les~-----------~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 606 LEST-----------KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred Hhcc-----------CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhhh
Confidence 8752 11122 223334444443222233 34566666666 4555556666688888876532 22
Q ss_pred CcchHHHHHHHHHhhhccC--cHHHHHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHHHccCCC---hHHHhHHHH
Q 003722 433 IPRMLTTVLKYLAWCFKSE--AVETKLQILNTTIKVLLCAKGGDM----WTITRLFSYLLELAECDLN---YDVRDRARF 503 (800)
Q Consensus 433 ip~i~~dvLr~l~~~F~~E--~~~VKlqILta~aKL~~~~p~e~~----~~l~~L~q~vl~la~~D~n---~DVRDRAr~ 503 (800)
+...+.++...|+.....+ +..+|-.||..+.-+.+.-.. .+ +++--|||.+-++-....+ .|.|+.++.
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga-~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~ 752 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA-NFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQ 752 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHH
Confidence 2222556666777666655 357898999888777654321 11 2233345544333222212 467777765
Q ss_pred H
Q 003722 504 F 504 (800)
Q Consensus 504 y 504 (800)
.
T Consensus 753 ~ 753 (858)
T COG5215 753 L 753 (858)
T ss_pred H
Confidence 4
No 94
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.02 E-value=55 Score=34.60 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=80.0
Q ss_pred hccCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceec-----
Q 003722 216 LLWSHNSAVVLAAAGVHWIMSPKE--DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS----- 287 (800)
Q Consensus 216 LL~S~NsAVVlaaa~~~~~l~p~~--~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~----- 287 (800)
+-+..++.++....++...++... ....+.+.|..|... ..+.+|+.++-+..+-...+..| ++++.|...
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRI 87 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhc
Confidence 556778888888888877765433 344566666667654 45678999999999999999887 666644333
Q ss_pred ----cCCchHHHHHHHH---HHHhh--cCCCCHHHHHHHHHHhh-hcCChhHHHHHHHHHHHHHh
Q 003722 288 ----SSDSYQSKALKLE---ILSSI--VTESSISSVFKEFQDYI-RDPDRRFAADTVAAIGLCAR 342 (800)
Q Consensus 288 ----~~Dp~~Ik~lKLe---IL~~L--a~e~Nv~~Il~EL~~Yv-~~~d~~f~~~aI~aIg~lA~ 342 (800)
.++.. -....+. -+..+ ..++...+++..+...+ .+.+...+.-++.+|..+..
T Consensus 88 ~~~~~~~~~-~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 88 PSSFSSKDE-FWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred ccccCCCcc-hHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11111 1111111 11111 23557788888888888 56666677777888887773
No 95
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.89 E-value=21 Score=42.36 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=101.3
Q ss_pred CchhhHHHHHHHHHHhhcCch-hhHHHHHHHHHHHhc----CCCccHHHHHHHHHHHh-C---CCcccchhHHHHHHHHh
Q 003722 25 SVFVRKCAANALPKLHELRQE-EITSAIEEIVGILLN----DRSPGVVGAAAAAFASI-C---PNNFTLIGRNYRNLCQI 95 (800)
Q Consensus 25 sPYVRK~AA~AI~Kly~ldpe-~~~~~L~~~l~~LL~----D~dp~Vv~aAl~Af~eI-c---P~~~~Lih~~yr~Lc~~ 95 (800)
++=-||. +.+++.+--+ ....++...+.+.|. ...|.-+..-+.+|.+. . |+..+++.+.++++++-
T Consensus 24 ~aGhrk~----~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg 99 (885)
T COG5218 24 SAGHRKS----LAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRG 99 (885)
T ss_pred hhhHHHH----HHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhc
Confidence 4445665 5566665332 344556666666662 44555566666677773 2 55678899999999998
Q ss_pred CCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Q 003722 96 LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGL 175 (800)
Q Consensus 96 L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (800)
+..-|---.--.+++|++..- -++
T Consensus 100 ~eskdk~VR~r~lqila~~~d----~v~---------------------------------------------------- 123 (885)
T COG5218 100 TESKDKKVRKRSLQILALLSD----VVR---------------------------------------------------- 123 (885)
T ss_pred ccCcchhHHHHHHHHHHHHHH----hcc----------------------------------------------------
Confidence 877776666666666666531 000
Q ss_pred ccccccCCCccccccccccccccCCCCChhH-HHHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHh
Q 003722 176 GEYLTRSSDTNARSSDLNGARFTSGKTNDDV-KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVKRIVKPLLFIL 252 (800)
Q Consensus 176 de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl-~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p--~~~l~~~v~pLv~LL 252 (800)
++|+++ ..|+..+...+.-|-++|-.+|+.++.++.. ...=.++++.|+.++
T Consensus 124 -------------------------eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~v 178 (885)
T COG5218 124 -------------------------EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIV 178 (885)
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 133333 4577778888889999999999999876532 122245566667777
Q ss_pred cCC--CcchHHHHHHHH
Q 003722 253 RSS--GASKYVVLCNIQ 267 (800)
Q Consensus 253 ~s~--~ei~yvvL~~I~ 267 (800)
..+ .|+|-.+|-+|.
T Consensus 179 qnDPS~EVRr~allni~ 195 (885)
T COG5218 179 QNDPSDEVRRLALLNIS 195 (885)
T ss_pred hcCcHHHHHHHHHHHee
Confidence 653 478888877764
No 96
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=78.97 E-value=1.1e+02 Score=36.85 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=43.4
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-cCCCccHHHHHHH
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAA 72 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL-~D~dp~Vv~aAl~ 72 (800)
+.-.++..+.+-+-|..|-||+-|+.|+.|.-.+.- .+......++..++ +|.+.-|-.+|+.
T Consensus 129 l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~-neen~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 129 LANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL-NEENRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344566667778889999999999999999876632 11223333444444 7999888887643
No 97
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=78.04 E-value=1.7e+02 Score=36.28 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 10 ~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
..=++..|.....|+=+.||+.|.-.|.-|-.--|+.+.--|..++. -|.|.+.-+.+.|.+.+..+.
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVN-KlGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVN-KLGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH-hcCCcchhhhhhHHHHHHHHH
Confidence 44467778888999999999999999988877788444444444444 579999999999999988874
No 98
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.68 E-value=1.9e+02 Score=38.36 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=54.1
Q ss_pred CchhhHHHHHHHHHHhhcCchh---hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHhCC---C
Q 003722 25 SVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILP---D 98 (800)
Q Consensus 25 sPYVRK~AA~AI~Kly~ldpe~---~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~L~---d 98 (800)
.+--||-||++..++-.-.-+. ....|++.|.+-=-|.++.|-.+-..-...+.+++-..+..+|..+++-|. .
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 4557999999999988754322 334555555554459999998876666777888876666666655554432 3
Q ss_pred CChhh
Q 003722 99 VEEWG 103 (800)
Q Consensus 99 ~dEWg 103 (800)
..||-
T Consensus 1050 ~kewR 1054 (1702)
T KOG0915|consen 1050 SKEWR 1054 (1702)
T ss_pred chhHH
Confidence 78996
No 99
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=77.08 E-value=4.9 Score=37.26 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCCeeEEEEecCCCccCCCceEEEEEEEEecCCCceeceEeee
Q 003722 739 GNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVD 781 (800)
Q Consensus 739 g~gl~~~y~f~~~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~ 781 (800)
.+||.|.+.+.+..+ +....|.++|+|++..+|+++++.-
T Consensus 8 ~~~l~I~~~~~~~~~---~~~~~i~~~f~N~s~~~it~f~~q~ 47 (115)
T PF02883_consen 8 DNGLQIGFKSEKSPN---PNQGRIKLTFGNKSSQPITNFSFQA 47 (115)
T ss_dssp ETTEEEEEEEEECCE---TTEEEEEEEEEE-SSS-BEEEEEEE
T ss_pred CCCEEEEEEEEecCC---CCEEEEEEEEEECCCCCcceEEEEE
Confidence 468999999988333 7889999999999999999999886
No 100
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=76.84 E-value=65 Score=37.07 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=78.4
Q ss_pred hhHhHHHHHHHHHHhCC----cchHHHHHHHHHhhhccC-hhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccC
Q 003722 377 VLIQSIISIKSIIKQDP----SCHEKVIIQLFRSLDSIK-VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE 451 (800)
Q Consensus 377 vv~E~V~vi~~Il~~~P----~~~~~~i~~L~~~ld~i~-~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E 451 (800)
-+.|.+..+..|+...+ +.|...+.+..--|.... .+.-...+..++..|.. .-|..+..+++.+++.+...
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t 267 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKT 267 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCC
Confidence 47788778888887543 223333333222222222 23334455666666664 35778899999999999988
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 003722 452 AVETKLQILNTTIKVLLCAKGGDM-WTITRLFSYLLELAECDLNYDVRDRARFFK 505 (800)
Q Consensus 452 ~~~VKlqILta~aKL~~~~p~e~~-~~l~~L~q~vl~la~~D~n~DVRDRAr~y~ 505 (800)
...-....|.-+..++-..+.+.. .....+|+. +..|..+.++.|-.||.++|
T Consensus 268 ~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~-la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 268 NSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKR-LAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp -HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHTSSSHHHHHHHHGGG
T ss_pred CchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHH
Confidence 888888899999998876654333 234445553 45567888999999999886
No 101
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=75.88 E-value=3.7 Score=42.03 Aligned_cols=70 Identities=26% Similarity=0.217 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCccc
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~ 83 (800)
|.+..-+.+.+.+.++|+||.|..+..+.+.. ...+.+.+++..++.|.+..|--+.--+|.++.-...+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 45677888999999999999999998876665 34567888888889999999999988899999755433
No 102
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.46 E-value=40 Score=44.20 Aligned_cols=150 Identities=9% Similarity=0.090 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHH-HHHH
Q 003722 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS-IKSI 388 (800)
Q Consensus 310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~v-i~~I 388 (800)
++...|+-+...+.+.-..++.+|++++..++..-|.+... -++... +... .+.....|.|+++- +-.-
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~-~dvq~~-Vh~R--------~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR-PDVQEA-VHGR--------LNDSSASVREAALDLVGRF 882 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC-HHHHHH-HHHh--------hccchhHHHHHHHHHHhhh
Confidence 45566666666777777788999999999998887754311 001111 1111 11122357776542 2222
Q ss_pred HHhCCcchHHHHHHHHHhhhccCh--hhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Q 003722 389 IKQDPSCHEKVIIQLFRSLDSIKV--PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (800)
Q Consensus 389 l~~~P~~~~~~i~~L~~~ld~i~~--p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL 466 (800)
|--+|+...+.-.+++. .|.+ -..|..+|-|+-+-|...+..+. .++++-+++.+..+|...+|-...-.+.|+
T Consensus 883 vl~~~e~~~qyY~~i~e---rIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 883 VLSIPELIFQYYDQIIE---RILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred hhccHHHHHHHHHHHHh---hcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33456554444444444 3433 45788889999988765444443 456666777788999888888888999999
Q ss_pred HhhcCCC
Q 003722 467 LLCAKGG 473 (800)
Q Consensus 467 ~~~~p~e 473 (800)
|+..+..
T Consensus 959 WF~p~~~ 965 (1692)
T KOG1020|consen 959 WFTPVPE 965 (1692)
T ss_pred hccCCCc
Confidence 9987543
No 103
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.12 E-value=9.6 Score=48.29 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=82.5
Q ss_pred cccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc--
Q 003722 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-- 81 (800)
Q Consensus 4 IRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~-- 81 (800)
+|-|.+++.-...+-+-+.|.+|-|||+|.+.+..+.--+-=..+.++-+ +-.+|.|.++.+-.=|=.-|.|+.-..
T Consensus 990 v~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e-MA~cl~D~~~~IsdlAk~FF~Els~k~n~ 1068 (1251)
T KOG0414|consen 990 VRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE-MALCLEDPNAEISDLAKSFFKELSSKGNT 1068 (1251)
T ss_pred hhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH-HHHHhcCCcHHHHHHHHHHHHHhhhcccc
Confidence 57889999999999999999999999999999997765543114455555 456899999988777777788886432
Q ss_pred -ccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722 82 -FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (800)
Q Consensus 82 -~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~ 116 (800)
+.|+.....+|-+. .++|=.=..+|+.|..|..
T Consensus 1069 iynlLPdil~~Ls~~--~l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1069 IYNLLPDILSRLSNG--NLEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred hhhhchHHHHhhccC--cccchhhHHHHHHHHHHhc
Confidence 45555555566554 5666666778888888863
No 104
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.84 E-value=29 Score=41.04 Aligned_cols=111 Identities=14% Similarity=0.257 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHH-HHHHHHHhCCcchHHHHHHHHHh
Q 003722 328 RFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII-SIKSIIKQDPSCHEKVIIQLFRS 406 (800)
Q Consensus 328 ~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~-vi~~Il~~~P~~~~~~i~~L~~~ 406 (800)
+|+.+.+..+..+|--+.++ .|++.+..-+..+ ...+...|+.. .++.++++-+.....++..+.+.
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~--e~lk~~~~~l~e~----------~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~ 434 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSD--ECLKQMYIRLKEN----------NASWEEVEAALFILRAVAKNVSPEENTIMPEVLKL 434 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHccC----------CCchHHHHHHHHHHHHHhccCCccccchHHHHHHH
Confidence 57777777777777666554 5666665544421 23466777665 56777766555555566666666
Q ss_pred hhccCh-hhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhcc
Q 003722 407 LDSIKV-PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS 450 (800)
Q Consensus 407 ld~i~~-p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~ 450 (800)
+-.+.+ ...|..-+-++|+|++-.+..|.+.+-+++++...+..
T Consensus 435 i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 435 ICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQL 479 (559)
T ss_pred HhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhh
Confidence 654432 22777778999999987777888888888887755544
No 105
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.27 E-value=94 Score=35.25 Aligned_cols=247 Identities=15% Similarity=0.149 Sum_probs=151.1
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC---CCcccchhH-H
Q 003722 17 VGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGR-N 88 (800)
Q Consensus 17 Ikk~l~D~sPYVRK~AA~AI~Kly~ldpe~----~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc---P~~~~Lih~-~ 88 (800)
|..+++|. --||..|+-||-.+-.++... ....|..+. +|-+-++-.|-.+|.-|+..+. .+|-.|+|. .
T Consensus 132 i~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~sGaL~plt-rLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 132 ILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARSGALEPLT-RLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred HHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhccchhhhH-hhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 44455554 458999999999888775421 334455544 4667788888888887776654 455666663 4
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhh
Q 003722 89 YRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVS 168 (800)
Q Consensus 89 yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (800)
..-|+..++.-|.=.|-+.-..+...+-++. .
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~------------~------------------------------------ 241 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRR------------A------------------------------------ 241 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHH------------H------------------------------------
Confidence 5566677776666666555444443331110 0
Q ss_pred hhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHH-HHHH----
Q 003722 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-DVKR---- 243 (800)
Q Consensus 169 ~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~-~l~~---- 243 (800)
|+..- +.. -.++.++..|..+.++-|-..|..++-+++... +...
T Consensus 242 Rk~La----------------------qae--------p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a 291 (550)
T KOG4224|consen 242 RKILA----------------------QAE--------PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA 291 (550)
T ss_pred HHHHH----------------------hcc--------cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence 00000 000 025566666777778888888888887777542 2222
Q ss_pred -HHHHHHHHhcCCCcchHHHHHHHHHH--HHhCCc---ccc--cccccc--eeccCCchHHHHHHHHHHHhhcC--CCCH
Q 003722 244 -IVKPLLFILRSSGASKYVVLCNIQVF--AKALPH---LFV--PHYEDF--FVSSSDSYQSKALKLEILSSIVT--ESSI 311 (800)
Q Consensus 244 -~v~pLv~LL~s~~ei~yvvL~~I~~L--~~~~p~---lF~--~~l~~F--fi~~~Dp~~Ik~lKLeIL~~La~--e~Nv 311 (800)
...-|++||.++. .. .+|..+..| +..+|. +.. .+++-. ..++.|...|+.-+.+.|..|+- +.|+
T Consensus 292 g~lP~lv~Llqs~~-~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~ 369 (550)
T KOG4224|consen 292 GSLPLLVELLQSPM-GP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV 369 (550)
T ss_pred CCchHHHHHHhCcc-hh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh
Confidence 2334578887641 11 233444444 234441 221 122211 23568888899999999999984 7788
Q ss_pred HHHHH-----HHHHhhhcCChhHHHHHHHHHHHHHhhCC
Q 003722 312 SSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (800)
Q Consensus 312 ~~Il~-----EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p 345 (800)
..|.+ .|.+.+.+....|..+.--+|+.+|..-.
T Consensus 370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 87754 67788889889999999999999887643
No 106
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.14 E-value=3.8 Score=29.13 Aligned_cols=29 Identities=41% Similarity=0.453 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhCC
Q 003722 51 IEEIVGILLNDRSPGVVGAAAAAFASICP 79 (800)
Q Consensus 51 L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP 79 (800)
|.+.+..+++|.++.|-.+|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35567789999999999999999988763
No 107
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=71.56 E-value=2.1e+02 Score=34.23 Aligned_cols=193 Identities=11% Similarity=0.102 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCC
Q 003722 292 YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371 (800)
Q Consensus 292 ~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~ 371 (800)
...|..=+|.|....|...+..|.+.+..-- .. ..++.+.+..+....+.-....++.+..|++.+. +
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~--~~---~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~-------~ 407 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKK--IT---PLEAAQLLAVLPHTARYPTEEILKALFELAESPE-------V 407 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--CC---HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcc-------c
Confidence 4588888999999999999999988887631 11 1345555555555555556688999999887431 0
Q ss_pred CCCCchhHh-HHHHHHHHHHh----CCcch----HHHHHHHHHhhhcc---ChhhHHHHHHhhhccccCCCCCCcchHHH
Q 003722 372 NGEADVLIQ-SIISIKSIIKQ----DPSCH----EKVIIQLFRSLDSI---KVPEARVMIIWMVGEYSSVGVKIPRMLTT 439 (800)
Q Consensus 372 ~~~~~vv~E-~V~vi~~Il~~----~P~~~----~~~i~~L~~~ld~i---~~p~ArasiiWLlGEy~~~~~~ip~i~~d 439 (800)
. ....++. ++..+-.++++ .+..+ ...+..|.+.|... .+..-+..++=-||--|+ |.+++-
T Consensus 408 ~-~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----~~~i~~ 481 (574)
T smart00638 408 Q-KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----PSSIKV 481 (574)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----hhHHHH
Confidence 1 1224444 45566666654 23323 44555555555432 223334445566775543 544433
Q ss_pred HHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 003722 440 VLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (800)
Q Consensus 440 vLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~ 511 (800)
+..+ +.+=..-+..+|.+.+.++-++....|...++ ++--++. ....++|||=-|+ ..|+.+.
T Consensus 482 l~~~-l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~----~l~~i~~--n~~e~~EvRiaA~--~~lm~t~ 544 (574)
T smart00638 482 LEPY-LEGAEPLSTFIRLAAILALRNLAKRDPRKVQE----VLLPIYL--NRAEPPEVRMAAV--LVLMETK 544 (574)
T ss_pred HHHh-cCCCCCCCHHHHHHHHHHHHHHHHhCchHHHH----HHHHHHc--CCCCChHHHHHHH--HHHHhcC
Confidence 3333 33223345789999999999887777764332 2222222 2346888887776 4456553
No 108
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=71.36 E-value=1.1e+02 Score=30.33 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHH
Q 003722 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVE 353 (800)
Q Consensus 301 IL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~ 353 (800)
++-.| +++|+..++.||..+..+ +++.....++.|-..|...|....-+..
T Consensus 7 ~lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~ 57 (200)
T smart00543 7 LINKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYAR 57 (200)
T ss_pred HHhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 34454 478999999999987654 4578888899999999988866544433
No 109
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.25 E-value=38 Score=30.76 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc
Q 003722 293 QSKALKLEILSSIVTESS-----ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (800)
Q Consensus 293 ~Ik~lKLeIL~~La~e~N-----v~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~ 346 (800)
.||--.|-.|..|+...+ +..|+.=+...+.+.|.-+--.||++++.+|..+|.
T Consensus 18 PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 18 PVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred chHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 355555555555543332 334444444455554444444555555555555443
No 110
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.80 E-value=2.8e+02 Score=34.23 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=104.0
Q ss_pred CCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHH-Hh---cCCCccHHHHHHHHHHHhCCC---cccchhHHHHHHHHh
Q 003722 24 PSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGI-LL---NDRSPGVVGAAAAAFASICPN---NFTLIGRNYRNLCQI 95 (800)
Q Consensus 24 ~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~-LL---~D~dp~Vv~aAl~Af~eIcP~---~~~Lih~~yr~Lc~~ 95 (800)
-.+.+||- ..|++.++-++ ..+++..++.. |+ +...|.-+..=+++|.+-.|+ .-+++.+.|++|++-
T Consensus 18 ~agh~~kl----~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg 93 (892)
T KOG2025|consen 18 DAGHYSKL----LAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRG 93 (892)
T ss_pred hcchHHHH----HHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhc
Confidence 34557776 44556664423 44556666653 33 345555555555666666553 357888888998887
Q ss_pred CCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Q 003722 96 LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGL 175 (800)
Q Consensus 96 L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (800)
...-+-=-.--++.+|.+..- .
T Consensus 94 ~Eskdk~VRfrvlqila~l~d-~--------------------------------------------------------- 115 (892)
T KOG2025|consen 94 TESKDKKVRFRVLQILALLSD-E--------------------------------------------------------- 115 (892)
T ss_pred ccCcchhHHHHHHHHHHHHhc-c---------------------------------------------------------
Confidence 765554444444444444320 0
Q ss_pred ccccccCCCccccccccccccccCCCCChhH-HHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHh
Q 003722 176 GEYLTRSSDTNARSSDLNGARFTSGKTNDDV-KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDVKRIVKPLLFIL 252 (800)
Q Consensus 176 de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl-~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~--p~~~l~~~v~pLv~LL 252 (800)
...+|+|+ ..|+..+...|.-+-|+|-.+|+.++.++. |.+.=-.+++.|..++
T Consensus 116 -----------------------~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~li 172 (892)
T KOG2025|consen 116 -----------------------NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLI 172 (892)
T ss_pred -----------------------ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 01244444 456677788889999999999999887764 3333346778889999
Q ss_pred cC--CCcchHHHHHHHHHHHHhCC
Q 003722 253 RS--SGASKYVVLCNIQVFAKALP 274 (800)
Q Consensus 253 ~s--~~ei~yvvL~~I~~L~~~~p 274 (800)
.+ ++|+|-.+|.+|..=....|
T Consensus 173 qnDpS~EVRRaaLsnI~vdnsTlp 196 (892)
T KOG2025|consen 173 QNDPSDEVRRAALSNISVDNSTLP 196 (892)
T ss_pred hcCCcHHHHHHHHHhhccCcccch
Confidence 75 57899999999865333333
No 111
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=69.28 E-value=33 Score=36.98 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhhcCch-hhH-HHHHHHHHHHhcC-CCccHHHHHHHHHHHhCC--CcccchhHH
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQE-EIT-SAIEEIVGILLND-RSPGVVGAAAAAFASICP--NNFTLIGRN 88 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe-~~~-~~L~~~l~~LL~D-~dp~Vv~aAl~Af~eIcP--~~~~Lih~~ 88 (800)
+.-|.+.+.+++|-||..|..|+.-+---.+. ... .-+..+++..+.+ -+..|--+++.++..+.- +.=.++.+.
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~ 135 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANY 135 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhh
Confidence 34577889999999999999988855322221 111 2233333333433 466777889999998852 222455667
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhhh
Q 003722 89 YRNLCQILPDVEEWGQILLIEILLRYV 115 (800)
Q Consensus 89 yr~Lc~~L~d~dEWgQi~iL~lL~rY~ 115 (800)
...|+++|..-++=.|+.+|++|...+
T Consensus 136 i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 136 IPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 788899999999999999999999886
No 112
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.09 E-value=45 Score=36.64 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhC---CCcccchhH--------HHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722 51 IEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGR--------NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (800)
Q Consensus 51 L~~~l~~LL~D~dp~Vv~aAl~Af~eIc---P~~~~Lih~--------~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~ 116 (800)
+..+|..+ -+++.++...+..+.+++ |.+.++++. .|..+++.+..-|.+-+...+.+|+....
T Consensus 60 ~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 60 FLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp --HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44445443 457788888888888886 555666554 68889998888899999999999888764
No 113
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=68.92 E-value=9.9 Score=45.37 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=60.3
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~ 80 (800)
++++..|.+++.+..-+. +-...++++|..|+.|+.++-..+|+...+.+..++ +-.+.++-|-.+|+.++++..|.
T Consensus 470 LGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~--~n~~e~~EvRiaA~~~lm~t~P~ 546 (574)
T smart00638 470 LGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY--LNRAEPPEVRMAAVLVLMETKPS 546 (574)
T ss_pred hhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCC
Confidence 467788888888887776 566778999999999999887778844555555553 12467888999999999998887
Q ss_pred c
Q 003722 81 N 81 (800)
Q Consensus 81 ~ 81 (800)
.
T Consensus 547 ~ 547 (574)
T smart00638 547 V 547 (574)
T ss_pred H
Confidence 5
No 114
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=68.66 E-value=65 Score=42.95 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=84.0
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHH-HHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcccccc-
Q 003722 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKE-DVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPH- 280 (800)
Q Consensus 207 ~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~--p~~-~l~~~v~pLv~LL~s--~~ei~yvvL~~I~~L~~~~p~lF~~~- 280 (800)
.-||..+..||+|.++.|+--++.+|.++- -.. .-+.+++.|+.++.+ +.|+. .+|..+..|+..+|+...+|
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~~fa 512 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQPFA 512 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHHHHH
Confidence 557778888999999988777776665432 122 235688999988743 45665 78999999999998755554
Q ss_pred --cccceeccC--CchHHHHHHHHHHHhhcC--CCCHHHHHHHH----HHhhhcCChhHHHHH----HHHHHHHHhh
Q 003722 281 --YEDFFVSSS--DSYQSKALKLEILSSIVT--ESSISSVFKEF----QDYIRDPDRRFAADT----VAAIGLCARK 343 (800)
Q Consensus 281 --l~~Ffi~~~--Dp~~Ik~lKLeIL~~La~--e~Nv~~Il~EL----~~Yv~~~d~~f~~~a----I~aIg~lA~k 343 (800)
++...=..+ .+.+||++ .+||+.|+- ..+...|-+|| +.++.+.+..+++.- +..|+.+|.+
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la~~ 588 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLAAK 588 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHH
Confidence 433221222 25678887 899999873 22344566664 556677777666653 3455555443
No 115
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.51 E-value=19 Score=42.57 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=36.9
Q ss_pred cChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCC
Q 003722 410 IKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (800)
Q Consensus 410 i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~ 472 (800)
-..+..|++++..+|=+|.-. -...+-|+|.-+.. +-...||...+-+.+-+...+.+
T Consensus 597 shN~hVR~g~AvaLGiacag~--G~~~a~diL~~L~~---D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 597 SHNFHVRAGVAVALGIACAGT--GDKVATDILEALMY---DTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ccchhhhhhhHHHhhhhhcCC--ccHHHHHHHHHHhh---CcHHHHHHHHHHHHHHHHhhcCc
Confidence 345778888888888887521 12346677776653 33456777777776666665543
No 116
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.34 E-value=1e+02 Score=37.68 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=69.2
Q ss_pred HHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHH
Q 003722 340 CARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419 (800)
Q Consensus 340 lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~Arasi 419 (800)
.+.|-+...+++++++..++..= ...+.+...|.. .++.++|-.......+=.+.+..+
T Consensus 51 ~vkKresi~dRIl~fla~fv~sl------~q~d~e~DlV~~---~f~hlLRg~Eskdk~VRfrvlqil------------ 109 (892)
T KOG2025|consen 51 LVKKRESIPDRILSFLARFVESL------PQLDKEEDLVAG---TFYHLLRGTESKDKKVRFRVLQIL------------ 109 (892)
T ss_pred eeccCCCcHHHHHHHHHHHHHhh------hccCchhhHHHH---HHHHHHhcccCcchhHHHHHHHHH------------
Confidence 35566788888888888877530 011112223333 245555544333333222222221
Q ss_pred HhhhccccCCCCCCcc-hHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHH
Q 003722 420 IWMVGEYSSVGVKIPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVR 498 (800)
Q Consensus 420 iWLlGEy~~~~~~ip~-i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVR 498 (800)
.-++|+-+. ++. ....+...+..+..+-.+.||.|.+-+..|+-= .|.+..-.+..++..++ .+|.++|||
T Consensus 110 a~l~d~~~e----idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~li---qnDpS~EVR 181 (892)
T KOG2025|consen 110 ALLSDENAE----IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKDLI---QNDPSDEVR 181 (892)
T ss_pred HHHhccccc----cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHH---hcCCcHHHH
Confidence 234454443 222 122234455567777788999999999998852 22222212445554443 489999998
Q ss_pred h
Q 003722 499 D 499 (800)
Q Consensus 499 D 499 (800)
-
T Consensus 182 R 182 (892)
T KOG2025|consen 182 R 182 (892)
T ss_pred H
Confidence 4
No 117
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=68.20 E-value=1.8e+02 Score=31.45 Aligned_cols=102 Identities=11% Similarity=0.203 Sum_probs=60.8
Q ss_pred HHHHHHHhcC--CCcchHHHHHHHHHHHHhCC---------cccccccc-cceeccCCchH--HHHHHHHHHHhhcC-CC
Q 003722 245 VKPLLFILRS--SGASKYVVLCNIQVFAKALP---------HLFVPHYE-DFFVSSSDSYQ--SKALKLEILSSIVT-ES 309 (800)
Q Consensus 245 v~pLv~LL~s--~~ei~yvvL~~I~~L~~~~p---------~lF~~~l~-~Ffi~~~Dp~~--Ik~lKLeIL~~La~-e~ 309 (800)
+..++.++.+ +|..--++.+.+..+....+ +.+.-|+- .|--..+||.- =..+|..+...|+. +.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~ 204 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL 204 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh
Confidence 3344555543 34444444555555555544 12223332 23334578843 44667777777765 33
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc
Q 003722 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (800)
Q Consensus 310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~ 346 (800)
=.+..+.=|.+=+.+.....+.++.+++..|+.+|+.
T Consensus 205 fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 205 FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 3356666666666666777889999999999999974
No 118
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.16 E-value=56 Score=36.94 Aligned_cols=249 Identities=13% Similarity=0.132 Sum_probs=144.6
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcc---cch-
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF---TLI- 85 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~----~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~---~Li- 85 (800)
+.++.|.++-++--||+.|--++..+-+..... +... +..|..||.-.|+.|--=|..|+..|.-++- -|.
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~-lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGG-LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCC-chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 345667888888899999999988876653311 1111 2455668888888888888888877764431 111
Q ss_pred --hHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhh
Q 003722 86 --GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL 163 (800)
Q Consensus 86 --h~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 163 (800)
.+..++|+.++.+-++-.|+..=..|...+-.+. +..|
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~e--------------------------------------- 287 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQRE--------------------------------------- 287 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhH---------------------------------------
Confidence 1245566666666666666554444433331110 0000
Q ss_pred hhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH--hcCCHHH-
Q 003722 164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW--IMSPKED- 240 (800)
Q Consensus 164 ~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~--~l~p~~~- 240 (800)
+.+ .+ =|..+..|||+..--.+++.+-|+- .+.|...
T Consensus 288 -------iv~--ag-------------------------------~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 288 -------IVE--AG-------------------------------SLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred -------HHh--cC-------------------------------CchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 000 00 0122334567776667777777773 3445332
Q ss_pred ---HHHHHHHHHHHhc-CCC-cchHHHHHHHHHHHHhCC---c-ccccc-cccceeccCC-chHHHHHHHHHHHhhcCCC
Q 003722 241 ---VKRIVKPLLFILR-SSG-ASKYVVLCNIQVFAKALP---H-LFVPH-YEDFFVSSSD-SYQSKALKLEILSSIVTES 309 (800)
Q Consensus 241 ---l~~~v~pLv~LL~-s~~-ei~yvvL~~I~~L~~~~p---~-lF~~~-l~~Ffi~~~D-p~~Ik~lKLeIL~~La~e~ 309 (800)
=....+||++||+ .++ |+|.-+...+.-++..+. . +|..- +....++.-| |-.++..-=--+..|+-.+
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 1346789999997 444 499998888888876432 2 23222 2333333334 6677777666677776666
Q ss_pred CHHH------HHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 003722 310 SISS------VFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (800)
Q Consensus 310 Nv~~------Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k 343 (800)
|.+. |+.-|..+..+...+++-.+..|++.+..+
T Consensus 408 ~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 408 NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 6543 233344555566667777788888766654
No 119
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=67.29 E-value=11 Score=40.36 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=55.0
Q ss_pred HHHHHhhcCCC--CchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhCCCcc-cchh
Q 003722 14 LVAVGKCARDP--SVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN----DRSPGVVGAAAAAFASICPNNF-TLIG 86 (800)
Q Consensus 14 ~~aIkk~l~D~--sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~----D~dp~Vv~aAl~Af~eIcP~~~-~Lih 86 (800)
...+++.+.|+ ..|||-.|.-|+..+....| ..++.++..+..++. .++..|.++=+.....++|..+ ..|.
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~-~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~ 191 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGP-ISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIR 191 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHH
Confidence 34677778776 68999999999999999988 666666666666553 3444566877778889998863 3455
Q ss_pred HHHH
Q 003722 87 RNYR 90 (800)
Q Consensus 87 ~~yr 90 (800)
+.|.
T Consensus 192 ~~f~ 195 (249)
T PF06685_consen 192 KAFE 195 (249)
T ss_pred HHHH
Confidence 5554
No 120
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.20 E-value=22 Score=39.72 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=71.3
Q ss_pred hcCCCCchhhHHHHHHHHHHhhcCchhhH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc------ccchhHH
Q 003722 20 CARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN------FTLIGRN 88 (800)
Q Consensus 20 ~l~D~sPYVRK~AA~AI~Kly~ldpe~~~-----~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~------~~Lih~~ 88 (800)
.+.+.++-||+.||.-|..+.+-+|..+. ..+..++..|-.|.+-.|...|+.|+....-+. +-.++.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G- 210 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG- 210 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-
Confidence 89999999999999999999999995322 234445554445777777789999988775332 222333
Q ss_pred HHHHHHhCCC--CChhhHHHHHHHHHhhhh
Q 003722 89 YRNLCQILPD--VEEWGQILLIEILLRYVV 116 (800)
Q Consensus 89 yr~Lc~~L~d--~dEWgQi~iL~lL~rY~~ 116 (800)
|.-|.+.|.. -+-=.|++++.++..+..
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 7777777777 788889999999988863
No 121
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.68 E-value=67 Score=31.53 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=66.7
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhcCCCcchHHHHHHHHHHHHhCCcccccccccceec
Q 003722 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS 287 (800)
Q Consensus 209 LL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~-LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~ 287 (800)
+-+++.+.+...|-+++++.+-.+=. . ...-+.+++.|.+ |-+.++++++.+|..+-.++..++..|...+..+
T Consensus 5 iekATse~l~~~dw~~il~icD~I~~-~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask--- 79 (144)
T cd03568 5 VEKATDEKLTSENWGLILDVCDKVKS-D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR--- 79 (144)
T ss_pred HHHHcCccCCCcCHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH---
Confidence 44556666777777777777655432 1 2223456666654 4446799999999999999999998887664221
Q ss_pred cCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHhhCCc
Q 003722 288 SSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRD-PDRRFAADTVAAIGLCARKLPK 346 (800)
Q Consensus 288 ~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~-~d~~f~~~aI~aIg~lA~k~p~ 346 (800)
..++||...+.. .+..++.++..-|..-+..|+.
T Consensus 80 -------------------------~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 80 -------------------------DFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred -------------------------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 123333333333 4555666666666666666653
No 122
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=66.32 E-value=1.2e+02 Score=38.88 Aligned_cols=254 Identities=15% Similarity=0.132 Sum_probs=129.3
Q ss_pred CChhHHHHHHhhh--------hhc-cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---CcchHHHHHHHHHH
Q 003722 202 TNDDVKLLLQCTS--------PLL-WSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSS---GASKYVVLCNIQVF 269 (800)
Q Consensus 202 ~d~Dl~lLL~~~~--------pLL-~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL~s~---~ei~yvvL~~I~~L 269 (800)
+|||..+|-+... ..| +-++----|+|++.+=.+... ....+|.+.|.+. .-||+-+...+.+.
T Consensus 628 iDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~----~s~~~L~rtl~der~FyrIR~~Aa~aLak~ 703 (1180)
T KOG1932|consen 628 IDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST----ASRSALTRTLEDERYFYRIRIAAAFALAKT 703 (1180)
T ss_pred eCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc----hhHHHHHHHHhhcchhhHHHHHHHHHHHHh
Confidence 4788776655441 223 344444444554443322211 1125566665432 46888888888877
Q ss_pred HHhCCcccc-ccccc----ceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHH-HHHHHHHhh
Q 003722 270 AKALPHLFV-PHYED----FFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTV-AAIGLCARK 343 (800)
Q Consensus 270 ~~~~p~lF~-~~l~~----Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI-~aIg~lA~k 343 (800)
+...+..-. +|+.. +||..+-+ +.-.+|+.. ++.| |++.++ .|++.+--+
T Consensus 704 a~~~~dwtG~~~Li~~F~~~fc~k~st-------------IpKsNnF~~----~q~Y-------fvq~~iP~a~a~lR~~ 759 (1180)
T KOG1932|consen 704 ANGESDWTGPPHLIQFFRKKFCSKDST-------------IPKSNNFSN----FQEY-------FVQCAIPVAFASLRGR 759 (1180)
T ss_pred hcccccccChHHHHHHHHHHhccccCC-------------CCCcCcccc----HHHH-------HHHHhhHHHHHHhccc
Confidence 755332221 23333 33333222 234555554 6666 777777 888888878
Q ss_pred CCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHH------hC------Ccc---hHHHHHHHHHhhh
Q 003722 344 LPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIK------QD------PSC---HEKVIIQLFRSLD 408 (800)
Q Consensus 344 ~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~------~~------P~~---~~~~i~~L~~~ld 408 (800)
--....-+..+||+||..+ ++...+. ++.++++..|..+-..+- .| +.. ...++....+.|.
T Consensus 760 ~g~cp~~V~~FlLdLlkyN--DNs~N~Y-SD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei~r~L~ 836 (1180)
T KOG1932|consen 760 EGKCPKEVKAFLLDLLKYN--DNSFNSY-SDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEITRLLN 836 (1180)
T ss_pred cCCChHHHHHHHHHHhhcc--cCCCCcc-chHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHHHHHHH
Confidence 8888889999999999864 1111111 133444433333322221 01 110 1111222222221
Q ss_pred --ccC-------hhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcH--HHHHHHHHHHHHHHhhcCCCChHH
Q 003722 409 --SIK-------VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAV--ETKLQILNTTIKVLLCAKGGDMWT 477 (800)
Q Consensus 409 --~i~-------~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~--~VKlqILta~aKL~~~~p~e~~~~ 477 (800)
.+. .-.+ -..+-.+|..+++ |. .|. +.++|+.|.. .+++.++++.+-+--.. .
T Consensus 837 ~e~l~pS~k~ii~~~~-l~~~~~l~k~~hl----~s-~p~----~~~~~a~~~~~vd~r~~a~~~~v~~~~~~------~ 900 (1180)
T KOG1932|consen 837 MEKLMPSFKHIIKVSA-LKAIRELQKSGHL----PS-LPE----LLESYAEEGSFVDVRICAEELNVDLGGVD------G 900 (1180)
T ss_pred HHhhchhhhceEEeee-chhhhhhhhcccc----cc-Cch----hhhccccccchhhhHHHhhhhhhhhcccC------C
Confidence 110 0011 1124556666543 22 222 4457777763 46666666655432211 1
Q ss_pred HHHHHHHHHHHHccCCChHHHhHHH
Q 003722 478 ITRLFSYLLELAECDLNYDVRDRAR 502 (800)
Q Consensus 478 l~~L~q~vl~la~~D~n~DVRDRAr 502 (800)
....+.|++++..+|.++=+|++--
T Consensus 901 ~~~~l~~~leil~~~~dp~~R~~i~ 925 (1180)
T KOG1932|consen 901 SPDDLAYILEILENDPDPVIRHKIL 925 (1180)
T ss_pred ChHHHHHHhhhcccCcchHHHHHHH
Confidence 2346788999999999998887643
No 123
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=65.69 E-value=11 Score=38.18 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=53.1
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722 15 VAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 15 ~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~ 80 (800)
..+.+-+.+.++|+||+|..+..+.+... ...+.+.+++..++.|.+..|--+..-+|.+++-.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 46788899999999999999999988762 24567888899999999999988888888888643
No 124
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.46 E-value=18 Score=45.94 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHH
Q 003722 238 KEDVKRIVKPLLFILR-----SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSIS 312 (800)
Q Consensus 238 ~~~l~~~v~pLv~LL~-----s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~ 312 (800)
...+.+++.-++-+++ ++|++|..+--++.++.......+..|+..||
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llf--------------------------- 966 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLF--------------------------- 966 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------------------------
Confidence 4456666655555553 24666666655555555444455666665553
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhH-hHHHHHHHHHHh
Q 003722 313 SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLI-QSIISIKSIIKQ 391 (800)
Q Consensus 313 ~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~-E~V~vi~~Il~~ 391 (800)
.=+. +.+++-++..+|.++|-+|.+||...+-.-..|..-|..+ ...|. -|+.++-+||-+
T Consensus 967 ---time---ksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~------------~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 967 ---TIME---KSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDE------------SPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred ---HHHh---cCCCceeeecchheccchhhhcccccchhhHHHHHHhcCc------------cHHHHHHHHHHHHHHHHh
Confidence 1111 2456667888999999999999988776667777766521 12333 378889999888
Q ss_pred CCcchHHHHHHHHHhhhccChhhHHHHHH-hhhccccCCCCCCcchHHHHHHHHHhh
Q 003722 392 DPSCHEKVIIQLFRSLDSIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWC 447 (800)
Q Consensus 392 ~P~~~~~~i~~L~~~ld~i~~p~Arasii-WLlGEy~~~~~~ip~i~~dvLr~l~~~ 447 (800)
+--..+..+..++.+|.+- ....+.++ -.+-|-++.++.+=+.+||++-.|-+.
T Consensus 1029 dmiKVKGql~eMA~cl~D~--~~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1029 DMIKVKGQLSEMALCLEDP--NAEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred hhhHhcccHHHHHHHhcCC--cHHHHHHHHHHHHHhhhcccchhhhchHHHHhhccC
Confidence 7666666677888877642 12222333 356666666555555678888887765
No 125
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=64.27 E-value=3.7e+02 Score=33.65 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=51.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
...-.+....|..|-||+++|--+.++-+.-+.. ....+...+..|++|..-.|.-+|+.++..+.
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~ 304 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLL 304 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHH
Confidence 3445677889999999999999888887766533 45556667777888888889999998887774
No 126
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.36 E-value=70 Score=31.93 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccc
Q 003722 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDF 284 (800)
Q Consensus 241 l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~F 284 (800)
+.+++.+++.++.. ....-.+|..+..+...+|..|.||...+
T Consensus 114 l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 114 LPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 56777788888765 56667889999999999999999987543
No 127
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=63.30 E-value=4.3e+02 Score=34.08 Aligned_cols=107 Identities=20% Similarity=0.344 Sum_probs=73.6
Q ss_pred ccchHHHHHHH----HhhcCCCCchhhHHHHHHHHHHhhc-CchhhHHHHHHHHH----HHhcCCCccHHHHHHHHHHHh
Q 003722 7 HVISPLVLVAV----GKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVG----ILLNDRSPGVVGAAAAAFASI 77 (800)
Q Consensus 7 ~~I~~iv~~aI----kk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~~L~~~l~----~LL~D~dp~Vv~aAl~Af~eI 77 (800)
+.|+|+++.++ +++-.-..-.||-+|++.+--+++- .|.+.++.+..+.. .-+=|++-.+-.||.+||.|.
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN 498 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence 35555555543 3444556677999999998888876 45334443333333 334599999999999999998
Q ss_pred C------CCcccch-----------hHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 003722 78 C------PNNFTLI-----------GRNYRNLCQILPDVEEWGQILLIEILLR 113 (800)
Q Consensus 78 c------P~~~~Li-----------h~~yr~Lc~~L~d~dEWgQi~iL~lL~r 113 (800)
. |..++|+ ...|+.+|.-+..++.+-+.++=++++.
T Consensus 499 VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 499 VGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK 551 (1133)
T ss_pred hccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc
Confidence 5 4444443 3458888888888888888777666664
No 128
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=63.27 E-value=1.6e+02 Score=37.05 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHhhcC-chhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 17 VGKCARDPSVFVRKCAANALPKLHELR-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 17 Ikk~l~D~sPYVRK~AA~AI~Kly~ld-pe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+-+++.|.+-.+|+.+|+||.-+-..| | ++-+++...+.++|.+.+..-+-+|+.++.|+.
T Consensus 95 Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 95 LLNLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred HHhhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 345556999999999999999998875 7 778889999999999988888888999887763
No 129
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=62.30 E-value=1.5e+02 Score=34.63 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=52.3
Q ss_pred cchHHHHHHHHHHHHhCC-ccccccccc-----ceeccC-CchHHHHHHHHHHHhhcCCC------CHHHHHHHHHHhhh
Q 003722 257 ASKYVVLCNIQVFAKALP-HLFVPHYED-----FFVSSS-DSYQSKALKLEILSSIVTES------SISSVFKEFQDYIR 323 (800)
Q Consensus 257 ei~yvvL~~I~~L~~~~p-~lF~~~l~~-----Ffi~~~-Dp~~Ik~lKLeIL~~La~e~------Nv~~Il~EL~~Yv~ 323 (800)
+-+--+|..|..|..... .+...|+.. |-++.+ ....+|.+.|.+|..+++.. ..+..+..+.+-..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 345577888888766442 344555543 223332 35679999999999988754 44566677777777
Q ss_pred cCChhHHHHHHHH
Q 003722 324 DPDRRFAADTVAA 336 (800)
Q Consensus 324 ~~d~~f~~~aI~a 336 (800)
+.+++.++.|..+
T Consensus 382 ds~~~v~~~Aeed 394 (516)
T KOG2956|consen 382 DSQDEVMRVAEED 394 (516)
T ss_pred CCchhHHHHHHHH
Confidence 7777777666644
No 130
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.62 E-value=31 Score=41.79 Aligned_cols=77 Identities=19% Similarity=0.114 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc-CchhhHH---HH----HHHHHHHhcCCCccHHHHHHHHHHHhCCCcc
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITS---AI----EEIVGILLNDRSPGVVGAAAAAFASICPNNF 82 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~---~L----~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~ 82 (800)
.+.-+.+-+++.=++--||-.||+-..-+|-+ ||+.+++ .+ .+.+..||.|.-|+|-+.|+--...+.-.=|
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 44456777899999999999999999999987 7753222 22 2357789999999999998877666654445
Q ss_pred cchhH
Q 003722 83 TLIGR 87 (800)
Q Consensus 83 ~Lih~ 87 (800)
.+|.+
T Consensus 253 e~iP~ 257 (1005)
T KOG1949|consen 253 EMIPP 257 (1005)
T ss_pred HHcCH
Confidence 55544
No 131
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=61.13 E-value=22 Score=35.30 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhH------HHHHHHHhC
Q 003722 23 DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR------NYRNLCQIL 96 (800)
Q Consensus 23 D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~------~yr~Lc~~L 96 (800)
...+-||-.|.+++.|+++..++.-.+.+.+++..++.+.+..-...|+.++..+.|--+++-.. ....|..++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 56778999999999999877665566778889999998777778888888999998876553211 112233333
Q ss_pred C--CCChhhHHHHHHHHHhhh
Q 003722 97 P--DVEEWGQILLIEILLRYV 115 (800)
Q Consensus 97 ~--d~dEWgQi~iL~lL~rY~ 115 (800)
. .-++=-|..++++|..=|
T Consensus 96 ~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHT
T ss_pred hcccCCHHHHHHHHHHHHHHH
Confidence 2 345555777777776544
No 132
>PHA02664 hypothetical protein; Provisional
Probab=60.42 E-value=6.8 Score=42.75 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=12.9
Q ss_pred HHHHHhhCCccHHHHHHHHHHH
Q 003722 337 IGLCARKLPKMANTCVEGLLAL 358 (800)
Q Consensus 337 Ig~lA~k~p~~a~~~l~~LL~L 358 (800)
=-+|++.-|.++...+-.|.++
T Consensus 245 ecvcce~rphvartavwtlaei 266 (534)
T PHA02664 245 ECVCCELRPHVARTAVWTLAEI 266 (534)
T ss_pred ceeeecccCCchhhhhhhHHHH
Confidence 3456666666666655555554
No 133
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=60.39 E-value=1.1e+02 Score=36.29 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHH---------hhhc------CChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Q 003722 297 LKLEILSSIVTESSISSVFKEFQD---------YIRD------PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQ 361 (800)
Q Consensus 297 lKLeIL~~La~e~Nv~~Il~EL~~---------Yv~~------~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~ 361 (800)
+++.=|..=+|.+|+..|++||.. |+++ ..+-|.-.-..-++.+-.+||.+....+.-|+-....
T Consensus 166 ksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r 245 (739)
T KOG2140|consen 166 KSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKR 245 (739)
T ss_pred HHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence 344556666889999999999964 2221 1111222222334556778999998888877655544
Q ss_pred hhccccccCCCCCCchh-HhHHHHHHHHHHhCCcchHHHHHHHH-HhhhccChhhHHHHHH
Q 003722 362 ELLTSDIESGNGEADVL-IQSIISIKSIIKQDPSCHEKVIIQLF-RSLDSIKVPEARVMII 420 (800)
Q Consensus 362 ~~~~~~~~~~~~~~~vv-~E~V~vi~~Il~~~P~~~~~~i~~L~-~~ld~i~~p~Arasii 420 (800)
.| ..+..++ .-++..|.+|+ ++.-.|+-++.+++ -.|+.-++.....+|.
T Consensus 246 ~f--------~RnDk~~c~~~~kfiahLi-nq~VahEIv~Leil~lLLe~PTddSvevaI~ 297 (739)
T KOG2140|consen 246 SF--------RRNDKVSCLNASKFIAHLI-NQQVAHEIVALEILTLLLERPTDDSVEVAIA 297 (739)
T ss_pred Hh--------cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 32 1222222 22233344444 34445665544444 4566666655555543
No 134
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=59.56 E-value=56 Score=35.32 Aligned_cols=185 Identities=14% Similarity=0.259 Sum_probs=90.9
Q ss_pred hhhhccCCC---hHHHHHHHHHHHhcCCH----HHHHHHHHHH--HHHhcCCCcchHHHHHHHHHHHHhCCccccccccc
Q 003722 213 TSPLLWSHN---SAVVLAAAGVHWIMSPK----EDVKRIVKPL--LFILRSSGASKYVVLCNIQVFAKALPHLFVPHYED 283 (800)
Q Consensus 213 ~~pLL~S~N---sAVVlaaa~~~~~l~p~----~~l~~~v~pL--v~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~ 283 (800)
+-|+||+.. ++.+-+.+.+|-+++|+ .+-.|+-++| +..+.+.|+++-..|+ ..-|-.+-|+++.
T Consensus 29 La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~------a~iplyLyPfL~t 102 (262)
T PF04078_consen 29 LAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLK------AHIPLYLYPFLNT 102 (262)
T ss_dssp HHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHH------TTGGGGGHHHHH-
T ss_pred hhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHH------cCchhhehhhhhc
Confidence 457788665 35666778888888875 3345665554 3445677888776554 3345555666532
Q ss_pred ceeccCCc-hHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhh
Q 003722 284 FFVSSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQE 362 (800)
Q Consensus 284 Ffi~~~Dp-~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~ 362 (800)
-. .+-| .|+|.--|-++..|+..+. .+|+ .|+.+. +++--..+.+-.=.+..-.++.-+++- +|..+
T Consensus 103 t~--k~r~~E~LRLtsLGVIgaLvK~d~-~evi----~fLl~t--EiiplcLr~me~GselSKtvAtfIlqK---IL~dd 170 (262)
T PF04078_consen 103 TS--KTRPFEYLRLTSLGVIGALVKTDD-PEVI----SFLLQT--EIIPLCLRIMEFGSELSKTVATFILQK---ILLDD 170 (262)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHTT---HHHH----HHHHCT--THHHHHHHHHHHS-HHHHHHHHHHHHH---HHHSH
T ss_pred cc--cccccchhhHhHHHHHHHHHcCCc-HHHH----HHHHhh--chHHHHHHHHHhccHHHHHHHHHHHHH---HHcch
Confidence 21 1223 6899999999999986443 3344 454443 344433333321111111122222222 22211
Q ss_pred hccccccCCCCCCchhHhHHHHHHHHH---HhCCcchHHHHHHHHHhhhccC-hhhHHHHHH
Q 003722 363 LLTSDIESGNGEADVLIQSIISIKSII---KQDPSCHEKVIIQLFRSLDSIK-VPEARVMII 420 (800)
Q Consensus 363 ~~~~~~~~~~~~~~vv~E~V~vi~~Il---~~~P~~~~~~i~~L~~~ld~i~-~p~Arasii 420 (800)
.|..|+.....-......++..++ .+.|. ...+++++++.-.+. +|.||.++-
T Consensus 171 ---~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS--~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 171 ---VGLNYICQTAERFFAVAMVLNKMVEQLVKQPS--PRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp ---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred ---hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHccCHHHHHHHH
Confidence 122222211111111223444444 34553 356777777666554 588888754
No 135
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=58.91 E-value=1.6e+02 Score=31.93 Aligned_cols=68 Identities=15% Similarity=0.319 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc--cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHh
Q 003722 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (800)
Q Consensus 315 l~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~--~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~ 391 (800)
++.|..|+++.|...+.+++..++.+..++|. ....-+++|+++..... .+...+..++..+..|++.
T Consensus 1 V~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---------~D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 1 VQSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---------DDHACVQPALKGLLALVKM 70 (262)
T ss_pred CcchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---------ccHhhHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999985 34455677777765432 1233566677778778744
No 136
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=56.87 E-value=3.1e+02 Score=30.35 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=54.0
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhhc--Cchh---hHHHHHHHHHHHhcCC--CccHHHHHHHHHHHhC----CCcc
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHEL--RQEE---ITSAIEEIVGILLNDR--SPGVVGAAAAAFASIC----PNNF 82 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~l--dpe~---~~~~L~~~l~~LL~D~--dp~Vv~aAl~Af~eIc----P~~~ 82 (800)
+...-..+.|++.-.|-.|.-+|.+++.. .++. ....|.+.+.+.++-. .-.++++-+.++.-|. .+.-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34455567889999999999999998854 3422 3456677777777533 3344554444555443 2333
Q ss_pred cchhHHHHHHHHhCCCCCh
Q 003722 83 TLIGRNYRNLCQILPDVEE 101 (800)
Q Consensus 83 ~Lih~~yr~Lc~~L~d~dE 101 (800)
+++......|.+.+.+-..
T Consensus 125 ei~~~~~~~L~~~l~d~s~ 143 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSA 143 (309)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 4444555566677766543
No 137
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.83 E-value=5.3e+02 Score=33.01 Aligned_cols=98 Identities=17% Similarity=0.296 Sum_probs=57.6
Q ss_pred hhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHhhcCCC----ChHHHHHHHHHHHH
Q 003722 413 PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK-SEAVETKLQILNTTIKVLLCAKGG----DMWTITRLFSYLLE 487 (800)
Q Consensus 413 p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~-~E~~~VKlqILta~aKL~~~~p~e----~~~~l~~L~q~vl~ 487 (800)
.-.||...|++|.|++.-=..+......++...+.+. +-+..||.+.- ++.+.|+..... ..+.+..+.|.+|.
T Consensus 476 g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAa-lALq~fI~~~~~~~e~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 476 GYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAA-LALQSFISNQEQADEKVSAHVPPIMQELLK 554 (1010)
T ss_pred hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHH-HHHHHHHhcchhhhhhHhhhhhHHHHHHHH
Confidence 3467777899999996432445666667776677776 44556776654 344555554321 22234455555555
Q ss_pred HHccCCChH-----------------------HHhHHHHHHHHccCC
Q 003722 488 LAECDLNYD-----------------------VRDRARFFKKLFSHN 511 (800)
Q Consensus 488 la~~D~n~D-----------------------VRDRAr~y~~LL~~~ 511 (800)
+.+.=.+-| .+.-|.-+++++..+
T Consensus 555 L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~ 601 (1010)
T KOG1991|consen 555 LSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTS 601 (1010)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhcc
Confidence 543221222 356788889999863
No 138
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.67 E-value=4e+02 Score=31.54 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=74.6
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh---hHH-HHHHHHHHHhcCCCccHHHHHHHHHHHhCCC--c
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITS-AIEEIVGILLNDRSPGVVGAAAAAFASICPN--N 81 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~---~~~-~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~--~ 81 (800)
....-++..+-.-++|++.-+|.-|+-++...+...|+. +.. .+..++..|..|.+..|+--|+.++.-+.|. .
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 344567777888899999999999999999999998853 333 4677788888888899999999999888764 2
Q ss_pred ccc---hhHHHHHHHHhCCCCChhh---HHHHHHHHHhhh
Q 003722 82 FTL---IGRNYRNLCQILPDVEEWG---QILLIEILLRYV 115 (800)
Q Consensus 82 ~~L---ih~~yr~Lc~~L~d~dEWg---Qi~iL~lL~rY~ 115 (800)
+++ +-+..-++-+...+.+.=. -.++...|..|+
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 332 2223334444444433322 344455555555
No 139
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.10 E-value=5.2e+02 Score=32.69 Aligned_cols=179 Identities=15% Similarity=0.095 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc----cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHH
Q 003722 313 SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK----MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (800)
Q Consensus 313 ~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~----~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~I 388 (800)
+.+.|-..++.+.-..++..+++-+.+++++-.. .-..+++..++.|+.+ +.++---+|..+..+
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-----------dsyvyLnaI~gv~~L 795 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-----------DSYVYLNAIRGVVSL 795 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-----------CceeeHHHHHHHHHH
Confidence 4578888888888888999999999999984322 2347788888888742 233222233333344
Q ss_pred HHhCCcchHHHHHHHHHhhhc----------cChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHH
Q 003722 389 IKQDPSCHEKVIIQLFRSLDS----------IKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQ 458 (800)
Q Consensus 389 l~~~P~~~~~~i~~L~~~ld~----------i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlq 458 (800)
...||+ .++..|.+...+ +...+|.-.++==.||-+. -| -..++.-+....-+-..+-|+.
T Consensus 796 cevy~e---~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~-----~y-~~~Li~tfl~gvrepd~~~RaS 866 (982)
T KOG4653|consen 796 CEVYPE---DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF-----KY-KAVLINTFLSGVREPDHEFRAS 866 (982)
T ss_pred HHhcch---hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH-----HH-HHHHHHHHHHhcCCchHHHHHh
Confidence 455886 567777774433 2234444444444555321 11 1122222332323223456777
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 003722 459 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (800)
Q Consensus 459 ILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~ 511 (800)
-+..+.-++.......++-+..+++.++.+++.|.++=||--|.-..+.+-.+
T Consensus 867 S~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 867 SLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 77777766655543334467788899999999999999998887766666544
No 140
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=55.10 E-value=72 Score=37.88 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=49.4
Q ss_pred HHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHH
Q 003722 388 IIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTT 463 (800)
Q Consensus 388 Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~ 463 (800)
|.|+.|+..++-+..|+..+.+-+....+..|+-+|..|+... .|. ..+.+|.+++.|..-... .++|.|++
T Consensus 226 I~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~--l~~-~~E~l~e~~~~~p~~~~~-~a~i~T~~ 297 (851)
T KOG3723|consen 226 IKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVA--LNS-FLEMLKEIGERFPYLTGQ-MARIYTAV 297 (851)
T ss_pred HHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccc--hhh-HHHHHHHHHHhCCCccHH-HHHHHHHh
Confidence 4567788888888888888877667778888889999997642 333 456788888777655432 23444443
No 141
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=55.09 E-value=63 Score=38.86 Aligned_cols=194 Identities=12% Similarity=0.183 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccC
Q 003722 291 SYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIES 370 (800)
Q Consensus 291 p~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~ 370 (800)
...+|..=+|+|....|...+..|.+.+.. .... -.++++.|..++.....-....|+.+..|++.....
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~---~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~----- 446 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLT---DDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVK----- 446 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S----HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCC---HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcccc-----
Confidence 357899999999999998888888877776 2222 223455566555554455567888888887643110
Q ss_pred CCCCCchhHh-HHHHHHHHHHh---C-----------CcchHHHHHHHHHhhhcc---ChhhHHHHHHhhhccccCCCCC
Q 003722 371 GNGEADVLIQ-SIISIKSIIKQ---D-----------PSCHEKVIIQLFRSLDSI---KVPEARVMIIWMVGEYSSVGVK 432 (800)
Q Consensus 371 ~~~~~~vv~E-~V~vi~~Il~~---~-----------P~~~~~~i~~L~~~ld~i---~~p~ArasiiWLlGEy~~~~~~ 432 (800)
....+.+ ++..+-.++.+ + ....++++..|.+.+... .+..-+..++=-||--|
T Consensus 447 ---~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----- 518 (618)
T PF01347_consen 447 ---NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----- 518 (618)
T ss_dssp ---T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----
T ss_pred ---CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-----
Confidence 1123443 55566666653 2 122334455555555422 12344445555666544
Q ss_pred CcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 003722 433 IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (800)
Q Consensus 433 ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~ 511 (800)
.|.+++.+..++. .-...+..+|.+.+.++-|+-...|.. +..++--++.- ...++|||==| |..|+.+.
T Consensus 519 ~~~~i~~l~~~i~-~~~~~~~~~R~~Ai~Alr~~~~~~~~~----v~~~l~~I~~n--~~e~~EvRiaA--~~~lm~~~ 588 (618)
T PF01347_consen 519 HPESIPVLLPYIE-GKEEVPHFIRVAAIQALRRLAKHCPEK----VREILLPIFMN--TTEDPEVRIAA--YLILMRCN 588 (618)
T ss_dssp -GGGHHHHHTTST-TSS-S-HHHHHHHHHTTTTGGGT-HHH----HHHHHHHHHH---TTS-HHHHHHH--HHHHHHT-
T ss_pred CchhhHHHHhHhh-hccccchHHHHHHHHHHHHHhhcCcHH----HHHHHHHHhcC--CCCChhHHHHH--HHHHHhcC
Confidence 3555554444333 333557789999999988875555432 33333333321 33578888888 46667664
No 142
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.89 E-value=1.9e+02 Score=35.93 Aligned_cols=139 Identities=18% Similarity=0.245 Sum_probs=79.7
Q ss_pred HHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhC--CcchHHHHHHHHHhhhccCh
Q 003722 335 AAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD--PSCHEKVIIQLFRSLDSIKV 412 (800)
Q Consensus 335 ~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~--P~~~~~~i~~L~~~ld~i~~ 412 (800)
.|+-.+.+..|--+-..|..|+.+.... ....+.+++..++.|+-+. |++ +.....-+.+..++.
T Consensus 215 tA~~LlvqesPvh~lk~lEtLls~c~KK-----------sk~~a~~~l~~LkdlfI~~LLPdR--KLk~f~qrp~~~l~~ 281 (988)
T KOG2038|consen 215 TAMTLLVQESPVHNLKSLETLLSSCKKK-----------SKRDALQALPALKDLFINGLLPDR--KLKYFSQRPLLELTN 281 (988)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHhccCcch--hhHHHhhChhhhccc
Confidence 4444555555656667777777766532 1224667777888877653 663 222222333333333
Q ss_pred hh--HHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhcc--------CcHHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 003722 413 PE--ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS--------EAVETKLQILNTTIKVLLCAKGGDMWTITRLF 482 (800)
Q Consensus 413 p~--ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~--------E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~ 482 (800)
-. -|.-++|-. ++.|+.++.+|.+ -=.+||.++|+++.-++...|++....+..++
T Consensus 282 ~~~~~k~Ll~Wyf--------------E~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lV 347 (988)
T KOG2038|consen 282 KRLRDKILLMWYF--------------EHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLV 347 (988)
T ss_pred cccccceehHHHH--------------HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 22 233345632 4555555555542 22579999999999999888876544333333
Q ss_pred HHHHHHHccCCChHHHhHHHHHH
Q 003722 483 SYLLELAECDLNYDVRDRARFFK 505 (800)
Q Consensus 483 q~vl~la~~D~n~DVRDRAr~y~ 505 (800)
.. .-|.+.-|-..|-...
T Consensus 348 NK-----lGDpqnKiaskAsylL 365 (988)
T KOG2038|consen 348 NK-----LGDPQNKIASKASYLL 365 (988)
T ss_pred Hh-----cCCcchhhhhhHHHHH
Confidence 32 2566777777776543
No 143
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=54.52 E-value=1.5e+02 Score=28.40 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=45.2
Q ss_pred HhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCccccccc
Q 003722 211 QCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (800)
Q Consensus 211 ~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL-~s~~ei~yvvL~~I~~L~~~~p~lF~~~l 281 (800)
+++.+.+...+-+.+++.+-.+-.- ...-+.+++.|..-| .++|++++.+|..+-.++..++..|...+
T Consensus 7 kATs~~~~~~D~~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 7 RATSPSLEEPDWALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred HHcCcccCCccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4444555556666666666554322 122345666666444 46789999999999999998887776654
No 144
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.27 E-value=39 Score=41.06 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=76.7
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc----Cchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCccc
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL----RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l----dpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~ 83 (800)
|++-..--+.+.+.|+-|-||.+|..++.|++.. -|.. ..+-+-.++..+-.|+...|-.+.+..+.++.-+-
T Consensus 217 i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np-- 294 (1005)
T KOG1949|consen 217 IIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP-- 294 (1005)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--
Confidence 4556667788999999999999999999998764 5633 44445555666667888889888888888885332
Q ss_pred chhHHHHHHHH----hCCCCChhhHHHHHHHHHhhh
Q 003722 84 LIGRNYRNLCQ----ILPDVEEWGQILLIEILLRYV 115 (800)
Q Consensus 84 Lih~~yr~Lc~----~L~d~dEWgQi~iL~lL~rY~ 115 (800)
+-|+.+..++. .|.|-.|=-.+...++|.+..
T Consensus 295 ~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 23444444444 355788888999999998764
No 145
>PF05536 Neurochondrin: Neurochondrin
Probab=54.26 E-value=4.6e+02 Score=31.51 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=95.3
Q ss_pred CchHHHHHHHHHHHhhcCCCCH---HHHHH---HHHHhhhcCCh-hHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhh
Q 003722 290 DSYQSKALKLEILSSIVTESSI---SSVFK---EFQDYIRDPDR-RFAADTVAAIGLCARKLPKMANTCVEGLLALIRQE 362 (800)
Q Consensus 290 Dp~~Ik~lKLeIL~~La~e~Nv---~~Il~---EL~~Yv~~~d~-~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~ 362 (800)
++..-+.+.+.||..+|++.++ +.++. -|.+-+...+. +.+.++.+.+..++ ..|.-... |++
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~a-------Ll~-- 138 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKA-------LLE-- 138 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHH-------HHh--
Confidence 5678889999999999887665 23333 22333333333 44444444444444 22221111 111
Q ss_pred hccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHH
Q 003722 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442 (800)
Q Consensus 363 ~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr 442 (800)
..+|..+..++.++|...+..+.-|...+.... . -.|- ++ +.....++.
T Consensus 139 ----------------~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~-~-----~~~~--~~-------~~~l~~il~ 187 (543)
T PF05536_consen 139 ----------------SGAVPALCEIIPNQSFQMEIALNLLLNLLSRLG-Q-----KSWA--ED-------SQLLHSILP 187 (543)
T ss_pred ----------------cCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcc-h-----hhhh--hh-------HHHHHHHHH
Confidence 113445667776766555555444444333211 0 0121 22 122345677
Q ss_pred HHHhhhccCcHHHHHHHHHHHHHHHhhcCC---CC---hHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 003722 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKG---GD---MWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (800)
Q Consensus 443 ~l~~~F~~E~~~VKlqILta~aKL~~~~p~---e~---~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL 508 (800)
.+...|..-+...|.+++..+..++-..|. .. ..-+..+..++-.+-+.-..+.-|+-|....+.|
T Consensus 188 ~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 188 SLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASL 259 (543)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 788889888888999999999999887742 11 1112334444333333455677777776655444
No 146
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=54.15 E-value=1.6e+02 Score=31.65 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=56.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhhcCChh-HH-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchh
Q 003722 301 ILSSIVTESSISSVFKEFQDYIRDPDRR-FA-ADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVL 378 (800)
Q Consensus 301 IL~~La~e~Nv~~Il~EL~~Yv~~~d~~-f~-~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv 378 (800)
||+.+++-+ +..|+.|+.+.+.+ ++ ..+++|++.++..-|..-+.|++++..++... ++++..++
T Consensus 104 ilasv~~G~-----~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~--------l~~~~~~~ 170 (249)
T PF06685_consen 104 ILASVGDGD-----IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF--------LERNPSFL 170 (249)
T ss_pred HHHHHhCCC-----HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--------hccCchHH
Confidence 455544433 45566777776653 44 46779999999999999999999999998742 12233355
Q ss_pred HhHHHHHHHHHHhCCcchHHHHHHHH
Q 003722 379 IQSIISIKSIIKQDPSCHEKVIIQLF 404 (800)
Q Consensus 379 ~E~V~vi~~Il~~~P~~~~~~i~~L~ 404 (800)
|-.++ ..++..+|..-...|.++.
T Consensus 171 ~~~Lv--~~~~dL~~~EL~~~I~~~f 194 (249)
T PF06685_consen 171 WGSLV--ADICDLYPEELLPEIRKAF 194 (249)
T ss_pred HHHHH--HHHHhcCHHHhHHHHHHHH
Confidence 55443 4555667754333344443
No 147
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=51.51 E-value=13 Score=42.95 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=30.9
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL 42 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l 42 (800)
.++|-+++++-++...+|.-|||+|++|+.-+|..
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 45677788888999999999999999999999875
No 148
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=51.49 E-value=69 Score=32.91 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCchhhHHHHHHHHHHhhc-Cchh---hHHHHHHHHHHHhcCCCccHHHHHHHHHHHh---CCCcccchhHHHHHHHHhC
Q 003722 24 PSVFVRKCAANALPKLHEL-RQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNNFTLIGRNYRNLCQIL 96 (800)
Q Consensus 24 ~sPYVRK~AA~AI~Kly~l-dpe~---~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eI---cP~~~~Lih~~yr~Lc~~L 96 (800)
.+|| |=-|..++-.+-.. .++. -.++|+.-|..-|+-+++.|+.+++.++..+ .+--=.-+-++||+|+..|
T Consensus 51 ~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 51 EHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred CccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4555 45566666666655 4422 4567777788899999999999999999998 4433345778999987643
No 149
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=51.36 E-value=25 Score=38.01 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=12.0
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHH
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPK 38 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~K 38 (800)
+.|+-+++.|.|+.-|-.+|+++.+
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQ 213 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQ 213 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhh
Confidence 3444444555555555555544443
No 150
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.33 E-value=28 Score=33.20 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHH--HHHHHhhhccCcHHHHHHHHHHHHHHHhh
Q 003722 393 PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTV--LKYLAWCFKSEAVETKLQILNTTIKVLLC 469 (800)
Q Consensus 393 P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dv--Lr~l~~~F~~E~~~VKlqILta~aKL~~~ 469 (800)
.+..-.++..|++.|+.-.+|...|....=||||+...+.--.++.++ -..+..-...+.++||.+.|.+.-|+.+.
T Consensus 38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 333446788888988777788888888899999986432111111111 01112233467889999999999998764
No 151
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=50.64 E-value=59 Score=31.71 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=62.3
Q ss_pred HHHHHHHHhhh--ccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccC-------cHHHHHHHHHHHHHHHh
Q 003722 398 KVIIQLFRSLD--SIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE-------AVETKLQILNTTIKVLL 468 (800)
Q Consensus 398 ~~i~~L~~~ld--~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E-------~~~VKlqILta~aKL~~ 468 (800)
+.+.+|+..|+ .+.......++.-++++.+=..+ |.| ...++.+.++|..- ......++|+++.+.|-
T Consensus 6 ~l~~qLi~sL~~~~~~~~~~~~sL~~i~s~~pYi~d--~~I-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~F~ 82 (135)
T PF13981_consen 6 KLAKQLIKSLDQGDVDISNVALSLNDILSKPPYIND--PEI-ASWLQKLCENFFDNFNLQLMNKDKLNQAILNFFIDRFS 82 (135)
T ss_dssp HHHHHHHCCCHTTTTSCHHHHHHHHHHHTSTTTTC---HHH-HHHHHHHHHHHHHHHHHHC---HHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHccccchhhHhhHhHHHHHhccCcccCC--HHH-HHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHH
Confidence 34556666663 33333355667788888654322 332 24455555444321 22345589999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 003722 469 CAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (800)
Q Consensus 469 ~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL 508 (800)
+.|+-+..--+.+.| ++-.|.+..+..++..|+.+|.-.
T Consensus 83 r~pelm~~~N~~FIQ-~i~~~~~~~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 83 RQPELMISNNGAFIQ-LIAQAMTHGDDEIKQKARDLYKKY 121 (135)
T ss_dssp HTTTHHHHTHHHHHH-HHHHHCC-TSCCCHHHHHHHHHHH
T ss_pred hCHhHHHHcccHHHH-HHHHHHHhccHHHHHHHHHHHHHH
Confidence 999754322233444 445567766889999998766544
No 152
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=50.60 E-value=22 Score=24.82 Aligned_cols=14 Identities=50% Similarity=0.427 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHH
Q 003722 26 VFVRKCAANALPKL 39 (800)
Q Consensus 26 PYVRK~AA~AI~Kl 39 (800)
+.||+.||.++.++
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 47999999999987
No 153
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=49.39 E-value=88 Score=34.04 Aligned_cols=73 Identities=22% Similarity=0.116 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhh---------HHHHHHHHHHHhc--------CCCccHHHH
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI---------TSAIEEIVGILLN--------DRSPGVVGA 69 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~---------~~~L~~~l~~LL~--------D~dp~Vv~a 69 (800)
..-.|.+++++-..+.|.+|.+|..++.++..+-...|... .+.+.+.+..+|. |.+..++..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 34578899999999999999999999999999888655333 4456666777777 888888888
Q ss_pred HHHHHHHhCC
Q 003722 70 AAAAFASICP 79 (800)
Q Consensus 70 Al~Af~eIcP 79 (800)
|.-++..+++
T Consensus 194 ay~~L~~L~~ 203 (282)
T PF10521_consen 194 AYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHH
Confidence 8888888743
No 154
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.12 E-value=7.4e+02 Score=32.40 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=71.3
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHHhCCcccccccccce-e----ccCCchH
Q 003722 225 VLAAAG-VHWIMSPKEDVKRIVKPLLFILRSS-----GASKYVVLCNIQVFAKALPHLFVPHYEDFF-V----SSSDSYQ 293 (800)
Q Consensus 225 Vlaaa~-~~~~l~p~~~l~~~v~pLv~LL~s~-----~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ff-i----~~~Dp~~ 293 (800)
++.+++ .|++.+|.+....+...+.-+.+.. +-.++-.|+-+..++...+ ...+...| + -.++..-
T Consensus 593 ~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~---e~~vs~l~~v~~~~e~~~~~~ 669 (1176)
T KOG1248|consen 593 VLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQT---ESQVSKLFTVDPEFENSSSTK 669 (1176)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhcccc---chhHHHHHHhhHHhhccccHH
Confidence 455555 7778888766555555555554322 3344555555555543333 22222211 1 1244566
Q ss_pred HHHHHHHHHHhhcCC--------CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC
Q 003722 294 SKALKLEILSSIVTE--------SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (800)
Q Consensus 294 Ik~lKLeIL~~La~e--------~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p 345 (800)
|+++.-+||..|..- .++..|.+.|..=+.+.+.-.++....++..+-...+
T Consensus 670 vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~ 729 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS 729 (1176)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc
Confidence 999999999988765 5667777777776666666666677777777777777
No 155
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=48.67 E-value=51 Score=41.80 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=59.4
Q ss_pred ccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCC-CccHHHHHHHHHHHhCCC
Q 003722 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPN 80 (800)
Q Consensus 5 Rv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~-dp~Vv~aAl~Af~eIcP~ 80 (800)
-||+|++-++.-+-.+++|..-.||=.||-++.|+....|-+..++.+.-+-.+++-- ++.+--+|..||.|+.-.
T Consensus 334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 3899999999999999999999999999999999999988555555444333366532 356666788889988533
No 156
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=47.73 E-value=1.5e+02 Score=28.98 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=46.9
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCccccccc
Q 003722 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (800)
Q Consensus 208 lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL-~s~~ei~yvvL~~I~~L~~~~p~lF~~~l 281 (800)
++-+++.+.+...+-+.+++.+-.+=. . +..-+.++++|.+-| ..++++++.+|..+..++..+...|...+
T Consensus 8 ~I~kATs~~l~~~dw~~ileicD~In~-~-~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 8 LIEKATSELLGEPDLASILEICDMIRS-K-DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred HHHHHcCcccCccCHHHHHHHHHHHhC-C-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 344555666666666777776655421 1 122345666665444 46799999999999999998887776554
No 157
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.64 E-value=2.6e+02 Score=27.36 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=52.3
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCccccccc
Q 003722 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHY 281 (800)
Q Consensus 208 lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p~lF~~~l 281 (800)
++-+++.+.+...|-+.+++.+-.+- -.+ ..-+.++++|.+-|. .++++++.+|..+-.++..+...|...+
T Consensus 5 ~iekAT~~~l~~~dw~~ileicD~In-~~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 5 WLNKATNPSNREEDWEAIQAFCEQIN-KEP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHcCccCCCCCHHHHHHHHHHHH-cCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 45567778888888888888877653 233 233456667765554 4689999999999999999988777654
No 158
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.30 E-value=6.6e+02 Score=31.58 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=77.9
Q ss_pred HHHHHHHHhc---CCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhh-cCCCCHHHHHHHHH
Q 003722 244 IVKPLLFILR---SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSI-VTESSISSVFKEFQ 319 (800)
Q Consensus 244 ~v~pLv~LL~---s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~L-a~e~Nv~~Il~EL~ 319 (800)
-.+||+.-|. .++|+--++|..+..+..+.- |=.-..|+...-..-+.|--.+ -+++||..++.-+.
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd---------~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e 132 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD---------SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE 132 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---------chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 4468887774 368887788999887775442 0001123333444444443332 37888888776555
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhCCccHHHH-------HHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhC
Q 003722 320 DYIRDPDRRFAADTVAAIGLCARKLPKMANTC-------VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (800)
Q Consensus 320 ~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~-------l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~ 392 (800)
+| |..+++.+|+-|..+-..-|.-...| +..|+++|.. ..+.+=.++|.-|+.+++-+
T Consensus 133 ~~----DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-----------srE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 133 EF----DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-----------SREPIRNEAILLLSELVKDN 197 (970)
T ss_pred hh----chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-----------hhhhhchhHHHHHHHHHccC
Confidence 55 77788888887776655555444443 4566777652 12223456777788888888
Q ss_pred Ccc
Q 003722 393 PSC 395 (800)
Q Consensus 393 P~~ 395 (800)
|..
T Consensus 198 ~~I 200 (970)
T KOG0946|consen 198 SSI 200 (970)
T ss_pred chH
Confidence 764
No 159
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=45.98 E-value=2.2e+02 Score=35.82 Aligned_cols=71 Identities=21% Similarity=0.085 Sum_probs=55.0
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCc---hh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ---EE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp---e~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+|++=+...+...+.|+.+==||.|+-.+.++..-.. .. -...+...+...+.|.+..|++.|+..+..||
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia 323 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIA 323 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 4566677888999999999999999999998876433 11 22334444555678999999999999999997
No 160
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=45.78 E-value=1.5e+02 Score=33.87 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=7.9
Q ss_pred hcCCCcchHHHHHHHHH
Q 003722 252 LRSSGASKYVVLCNIQV 268 (800)
Q Consensus 252 L~s~~ei~yvvL~~I~~ 268 (800)
|..+.+++-.+++.+..
T Consensus 35 L~~~~~vraa~yRilRy 51 (371)
T PF14664_consen 35 LSDSKEVRAAGYRILRY 51 (371)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 33345555555544433
No 161
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=44.47 E-value=32 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHH
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKL 39 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kl 39 (800)
+++.+-+++.+.++-||+.|+-|+..+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456666777788888888888777654
No 162
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=44.30 E-value=5.3e+02 Score=29.38 Aligned_cols=220 Identities=15% Similarity=0.188 Sum_probs=116.5
Q ss_pred hHHHHHHhhhhhccCCChHHHHHHHHHHHhc-CCHHHHHHHHH----HH-HHHhcCC--Cc-chHHHHHHHHHHHHh--C
Q 003722 205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM-SPKEDVKRIVK----PL-LFILRSS--GA-SKYVVLCNIQVFAKA--L 273 (800)
Q Consensus 205 Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l-~p~~~l~~~v~----pL-v~LL~s~--~e-i~yvvL~~I~~L~~~--~ 273 (800)
+...++..+..++-+.+.-|+.++-|+.-|+ .....++.+.+ .+ ++-|..+ .+ =|--+|+-+..++.. .
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 4455677777656666699999999998554 44444444433 11 1222211 11 233456656555543 1
Q ss_pred CcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHH--
Q 003722 274 PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC-- 351 (800)
Q Consensus 274 p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~-- 351 (800)
++.| | ..|++=+-.-+.+.++.++..++..+..+|...|...-+|
T Consensus 102 ~~~~-------------~--------------------~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG 148 (371)
T PF14664_consen 102 PKEI-------------P--------------------RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGG 148 (371)
T ss_pred cccC-------------C--------------------HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCC
Confidence 1111 2 2233334444444677788888888888888888765544
Q ss_pred HHHHHHHHHhhhccccccCCCCCCchhHhHHH-HHHHHHHhCCcchHHH-----HHHHHHhhhcc-----C-------hh
Q 003722 352 VEGLLALIRQELLTSDIESGNGEADVLIQSII-SIKSIIKQDPSCHEKV-----IIQLFRSLDSI-----K-------VP 413 (800)
Q Consensus 352 l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~-vi~~Il~~~P~~~~~~-----i~~L~~~ld~i-----~-------~p 413 (800)
+.+|++.+-.+ ..-+.|++. ++-.++ ..|..+..+ +..|..-+-+. . -.
T Consensus 149 ~~~L~~~l~d~------------~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~ 215 (371)
T PF14664_consen 149 IRVLLRALIDG------------SFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQ 215 (371)
T ss_pred HHHHHHHHHhc------------cHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHH
Confidence 56666654321 112455443 333333 344332211 22232222111 1 12
Q ss_pred hHHHHHHhhhccccCCCC-CCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCC
Q 003722 414 EARVMIIWMVGEYSSVGV-KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (800)
Q Consensus 414 ~ArasiiWLlGEy~~~~~-~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~ 472 (800)
.++.+|+-++--+..+.- ..+.. .-+|-++..+.....++|-.||.++..++-..+.
T Consensus 216 ~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 216 ASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 234455555555543221 01111 3467777777777788999999999999876543
No 163
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=43.35 E-value=86 Score=29.03 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=59.1
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCccccccccc--ce
Q 003722 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYED--FF 285 (800)
Q Consensus 209 LL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL-~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~--Ff 285 (800)
+-+++.+-++..+...+++.+.+...- +...+.++..|..-| ..++.++|-+|..|-.++......|..++.. |.
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~--~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~ 82 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINET--NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFA 82 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCC--CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHH
Confidence 334555556666667777766665322 234556666665434 4578899999999999998888777655421 11
Q ss_pred --------ecc--CC-chHHHHHHHHHHHhhc
Q 003722 286 --------VSS--SD-SYQSKALKLEILSSIV 306 (800)
Q Consensus 286 --------i~~--~D-p~~Ik~lKLeIL~~La 306 (800)
... .+ +..||.+.++++...+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 83 VELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 111 12 4567777777766543
No 164
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.11 E-value=69 Score=31.02 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=47.6
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCCcchHHHHHHHHHHHHhCCccccccc
Q 003722 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (800)
Q Consensus 207 ~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv-~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l 281 (800)
.++-+++.+.+.+.+-+.++..+-.+=.- ...-+.+++.|. +|-..+|++++.+|..+-.++..++..|...+
T Consensus 8 ~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 8 ELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35566677777777777777766543322 223355666665 44456799999999999999998877776554
No 165
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=42.93 E-value=75 Score=32.38 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=61.8
Q ss_pred cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc---CchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccc
Q 003722 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL 84 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l---dpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~L 84 (800)
.|++--+..|-+++.++++-||..|.--+.-+-+. .| ..-+..|-.|..|.++.+-.-|...+.+++...-++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 45677788888999999999999999999888875 56 234445556889999999999999999998666566
Q ss_pred hhHHH
Q 003722 85 IGRNY 89 (800)
Q Consensus 85 ih~~y 89 (800)
++..|
T Consensus 80 v~~~~ 84 (187)
T PF12830_consen 80 VESRY 84 (187)
T ss_pred HHHHH
Confidence 66544
No 166
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.90 E-value=9.1e+02 Score=31.65 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=36.1
Q ss_pred Hhhhhhcc--CCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCC
Q 003722 211 QCTSPLLW--SHNSAVVLAAAGVHWIM---------SPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALP 274 (800)
Q Consensus 211 ~~~~pLL~--S~NsAVVlaaa~~~~~l---------~p~~~l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p 274 (800)
+.+.|+++ |.|-.|+-.++.|+-.+ .....+..+...|...+...|-+|--+++.|..++..-|
T Consensus 96 ~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 96 NILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCC
Confidence 34444444 55556655555553211 011223344444555567788899999999888875444
No 167
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=42.36 E-value=40 Score=34.59 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=42.0
Q ss_pred ccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHh
Q 003722 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL 59 (800)
Q Consensus 5 Rv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL 59 (800)
++--++|-++.+||+++..++|-|.+++..++.++-...+ .--+.|..++..||
T Consensus 73 kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~-~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 73 KILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD-MVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 4455778899999999999999999999999999855444 33356666666654
No 168
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=42.13 E-value=4.5e+02 Score=27.90 Aligned_cols=111 Identities=13% Similarity=0.187 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC--Cccc----ccccccc---eeccCCchHHHHHHHHHHHhhcCCCC
Q 003722 241 VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL--PHLF----VPHYEDF---FVSSSDSYQSKALKLEILSSIVTESS 310 (800)
Q Consensus 241 l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~--p~lF----~~~l~~F---fi~~~Dp~~Ik~lKLeIL~~La~e~N 310 (800)
+..+...++.++.+ ++.++..++.-+..++... +.-- ...-..| .|..+.|. ++..+|+-=.
T Consensus 41 ~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~-l~~~~Le~Ea------- 112 (239)
T PF11935_consen 41 MNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPL-LNPQQLEAEA------- 112 (239)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SS-S-HHHHHHHH-------
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCc-CCHHHHHHHH-------
Confidence 56677777888765 4669999999887776543 1110 0111122 23344443 6666666433
Q ss_pred HHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722 311 ISSVFKEFQDYIRDPD--RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (800)
Q Consensus 311 v~~Il~EL~~Yv~~~d--~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~ 360 (800)
..+++.|..++.+.. ..+....+.+++.+|.+=|.....++..|+.+-.
T Consensus 113 -~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 113 -NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNP 163 (239)
T ss_dssp -HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 367888888887665 5688888999999999999999999999999754
No 169
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.77 E-value=88 Score=34.75 Aligned_cols=64 Identities=27% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQE----EITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe----~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~ 80 (800)
+..|-+.+.+.+|-|||.|+.-+.-+--- +- .....++.-+.+|+.|.++ ..-|+.|+-++..+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 45677889999999999999655443222 10 0123455556779999998 67777788777655
No 170
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=41.45 E-value=3e+02 Score=32.76 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHh-------------CC-------------cccc
Q 003722 226 LAAAGVHWIMSPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKA-------------LP-------------HLFV 278 (800)
Q Consensus 226 laaa~~~~~l~p~~~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~-------------~p-------------~lF~ 278 (800)
+.|..+++.-+|....+ ....|+++.. .++|+.|-+|.+|.-|... .| .+|.
T Consensus 104 IsalTLLVq~sP~h~~k-~letLls~C~kksrn~a~q~l~~lKDLfi~gllp~rklry~k~q~~lsk~v~~k~l~~~~fe 182 (821)
T COG5593 104 ISALTLLVQRSPSHNAK-NLETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNRKLRYFKNQPGLSKEVQNKYLKQRIFE 182 (821)
T ss_pred hhhhHhhhccCcchHHH-HHHHHHHHHhcccccHHHHHHHHHHHHHhcccCcchhhHhhhcCcchhhhhcchHHHHHHHH
Confidence 33444444444432222 2234555554 3677888888877655432 11 2466
Q ss_pred ccccccee--------ccCCc-hHHHHHHHHHHHhhcCCCCH--HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCcc
Q 003722 279 PHYEDFFV--------SSSDS-YQSKALKLEILSSIVTESSI--SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM 347 (800)
Q Consensus 279 ~~l~~Ffi--------~~~Dp-~~Ik~lKLeIL~~La~e~Nv--~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~ 347 (800)
.+++.||. +..|| .|||..-+..+|.|....-. ..+++=+..=+.+.+..+..+|-..|-.+-...|.+
T Consensus 183 sflk~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~m 262 (821)
T COG5593 183 SFLKNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPGM 262 (821)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCch
Confidence 77766554 46888 49999999999988765533 345555556666767778888888888888888988
Q ss_pred HHHHHHHHHHHHH
Q 003722 348 ANTCVEGLLALIR 360 (800)
Q Consensus 348 a~~~l~~LL~LL~ 360 (800)
-..+++.+.++.-
T Consensus 263 k~VV~d~Iedf~f 275 (821)
T COG5593 263 KEVVLDGIEDFYF 275 (821)
T ss_pred hHHHHhhhhHhee
Confidence 8888888877654
No 171
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=41.24 E-value=8.7e+02 Score=30.98 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=73.5
Q ss_pred cchHHHHHHHHhhcCC-CCchhhHHHHHHHHHHhhcC---chhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc--
Q 003722 8 VISPLVLVAVGKCARD-PSVFVRKCAANALPKLHELR---QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-- 81 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~D-~sPYVRK~AA~AI~Kly~ld---pe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~-- 81 (800)
....+++..++.++.. -+|.-=-.|..+|+|.-.-. |.-....+...+..+.-|..|.|..+|+.+|+-.|.-.
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl 524 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL 524 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceec
Confidence 3445566666666654 36665558999999877653 32233345555666667999999999999999999332
Q ss_pred ccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhh
Q 003722 82 FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (800)
Q Consensus 82 ~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~ 115 (800)
..+..+..+-|.+...+..+=.-..+|+.|..-+
T Consensus 525 ~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv 558 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVV 558 (1005)
T ss_pred cccchHHHHHHHHHcccccHHHHHHHHHHHHHHh
Confidence 2344456677777777777777777777777655
No 172
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=39.26 E-value=6.4e+02 Score=28.88 Aligned_cols=216 Identities=15% Similarity=0.198 Sum_probs=113.6
Q ss_pred cchHHHHHHHHHHHHhCCcccccc----ccccee--ccCCchHHHHHHHHHHHhhcCCC----CHHHHHHHHHHhh-hcC
Q 003722 257 ASKYVVLCNIQVFAKALPHLFVPH----YEDFFV--SSSDSYQSKALKLEILSSIVTES----SISSVFKEFQDYI-RDP 325 (800)
Q Consensus 257 ei~yvvL~~I~~L~~~~p~lF~~~----l~~Ffi--~~~Dp~~Ik~lKLeIL~~La~e~----Nv~~Il~EL~~Yv-~~~ 325 (800)
.-+++.|.. ..++..+|+.--+. ++.+.- ...+...+|.-.+++|..|+|.- -+..+++.+..-. ...
T Consensus 164 ~~~~~~l~~-~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 164 QSRLVILFS-AILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred cccHHHHHH-HHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 345555544 44445555443332 222221 12333679999999999999972 2445555555544 333
Q ss_pred ChhHHHHHHHHHHH----HHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCc-------
Q 003722 326 DRRFAADTVAAIGL----CARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPS------- 394 (800)
Q Consensus 326 d~~f~~~aI~aIg~----lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~------- 394 (800)
+..-...++..+.- +..|..+.+..+++.|+.++..+. -...+.++ +.-|+.-.++
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~----------~g~~aA~~---f~il~~d~~~~l~~~~~ 309 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSPE----------LGQQAAKA---FGILLSDSDDVLNKENH 309 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCChh----------hHHHHHHH---HhhHhcCcHHhcCcccc
Confidence 44444455544322 344666677788888999886320 01123332 2222221111
Q ss_pred ----------chHHHHHHHHHhhhccCh---hhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHH
Q 003722 395 ----------CHEKVIIQLFRSLDSIKV---PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILN 461 (800)
Q Consensus 395 ----------~~~~~i~~L~~~ld~i~~---p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILt 461 (800)
.+..++..|.+.+..-.+ +....++..|+..-...+ ..++ ++.++..+.+.....+..++...|.
T Consensus 310 a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~v-l~~~-l~~LlPLLlqsL~~~~~~v~~s~L~ 387 (415)
T PF12460_consen 310 ANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSV-LLPE-LPTLLPLLLQSLSLPDADVLLSSLE 387 (415)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHH-HHHH-HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 134445566555554332 223344455665321100 1222 4677888888888888889999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHH
Q 003722 462 TTIKVLLCAKGGDMWTITRLFSYLLEL 488 (800)
Q Consensus 462 a~aKL~~~~p~e~~~~l~~L~q~vl~l 488 (800)
+..-+.-..|+-..+-+..++..++++
T Consensus 388 tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 388 TLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 887776655443233344555555443
No 173
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=39.18 E-value=1.6e+02 Score=30.11 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHh-CCcccccccccceec----------------cCCc-hHHHHHHHHHHHhhcCC
Q 003722 258 SKYVVLCNIQVFAKA-LPHLFVPHYEDFFVS----------------SSDS-YQSKALKLEILSSIVTE 308 (800)
Q Consensus 258 i~yvvL~~I~~L~~~-~p~lF~~~l~~Ffi~----------------~~Dp-~~Ik~lKLeIL~~La~e 308 (800)
+|..+|..+..|++. .|..|-.|...||.- ..|| .-+|...+.+|..|-..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 567788888888887 666666555555532 3555 46777777777766443
No 174
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=39.16 E-value=4.4e+02 Score=33.99 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=62.4
Q ss_pred hhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccC
Q 003722 413 PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECD 492 (800)
Q Consensus 413 p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D 492 (800)
-+.|-.++-+|||-+...-.-+..+-.+|+.++..|..-+-++=..+|..+.+++++.|+- ...+..+++.+..+ +.+
T Consensus 519 ietk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt-~lrM~~~Le~i~rk-K~a 596 (1128)
T KOG2051|consen 519 IETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPET-KLRMRVFLEQIKRK-KRA 596 (1128)
T ss_pred hhhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhH-HHHHHHHHHHHHHH-HHH
Confidence 3455566788898776432123345567899998898888999999999999999999863 33455666655433 445
Q ss_pred CChHHHhHHHHHHHHc
Q 003722 493 LNYDVRDRARFFKKLF 508 (800)
Q Consensus 493 ~n~DVRDRAr~y~~LL 508 (800)
..-|-|+-+..=.++.
T Consensus 597 ~~lDsr~~~~iENay~ 612 (1128)
T KOG2051|consen 597 SALDSRQATLIENAYY 612 (1128)
T ss_pred hhhchHHHHHHHHhHH
Confidence 5566666655433333
No 175
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=38.76 E-value=35 Score=32.15 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722 49 SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (800)
Q Consensus 49 ~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~ 81 (800)
..-+++|-+-|.|.++.|+..|+.+|.|.|++.
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 445666777789999999999999999999887
No 176
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.70 E-value=3.2e+02 Score=33.77 Aligned_cols=148 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHhcCC--CcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhh
Q 003722 245 VKPLLFILRSS--GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYI 322 (800)
Q Consensus 245 v~pLv~LL~s~--~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv 322 (800)
+.-|+.+|.|+ .++..+.=.---.+.......+..++-++|+..+-.. .++||+. +-+-+-+.++..|-+|+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~-----~~~il~~-~~~P~~K~~~~~l~~~~ 79 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQR-----ALEILVG-VQEPHDKHLFDKLNDYF 79 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHH-----HHHHHHh-cCCccHHHHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHHHHHHhhCCccHHHH-----HHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchH
Q 003722 323 RDPDRRFAADTVAAIGLCARKLPKMANTC-----VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE 397 (800)
Q Consensus 323 ~~~d~~f~~~aI~aIg~lA~k~p~~a~~~-----l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~ 397 (800)
. ....+..++.-+|.+..+.|.+...+ +..|+++|.. +.+..+|.-++.+|.-||=.-|....
T Consensus 80 ~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~----------D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 80 V--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQF----------DTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred c--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhh----------cccHHHHHHHHHHHHHHhccccchhh
Q ss_pred HHHHHHHHhhhcc
Q 003722 398 KVIIQLFRSLDSI 410 (800)
Q Consensus 398 ~~i~~L~~~ld~i 410 (800)
..+..|...+-.+
T Consensus 148 ~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 148 PHLPDLFNIFGRL 160 (668)
T ss_pred HHHHHHHHHHHHH
No 177
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=37.62 E-value=29 Score=42.25 Aligned_cols=12 Identities=8% Similarity=0.484 Sum_probs=5.9
Q ss_pred HHHHHHHHhcCC
Q 003722 51 IEEIVGILLNDR 62 (800)
Q Consensus 51 L~~~l~~LL~D~ 62 (800)
|-+.++..+.|+
T Consensus 180 LsD~~e~~I~~~ 191 (960)
T KOG1189|consen 180 LSDLMESAIEDK 191 (960)
T ss_pred HHHHHHHHhhcc
Confidence 445555555443
No 178
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=36.91 E-value=74 Score=33.06 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=46.1
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCC
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP 79 (800)
...+.+-+.|.+.++||+|+.+-.+.-+. .+.+.+..++..++.|+.-.|-=+.-=+|.|+.-
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k 179 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK---TDTDLLFEIILANLGSKEFFIRKAIGWALREYSK 179 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 46788889999999999999876552221 2345677778888888887776665567777753
No 179
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=36.76 E-value=1.3e+02 Score=36.33 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=74.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhh-cC-chh--hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC---CC--ccc
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHE-LR-QEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PN--NFT 83 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~-ld-pe~--~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc---P~--~~~ 83 (800)
|+..+-+.+.|++-.|-+++.-||..+-- .. +.+ -....++++..++.|.++.+..+++.++..+- .+ ...
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~ 499 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQ 499 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHH
Confidence 34444566699999999999999988643 32 322 34457788889999999999999999999873 22 245
Q ss_pred chhHHHHHHHHhCCCCChhh-HHHHHHHHHhhh
Q 003722 84 LIGRNYRNLCQILPDVEEWG-QILLIEILLRYV 115 (800)
Q Consensus 84 Lih~~yr~Lc~~L~d~dEWg-Qi~iL~lL~rY~ 115 (800)
++.+..-+++-.+-.=.+|+ |-..+++|+...
T Consensus 500 ~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 500 LLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 56666555555555556666 888999988775
No 180
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.74 E-value=6e+02 Score=31.53 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhhcCCCCH----HHHHHHHHHhhhcCChhHHH-HHH-HHHHHHHhhCCccHHHHHHHHHHHHHhhhccc
Q 003722 293 QSKALKLEILSSIVTESSI----SSVFKEFQDYIRDPDRRFAA-DTV-AAIGLCARKLPKMANTCVEGLLALIRQELLTS 366 (800)
Q Consensus 293 ~Ik~lKLeIL~~La~e~Nv----~~Il~EL~~Yv~~~d~~f~~-~aI-~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~ 366 (800)
.+.-...|++-.+.++=|. +.|+.+|..-.-. +++... +.| .-+-++..-.|...-+-+..+.+||..+
T Consensus 237 hls~~~aeli~~isde~n~~~l~edi~~~l~~l~fn-~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdse---- 311 (1128)
T COG5098 237 HLSGLIAELIPSISDELNRCALKEDIPVLLKNLSFN-LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSE---- 311 (1128)
T ss_pred HHHHHHHHHHHHhHHHhhhhhhhcccHHHHhhceee-cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhccc----
Confidence 3555666777777666664 3566666553321 112211 222 3344566667776666677777777543
Q ss_pred cccCCCCCCchhHhHHHHHH-HHHH---hCCcc---hHHHHHHHHHhhh-cc--ChhhHHHHHHhhhccccCCCCCCcch
Q 003722 367 DIESGNGEADVLIQSIISIK-SIIK---QDPSC---HEKVIIQLFRSLD-SI--KVPEARVMIIWMVGEYSSVGVKIPRM 436 (800)
Q Consensus 367 ~~~~~~~~~~vv~E~V~vi~-~Il~---~~P~~---~~~~i~~L~~~ld-~i--~~p~ArasiiWLlGEy~~~~~~ip~i 436 (800)
...+.-+++-++ +++. ++|+. +...+..|+..+. .+ ..|-.|..++-.+-.-++.-...|.-
T Consensus 312 --------s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~ 383 (1128)
T COG5098 312 --------SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR 383 (1128)
T ss_pred --------chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch
Confidence 223333443222 3332 33422 2223333333331 12 24777777676666555543333444
Q ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCC
Q 003722 437 LTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (800)
Q Consensus 437 ~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~ 472 (800)
-.++.|....+..+-+..||--.+.++.|++.+.|-
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 567788777888888999999999999999999883
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.73 E-value=66 Score=40.90 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=50.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~----~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+-.++...-.|+.|..|--.++|+.++++-.++. ....-.+.|..+|.|.-|.|-+||+.||-...
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 3344444444468999999999999999876642 33445677788999999999999999987764
No 182
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=36.63 E-value=43 Score=43.49 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=7.4
Q ss_pred hhhhhhhccC
Q 003722 686 KRALESWLDE 695 (800)
Q Consensus 686 ~~~~~~~ld~ 695 (800)
|=-|+.||.-
T Consensus 483 KWQLdnWLnK 492 (1191)
T PF05110_consen 483 KWQLDNWLNK 492 (1191)
T ss_pred cccccccccc
Confidence 6678888844
No 183
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.38 E-value=5.9e+02 Score=32.27 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHHHHhhCCccHHHHHH-----HHHH-HHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchH--
Q 003722 326 DRRFAADTVAAIGLCARKLPKMANTCVE-----GLLA-LIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE-- 397 (800)
Q Consensus 326 d~~f~~~aI~aIg~lA~k~p~~a~~~l~-----~LL~-LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~-- 397 (800)
+.++--.|+|||..+.+-+|.....+|+ .|+. |+..+ |++ +.-|++..+..|-|.+|...-
T Consensus 225 n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie-------yiD----vAEQ~LqALE~iSR~H~~AiL~A 293 (1051)
T KOG0168|consen 225 NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE-------YID----VAEQSLQALEKISRRHPKAILQA 293 (1051)
T ss_pred cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh-------hhH----HHHHHHHHHHHHHhhccHHHHhc
Confidence 4677888999999999999987665555 3433 43332 321 445567788888888886422
Q ss_pred HHHHHHHHhhhccChhhHHHHHHhhhccccC
Q 003722 398 KVIIQLFRSLDSIKVPEARVMIIWMVGEYSS 428 (800)
Q Consensus 398 ~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~ 428 (800)
..+.....+||-..-..=|.+ +-+..-.|.
T Consensus 294 G~l~a~LsylDFFSi~aQR~A-laiaaN~Ck 323 (1051)
T KOG0168|consen 294 GALSAVLSYLDFFSIHAQRVA-LAIAANCCK 323 (1051)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 223444445554333322333 444444443
No 184
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=36.10 E-value=5.8e+02 Score=27.45 Aligned_cols=148 Identities=19% Similarity=0.104 Sum_probs=85.3
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcCC--------H-HH---HHHHHHHH---HHHhcCC---CcchHHHHHHHHH
Q 003722 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--------K-ED---VKRIVKPL---LFILRSS---GASKYVVLCNIQV 268 (800)
Q Consensus 207 ~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p--------~-~~---l~~~v~pL---v~LL~s~---~ei~yvvL~~I~~ 268 (800)
..++..+..++....|-.+...++++|.++- . .. ++++...+ ....... .+.|+.+|+.+..
T Consensus 13 ~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~ 92 (278)
T PF08631_consen 13 EHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLAN 92 (278)
T ss_pred HHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHH
Confidence 5677788888878888888888888887642 1 11 23332222 2222222 3577888877765
Q ss_pred HHHh--CCccccc---ccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCC-h-hHHHHHHHHHHHHH
Q 003722 269 FAKA--LPHLFVP---HYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPD-R-RFAADTVAAIGLCA 341 (800)
Q Consensus 269 L~~~--~p~lF~~---~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d-~-~f~~~aI~aIg~lA 341 (800)
.... .++-+.. .++..---+.++..+..+||+++....+. ..+-++|..-+.+.+ . .-...++..|..++
T Consensus 93 ~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~---~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~ 169 (278)
T PF08631_consen 93 AYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE---EEYEEILMRMIRSVDHSESNFDSILHHIKQLA 169 (278)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh---hHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 5432 1222211 11111112355667999999999994444 444444444454444 2 23344568888888
Q ss_pred hhCCccHHHHHHHHHH
Q 003722 342 RKLPKMANTCVEGLLA 357 (800)
Q Consensus 342 ~k~p~~a~~~l~~LL~ 357 (800)
.+-+..+-.|+..++.
T Consensus 170 ~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 170 EKSPELAAFCLDYLLL 185 (278)
T ss_pred hhCcHHHHHHHHHHHH
Confidence 8888877777765554
No 185
>PF14797 SEEEED: Serine-rich region of AP3B1, clathrin-adaptor complex
Probab=35.83 E-value=66 Score=30.59 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q 003722 603 TGSSSNGTDDP 613 (800)
Q Consensus 603 ~~~~~~~~~~~ 613 (800)
||+.++|+.|+
T Consensus 6 FYsEsEEeeds 16 (130)
T PF14797_consen 6 FYSESEEEEDS 16 (130)
T ss_pred ccccccccccc
Confidence 78888766553
No 186
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.61 E-value=9.3e+02 Score=30.61 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=97.6
Q ss_pred CCchHHHHHHHHHHHhhcCCC------CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhh
Q 003722 289 SDSYQSKALKLEILSSIVTES------SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQE 362 (800)
Q Consensus 289 ~Dp~~Ik~lKLeIL~~La~e~------Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~ 362 (800)
+|-..||-..|..|..++-.. +-..|+.=+.+|+++.|.-+--.+|+.+..++..+|+. ++.-|.+.-..
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~---il~dL~e~Y~s- 813 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED---ILPDLSEEYLS- 813 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh---hHHHHHHHHHh-
Confidence 333579999999999988622 44567888899999988888889999999999999874 34444432111
Q ss_pred hccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHH-hhhccChhhH--HHHHHhhhccccCCCC-CCcchHH
Q 003722 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFR-SLDSIKVPEA--RVMIIWMVGEYSSVGV-KIPRMLT 438 (800)
Q Consensus 363 ~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~-~ld~i~~p~A--rasiiWLlGEy~~~~~-~ip~i~~ 438 (800)
....+.....-.|-|++. +++|..-+...+....|.. ++.-+.+|+- |++-.-.+|+-|.... .+..+..
T Consensus 814 ---~k~k~~~d~~lkVGEai~---k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 814 ---EKKKLQTDYRLKVGEAIL---KVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred ---cccCCCccceehHHHHHH---HHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 111111112225667543 4455444433322223333 3334456665 8888889999876422 1222344
Q ss_pred HHHHHHHhh-hccCcHHHHHHHHHHHHHHH
Q 003722 439 TVLKYLAWC-FKSEAVETKLQILNTTIKVL 467 (800)
Q Consensus 439 dvLr~l~~~-F~~E~~~VKlqILta~aKL~ 467 (800)
+++..+..- -.+-+..||.....+.+-+.
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 444433321 12334556666666665554
No 187
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=35.34 E-value=67 Score=32.28 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCc
Q 003722 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (800)
Q Consensus 10 ~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp 44 (800)
.+.++..+..++.|.+.||||+.+-++.-++..+|
T Consensus 139 ~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 139 FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 45677788899999999999999999999999998
No 188
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.23 E-value=1.7e+02 Score=37.62 Aligned_cols=125 Identities=23% Similarity=0.380 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCCcchHHHHHHHHHhh--hccC--hhhHHHHHHhhhccccCCCCCCcch-H-HHHHHHHHhhhccCcHH
Q 003722 381 SIISIKSIIKQDPSCHEKVIIQLFRSL--DSIK--VPEARVMIIWMVGEYSSVGVKIPRM-L-TTVLKYLAWCFKSEAVE 454 (800)
Q Consensus 381 ~V~vi~~Il~~~P~~~~~~i~~L~~~l--d~i~--~p~ArasiiWLlGEy~~~~~~ip~i-~-~dvLr~l~~~F~~E~~~ 454 (800)
.+...+..+|.+-+..+.++..+++.+ .... .|..|+..+=-+|.+... .|.+ . .-+||++=|...+-...
T Consensus 265 ~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~---yP~~Fl~dsYLKYiGWtLsDk~~~ 341 (1048)
T KOG2011|consen 265 SLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS---YPEIFLSDSYLKYIGWTLSDKNGT 341 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh---ccHHHhcchHHHHhcceeecCccH
Confidence 344444444444443344455554422 2222 478888766556665542 2221 1 23689998888899999
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHH----HHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 003722 455 TKLQILNTTIKVLLCAKGGDMWTIT----RLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (800)
Q Consensus 455 VKlqILta~aKL~~~~p~e~~~~l~----~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~ 510 (800)
||++.|.++-|||-+. +....+. ++=..++++|-.|.+..||.=+....-++..
T Consensus 342 VRl~~lkaL~~L~e~~--~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~ 399 (1048)
T KOG2011|consen 342 VRLRCLKALIKLYEKD--EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS 399 (1048)
T ss_pred HHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc
Confidence 9999999999999884 2222232 3334678888777888888877766655543
No 189
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=34.20 E-value=22 Score=42.79 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=40.1
Q ss_pred CcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (800)
Q Consensus 3 sIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~ 81 (800)
++..|.+++.+...+...- +.+++||..|+.|+-++-...|+.-.+.|..++.. ...++-|-.+|+.++++..|..
T Consensus 516 N~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 516 NLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN--TTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp HHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT---H
T ss_pred ccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCCCH
Confidence 4455555555553333222 45888888888888877666663333334433221 2456678888888888876764
No 190
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=34.02 E-value=2.5e+02 Score=30.58 Aligned_cols=121 Identities=13% Similarity=0.198 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCc----------ccccccccce-ecc--------CCchHHHHHH
Q 003722 239 EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH----------LFVPHYEDFF-VSS--------SDSYQSKALK 298 (800)
Q Consensus 239 ~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~----------lF~~~l~~Ff-i~~--------~Dp~~Ik~lK 298 (800)
+.+..++.+++.++.. .+++|.-++..+..|+...|. ++.-+...++ |++ ++...+-...
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 3467788899999975 789999999999988875542 2222222222 222 3445676777
Q ss_pred HHHHHhhcC----------CCCHHHHHHH-H-HHhhhcCC---hhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHH
Q 003722 299 LEILSSIVT----------ESSISSVFKE-F-QDYIRDPD---RRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359 (800)
Q Consensus 299 LeIL~~La~----------e~Nv~~Il~E-L-~~Yv~~~d---~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL 359 (800)
...|..|+. ..+...+++| + ..|....+ ..++....+.+..+...+--..-.+++-++.+|
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777722 2234566666 3 33433333 556666666666555554444444444444443
No 191
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=33.48 E-value=2e+02 Score=26.88 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=63.0
Q ss_pred cchHHHHHHHHhhcC-CCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHH-HHHHHHHHHhCCCc--cc
Q 003722 8 VISPLVLVAVGKCAR-DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVV-GAAAAAFASICPNN--FT 83 (800)
Q Consensus 8 ~I~~iv~~aIkk~l~-D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv-~aAl~Af~eIcP~~--~~ 83 (800)
.+++.+++.+-+++. ...+-.|=+|-|-+..+-..-| -..+.+..+++.++..-.+.-. ..|+.++.-+|... .+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~~ 80 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQENVD 80 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcccccc
Confidence 567889999999999 8889999998888888887766 5556677777777776655555 88899988888543 33
Q ss_pred ch-hHHHHHHH
Q 003722 84 LI-GRNYRNLC 93 (800)
Q Consensus 84 Li-h~~yr~Lc 93 (800)
.+ .+.+++|+
T Consensus 81 ~lp~~~~~~l~ 91 (121)
T PF12397_consen 81 SLPRKVFKALL 91 (121)
T ss_pred cCCHHHHHHHH
Confidence 33 34455554
No 192
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=32.74 E-value=69 Score=24.66 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHH
Q 003722 35 ALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAA 73 (800)
Q Consensus 35 AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~A 73 (800)
|+..+-..+|.- ..+.+...+..-|.|.+|.|--+|+-+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456666778843 556788888888999999999888754
No 193
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=32.71 E-value=2.2e+02 Score=34.60 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=23.6
Q ss_pred HHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccC
Q 003722 244 IVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSS 289 (800)
Q Consensus 244 ~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~ 289 (800)
++.||+.+|.. +.-|+-.+|..|.-|+..+. .++.+|++++
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs-----~~kskfl~~n 461 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-----NLKSKFLRNN 461 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-----cHHHHHHHcC
Confidence 45677777643 23466677777776666554 3355554443
No 194
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.36 E-value=2.7e+02 Score=27.14 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=48.9
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhcC-CCcchHHHHHHHHHHHHhCCccccccc
Q 003722 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRS-SGASKYVVLCNIQVFAKALPHLFVPHY 281 (800)
Q Consensus 208 lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~-LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l 281 (800)
++-+++.+.+...|-+.+++.+-.+=. +...-+.+++.|.. |..+ ++++++.+|..+-.++..+...|..++
T Consensus 5 ~IekATse~l~~~dw~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 5 LIEKATDGSLQSEDWGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HHHHHcCcCCCCcCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 455667777788888888887766532 22223455666654 4333 577888899999999999987777543
No 195
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=32.29 E-value=2.6e+02 Score=27.82 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=28.2
Q ss_pred cccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCc
Q 003722 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (800)
Q Consensus 6 v~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp 44 (800)
-|++.++++..+|.. .++-+|+.|.-++.-|=.+||
T Consensus 8 yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 8 YPELLDILLNILKTE---QSQSIRREALRVLGILGALDP 43 (160)
T ss_pred hHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhccccCc
Confidence 366777777777766 558899999888888888888
No 196
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.13 E-value=40 Score=41.19 Aligned_cols=56 Identities=27% Similarity=0.234 Sum_probs=35.6
Q ss_pred cCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722 21 ARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 21 l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~ 80 (800)
++|.+--|||+|++||.=+.-.|| + ++..++..|-..-+|-|-.+|.+|+-=.|-.
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp-~---~~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDP-E---QLPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred ccccchHHHHHHHHHheeeEecCh-h---hchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 457888888888888875544566 3 3334443233456777777777777666643
No 197
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=32.08 E-value=85 Score=35.48 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722 289 SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPD-RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (800)
Q Consensus 289 ~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d-~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~ 360 (800)
.++......+++++-.-...+.+++|+++|++|-.+.+ .+++.++++.|.. ..| .-|.+-+++++
T Consensus 256 ~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k---~SP----tSLkvT~r~i~ 321 (401)
T KOG1684|consen 256 KDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKK---MSP----TSLKVTLRQIR 321 (401)
T ss_pred CCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---cCC----chHHHHHHHHH
Confidence 34445666799999999999999999999999875333 3688888877763 333 34555556555
No 198
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=31.54 E-value=40 Score=42.17 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=5.4
Q ss_pred hHHHHHhhh
Q 003722 530 PLVLVECIF 538 (800)
Q Consensus 530 ~~~la~~lf 538 (800)
...|.++|+
T Consensus 587 ~~vlveiLL 595 (784)
T PF04931_consen 587 SEVLVEILL 595 (784)
T ss_pred HHHHHHHHH
Confidence 346777664
No 199
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.52 E-value=1.6e+03 Score=31.22 Aligned_cols=73 Identities=21% Similarity=0.125 Sum_probs=48.5
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc----CchhhHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHh-CCCc
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL----RQEEITSAIEEIVGILLNDRSP-GVVGAAAAAFASI-CPNN 81 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l----dpe~~~~~L~~~l~~LL~D~dp-~Vv~aAl~Af~eI-cP~~ 81 (800)
+..++-..++|.+.-..|+-|---.+|+.-+|+. .+..+...=..++..|-.|+.+ .|...++.|+.-+ |+.+
T Consensus 913 ~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~ 991 (2067)
T KOG1822|consen 913 VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSG 991 (2067)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCC
Confidence 3445556677777778888888788888888875 2312222223356666678766 8888999998766 4443
No 200
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.79 E-value=39 Score=41.98 Aligned_cols=33 Identities=9% Similarity=0.285 Sum_probs=29.0
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 003722 287 SSSDSYQSKALKLEILSSIVTESSISSVFKEFQ 319 (800)
Q Consensus 287 ~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~ 319 (800)
-..++..||.++-..|+-|+....|.+|+..|-
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 357788999999999999999999999998773
No 201
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=30.65 E-value=94 Score=28.91 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhCCccHHHHH--HHHHHHHHhhhccccccCCCCCCchhHh-HHHHHHHHHHhCCcchH
Q 003722 329 FAADTVAAIGLCARKLPKMANTCV--EGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSCHE 397 (800)
Q Consensus 329 f~~~aI~aIg~lA~k~p~~a~~~l--~~LL~LL~~~~~~~~~~~~~~~~~vv~E-~V~vi~~Il~~~P~~~~ 397 (800)
|++..|+.||.++-+.+.+-+.+. .++--+|+... ++....++.| ++..||+|+..+|+.++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~-------iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCN-------IDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcC-------CCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 577889999999988887766554 34444554421 2233447777 77889999999987644
No 202
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.81 E-value=1.3e+03 Score=29.41 Aligned_cols=105 Identities=20% Similarity=0.117 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCC-CccHHHHHHHHHHHhCCCccc------
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPNNFT------ 83 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~-dp~Vv~aAl~Af~eIcP~~~~------ 83 (800)
+.+..++++.+ ++.|-|||+|=-|+-..=. +..--+.+|.-+-++. ++..-++|..+|..-|..+|.
T Consensus 5 e~l~~~l~qTl-~pdps~rk~aEr~L~~~e~-----q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 5 ETLANYLLQTL-SPDPSVRKPAERALRSLEG-----QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHHHHHhcC-CCCCccCchHHHHHHHhcc-----CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 33444555544 3557799999887764321 2122233444333454 778888888899888754442
Q ss_pred -chhHHHH----H-HHHhCCCCChhhHHHHHHHHHhhhhhcccccc
Q 003722 84 -LIGRNYR----N-LCQILPDVEEWGQILLIEILLRYVVASHGLVK 123 (800)
Q Consensus 84 -Lih~~yr----~-Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~ 123 (800)
.++..-| + ++..+-....=-|+.+=+.|.--+ ++.|++
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig--~~DFP~ 122 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIG--KRDFPD 122 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--ccccch
Confidence 2222222 2 223333344445666666665544 344443
No 203
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=28.49 E-value=6.6e+02 Score=26.51 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh----CCccHHHHHHHHHHH
Q 003722 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARK----LPKMANTCVEGLLAL 358 (800)
Q Consensus 312 ~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k----~p~~a~~~l~~LL~L 358 (800)
+.++.||+.|+++.+..+....++.+.+||.. +|..-+.+++.+-.+
T Consensus 2 q~~l~~L~~fi~~~~~~~~~~~~~~lvk~al~lL~~lPaaR~AVley~~~v 52 (213)
T PF14837_consen 2 QNLLDELKSFIRGVRPCYSNKSVEDLVKCALSLLRSLPAARDAVLEYFGLV 52 (213)
T ss_pred chHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35789999999998876666666677676654 577666666654443
No 204
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.86 E-value=3e+02 Score=30.18 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhcC-CCCHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHH
Q 003722 293 QSKALKLEILSSIVT-ESSISSVFKEFQD-YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357 (800)
Q Consensus 293 ~Ik~lKLeIL~~La~-e~Nv~~Il~EL~~-Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~ 357 (800)
.||+.|-++|-.+-. ..-+..++.|+-. |.........+.-+.++|+ .||......-+++|+.
T Consensus 21 ~ir~rk~qL~deIq~Lk~Ei~ev~~eid~~~~~e~skt~q~~k~~~~GR--KKFNmDP~Kgiq~l~e 85 (395)
T KOG0930|consen 21 NIRRRKQELLDEIQRLKDEIAEVMEEIDNLESTEESKTKQRNKQVAMGR--KKFNMDPKKGIQFLIE 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHhHHHhhch--hhcCCChHHHhHHHHH
Confidence 588888877765421 2224455555543 2222233444455566665 3555555556666654
No 205
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=27.81 E-value=1.8e+02 Score=35.05 Aligned_cols=117 Identities=14% Similarity=0.203 Sum_probs=70.5
Q ss_pred HHHhCCcchHHHHHHHHHhh--hccChhhHHHHHHhhhccc--cCCCCCCcchHH--HHHHHHHhhhccCcHHHHHHHHH
Q 003722 388 IIKQDPSCHEKVIIQLFRSL--DSIKVPEARVMIIWMVGEY--SSVGVKIPRMLT--TVLKYLAWCFKSEAVETKLQILN 461 (800)
Q Consensus 388 Il~~~P~~~~~~i~~L~~~l--d~i~~p~ArasiiWLlGEy--~~~~~~ip~i~~--dvLr~l~~~F~~E~~~VKlqILt 461 (800)
|.+.+|......+..+|..+ ..+.+-++...+.-+...| +. .+|.+.- -.+|++.+...+-+..||++.+.
T Consensus 260 l~~ln~sl~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~---lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~K 336 (740)
T COG5537 260 LYDLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIG---LVPDYFRKILGLRYNGWSLSDNHEGVRLLVSK 336 (740)
T ss_pred HHhhcchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHh---cchHHHHhhhcccccccccccchHHHHHHHHH
Confidence 34456666556666666532 3333333333333332222 22 2232211 13566666777888899999999
Q ss_pred HHHHHHhhcCCCCh--HHHHHHHHHHHHHHccCCChHHHhHH---HHHHHHc
Q 003722 462 TTIKVLLCAKGGDM--WTITRLFSYLLELAECDLNYDVRDRA---RFFKKLF 508 (800)
Q Consensus 462 a~aKL~~~~p~e~~--~~l~~L~q~vl~la~~D~n~DVRDRA---r~y~~LL 508 (800)
.+-+|+.+.|..+. +-+.++-..+++.+++|.|. ||--+ .-|.+.+
T Consensus 337 il~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 337 ILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 99999999987651 23456667899999999988 87643 3444444
No 206
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.77 E-value=1.5e+02 Score=32.89 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=52.5
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhC
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL---NDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL---~D~dp~Vv~aAl~Af~eIc 78 (800)
++.-++.+|-|.++.+.--|=|+|++++.-+|....+.....+..++..|| .+.+..|.-.|-.||..+.
T Consensus 126 ~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV 198 (334)
T KOG2933|consen 126 MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMV 198 (334)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 344577788899999999999999999999998755343336666666666 3566778888888877664
No 207
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.51 E-value=8.7e+02 Score=26.83 Aligned_cols=35 Identities=20% Similarity=0.037 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhh
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE 41 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ 41 (800)
.++-+-++.+++|+++|+.|-|||.-..++..++.
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999887
No 208
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=27.43 E-value=8e+02 Score=29.56 Aligned_cols=55 Identities=7% Similarity=0.149 Sum_probs=25.4
Q ss_pred CcchHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 003722 433 IPRMLTTVLKYLAWCFK--SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLE 487 (800)
Q Consensus 433 ip~i~~dvLr~l~~~F~--~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~ 487 (800)
+|....-+...+.++|. ..+..+....+..+.++--..|.-....+..+++.+++
T Consensus 156 vP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~ 212 (563)
T PF05327_consen 156 VPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILSLIIERLIK 212 (563)
T ss_dssp -GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 45544555556666665 33444445555555555555554333334444444433
No 209
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=27.24 E-value=83 Score=32.03 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=31.0
Q ss_pred chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCc
Q 003722 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (800)
Q Consensus 9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp 44 (800)
-.+.++..+...+.|...||||+.+-++.-++..+|
T Consensus 152 ~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 152 DFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 346778889999999999999999999999999999
No 210
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.76 E-value=1.3e+03 Score=29.40 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=110.8
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHh
Q 003722 313 SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (800)
Q Consensus 313 ~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p-~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~ 391 (800)
.|...|..-+.+.+-.-+.+++..+...-..-. ....+|...+..++....+ +.+..++.-+...|..|-..
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~k-------DaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLK-------DANINVVMLAAQILELIAKK 325 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhcc-------CcchhHHHHHHHHHHHHHHh
Confidence 345567777777787888888887776554433 3445666666666654322 22333555555555555444
Q ss_pred CCcchHHHHHHH-HHhhhccCh--hhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHh
Q 003722 392 DPSCHEKVIIQL-FRSLDSIKV--PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 468 (800)
Q Consensus 392 ~P~~~~~~i~~L-~~~ld~i~~--p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~ 468 (800)
.+......+... -..|+...+ +.+|.+++=++-.|++. +-+.++.+.+......-.+..|.+++.+..+.+-
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-----~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-----TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 444333332222 233444333 55666655555555542 1256777777777777788999999999888877
Q ss_pred hcCC--CChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 003722 469 CAKG--GDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (800)
Q Consensus 469 ~~p~--e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~ 510 (800)
.... .....+..+.-+++.. .+|.+.|||.=|..--..+..
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~-~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKH-INDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhh-ccCCcHHHHHHHHHHHHHHHH
Confidence 6642 1123466666666554 479999999998876555543
No 211
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=26.67 E-value=88 Score=33.69 Aligned_cols=14 Identities=7% Similarity=-0.133 Sum_probs=8.4
Q ss_pred CCchhHHhhccCCC
Q 003722 557 PGSLSQIVLHAAPG 570 (800)
Q Consensus 557 lGSLS~~~~~~~~g 570 (800)
+-+=+|-+|+...+
T Consensus 227 mStR~hkyGRQ~~~ 240 (314)
T PF06524_consen 227 MSTRSHKYGRQGQA 240 (314)
T ss_pred eeeecchhccccCC
Confidence 45556666666655
No 212
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=26.44 E-value=9.8e+02 Score=27.10 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=74.2
Q ss_pred ChhHHHHHHhhhhhccCCChHHHHHHHHHHHh-cCCH-H-HHH-HHHHHHHHHhcC--CCc-chHHHHHHHHHHHHhCC-
Q 003722 203 NDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI-MSPK-E-DVK-RIVKPLLFILRS--SGA-SKYVVLCNIQVFAKALP- 274 (800)
Q Consensus 203 d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~-l~p~-~-~l~-~~v~pLv~LL~s--~~e-i~yvvL~~I~~L~~~~p- 274 (800)
++|++..++++..+++...+-=+.+.+..++. +++. . -.. ...+.|-.|.+. .+. .||-++.++..++..+.
T Consensus 60 ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~ 139 (378)
T KOG2753|consen 60 EKDLECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKL 139 (378)
T ss_pred cchHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcce
Confidence 45788888888888887776444444444331 2221 0 001 122233333332 233 99999999999998775
Q ss_pred -ccccccc---ccceeccCCchHHHHHHHHHHHhhcCCCC----HHHHHHHHHHhhhcCChhH-HHHHHHHHHHHHhhCC
Q 003722 275 -HLFVPHY---EDFFVSSSDSYQSKALKLEILSSIVTESS----ISSVFKEFQDYIRDPDRRF-AADTVAAIGLCARKLP 345 (800)
Q Consensus 275 -~lF~~~l---~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~N----v~~Il~EL~~Yv~~~d~~f-~~~aI~aIg~lA~k~p 345 (800)
....+.+ ..||--.+=+..=++.=+..+..-.-+.+ ...++.||+.-.+..|..- +.+|.++|- -|.+-|
T Consensus 140 ~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~-~av~dP 218 (378)
T KOG2753|consen 140 IEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCVV-EAVKDP 218 (378)
T ss_pred eeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHH-HHHcCC
Confidence 2233333 34443233333233333333443333333 4567777765444445333 334555554 355666
Q ss_pred cc
Q 003722 346 KM 347 (800)
Q Consensus 346 ~~ 347 (800)
..
T Consensus 219 ~~ 220 (378)
T KOG2753|consen 219 KI 220 (378)
T ss_pred ce
Confidence 64
No 213
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=26.04 E-value=1.1e+03 Score=27.52 Aligned_cols=373 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcCCCCch-hhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccc----
Q 003722 10 SPLVLVAVGKCARDPSVF-VRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL---- 84 (800)
Q Consensus 10 ~~iv~~aIkk~l~D~sPY-VRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~L---- 84 (800)
++-+..+.+..+....|- +|++|..=+..|-+...+.....=..+...+-.-+.+..+-.-+.||..+.-+.-++
T Consensus 26 i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~ 105 (464)
T PF11864_consen 26 IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDFFE 105 (464)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchhcc
Q ss_pred --hhHHHHHHHHhCC------------------------CCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCC
Q 003722 85 --IGRNYRNLCQILP------------------------DVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHS 138 (800)
Q Consensus 85 --ih~~yr~Lc~~L~------------------------d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~ 138 (800)
+.+...+.+..+- +.++=.-.-+++++....+-+...+++
T Consensus 106 ~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e-------------- 171 (464)
T PF11864_consen 106 YEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDE-------------- 171 (464)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCH--------------
Q ss_pred cccccccccccccCCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhh-c
Q 003722 139 EKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPL-L 217 (800)
Q Consensus 139 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pL-L 217 (800)
.++..+++.+.-+ .
T Consensus 172 -----------------------------------------------------------------~~i~~lv~~i~~iC~ 186 (464)
T PF11864_consen 172 -----------------------------------------------------------------DEISSLVDQICTICK 186 (464)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHh
Q ss_pred cCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCch
Q 003722 218 WSHNSAVVLAAAGVHWIMS-----PKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSY 292 (800)
Q Consensus 218 ~S~NsAVVlaaa~~~~~l~-----p~~~l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~ 292 (800)
++.++..+-+|.+++-.+- |.+.+..++..|++..+.. +..-.+.+.|.-|+..+-.-..=+.-.-+++..|+.
T Consensus 187 ~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~-~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV-SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc-ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcc
Q ss_pred HHH-----HHHHHHHHhhcCCC--------CHHH--HHHHHHHhhhcCChhHHHHHHHHHHHHH-hhC-----CccHHHH
Q 003722 293 QSK-----ALKLEILSSIVTES--------SISS--VFKEFQDYIRDPDRRFAADTVAAIGLCA-RKL-----PKMANTC 351 (800)
Q Consensus 293 ~Ik-----~lKLeIL~~La~e~--------Nv~~--Il~EL~~Yv~~~d~~f~~~aI~aIg~lA-~k~-----p~~a~~~ 351 (800)
+.+ +=++.+|..+.-.. ++.. ++.-|..=++..+.-+..+.+..+-++- .++ ....+..
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~ 345 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDII 345 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHH
Q ss_pred HHHHHHHHHh-hhccccccCC---CCCCchhHhHHHHHHHHHHhCCcc--hHHHHHHHHHhhhccChhhHHHHHHhhhcc
Q 003722 352 VEGLLALIRQ-ELLTSDIESG---NGEADVLIQSIISIKSIIKQDPSC--HEKVIIQLFRSLDSIKVPEARVMIIWMVGE 425 (800)
Q Consensus 352 l~~LL~LL~~-~~~~~~~~~~---~~~~~vv~E~V~vi~~Il~~~P~~--~~~~i~~L~~~ld~i~~p~ArasiiWLlGE 425 (800)
++.+..++.. ..+.....+. ......+.+.+..|..+..+..-. .++.+..+.+....+.+..|...+ .-+
T Consensus 346 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl---~~~ 422 (464)
T PF11864_consen 346 LDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVL---FYE 422 (464)
T ss_pred HHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHH---HHH
Q ss_pred ccCCCCCCcchHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHH
Q 003722 426 YSSVGVKIPRMLTTVLKYLAWCFK--SEAVETKLQILNTTIKV 466 (800)
Q Consensus 426 y~~~~~~ip~i~~dvLr~l~~~F~--~E~~~VKlqILta~aKL 466 (800)
+....+.-|.|. +-++.++++|. ..+..||+.+|..+..+
T Consensus 423 ~~~~~Ps~~~W~-~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 423 ERSCSPSNPDWL-DNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred hcccCCCChHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHhhC
No 214
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=24.95 E-value=63 Score=22.27 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHh
Q 003722 28 VRKCAANALPKLH 40 (800)
Q Consensus 28 VRK~AA~AI~Kly 40 (800)
||..||.++.++-
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 8999999998763
No 215
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=24.18 E-value=2.9e+02 Score=29.21 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-cCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHhC
Q 003722 28 VRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQIL 96 (800)
Q Consensus 28 VRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL-~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~L 96 (800)
+.-..|.++.-+...+| +.-.++...|..+| .+.++.+.+.|+-++..+|+..+-=+.+..+-+-+.|
T Consensus 100 ~~i~~a~s~~~ic~~~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 100 CLISIAASIRDICCSRP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL 168 (234)
T ss_pred HHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 33344555555666788 46677888888899 7899999999999999999765322334444444444
No 216
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.13 E-value=76 Score=39.65 Aligned_cols=8 Identities=13% Similarity=-0.301 Sum_probs=2.9
Q ss_pred chHHHHHH
Q 003722 258 SKYVVLCN 265 (800)
Q Consensus 258 i~yvvL~~ 265 (800)
++..+|..
T Consensus 678 i~~~AL~v 685 (1516)
T KOG1832|consen 678 IIQPALNV 685 (1516)
T ss_pred HHHHHHhh
Confidence 33333333
No 217
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=24.10 E-value=4.7e+02 Score=27.60 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccC-CchHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 003722 242 KRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSS-DSYQSKALKLEILSSIVTESSISSVFKEFQD 320 (800)
Q Consensus 242 ~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~-Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~ 320 (800)
+..+++-+.||++=|-.|..||.++..+ |...++.++-.-. +.. --..-.+..+.+.++.|+..
T Consensus 25 ~~lvk~al~lL~~lPaaR~AVley~~~v-------f~eaV~~~~~~~E~~~~--------~~~~~~~~~~~~~ai~ei~~ 89 (213)
T PF14837_consen 25 EDLVKCALSLLRSLPAARDAVLEYFGLV-------FDEAVHLYLSPKENDAQ--------NNKQQQDEADLDEAIQEIHD 89 (213)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHH-------HHHHHHHHHHHHhhhhc--------ccccCCCCccHHHHHHHHHH
Confidence 4666788899998899999999988654 3444433321111 110 11122445677778888776
Q ss_pred hhh
Q 003722 321 YIR 323 (800)
Q Consensus 321 Yv~ 323 (800)
++.
T Consensus 90 ~L~ 92 (213)
T PF14837_consen 90 VLS 92 (213)
T ss_pred HHH
Confidence 654
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.64 E-value=1.6e+03 Score=29.45 Aligned_cols=197 Identities=13% Similarity=0.166 Sum_probs=99.5
Q ss_pred HHhcCCHH---HHHHHHHHH-HHHhcCC-CcchHHHHHHHHHHHHhCC----cccccccccceeccCCchHHHHHHHHHH
Q 003722 232 HWIMSPKE---DVKRIVKPL-LFILRSS-GASKYVVLCNIQVFAKALP----HLFVPHYEDFFVSSSDSYQSKALKLEIL 302 (800)
Q Consensus 232 ~~~l~p~~---~l~~~v~pL-v~LL~s~-~ei~yvvL~~I~~L~~~~p----~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL 302 (800)
|+-|+|=. .+.-=+-|. +.||.++ +|.|-+..-.-++|....| ++|...-..+|+..-+|.
T Consensus 497 FLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~---------- 566 (1387)
T KOG1517|consen 497 FLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS---------- 566 (1387)
T ss_pred HhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc----------
Confidence 55566522 122223354 5888764 7888776666677777777 477776555666655551
Q ss_pred HhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHH-----HHHHHHHhhhccccccCCCCCCch
Q 003722 303 SSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVE-----GLLALIRQELLTSDIESGNGEADV 377 (800)
Q Consensus 303 ~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~-----~LL~LL~~~~~~~~~~~~~~~~~v 377 (800)
.| .+++-+..+.--++.+...|+.--..|++ +.+..|.. +....
T Consensus 567 ------~~--------------~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd-----------~~~pL 615 (1387)
T KOG1517|consen 567 ------QA--------------IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND-----------DPEPL 615 (1387)
T ss_pred ------CC--------------CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC-----------CccHH
Confidence 11 11333333444444444444443333332 33333321 01234
Q ss_pred hHh-HHHHHHHHHHhCCcc-----hHHHHHHHHHhhhccChhhHHHHHHhhhccccCCC-----CC---C---------c
Q 003722 378 LIQ-SIISIKSIIKQDPSC-----HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVG-----VK---I---------P 434 (800)
Q Consensus 378 v~E-~V~vi~~Il~~~P~~-----~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~-----~~---i---------p 434 (800)
+.| +++.|-.|-+.|++. ...+-.+|...|.+ ..|+.||+.++-+|-|-..+ +. + .
T Consensus 616 LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~ 694 (1387)
T KOG1517|consen 616 LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDER 694 (1387)
T ss_pred HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhh
Confidence 444 333455666666653 12233344443332 45999999999999884421 00 0 0
Q ss_pred chHHHHHH----HHHhhhccCcHHHHHHHHHHHHHHHhhc
Q 003722 435 RMLTTVLK----YLAWCFKSEAVETKLQILNTTIKVLLCA 470 (800)
Q Consensus 435 ~i~~dvLr----~l~~~F~~E~~~VKlqILta~aKL~~~~ 470 (800)
..+++... -++....+-++.||.++..++..+.+..
T Consensus 695 ~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 695 TSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 11333333 3344455566677777666666655443
No 219
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=23.49 E-value=8.4e+02 Score=25.25 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 003722 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFA 270 (800)
Q Consensus 239 ~~l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~ 270 (800)
+.++.+++-|..+|.+.+++|-.+.+.+..|+
T Consensus 167 ~~F~~~a~~L~~~L~~~~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 167 ESFPSFAKLLGNALYDQPDLRPIICQALRRLV 198 (198)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 45777888888999999999999998887763
No 220
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=23.28 E-value=3e+02 Score=26.46 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=44.0
Q ss_pred HHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCCcchHHHHHHHHHHHHhCCccccccc
Q 003722 210 LQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (800)
Q Consensus 210 L~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv-~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l 281 (800)
-+++.+.+...+-+.+++.+-.+=. . +..-+.+++.|. +|-+.+|++++.+|..+-.++..+...|...+
T Consensus 6 ~kATs~~l~~~dw~~~l~icD~i~~-~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 6 DKATSPSLLEEDWELILEICDLINS-T-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred HHHcCcCCCCcCHHHHHHHHHHHhC-C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3445555556666666665544311 1 122344555565 34456789999999999999998887776554
No 221
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.27 E-value=1.5e+02 Score=22.08 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.9
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHH
Q 003722 315 FKEFQDYIRDPDRRFAADTVAAIGLCA 341 (800)
Q Consensus 315 l~EL~~Yv~~~d~~f~~~aI~aIg~lA 341 (800)
+.-|...+.+.+.+++..++.+|+.++
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456677778899999999999999886
No 222
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=22.52 E-value=2.4e+02 Score=30.43 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHHhhc-CCCCHH------------HHHHHHHHhhhcCCh-hHHHHHHHHHHHHHhhCCccH------HH
Q 003722 291 SYQSKALKLEILSSIV-TESSIS------------SVFKEFQDYIRDPDR-RFAADTVAAIGLCARKLPKMA------NT 350 (800)
Q Consensus 291 p~~Ik~lKLeIL~~La-~e~Nv~------------~Il~EL~~Yv~~~d~-~f~~~aI~aIg~lA~k~p~~a------~~ 350 (800)
+.+=+++.||+|.+|+ .+.|+. .++.-|..++..... -.+.-||.-+..+|.--..++ +.
T Consensus 137 ~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4568999999999996 688874 444555666665544 345556666666665544333 46
Q ss_pred HHHHHHHHHHh
Q 003722 351 CVEGLLALIRQ 361 (800)
Q Consensus 351 ~l~~LL~LL~~ 361 (800)
|+..|+.+|..
T Consensus 217 ~i~~Li~FiE~ 227 (257)
T PF12031_consen 217 CISHLIAFIED 227 (257)
T ss_pred hHHHHHHHHHH
Confidence 78899998874
No 223
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=22.26 E-value=7.3e+02 Score=26.77 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCH
Q 003722 244 IVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311 (800)
Q Consensus 244 ~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv 311 (800)
+.+=|.+.|+.+ ++.+ -+-+.+.. -++++.++--..+.+.+...|-...|++|..|+.+-.+
T Consensus 14 ~LkdL~r~lr~dd~~~~-~v~r~lg~-----~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~ 76 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR-DVRRQLGE-----WNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL 76 (266)
T ss_pred HHHHHHHHHHHhCcchH-HHHHHHHH-----hchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH
Confidence 445667777653 3333 22222221 24566565555556665666888899999999875443
No 224
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=21.50 E-value=6.7e+02 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=18.9
Q ss_pred HHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 003722 480 RLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (800)
Q Consensus 480 ~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~ 510 (800)
.++..+.+.++.-=|..||..|.-..++|..
T Consensus 340 ~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 340 IIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3343333333333478899999888888864
No 225
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=2.2e+03 Score=29.38 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=88.5
Q ss_pred CChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhCCccc
Q 003722 202 TNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PKEDVKRIVKPLLFI-LRSSGASKYVVLCNIQVFAKALPHLF 277 (800)
Q Consensus 202 ~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~---p~~~l~~~v~pLv~L-L~s~~ei~yvvL~~I~~L~~~~p~lF 277 (800)
+-|-...||+++.|-+..+|++|--+.+.+.-|+. .++...+.+.-++.. +......+-++...+..|+...+++|
T Consensus 1271 mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~L 1350 (1702)
T KOG0915|consen 1271 MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEML 1350 (1702)
T ss_pred cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHH
Confidence 44556789999999999999999999999877764 355666666666644 44332223444444444777777777
Q ss_pred cccccc-----ceeccCCchHHHHHHHHHHHhhcC--CCCHH----HHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhhCC
Q 003722 278 VPHYED-----FFVSSSDSYQSKALKLEILSSIVT--ESSIS----SVFKEFQDYIRDPD-RRFAADTVAAIGLCARKLP 345 (800)
Q Consensus 278 ~~~l~~-----Ffi~~~Dp~~Ik~lKLeIL~~La~--e~Nv~----~Il~EL~~Yv~~~d-~~f~~~aI~aIg~lA~k~p 345 (800)
..|... |+.+..+......+==++...++. ...+. .|+..+-.-+.+.+ -.++..++++|..+|....
T Consensus 1351 kn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1351 KNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence 776543 333333333344444445555443 22332 33333334444433 2566677888888888775
Q ss_pred ccH
Q 003722 346 KMA 348 (800)
Q Consensus 346 ~~a 348 (800)
..+
T Consensus 1431 ss~ 1433 (1702)
T KOG0915|consen 1431 SSA 1433 (1702)
T ss_pred ccC
Confidence 544
No 226
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=21.48 E-value=77 Score=39.67 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=8.8
Q ss_pred hhcCCCCchhhHHHHHHHHHHhh
Q 003722 19 KCARDPSVFVRKCAANALPKLHE 41 (800)
Q Consensus 19 k~l~D~sPYVRK~AA~AI~Kly~ 41 (800)
||+..+..--|=--++|+.-+-+
T Consensus 10 rGl~S~r~~aR~Gfs~~Lte~l~ 32 (784)
T PF04931_consen 10 RGLASSRESARLGFSLALTELLS 32 (784)
T ss_pred cccCCChHHHHHHHHHHHHHHHH
Confidence 33333333333333444444333
No 227
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.79 E-value=1.2e+03 Score=29.74 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHH---hcCCHHH-----HHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcc--cccc--c-ccce
Q 003722 221 NSAVVLAAAGVHW---IMSPKED-----VKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHL--FVPH--Y-EDFF 285 (800)
Q Consensus 221 NsAVVlaaa~~~~---~l~p~~~-----l~~~v~pLv~LL~s--~~ei~yvvL~~I~~L~~~~p~l--F~~~--l-~~Ff 285 (800)
.++--|++..=.+ .|+..+. ++.++..|+.||+- ..+|...+-+.|.-|+...|.- |.-+ . ..|.
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 4556666655433 2344332 57788889999874 5789999999999999888852 1111 1 1221
Q ss_pred -----eccCCchHHHHHHHHHHHhhcCCCCHHHHHH--HHHH---hhhcCChhHHHHHHHHHHHHHhhCCccHHHH----
Q 003722 286 -----VSSSDSYQSKALKLEILSSIVTESSISSVFK--EFQD---YIRDPDRRFAADTVAAIGLCARKLPKMANTC---- 351 (800)
Q Consensus 286 -----i~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~--EL~~---Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~---- 351 (800)
|-|-| +..-.|+-|-.|....+.. ||+ -|.. |+.=......+.|+...+.|+.+++...-..
T Consensus 261 ~kL~~IeyiD---vAEQ~LqALE~iSR~H~~A-iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYID---VAEQSLQALEKISRRHPKA-ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEA 336 (1051)
T ss_pred HhhhhhhhhH---HHHHHHHHHHHHHhhccHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 22333 4444444444444433321 111 1222 2211122466777777788898887544333
Q ss_pred HHHHHHHHHh
Q 003722 352 VEGLLALIRQ 361 (800)
Q Consensus 352 l~~LL~LL~~ 361 (800)
|-.|..||+.
T Consensus 337 lPlL~~lLs~ 346 (1051)
T KOG0168|consen 337 LPLLTPLLSY 346 (1051)
T ss_pred HHHHHHHHhh
Confidence 3355555553
No 228
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=1.6e+03 Score=27.37 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHH--HHHh-
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAA--FASI- 77 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~A--f~eI- 77 (800)
+++.|+.+=.|..+.-+..-+..++.-.|-+|++++.-.|.=. +.+++.++|.-+..+.|...-.+++++ +-.|
T Consensus 439 ~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt---~~eevl~lL~Pi~~std~pie~~~~asltLg~vF 515 (881)
T COG5110 439 LSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGT---QAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVF 515 (881)
T ss_pred ecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCC---cHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheE
Confidence 4788999999999999999999999999999999999888753 456777777776666555333334443 3333
Q ss_pred ---CCCcccchhHHHHHHHHh--CCCCChhhHHHHHHHHHhhh
Q 003722 78 ---CPNNFTLIGRNYRNLCQI--LPDVEEWGQILLIEILLRYV 115 (800)
Q Consensus 78 ---cP~~~~Lih~~yr~Lc~~--L~d~dEWgQi~iL~lL~rY~ 115 (800)
|-.. +-.-....++.. +..-+.|+.-..|.+-.-|.
T Consensus 516 vGtcngD--~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~ 556 (881)
T COG5110 516 VGTCNGD--LTSLILQTFVERGKIESETQWFRFLALGLASLFY 556 (881)
T ss_pred eeccCch--HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHc
Confidence 4332 222222233332 34567899988888755554
No 229
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.19 E-value=80 Score=37.68 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=42.5
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccc
Q 003722 15 VAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL 84 (800)
Q Consensus 15 ~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~L 84 (800)
.-|++.+.|..|..|-..+++++-.|-=-- ....+..+|.--.+|.+-.|-.+|++|+-=||=+..++
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTg--n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~ 586 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTG--NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL 586 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCC--cchhHhhhheeecccCchHHHHHHHHheeeeEecCcch
Confidence 457777788888888777777776665321 12223333333356777778888888777776444443
No 230
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=20.17 E-value=58 Score=36.02 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=14.2
Q ss_pred HhhccCCCCccCCC-CCCCCCc
Q 003722 563 IVLHAAPGYEPLPK-PCSSLCD 583 (800)
Q Consensus 563 ~~~~~~~gy~~Lp~-~~~~~~~ 583 (800)
+-.+.++||-.|.. |..+...
T Consensus 305 Vw~ktv~Grpkls~~w~~~L~~ 326 (407)
T KOG2130|consen 305 VWHKTVRGRPKLSRKWARLLAL 326 (407)
T ss_pred eeecccCCCcchhhHHHHHHhh
Confidence 33567899988887 5555444
No 231
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=20.15 E-value=1.4e+02 Score=21.48 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722 53 EIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 53 ~~l~~LL~D~dp~Vv~aAl~Af~eIc 78 (800)
+.|-.||...++.++..|+.++..++
T Consensus 15 ~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 15 PALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 33445666667777777777777664
Done!