Query 003722
Match_columns 800
No_of_seqs 229 out of 861
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 18:36:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003722.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1769-1773//hhsearch_pdb/003722hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 1.0 1 1 531.4 20.2 433 1-547 135-608 (621)
2 2vgl_B AP-2 complex subunit be 1.0 1 1 529.8 41.0 446 1-567 110-577 (591)
3 1w63_A Adapter-related protein 1.0 1 1 478.6 32.7 442 1-569 131-609 (618)
4 3tjz_B Coatomer subunit gamma; 1.0 1 1 225.8 8.2 220 1-308 128-354 (355)
5 2vgl_B AP-2 complex subunit be 1.0 1 1 108.3 24.0 389 14-511 51-456 (591)
6 1b3u_A Protein (protein phosph 1.0 1 1 106.3 22.3 284 14-346 12-314 (588)
7 1w63_A Adapter-related protein 1.0 1 1 101.9 22.0 106 7-115 102-207 (618)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 99.3 29.1 269 206-487 172-490 (852)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 97.9 32.7 69 10-78 172-243 (852)
10 1u6g_C TIP120 protein, CAND1; 1.0 1 1 90.5 35.1 105 11-115 47-162 (1230)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=531.44 Aligned_cols=433 Identities=17% Similarity=0.227 Sum_probs=360.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 987561020387999998513--8999005699999999974027024288--899999988128992079999999998
Q 003722 1 MAGIRLHVISPLVLVAVGKCA--RDPSVFVRKCAANALPKLHELRQEEITS--AIEEIVGILLNDRSPGVVGAAAAAFAS 76 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l--~D~sPYVRK~AA~AI~Kly~ldp~~~~~--~L~~il~~LL~D~~p~VvgaAi~Al~e 76 (800)
||+|+.|++++.++.+|++++ .|++|||||+||+|+.|+|+++| +..+ .+.+.+..||+|+||+|+++|+.++.+
T Consensus 135 L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 135 IANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-HHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 6655979999999999999981799977999999999999997491-005712399999998479980299999999999
Q ss_pred HCCCCC----CCHHHHHHHHHHHCC--CC-----------CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 597862----121699999997489--99-----------9214999999999633211366411222233220157875
Q 003722 77 ICPNNF----TLIGRNYRNLCQILP--DV-----------EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSE 139 (800)
Q Consensus 77 IcP~~~----~Lih~~yr~Lc~~L~--d~-----------dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~ 139 (800)
||+++. .++++.++.|++++. ++ +||+|+.+|++|.+|++... |.. .
T Consensus 214 i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d----~~~------~------ 277 (621)
T 2vgl_A 214 LAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED----PAV------R------ 277 (621)
T ss_dssp HHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS----HHH------H------
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCC----HHH------H------
T ss_conf 999696989988899999999998678998620011589996399999999987288888----899------9------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HH--
Q ss_conf 21000000011389999776412343210110025432113477755556665566446898874699999963--11--
Q 003722 140 KDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCT--SP-- 215 (800)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~--~p-- 215 (800)
. .+.+.+..+++.+ .|
T Consensus 278 -----------------------------~-------------------------------~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 278 -----------------------------G-------------------------------RLTECLETILNKAQEPPKS 297 (621)
T ss_dssp -----------------------------H-------------------------------HHHHHHHHHHHHHHSCCSC
T ss_pred -----------------------------H-------------------------------HHHHHHHHHHHHHCCCCCC
T ss_conf -----------------------------9-------------------------------9999999999861347643
Q ss_pred -HCCCCCH--HHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCEE-C
Q ss_conf -0048895--9999999999816997-889998999998732-788606899999999997699--630001131130-3
Q 003722 216 -LLWSHNS--AVVLAAAGVHWIMSPK-EDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP--HLFVPHYEDFFV-S 287 (800)
Q Consensus 216 -LLqS~Ns--AVVlaaa~l~~~l~p~-~~l~~~v~pLi~LL~-s~~eiqyvvL~~I~~l~~~~P--~lf~~~l~~Ffv-~ 287 (800)
.++|+|+ ||+++|+++++++.+. ..+..++.+|.+||. +++|+||++|+++..|+..+| ..|.+|...|+. +
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 45343423888999999999964884999999999999985489932599999999999843685799999999999996
Q ss_pred C-CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 5-895678999999998405988799999999983304882289999999999996297217999999999988321026
Q 003722 288 S-SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTS 366 (800)
Q Consensus 288 ~-~Dp~~Ik~lKLeIL~~L~~e~Nv~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~~a~~~L~~Ll~LL~~~~~~~ 366 (800)
. +++.+||++||++|+.|++++|+..|++||.+|+.+.|.+|+.++|++||.||.+|+..+.||+++|+++++..
T Consensus 378 ~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~---- 453 (621)
T 2vgl_A 378 KTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA---- 453 (621)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----
T ss_conf 5699875999999999998085359999999999998668888999999999999866896899999999999860----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH----HHHCCCCCCCCCCCCHH-HHHH
Q ss_conf 656789987224768999999987099644999999998631037034799777----54235567888772108-9999
Q 003722 367 DIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII----WMVGEYSSVGVKIPRML-TTVL 441 (800)
Q Consensus 367 ~~~~~~~~~~vv~E~I~vi~~Li~~~p~~~~~~i~~L~~~ld~i~~p~Akasii----WIlGEY~~~~~~ip~i~-~dvL 441 (800)
+..+..|++.+++++++++|+.++.++.+|++.+. +|.++++++ |++||||+.+...+++. .+++
T Consensus 454 -------~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~---~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l 523 (621)
T 2vgl_A 454 -------GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQ---APACHENLVKVGGYILGEFGNLIAGDPRSSPLIQF 523 (621)
T ss_dssp -------GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHT---SSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHH
T ss_conf -------42136999999999973876699999999999873---85334999999999964448774146777778999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99886310370999999999999997625798837999999999998712--9995798689999997058968988530
Q 003722 442 KYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC--DLNYDVRDRARFFKKLFSHNLCSQVPEE 519 (800)
Q Consensus 442 r~l~~~F~~E~~~vKlqILta~aKl~~~~p~e~~~~i~~l~qyvLela~~--D~d~DVRDRAr~y~~LL~~~~~~~~~~~ 519 (800)
+.++++|..|+..||+++||+++|++.+.|+ +...++++|+.+++ |.|+||||||++||+|+..+..
T Consensus 524 ~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~------ 592 (621)
T 2vgl_A 524 NLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAST------ 592 (621)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCS------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH------
T ss_conf 9999875348877999999999999987747-----89999999999705899897999999999999856999------
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 0121016870389898540269887788
Q 003722 520 TNALQENKDLPLVLVECIFRKQENLAAS 547 (800)
Q Consensus 520 ~~~~~~~~~~~~~la~~lf~~~~~~~~~ 547 (800)
+ +.+.++.++||++..
T Consensus 593 --------~----~~~~vl~~~P~~~~~ 608 (621)
T 2vgl_A 593 --------D----ILATVLEEMPPFPER 608 (621)
T ss_dssp --------T----TTTTTSSSCCCCCCC
T ss_pred --------H----HHHHHHHCCCCCCCC
T ss_conf --------9----998885138989976
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=529.80 Aligned_cols=446 Identities=28% Similarity=0.456 Sum_probs=390.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9875610203879999985138999005699999999974027024-288899999988128992079999999998597
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~-~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP 79 (800)
|++|+.+++.+.++.+|++++.|++|||||+||.|+.|+|+.+|+. ....+.+.+..+|+|++++|.++|+.++.++|+
T Consensus 110 L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 87589077899999999998179985899999999999985192414463589999999679984399999999999976
Q ss_pred CC-----CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86-----2121699999997489999214999999999633211366411222233220157875210000000113899
Q 003722 80 NN-----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI 154 (800)
Q Consensus 80 ~~-----~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (800)
+. +++.++++++||+.|.+++||+|+.++++|.+|++..
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~------------------------------------ 233 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD------------------------------------ 233 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS------------------------------------
T ss_pred HCCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC------------------------------------
T ss_conf 37875404426999999987488788257899999999867998------------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99776412343210110025432113477755556665566446898874699999963110048895999999999981
Q 003722 155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI 234 (800)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~ 234 (800)
+.+...+++.+.++|++.|++|+++|++++.+
T Consensus 234 ------------------------------------------------~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 234 ------------------------------------------------DREAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp ------------------------------------------------HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf ------------------------------------------------59999999999998758984999999999999
Q ss_pred CCC-----HHH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
Q ss_conf 699-----788----99989999987327886068999999999976996300011311303589567899999999840
Q 003722 235 MSP-----KED----VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSI 305 (800)
Q Consensus 235 l~p-----~~~----l~~~v~pLi~LL~s~~eiqyvvL~~I~~l~~~~P~lf~~~l~~Ffv~~~Dp~~Ik~lKLeIL~~L 305 (800)
+.+ ++. +.+++.+|++|+++++|+||++|+++..++..+|..|.+|++.|+|+.+||.+||+.||++|+.+
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l 345 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRL 345 (591)
T ss_dssp SCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
T ss_conf 74024788799999999999999999669920899999999999986969899988755003699399999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 59887999999999833048822899999999999962972179999999999883210266567899872247689999
Q 003722 306 VTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISI 385 (800)
Q Consensus 306 ~~e~Nv~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~~a~~~L~~Ll~LL~~~~~~~~~~~~~~~~~vv~E~I~vi 385 (800)
++++|+..|++||.+|+.+.|.+|+.+++++||.||.+++..+.||+++|+++++.. +.++..+++.++
T Consensus 346 ~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~-----------~~~v~~e~i~~l 414 (591)
T 2vgl_B 346 ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK-----------VNYVVQEAIVVI 414 (591)
T ss_dssp CCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHH
T ss_conf 786239999999999986579999999999999999857467999999999998355-----------168999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99987099644999999998631037034799777542355678887721089999998863103709999999999999
Q 003722 386 KSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIK 465 (800)
Q Consensus 386 ~~Li~~~p~~~~~~i~~L~~~ld~i~~p~AkasiiWIlGEY~~~~~~ip~i~~dvLr~l~~~F~~E~~~vKlqILta~aK 465 (800)
++|++++|+.++.++..|++.++.+.+|.++++++|++||||+.. +. ++++++.++++|..|+..||+++|++++|
T Consensus 415 ~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~---~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~K 490 (591)
T 2vgl_B 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI---DN-ADELLESFLEGFHDESTQVQLTLLTAIVK 490 (591)
T ss_dssp HHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC---TT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC---CC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999997920578999999988874237899999999997031213---67-89999999986645988899999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 976257988379999999999987129-9957986899999970589689885300121016870389898540269887
Q 003722 466 VLLCAKGGDMWTITRLFSYLLELAECD-LNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENL 544 (800)
Q Consensus 466 l~~~~p~e~~~~i~~l~qyvLela~~D-~d~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~~~ 544 (800)
++.+.|++. ..+++++|+.+++| .|+||||||++|++||..+. + ...+.++.+||++
T Consensus 491 l~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~---------------~---~~~~~v~~~~p~~ 548 (591)
T 2vgl_B 491 LFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP---------------V---TAKEVVLSEKPLI 548 (591)
T ss_dssp HHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCT---------------T---HHHHHHTSCCCCC
T ss_pred HHHCCCHHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH---------------H---HHHHHHCCCCCCC
T ss_conf 996196579----99999999986535899679999999999977498---------------9---9999874899999
Q ss_pred CCCCCC-CC-----CCCCCCCHHHHHHCC
Q ss_conf 788986-54-----345687256773202
Q 003722 545 AASEPI-ND-----RFYLPGSLSQIVLHA 567 (800)
Q Consensus 545 ~~~~~~-~~-----r~~~lGSLS~~~~~~ 567 (800)
...++. .. ....+||||++++++
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~tl~~~~~~~ 577 (591)
T 2vgl_B 549 SEETDLIEPTLLDELICHIGSLASVYHKP 577 (591)
T ss_dssp CSCSSCCCHHHHHHHHTTTTSSHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf 97843247789999998738515552578
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=478.62 Aligned_cols=442 Identities=14% Similarity=0.171 Sum_probs=358.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98756102038799999851389990056999999999740270242888999999881289920799999999985978
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~ 80 (800)
||+|+.+++++.++..|++++.|++|||||+|++|+.|+|+.+| +..+.+.+.+..+|+|+||+|+++|+.++.++|+.
T Consensus 131 L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88629899999999999999759987999999999999998795-87999999999982799773999999999999983
Q ss_pred CCCCHHHHHH----HHHHHCCC---------------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 6212169999----99974899---------------9921499999999963321136641122223322015787521
Q 003722 81 NFTLIGRNYR----NLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKD 141 (800)
Q Consensus 81 ~~~Lih~~yr----~Lc~~L~d---------------~dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~~~ 141 (800)
..++ +.+|+ .|+++|.+ .+||+|+.++++|.+|++.. |.. .
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-----~~~------~-------- 269 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-----DDS------S-------- 269 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-----HHH------H--------
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-----HHH------H--------
T ss_conf 9588-9999998999999999987279995432268898709999999998738999-----799------9--------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCC
Q ss_conf 000000011389999776412343210110025432113477755556665566446898874699999963110--048
Q 003722 142 VFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPL--LWS 219 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pL--LqS 219 (800)
+ .-...|.+.+.+. +++
T Consensus 270 ---------------------------~----------------------------------~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 270 ---------------------------E----------------------------------AMNDILAQVATNTETSKN 288 (618)
T ss_dssp ---------------------------H----------------------------------TTHHHHHHHHHTSCCSST
T ss_pred ---------------------------H----------------------------------HHHHHHHHHHHCCCCCCC
T ss_conf ---------------------------9----------------------------------999999999735645554
Q ss_pred CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCEECCCCCHHHHH
Q ss_conf 8959999999999816997-889998999998732-78860689999999999769963000113-11303589567899
Q 003722 220 HNSAVVLAAAGVHWIMSPK-EDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYE-DFFVSSSDSYQSKA 296 (800)
Q Consensus 220 ~NsAVVlaaa~l~~~l~p~-~~l~~~v~pLi~LL~-s~~eiqyvvL~~I~~l~~~~P~lf~~~l~-~Ffv~~~Dp~~Ik~ 296 (800)
.|.+|+++|+++++++.+. .....++.+|++++. +++|+||++|.++..++..+|.+|.+|.. .|+|+.+++.+||+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~ 368 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKR 368 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 47899999999999548877999999999999974799743799999999998608899999999999871599966999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999984059887999999999833048822899999999999962972179999999999883210266567899872
Q 003722 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (800)
Q Consensus 297 lKLeIL~~L~~e~Nv~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~~a~~~L~~Ll~LL~~~~~~~~~~~~~~~~~ 376 (800)
+||++|+.|++++|+..|++||..|+.+.|.+|+.+++++||+||.+++....||++.|+++++.. +..
T Consensus 369 ~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~-----------~~~ 437 (618)
T 1w63_A 369 RAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA-----------GSY 437 (618)
T ss_dssp HHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-----------GGG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCH
T ss_conf 999999997164119999999999987288999999999999999985750889999999999863-----------531
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHCCCCCCCC-----------CCCCHHHHHHHH
Q ss_conf 247689999999870996449999999986310-3-703479977754235567888-----------772108999999
Q 003722 377 VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS-I-KVPEARVMIIWMVGEYSSVGV-----------KIPRMLTTVLKY 443 (800)
Q Consensus 377 vv~E~I~vi~~Li~~~p~~~~~~i~~L~~~ld~-i-~~p~AkasiiWIlGEY~~~~~-----------~ip~i~~dvLr~ 443 (800)
+..+++.+++++++++|+.+..++.+|++.++. + .++.++ +++|++||||+.+. ..|..+.++++.
T Consensus 438 v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 516 (618)
T 1w63_A 438 VRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILES 516 (618)
T ss_dssp SCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 479999999999956856899999999999745233289999-9999982358775146544212457788999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 88631037099999999999999762579883799999999999871299957986899999970589689885300121
Q 003722 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNAL 523 (800)
Q Consensus 444 l~~~F~~E~~~vKlqILta~aKl~~~~p~e~~~~i~~l~qyvLela~~D~d~DVRDRAr~y~~LL~~~~~~~~~~~~~~~ 523 (800)
+++.| .++..||+++|++++|++.+.|+. . ..++.+|+.+..|.|+||||||++||+|+....
T Consensus 517 ~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-~----~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~----------- 579 (618)
T 1w63_A 517 VLISN-MSTSVTRGYALTAIMKLSTRFTCT-V----NRIKKVVSIYGSSIDVELQQRAVEYNALFKKYD----------- 579 (618)
T ss_dssp HHHST-TCCHHHHHHHHHHHHHHHTTCSSC-H----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTT-----------
T ss_pred HHHCC-CCCHHHHHHHHHHHHHHHHHCCCH-H----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH-----------
T ss_conf 97444-797999999999999999858446-9----999999998358999899999999999980749-----------
Q ss_pred HCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 0168703898985402698877889865434568725677320289
Q 003722 524 QENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAP 569 (800)
Q Consensus 524 ~~~~~~~~~la~~lf~~~~~~~~~~~~~~r~~~lGSLS~~~~~~~~ 569 (800)
.+++.++.++|+|... ..|..|++|+|.-.
T Consensus 580 --------~~~~~vl~~~P~~~~~--------~~~~~~~~~~~~~~ 609 (618)
T 1w63_A 580 --------HMRSALLERMPVMEKV--------TTNGPSEIVQTNGE 609 (618)
T ss_dssp --------THHHHHHSCCCCCCC-----------------------
T ss_pred --------HHHHHHHHCCCCCCCC--------CCCCCCCCCCCCCC
T ss_conf --------9998773238999856--------66886533577788
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=225.80 Aligned_cols=220 Identities=12% Similarity=0.062 Sum_probs=180.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98756102038799999851389990056999999999740270242888999999881289920799999999985978
Q 003722 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (800)
Q Consensus 1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~ 80 (800)
||+||.+++++.+...+++|+.|++|||||+|++|+.|+|..+| +....+.+.+..+++|++|+|+.+|+.+++++|..
T Consensus 128 L~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 128 LCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 86579789999999999998589989999999999999933689-99999999999996499810899999999999862
Q ss_pred CCCCHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6212169999999748999---9214999999999633211366411222233220157875210000000113899997
Q 003722 81 NFTLIGRNYRNLCQILPDV---EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (800)
Q Consensus 81 ~~~Lih~~yr~Lc~~L~d~---dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (800)
. ..++.+|...+.+. +||+|+.+|+++.+|++... |
T Consensus 207 d----~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~----~--------------------------------- 245 (355)
T 3tjz_B 207 D----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED----G--------------------------------- 245 (355)
T ss_dssp C----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred C----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC----H---------------------------------
T ss_conf 6----6889999999766787582899999999998664463----6---------------------------------
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 76412343210110025432113477755556665566446898874699999963110048895999999999981699
Q 003722 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237 (800)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~p 237 (800)
.....+++.+.+.|+|.|+||||+|+++++.+..
T Consensus 246 ----------------------------------------------~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 246 ----------------------------------------------SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ---------------------------------------------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf ----------------------------------------------5689999999999828981999999999993658
Q ss_pred --HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCC-HHHHHHHHHHHHHHCCC
Q ss_conf --7889998999998732-78860689999999999769963000113113035895-67899999999840598
Q 003722 238 --KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTE 308 (800)
Q Consensus 238 --~~~l~~~v~pLi~LL~-s~~eiqyvvL~~I~~l~~~~P~lf~~~l~~Ffv~~~Dp-~~Ik~lKLeIL~~L~~e 308 (800)
...+..++.+|..+|. +++|+||++|++|..++..+|.+++.+-....-+.+|+ ..|+.+++..|.+-.+|
T Consensus 280 ~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 280 CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 889999999999999976999148999999999999879499999999999870698676999999986313689
No 5
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=108.32 Aligned_cols=389 Identities=11% Similarity=0.044 Sum_probs=232.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99998513899900569999999997402702428889999998812899207999999999859786212169999999
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC 93 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~~~Lih~~yr~Lc 93 (800)
...+-+++.++++.+||.+.+++..+.+..| +....+...+.+.|+|.+|.|.+.|+.++..+... ++.......+.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l~~~l~ 127 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQP-DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYLCEPLR 127 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH-HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH--HHHHHHHHHHH
T ss_conf 9999988179989999999999999866580-68999999999776999999999999998758907--78999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 74899992149999999996332113664112222332201578752100000001138999977641234321011002
Q 003722 94 QILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIE 173 (800)
Q Consensus 94 ~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (800)
+.|.+.++.-+-.....+.+..+.. |.
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~-----p~------------------------------------------------ 154 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDIN-----AQ------------------------------------------------ 154 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSS-----CC------------------------------------------------
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHC-----HH------------------------------------------------
T ss_conf 9817998589999999999998519-----24------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH-------HHHHHHH
Q ss_conf 543211347775555666556644689887469999996311004889599999999998169978-------8999899
Q 003722 174 GLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-------DVKRIVK 246 (800)
Q Consensus 174 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~p~~-------~l~~~v~ 246 (800)
. + ++ .-+++.+..+|...++.|+.+|+.++..+.+.. ....+..
T Consensus 155 ----~-----------------------~-~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 155 ----M-----------------------V-ED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp ----C-----------------------H-HH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred ----H-----------------------C-CC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHH
T ss_conf ----1-----------------------4-46-35899999996799843999999999999763787540442699999
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCE-ECCCCCHHHHHHHHHHHHHHCC-----CCCHHHHHHHHH
Q ss_conf 9998732-78860689999999999769963000113113-0358956789999999984059-----887999999999
Q 003722 247 PLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-VSSSDSYQSKALKLEILSSIVT-----ESSISSVFKEFQ 319 (800)
Q Consensus 247 pLi~LL~-s~~eiqyvvL~~I~~l~~~~P~lf~~~l~~Ff-v~~~Dp~~Ik~lKLeIL~~L~~-----e~Nv~~IL~EL~ 319 (800)
.|+..+. .++-.|-.+|+.+..+....+......+..+. +..+....|+......+..+.+ ++-+..++..+.
T Consensus 206 ~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~ 285 (591)
T 2vgl_B 206 KLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLA 285 (591)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99874887882578999999998679985999999999999875898499999999999974024788799999999999
Q ss_pred H---HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 8---3304882289999999999996297217999999999988321026656789987224768999999987099644
Q 003722 320 D---YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH 396 (800)
Q Consensus 320 ~---Yv~~~D~~f~~~aI~aIg~lA~k~p~~a~~~L~~Ll~LL~~~~~~~~~~~~~~~~~vv~E~I~vi~~Li~~~p~~~ 396 (800)
. .+.+.|.+++..++++++.++.+.|......+..++.+ .+.+..+-.+++..+-.+. ++...
T Consensus 286 ~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~------------~~d~~~Ir~~al~~L~~l~--~~~nv 351 (591)
T 2vgl_B 286 PPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVK------------YNDPIYVKLEKLDIMIRLA--SQANI 351 (591)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCC------------TTSCHHHHHHHHHHHHHTC--CSSTH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEEC------------CCCHHHHHHHHHHHHHHHC--CHHHH
T ss_conf 999999669920899999999999986969899988755003------------6993999999999999877--86239
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999863103703479977754235567888772108999999886310370999999999999997625798837
Q 003722 397 EKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMW 476 (800)
Q Consensus 397 ~~~i~~L~~~ld~i~~p~AkasiiWIlGEY~~~~~~ip~i~~dvLr~l~~~F~~E~~~vKlqILta~aKl~~~~p~e~~~ 476 (800)
..++..|..++.+. ++..|..++|-||..+.. .+.....++..+.+-+......++...+.....+....|.....
T Consensus 352 ~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~---~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~ 427 (591)
T 2vgl_B 352 AQVLAELKEYATEV-DVDFVRKAVRAIGRCAIK---VEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES 427 (591)
T ss_dssp HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999998657-999999999999999985---74679999999999983551689999999999999979205789
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999871299957986899999970589
Q 003722 477 TITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (800)
Q Consensus 477 ~i~~l~qyvLela~~D~d~DVRDRAr~y~~LL~~~ 511 (800)
.+..+++. ...+.++++| +...|-|-..+
T Consensus 428 ~v~~L~~~----l~~~~~~~~~--~~~~wilGey~ 456 (591)
T 2vgl_B 428 IIATLCEN----LDSLDEPDAR--AAMIWIVGEYA 456 (591)
T ss_dssp THHHHHHT----TTTCCSHHHH--HHHHHHHHTTC
T ss_pred HHHHHHHH----HHHCCCHHHH--HHHHHHHHCCC
T ss_conf 99999988----8742378999--99999997031
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=106.26 Aligned_cols=284 Identities=12% Similarity=0.037 Sum_probs=123.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--CCCCHHHHHH
Q ss_conf 9999851389990056999999999740-270242888999999881289920799999999985978--6212169999
Q 003722 14 LVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYR 90 (800)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~-ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~--~~~Lih~~yr 90 (800)
+..+...+.+.++-+|+.|+.++.++.. +.|+.....+.+.+...+ |.++.|...++.++..+++. .....+.-..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999985062199999999719999998697989998998898755-78589999999999778760585989999899
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHH
Q ss_conf 99974899992149999999996332113664112---2223322015787521000000011389999776412-3432
Q 003722 91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKES---IMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE-LVNL 166 (800)
Q Consensus 91 ~Lc~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (800)
-|+..+.+-++--+-..++.|...+.. +..+. .+.+. ..+-.+... .... .+..
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~---~~~~~~~~~l~~~-l~~l~~~~~------------------~~~R~~a~~ 148 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHE---HSPSDLEAHFVPL-VKRLAGGDW------------------FTSRTSACG 148 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTT---SCHHHHHHTHHHH-HHHHHTCSS------------------HHHHHHHGG
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHH-HHHHHCCCC------------------CHHHHHHHH
T ss_conf 999987476079999999999999997---9999999999999-999850777------------------179999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CH-HHHH
Q ss_conf 1011002543211347775555666556644689887469999996311004889599999999998169---97-8899
Q 003722 167 VSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PK-EDVK 242 (800)
Q Consensus 167 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~---p~-~~l~ 242 (800)
+...+++. ..+.....++..+..+++..++.|-.+++..+-.++ +. ....
T Consensus 149 ~l~~~~~~--------------------------~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 202 (588)
T 1b3u_A 149 LFSVCYPR--------------------------VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKS 202 (588)
T ss_dssp GHHHHTTT--------------------------SCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHH--------------------------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999985--------------------------6999999999999998489978899999998999999816776799
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCE-ECCCCC-HHHHHHHHHHHHHHCCC---CC-HHHH
Q ss_conf 989999987327-886068999999999976996-3000113113-035895-67899999999840598---87-9999
Q 003722 243 RIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH-LFVPHYEDFF-VSSSDS-YQSKALKLEILSSIVTE---SS-ISSV 314 (800)
Q Consensus 243 ~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P~-lf~~~l~~Ff-v~~~Dp-~~Ik~lKLeIL~~L~~e---~N-v~~I 314 (800)
.+...|..++.. ..+++..++..+..++...+. .+.+++..++ -...|+ ..+|....+.|..++.. .. ...+
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 282 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDL 282 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999998824992889998999999999857988888789999999806997789999999999999981952105589
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999833048822899999999999962972
Q 003722 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (800)
Q Consensus 315 L~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~ 346 (800)
+.-|...+.+.+.+++..+..++|.++...+.
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCH
T ss_conf 99999985899589999999879999997274
No 7
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=101.90 Aligned_cols=106 Identities=13% Similarity=0.049 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 02038799999851389990056999999999740270242888999999881289920799999999985978621216
Q 003722 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIG 86 (800)
Q Consensus 7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~~~Lih 86 (800)
+++.-.++..++|.+.|++|+||-.|+.++.++. .+ +..+.+.+.+..+|.|++|.|-.+|+.++..++....+++.
T Consensus 102 ~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~-~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 102 QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SS-EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 1899999999987668987848999999988629--89-99999999999997599879999999999999987958799
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999997489999214999999999633
Q 003722 87 RNYRNLCQILPDVEEWGQILLIEILLRYV 115 (800)
Q Consensus 87 ~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~ 115 (800)
..+..+..+|.|-|+--+...+.+|...+
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999827997739999999999999
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=99.29 Aligned_cols=269 Identities=10% Similarity=0.087 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC---H---HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999963110048895999999999981699---7---8899989999987327-886068999999999976996300
Q 003722 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP---K---EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV 278 (800)
Q Consensus 206 l~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~p---~---~~l~~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P~lf~ 278 (800)
+..++..+..++++.++.|-.+|++++..+.. . ..+..+...|+.++.. +++++..++..+..++..+|..+.
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999999998567978999999999999986463879988999999999871799778999999999999985779899
Q ss_pred CCCCCCE-----ECCCCCHHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHH-----------HC----------
Q ss_conf 0113113-----035895678999999998405988--------7999999999833-----------04----------
Q 003722 279 PHYEDFF-----VSSSDSYQSKALKLEILSSIVTES--------SISSVFKEFQDYI-----------RD---------- 324 (800)
Q Consensus 279 ~~l~~Ff-----v~~~Dp~~Ik~lKLeIL~~L~~e~--------Nv~~IL~EL~~Yv-----------~~---------- 324 (800)
+|+..++ +..++...+|...++.+..++... .+..++.-+...+ .+
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 88999999999870699689999999999998603657988788898899999987578676799866984432224564
Q ss_pred -CCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCC----CHH
Q ss_conf -88228999999999999629721-799999999998832102665678998722476-89999999870996----449
Q 003722 325 -PDRRFAADTVAAIGLCARKLPKM-ANTCVEGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPS----CHE 397 (800)
Q Consensus 325 -~D~~f~~~aI~aIg~lA~k~p~~-a~~~L~~Ll~LL~~~~~~~~~~~~~~~~~vv~E-~I~vi~~Li~~~p~----~~~ 397 (800)
.+..++..+..+++.++...+.. ....+..+..+++. ..+.+.+ ++..+..|....+. ...
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~------------~~~~~R~aa~~alg~i~~~~~~~~~~~l~ 399 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH------------HEWVVKESGILVLGAIAEGCMQGMIPYLP 399 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC------------SSHHHHHHHHHHHHHTTTTTHHHHGGGHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 011169999999999998746187899999999998559------------98899999999999998635688998799
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999863103703479977754235567888--77210899999988631037099999999999999762579883
Q 003722 398 KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDM 475 (800)
Q Consensus 398 ~~i~~L~~~ld~i~~p~AkasiiWIlGEY~~~~~--~ip~i~~dvLr~l~~~F~~E~~~vKlqILta~aKl~~~~p~e~~ 475 (800)
.++..|...+.+ ..+..|.+.+|.+|.++.... ........++..+.+...+....||.....+...+.-..+....
T Consensus 400 ~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~ 478 (852)
T 4fdd_A 400 ELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 478 (852)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987179-9889999999999999988611047899999999999998589888999999999999997367667
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799999999999
Q 003722 476 WTITRLFSYLLE 487 (800)
Q Consensus 476 ~~i~~l~qyvLe 487 (800)
+-+..++..++.
T Consensus 479 ~~l~~ll~~L~~ 490 (852)
T 4fdd_A 479 PYLAYILDTLVF 490 (852)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 679999999999
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=97.90 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 3879999985138999005699999999974027024---28889999998812899207999999999859
Q 003722 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (800)
Q Consensus 10 ~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~---~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIc 78 (800)
.+.++..+.+++.|.++-||..|+.|+..+....++. ..+.+.+.+..+++|.++.|...|+.+|..++
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999985679789999999999999864638799889999999998717997789999999999999
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=90.53 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=52.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC---CC------
Q ss_conf 879999985138999005699999999974027024288899999988128992079999999998597---86------
Q 003722 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NN------ 81 (800)
Q Consensus 11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP---~~------ 81 (800)
..++..+.+++.|.++.||+.|+.++..+....++...+.+.+.+-..|.|.++.|-.+|..++.+++. ..
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~ 126 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 126 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99999999986699989999999999999975879899999999999866983889999999999999967974444411
Q ss_pred CC-CHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 21-216999999974899-99214999999999633
Q 003722 82 FT-LIGRNYRNLCQILPD-VEEWGQILLIEILLRYV 115 (800)
Q Consensus 82 ~~-Lih~~yr~Lc~~L~d-~dEWgQi~iL~lL~rY~ 115 (800)
.. .....+..|+..+.+ -++-.+...+++|...+
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 788999999999998757884679999999999999
Done!