Query 003723
Match_columns 800
No_of_seqs 248 out of 622
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 2E-113 4E-118 984.3 49.9 640 1-775 296-981 (1010)
2 COG5656 SXM1 Importin, protein 100.0 7.4E-87 1.6E-91 740.9 49.0 611 1-770 293-943 (970)
3 KOG1992 Nuclear export recepto 100.0 4.6E-52 9.9E-57 468.6 39.0 531 1-661 286-866 (960)
4 PF08506 Cse1: Cse1; InterPro 100.0 7.6E-38 1.6E-42 345.6 12.7 223 1-275 135-370 (370)
5 PF03378 CAS_CSE1: CAS/CSE pro 100.0 2.2E-31 4.9E-36 299.7 18.8 305 283-664 19-347 (435)
6 KOG2274 Predicted importin 9 [ 100.0 5.1E-29 1.1E-33 285.2 33.2 506 24-647 311-836 (1005)
7 KOG1993 Nuclear transport rece 99.9 9E-23 1.9E-27 231.1 34.5 490 51-669 369-889 (978)
8 COG5657 CSE1 CAS/CSE protein i 99.8 4.9E-18 1.1E-22 196.4 33.8 515 4-645 283-834 (947)
9 KOG2171 Karyopherin (importin) 99.7 1.7E-13 3.6E-18 163.2 37.5 276 2-339 238-525 (1075)
10 KOG2023 Nuclear transport rece 99.6 2.5E-13 5.5E-18 152.6 27.2 292 23-368 267-593 (885)
11 KOG1241 Karyopherin (importin) 98.5 5.5E-05 1.2E-09 88.0 26.0 186 99-332 337-544 (859)
12 COG5215 KAP95 Karyopherin (imp 98.4 0.0014 3E-08 74.4 34.3 184 98-329 338-540 (858)
13 KOG1991 Nuclear transport rece 98.0 0.036 7.7E-07 67.1 37.9 75 181-255 318-420 (1010)
14 KOG2022 Nuclear transport rece 97.5 0.22 4.8E-06 59.9 33.2 238 49-348 403-650 (982)
15 KOG2171 Karyopherin (importin) 97.4 0.026 5.7E-07 69.3 24.5 125 206-338 119-255 (1075)
16 KOG1824 TATA-binding protein-i 97.2 0.69 1.5E-05 56.2 31.3 130 203-339 172-307 (1233)
17 KOG2023 Nuclear transport rece 96.5 0.037 8.1E-07 64.3 14.2 158 176-347 368-534 (885)
18 KOG1241 Karyopherin (importin) 96.4 1.1 2.5E-05 53.3 24.9 182 176-367 420-627 (859)
19 COG5215 KAP95 Karyopherin (imp 96.1 4 8.7E-05 47.4 30.6 177 180-368 425-629 (858)
20 PF10508 Proteasom_PSMB: Prote 96.0 2.4 5.3E-05 49.8 25.8 101 208-321 80-189 (503)
21 PF08167 RIX1: rRNA processing 95.9 0.075 1.6E-06 52.9 11.3 127 204-338 24-163 (165)
22 PF13513 HEAT_EZ: HEAT-like re 95.8 0.0063 1.4E-07 48.7 2.4 52 221-278 1-55 (55)
23 KOG2274 Predicted importin 9 [ 95.7 7.8 0.00017 47.4 30.3 112 218-339 502-622 (1005)
24 KOG2081 Nuclear transport regu 95.2 0.54 1.2E-05 54.3 15.8 233 27-333 306-552 (559)
25 PTZ00429 beta-adaptin; Provisi 95.0 4.6 0.0001 49.6 24.1 137 205-362 105-244 (746)
26 PF04931 DNA_pol_phi: DNA poly 94.7 0.047 1E-06 67.5 6.3 23 581-603 537-559 (784)
27 PF10446 DUF2457: Protein of u 94.6 0.021 4.6E-07 63.6 2.8 8 745-752 120-128 (458)
28 KOG2021 Nuclear mRNA export fa 94.5 3.7 8E-05 49.2 20.3 224 22-299 349-585 (980)
29 PF12348 CLASP_N: CLASP N term 94.4 0.64 1.4E-05 48.3 13.1 177 175-368 19-208 (228)
30 PF01602 Adaptin_N: Adaptin N 94.3 0.49 1.1E-05 55.4 13.5 123 176-318 55-178 (526)
31 PF12719 Cnd3: Nuclear condens 94.2 3.2 7E-05 45.3 18.6 69 203-280 25-93 (298)
32 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.23 5E-06 45.0 7.8 91 179-279 2-95 (97)
33 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.14 3E-06 46.4 6.1 71 226-302 5-80 (97)
34 KOG1242 Protein containing ada 93.8 5.7 0.00012 46.7 20.3 146 176-339 267-424 (569)
35 cd00020 ARM Armadillo/beta-cat 93.8 0.15 3.2E-06 46.5 6.2 96 176-279 20-119 (120)
36 KOG1058 Vesicle coat complex C 93.6 8.5 0.00018 46.3 21.1 82 205-297 99-181 (948)
37 PF12717 Cnd1: non-SMC mitotic 92.4 0.77 1.7E-05 46.2 9.5 93 220-323 1-93 (178)
38 COG5096 Vesicle coat complex, 92.2 0.69 1.5E-05 56.0 10.1 115 205-335 92-209 (757)
39 PF10363 DUF2435: Protein of u 92.1 0.87 1.9E-05 40.9 8.4 75 245-326 3-80 (92)
40 PF01602 Adaptin_N: Adaptin N 91.9 0.92 2E-05 53.1 10.9 108 176-299 92-201 (526)
41 KOG1832 HIV-1 Vpr-binding prot 91.6 0.13 2.9E-06 61.4 3.2 83 36-124 606-696 (1516)
42 PF12717 Cnd1: non-SMC mitotic 91.4 7.2 0.00016 39.1 15.2 150 179-343 4-159 (178)
43 PF13513 HEAT_EZ: HEAT-like re 91.0 0.24 5.2E-06 39.4 3.3 54 177-233 1-54 (55)
44 PF10446 DUF2457: Protein of u 90.9 0.13 2.8E-06 57.7 2.1 6 754-759 121-126 (458)
45 PF13646 HEAT_2: HEAT repeats; 90.0 1 2.2E-05 39.0 6.7 76 176-276 13-88 (88)
46 KOG0166 Karyopherin (importin) 89.6 0.41 8.9E-06 55.4 4.8 92 180-281 296-394 (514)
47 KOG1248 Uncharacterized conser 88.8 5.5 0.00012 50.0 13.8 156 177-342 755-923 (1176)
48 PF02985 HEAT: HEAT repeat; I 88.7 0.44 9.5E-06 33.5 2.7 30 246-281 1-30 (31)
49 PF13646 HEAT_2: HEAT repeats; 88.2 0.49 1.1E-05 41.0 3.4 48 218-278 11-58 (88)
50 PF05918 API5: Apoptosis inhib 88.2 64 0.0014 38.4 22.5 94 220-322 35-129 (556)
51 KOG1832 HIV-1 Vpr-binding prot 87.7 0.23 5E-06 59.5 1.2 16 267-282 760-775 (1516)
52 PF04931 DNA_pol_phi: DNA poly 87.1 0.99 2.1E-05 56.0 6.3 18 219-236 106-123 (784)
53 KOG0915 Uncharacterized conser 86.6 1.2E+02 0.0026 39.9 27.7 33 309-341 1151-1183(1702)
54 KOG1059 Vesicle coat complex A 86.5 85 0.0018 38.1 27.4 121 205-345 144-267 (877)
55 PF14500 MMS19_N: Dos2-interac 85.7 18 0.0004 38.8 14.3 142 212-369 6-156 (262)
56 cd00020 ARM Armadillo/beta-cat 85.4 1.4 2.9E-05 40.0 4.9 66 209-282 11-80 (120)
57 KOG1058 Vesicle coat complex C 85.3 66 0.0014 39.2 19.2 86 221-318 220-306 (948)
58 KOG1060 Vesicle coat complex A 84.8 3.2 6.9E-05 49.9 8.4 127 218-366 119-246 (968)
59 KOG1242 Protein containing ada 84.0 1E+02 0.0022 36.7 26.0 109 240-365 211-323 (569)
60 PRK09687 putative lyase; Provi 83.8 11 0.00025 40.7 11.8 54 211-277 165-218 (280)
61 KOG0211 Protein phosphatase 2A 83.1 24 0.00053 43.4 15.2 130 101-279 531-663 (759)
62 KOG1824 TATA-binding protein-i 83.1 1.4E+02 0.003 37.6 32.3 155 176-341 492-662 (1233)
63 PF12348 CLASP_N: CLASP N term 81.8 24 0.00052 36.4 13.0 112 179-301 69-188 (228)
64 KOG0213 Splicing factor 3b, su 80.7 1.5E+02 0.0032 36.3 25.0 86 245-336 716-805 (1172)
65 KOG2025 Chromosome condensatio 79.8 1.5E+02 0.0033 36.0 26.9 68 206-281 86-156 (892)
66 COG5656 SXM1 Importin, protein 79.7 1.6E+02 0.0034 36.1 20.8 79 180-258 315-421 (970)
67 PF12460 MMS19_C: RNAPII trans 78.4 56 0.0012 37.4 15.7 209 78-337 186-413 (415)
68 PF04078 Rcd1: Cell differenti 77.5 7.2 0.00016 41.5 7.3 165 156-346 44-220 (262)
69 KOG0213 Splicing factor 3b, su 77.3 1.8E+02 0.004 35.5 24.2 169 153-338 758-933 (1172)
70 COG5209 RCD1 Uncharacterized p 77.1 18 0.00039 37.7 9.7 170 156-347 94-271 (315)
71 PTZ00429 beta-adaptin; Provisi 77.0 34 0.00073 42.3 13.9 90 176-281 118-209 (746)
72 PF10508 Proteasom_PSMB: Prote 76.5 1.3E+02 0.0029 35.4 18.4 72 203-282 36-108 (503)
73 PF04826 Arm_2: Armadillo-like 76.5 53 0.0012 35.1 13.7 109 176-292 26-140 (254)
74 COG5181 HSH155 U2 snRNP splice 76.1 1.7E+02 0.0037 35.0 18.0 122 205-343 521-655 (975)
75 KOG1248 Uncharacterized conser 75.4 2.5E+02 0.0054 36.1 21.7 66 209-281 657-727 (1176)
76 PRK09687 putative lyase; Provi 74.7 43 0.00094 36.3 12.7 83 176-278 104-186 (280)
77 KOG0166 Karyopherin (importin) 72.4 10 0.00022 44.3 7.4 97 176-281 165-267 (514)
78 COG5240 SEC21 Vesicle coat com 70.1 2.4E+02 0.0052 33.6 23.4 91 178-280 239-332 (898)
79 KOG3036 Protein involved in ce 70.0 1.2E+02 0.0027 32.3 13.8 165 156-346 73-249 (293)
80 PF10521 DUF2454: Protein of u 68.6 58 0.0013 35.3 12.0 162 175-346 87-277 (282)
81 PF12719 Cnd3: Nuclear condens 68.3 1.6E+02 0.0035 32.0 15.5 155 176-344 40-207 (298)
82 KOG1993 Nuclear transport rece 68.1 2.4E+02 0.0051 34.9 17.3 88 211-302 618-711 (978)
83 KOG1062 Vesicle coat complex A 67.7 3.1E+02 0.0067 33.9 26.5 67 204-281 106-172 (866)
84 cd08050 TAF6 TATA Binding Prot 67.0 62 0.0013 36.2 12.1 138 205-357 178-330 (343)
85 KOG1240 Protein kinase contain 65.5 53 0.0011 41.9 11.7 85 206-297 423-517 (1431)
86 PF14911 MMS22L_C: S-phase gen 64.8 2.5E+02 0.0054 31.8 16.6 61 218-283 223-290 (373)
87 KOG2160 Armadillo/beta-catenin 62.7 26 0.00056 38.9 7.8 99 175-282 95-198 (342)
88 KOG1992 Nuclear export recepto 62.7 3.9E+02 0.0084 33.3 20.1 53 218-280 16-68 (960)
89 PF10363 DUF2435: Protein of u 61.7 27 0.00059 31.3 6.5 65 208-280 6-72 (92)
90 PF13251 DUF4042: Domain of un 61.6 1E+02 0.0022 31.4 11.3 23 253-281 48-70 (182)
91 PRK13800 putative oxidoreducta 60.2 40 0.00087 42.7 10.1 92 176-296 788-879 (897)
92 KOG0262 RNA polymerase I, larg 58.8 37 0.00081 43.2 8.8 23 244-271 697-719 (1640)
93 PF04147 Nop14: Nop14-like fam 58.0 8.3 0.00018 48.3 3.4 8 782-789 446-453 (840)
94 KOG1060 Vesicle coat complex A 57.9 23 0.0005 43.0 6.7 82 209-299 392-475 (968)
95 KOG4535 HEAT and armadillo rep 57.7 1E+02 0.0023 35.7 11.4 99 175-279 496-602 (728)
96 KOG4653 Uncharacterized conser 57.4 3.7E+02 0.0081 33.6 16.5 140 178-341 825-967 (982)
97 KOG0212 Uncharacterized conser 56.0 1.8E+02 0.0038 34.6 13.1 72 221-301 62-135 (675)
98 PF10274 ParcG: Parkin co-regu 55.2 36 0.00079 34.5 6.8 88 243-336 36-130 (183)
99 KOG1943 Beta-tubulin folding c 55.0 5.1E+02 0.011 33.2 17.5 97 175-280 395-500 (1133)
100 PF08064 UME: UME (NUC010) dom 54.6 70 0.0015 29.4 8.1 77 283-368 4-85 (107)
101 KOG2022 Nuclear transport rece 53.6 5.5E+02 0.012 32.3 28.2 54 283-341 546-599 (982)
102 COG5064 SRP1 Karyopherin (impo 53.4 8.9 0.00019 42.1 2.3 67 211-286 333-404 (526)
103 PF03378 CAS_CSE1: CAS/CSE pro 52.4 4.3E+02 0.0093 30.6 19.0 21 321-341 17-37 (435)
104 KOG0915 Uncharacterized conser 52.0 7.3E+02 0.016 33.2 29.7 110 175-297 969-1088(1702)
105 COG5181 HSH155 U2 snRNP splice 50.7 5.3E+02 0.011 31.2 16.8 131 204-339 603-739 (975)
106 KOG2549 Transcription initiati 50.1 1.2E+02 0.0026 35.7 10.7 134 204-350 206-355 (576)
107 KOG2956 CLIP-associating prote 50.0 3.9E+02 0.0084 31.2 14.4 156 156-337 334-497 (516)
108 KOG2213 Apoptosis inhibitor 5/ 49.2 46 0.001 37.5 6.9 62 228-297 45-106 (460)
109 PF08767 CRM1_C: CRM1 C termin 48.6 2.1E+02 0.0045 31.7 12.2 149 155-317 72-243 (319)
110 PF08064 UME: UME (NUC010) dom 48.2 74 0.0016 29.2 7.2 74 264-338 28-104 (107)
111 KOG0168 Putative ubiquitin fus 47.7 6.7E+02 0.015 31.5 16.7 53 242-300 208-267 (1051)
112 COG5064 SRP1 Karyopherin (impo 47.1 36 0.00077 37.7 5.5 97 178-281 172-273 (526)
113 smart00802 UME Domain in UVSB 46.2 88 0.0019 28.9 7.4 87 245-336 11-102 (107)
114 PF08167 RIX1: rRNA processing 46.2 2.3E+02 0.005 28.0 11.0 94 239-338 19-124 (165)
115 PLN03200 cellulose synthase-in 44.7 97 0.0021 42.5 10.1 58 218-281 620-681 (2102)
116 KOG1061 Vesicle coat complex A 44.7 62 0.0013 39.4 7.5 69 203-282 84-152 (734)
117 KOG0212 Uncharacterized conser 44.6 2.7E+02 0.0059 33.1 12.3 123 101-258 13-138 (675)
118 PF02724 CDC45: CDC45-like pro 43.8 17 0.00037 44.0 2.9 7 528-534 10-16 (622)
119 KOG1061 Vesicle coat complex A 42.6 1.5E+02 0.0032 36.3 10.2 111 175-300 98-212 (734)
120 KOG2038 CAATT-binding transcri 41.6 19 0.00042 43.5 2.8 71 218-295 315-386 (988)
121 KOG1059 Vesicle coat complex A 41.2 4.5E+02 0.0097 32.3 13.6 68 219-297 311-378 (877)
122 KOG1999 RNA polymerase II tran 40.6 11 0.00023 46.6 0.5 13 779-791 125-137 (1024)
123 KOG2021 Nuclear mRNA export fa 40.2 4.8E+02 0.01 32.2 13.7 102 242-349 692-795 (980)
124 PF00514 Arm: Armadillo/beta-c 39.7 31 0.00067 25.5 2.8 29 245-279 12-40 (41)
125 PF04826 Arm_2: Armadillo-like 39.5 1.3E+02 0.0029 32.1 8.6 98 176-282 67-165 (254)
126 smart00802 UME Domain in UVSB 39.0 1.9E+02 0.0042 26.6 8.4 78 283-369 4-86 (107)
127 COG5240 SEC21 Vesicle coat com 38.8 60 0.0013 38.3 6.0 67 205-279 487-554 (898)
128 PF05804 KAP: Kinesin-associat 37.9 8.8E+02 0.019 30.1 19.8 273 106-458 308-629 (708)
129 PF13251 DUF4042: Domain of un 37.9 4.5E+02 0.0098 26.7 12.6 100 176-282 53-176 (182)
130 PF13324 GCIP: Grap2 and cycli 37.0 56 0.0012 35.2 5.4 21 659-679 129-149 (275)
131 PF12460 MMS19_C: RNAPII trans 36.7 71 0.0015 36.6 6.4 89 203-297 317-413 (415)
132 PF08767 CRM1_C: CRM1 C termin 36.2 6.3E+02 0.014 27.9 16.7 61 307-367 90-150 (319)
133 PRK13800 putative oxidoreducta 35.5 55 0.0012 41.5 5.7 57 209-280 625-681 (897)
134 PF04889 Cwf_Cwc_15: Cwf15/Cwc 34.7 34 0.00074 36.4 3.1 12 779-790 231-242 (244)
135 KOG0392 SNF2 family DNA-depend 34.4 61 0.0013 41.6 5.5 114 218-338 827-946 (1549)
136 KOG1078 Vesicle coat complex C 33.1 1.1E+03 0.023 29.5 21.6 89 244-340 281-386 (865)
137 PF02985 HEAT: HEAT repeat; I 32.9 45 0.00097 23.2 2.5 27 209-237 4-30 (31)
138 COG5096 Vesicle coat complex, 32.7 2.3E+02 0.005 35.1 9.9 90 176-281 105-196 (757)
139 KOG1949 Uncharacterized conser 32.6 1E+03 0.023 29.3 24.2 50 225-280 148-203 (1005)
140 KOG2032 Uncharacterized conser 31.8 2.9E+02 0.0063 32.3 9.9 88 205-297 255-349 (533)
141 KOG2076 RNA polymerase III tra 31.4 76 0.0016 39.3 5.6 14 753-766 104-117 (895)
142 PF05327 RRN3: RNA polymerase 31.4 9.8E+02 0.021 28.7 15.6 16 753-768 304-319 (563)
143 PLN03200 cellulose synthase-in 30.5 1.7E+03 0.037 31.3 29.1 95 178-281 461-560 (2102)
144 KOG3064 RNA-binding nuclear pr 30.4 39 0.00085 35.7 2.6 12 586-597 94-105 (303)
145 KOG1967 DNA repair/transcripti 30.0 2.5E+02 0.0055 35.2 9.5 88 242-337 906-1002(1030)
146 KOG2933 Uncharacterized conser 28.8 5.6E+02 0.012 28.4 11.0 115 156-292 131-246 (334)
147 KOG3130 Uncharacterized conser 28.2 37 0.00081 38.0 2.1 7 487-493 105-111 (514)
148 PF02724 CDC45: CDC45-like pro 27.9 48 0.001 40.2 3.3 13 771-783 238-250 (622)
149 COG5218 YCG1 Chromosome conden 26.7 2.1E+02 0.0045 34.2 7.7 65 208-280 94-161 (885)
150 COG5406 Nucleosome binding fac 25.6 38 0.00083 40.1 1.7 10 505-514 690-699 (1001)
151 PF08506 Cse1: Cse1; InterPro 25.0 1.9E+02 0.0041 32.7 7.2 33 309-341 116-148 (370)
152 KOG1240 Protein kinase contain 24.9 4.1E+02 0.0089 34.5 10.2 113 178-301 593-707 (1431)
153 KOG4653 Uncharacterized conser 24.5 6.3E+02 0.014 31.7 11.4 123 209-346 731-859 (982)
154 KOG1077 Vesicle coat complex A 24.3 1E+03 0.022 29.4 12.7 156 187-353 93-259 (938)
155 KOG1189 Global transcriptional 24.2 56 0.0012 39.7 2.7 8 654-661 848-855 (960)
156 PF03115 Astro_capsid: Astrovi 23.9 26 0.00057 43.2 0.0 12 307-318 321-332 (787)
157 KOG1943 Beta-tubulin folding c 23.8 7.8E+02 0.017 31.7 12.2 124 205-338 341-478 (1133)
158 KOG0127 Nucleolar protein fibr 23.8 58 0.0012 38.1 2.7 9 632-640 167-175 (678)
159 PF14500 MMS19_N: Dos2-interac 23.3 9.4E+02 0.02 25.8 13.9 216 21-295 32-255 (262)
160 PF07571 DUF1546: Protein of u 23.1 1.9E+02 0.0041 25.8 5.4 56 219-278 18-76 (92)
161 PF05004 IFRD: Interferon-rela 22.6 1E+03 0.023 26.0 14.2 99 176-280 144-257 (309)
162 PF14003 YlbE: YlbE-like prote 22.5 61 0.0013 27.2 1.9 28 761-789 4-31 (65)
163 KOG2141 Protein involved in hi 22.4 60 0.0013 39.2 2.5 69 670-756 195-263 (822)
164 PF03344 Daxx: Daxx Family; I 22.3 29 0.00063 42.5 0.0 16 443-458 239-254 (713)
165 PF12397 U3snoRNP10: U3 small 22.1 4.8E+02 0.01 24.0 8.2 82 208-297 5-92 (121)
166 KOG0414 Chromosome condensatio 21.8 3.5E+02 0.0076 34.9 8.9 100 174-281 323-429 (1251)
167 PF03130 HEAT_PBS: PBS lyase H 21.8 1.1E+02 0.0024 20.7 2.8 26 223-255 1-26 (27)
168 smart00185 ARM Armadillo/beta- 21.8 77 0.0017 22.6 2.2 28 246-279 13-40 (41)
169 PF05285 SDA1: SDA1; InterPro 21.4 76 0.0017 35.2 3.0 9 627-635 12-20 (324)
170 KOG2137 Protein kinase [Signal 21.0 4.6E+02 0.01 32.1 9.4 73 203-281 383-459 (700)
171 PF10193 Telomere_reg-2: Telom 20.1 3E+02 0.0066 25.6 6.3 76 246-327 4-88 (114)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-113 Score=984.32 Aligned_cols=640 Identities=22% Similarity=0.342 Sum_probs=534.5
Q ss_pred CchhHHHHHHHHHhhcccccCcccCHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHhhccccCChhhHhhHhhCHH
Q 003723 1 MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDAD 80 (800)
Q Consensus 1 ~p~il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~ 80 (800)
+|.|++++||+|++ | +.+.|+|||+++++++|+.+|++++.+||+++||+..|++++|||.||+|++|+|+|++||+
T Consensus 296 ~~~ile~~lk~l~~--~-~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~ 372 (1010)
T KOG1991|consen 296 AQGILEVFLKILEQ--W-RQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPY 372 (1010)
T ss_pred HHHHHHHHHHHHHH--H-HhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHH
Confidence 47899999999999 6 44999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHH
Q 003723 81 EYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFL 160 (800)
Q Consensus 81 EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L 160 (800)
||||+++|+ ++|++|||.||.+||.++ ++||||+ ++|+ ++. |++++|
T Consensus 373 EYiR~~~Di--------~ed~~sp~~Aa~~~l~~~-----------------~~KR~ke-----~l~k-~l~--F~~~Il 419 (1010)
T KOG1991|consen 373 EYIRKKFDI--------FEDGYSPDTAALDFLTTL-----------------VSKRGKE-----TLPK-ILS--FIVDIL 419 (1010)
T ss_pred HHHHhcCch--------hcccCCCcHHHHHHHHHH-----------------HHhcchh-----hhhh-HHH--HHHHHH
Confidence 999999998 799999999999999997 9999887 4554 554 699999
Q ss_pred hcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhH---HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc
Q 003723 161 SRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFT---ANLVRSRVLPLYSVSVCLPYLVASANWILGELASC 237 (800)
Q Consensus 161 ~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~---e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~ 237 (800)
++|..++. ..++.|+|||||+++|+|++.|.| +++|. +.|+.+||+|+|+ |+.|||||||||++|+|++.
T Consensus 420 ~~~~~~~~----~~~~~rqkdGAL~~vgsl~~~L~K-~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~ 492 (1010)
T KOG1991|consen 420 TRYKEASP----PNKNPRQKDGALRMVGSLASILLK-KSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSI 492 (1010)
T ss_pred HhhcccCC----CccChhhhhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhc
Confidence 99987753 457899999999999999999987 55555 8899999999999 89999999999999999976
Q ss_pred --CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-----CCCccHHHHHHHHHHhhcccccchHHHH
Q 003723 238 --LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-----YMPPEWYPLLQVIVGRIGYEDEENSILF 310 (800)
Q Consensus 238 --l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-----~l~p~l~~ll~~Ll~~l~~e~~e~e~l~ 310 (800)
.++.++.++++++.+||.+++ ++||||+||.||+.|+.++ +++|+++++||+||+ |+|+. |||.|+
T Consensus 493 df~d~~~l~~ale~t~~~l~~d~-----~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~-L~ne~-End~Lt 565 (1010)
T KOG1991|consen 493 DFKDPNNLSEALELTHNCLLNDN-----ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK-LSNEV-ENDDLT 565 (1010)
T ss_pred cCCChHHHHHHHHHHHHHhccCC-----cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH-HHHhc-chhHHH
Confidence 788999999999999999554 5999999999999999875 699999999999999 99999 999999
Q ss_pred HHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhhhhh
Q 003723 311 ELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQA 390 (800)
Q Consensus 311 ~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~d~~~d~~~~~~~~~~~~ 390 (800)
.+|+++|+.|+|+++|||++||++|+++|+|++....+ .+ +.++++.++++|
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~------------------------~~--~~~ddk~iaA~G-- 617 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSED------------------------ED--ESDDDKAIAASG-- 617 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCC------------------------CC--ccchHHHHHHHH--
Confidence 99999999999999999999999999999999874211 11 112234456666
Q ss_pred HHHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhcchhHHHHhhHHHHHHHHHHHH------------
Q 003723 391 AIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------ 458 (800)
Q Consensus 391 a~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~~~~~~l~~~v~ef~~~~~~ll------------ 458 (800)
+|+||+||| .|+++.|+++.++|++++|++.++ |++++.|||+|+++++
T Consensus 618 -iL~Ti~Til------------~s~e~~p~vl~~le~~~l~vi~~i------L~~~i~dfyeE~~ei~~~~t~~~~~Isp 678 (1010)
T KOG1991|consen 618 -ILRTISTIL------------LSLENHPEVLKQLEPIVLPVIGFI------LKNDITDFYEELLEIVSSLTFLSKEISP 678 (1010)
T ss_pred -HHHHHHHHH------------HHHhccHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhhhhcccCH
Confidence 699999999 999999999999999999999999 9999999999999999
Q ss_pred HhhHHHHHhh---cccHHhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCChhhHHHHHHHHhc-cccccCchhhHhhHHH
Q 003723 459 GDWHAWEETE---DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLS-EAILQYPSATWRACSC 534 (800)
Q Consensus 459 ~~W~~~~~~~---~~~~~dy~~e~~~~~~~~~L~Nfi~~g~~~~~~~~~~~~~i~~i~~~~~s-~~~~~~~~~~~~~~~~ 534 (800)
.||.+|+.++ ..++++||++|++ .|+|||++|++++..+|.|++.+++||++.++ ++.++ .....+|..
T Consensus 679 ~mW~ll~li~e~~~~~~~dyf~d~~~-----~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D--~d~~~a~kL 751 (1010)
T KOG1991|consen 679 IMWGLLELILEVFQDDGIDYFTDMMP-----ALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED--SDCESACKL 751 (1010)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH-----HHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch--HHHHHHHHH
Confidence 7999999997 6789999999999 99999999999999999999999999996554 44422 212224444
Q ss_pred HHHh-----cCCCCCcccchhhhhhcHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhhccChHHHHHHHHhcCc--ch
Q 003723 535 VHTL-----LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDED--GG 607 (800)
Q Consensus 535 ~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~~~~~~~~~~~l~vi~~~~~y~p~~~l~~L~~~~~--~~ 607 (800)
++.+ |.+++| +|.|+++++.|+++ ..+++.+++++++|+++|+||||..|+++|++.|. .|
T Consensus 752 le~iiL~~kg~~dq~-----------iplf~~~a~~~l~~-~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~f 819 (1010)
T KOG1991|consen 752 LEVIILNCKGLLDQY-----------IPLFLELALSRLTR-EVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNF 819 (1010)
T ss_pred HHHHHHHhcCcHhhH-----------hHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccH
Confidence 5544 567888 99999999999986 36788999999999999999999999999999996 89
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHHhhh--hcCC-CchhhHHHH---HHHHHHHHHHHHHHhhhcccC
Q 003723 608 FALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL--LGLG-NPGSSLLQD---CYASLMEAAVQLKEVQEDEEN 681 (800)
Q Consensus 608 f~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sLl~~~--p~l~-~~~~~l~~~---~~~~L~~a~~~~~e~~~~~~~ 681 (800)
|..||+.+ ..++++||||+||+||++|++.+ |.+. ...++++.. ++.+||+|++.|.+.++++++
T Consensus 820 f~~wf~~~---------~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~ 890 (1010)
T KOG1991|consen 820 FTLWFQFI---------NQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLLSLPEALAERAQVEEEDSE 890 (1010)
T ss_pred HHHHHHHH---------HHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999 78888999999999999999984 3332 223344444 599999999999999998764
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhccccccccCCCCCCc--ccccccc--CCccchhh
Q 003723 682 DEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVED--QEHDIEL--GSLDEVDQ 757 (800)
Q Consensus 682 ~~~~~~~~~d~d~~~~d~~~~~~~~d~de~~e~~~eyle~l~~~a~~~~~~~~~d~~~~~d--~~eE~~l--spLD~v~~ 757 (800)
| +++++++++++ -.+|+||.++++++|++.+++-+..-.+..++|||+|+| +++|+++ ||||.||+
T Consensus 891 e----~~~~~~~~~e~------~~~d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~ 960 (1010)
T KOG1991|consen 891 E----GEEEDDDEEED------FIDDEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDP 960 (1010)
T ss_pred c----ccCCCCcchhh------ccCccccccccchhHHHhhccccccccccccccccccchhccccccccccCcccccch
Confidence 2 11111111110 112333344445567777766432211212223334443 4455555 99999999
Q ss_pred HHHHHH---HHhhhCcccccc
Q 003723 758 LKVVAS---SIERYHNVIMQG 775 (800)
Q Consensus 758 ~~~~~~---~~~~~~~~~~~~ 775 (800)
|..|++ .+|+.+++||+.
T Consensus 961 f~~f~~~i~~lq~~d~~~yq~ 981 (1010)
T KOG1991|consen 961 FQLFKEAITNLQSSDAVRYQK 981 (1010)
T ss_pred HHHHHHHHHhhhccChHHHHH
Confidence 988655 556778899984
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-87 Score=740.88 Aligned_cols=611 Identities=18% Similarity=0.206 Sum_probs=503.3
Q ss_pred CchhHHHHHHHHHhhcccccCcccCHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHhhccccCChhhHhhHhhCHH
Q 003723 1 MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDAD 80 (800)
Q Consensus 1 ~p~il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~ 80 (800)
+|.|++.++++|+. |.++..|+||+++|.+..|+..|+..+.+|++++||+.-|++++|||.+|++++++|+||+||+
T Consensus 293 vp~il~tffkqie~--wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~ 370 (970)
T COG5656 293 VPMILATFFKQIEE--WGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPD 370 (970)
T ss_pred HHHHHHHHHHHHHH--hhcCCeecchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHH
Confidence 48899999999999 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHh--HHH
Q 003723 81 EYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLP 158 (800)
Q Consensus 81 EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~--i~~ 158 (800)
|||||++|. +++.+||..||..|+..+ ..||||. |+++|+ +..
T Consensus 371 eyirry~df--------~d~g~spdlaal~fl~~~-----------------~sKrke~----------TfqgiLsf~~s 415 (970)
T COG5656 371 EYIRRYYDF--------FDNGLSPDLAALFFLIIS-----------------KSKRKEE----------TFQGILSFLLS 415 (970)
T ss_pred HHHHHhcch--------hcCCCChhHHHHHHHHHH-----------------hcccchh----------hhhhHHHHHHH
Confidence 999999997 788999999999999886 7788887 666665 999
Q ss_pred HHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchh---HHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhh
Q 003723 159 FLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEF---TANLVRSRVLPLYSVSVCLPYLVASANWILGELA 235 (800)
Q Consensus 159 ~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~---~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~ 235 (800)
+|+++.+.+. +.+|.|++||||++++++.+.+.+ .+++ .+.|+.+||+|.|+ ++++|||+|||.++++|+
T Consensus 416 il~qsaa~ps----n~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~e 488 (970)
T COG5656 416 ILGQSAATPS----NIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTIE 488 (970)
T ss_pred HHhcccCCCC----ccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHHH
Confidence 9998876553 457899999999999999997765 4444 38899999999999 899999999999999996
Q ss_pred cc-CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC----CCCccHHHHHHHHHHhhcccccchHHHH
Q 003723 236 SC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND----YMPPEWYPLLQVIVGRIGYEDEENSILF 310 (800)
Q Consensus 236 ~~-l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~----~l~p~l~~ll~~Ll~~l~~e~~e~e~l~ 310 (800)
.. .++..+.++|+++.+||++.. +||+++||.||+.|+.+. .++.+++++||+|+. |+|+. |.|.|+
T Consensus 489 eDfkd~~ill~aye~t~ncl~nn~------lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLs-LSn~f-eiD~LS 560 (970)
T COG5656 489 EDFKDNGILLEAYENTHNCLKNNH------LPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLS-LSNTF-EIDPLS 560 (970)
T ss_pred HhcccchHHHHHHHHHHHHHhcCC------cchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHH-hcccc-cchHHH
Confidence 65 678889999999999999854 999999999999999875 688899999999999 99999 999999
Q ss_pred HHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhhhhh
Q 003723 311 ELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQA 390 (800)
Q Consensus 311 ~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~d~~~d~~~~~~~~~~~~ 390 (800)
.+|+.+|+.|+++++|||++|+..|+++|+|++.+..++ + +|...-.+++.+++.|
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~en--------------------s--~d~~s~vDDKqmaasG-- 616 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLEN--------------------S--SDTSSVVDDKQMAASG-- 616 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcC--------------------C--ccccccccHHHHHHHH--
Confidence 999999999999999999999999999999997655443 1 1111111122333444
Q ss_pred HHHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhcchhHHHHhhHHHHHHHHHHHH------------
Q 003723 391 AIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------ 458 (800)
Q Consensus 391 a~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~~~~~~l~~~v~ef~~~~~~ll------------ 458 (800)
+|+|++|++ .|+++.|.+++.+++.++|++.+| ++|++.+||.|+++++
T Consensus 617 -iL~T~~smi------------LSlen~p~vLk~le~slypvi~Fi------lkn~i~dfy~Ea~dildg~tf~skeI~p 677 (970)
T COG5656 617 -ILRTIESMI------------LSLENRPLVLKYLEVSLYPVISFI------LKNEISDFYQEALDILDGYTFMSKEIEP 677 (970)
T ss_pred -HHHHHHHHH------------HhcccchHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHhhhhHHHHHhhh
Confidence 899999999 999999999999999999999999 9999999999999999
Q ss_pred HhhHHHHHhh----cccHHhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCChhhHHHHHH-HHhccccccCchhhHhhHH
Q 003723 459 GDWHAWEETE----DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIG-AFLSEAILQYPSATWRACS 533 (800)
Q Consensus 459 ~~W~~~~~~~----~~~~~dy~~e~~~~~~~~~L~Nfi~~g~~~~~~~~~~~~~i~~i~~-~~~s~~~~~~~~~~~~~~~ 533 (800)
.||.+|+.++ +..-.+|+++.++ .|+|||+||+.+|.+++.|.+.+++|++ .+.++.. ...|....
T Consensus 678 imwgi~Ell~~~l~~~~t~~y~ee~~~-----al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n----~l~D~~~v 748 (970)
T COG5656 678 IMWGIFELLLNLLIDEITAVYSEEVAD-----ALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEEN----FLEDFIGV 748 (970)
T ss_pred hhhHHHHHHHhcccccchhhhHHHHHH-----HHHHHHHhCccccccccchhHHHHHHHHHHHcchhh----hHHHHHHH
Confidence 7999999997 2221499999999 9999999999999999999999999999 6666665 44555555
Q ss_pred H--HHHh-cCCCCCcccchhhhhhcHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhhccChHHHHHHHHhcCc--chH
Q 003723 534 C--VHTL-LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDED--GGF 608 (800)
Q Consensus 534 ~--~~~l-~~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~~~~~~~~~~~l~vi~~~~~y~p~~~l~~L~~~~~--~~f 608 (800)
| ++.+ +++..- ....++|-|+.++-+.+..... ...+++..++++++|++++|..|+++|++.|. .||
T Consensus 749 c~i~e~l~Ln~rd~------Ll~qy~plfi~vags~l~~~dE-lg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF 821 (970)
T COG5656 749 CRIIESLILNIRDE------LLSQYLPLFISVAGSGLKMIDE-LGPASVYALELIINNLILRPKETLQILEEQGYLQSFF 821 (970)
T ss_pred HHHHHHHHHHccch------hHHhhhHHHHHHHhhhhhcccc-ccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHH
Confidence 5 4544 222220 1222399999988866654222 24899999999999999999999999999997 899
Q ss_pred HHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHHhhh--h-cCC---CchhhHHHHHHHHHHHHHHHHHHhhhcccCC
Q 003723 609 ALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL--L-GLG---NPGSSLLQDCYASLMEAAVQLKEVQEDEEND 682 (800)
Q Consensus 609 ~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sLl~~~--p-~l~---~~~~~l~~~~~~~L~~a~~~~~e~~~~~~~~ 682 (800)
+.||+.+ |+|+|+||||||++++.+++..+ + .+. +..++++..+..+||+|++.|. ++.+++
T Consensus 822 ~~wf~~i---------pkfkrvhdkKLsvlaIltii~l~~v~~~~e~lv~nLg~vlv~l~~sLPeAir~ra---ke~d~e 889 (970)
T COG5656 822 EKWFSQI---------PKFKRVHDKKLSVLAILTIIRLQEVGALPELLVHNLGEVLVALVTSLPEAIRLRA---KEKDDE 889 (970)
T ss_pred HHHHhcC---------cchhhhhhhHhHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHhhHHHHHHHH---hhcccC
Confidence 9999987 99999999999999999999876 2 222 2345555666899999999998 333321
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhccccccccCCCCCCcccccccc--CCccchhhHHH
Q 003723 683 EGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIEL--GSLDEVDQLKV 760 (800)
Q Consensus 683 ~~~~~~~~d~d~~~~d~~~~~~~~d~de~~e~~~eyle~l~~~a~~~~~~~~~d~~~~~d~~eE~~l--spLD~v~~~~~ 760 (800)
.+..+ | -..||.| ..++ . |..+. ..++|||+ |.||.||||+.
T Consensus 890 ~f~e~---d----------------------lt~ey~e--------~vD~-~-D~~et-fileEDplfeT~LDqvdpf~~ 933 (970)
T COG5656 890 DFPEP---D----------------------LTTEYDE--------CVDA-S-DISET-FILEEDPLFETELDQVDPFGY 933 (970)
T ss_pred CCCCc---c----------------------cchhhhc--------cccc-c-chhhh-hhhcccchhhhhhhhcchHHH
Confidence 01100 0 0111211 1111 1 11111 23678888 99999999999
Q ss_pred HHHHHhhhCc
Q 003723 761 VASSIERYHN 770 (800)
Q Consensus 761 ~~~~~~~~~~ 770 (800)
|.+++-+..|
T Consensus 934 f~ef~~nLq~ 943 (970)
T COG5656 934 FSEFLSNLQP 943 (970)
T ss_pred HHHHHHhCCC
Confidence 8888854433
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-52 Score=468.65 Aligned_cols=531 Identities=17% Similarity=0.200 Sum_probs=433.3
Q ss_pred CchhHHHHHHHHHhhcccccCcccCHHHHHHHHHHHHHHhccCcccccc--cchHHHHHHHHhhccccCChhhHhhHhhC
Q 003723 1 MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLV--SPHFSVLLDKAIFPALVLNEKDISEWEED 78 (800)
Q Consensus 1 ~p~il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~~ll--~p~l~~Ll~~vIfP~l~~~e~D~Elwe~D 78 (800)
+|+|+++.|.++.. .+..--.|.+++.+++||+.+++.+++-.++ ...+.+|++.+|+|+++++++|+|+||||
T Consensus 286 l~~fv~~~W~LL~~----~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~ 361 (960)
T KOG1992|consen 286 LPDFVTATWNLLVS----TSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDN 361 (960)
T ss_pred HHHHHHHHHHHHHh----cCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccC
Confidence 47899999999976 4455568999999999999999987776677 45699999999999999999999999999
Q ss_pred HHHHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHh---
Q 003723 79 ADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--- 155 (800)
Q Consensus 79 P~EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~--- 155 (800)
|.|||||++++ +|.+|+|++|++|++.| |+++ ++ .+.+++
T Consensus 362 pleYiRRDlEG---------sDvdTRRR~a~dlvrgL-----------------~~~f-e~----------~vt~v~~~~ 404 (960)
T KOG1992|consen 362 PLEYIRRDLEG---------SDVDTRRRAAIDLVRGL-----------------CKNF-EG----------QVTGVFSSE 404 (960)
T ss_pred HHHHHHHhccc---------CCcchhHHHHHHHHHHH-----------------HHHh-cc----------hhHHHHHHH
Confidence 99999999984 78999999999999998 5554 33 233443
Q ss_pred HHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhH--------HHHHHHhhhhcccC-C-CCCcchHH
Q 003723 156 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFT--------ANLVRSRVLPLYSV-S-VCLPYLVA 225 (800)
Q Consensus 156 i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~--------e~fl~~~VlP~l~~-~-s~~p~Lra 225 (800)
+...|++|..+| +.|||.||.+++++.+++.....++.+.. ..||.++|+|+|.+ + .++|+|||
T Consensus 405 v~~~l~~y~~nP------S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka 478 (960)
T KOG1992|consen 405 VQRLLDQYSKNP------SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKA 478 (960)
T ss_pred HHHHHHHhccCC------CccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhh
Confidence 899999998775 46899999999999999987655444432 67999999999995 2 57999999
Q ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh--cC---------CCCccHHHHHHH
Q 003723 226 SANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--ND---------YMPPEWYPLLQV 294 (800)
Q Consensus 226 rA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~--~~---------~l~p~l~~ll~~ 294 (800)
.|++++-.|+++++++.+..+++.+++.|..+. .+|+.|||.|+..++. +. .+.|++..+++.
T Consensus 479 ~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s------~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~n 552 (960)
T KOG1992|consen 479 DAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES------RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTN 552 (960)
T ss_pred cccceeeeecccCChHHHHHHHHHHHHhccCcc------hHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHH
Confidence 999999999999999999999999999999876 9999999999999954 21 589999999999
Q ss_pred HHHhhcccc-cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhhhhhh
Q 003723 295 IVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR 373 (800)
Q Consensus 295 Ll~~l~~e~-~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~ 373 (800)
|++.++... .||+++|++++|++..-++.+.|+++.++.+|.+...++.++|.+| +|+||.||++|.+.+
T Consensus 553 Lf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P--~fnHYLFEsi~~li~------- 623 (960)
T KOG1992|consen 553 LFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNP--QFNHYLFESIGLLIR------- 623 (960)
T ss_pred HHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHH-------
Confidence 998777655 7999999999999999999999999999999999999999988885 999997766665333
Q ss_pred hhhhhhcccchhhhhhhHHHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhcchhHHHHhhHHHHHHH
Q 003723 374 EEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLV 453 (800)
Q Consensus 374 d~~~d~~~~~~~~~~~~a~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~~~~~~l~~~v~ef~~~ 453 (800)
.+....|+.+.+++..|+|+++.| |.+|+.||++|
T Consensus 624 ---------------------------------------~t~~~~~~~vs~~e~aL~p~fq~I------l~eDI~EfiPY 658 (960)
T KOG1992|consen 624 ---------------------------------------KTCKANPSAVSSLEEALFPVFQTI------LSEDIQEFIPY 658 (960)
T ss_pred ---------------------------------------HHhccCchHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 334567888889999999999999 99999999999
Q ss_pred HHHHHHhhHHHHHhhcccHHhhHHHHhhh---------hhhhh-----hhhhhcccCCCCCCCCCChhhHHHHHHHHhcc
Q 003723 454 WADLIGDWHAWEETEDLSVFDCIKEIVNL---------HSKYE-----LKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSE 519 (800)
Q Consensus 454 ~~~ll~~W~~~~~~~~~~~~dy~~e~~~~---------~~~~~-----L~Nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~ 519 (800)
++++++..- +...+...+.+..++|+ .||+| |..|+.+|+..+.++ +.+..+++++++++++
T Consensus 659 vfQlla~lv---e~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~-~~l~~iLGifqkLiaS 734 (960)
T KOG1992|consen 659 VFQLLAVLV---EHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAA-DKLSGILGIFQKLIAS 734 (960)
T ss_pred HHHHHHHHH---HhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhccc-ccchhHHHHHHHHhcC
Confidence 999996532 22233345555555553 56665 899999999998854 4688999999999988
Q ss_pred ccccCchhhHhhHHH-HHHhc--CCCCCcccchhhhhhcHHHHHHHHHHHhhccCCCCcchhH-HHHHHHHHhhccChHH
Q 003723 520 AILQYPSATWRACSC-VHTLL--HVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWK-PVVLAISSCYLCYPAV 595 (800)
Q Consensus 520 ~~~~~~~~~~~~~~~-~~~l~--~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~~~~~~~~~-~~l~vi~~~~~y~p~~ 595 (800)
+..| +.++..... +..+. .+.+| +.++..+.++|++ .+||..|.+ ..+.+...++.+....
T Consensus 735 ka~D--h~GF~LLn~i~~~~~~~~~~py-----------~k~i~~llf~Rlq--nskT~kf~k~~~vF~~~~~ik~~~~~ 799 (960)
T KOG1992|consen 735 KAND--HHGFYLLNTIIESIPPNELAPY-----------MKQIFGLLFQRLQ--NSKTEKFVKSFIVFFSLFTIKKGGLM 799 (960)
T ss_pred cccc--hhHHHHHHHHHhcCCHhhhhHH-----------HHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 7755 444444333 33332 23444 9999999999998 466655554 4666667778888888
Q ss_pred HHHHHHhcCcchHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHHhhhhcCC-----CchhhHHHHH
Q 003723 596 VEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLG-----NPGSSLLQDC 661 (800)
Q Consensus 596 ~l~~L~~~~~~~f~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sLl~~~p~l~-----~~~~~l~~~~ 661 (800)
..++.+.+|++.|++..+++.. +..++..+..|||++.+|.+++++..|.+. ..|+.++..+
T Consensus 800 l~e~~d~IQ~~~fg~l~e~~ii----~~l~~i~~~~~rk~~avg~~~l~~e~~~~~d~~y~~l~~~ll~si 866 (960)
T KOG1992|consen 800 LAEVIDGIQPGMFGMLLENFII----PELPKIILRVDRKIMAVGATGLLTETPELLDQKYAKLWGPLLFSI 866 (960)
T ss_pred HHHHHhhcchhHHHHHHHHhcc----ccchhhhhhhhHHHHHHHHhhhhhhcHHhhhHHHHhhhhhHHHHH
Confidence 9999999999999887776643 455788889999999999999998776432 3466665544
No 4
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=7.6e-38 Score=345.60 Aligned_cols=223 Identities=26% Similarity=0.361 Sum_probs=179.5
Q ss_pred CchhHHHHHHHHHhhcccccCcccCHHHHHHHHHHHHHHhccCcccccc--cchHHHHHHHHhhccccCChhhHhhHhhC
Q 003723 1 MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLV--SPHFSVLLDKAIFPALVLNEKDISEWEED 78 (800)
Q Consensus 1 ~p~il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~~ll--~p~l~~Ll~~vIfP~l~~~e~D~Elwe~D 78 (800)
+|+|++.+|+++.. +..+.. .|.+++.+++||+++++...++.++ +||+.+|++++|||+||+|++|+|+||+|
T Consensus 135 l~~fv~~vw~lL~~--~~~~~~--~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEdd 210 (370)
T PF08506_consen 135 LPTFVQAVWNLLTK--ISQQPK--YDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDD 210 (370)
T ss_dssp HHHHHHHHHHHHTC----SSGG--GHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH--hhhccc--ccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccC
Confidence 47899999999988 444444 4999999999999988865544466 68999999999999999999999999999
Q ss_pred HHHHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhH--hH
Q 003723 79 ADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--LV 156 (800)
Q Consensus 79 P~EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i--~i 156 (800)
|.|||||++|+ +|.+|||+||++||++| +++|++. ..+.+ +|
T Consensus 211 P~EYIrrd~e~---------sd~~TrR~AA~dfl~~L-----------------~~~~~~~----------v~~i~~~~i 254 (370)
T PF08506_consen 211 PEEYIRRDLEG---------SDSDTRRRAACDFLRSL-----------------CKKFEKQ----------VTSILMQYI 254 (370)
T ss_dssp HHHHHHHHSCS---------S---SHHHHHHHHHHHH-----------------HHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHhhccc---------cccCCcHHHHHHHHHHH-----------------HHHHhHH----------HHHHHHHHH
Confidence 99999999984 68999999999999998 7777654 22211 38
Q ss_pred HHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchh--------HHHHHHHhhhhcccC-CCCCcchHHHH
Q 003723 157 LPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEF--------TANLVRSRVLPLYSV-SVCLPYLVASA 227 (800)
Q Consensus 157 ~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~--------~e~fl~~~VlP~l~~-~s~~p~LrarA 227 (800)
+++|++|.+.+ ..+||.|||||+++|+|+.+....+.|+ +++|+.+||+|+|+. .+.+|+|||||
T Consensus 255 ~~~l~~y~~~~------~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~a 328 (370)
T PF08506_consen 255 QQLLQQYASNP------SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADA 328 (370)
T ss_dssp HHHHHHHHH-T------TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHH
T ss_pred HHHHHHHhhCC------cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHH
Confidence 99999887654 3589999999999999998875433332 278999999999993 36899999999
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHH
Q 003723 228 NWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 275 (800)
Q Consensus 228 ~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL 275 (800)
||++..|+++++++.+..+++.++++|.+++ .+|+.|||.||
T Consensus 329 ik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~------~vv~tyAA~~i 370 (370)
T PF08506_consen 329 IKFLYTFRNQLPKEQLLQIFPLLVNHLQSSS------YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-------HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------cchhhhhhhhC
Confidence 9999999999999999999999999999987 99999999986
No 5
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.97 E-value=2.2e-31 Score=299.68 Aligned_cols=305 Identities=15% Similarity=0.133 Sum_probs=217.4
Q ss_pred CCCccHHHHHHHHHHhhcccc-cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 003723 283 YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAAL 361 (800)
Q Consensus 283 ~l~p~l~~ll~~Ll~~l~~e~-~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~l 361 (800)
.+.|++.+++++|++.+.... .|||++|+|+||++...++.+.|++..++++|+.++..++++|.+ |.|+||.||++
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsn--P~FnHylFEsi 96 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSN--PRFNHYLFESI 96 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--cchhhhHHHHH
Confidence 799999999999999776654 699999999999999999999999999999999999888887776 59999988777
Q ss_pred HHHHHhhhhhhhhhhhhhcccchhhhhhhHHHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhcchhH
Q 003723 362 ALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNV 441 (800)
Q Consensus 362 a~~~~~~~~~~~d~~~d~~~~~~~~~~~~a~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~~~~~ 441 (800)
+++.+. ..+.+|+.+.++|+.++|++..|
T Consensus 97 ~~lir~----------------------------------------------~~~~~~~~v~~~E~~L~P~f~~I----- 125 (435)
T PF03378_consen 97 GALIRF----------------------------------------------VCEADPEAVSQFEEALFPPFQEI----- 125 (435)
T ss_dssp HHHHHH----------------------------------------------S-GGGHH---HHHHHHHHHHHHH-----
T ss_pred HHHHHh----------------------------------------------ccCCChhHHHHHHHHHHHHHHHH-----
Confidence 765542 23346677788999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhhHHHHHhhc-ccHHhhHHHHhhh---------hhhh-----hhhhhhcccCCCCCCCCCCh
Q 003723 442 IEELKLSELLLVWADLIGDWHAWEETED-LSVFDCIKEIVNL---------HSKY-----ELKNFIVRQMPPPPAPPVPP 506 (800)
Q Consensus 442 ~l~~~v~ef~~~~~~ll~~W~~~~~~~~-~~~~dy~~e~~~~---------~~~~-----~L~Nfi~~g~~~~~~~~~~~ 506 (800)
|+++|.||++|+||+++..- +.+. +...+.+..+++. .||+ .|++||.+++..+.++ +++
T Consensus 126 -Lq~dV~EF~PYvfQIla~Ll---e~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~-~~l 200 (435)
T PF03378_consen 126 -LQQDVQEFIPYVFQILAQLL---ELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVAN-NQL 200 (435)
T ss_dssp -HHTT-TTTHHHHHHHHHHHH---HHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG-----S-C
T ss_pred -HHHHHHHHHHHHHHHHHHHH---HcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcch-hhH
Confidence 99999999999999995421 1122 2333444444442 4454 4999999999998654 689
Q ss_pred hhHHHHHHHHhccccccCchhhHhhHHH-HHHh--cCCCCCcccchhhhhhcHHHHHHHHHHHhhccCCCCcchhHH-HH
Q 003723 507 QSIIEGIGAFLSEAILQYPSATWRACSC-VHTL--LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKP-VV 582 (800)
Q Consensus 507 ~~i~~i~~~~~s~~~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~~~~~~~~~~-~l 582 (800)
+.++++|+++++++..| ...+..... ++.+ ..+.+| ++.|+.++++||++ +||..|.+. ++
T Consensus 201 ~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~y-----------l~~I~~lll~RLq~--skT~kf~~~fv~ 265 (435)
T PF03378_consen 201 EPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPY-----------LKQIFTLLLTRLQS--SKTEKFVKRFVV 265 (435)
T ss_dssp HHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGG-----------HHHHHHHHHHHHHH--C--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHH-----------HHHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence 99999999999888755 444444433 4444 235556 99999999999985 566666544 55
Q ss_pred HHHHHhhccChHHHHHHHHhcCcchHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHHhhhhc----CCCchhhHH
Q 003723 583 LAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLG----LGNPGSSLL 658 (800)
Q Consensus 583 ~vi~~~~~y~p~~~l~~L~~~~~~~f~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sLl~~~p~----l~~~~~~l~ 658 (800)
.+.+.+.+|+|+.+++.++++|+++|.++++.+.. +..+++.+.+|||+|++|+++||+..+. ..+.|+.++
T Consensus 266 F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~l----p~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll 341 (435)
T PF03378_consen 266 FLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWL----PDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLL 341 (435)
T ss_dssp HHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHH----HHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhc----CchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHH
Confidence 55666778999999999999999877555553322 2238999999999999999999987642 234677777
Q ss_pred HHHHHH
Q 003723 659 QDCYAS 664 (800)
Q Consensus 659 ~~~~~~ 664 (800)
..+++-
T Consensus 342 ~~Ll~l 347 (435)
T PF03378_consen 342 EALLKL 347 (435)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 6
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.97 E-value=5.1e-29 Score=285.18 Aligned_cols=506 Identities=16% Similarity=0.113 Sum_probs=360.5
Q ss_pred cCHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHhhccccCChhhHhhHhhCHHHHHHHcCCCchhhhccccccccc
Q 003723 24 LQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFT 103 (800)
Q Consensus 24 ls~~~~~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~g~~ed~~S 103 (800)
--+.++.++++|++.+++.....+.++..+..+++..|. +++++++++|.|.+||++||.++.+ .++
T Consensus 311 ~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~-y~Qlseeqie~w~sD~~~fV~dEd~------------~~~ 377 (1005)
T KOG2274|consen 311 SVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVA-YLQLSEEQIEVWTSDVNQFVADEDD------------GYT 377 (1005)
T ss_pred ChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHhhHHHHHHHhccHHHhhccCCC------------Cch
Confidence 345788999999999999988888888889999998875 6999999999999999999998754 389
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHHHHH
Q 003723 104 ARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGV 183 (800)
Q Consensus 104 ~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~kdga 183 (800)
.|.++.+++.+++..||.++..+... +++++... .. +.-.++ ...|||..+++
T Consensus 378 ~~~~~rd~~~~v~~~f~~~~i~~i~~--a~~~~~~e-----------s~---at~~~~-----------~~~~wk~qea~ 430 (1005)
T KOG2274|consen 378 ARISVRDLLLEVITTFGNEGINPIQD--AAGRHFQE-----------SQ---ATYLFN-----------NESWWKIQEAL 430 (1005)
T ss_pred hhhhHHHHHHHHHHhccchhhhHHHH--HHHHHHHH-----------HH---HHHHhc-----------chHHHHHHHHH
Confidence 99999999999988888777664333 22222111 00 111111 34699999999
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc--CCcchHHHHHHHHHHhhccCCCCC
Q 003723 184 LMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGD 261 (800)
Q Consensus 184 L~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~v~~~ll~~L~~~~~~~ 261 (800)
|.+.++...--. ...+ -..+...+.-.+.. +..|+|-+||.|++++|++. .+++.+..++...++++..+.
T Consensus 431 l~a~~~~~~~~~--~dd~-l~~l~~~~~~~l~~-~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~--- 503 (1005)
T KOG2274|consen 431 LVAAESVRIDDA--NDDK-LIELTIMIDNGLVY-QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDV--- 503 (1005)
T ss_pred HHHHhhcccCcc--hHHH-HHHHHHHHHhhccc-ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC---
Confidence 999988762100 0011 12233333333432 57899999999999999998 789999999999999999876
Q ss_pred CCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhhcccccchHH---HHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Q 003723 262 TSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSI---LFELLSSVVGAANENVADHIPYIVSSLVAA 338 (800)
Q Consensus 262 ~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l~~e~~e~e~---l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~ 338 (800)
..|||+.|++|+..++.-..+.|..+.++..|+. +.... +.|. ||++|..+|..-.+.-..-...|++.+.+.
T Consensus 504 --~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~q-las~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 504 --PPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQ-LASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred --CCchhHHHHHHHHhccCceeccccchHHHHHHHH-Hcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 5999999999999999766899999999999999 65554 4444 445555555544444444567899999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhhhhhHHHHHHHHHHHHhhhhccCccccccCCC
Q 003723 339 ISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAP 418 (800)
Q Consensus 339 f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~d~~~d~~~~~~~~~~~~a~l~ti~tll~~~~~~~~~~~~~s~~~~ 418 (800)
|+++..+|--. ...+++|+.|.+.+.|. ..-|+.+++|+.+++++ ..-..+
T Consensus 580 F~k~s~DP~V~--~~~qd~f~el~q~~~~~-----------------g~m~e~~iPslisil~~----------~~~~~~ 630 (1005)
T KOG2274|consen 580 FLKYSEDPQVA--SLAQDLFEELLQIAANY-----------------GPMQERLIPSLISVLQL----------NADKAP 630 (1005)
T ss_pred HHHhcCCchHH--HHHHHHHHHHHHHHHhh-----------------cchHHHHHHHHHHHHcC----------cccccC
Confidence 99999887443 56677899998866655 23344479999999942 111334
Q ss_pred cchHHHHHHHHHHHHHHhcchhHHHHhhHHHHHHHHHHHHHhhHHHHHhh--cccHHhhHHHHhhhhhhhhhhhhhcccC
Q 003723 419 PSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETE--DLSVFDCIKEIVNLHSKYELKNFIVRQM 496 (800)
Q Consensus 419 ~~~~~~le~~l~pii~~i~~~~~~l~~~v~ef~~~~~~ll~~W~~~~~~~--~~~~~dy~~e~~~~~~~~~L~Nfi~~g~ 496 (800)
+..+.-.-.++--+++..+++ |.+ .++.++|.-++.- .+| +...... |.-||+.||++++
T Consensus 631 ~~l~~~aidvLttvvr~tp~p---L~~---~l~~~~FpaVak~----tlHsdD~~tlQ~--------~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 631 AGLCAIAIDVLTTVLRNTPSP---LPN---LLICYAFPAVAKI----TLHSDDHETLQN--------ATECLRALISVTL 692 (1005)
T ss_pred chhhHHHHHHHHHHHhcCCCC---ccH---HHHHHHhHHhHhh----eeecCChHHHHh--------HHHHHHHHHhcCH
Confidence 455555556666677887776 554 3566666665432 133 2222233 3338999999999
Q ss_pred CCCCC--C-C-CChhhHHHHHHHHhccccccCchhhHhhHHHHHHh-cCCCCCcccchhhhhhcHHHHHHHHHHHhhccC
Q 003723 497 PPPPA--P-P-VPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTL-LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQ 571 (800)
Q Consensus 497 ~~~~~--~-~-~~~~~i~~i~~~~~s~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~ 571 (800)
+++.+ + | ..+.-++.+...+++.+..+. ....+...+-++ .|.+.- .++-+.+|+.+++.||+.
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds--~a~~VG~lV~tLit~a~~e-------l~~n~d~IL~Avisrmq~-- 761 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDS--AAAFVGPLVLTLITHASSE-------LGPNLDQILRAVISRLQQ-- 761 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCCccchh--HHHHHhHHHHHHHHHHHHH-------hchhHHHHHHHHHHHHHH--
Confidence 88876 1 2 224567777778887776442 222333333333 333221 233388899999999984
Q ss_pred CCCcchhHHHHHHHHHhhccChHHHHHHHHhcC-c-------chHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHH
Q 003723 572 SKPSSLWKPVVLAISSCYLCYPAVVEGILKKDE-D-------GGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKV 643 (800)
Q Consensus 572 ~~~~~~~~~~l~vi~~~~~y~p~~~l~~L~~~~-~-------~~f~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sL 643 (800)
..+.++...++.|++...+-+++.++++|.+.. . -+++.|.+.. .-|.+.|++|+.+.++|++
T Consensus 762 ae~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srq---------hl~~g~ye~kv~i~alc~a 832 (1005)
T KOG2274|consen 762 AETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQ---------HLYFGEYEGKVSIKALCKA 832 (1005)
T ss_pred hhhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhh---------hhhhhhhhchhhHHHHHHH
Confidence 456677888999999999999999999999943 2 2569999987 8899999999999999999
Q ss_pred Hhhh
Q 003723 644 VERL 647 (800)
Q Consensus 644 l~~~ 647 (800)
|++.
T Consensus 833 l~~~ 836 (1005)
T KOG2274|consen 833 LQHL 836 (1005)
T ss_pred HHhh
Confidence 9865
No 7
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9e-23 Score=231.11 Aligned_cols=490 Identities=14% Similarity=0.134 Sum_probs=320.7
Q ss_pred chHHHHHHHHhhccccCChhhHhhHhhCHHHHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 003723 51 PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCS 130 (800)
Q Consensus 51 p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~ 130 (800)
+-+..||...|--++.+|++|.|.|.+||++|+..+.-. .| -|+.|.+|..+...+
T Consensus 369 ~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~------dw---ey~lRPCaE~L~~~l--------------- 424 (978)
T KOG1993|consen 369 NRITNLCDLLVTHYFLLTEEELEEWTQDPEGWVLEQSGG------DW---EYNLRPCAEKLYKDL--------------- 424 (978)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcChHHhhhhcccc------cc---eeccchhHHHHHHHH---------------
Confidence 346678888888899999999999999999999987653 23 489999999999997
Q ss_pred cccccccccccccccccccchhhHhHHHHH---hcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 003723 131 SVSSKRKKGEKSKRNSMRSTMGELLVLPFL---SRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVR 207 (800)
Q Consensus 131 ~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L---~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~ 207 (800)
...+.. .+.|.+ ..++ ++...+. .+.+....-.|||++.++|--+..+.. .-+| ..+|.
T Consensus 425 --F~~ysq-----------llvP~~-l~~i~~a~~~~~pt--~~~~l~a~L~KDAiYaa~g~~a~~l~~-~~dF-~~Wl~ 486 (978)
T KOG1993|consen 425 --FDAYSQ-----------LLVPPV-LDMIYSAQELQSPT--VTEDLTALLLKDAIYAAFGLAAYELSN-ILDF-DKWLQ 486 (978)
T ss_pred --HHHHHH-----------hhhHHH-HHHHHHHHhcCCCC--ccchHHHHHHHHHHHHHHHHHHHHHHh-cCCH-HHHHH
Confidence 333322 455543 3444 2222221 123567789999999999977766654 3455 66999
Q ss_pred HhhhhcccCC-CCCcchHHHHHHHHHHhhcc-CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC---
Q 003723 208 SRVLPLYSVS-VCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--- 282 (800)
Q Consensus 208 ~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~-l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~--- 282 (800)
+..+|+++.+ ....++|.|..|++|+|.+. .+.+....+|.+.++.|++.+ ++|||+.||.+++..+++-
T Consensus 487 ~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~-----D~vV~Ltt~~tlkl~vDD~nF~ 561 (978)
T KOG1993|consen 487 EALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQN-----DLVVRLTTARTLKLVVDDWNFS 561 (978)
T ss_pred HhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccc-----cceeehHHHHHHHHhhhhccCC
Confidence 9999999942 34569999999999999997 678888999999999999886 6999999999999999863
Q ss_pred --CCCccHHHHHHHHHHhhcccccchHH---HHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 003723 283 --YMPPEWYPLLQVIVGRIGYEDEENSI---LFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 357 (800)
Q Consensus 283 --~l~p~l~~ll~~Ll~~l~~e~~e~e~---l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~ 357 (800)
.+.|+++.+...+++++..-. |.|+ +..+|..+|++-++.|+|++..+++.|-..| +
T Consensus 562 ~dsFlp~lenlf~~lfkll~~~~-e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LW-e---------------- 623 (978)
T KOG1993|consen 562 EDSFLPYLENLFVLLFKLLKAVE-ECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLW-E---------------- 623 (978)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-h----------------
Confidence 688999888888888554332 4444 7789999999999999999999999876554 1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcccchhhhhhhHHHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhc
Q 003723 358 FAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVS 437 (800)
Q Consensus 358 f~~la~~~~~~~~~~~d~~~d~~~~~~~~~~~~a~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~ 437 (800)
.+. ++ ..-..|++.|+..++++ ....+.. +...++|+++...
T Consensus 624 ------------~s~--------~e---~lLr~alL~~L~~lV~a------------lg~qS~~---~~~fL~pVIel~~ 665 (978)
T KOG1993|consen 624 ------------ESE--------EE---PLLRCALLATLRNLVNA------------LGAQSFE---FYPFLYPVIELST 665 (978)
T ss_pred ------------hhc--------cC---cHHHHHHHHHHHHHHHH------------hccCCcc---chHHHHHHHHHhc
Confidence 111 11 12233478888888843 3222222 3457899999987
Q ss_pred chh----HHHHhhHHHHHHHHHHHHH-----hhHHHHHhh--cccHHhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCCh
Q 003723 438 ERN----VIEELKLSELLLVWADLIG-----DWHAWEETE--DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPP 506 (800)
Q Consensus 438 ~~~----~~l~~~v~ef~~~~~~ll~-----~W~~~~~~~--~~~~~dy~~e~~~~~~~~~L~Nfi~~g~~~~~~~~~~~ 506 (800)
|++ ++|..|-.++|...++-.. ...+++-+- -+...+.+.-.+. .++.||.-+.+.|+++ |-
T Consensus 666 D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t~l~-----Ii~sYilLd~~~fl~~--y~ 738 (978)
T KOG1993|consen 666 DPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPTVLM-----IISSYILLDNTVFLND--YA 738 (978)
T ss_pred CCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHhhccHHHHHH--HH
Confidence 774 4554443344332222111 111111110 0111222323332 4778887776666654 55
Q ss_pred hhHHHHHHHHhccccccCchhhHhhHHHHHHhcCCCCCcccchhhhhhcHHHHHHHHHHHhhccCCCCcchhHHHHHHHH
Q 003723 507 QSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAIS 586 (800)
Q Consensus 507 ~~i~~i~~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~~~~~~~~~~~l~vi~ 586 (800)
..+++.+..++.+-..+ + .-.+|..++.+-...+.-+. -...+++|.++..+.. +.+-....-..+.|++
T Consensus 739 ~~i~k~~~~~l~dvr~e--g-l~avLkiveili~t~~il~~--~~~~~~L~~lf~~I~~-----~~~yP~~~~~yl~vva 808 (978)
T KOG1993|consen 739 FGIFKKLNDLLDDVRNE--G-LQAVLKIVEILIKTNPILGS--LLFSPLLSRLFLSIAE-----NDKYPYVMGEYLLVVA 808 (978)
T ss_pred HHHHHHHHHHHHHhhHH--H-HHHHHHHHHHHHhhhHHHHh--hhcchhhHHHHHHHHh-----CCCCchhHHHHHHHHH
Confidence 55666555444222111 1 22333333333121110000 0011224444333311 2334455566889999
Q ss_pred HhhccChHHHHHHHHhcCc------chHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHHhhh-hcCCCchhhHHH
Q 003723 587 SCYLCYPAVVEGILKKDED------GGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL-LGLGNPGSSLLQ 659 (800)
Q Consensus 587 ~~~~y~p~~~l~~L~~~~~------~~f~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sLl~~~-p~l~~~~~~l~~ 659 (800)
...+.||+....+++..+. ..+..|+... ++....-+||+.++|++||+... |.+......|+.
T Consensus 809 Ri~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~---------~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~n 879 (978)
T KOG1993|consen 809 RISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLF---------DHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMN 879 (978)
T ss_pred HHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHc---------ccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHH
Confidence 9999999999999988773 5779999988 88888899999999999999753 322223445555
Q ss_pred HHHHHHHHHH
Q 003723 660 DCYASLMEAA 669 (800)
Q Consensus 660 ~~~~~L~~a~ 669 (800)
-.++.|-+.+
T Consensus 880 l~~e~L~eV~ 889 (978)
T KOG1993|consen 880 LWFEVLSEVM 889 (978)
T ss_pred HHHHHHHHHh
Confidence 4466666554
No 8
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.83 E-value=4.9e-18 Score=196.42 Aligned_cols=515 Identities=15% Similarity=0.145 Sum_probs=299.8
Q ss_pred hHHHHHHHHHhhcccccCcccCHHHHHHHHHHHHHHhc--cCcccccccc----hHHHHHHHHhhccccCChhhHhhHhh
Q 003723 4 IMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLE--TGPGWRLVSP----HFSVLLDKAIFPALVLNEKDISEWEE 77 (800)
Q Consensus 4 il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~--~~~~~~ll~p----~l~~Ll~~vIfP~l~~~e~D~Elwe~ 77 (800)
+++.+++++.. . . ..+.-+.++...+.++..+++ .+.+...+.. -+.++++.++.|+++++++|+|+|++
T Consensus 283 fv~~vw~~ltt--i-t-~~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~d 358 (947)
T COG5657 283 FVEIVWNLLTT--I-T-RPYIRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWED 358 (947)
T ss_pred HHHHHHHHHHh--h-c-CccccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCccccccccc
Confidence 56677888877 2 3 478889999999999999999 6677776654 58889999999999999999999999
Q ss_pred CHHHHHHHcCCCchhhhccccccc-cchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhH
Q 003723 78 DADEYIRKNFPSELEEISGWREDL-FTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLV 156 (800)
Q Consensus 78 DP~EYIr~~~d~~~~~~~g~~ed~-~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i 156 (800)
||.||||.... +|+ +..|..+.+.++.+=++|| .. ..+ .+
T Consensus 359 dp~eyire~s~----------~dye~~vr~~~~~~l~~~f~~~~-----------------~i----------~~~--~~ 399 (947)
T COG5657 359 DPLEYIREQSK----------TDYEVNVRPCIENELKDLFDVFG-----------------RI----------AVG--HE 399 (947)
T ss_pred CHHHHHHhhcc----------ccchhhhhHHHHHHHHHHHHHHh-----------------hH----------hHH--HH
Confidence 99999996544 333 3458888888877611111 11 111 24
Q ss_pred HHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCC--CCCcchHHHHHHHHHHh
Q 003723 157 LPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVS--VCLPYLVASANWILGEL 234 (800)
Q Consensus 157 ~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~--s~~p~LrarA~~~l~~f 234 (800)
..++.++...|+ .....+++++++...|.-...+.. .-++ ..|+.+...|++.+. ..|+.+++|...++..+
T Consensus 400 ~~~ie~~~t~P~----~~d~~~~~~a~~a~~g~g~~av~~-~~~~-v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~ 473 (947)
T COG5657 400 LTVIESEATTPN----ILDEARQLFAAYASFGLGVEAVNR-MVDF-VKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTF 473 (947)
T ss_pred HHHHHHHhcCch----HHHHHHHHHHHHHHhhhHHHHHHH-HHHH-HHHHHHhcCccccCcccCceeEEehhccchheec
Confidence 444554433221 234566667666666622222211 1122 568999999999841 24556666666666666
Q ss_pred hccCCcch--HHHHHHH--HHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-CCCccHHHHHHHHHHhhcccc--cchH
Q 003723 235 ASCLPEDI--SADVYSS--LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIVGRIGYED--EENS 307 (800)
Q Consensus 235 ~~~l~~~~--l~~v~~~--ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-~l~p~l~~ll~~Ll~~l~~e~--~e~e 307 (800)
+..++... ..+++.. .+..+.+-..+ +--+-||=.+..++..+.-.. ...+-..+++-.+++.+.... .+++
T Consensus 474 r~~l~~~~~~~~~fl~~~~F~~yt~~~id~-~~lLT~~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~ 552 (947)
T COG5657 474 RNQLDSSELSESKFLASQFFVNYTTACIDA-VVLLTTREAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEERE 552 (947)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHH
Confidence 66543322 2222211 22222221100 001222222222222221111 222334444444445333222 4899
Q ss_pred HHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhh
Q 003723 308 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWES 387 (800)
Q Consensus 308 ~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~d~~~d~~~~~~~~~ 387 (800)
.+++++++++..-++.++|.+.++++.|.+.+....++|.+| ++.|+.|+.+.+++...+..-
T Consensus 553 ~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p--~~~h~~fe~I~al~~~~~~~~--------------- 615 (947)
T COG5657 553 FLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNP--QFAHYTFEDIGALVFLKSGMC--------------- 615 (947)
T ss_pred HHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccH--HHHHHHHHHHHHHHHhhhccc---------------
Confidence 999999999999999999999999999999999988888875 999999999987775331110
Q ss_pred hhhHHHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhcchhHHHHhhHHHHHHHHHHHHHhhH-----
Q 003723 388 GQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWH----- 462 (800)
Q Consensus 388 ~~~a~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~~~~~~l~~~v~ef~~~~~~ll~~W~----- 462 (800)
=.|+.+++ .+ +.|.+..+ +..++.||+.+++++++-..
T Consensus 616 -----~~~ip~l~------------~~--------------l~p~~~~l------~~ed~~El~~~~lq~~s~l~e~f~~ 658 (947)
T COG5657 616 -----EITIPTLV------------LA--------------LVPEFPVL------LSEDATELWSYVLQLLSILPEHFSG 658 (947)
T ss_pred -----ccchHHHH------------Hh--------------hCccchhh------hhhhHHHHHHHHHHHHhhcchhhcC
Confidence 12333333 11 22332223 55556677777777663210
Q ss_pred -HHHHhhc-ccHHhhHHHHhhhhhhh-----hhhhhhcccCCCCCCCCCChhhHHHHHHHHhccccccCchhhHhhHHHH
Q 003723 463 -AWEETED-LSVFDCIKEIVNLHSKY-----ELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCV 535 (800)
Q Consensus 463 -~~~~~~~-~~~~dy~~e~~~~~~~~-----~L~Nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~~~~~~~~~~~~~ 535 (800)
.++...+ .....--+++.|..++. -++|++..++.-|.+ ...+.++.+++..+.....+ +.....+.-+
T Consensus 659 ~~lp~v~~~l~q~~~~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~--s~~~~vL~i~~~ll~~e~~~--~~~f~~~~~v 734 (947)
T COG5657 659 DVLPSVVKILRQPSLATELLPTKLEILKSYRLLDNPILTTGYIFKS--SGFQPVLGILQYLLGSEPHD--ALCFLNLTVV 734 (947)
T ss_pred CcCchHHHHHhcccCchHHHHHHHHHHHHHHHHHhhhhcccccccc--cchhhhHHHHHHHHhcchHH--HHHHhhHHHH
Confidence 0000000 00000012333322222 489999988888876 34667888888777666533 3334444434
Q ss_pred HHh--c-CCCCCcccchhhhhhcHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHh-----hccChHHHHHHHHhcCcch
Q 003723 536 HTL--L-HVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSC-----YLCYPAVVEGILKKDEDGG 607 (800)
Q Consensus 536 ~~l--~-~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~~~~~~~~~~~l~vi~~~-----~~y~p~~~l~~L~~~~~~~ 607 (800)
+.+ . ...++ +..|.-.+++|++. +++..+..-++-++.-- +-.+++..+...++.+...
T Consensus 735 ~~l~~~~i~~~~-----------v~~i~~lll~rl~n--s~~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~ 801 (947)
T COG5657 735 ETLYLENIYEPY-----------VNLIFVLLLSRLKN--SKTERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTKNIL 801 (947)
T ss_pred HHhHHHHHHhhc-----------HHHHHHHHHHHhhc--ccchHHHHHhheeeEEechhhccccCChHHHHHHHHHHHHH
Confidence 444 1 34455 88899999999974 44444433333222211 1134566666665444433
Q ss_pred H-HHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHHh
Q 003723 608 F-ALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE 645 (800)
Q Consensus 608 f-~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sLl~ 645 (800)
| ..|..-+. +.++ .--..|||+.++|+.+++.
T Consensus 802 i~~l~g~~Il-----~~~~-i~~~~drKi~~ig~snllr 834 (947)
T COG5657 802 IVQLYGNWIL-----GFDE-IHDSKDRKIHLIGLSNLLR 834 (947)
T ss_pred HHHHHhceee-----ccch-hccHHHHHHHHHhHHhhhh
Confidence 3 33433331 2334 6677899999999999994
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.7e-13 Score=163.25 Aligned_cols=276 Identities=18% Similarity=0.181 Sum_probs=196.3
Q ss_pred chhHHHHHHHH-HhhcccccCcccCHHHHHHHHHHHHHHhccCccc-ccccchHHHHHHHHhhccccCChhhH-hhHhhC
Q 003723 2 PDIMNSVLQIV-KYSANISKLDFLQERIISLAFDVISHVLETGPGW-RLVSPHFSVLLDKAIFPALVLNEKDI-SEWEED 78 (800)
Q Consensus 2 p~il~~~l~~i-~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~-~ll~p~l~~Ll~~vIfP~l~~~e~D~-Elwe~D 78 (800)
|++++-++..| +-++-+.+..-+.+.+.+.+++||..+++..+.. |...+...+|+-.+ + -++++.+. +.|.+.
T Consensus 238 pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~-l--~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 238 PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVL-L--AMMTEEEDDDEWSNE 314 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHH-H--HhcCCcccchhhccc
Confidence 67777777744 3355567788899999999999999999985542 33344444444322 2 33444332 444331
Q ss_pred HHHHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHH
Q 003723 79 ADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLP 158 (800)
Q Consensus 79 P~EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~ 158 (800)
++.| .+|..||.++|...|..| |++-.+|. .+.+ +.+
T Consensus 315 ------d~~d---------ed~~~~~~~~A~~~lDrl----------------A~~L~g~~----------v~p~--~~~ 351 (1075)
T KOG2171|consen 315 ------DDLD---------EDDEETPYRAAEQALDRL----------------ALHLGGKQ----------VLPP--LFE 351 (1075)
T ss_pred ------cccc---------cccccCcHHHHHHHHHHH----------------HhcCChhh----------ehHH--HHH
Confidence 1222 255788999999999998 45544454 4443 344
Q ss_pred HHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccC
Q 003723 159 FLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL 238 (800)
Q Consensus 159 ~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l 238 (800)
.+.++.. +.+|+.+.|+|+++|.+++-..+.-.+. -+=+.++|+|.++ .|||.+|..||..+|+++..+
T Consensus 352 ~l~~~l~--------S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~--DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 352 ALEAMLQ--------STEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLN--DPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHhc--------CCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhh
Confidence 4444332 2489999999999999997654422222 2246778999999 899999999999999999987
Q ss_pred Ccch----HHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC---CCCccHHHHHHHHHHhhcc-cc-cchHHH
Q 003723 239 PEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGRIGY-ED-EENSIL 309 (800)
Q Consensus 239 ~~~~----l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---~l~p~l~~ll~~Ll~~l~~-e~-~e~e~l 309 (800)
.++. ...+.++++..|.++. ...|+.+||.|+-+|.+.. .+.||++++|++++..|.+ .. .--+.+
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld~~~-----~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLDSTQ-----NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhcccC-----chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 6654 3445556677776665 5899999999999998753 7999999999966654533 22 234558
Q ss_pred HHHHHHHHHhhhhhhcchHHHHHHHHHHHH
Q 003723 310 FELLSSVVGAANENVADHIPYIVSSLVAAI 339 (800)
Q Consensus 310 ~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f 339 (800)
+.+|.++.+..++.+.||...++.+|...+
T Consensus 496 vtaIasvA~AA~~~F~pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKFIPYFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHHHH
Confidence 899999999999999999999999987775
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.5e-13 Score=152.61 Aligned_cols=292 Identities=17% Similarity=0.203 Sum_probs=205.5
Q ss_pred ccCHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHhhccccCChhhHhhHhh-CHHHHHHH----------------
Q 003723 23 FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEE-DADEYIRK---------------- 85 (800)
Q Consensus 23 ~ls~~~~~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~-DP~EYIr~---------------- 85 (800)
=....+.--+.+|.....+++-....++||+..|+- +.+..|.+++.|+-+-++ +-++.+-+
T Consensus 267 d~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliP-vLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~ 345 (885)
T KOG2023|consen 267 DVDENVALEACEFWLALAEQPICKEVLQPYLDKLIP-VLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHG 345 (885)
T ss_pred CcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-HHHccCccccccHHHhcCccccccCCchhhhccchhhhchhcc
Confidence 345678888999999999999888899999999995 557899999999988872 22222211
Q ss_pred ------cCCCchhhhccccccc---cchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhH
Q 003723 86 ------NFPSELEEISGWREDL---FTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLV 156 (800)
Q Consensus 86 ------~~d~~~~~~~g~~ed~---~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i 156 (800)
+.|.+.||.+ .+|. .+-|.++.-.|..|+. -.++. .+. + +
T Consensus 346 ~~~~~~~eDdddDe~D--DdD~~~dWNLRkCSAAaLDVLan-----------------vf~~e----------lL~-~-l 394 (885)
T KOG2023|consen 346 NGEDADDEDDDDDEDD--DDDAFSDWNLRKCSAAALDVLAN-----------------VFGDE----------LLP-I-L 394 (885)
T ss_pred Cccccccccccccccc--cccccccccHhhccHHHHHHHHH-----------------hhHHH----------HHH-H-H
Confidence 0010001100 0122 2466655555555522 22232 342 2 5
Q ss_pred HHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhc
Q 003723 157 LPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS 236 (800)
Q Consensus 157 ~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~ 236 (800)
.++|.+... .+.|+.||+...++|++|+-..+---++. +-+.-|.++.+. +..|.+|.-.||.+|+|++
T Consensus 395 ~PlLk~~L~--------~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~--DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 395 LPLLKEHLS--------SEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLD--DKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHHcC--------cchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhc--cCccceeeeeeeeHhhhhh
Confidence 666665432 35899999999999999998764212221 135566677777 7899999999999999999
Q ss_pred c----CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC--CCCccHHHHHHHHHHhhcccc-cchHHH
Q 003723 237 C----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYED-EENSIL 309 (800)
Q Consensus 237 ~----l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~--~l~p~l~~ll~~Ll~~l~~e~-~e~e~l 309 (800)
. -+.+.+..+++++++++.|.+ --|+=.||.|+..|.++- .+.||+.++++.|+.+++.-. +..=.|
T Consensus 464 wv~~~~~~~~f~pvL~~ll~~llD~N------K~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlIL 537 (885)
T KOG2023|consen 464 WVVQDSRDEYFKPVLEGLLRRLLDSN------KKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLIL 537 (885)
T ss_pred hHhcCChHhhhHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehH
Confidence 6 234678999999999999998 899999999999998863 799999999999998776432 223446
Q ss_pred HHHHHHHHHhhhhhhcc--hHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhh
Q 003723 310 FELLSSVVGAANENVAD--HIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 368 (800)
Q Consensus 310 ~~~L~~iV~~~~e~l~p--~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~ 368 (800)
..++.++.+..+..+-- |..-|++-|++-|..+-.+-.+-|| +||||.+++.+.
T Consensus 538 YDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP-----LLEClSsia~AL 593 (885)
T KOG2023|consen 538 YDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFP-----LLECLSSIASAL 593 (885)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHH-----HHHHHHHHHHHH
Confidence 68888888887777643 7788999999998666544433333 478888777655
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5.5e-05 Score=88.00 Aligned_cols=186 Identities=18% Similarity=0.242 Sum_probs=128.4
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhH
Q 003723 99 EDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQK 178 (800)
Q Consensus 99 ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k 178 (800)
+|..||-.||..-|.-++. .++ .. ++. .|.+++.+.-.. .+||
T Consensus 337 ~DdWnp~kAAg~CL~l~A~----------------~~~-D~----------Iv~--~Vl~Fiee~i~~--------pdwr 379 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQ----------------CVG-DD----------IVP--HVLPFIEENIQN--------PDWR 379 (859)
T ss_pred cccCcHHHHHHHHHHHHHH----------------Hhc-cc----------chh--hhHHHHHHhcCC--------cchh
Confidence 5668999999998887621 122 22 454 366777654433 3899
Q ss_pred HHHHHHHHHHHHHHHHhhhc-chhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc-----CCcchHHHHHHHHHH
Q 003723 179 DYFGVLMAYGGLQEFLREQK-SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-----LPEDISADVYSSLLK 252 (800)
Q Consensus 179 ~kdgaL~~vg~La~~l~~~~-~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-----l~~~~l~~v~~~ll~ 252 (800)
.+|++.+++|++=+.-...+ ++++.+- ...++-... .+.-+.|-.+.|.+|+.++. .+.+.+...++.++.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qa-lp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQA-LPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhh-hHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 99999999999765422211 2333222 223333344 57778888899999999996 456788888888999
Q ss_pred hhccCCCCCCCCccchhhHHHHHHHhhhcC-----------CCCccHHHHHHHHHHhhcccc--cch---HHHHHHHHHH
Q 003723 253 ALQMLDKGDTSCYPVRASAAGAIVGLLEND-----------YMPPEWYPLLQVIVGRIGYED--EEN---SILFELLSSV 316 (800)
Q Consensus 253 ~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-----------~l~p~l~~ll~~Ll~~l~~e~--~e~---e~l~~~L~~i 316 (800)
.|+|. +.|-.-+|.|+.+|.++- ...|+...++..|++ ..+.. .++ -...++|+++
T Consensus 457 gL~De-------Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~-~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 457 GLNDE-------PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK-VTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HhhhC-------chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh-hccccccchhhHHHHHHHHHHHH
Confidence 98764 889999999999997541 355889999999998 55443 222 2356899999
Q ss_pred HHhhhhhhcchHHHHH
Q 003723 317 VGAANENVADHIPYIV 332 (800)
Q Consensus 317 V~~~~e~l~p~a~~l~ 332 (800)
|..-.+.+.|....++
T Consensus 529 Ik~st~~vy~~v~~~~ 544 (859)
T KOG1241|consen 529 IKNSTDDVYPMVQKLT 544 (859)
T ss_pred HHcCcHHHHHHHHHHH
Confidence 9998888877543333
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.40 E-value=0.0014 Score=74.41 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=114.1
Q ss_pred cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchh
Q 003723 98 REDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQ 177 (800)
Q Consensus 98 ~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~ 177 (800)
++|..+|..||..-|.-. +...+.. ++.|+ ..++.+.. .+++|
T Consensus 338 ~~DdWn~smaA~sCLqlf-----------------aq~~gd~----------i~~pV--l~FvEqni--------~~~~w 380 (858)
T COG5215 338 YGDDWNPSMAASSCLQLF-----------------AQLKGDK----------IMRPV--LGFVEQNI--------RSESW 380 (858)
T ss_pred cccccchhhhHHHHHHHH-----------------HHHhhhH----------hHHHH--HHHHHHhc--------cCchh
Confidence 356778999998888775 2222222 56654 33443322 23589
Q ss_pred HHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc----C-CcchHHHHHHHHH
Q 003723 178 KDYFGVLMAYGGLQEFLREQ-KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC----L-PEDISADVYSSLL 251 (800)
Q Consensus 178 k~kdgaL~~vg~La~~l~~~-~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~----l-~~~~l~~v~~~ll 251 (800)
+.+|++.+++|++-+-=.+. -.+++.+ ..-.+..+.. .+.-|.+.++.|++|+.++. + |...+.-..++.+
T Consensus 381 ~nreaavmAfGSvm~gp~~~~lT~~V~q-alp~i~n~m~--D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~l 457 (858)
T COG5215 381 ANREAAVMAFGSVMHGPCEDCLTKIVPQ-ALPGIENEMS--DSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASL 457 (858)
T ss_pred hhHHHHHHHhhhhhcCccHHHHHhhHHh-hhHHHHHhcc--cceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHH
Confidence 99999999999864321100 0011111 1111222233 57889999999999999996 3 3455666666666
Q ss_pred HhhccCCCCCCCCccchhhHHHHHHHhhhcC---------CCCccHHHHHHHHHHhhcccc-cch---HHHHHHHHHHHH
Q 003723 252 KALQMLDKGDTSCYPVRASAAGAIVGLLEND---------YMPPEWYPLLQVIVGRIGYED-EEN---SILFELLSSVVG 318 (800)
Q Consensus 252 ~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---------~l~p~l~~ll~~Ll~~l~~e~-~e~---e~l~~~L~~iV~ 318 (800)
..|.|- +-+-+--+.+..+|+++- .+.|+-+.++..|++ -.+.. .|+ -.+..+|.++|.
T Consensus 458 iGl~D~-------p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~-~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 458 IGLMDC-------PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVK-GTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred hhhhcc-------chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHHh
Confidence 666542 455556667888887751 567777888888877 43333 222 236688999999
Q ss_pred hhhhhhcchHH
Q 003723 319 AANENVADHIP 329 (800)
Q Consensus 319 ~~~e~l~p~a~ 329 (800)
...+.+.|...
T Consensus 530 ~~~d~V~~~~a 540 (858)
T COG5215 530 ICPDAVSDILA 540 (858)
T ss_pred hcchhHHHHHH
Confidence 88888777433
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.036 Score=67.15 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhhcchhH------HHHHHHhhhhcccC---------CCCCcchH-------------HHHHHHHH
Q 003723 181 FGVLMAYGGLQEFLREQKSEFT------ANLVRSRVLPLYSV---------SVCLPYLV-------------ASANWILG 232 (800)
Q Consensus 181 dgaL~~vg~La~~l~~~~~~~~------e~fl~~~VlP~l~~---------~s~~p~Lr-------------arA~~~l~ 232 (800)
+-+|+-+.+.-....+++..+. ..++..+|||.+.- ..|+-|+| ..|..++.
T Consensus 318 ~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~ 397 (1010)
T KOG1991|consen 318 DRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLT 397 (1010)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHH
Confidence 4455555554444443332222 56899999999862 25666776 44566666
Q ss_pred HhhccCCcchHHHHHHHHHHhhc
Q 003723 233 ELASCLPEDISADVYSSLLKALQ 255 (800)
Q Consensus 233 ~f~~~l~~~~l~~v~~~ll~~L~ 255 (800)
...+...++++..+++.++.-|+
T Consensus 398 ~~~~KR~ke~l~k~l~F~~~Il~ 420 (1010)
T KOG1991|consen 398 TLVSKRGKETLPKILSFIVDILT 420 (1010)
T ss_pred HHHHhcchhhhhhHHHHHHHHHH
Confidence 66665668899999999998887
No 14
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.22 Score=59.89 Aligned_cols=238 Identities=14% Similarity=0.195 Sum_probs=156.7
Q ss_pred ccchHHHHHHHHhhcccc-CChhhHhhHhhCHHHHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCC
Q 003723 49 VSPHFSVLLDKAIFPALV-LNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPS 127 (800)
Q Consensus 49 l~p~l~~Ll~~vIfP~l~-~~e~D~Elwe~DP~EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~ 127 (800)
.+|-+..|++..+ |-+. .+++..-.|+.|- .+.|.+-|+.-.|++...
T Consensus 403 ~~qIy~qlvei~l-~K~~~Ps~e~~~~W~S~s------------------~e~F~~YR~diSD~~~~~------------ 451 (982)
T KOG2022|consen 403 SQQIYAQLVEILL-KKLALPSKEIWLSWSSDS------------------REQFESYRKDISDLLMSS------------ 451 (982)
T ss_pred HHHHHHHHHHHHH-HHhcCCCHHHhccCCcch------------------HHHHHHHHHHHHHHHHHH------------
Confidence 3477778887664 4444 4455556676662 344666788888888773
Q ss_pred CCCcccccc-cccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 003723 128 NCSSVSSKR-KKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLV 206 (800)
Q Consensus 128 ~~~~a~~kr-~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl 206 (800)
..- +.. .+. +....|.+...+.++ +...|.+.|++++-+-++++.+....++.....+
T Consensus 452 ------Y~ilgd~----------ll~--~L~~~l~q~~aa~d~---~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~ 510 (982)
T KOG2022|consen 452 ------YSILGDG----------LLD--FLIDTLEQALAAGDE---DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLF 510 (982)
T ss_pred ------HHHHhHH----------HHH--HHHHHHHHhhhccCC---CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 221 111 222 255666665444322 3457999999999999999988653333322222
Q ss_pred HHhhhhcccCCCCCcchHHHHHHHHHHhhcc--CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC--
Q 003723 207 RSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-- 282 (800)
Q Consensus 207 ~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-- 282 (800)
. +.+..+.+.+.|=|-..+-..+|.++.. -.|..+.-.++.+++.|..++ --.+|...|+.+++..
T Consensus 511 ~--~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--------~s~q~i~tl~tlC~~C~~ 580 (982)
T KOG2022|consen 511 E--TSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--------ESEQAISTLKTLCETCPE 580 (982)
T ss_pred H--hccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--------HHHHHHHHHHHHHHhhhh
Confidence 2 2233332234666777788999999887 357788889999999997554 3467888899999975
Q ss_pred CCCccHHHHHHHHHHhhcc--cc-cchHHHHHHHHHHHHhhhh-hhcchHHHHHHHHHHHHHHhcCCCCC
Q 003723 283 YMPPEWYPLLQVIVGRIGY--ED-EENSILFELLSSVVGAANE-NVADHIPYIVSSLVAAISKHMHPSSE 348 (800)
Q Consensus 283 ~l~p~l~~ll~~Ll~~l~~--e~-~e~e~l~~~L~~iV~~~~e-~l~p~a~~l~~~L~~~f~~~~~~~~~ 348 (800)
.+.||+.+++..+=..++. -. .+...+++.+.-++..-.- ++..|...|++.+.++.-..+.+..+
T Consensus 581 ~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~ 650 (982)
T KOG2022|consen 581 SLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGID 650 (982)
T ss_pred hCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 7999999998765553332 22 3566688887777777664 45558888888888887766554443
No 15
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.026 Score=69.33 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=86.6
Q ss_pred HHHhhhhcccCCCCCcchHHHHHHHHHHhhccCC---cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc-
Q 003723 206 VRSRVLPLYSVSVCLPYLVASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN- 281 (800)
Q Consensus 206 l~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~- 281 (800)
+.++++...+ |+++=+|-.|..+++.+....+ ...+..+...+.+||++++ .|||++|++|+..|+..
T Consensus 119 ll~~L~q~~~--S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s------~~vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 119 LLQFLFQSTK--SPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPS------SPVRVAAVRALGAFAEYL 190 (1075)
T ss_pred HHHHHHHHhc--CCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCc------chHHHHHHHHHHHHHHHh
Confidence 4555556666 8999999999999998888644 3456688899999999987 66999999999999652
Q ss_pred --C-----CCCccHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Q 003723 282 --D-----YMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAA 338 (800)
Q Consensus 282 --~-----~l~p~l~~ll~~Ll~~l~~e~~e-~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~ 338 (800)
+ .+++.+|.++..+-..+.....+ ...+..++-.+++....-+.|+..++++-...+
T Consensus 191 ~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~I 255 (1075)
T KOG2171|consen 191 ENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEI 255 (1075)
T ss_pred ccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 1 34444555555544433222211 244667777777777777888777766654433
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.16 E-value=0.69 Score=56.22 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=95.6
Q ss_pred HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 203 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 203 e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
..-+.+..+|-++ ++.--+|-|||..+|..+...+...+..+.+.+++.|..+.. .--+|++ ..+|..+++..
T Consensus 172 h~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q----~~~~rt~-Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 172 HLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ----MSATRTY-IQCLAAICRQA 244 (1233)
T ss_pred HHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc----hHHHHHH-HHHHHHHHHHh
Confidence 3345666778888 788899999999999999999999999999999999976531 2334433 33445554431
Q ss_pred -----CCCccHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHH
Q 003723 283 -----YMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAI 339 (800)
Q Consensus 283 -----~l~p~l~~ll~~Ll~~l~~e~~e-~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f 339 (800)
.=.+.+.|++..+.+.+..+..| -++..++++.++.+...+|.||.+++.+.+.+-+
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yi 307 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYI 307 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHh
Confidence 34466777888888644222212 3567799999999999999999999999877664
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.037 Score=64.33 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcchHHHHHHHHHHhhcc-CC--cchHHHHHHHH
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASC-LP--EDISADVYSSL 250 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~-l~--~~~l~~v~~~l 250 (800)
.|..+-..=.+++-|+.+..+ =+.-+++|.++. .+..=+.|-.+.-.+|..+.- +. -..+..+++.+
T Consensus 368 dWNLRkCSAAaLDVLanvf~~--------elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l 439 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGD--------ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFL 439 (885)
T ss_pred cccHhhccHHHHHHHHHhhHH--------HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHH
Confidence 376665555566666666543 233456666653 144457788888889998883 43 35677899999
Q ss_pred HHhhccCCCCCCCCccchhhHHHHHHHhhhc---CCCCccHHHHHHHHHHhhcccc-cchHHHHHHHHHHHHhhhhhhcc
Q 003723 251 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD 326 (800)
Q Consensus 251 l~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~---~~l~p~l~~ll~~Ll~~l~~e~-~e~e~l~~~L~~iV~~~~e~l~p 326 (800)
+.+|.|.. .+||.-.|-.|.+|-+. +.=..++.|+|+.|++.+...- .=-|.--.+..++.|...+++.|
T Consensus 440 ~~~L~DKk------plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp 513 (885)
T KOG2023|consen 440 LSLLDDKK------PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP 513 (885)
T ss_pred HHHhccCc------cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH
Confidence 99999887 99999999999999542 1111345555665555443321 01244567778888999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCC
Q 003723 327 HIPYIVSSLVAAISKHMHPSS 347 (800)
Q Consensus 327 ~a~~l~~~L~~~f~~~~~~~~ 347 (800)
|...|.++|+-+|.|+-++|.
T Consensus 514 ~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 514 YLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred HHHHHHHHHHHHHHHHhhcce
Confidence 999999999999999988775
No 18
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=1.1 Score=53.35 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhccc-CCCCCcchHHHHHHHHHHhhccC----Ccc----hHHHH
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYS-VSVCLPYLVASANWILGELASCL----PED----ISADV 246 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~-~~s~~p~LrarA~~~l~~f~~~l----~~~----~l~~v 246 (800)
.|-+ |++=..+|.+++.+...-.+ +..+. -+++-+. +-..+|++-..+||.+--|+... +.. .....
T Consensus 420 l~Vk-dTaAwtlgrI~d~l~e~~~n--~~~l~-~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~ 495 (859)
T KOG1241|consen 420 LWVK-DTAAWTLGRIADFLPEAIIN--QELLQ-SKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPF 495 (859)
T ss_pred hhhc-chHHHHHHHHHhhchhhccc--Hhhhh-HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchh
Confidence 4444 99999999999998642111 11222 2222222 11478999999999999998741 111 22357
Q ss_pred HHHHHHhhcc-CCCCCCCCccchhhHHHHHHHhhhcC--CCCccH----HHHHHHHHHhhcccc---------cch-HHH
Q 003723 247 YSSLLKALQM-LDKGDTSCYPVRASAAGAIVGLLEND--YMPPEW----YPLLQVIVGRIGYED---------EEN-SIL 309 (800)
Q Consensus 247 ~~~ll~~L~~-~~~~~~~~lpVrv~AA~AL~~~l~~~--~l~p~l----~~ll~~Ll~~l~~e~---------~e~-e~l 309 (800)
|+.+++.|.. .+..+-..--.|+.|=.||-.++++. ...|.+ .-++.+|=+.|+.+. .|. +.|
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~L 575 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLL 575 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 7777777632 11111124678999999999999874 222322 222333333232111 111 225
Q ss_pred HHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHh
Q 003723 310 FELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 367 (800)
Q Consensus 310 ~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~ 367 (800)
..+|+.|+.+.+..+.+++.+|+..+.++|-+ ++.. -+-++.|=+++.++-.
T Consensus 576 c~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s--~~s~----~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 576 CNTLQSIIRKVGSDIREVSDQIMGLFLRIFES--KRSA----VVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHHcC--Cccc----cchHHHHHHHHHHHHH
Confidence 58888899998888888888888887777654 1111 1234456666655543
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.09 E-value=4 Score=47.44 Aligned_cols=177 Identities=14% Similarity=0.169 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC----CCCCcchHHHHHHHHHHhhccCC------cchHHHHHHH
Q 003723 180 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV----SVCLPYLVASANWILGELASCLP------EDISADVYSS 249 (800)
Q Consensus 180 kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~----~s~~p~LrarA~~~l~~f~~~l~------~~~l~~v~~~ 249 (800)
|+.+-.++|++++.+-..-++ ..|+.|+.+. --.+|+....+||..-.|..+++ +..+.+.|.+
T Consensus 425 k~ttAwc~g~iad~va~~i~p------~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a 498 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISP------CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA 498 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCc------cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH
Confidence 444445599999886532111 1133333221 13689999999999888888754 3346778888
Q ss_pred HHHhhccCCCCCCCCccchhhHHHHHHHhhhcC--CCCccHHHHHHHHHHhhc-----------ccc----cc-hHHHHH
Q 003723 250 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIG-----------YED----EE-NSILFE 311 (800)
Q Consensus 250 ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~--~l~p~l~~ll~~Ll~~l~-----------~e~----~e-~e~l~~ 311 (800)
+++.|..-..-..++.-.|+++-.||..++... .+.|.+..+..-.++.|. .++ .| -.-+..
T Consensus 499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~ 578 (858)
T COG5215 499 ILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIG 578 (858)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 887773210000124778999999999998743 455544444432222221 111 01 112457
Q ss_pred HHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhh
Q 003723 312 LLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 368 (800)
Q Consensus 312 ~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~ 368 (800)
+|..+|.+++..|.|.+.+|+..+.+++-+- ++ .-.-.++|.++.+|..+.
T Consensus 579 vl~aiir~~~~~ie~v~D~lm~Lf~r~les~--~~----t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 579 VLEAIIRTRRRDIEDVEDQLMELFIRILEST--KP----TTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHhcc--CC----chhhhHHHHHHHHHHHHH
Confidence 8889999999999998888888766654332 11 123445788888877644
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.96 E-value=2.4 Score=49.84 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=65.7
Q ss_pred HhhhhcccCCCCCcchHHHHHHHHHHhhccCCc--c--hHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-
Q 003723 208 SRVLPLYSVSVCLPYLVASANWILGELASCLPE--D--ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND- 282 (800)
Q Consensus 208 ~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~--~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~- 282 (800)
.++..-++ +++|.+|.-||+.+++....... + .-..+++.++.||.+++ .-|.-.|+.+|..+..++
T Consensus 80 ~~L~~gL~--h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d------~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 80 PFLQRGLT--HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD------LSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc------HHHHHHHHHHHHHHhCCch
Confidence 34444455 78999999999999998664211 1 11368999999999987 899999999999998764
Q ss_pred ----CCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhh
Q 003723 283 ----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN 321 (800)
Q Consensus 283 ----~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~ 321 (800)
.+.+....-|..++. +.. ...-.++++-+|..++
T Consensus 152 ~~~~l~~~~~~~~L~~l~~---~~~--~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMS---QSS--DIVRCRVYELLVEIAS 189 (503)
T ss_pred hHHHHhCcchHHHHHHHHh---ccC--HHHHHHHHHHHHHHHh
Confidence 234433333333332 211 1223466666666543
No 21
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.94 E-value=0.075 Score=52.93 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=100.8
Q ss_pred HHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcch----HHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhh
Q 003723 204 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 204 ~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~----l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
.-+.+++.-.++ ++.++=|-.++.+++.....-+.+. ...-++.+++.|+.++ ..+++-.|+.+|..++
T Consensus 24 ~~l~~ri~~LL~--s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-----~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 24 HKLVTRINSLLQ--SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-----PPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHhC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHH
Confidence 356667788888 7778888888888887766533333 3567788888998876 5889999999999997
Q ss_pred hc----C-----CCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Q 003723 280 EN----D-----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAA 338 (800)
Q Consensus 280 ~~----~-----~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~ 338 (800)
.. + ...|.++.+++.+++++.... ..+....+|.+++..|..-+.||+.++-+.+...
T Consensus 97 ~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 97 DLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 63 1 478999999999999555333 5677999999999999999999999988877654
No 22
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.79 E-value=0.0063 Score=48.69 Aligned_cols=52 Identities=37% Similarity=0.472 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHhhccCC---cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHh
Q 003723 221 PYLVASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 278 (800)
Q Consensus 221 p~LrarA~~~l~~f~~~l~---~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~ 278 (800)
|-+|..|+|.+|.++...+ .....++++.++.+|.|++ ..||..|+.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~------~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD------DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS------HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHhcC
Confidence 4589999999999876532 3467899999999999887 69999999999864
No 23
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.66 E-value=7.8 Score=47.42 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=56.5
Q ss_pred CCCcchHHHHHHHHHHhhccC-CcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-----CCCccHHHH
Q 003723 218 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-----YMPPEWYPL 291 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l-~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-----~l~p~l~~l 291 (800)
+..|++|.+||....-|++.. =...+..++.++++.....+ --|-+--.-||...+..+ .+...+-|+
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s------~evl~llmE~Ls~vv~~dpef~as~~skI~P~ 575 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSS------DEVLVLLMEALSSVVKLDPEFAASMESKICPL 575 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHccccc------HHHHHHHHHHHHHHhccChhhhhhhhcchhHH
Confidence 567899999998887787541 13345567777766665443 112222223344444432 355556666
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHhh---hhhhcchHHHHHHHHHHHH
Q 003723 292 LQVIVGRIGYEDEENSILFELLSSVVGAA---NENVADHIPYIVSSLVAAI 339 (800)
Q Consensus 292 l~~Ll~~l~~e~~e~e~l~~~L~~iV~~~---~e~l~p~a~~l~~~L~~~f 339 (800)
+-.++...++ + ..+....+.+++.- .+.-.|+.-.+.+.|+++.
T Consensus 576 ~i~lF~k~s~-D---P~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil 622 (1005)
T KOG2274|consen 576 TINLFLKYSE-D---PQVASLAQDLFEELLQIAANYGPMQERLIPSLISVL 622 (1005)
T ss_pred HHHHHHHhcC-C---chHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 6666552332 1 13333333333222 2233455555555555543
No 24
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.54 Score=54.34 Aligned_cols=233 Identities=14% Similarity=0.145 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHhcc------CcccccccchHHHHHHHHhhccccCChhhHhhHhhCHHHHHHHcCCCchhhhcccccc
Q 003723 27 RIISLAFDVISHVLET------GPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 100 (800)
Q Consensus 27 ~~~~~~l~fL~~~v~~------~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~g~~ed 100 (800)
+++...|.|=...-+. .....+++|++..++. .+++-.++.. |.+.--++ .++
T Consensus 306 evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs-~l~~h~qlp~-~~~~l~Ee-------------------~~~ 364 (559)
T KOG2081|consen 306 EVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVS-LLKRHVQLPP-DQFDLPEE-------------------ESE 364 (559)
T ss_pred hhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHH-HHHHHccCCC-ccccCccc-------------------hhH
Confidence 7778888776554332 1223467899999995 5577888877 43322222 234
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHH
Q 003723 101 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180 (800)
Q Consensus 101 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~k 180 (800)
+.--|....++|+.. +.--+.. +.+. .+...+.+ + ...|..-
T Consensus 365 f~~fR~~v~dvl~Dv-----------------~~iigs~---------e~lk--~~~~~l~e---~-------~~~We~~ 406 (559)
T KOG2081|consen 365 FFEFRLKVGDVLKDV-----------------AFIIGSD---------ECLK--QMYIRLKE---N-------NASWEEV 406 (559)
T ss_pred HHHHHHHHHHHHHHH-----------------HHHhCcH---------HHHH--HHHHHHcc---C-------CCchHHH
Confidence 555688899999885 1111111 0222 12222322 1 2379999
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc--CCcchHHHHHHHHHHhhccCC
Q 003723 181 FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLD 258 (800)
Q Consensus 181 dgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~v~~~ll~~L~~~~ 258 (800)
||+|+.+.+++..+.-...+.....++... +-+-+.| +|+.+|-++|.|.++ ..++.+.-+.+-+.+.++..
T Consensus 407 EAaLF~l~~~~~~~~~~e~~i~pevl~~i~----nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~- 480 (559)
T KOG2081|consen 407 EAALFILRAVAKNVSPEENTIMPEVLKLIC----NLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLK- 480 (559)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHh----CCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhc-
Confidence 999999999887654322333333333321 1111233 999999999999998 56888888888888888754
Q ss_pred CCCCCCccchhhHHHHHHHhhhcC--CCCccHHHHHHH---HHHhhcccccchHHHHHHHHHHHHhhhhh-hcchHHHHH
Q 003723 259 KGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQV---IVGRIGYEDEENSILFELLSSVVGAANEN-VADHIPYIV 332 (800)
Q Consensus 259 ~~~~~~lpVrv~AA~AL~~~l~~~--~l~p~l~~ll~~---Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~-l~p~a~~l~ 332 (800)
+....||.|..+.+... .+.+.++.+++. +..-..++ |...+.+-+..++.+-... +.+...+++
T Consensus 481 -------~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~--e~a~l~~~~s~i~~~lp~~k~~~~~~el~ 551 (559)
T KOG2081|consen 481 -------RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINE--EAACLLQGISLIISNLPAHKAKIALEELC 551 (559)
T ss_pred -------chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCHhhhhHHHHHHh
Confidence 36677788887776532 444444444443 33322332 3444667777777765554 333333443
Q ss_pred H
Q 003723 333 S 333 (800)
Q Consensus 333 ~ 333 (800)
.
T Consensus 552 ~ 552 (559)
T KOG2081|consen 552 E 552 (559)
T ss_pred h
Confidence 3
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=94.97 E-value=4.6 Score=49.61 Aligned_cols=137 Identities=16% Similarity=0.118 Sum_probs=85.8
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-C
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-Y 283 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-~ 283 (800)
+..+.+.-+++ ++.|++|+-|+.+++.. ..+++...+...+.++|.|++ .-||=.||.|+..+.+.. .
T Consensus 105 LaINtl~KDl~--d~Np~IRaLALRtLs~I---r~~~i~e~l~~~lkk~L~D~~------pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 105 LAVNTFLQDTT--NSSPVVRALAVRTMMCI---RVSSVLEYTLEPLRRAVADPD------PYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHhhCcc
Confidence 55667777888 79999999999988776 447888899999999999887 899999999999998743 2
Q ss_pred C-C-ccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 003723 284 M-P-PEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAAL 361 (800)
Q Consensus 284 l-~-p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~l 361 (800)
+ . ..+.+-+..+ |. +. +...+..++..+.+.-... |-...+....+..++..+.+ .++|.|+ ++++.|
T Consensus 174 lv~~~~~~~~L~~L---L~-D~-dp~Vv~nAl~aL~eI~~~~--~~~l~l~~~~~~~Ll~~L~e-~~EW~Qi--~IL~lL 243 (746)
T PTZ00429 174 LFYQQDFKKDLVEL---LN-DN-NPVVASNAAAIVCEVNDYG--SEKIESSNEWVNRLVYHLPE-CNEWGQL--YILELL 243 (746)
T ss_pred cccccchHHHHHHH---hc-CC-CccHHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHHhhc-CChHHHH--HHHHHH
Confidence 2 1 1233333333 32 32 4455556655544442221 11112333333333333333 2458776 566666
Q ss_pred H
Q 003723 362 A 362 (800)
Q Consensus 362 a 362 (800)
+
T Consensus 244 ~ 244 (746)
T PTZ00429 244 A 244 (746)
T ss_pred H
Confidence 4
No 26
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=94.67 E-value=0.047 Score=67.49 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=13.9
Q ss_pred HHHHHHHhhccChHHHHHHHHhc
Q 003723 581 VVLAISSCYLCYPAVVEGILKKD 603 (800)
Q Consensus 581 ~l~vi~~~~~y~p~~~l~~L~~~ 603 (800)
++.+++.-+|.+|..+..+|+..
T Consensus 537 L~~~~~lq~~~~~~~~~~~l~dl 559 (784)
T PF04931_consen 537 LLSLVLLQLYNGPEEAVDVLDDL 559 (784)
T ss_pred HHHHHHHHHhcCChHHHHHHHHH
Confidence 33444444666788887777543
No 27
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=94.63 E-value=0.021 Score=63.61 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=3.8
Q ss_pred ccccc-CCc
Q 003723 745 HDIEL-GSL 752 (800)
Q Consensus 745 eE~~l-spL 752 (800)
.|-.| ||-
T Consensus 120 sd~~~WtP~ 128 (458)
T PF10446_consen 120 SDYEFWTPG 128 (458)
T ss_pred ccceeeccc
Confidence 34445 653
No 28
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.46 E-value=3.7 Score=49.16 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=122.9
Q ss_pred cccCHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHhhccccCChhhHhhHhhCHHHHHHHcCCCchhhhcccccc-
Q 003723 22 DFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED- 100 (800)
Q Consensus 22 ~~ls~~~~~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~g~~ed- 100 (800)
.-.|-.++-.+.+||+..=+-+....-.+-|+..++. +||-.||+.+.. .|.+| -.. +| .|+
T Consensus 349 ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~ill-ai~kqicydemy--~nddn--------~tg--~E----eEa~ 411 (980)
T KOG2021|consen 349 DDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILL-AIFKQICYDEMY--FNDDN--------VTG--DE----EEAF 411 (980)
T ss_pred hhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHH-HHHHHHhccHHh--hcccC--------CCC--ch----HHHH
Confidence 3455566667777777664444444445667888885 557788886542 23333 011 01 122
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHH
Q 003723 101 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180 (800)
Q Consensus 101 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~k 180 (800)
+...|.---.|+.++ +.--..- ++. .|.+-|+...... ..+.|...
T Consensus 412 f~e~RkkLk~fqdti-----------------~~idpsl----------~l~--~Ir~slS~al~ns-----~e~swqev 457 (980)
T KOG2021|consen 412 FEEVRKKLKNFQDTI-----------------VVIDPSL----------FLN--NIRQSLSAALMNS-----KEESWQEV 457 (980)
T ss_pred HHHHHHHHHHHHHHH-----------------HhcCHHH----------HHH--HHHHHHHHHHhcC-----CcchHHHH
Confidence 445666666667665 1110010 111 2455554422222 23579999
Q ss_pred HHHHHHHHHHHHHHhhhc----ch-hH-HHHHHHhhhhcccC----CCCCcchHHHHHHHHHHhhccCCcchHHHHHHHH
Q 003723 181 FGVLMAYGGLQEFLREQK----SE-FT-ANLVRSRVLPLYSV----SVCLPYLVASANWILGELASCLPEDISADVYSSL 250 (800)
Q Consensus 181 dgaL~~vg~La~~l~~~~----~~-~~-e~fl~~~VlP~l~~----~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~l 250 (800)
|.|++.+-.+++.++... ++ .. .+.+. ...|.+.. ..+|+-++--=...+-+|.+..+.+. +.++.+
T Consensus 458 E~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~-~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~v 534 (980)
T KOG2021|consen 458 ELAIYLLYNLGECLKNNYFGLNSGDISTSQVLF-LNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLV 534 (980)
T ss_pred HHHHHHHHHHhhccccccccccCccccHHHHHH-HHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHH
Confidence 999999999999886421 11 11 11111 12222211 25677666666677777777643221 255555
Q ss_pred HHhhccCCCCCCCCccchhhHHHHHHHhhhc--CCCCccHHHHHHHHHHhh
Q 003723 251 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRI 299 (800)
Q Consensus 251 l~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~l 299 (800)
+.++-++-.=--..--||.-|+--..+|++. ..+.|++..+++++-.+|
T Consensus 535 L~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 535 LNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554332100001277999999999999874 367788888877666645
No 29
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.38 E-value=0.64 Score=48.27 Aligned_cols=177 Identities=17% Similarity=0.155 Sum_probs=99.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhh--hcchhHHHHHH---HhhhhcccCCCCCcchHHHHHHHHHHhhccCCc---chHHHH
Q 003723 175 RIQKDYFGVLMAYGGLQEFLRE--QKSEFTANLVR---SRVLPLYSVSVCLPYLVASANWILGELASCLPE---DISADV 246 (800)
Q Consensus 175 ~~~k~kdgaL~~vg~La~~l~~--~~~~~~e~fl~---~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~---~~l~~v 246 (800)
.+|..+..+|..+-++...-.. ....+ -..+. .-+...+. +...-+...||.+++.++..+.. .....+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~--d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDF-VECLRQLLDAIIKQLS--DLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHH-HHHHH---HHHHH-S---HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHH-HHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5799988888887776654311 01112 22233 33444444 44556888999999999987442 346788
Q ss_pred HHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccH-HHHHHHHHHhhcccc-cchHHHHHHHHHHHHhhh---
Q 003723 247 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-YPLLQVIVGRIGYED-EENSILFELLSSVVGAAN--- 321 (800)
Q Consensus 247 ~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l-~~ll~~Ll~~l~~e~-~e~e~l~~~L~~iV~~~~--- 321 (800)
++.+++.+.+++ -.||-.|..||..++++....+.+ .+++... +.+.- .=-......|..++..++
T Consensus 96 l~~Ll~~~~~~~------~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~---~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 96 LPPLLKKLGDSK------KFIREAANNALDAIIESCSYSPKILLEILSQG---LKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHGGG---------HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHH---TT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHcccc------HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 899999999887 899999999999999864322333 3333332 22211 012345677888888888
Q ss_pred hhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhh
Q 003723 322 ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 368 (800)
Q Consensus 322 e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~ 368 (800)
..+... .....++..+.+.+.+.. |.+=..+.+++..+-+++
T Consensus 167 ~~l~~~--~~~~~l~~~l~~~l~D~~---~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 167 SVLQKS--AFLKQLVKALVKLLSDAD---PEVREAARECLWALYSHF 208 (228)
T ss_dssp GGG--H--HHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH
T ss_pred hhhccc--chHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHC
Confidence 334332 234566666777777654 355556666666665555
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.31 E-value=0.49 Score=55.38 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhc
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 255 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~ 255 (800)
+...|=-++.++..+... .++ .--+..+.+..+++ ++.|++|+.|..+++.++ ++++...+++.+.++|.
T Consensus 55 ~~~~Krl~yl~l~~~~~~----~~~-~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHE----DPE-LLILIINSLQKDLN--SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SHHHHHHHHHHHHHHTTT----SHH-HHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc----chh-HHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhc
Confidence 456565555555543322 222 23467788888898 899999999999999986 68999999999999999
Q ss_pred cCCCCCCCCccchhhHHHHHHHhhhcC-CCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHH
Q 003723 256 MLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVG 318 (800)
Q Consensus 256 ~~~~~~~~~lpVrv~AA~AL~~~l~~~-~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~ 318 (800)
+++ .-||-.|+.|+..+.+.. ...+.. +++.+.+++ .+. +...+..++..+.+
T Consensus 125 ~~~------~~VRk~A~~~l~~i~~~~p~~~~~~--~~~~l~~lL-~d~-~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 125 DPS------PYVRKKAALALLKIYRKDPDLVEDE--LIPKLKQLL-SDK-DPSVVSAALSLLSE 178 (526)
T ss_dssp SSS------HHHHHHHHHHHHHHHHHCHCCHHGG--HHHHHHHHT-THS-SHHHHHHHHHHHHH
T ss_pred CCc------hHHHHHHHHHHHHHhccCHHHHHHH--HHHHHhhhc-cCC-cchhHHHHHHHHHH
Confidence 987 899999999999998753 322221 345555534 232 33444444444333
No 31
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.16 E-value=3.2 Score=45.25 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=59.8
Q ss_pred HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 203 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 203 e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
+.++.+.|.|-++ ++.+-+|.+|..++|-|+- ++++...+.+..+.++++..+ .+||+.|..||--++.
T Consensus 25 ~~ll~~lI~P~v~--~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~------~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 25 ESLLDSLILPAVQ--SSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDD------EEVKITALKALFDLLL 93 (298)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHH
Confidence 5799999999999 7889999999999999965 677888888999999985543 9999999999988754
No 32
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.05 E-value=0.23 Score=44.98 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcc---hHHHHHHHHHHhhc
Q 003723 179 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQ 255 (800)
Q Consensus 179 ~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~---~l~~v~~~ll~~L~ 255 (800)
.|.|+|..+.+++-.+.+.-..|.+ .+..-|+..|. .+.+-+|.-||..+...++....+ .+.+++.++.+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD--DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3779999999988877653223322 45555666666 788999999999999999874443 46889999999999
Q ss_pred cCCCCCCCCccchhhHHHHHHHhh
Q 003723 256 MLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 256 ~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
|++ .-||-.|. -|-+++
T Consensus 79 D~d------~~Vr~~a~-~Ld~ll 95 (97)
T PF12755_consen 79 DPD------ENVRSAAE-LLDRLL 95 (97)
T ss_pred CCc------hhHHHHHH-HHHHHh
Confidence 987 77887664 344444
No 33
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.96 E-value=0.14 Score=46.44 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCC---cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc--CCCCccHHHHHHHHHHhhc
Q 003723 226 SANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIG 300 (800)
Q Consensus 226 rA~~~l~~f~~~l~---~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~l~ 300 (800)
-+.+.++..+-.++ .+.+..+++.+++|+.|++ .-||.+|+.||-++.+. +.+-|+...++..|.+++.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d------~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQD------SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555544433 4678899999999999997 99999999999999875 3667789999999999554
Q ss_pred cc
Q 003723 301 YE 302 (800)
Q Consensus 301 ~e 302 (800)
..
T Consensus 79 D~ 80 (97)
T PF12755_consen 79 DP 80 (97)
T ss_pred CC
Confidence 43
No 34
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=5.7 Score=46.67 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHh
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKA 253 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~ 253 (800)
.||.|-|++-++|++++.-.+ .-.+....|+|.+.. ...+|-+|..+..++-+|.+.....-...+++-++.|
T Consensus 267 kWrtK~aslellg~m~~~ap~-----qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPK-----QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchH-----HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 699999999999998876543 223556667788764 2679999999999999999986555589999999999
Q ss_pred hccCCCCCCCCccchhhHHHHHHHhhhcC---CCCcc----HHHHHHHHHHhhcccccchHH-HHHHHHHHHHh--hhhh
Q 003723 254 LQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPE----WYPLLQVIVGRIGYEDEENSI-LFELLSSVVGA--ANEN 323 (800)
Q Consensus 254 L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---~l~p~----l~~ll~~Ll~~l~~e~~e~e~-l~~~L~~iV~~--~~e~ 323 (800)
+.+|.. ++ -.|+..+..-. ++.+- +.|++++=+. -+. . +... ....+..++.- -...
T Consensus 342 l~dp~~--------~~--~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~-eRs-t-~~kr~t~~IidNm~~LveDp~~ 408 (569)
T KOG1242|consen 342 LADPSC--------YT--PECLDSLGATTFVAEVDAPSLALMVPILKRGLA-ERS-T-SIKRKTAIIIDNMCKLVEDPKD 408 (569)
T ss_pred hcCccc--------ch--HHHHHhhcceeeeeeecchhHHHHHHHHHHHHh-hcc-c-hhhhhHHHHHHHHHHhhcCHHH
Confidence 999861 12 23455554432 33332 2333332222 111 1 1111 12222222222 2556
Q ss_pred hcchHHHHHHHHHHHH
Q 003723 324 VADHIPYIVSSLVAAI 339 (800)
Q Consensus 324 l~p~a~~l~~~L~~~f 339 (800)
++||.+.|.+.|-..+
T Consensus 409 lapfl~~Llp~lk~~~ 424 (569)
T KOG1242|consen 409 LAPFLPSLLPGLKENL 424 (569)
T ss_pred HhhhHHHHhhHHHHHh
Confidence 8999999999876665
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.76 E-value=0.15 Score=46.47 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCc--c-hH-HHHHHHHH
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--D-IS-ADVYSSLL 251 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~-~l-~~v~~~ll 251 (800)
+|..+.+++.+++.++..-......+...-....+++.++ ++.+-+|..|+|+++.++...++ . .. ..+++.++
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence 4899999999999988652111111111122233444455 56789999999999999875322 1 11 23678888
Q ss_pred HhhccCCCCCCCCccchhhHHHHHHHhh
Q 003723 252 KALQMLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 252 ~~L~~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
++|.+.+ .-||-.|+.+|.+++
T Consensus 98 ~~l~~~~------~~~~~~a~~~l~~l~ 119 (120)
T cd00020 98 NLLDSSN------EDIQKNATGALSNLA 119 (120)
T ss_pred HHHhcCC------HHHHHHHHHHHHHhh
Confidence 8888776 789999999998875
No 36
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=8.5 Score=46.28 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=71.6
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc-CC
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DY 283 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~-~~ 283 (800)
++.+.+--+|+ .|+-|+|+....|+.++ ..++.+..+++.+..||.... .=||=.|..||-.+..+ ..
T Consensus 99 Lvcna~RkDLQ--HPNEyiRG~TLRFLckL---kE~ELlepl~p~IracleHrh------sYVRrNAilaifsIyk~~~~ 167 (948)
T KOG1058|consen 99 LVCNAYRKDLQ--HPNEYIRGSTLRFLCKL---KEPELLEPLMPSIRACLEHRH------SYVRRNAILAIFSIYKNFEH 167 (948)
T ss_pred HHHHHHhhhcc--CchHhhcchhhhhhhhc---CcHHHhhhhHHHHHHHHhCcc------hhhhhhhheeehhHHhhhhh
Confidence 45677778888 78899999999999777 458999999999999999986 77999999999999887 58
Q ss_pred CCccHHHHHHHHHH
Q 003723 284 MPPEWYPLLQVIVG 297 (800)
Q Consensus 284 l~p~l~~ll~~Ll~ 297 (800)
+-|..+.++...+.
T Consensus 168 L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 168 LIPDAPELIESFLL 181 (948)
T ss_pred hcCChHHHHHHHHH
Confidence 89999999988764
No 37
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.40 E-value=0.77 Score=46.17 Aligned_cols=93 Identities=22% Similarity=0.171 Sum_probs=67.2
Q ss_pred CcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhh
Q 003723 220 LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRI 299 (800)
Q Consensus 220 ~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l 299 (800)
+|-+|..|..++|-+.-.. +..+....+.+.++|.|++ ..||-.|..+|..++..+++++. +.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~------~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDED------PLVRKTALLVLSHLILEDMIKVK-GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHHH
Confidence 4778999999999887655 4677889999999999997 99999999999999998765543 34446666656
Q ss_pred cccccchHHHHHHHHHHHHhhhhh
Q 003723 300 GYEDEENSILFELLSSVVGAANEN 323 (800)
Q Consensus 300 ~~e~~e~e~l~~~L~~iV~~~~e~ 323 (800)
.+ +++.+...-..+...+...
T Consensus 73 ~D---~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VD---ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cC---CCHHHHHHHHHHHHHHHHh
Confidence 43 3444554444444433333
No 38
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.16 E-value=0.69 Score=56.00 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=85.8
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-C
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-Y 283 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-~ 283 (800)
...+.+.-+|+ ++.|++|+-|..+++..+. ++.+..+++.+.+|++++. .=||=.||.|+..+.+-+ .
T Consensus 92 LavNti~kDl~--d~N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~------ayVRk~Aalav~kly~ld~~ 160 (757)
T COG5096 92 LAVNTIQKDLQ--DPNEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPH------AYVRKTAALAVAKLYRLDKD 160 (757)
T ss_pred HHHHHHHhhcc--CCCHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCc------HHHHHHHHHHHHHHHhcCHh
Confidence 56778888899 8999999999999887744 7889999999999999997 789999999999998743 2
Q ss_pred CCccH--HHHHHHHHHhhcccccchHHHHHHHHHHHHhhhhhhcchHHHHHHHH
Q 003723 284 MPPEW--YPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSL 335 (800)
Q Consensus 284 l~p~l--~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L 335 (800)
+-+.. -.+++. +..+. +...+..++-.+.+...+...+|...++..+
T Consensus 161 l~~~~g~~~~l~~----l~~D~-dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i 209 (757)
T COG5096 161 LYHELGLIDILKE----LVADS-DPIVIANALASLAEIDPELAHGYSLEVILRI 209 (757)
T ss_pred hhhcccHHHHHHH----HhhCC-CchHHHHHHHHHHHhchhhhhhHHHHHHHHh
Confidence 22222 222333 33343 5666778888888888886666666555543
No 39
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.14 E-value=0.87 Score=40.87 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=55.9
Q ss_pred HHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCC-CCccHHHHHHHHHHhhcccccchHH--HHHHHHHHHHhhh
Q 003723 245 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPLLQVIVGRIGYEDEENSI--LFELLSSVVGAAN 321 (800)
Q Consensus 245 ~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~-l~p~l~~ll~~Ll~~l~~e~~e~e~--l~~~L~~iV~~~~ 321 (800)
+.|+.++..|.||. +|||..|-.-|+.+++... -...++.+++.++..|.+++ +-=+ .++.+..++..+.
T Consensus 3 ~~~~~al~~L~dp~------~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPL------PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCC------cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHCh
Confidence 46788888899987 9999999999999999765 55667888888888676654 2222 2366777777777
Q ss_pred hhhcc
Q 003723 322 ENVAD 326 (800)
Q Consensus 322 e~l~p 326 (800)
+.+.|
T Consensus 76 ~~vl~ 80 (92)
T PF10363_consen 76 DEVLP 80 (92)
T ss_pred HHHHH
Confidence 66554
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.93 E-value=0.92 Score=53.11 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHH-HHHHHHHhh
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISAD-VYSSLLKAL 254 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~-v~~~ll~~L 254 (800)
+...+-.||+.++++... .. .+-+...|...+. +++|++|..|+-.+.++... .++.... +++.+.++|
T Consensus 92 n~~~~~lAL~~l~~i~~~------~~-~~~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL 161 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIRTP------EM-AEPLIPDVIKLLS--DPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLL 161 (526)
T ss_dssp SHHHHHHHHHHHHHH-SH------HH-HHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHT
T ss_pred CHHHHHHHHhhhhhhccc------ch-hhHHHHHHHHHhc--CCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhc
Confidence 567788888888876622 11 2346667777788 78999999999999999775 5556555 799999999
Q ss_pred ccCCCCCCCCccchhhHHHHHHHh-hhcCCCCccHHHHHHHHHHhh
Q 003723 255 QMLDKGDTSCYPVRASAAGAIVGL-LENDYMPPEWYPLLQVIVGRI 299 (800)
Q Consensus 255 ~~~~~~~~~~lpVrv~AA~AL~~~-l~~~~l~p~l~~ll~~Ll~~l 299 (800)
.|++ ..|+..|+.++..+ ...+...+.+++++..|.+.+
T Consensus 162 ~d~~------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 162 SDKD------PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL 201 (526)
T ss_dssp THSS------HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH
T ss_pred cCCc------chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc
Confidence 8886 88999999999988 222222266777777777644
No 41
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.61 E-value=0.13 Score=61.38 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHhccCcccccccchHHHHHHHHhhccc----cCChhhHhhHhhCHHHHHHHcCCC---chhhhcccccc-ccchHHH
Q 003723 36 ISHVLETGPGWRLVSPHFSVLLDKAIFPAL----VLNEKDISEWEEDADEYIRKNFPS---ELEEISGWRED-LFTARKS 107 (800)
Q Consensus 36 L~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l----~~~e~D~Elwe~DP~EYIr~~~d~---~~~~~~g~~ed-~~S~R~a 107 (800)
+-.++..++.|+.+.|--. ++.+. |-.| |+.+-+.++= -..-|-++.+++ -++-+.|-++. --+.|.+
T Consensus 606 ~L~l~~~~~~w~~~spR~d-~~~~A-l~vL~i~t~iP~iq~~La--~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~ 681 (1516)
T KOG1832|consen 606 MLELCQTPPVWRYLSPRHD-LLQYA-LGVLHIVTSIPDIQKALA--HATLSNNRAYDGIAIILDAANGSNSIVDPEIIQP 681 (1516)
T ss_pred HHHHHhcCccccccCcchH-HHHHH-HhheeeeEecchHHHHHH--HHHhhcccccCceEEEeecccccccccCHHHHHH
Confidence 3344566788888866322 22222 2222 2223333332 234455555442 11111231111 1245788
Q ss_pred HHHHHHHHhhcCCCCCC
Q 003723 108 AINLLGVISVSKGPPMG 124 (800)
Q Consensus 108 A~~lL~~L~~~~~~~~~ 124 (800)
|.+.+... ..+||.-
T Consensus 682 AL~vIinc--Vc~pp~~ 696 (1516)
T KOG1832|consen 682 ALNVIINC--VCPPPTT 696 (1516)
T ss_pred HHhhhhee--ecCCCCc
Confidence 88887765 5566543
No 42
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.40 E-value=7.2 Score=39.13 Aligned_cols=150 Identities=12% Similarity=0.069 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCC
Q 003723 179 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLD 258 (800)
Q Consensus 179 ~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~ 258 (800)
.+-.++.++|-|+-+ -+...+++ ..++...|+ ++.|.+|..|+-+++++-..=---.-.+++..++.++.|++
T Consensus 4 vR~n~i~~l~DL~~r----~~~~ve~~-~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 4 VRNNAIIALGDLCIR----YPNLVEPY-LPNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHHh----CcHHHHhH-HHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 344455555544433 22333433 345567777 78999999999999998664111222456688889999987
Q ss_pred CCCCCCccchhhHHHHHHHhhhc--C-CCCccHHHHHHHHHHhhccc---ccchHHHHHHHHHHHHhhhhhhcchHHHHH
Q 003723 259 KGDTSCYPVRASAAGAIVGLLEN--D-YMPPEWYPLLQVIVGRIGYE---DEENSILFELLSSVVGAANENVADHIPYIV 332 (800)
Q Consensus 259 ~~~~~~lpVrv~AA~AL~~~l~~--~-~l~p~l~~ll~~Ll~~l~~e---~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~ 332 (800)
.-||-.|..++..+... + .+...+++++..|-..-..+ ....+.-...+..+++...+ -...-.|+
T Consensus 77 ------~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~ 148 (178)
T PF12717_consen 77 ------PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLV 148 (178)
T ss_pred ------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHH
Confidence 88999999999999875 2 34445555555443311111 10122233444444444442 12345777
Q ss_pred HHHHHHHHHhc
Q 003723 333 SSLVAAISKHM 343 (800)
Q Consensus 333 ~~L~~~f~~~~ 343 (800)
.+|++.|....
T Consensus 149 ~kl~~~~~~~~ 159 (178)
T PF12717_consen 149 EKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHc
Confidence 78877776654
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.03 E-value=0.24 Score=39.41 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHH
Q 003723 177 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGE 233 (800)
Q Consensus 177 ~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~ 233 (800)
|+.+.+|+.++|.++......-.++.. -+...+++.++ ++.+-+|..|||.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~--d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQ--DDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTT--SSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHc--CCCHHHHHHHHHHHhc
Confidence 788999999999866443321122222 23334456666 5667899999999986
No 44
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.93 E-value=0.13 Score=57.67 Aligned_cols=6 Identities=0% Similarity=0.064 Sum_probs=2.9
Q ss_pred chhhHH
Q 003723 754 EVDQLK 759 (800)
Q Consensus 754 ~v~~~~ 759 (800)
+|..|.
T Consensus 121 d~~~Wt 126 (458)
T PF10446_consen 121 DYEFWT 126 (458)
T ss_pred cceeec
Confidence 455553
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=89.97 E-value=1 Score=38.98 Aligned_cols=76 Identities=24% Similarity=0.158 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhc
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 255 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~ 255 (800)
+|..+..++.++|.+.+. . ....+...++ +++|.+|..|++.+|++.+ .++++.+.+.+.
T Consensus 13 ~~~vr~~a~~~L~~~~~~-------~----~~~~L~~~l~--d~~~~vr~~a~~aL~~i~~-------~~~~~~L~~~l~ 72 (88)
T PF13646_consen 13 DPQVRAEAARALGELGDP-------E----AIPALIELLK--DEDPMVRRAAARALGRIGD-------PEAIPALIKLLQ 72 (88)
T ss_dssp SHHHHHHHHHHHHCCTHH-------H----HHHHHHHHHT--SSSHHHHHHHHHHHHCCHH-------HHTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCH-------h----HHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHc
Confidence 678888899998843211 1 1223333456 7899999999999999853 457888888998
Q ss_pred cCCCCCCCCccchhhHHHHHH
Q 003723 256 MLDKGDTSCYPVRASAAGAIV 276 (800)
Q Consensus 256 ~~~~~~~~~lpVrv~AA~AL~ 276 (800)
+++ +..||-.|+.||.
T Consensus 73 ~~~-----~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 73 DDD-----DEVVREAAAEALG 88 (88)
T ss_dssp C-S-----SHHHHHHHHHHHH
T ss_pred CCC-----cHHHHHHHHhhcC
Confidence 765 4888999999874
No 46
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.63 E-value=0.41 Score=55.40 Aligned_cols=92 Identities=26% Similarity=0.290 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC---CCCCcchHHHHHHHHHHhhccCCc----chHHHHHHHHHH
Q 003723 180 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPE----DISADVYSSLLK 252 (800)
Q Consensus 180 kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~~f~~~l~~----~~l~~v~~~ll~ 252 (800)
.-.||+++|+++.--. ......+..-.+|.|.. .++...+|.-|||++|.....-.+ -+-..+++.+++
T Consensus 296 ~~PaLRaiGNIvtG~d----~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSD----EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred ccHHHhhccceeeccH----HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 4567888887543211 11122333334444432 245567999999999998774221 122367899999
Q ss_pred hhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 253 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 253 ~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
.|+..+ ...|-+||-||.++...
T Consensus 372 ~l~~~e------f~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 372 LLQTAE------FDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHhccc------hHHHHHHHHHHHhhccc
Confidence 998876 99999999999999764
No 47
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.85 E-value=5.5 Score=50.01 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcch---hHHHHHHHhhhhcccCCCCCcchHHHH----HHHHHHhhccCCcchHHHHHHH
Q 003723 177 QKDYFGVLMAYGGLQEFLREQKSE---FTANLVRSRVLPLYSVSVCLPYLVASA----NWILGELASCLPEDISADVYSS 249 (800)
Q Consensus 177 ~k~kdgaL~~vg~La~~l~~~~~~---~~e~fl~~~VlP~l~~~s~~p~LrarA----~~~l~~f~~~l~~~~l~~v~~~ 249 (800)
=+....+|+-+|+++..+..-..+ ..+.|+.... +-+. ...+.++++- -.++.+|.+.++.+.+.++++.
T Consensus 755 R~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Is-agl~--gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~ 831 (1176)
T KOG1248|consen 755 RRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIIS-AGLV--GDSTRVVASDIVAITHILQEFKNILDDETLEKLISM 831 (1176)
T ss_pred HhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH-hhhc--ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 456788899999766554432222 2244544332 2233 3445566552 2456677777999999999999
Q ss_pred HHHhhccCCCCCCCCccchhhHHHHHHHhhhc-C--CCCccHHHHHHHHHHhhcccc--cchHHHHHHHHHHHHhhhhh-
Q 003723 250 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-D--YMPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANEN- 323 (800)
Q Consensus 250 ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~-~--~l~p~l~~ll~~Ll~~l~~e~--~e~e~l~~~L~~iV~~~~e~- 323 (800)
+..+|.... .=|+-.|...|..++.. + .++|+++.||..++. +..+. ...-.+-..++++|.+|+-+
T Consensus 832 V~~~L~s~s------reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 832 VCLYLASNS------REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 999999876 77889999999999874 2 799999999999999 55443 12233557889999999865
Q ss_pred hcchHHHHHHHHHHHHHHh
Q 003723 324 VADHIPYIVSSLVAAISKH 342 (800)
Q Consensus 324 l~p~a~~l~~~L~~~f~~~ 342 (800)
+.+|.++.--.+...+.|.
T Consensus 905 Le~~~pee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 905 LESFLPEEDMKLLTNIRKR 923 (1176)
T ss_pred HHhhCHHHHHHHHHHHHHH
Confidence 8888876666655555443
No 48
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.71 E-value=0.44 Score=33.49 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.8
Q ss_pred HHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 246 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 246 v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
+++.++++++|++ .-||..|+.||..+.++
T Consensus 1 llp~l~~~l~D~~------~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPS------PEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SS------HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCC------HHHHHHHHHHHHHHHhh
Confidence 4788999999997 99999999999998764
No 49
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=88.22 E-value=0.49 Score=41.02 Aligned_cols=48 Identities=31% Similarity=0.299 Sum_probs=41.1
Q ss_pred CCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHh
Q 003723 218 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 278 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~ 278 (800)
++.+.+|..|++++|++.+ .++++.++..+.+++ ..||..|+.||..+
T Consensus 11 ~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGD-------PEAIPALIELLKDED------PMVRRAAARALGRI 58 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSS------HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 6889999999999996643 267888888998876 89999999999965
No 50
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.16 E-value=64 Score=38.37 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhh
Q 003723 220 LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRI 299 (800)
Q Consensus 220 ~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l 299 (800)
.+=.+.=|..++.+|-+.. |+...+++.+++.+..|++ ..||+.|.++|..++.+. +-++..+...|.++|
T Consensus 35 ~~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed------~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL 105 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDED------VQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLL 105 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SS------HHHHHHHHHHGGGG--T----T-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhccc------HHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHH
Confidence 3456777888888887755 5677889999999998886 999999999999999863 234555555666655
Q ss_pred cccc-cchHHHHHHHHHHHHhhhh
Q 003723 300 GYED-EENSILFELLSSVVGAANE 322 (800)
Q Consensus 300 ~~e~-~e~e~l~~~L~~iV~~~~e 322 (800)
..+. .|.+.+.++|..++.....
T Consensus 106 ~tdd~~E~~~v~~sL~~ll~~d~k 129 (556)
T PF05918_consen 106 QTDDPVELDAVKNSLMSLLKQDPK 129 (556)
T ss_dssp T---HHHHHHHHHHHHHHHHH-HH
T ss_pred hcccHHHHHHHHHHHHHHHhcCcH
Confidence 5554 5777777777766554443
No 51
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.73 E-value=0.23 Score=59.51 Aligned_cols=16 Identities=38% Similarity=0.655 Sum_probs=10.3
Q ss_pred chhhHHHHHHHhhhcC
Q 003723 267 VRASAAGAIVGLLEND 282 (800)
Q Consensus 267 Vrv~AA~AL~~~l~~~ 282 (800)
+|.-||.+|-.+-+++
T Consensus 760 IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 760 IRALACRVLLGLARDD 775 (1516)
T ss_pred HHHHHHHHHhccccCc
Confidence 5666777766666653
No 52
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=87.13 E-value=0.99 Score=56.02 Aligned_cols=18 Identities=22% Similarity=0.411 Sum_probs=8.8
Q ss_pred CCcchHHHHHHHHHHhhc
Q 003723 219 CLPYLVASANWILGELAS 236 (800)
Q Consensus 219 ~~p~LrarA~~~l~~f~~ 236 (800)
..+|||.-+.|++...-.
T Consensus 106 ~k~~l~e~~~~~l~~~l~ 123 (784)
T PF04931_consen 106 KKSWLRESCGWVLVQALK 123 (784)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 445555555555544433
No 53
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=1.2e+02 Score=39.86 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHH
Q 003723 309 LFELLSSVVGAANENVADHIPYIVSSLVAAISK 341 (800)
Q Consensus 309 l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~ 341 (800)
-..++..++..++.++.||.+.|+..|.+.+..
T Consensus 1151 si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1151 SIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 347888899999999999999999998888743
No 54
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.55 E-value=85 Score=38.08 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=80.8
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh-cC-
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE-ND- 282 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~-~~- 282 (800)
=|.+-|+-.++ +.-||+|-||.-++.+.--.. |+.+...|+-+...|.||+ +-|...|+.-|..+-+ ++
T Consensus 144 DLa~Dv~tLL~--sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpD------p~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 144 DLADDVFTLLN--SSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPD------PSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCC------chHHHHHHHHHHHHHhhCCc
Confidence 35566777787 789999999998876653333 5778899999999999998 8898888888888876 33
Q ss_pred -CCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCC
Q 003723 283 -YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHP 345 (800)
Q Consensus 283 -~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~ 345 (800)
|+ | +.|++=+|+.-.. -|=.|.++|. -| ..++|+-+.|..+|..-+..+++.
T Consensus 215 nyL-~-LAP~ffkllttSs----NNWmLIKiiK----LF-~aLtplEPRLgKKLieplt~li~s 267 (877)
T KOG1059|consen 215 NYL-Q-LAPLFYKLLVTSS----NNWVLIKLLK----LF-AALTPLEPRLGKKLIEPITELMES 267 (877)
T ss_pred ccc-c-ccHHHHHHHhccC----CCeehHHHHH----HH-hhccccCchhhhhhhhHHHHHHHh
Confidence 32 2 2233333322122 2222444433 33 346788788888887777776653
No 55
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.68 E-value=18 Score=38.78 Aligned_cols=142 Identities=14% Similarity=0.185 Sum_probs=94.3
Q ss_pred hcccCCCCCcchHHHHHHHHHHhhccCC-----cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCC-
Q 003723 212 PLYSVSVCLPYLVASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP- 285 (800)
Q Consensus 212 P~l~~~s~~p~LrarA~~~l~~f~~~l~-----~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~- 285 (800)
|.++ +..+..|+||..+++..-..++ ++...-+++...+.|.|. +.=..|..++..+++...+.
T Consensus 6 ~~Lt--sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--------~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 6 EYLT--SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--------ACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred hhhC--CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--------hhHHHHHHHHHHHHhCcCCCh
Confidence 4456 7889999999999887776654 445556667777777543 23344577888888765443
Q ss_pred ccHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 003723 286 PEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALA 362 (800)
Q Consensus 286 p~l~~ll~~Ll~~l~~e~---~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la 362 (800)
.....+++.+++.+.... ++--.+.+.+..+++++.+.+...+.+.+. .|.+.+..--+ |+..-..|+-+-
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~----~~i~~~~gEkD--PRnLl~~F~l~~ 149 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVY----GFIQLIDGEKD--PRNLLLSFKLLK 149 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHH----HHHHHhccCCC--HHHHHHHHHHHH
Confidence 346677777776343222 233346689999999999988655555554 44555555555 477777888887
Q ss_pred HHHHhhh
Q 003723 363 LMAQSWE 369 (800)
Q Consensus 363 ~~~~~~~ 369 (800)
.+.+.|.
T Consensus 150 ~i~~~~~ 156 (262)
T PF14500_consen 150 VILQEFD 156 (262)
T ss_pred HHHHhcc
Confidence 7777663
No 56
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.43 E-value=1.4 Score=39.98 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=50.9
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHHhhccCC---cchHH-HHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 209 RVLPLYSVSVCLPYLVASANWILGELASCLP---EDISA-DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 209 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~-~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
+++..+. ++.+.+|..|++.++.++...+ ..... .+++.+++.|.+++ ..||-.|+.||.++..+.
T Consensus 11 ~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED------EEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC------HHHHHHHHHHHHHHccCc
Confidence 3444455 5668999999999999987532 22233 77889999998876 899999999999998764
No 57
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.30 E-value=66 Score=39.17 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=56.2
Q ss_pred cchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-CCCccHHHHHHHHHHhh
Q 003723 221 PYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIVGRI 299 (800)
Q Consensus 221 p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-~l~p~l~~ll~~Ll~~l 299 (800)
+.|+.-...++.+-+. .++..-.+.++.+.+.|...+ .-|+.+||.+|.++..++ .+ ...-+.++.++
T Consensus 220 ~~LqlViVE~Irkv~~-~~p~~~~~~i~~i~~lL~sts------saV~fEaa~tlv~lS~~p~al----k~Aa~~~i~l~ 288 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCL-ANPAEKARYIRCIYNLLSSTS------SAVIFEAAGTLVTLSNDPTAL----KAAASTYIDLL 288 (948)
T ss_pred HHHHHHHHHHHHHHHh-cCHHHhhHHHHHHHHHHhcCC------chhhhhhcceEEEccCCHHHH----HHHHHHHHHHH
Confidence 4677666666666655 556777889999999999876 889999999998887654 33 33344455544
Q ss_pred cccccchHHHHHHHHHHHH
Q 003723 300 GYEDEENSILFELLSSVVG 318 (800)
Q Consensus 300 ~~e~~e~e~l~~~L~~iV~ 318 (800)
..+. +|..=.-++.++++
T Consensus 289 ~kes-dnnvklIvldrl~~ 306 (948)
T KOG1058|consen 289 VKES-DNNVKLIVLDRLSE 306 (948)
T ss_pred Hhcc-CcchhhhhHHHHHH
Confidence 4443 44443344444443
No 58
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=3.2 Score=49.92 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=76.5
Q ss_pred CCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-CCCccHHHHHHHHH
Q 003723 218 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIV 296 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-~l~p~l~~ll~~Ll 296 (800)
.|++.+|+-|+.+++-.+- +-...-++-++-+|..|+. .-||=.||+||..+-.-+ .-.+.+..++..||
T Consensus 119 DpN~LiRasALRvlSsIRv---p~IaPI~llAIk~~~~D~s------~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL 189 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRV---PMIAPIMLLAIKKAVTDPS------PYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL 189 (968)
T ss_pred CCcHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCc------HHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh
Confidence 6899999888877765433 4455567788888989987 889999999999997643 44456677777776
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH
Q 003723 297 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 366 (800)
Q Consensus 297 ~~l~~e~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~ 366 (800)
+ .. ..=.+-.+++.+=+.+.+.+ +|+..=-.-+.+++.+. +.|.|++ ++..|..-++
T Consensus 190 a----D~-splVvgsAv~AF~evCPerl-----dLIHknyrklC~ll~dv-deWgQvv--lI~mL~RYAR 246 (968)
T KOG1060|consen 190 A----DR-SPLVVGSAVMAFEEVCPERL-----DLIHKNYRKLCRLLPDV-DEWGQVV--LINMLTRYAR 246 (968)
T ss_pred c----CC-CCcchhHHHHHHHHhchhHH-----HHhhHHHHHHHhhccch-hhhhHHH--HHHHHHHHHH
Confidence 5 11 11112355555555555443 33332222222333322 3377765 4555554444
No 59
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.02 E-value=1e+02 Score=36.69 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc---CCCCccHHHHHHHHHHhhcccc-cchHHHHHHHHH
Q 003723 240 EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSS 315 (800)
Q Consensus 240 ~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~---~~l~p~l~~ll~~Ll~~l~~e~-~e~e~l~~~L~~ 315 (800)
+..+..+++.++.++.|.. .-||=.|..|.+.+++. ..++-.+++++..+... . .+.....+++..
T Consensus 211 EPyiv~~lp~il~~~~d~~------~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~----kWrtK~aslellg~ 280 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKI------NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA----KWRTKMASLELLGA 280 (569)
T ss_pred CchHHhhHHHHHHHhhccc------hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHH
Confidence 4567889999999998876 77888777777777663 25666677777777662 2 245668888888
Q ss_pred HHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHH
Q 003723 316 VVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 365 (800)
Q Consensus 316 iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~ 365 (800)
+++....++.-..+++++.|..+.+--. |.+-.-+.++|-...
T Consensus 281 m~~~ap~qLs~~lp~iiP~lsevl~DT~-------~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLSEVLWDTK-------PEVRKAGIETLLKFG 323 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHHHHHccCC-------HHHHHHHHHHHHHHH
Confidence 8888888888888888888877763321 344444555554433
No 60
>PRK09687 putative lyase; Provisional
Probab=83.75 E-value=11 Score=40.73 Aligned_cols=54 Identities=15% Similarity=0.012 Sum_probs=31.6
Q ss_pred hhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHH
Q 003723 211 LPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 277 (800)
Q Consensus 211 lP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~ 277 (800)
++.+. ++.+.+|..|...+|++.. -++ .+.+.++.+|.|++ ..||..|+.+|..
T Consensus 165 ~~~L~--d~~~~VR~~A~~aLg~~~~-~~~----~~~~~L~~~L~D~~------~~VR~~A~~aLg~ 218 (280)
T PRK09687 165 INLLK--DPNGDVRNWAAFALNSNKY-DNP----DIREAFVAMLQDKN------EEIRIEAIIGLAL 218 (280)
T ss_pred HHHhc--CCCHHHHHHHHHHHhcCCC-CCH----HHHHHHHHHhcCCC------hHHHHHHHHHHHc
Confidence 33444 4556677777777666621 111 35566666666665 6677777777765
No 61
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=83.08 E-value=24 Score=43.39 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHH
Q 003723 101 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180 (800)
Q Consensus 101 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~k 180 (800)
.|+.|.+|...|..++..||..-. +.. .+..+|.... ..+|+.+
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~-------------------------~~~--~i~k~L~~~~---------q~~y~~R 574 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWA-------------------------RLE--EIPKLLAMDL---------QDNYLVR 574 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchh-------------------------HHH--hhHHHHHHhc---------Ccccchh
Confidence 789999999999998665551100 111 2444444311 1269999
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhh-ccC
Q 003723 181 FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKAL-QML 257 (800)
Q Consensus 181 dgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L-~~~ 257 (800)
-+.++.+..++..+.+ ++...+.+|.+.. ..+.|-+|-+++..+.++-+.+......+.+.-++..| .|+
T Consensus 575 ~t~l~si~~la~v~g~-------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQ-------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ 647 (759)
T ss_pred hHHHHHHHHHHHHhcc-------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence 9999999988888753 2455555555542 26788999999999999999876665555554454555 455
Q ss_pred CCCCCCCccchhhHHHHHHHhh
Q 003723 258 DKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 258 ~~~~~~~lpVrv~AA~AL~~~l 279 (800)
+ +=||+-|-.|.+.+-
T Consensus 648 ~------~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 648 E------LDVRYRAILAFGSIE 663 (759)
T ss_pred c------cchhHHHHHHHHHHH
Confidence 4 889999999888663
No 62
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=83.06 E-value=1.4e+02 Score=37.55 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHH---HHHhhhhcccCCCCCcchHHHHHHHHHHhhcc---CC-------cch
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANL---VRSRVLPLYSVSVCLPYLVASANWILGELASC---LP-------EDI 242 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~f---l~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~---l~-------~~~ 242 (800)
.-.++++--++++.|... ......+. +..-|.-..+ .+++=+-+-|..++++|.+. +. +..
T Consensus 492 s~~ki~~L~fl~~~L~s~----~p~~fhp~~~~Ls~~v~~aV~--d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISH----PPEVFHPHLSALSPPVVAAVG--DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred HHHHHHHHHHHHHHHhcC----ChhhcccchhhhhhHHHHHhc--CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 346677766666655432 22222222 2223332333 56777889999999999885 21 345
Q ss_pred HHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc--CCCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhh
Q 003723 243 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAA 320 (800)
Q Consensus 243 l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~ 320 (800)
...+|..+++.|...+ .+.-||-.|..|+..++-+ +.++..++..+..++.+|.||. ..-.-++++.-|+..-
T Consensus 566 v~~m~~~tl~rL~a~d----~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi-TRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATD----SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI-TRLTAVKALTLIAMSP 640 (1233)
T ss_pred HHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh-HHHHHHHHHHHHHhcc
Confidence 7899999999998766 3689999999999999875 4788889999999999999987 4444556666655432
Q ss_pred hh-hhcchHHHHHHHHHHHHHH
Q 003723 321 NE-NVADHIPYIVSSLVAAISK 341 (800)
Q Consensus 321 ~e-~l~p~a~~l~~~L~~~f~~ 341 (800)
-. .+.|...++...|++-.-|
T Consensus 641 l~i~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 641 LDIDLSPVLTEILPELASFLRK 662 (1233)
T ss_pred ceeehhhhHHHHHHHHHHHHHH
Confidence 22 2455555666665554433
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.77 E-value=24 Score=36.40 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHH-HHHHHHhhccC
Q 003723 179 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADV-YSSLLKALQML 257 (800)
Q Consensus 179 ~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v-~~~ll~~L~~~ 257 (800)
.-=.|+..++.++..+...-.++.+ .+...++.-+. ++..++|.+|..++..+....+ ....+ ...+..++.+.
T Consensus 69 v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~K 143 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLG--DSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSK 143 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG-----HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCC
Confidence 3455667788888887642122211 22233333344 5678999999999999988655 22344 66666677777
Q ss_pred CCCCCCCccchhhHHHHHHHhhhcC-----CCCcc--HHHHHHHHHHhhcc
Q 003723 258 DKGDTSCYPVRASAAGAIVGLLEND-----YMPPE--WYPLLQVIVGRIGY 301 (800)
Q Consensus 258 ~~~~~~~lpVrv~AA~AL~~~l~~~-----~l~p~--l~~ll~~Ll~~l~~ 301 (800)
+ ..||..++..+..++..- .+... +..+...+.+++.+
T Consensus 144 n------~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D 188 (228)
T PF12348_consen 144 N------PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD 188 (228)
T ss_dssp -------HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS
T ss_pred C------HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC
Confidence 6 999999999999998742 23322 35555666664443
No 64
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=80.66 E-value=1.5e+02 Score=36.31 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=60.9
Q ss_pred HHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC---CCCcc-HHHHHHHHHHhhcccccchHHHHHHHHHHHHhh
Q 003723 245 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPE-WYPLLQVIVGRIGYEDEENSILFELLSSVVGAA 320 (800)
Q Consensus 245 ~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---~l~p~-l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~ 320 (800)
.++.-++.-|.|+. -|-|-.++.++.+.+..- .+-.. -..++..++..+..++.+-..+......++..+
T Consensus 716 ~~v~R~v~~lkde~------e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l 789 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEP------EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL 789 (1172)
T ss_pred HHHHHHhhhhcccc------HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 34566666777765 788999999999887652 23322 345567777666655523335568899999999
Q ss_pred hhhhcchHHHHHHHHH
Q 003723 321 NENVADHIPYIVSSLV 336 (800)
Q Consensus 321 ~e~l~p~a~~l~~~L~ 336 (800)
...+.||.++||+.+.
T Consensus 790 g~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTIL 805 (1172)
T ss_pred hhccccchHHHHHHHH
Confidence 9999999999887643
No 65
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.82 E-value=1.5e+02 Score=36.00 Aligned_cols=68 Identities=19% Similarity=0.058 Sum_probs=56.9
Q ss_pred HHHhhhhcccCCCCCcchHHHHHHHHHHhhcc---CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 206 VRSRVLPLYSVSVCLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 206 l~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~---l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
+..|++--.- ++..=+|-|.|.++....+. .++..+..+...++..|.|.. +-||++|..||.+|=..
T Consensus 86 ~f~hlLRg~E--skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre------p~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 86 TFYHLLRGTE--SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE------PNVRIQAVLALSRLQGD 156 (892)
T ss_pred HHHHHHhccc--CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC------chHHHHHHHHHHHHhcC
Confidence 3445555555 67788999999999999984 788889999999999999987 89999999999998643
No 66
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=79.71 E-value=1.6e+02 Score=36.09 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhhcchhH------HHHHHHhhhhcccC---------CCCCcchH-------------HHHHHHH
Q 003723 180 YFGVLMAYGGLQEFLREQKSEFT------ANLVRSRVLPLYSV---------SVCLPYLV-------------ASANWIL 231 (800)
Q Consensus 180 kdgaL~~vg~La~~l~~~~~~~~------e~fl~~~VlP~l~~---------~s~~p~Lr-------------arA~~~l 231 (800)
-|-+|+.+++.-....+.+..+. .-++.++|+|.+.. ..|.-|+| ..|..++
T Consensus 315 sd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl 394 (970)
T COG5656 315 SDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFL 394 (970)
T ss_pred chHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHH
Confidence 58899999998887766443222 55899999999963 13344655 2233444
Q ss_pred HHhhccCCcchHHHHHHHHHHhhccCC
Q 003723 232 GELASCLPEDISADVYSSLLKALQMLD 258 (800)
Q Consensus 232 ~~f~~~l~~~~l~~v~~~ll~~L~~~~ 258 (800)
-...+..++.+++.+++.++.-|....
T Consensus 395 ~~~~sKrke~TfqgiLsf~~sil~qsa 421 (970)
T COG5656 395 IISKSKRKEETFQGILSFLLSILGQSA 421 (970)
T ss_pred HHHhcccchhhhhhHHHHHHHHHhccc
Confidence 344444567788899999988885443
No 67
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=78.36 E-value=56 Score=37.40 Aligned_cols=209 Identities=21% Similarity=0.243 Sum_probs=119.1
Q ss_pred CHHHHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHH
Q 003723 78 DADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVL 157 (800)
Q Consensus 78 DP~EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~ 157 (800)
+..+++++-..... . .+....|.++..++..| +.|..+++ .+..+ +.
T Consensus 186 ~~~~ll~~l~~~~~----~--~~~~~~~~~~~~~la~L-----------------vNK~~~~~---------~l~~~-l~ 232 (415)
T PF12460_consen 186 DLEELLQSLLNLAL----S--SEDEFSRLAALQLLASL-----------------VNKWPDDD---------DLDEF-LD 232 (415)
T ss_pred CHHHHHHHHHHHHH----c--CCChHHHHHHHHHHHHH-----------------HcCCCChh---------hHHHH-HH
Confidence 55667766554210 0 11245688888888887 66654441 23222 33
Q ss_pred HHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhc-
Q 003723 158 PFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS- 236 (800)
Q Consensus 158 ~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~- 236 (800)
..+++... ...-..+..++.++.-+..-+.-+..+....+ .+.++-.+.. ...+..-||++.++-.-.+
T Consensus 233 ~~~~~~~~--------~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~-~~~L~~lL~~-~~~g~~aA~~f~il~~d~~~ 302 (415)
T PF12460_consen 233 SLLQSISS--------SEDSELRPQALEILIWITKALVMRGHPLATEL-LDKLLELLSS-PELGQQAAKAFGILLSDSDD 302 (415)
T ss_pred HHHhhhcc--------cCCcchhHHHHHHHHHHHHHHHHcCCchHHHH-HHHHHHHhCC-hhhHHHHHHHHhhHhcCcHH
Confidence 33333300 11234556666666666665543233332323 3334445552 3457788888877766522
Q ss_pred cCC------------cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC---CCCccHHHHHHHHHHhhcc
Q 003723 237 CLP------------EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGRIGY 301 (800)
Q Consensus 237 ~l~------------~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---~l~p~l~~ll~~Ll~~l~~ 301 (800)
.++ +..+..+++.+++.....+ -.+|..--.||..++++- .+.|+++.++--|++.|..
T Consensus 303 ~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~------~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 303 VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD------DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC------hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 232 3345556666666666554 226666777888888762 6778888888888887755
Q ss_pred cccchHHHH---HHHHHHHHhhhhhhcchHHHHHHHHHH
Q 003723 302 EDEENSILF---ELLSSVVGAANENVADHIPYIVSSLVA 337 (800)
Q Consensus 302 e~~e~e~l~---~~L~~iV~~~~e~l~p~a~~l~~~L~~ 337 (800)
+. .+... +++..+++...+-+.+|...|++.|..
T Consensus 377 ~~--~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 377 PD--ADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred CC--HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 43 33333 555666666666677777777766643
No 68
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=77.55 E-value=7.2 Score=41.55 Aligned_cols=165 Identities=12% Similarity=0.157 Sum_probs=93.5
Q ss_pred HHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHh----hhhcccCC---CCCcchHHHHH
Q 003723 156 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSR----VLPLYSVS---VCLPYLVASAN 228 (800)
Q Consensus 156 i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~----VlP~l~~~---s~~p~LrarA~ 228 (800)
++.+++-|+.-+.++- +...-...-.||.++-++|.. +.....|+..+ +.|.++.+ -++-+||-...
T Consensus 44 LqEIisiYp~l~~~~L-t~~~snRVcnaLaLlQ~vAsh-----petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsL 117 (262)
T PF04078_consen 44 LQEIISIYPALSPPNL-TARQSNRVCNALALLQCVASH-----PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSL 117 (262)
T ss_dssp HHHHHGGGGGTTTT----HHHHHHHHHHHHHHHHHHH------TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHH
T ss_pred HHHHHHHcccCCCccc-CHHHHHHHHHHHHHHHHHHcC-----hHHHHHHHHcCchhhehhhhhccccccccchhhHhHH
Confidence 6777777855432111 111123445566666665542 22234455555 46666642 23569998888
Q ss_pred HHHHHhhccCCcchH-----HHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhhcccc
Q 003723 229 WILGELASCLPEDIS-----ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED 303 (800)
Q Consensus 229 ~~l~~f~~~l~~~~l-----~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l~~e~ 303 (800)
-++|...+.-+++.. .++++..++.|...+ -.-|+-|.--++.++.++. .|-- +-...
T Consensus 118 GVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gs------elSKtvAtfIlqKIL~dd~----------GL~y-iC~t~ 180 (262)
T PF04078_consen 118 GVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGS------ELSKTVATFILQKILLDDV----------GLNY-ICQTA 180 (262)
T ss_dssp HHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-------HHHHHHHHHHHHHHHHSHH----------HHHH-HTSSH
T ss_pred HHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhcc------HHHHHHHHHHHHHHHcchh----------HHHH-HhcCH
Confidence 888888774344322 256788888887654 5667777777777665530 0000 11111
Q ss_pred cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCC
Q 003723 304 EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 346 (800)
Q Consensus 304 ~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~ 346 (800)
+-.-.+..+|..+|..-.++- .+.|..+++.+++|+..++
T Consensus 181 eRf~av~~vL~~mV~~l~~~p---S~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 181 ERFFAVAMVLNKMVEQLVKQP---SPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHccCC---ChhHHHHHHHHHHHHccCH
Confidence 123446777888887664443 5699999999999997765
No 69
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=77.34 E-value=1.8e+02 Score=35.55 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=100.1
Q ss_pred hHhHHHHHhcCCCCCCCCCcccchhHHHH-HHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHH
Q 003723 153 ELLVLPFLSRFPIPCDANASHSRIQKDYF-GVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWIL 231 (800)
Q Consensus 153 ~i~i~~~L~~~~~~~~~~~~~~~~~k~kd-gaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l 231 (800)
+.++-.+|..|+.... -| -.|.-+|.+...+.+.-++|.. .+...++-.|+ ++.|-.|-+|..++
T Consensus 758 E~lidgil~Afqeqtt-----------~d~vml~gfg~V~~~lg~r~kpylp-qi~stiL~rLn--nksa~vRqqaadli 823 (1172)
T KOG0213|consen 758 ERLIDGILYAFQEQTT-----------EDSVMLLGFGTVVNALGGRVKPYLP-QICSTILWRLN--NKSAKVRQQAADLI 823 (1172)
T ss_pred HHHHHHHHHHHHhccc-----------chhhhhhhHHHHHHHHhhccccchH-HHHHHHHHHhc--CCChhHHHHHHHHH
Confidence 3356666666654431 12 2456677777777664567754 56677888898 89999999999999
Q ss_pred HHhhccCC---cc-hHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhhcccc-cch
Q 003723 232 GELASCLP---ED-ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EEN 306 (800)
Q Consensus 232 ~~f~~~l~---~~-~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l~~e~-~e~ 306 (800)
|..+.++. ++ .+..+=-.+...|....++ -++--+-|..||-+.+--..+.|-+..++-.|...|.|.. +=-
T Consensus 824 s~la~Vlktc~ee~~m~~lGvvLyEylgeeypE---vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVq 900 (1172)
T KOG0213|consen 824 SSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPE---VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ 900 (1172)
T ss_pred HHHHHHHHhccHHHHHHHhhHHHHHhcCcccHH---HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHH
Confidence 99998743 33 3333333334555443321 2555556666666665444566666777766666565532 001
Q ss_pred HHHHHHHHHHHHhhhhhhcch-HHHHHHHHHHH
Q 003723 307 SILFELLSSVVGAANENVADH-IPYIVSSLVAA 338 (800)
Q Consensus 307 e~l~~~L~~iV~~~~e~l~p~-a~~l~~~L~~~ 338 (800)
+.-...+.+|.....|.+.+- =-.||-.|+..
T Consensus 901 en~IdLvg~IadrgpE~v~aREWMRIcfeLlel 933 (1172)
T KOG0213|consen 901 ENCIDLVGTIADRGPEYVSAREWMRICFELLEL 933 (1172)
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 224466677777777766551 12344444444
No 70
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.10 E-value=18 Score=37.69 Aligned_cols=170 Identities=12% Similarity=0.121 Sum_probs=95.8
Q ss_pred HHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC---CCCCcchHHHHHHHHH
Q 003723 156 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILG 232 (800)
Q Consensus 156 i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~ 232 (800)
++.+++-|.--+.+. .+...-.....||.++.+++..=.. ++-|...-+--++.|.++. .+++-+||-.+.=++|
T Consensus 94 LqEiisvYpiL~p~~-l~~~~snRvcnaL~lLQclaShPet-k~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIg 171 (315)
T COG5209 94 LQEIISVYPILSPSK-LDERESNRVCNALNLLQCLASHPET-KKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIG 171 (315)
T ss_pred HHHHHhhhhccCccc-cCchhhhHHHHHHHHHHHHhcCcch-heeeeecccceeeHhhhhccccCCccceeeehHHHHHH
Confidence 566666664322111 1222345567788888887765322 2223222223345677764 2678899999999999
Q ss_pred HhhccCCcch-----HHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhhcccccchH
Q 003723 233 ELASCLPEDI-----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENS 307 (800)
Q Consensus 233 ~f~~~l~~~~-----l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l~~e~~e~e 307 (800)
.+-+.-++.. ..++++..++-+.... ---+.-|+--++.++-++.=-.|+-+.+++.-.
T Consensus 172 aLvkNdsq~vi~fLltTeivPLcLrIme~gS------ElSktvaifI~qkil~dDvGLqYiCqT~eRFyA---------- 235 (315)
T COG5209 172 ALVKNDSQYVIKFLLTTEIVPLCLRIMELGS------ELSKTVAIFIFQKILGDDVGLQYICQTFERFYA---------- 235 (315)
T ss_pred HHHhCCCHHHHHHHHhhhHHHHHHHHHHhhh------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------
Confidence 8876433332 2356777777776543 233455555566666555433444555554433
Q ss_pred HHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCC
Q 003723 308 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSS 347 (800)
Q Consensus 308 ~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~ 347 (800)
+..++..+|.+. +.-.+..+..+...+++|+..+|.
T Consensus 236 -v~~vln~mv~ql---Vs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 236 -VNLVLNSMVSQL---VSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred -HHHHHHHHHHHH---hhccchhHHHHHHHHheeecCCHh
Confidence 333333333332 333556778888889988877654
No 71
>PTZ00429 beta-adaptin; Provisional
Probab=76.97 E-value=34 Score=42.32 Aligned_cols=90 Identities=13% Similarity=0.010 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchH--HHHHHHHHHh
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDIS--ADVYSSLLKA 253 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l--~~v~~~ll~~ 253 (800)
|...+--||+.++++... .+ .+.+...|...+. +++||+|..|+-.+.+.... +++.. ..+.+.+..+
T Consensus 118 Np~IRaLALRtLs~Ir~~------~i-~e~l~~~lkk~L~--D~~pYVRKtAalai~Kly~~-~pelv~~~~~~~~L~~L 187 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRVS------SV-LEYTLEPLRRAVA--DPDPYVRKTAAMGLGKLFHD-DMQLFYQQDFKKDLVEL 187 (746)
T ss_pred CHHHHHHHHHHHHcCCcH------HH-HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhh-CcccccccchHHHHHHH
Confidence 455666666666653321 11 1133333444455 78999999999999997653 33332 2455666677
Q ss_pred hccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 254 LQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 254 L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
|.|++ .-|...|..+|..+.+.
T Consensus 188 L~D~d------p~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 188 LNDNN------PVVASNAAAIVCEVNDY 209 (746)
T ss_pred hcCCC------ccHHHHHHHHHHHHHHh
Confidence 77776 88989999999888754
No 72
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=76.52 E-value=1.3e+02 Score=35.40 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=53.7
Q ss_pred HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCC-cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 203 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 203 e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
+.+-.+.++..|+. ..+=--.-+|.++.+.-.... .....++.+.+..+|.+++ ..||..|+.+|.+.+++
T Consensus 36 ~~~~~~~lf~~L~~--~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~------~~Vr~l~l~~l~~~~~~ 107 (503)
T PF10508_consen 36 ERLPEPVLFDCLNT--SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPS------PKVRRLALKQLGRIARH 107 (503)
T ss_pred HhchHHHHHHHHhh--cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHhcC
Confidence 44444457777873 333333567888888777644 4558889999999999987 89999999999999887
Q ss_pred C
Q 003723 282 D 282 (800)
Q Consensus 282 ~ 282 (800)
.
T Consensus 108 ~ 108 (503)
T PF10508_consen 108 S 108 (503)
T ss_pred C
Confidence 5
No 73
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=76.49 E-value=53 Score=35.12 Aligned_cols=109 Identities=16% Similarity=-0.026 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc-CCcchHHHHHHHHHHh
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKA 253 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~-e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~v~~~ll~~ 253 (800)
++..++-++.++|..+.+-..+ .+. +.--...|...+. +|+|-+|-+|++.+..++.. -+....+.++..+...
T Consensus 26 dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~--~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 26 DPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLN--DPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred ChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcC--CCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 5688999999999877653321 111 1112223444455 78999999999999999776 3455566677777776
Q ss_pred hccCCCCCCCCccchhhHHHHHHHhhh-cC---CCCccHHHHH
Q 003723 254 LQMLDKGDTSCYPVRASAAGAIVGLLE-ND---YMPPEWYPLL 292 (800)
Q Consensus 254 L~~~~~~~~~~lpVrv~AA~AL~~~l~-~~---~l~p~l~~ll 292 (800)
..+.. -+-+|+..+-++|.++-- ++ .+.++++.++
T Consensus 102 ~~s~~----lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll 140 (254)
T PF04826_consen 102 TVSSP----LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLL 140 (254)
T ss_pred HhcCC----CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHH
Confidence 55432 137899999999999933 32 3444555444
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.09 E-value=1.7e+02 Score=35.04 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=70.0
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc----CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHh--
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASC----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL-- 278 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~----l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~-- 278 (800)
-....|+-.+.. .+.||=+..|--+-..|+.. +++..-..+|.+++.+++.++. -|.+ -+..|
T Consensus 521 ~v~~kil~~~~D-e~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~------t~~~----il~~f~t 589 (975)
T COG5181 521 RVSRKILEYYSD-EPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT------TVGL----ILPCFST 589 (975)
T ss_pred HHHHHHHhhccC-CcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc------cccE----EEecccc
Confidence 344556666663 56777776665444444442 5677777899999999987651 1111 01111
Q ss_pred -h-hcC-CCCccHHHHHHHHHHhhccccc----chHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhc
Q 003723 279 -L-END-YMPPEWYPLLQVIVGRIGYEDE----ENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM 343 (800)
Q Consensus 279 -l-~~~-~l~p~l~~ll~~Ll~~l~~e~~----e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~ 343 (800)
+ .-+ -.+|+++++++.+++.|.+... ....++..|-.++.+.+|. .+..+|-.++...+
T Consensus 590 v~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~------~~l~klg~iLyE~l 655 (975)
T COG5181 590 VLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET------KELAKLGNILYENL 655 (975)
T ss_pred eeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH------HHHHHHhHHHHHhc
Confidence 1 111 5789999999999998876541 1222444444555554443 44455555544433
No 75
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.39 E-value=2.5e+02 Score=36.11 Aligned_cols=66 Identities=29% Similarity=0.324 Sum_probs=55.3
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHHhhcc-----CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 209 RVLPLYSVSVCLPYLVASANWILGELASC-----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 209 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~-----l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
.|.|.+.. +..+-+|.||-.++...... ...+.+..+++.+...+++.. -|+|..+..+|..+++.
T Consensus 657 ~v~~~~e~-~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~------~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 657 TVDPEFEN-SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS------SPAQASRLKCLKRLLKL 727 (1176)
T ss_pred HhhHHhhc-cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHh
Confidence 67888874 45788999999999999886 345677888899999988775 99999999999999873
No 76
>PRK09687 putative lyase; Provisional
Probab=74.74 E-value=43 Score=36.26 Aligned_cols=83 Identities=12% Similarity=-0.061 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhc
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 255 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~ 255 (800)
+|..+..+..++|.+...-.. .... +.....+.+. ++.+.+|..|.+.+|++.+ ...++.++.+|.
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~----~~~~-a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~ 169 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPL----YSPK-IVEQSQITAF--DKSTNVRFAVAFALSVIND-------EAAIPLLINLLK 169 (280)
T ss_pred CHHHHHHHHHHHhcccccccc----cchH-HHHHHHHHhh--CCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhc
Confidence 578888888888876432110 1111 1222333444 5688999999999987743 247899999999
Q ss_pred cCCCCCCCCccchhhHHHHHHHh
Q 003723 256 MLDKGDTSCYPVRASAAGAIVGL 278 (800)
Q Consensus 256 ~~~~~~~~~lpVrv~AA~AL~~~ 278 (800)
+++ .-||..|+.||..+
T Consensus 170 d~~------~~VR~~A~~aLg~~ 186 (280)
T PRK09687 170 DPN------GDVRNWAAFALNSN 186 (280)
T ss_pred CCC------HHHHHHHHHHHhcC
Confidence 887 66999999999977
No 77
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.45 E-value=10 Score=44.31 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCc-chHHHHHHHHHHhhccCC---c-chHHHHHHH
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLP-YLVASANWILGELASCLP---E-DISADVYSS 249 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~-e~fl~~~VlP~l~~~s~~p-~LrarA~~~l~~f~~~l~---~-~~l~~v~~~ 249 (800)
....+|=|..++|.++..-... ++++ ..-....++..++ .+.+ -+...+-|+++.++...+ + +....+++.
T Consensus 165 ~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred cHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 3466788888999877542210 1121 2222223333344 3343 344479999999999752 2 578899999
Q ss_pred HHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 250 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 250 ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
+..+|.+.+ .=|.+.||-||..+..+
T Consensus 242 L~~ll~~~D------~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 242 LLRLLHSTD------EEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHhcC
Confidence 999999887 66889999999988765
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=70.14 E-value=2.4e+02 Score=33.61 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcchHHHHHHHHHHhhcc-CCcchHHHHHHHHHHhh
Q 003723 178 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASC-LPEDISADVYSSLLKAL 254 (800)
Q Consensus 178 k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~-l~~~~l~~v~~~ll~~L 254 (800)
+..-|-..++-...+.+.. .+ +++.+ .-|.|++ ++..-++.--|...+-.|+.. ..++.+.++++.+-..|
T Consensus 239 knq~a~V~lvr~~~~ll~~-n~----q~~~q-~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL 312 (898)
T COG5240 239 KNQLAGVLLVRATVELLKE-NS----QALLQ-LRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFL 312 (898)
T ss_pred ccchhheehHHHHHHHHHh-Ch----HHHHH-HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 4445555666666666654 22 22222 2355553 133344444455555556554 56788888888888888
Q ss_pred ccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 255 QMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 255 ~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
..+. ...|.+|.+.|.++-.
T Consensus 313 ~s~r------v~~rFsA~Riln~lam 332 (898)
T COG5240 313 KSTR------VVLRFSAMRILNQLAM 332 (898)
T ss_pred hcch------HHHHHHHHHHHHHHHh
Confidence 8886 8999999999999843
No 79
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=70.02 E-value=1.2e+02 Score=32.27 Aligned_cols=165 Identities=10% Similarity=0.092 Sum_probs=89.3
Q ss_pred HHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH----hhhhcccC---CCCCcchHHHHH
Q 003723 156 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRS----RVLPLYSV---SVCLPYLVASAN 228 (800)
Q Consensus 156 i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~----~VlP~l~~---~s~~p~LrarA~ 228 (800)
.+.+++-|..-..+.. +...-....-||.++-+++..=. ....|+.. |+.|.+.. +.++-+||-.+.
T Consensus 73 LqEivaiYp~l~p~~l-~~~qsnRVcnaL~LlQcvASHpd-----Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsL 146 (293)
T KOG3036|consen 73 LQEIVAIYPSLSPPTL-TPAQSNRVCNALALLQCVASHPD-----TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSL 146 (293)
T ss_pred HHHHHhcccccCCCCC-CccccchHHHHHHHHHHHhcCcc-----hHHHHHHccChhhhHHhhhccccCCchHHHhHHHH
Confidence 6666666754332211 23344566777888777765421 22335444 45677764 357789999999
Q ss_pred HHHHHhhccCCcch-----HHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhhcccc
Q 003723 229 WILGELASCLPEDI-----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED 303 (800)
Q Consensus 229 ~~l~~f~~~l~~~~-----l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l~~e~ 303 (800)
=++|.+.+.-+++. -.++++..++-+.... ---+.-|+--++.++-++.=--|+=+..++.
T Consensus 147 GVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS------elSKtvA~fIlqKIlldD~GL~YiCqt~eRF-------- 212 (293)
T KOG3036|consen 147 GVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS------ELSKTVATFILQKILLDDVGLYYICQTAERF-------- 212 (293)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc------HHHHHHHHHHHHHHhhccccHHHHHHhHHHH--------
Confidence 99999877544432 2245566666665433 2233344444444443332112222222222
Q ss_pred cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCC
Q 003723 304 EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 346 (800)
Q Consensus 304 ~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~ 346 (800)
..+..++..+|....+. -.+.+..+.+++++|+..++
T Consensus 213 ---~av~~~L~kmv~~l~~~---ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 213 ---SAVALVLGKMVFQLVSM---PSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred ---HHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCCH
Confidence 22444555555544222 23578888999999986654
No 80
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=68.64 E-value=58 Score=35.27 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=86.0
Q ss_pred chhHHHHHHH-HHHHHHHHHHh-hhcchhHHHHHHHhhhhcccC-CCCCcchHHHHHHHHHHhhccCCcch---------
Q 003723 175 RIQKDYFGVL-MAYGGLQEFLR-EQKSEFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDI--------- 242 (800)
Q Consensus 175 ~~~k~kdgaL-~~vg~La~~l~-~~~~~~~e~fl~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~--------- 242 (800)
+.||...+.- ..+. =.+. ..+.+..+..+--.+-|-|+- +...+-.|.++|.++..|-...+...
T Consensus 87 ~~WK~~~~~~~~~l~---w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl 163 (282)
T PF10521_consen 87 QPWKSNPGLASHVLS---WIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGL 163 (282)
T ss_pred CCcccCCcccHHHHH---HHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcCh
Confidence 4788887543 2222 2222 112333344444444454542 35688999999999999988654333
Q ss_pred HHHHHHHHHHhhc--------cCCCCCCCCccchhhHHHHHHHhhhc---C---CCCccHHHHH-HHHHHhhcccccc--
Q 003723 243 SADVYSSLLKALQ--------MLDKGDTSCYPVRASAAGAIVGLLEN---D---YMPPEWYPLL-QVIVGRIGYEDEE-- 305 (800)
Q Consensus 243 l~~v~~~ll~~L~--------~~~~~~~~~lpVrv~AA~AL~~~l~~---~---~l~p~l~~ll-~~Ll~~l~~e~~e-- 305 (800)
..-+.+++.+||. ++ .+.+=-.|--||..++.- + .-...+..++ +.+++.+.-+. +
T Consensus 164 ~~v~~~al~~~L~~LP~~tp~~~------s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~-~~~ 236 (282)
T PF10521_consen 164 FSVFEDALFPCLYYLPPITPEDE------SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHES-SFS 236 (282)
T ss_pred HHHHHHHHHHHhhcCCCCCCchh------hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceecc-ccC
Confidence 4445566677776 22 255655666677777542 1 1222333444 33555343333 2
Q ss_pred hHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCC
Q 003723 306 NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 346 (800)
Q Consensus 306 ~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~ 346 (800)
...+..++.+.+..+-..+..+...-.+.++.++..++.+|
T Consensus 237 ~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 237 YPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred chhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 34455555554444444455555555555555555555544
No 81
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=68.32 E-value=1.6e+02 Score=31.99 Aligned_cols=155 Identities=14% Similarity=-0.012 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc-----CCc-------chH
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-----LPE-------DIS 243 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-----l~~-------~~l 243 (800)
+...++-++..+|-.+- +.+ .....++.-.. -.++ ..++-+|..|+.++.-+.-. .+. ...
T Consensus 40 ~~~vR~~al~cLGl~~L-ld~---~~a~~~l~l~~-~~~~--~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCL-LDK---ELAKEHLPLFL-QALQ--KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred CHHHHHHHHHHHHHHHH-hCh---HHHHHHHHHHH-HHHH--hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 45888999999996553 222 11222222111 1123 34678888888776544432 111 234
Q ss_pred HHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhhcccc-cchHHHHHHHHHHHHhhhh
Q 003723 244 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANE 322 (800)
Q Consensus 244 ~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l~~e~-~e~e~l~~~L~~iV~~~~e 322 (800)
..+...+.+.|.+.+ .-||..||.++..++-+..+.+ .+.++..|+-.--++. .++..+.++|..+...|..
T Consensus 113 ~~l~~~l~~~l~~~~------~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 113 KSLLKILTKFLDSEN------PELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred hHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 577788888887765 5599999999999987765555 5667776665333443 5778999999999999887
Q ss_pred hhcchHHHHHHHHHHHHHHhcC
Q 003723 323 NVADHIPYIVSSLVAAISKHMH 344 (800)
Q Consensus 323 ~l~p~a~~l~~~L~~~f~~~~~ 344 (800)
.=..+-..+....+.++..++.
T Consensus 186 s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 186 SSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 5333444455555555544433
No 82
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.15 E-value=2.4e+02 Score=34.90 Aligned_cols=88 Identities=17% Similarity=0.045 Sum_probs=53.8
Q ss_pred hhccc-CCCCCcchHHHHHHHHHHhhcc---CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHH-hhhc-CCC
Q 003723 211 LPLYS-VSVCLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG-LLEN-DYM 284 (800)
Q Consensus 211 lP~l~-~~s~~p~LrarA~~~l~~f~~~---l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~-~l~~-~~l 284 (800)
+|.+= .+..++.||.+-.-++.+|-.. .++....-+|+.+-.+- |++. .+.+.=.+-+..|-. ++.+ +.+
T Consensus 618 lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~-D~~s---P~hv~L~EDgmeLW~~~L~n~~~l 693 (978)
T KOG1993|consen 618 LPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST-DPSS---PEHVYLLEDGMELWLTTLMNSQKL 693 (978)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc-CCCC---CceeehhhhHHHHHHHHHhccccc
Confidence 56653 2367999999999999998886 34555555666554444 4431 012222333333332 2443 478
Q ss_pred CccHHHHHHHHHHhhccc
Q 003723 285 PPEWYPLLQVIVGRIGYE 302 (800)
Q Consensus 285 ~p~l~~ll~~Ll~~l~~e 302 (800)
.|.+..++..++..|..-
T Consensus 694 ~p~ll~L~p~l~~~iE~s 711 (978)
T KOG1993|consen 694 TPELLLLFPHLLYIIEQS 711 (978)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 899999999988866443
No 83
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.70 E-value=3.1e+02 Score=33.94 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 204 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 204 ~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
-++.|.+-.+|+ ++.-|..+-|.-.+|.. .++++...+++.+-+.|+.++ .-||=-|+.|.-+|++.
T Consensus 106 lLltNslknDL~--s~nq~vVglAL~alg~i---~s~EmardlapeVe~Ll~~~~------~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 106 LLLTNSLKNDLN--SSNQYVVGLALCALGNI---CSPEMARDLAPEVERLLQHRD------PYIRKKAALCAVRFIRK 172 (866)
T ss_pred HHHHHHHHhhcc--CCCeeehHHHHHHhhcc---CCHHHhHHhhHHHHHHHhCCC------HHHHHHHHHHHHHHHHc
Confidence 367888899999 78889998888888776 458999999999999999887 88999999999999974
No 84
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.03 E-value=62 Score=36.20 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=80.3
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc--CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
.+...|.-.+. +...-.|..|+.-+..=... +-|-...-+.+.+...+.. + +.+=.+....++.++.|+
T Consensus 178 ~yf~~It~a~~--~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-n------l~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 178 LYFEEITEALV--GSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-N------LALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-c------HHHHHHHHHHHHHHhcCC
Confidence 33344444444 34456676666554333222 2233333334444444432 3 677777788888889987
Q ss_pred --CCCccHHHHHHHHHHhhcccc--c----ch-----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCC
Q 003723 283 --YMPPEWYPLLQVIVGRIGYED--E----EN-----SILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEP 349 (800)
Q Consensus 283 --~l~p~l~~ll~~Ll~~l~~e~--~----e~-----e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~ 349 (800)
.+.||+-+++..++.|+.... . ++ +.-..+|..++.+|+..-. .|-+++..++.+.+.++..+
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~----~l~~ri~~tl~k~l~d~~~~ 324 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN----TLQPRITRTLLKALLDPKKP 324 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHcCCCCC
Confidence 788999999998888774322 1 11 2234778888888887633 35556666666666666654
Q ss_pred CchhHHHH
Q 003723 350 WPQVVERG 357 (800)
Q Consensus 350 ~~~~~~~~ 357 (800)
-..+||
T Consensus 325 --~~~~YG 330 (343)
T cd08050 325 --LTTHYG 330 (343)
T ss_pred --cchhhH
Confidence 233554
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=65.54 E-value=53 Score=41.94 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=64.4
Q ss_pred HHHhhhhcccCCCCCcchHHHHHHHHHHhhccC-CcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc---
Q 003723 206 VRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--- 281 (800)
Q Consensus 206 l~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~--- 281 (800)
|...|.-.+.. -..+-.|-.|+.++..++... ++..+..+++-++.++.|+. .-||+.|..+|..++..
T Consensus 423 ~vs~lts~IR~-lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~------a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRA-LKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSE------ADVRATALETLTELLALVRD 495 (1431)
T ss_pred eHHHHHHHHHh-hhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCch------HHHHHHHHHHHHHHHhhccC
Confidence 33444333432 234567888999999999975 56678999999999999987 88999999999999653
Q ss_pred ----C--CCCccHHHHHHHHHH
Q 003723 282 ----D--YMPPEWYPLLQVIVG 297 (800)
Q Consensus 282 ----~--~l~p~l~~ll~~Ll~ 297 (800)
+ .++.|+-|-|+.|+.
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhc
Confidence 1 566778888887765
No 86
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=64.80 E-value=2.5e+02 Score=31.84 Aligned_cols=61 Identities=25% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCCcchHHHHHHHHHHhhccC---C----cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCC
Q 003723 218 VCLPYLVASANWILGELASCL---P----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 283 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l---~----~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~ 283 (800)
.++|.+ +-+.|++.++-... + ...+..+.+++++|+---+. ..+||-.|...++.+++++.
T Consensus 223 ~p~p~l-~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e----~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 223 APPPRL-ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNE----EPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred CCCCcH-HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCC----CcchhHHHHHHHHHHHHccc
Confidence 456665 45788888887752 2 22456677888888763221 49999999999999998763
No 87
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.66 E-value=26 Score=38.92 Aligned_cols=99 Identities=21% Similarity=0.115 Sum_probs=69.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCc--chH--HHHHHH
Q 003723 175 RIQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--DIS--ADVYSS 249 (800)
Q Consensus 175 ~~~k~kdgaL~~vg~La~~l~~~~~~~~-e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~l--~~v~~~ 249 (800)
.....|++||--+--+.+-+.. ..++. -.++.-.+. .++ +..+=||++|.|++|.-..--|+ +.+ ...++.
T Consensus 95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~-~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLG-YLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHH-Hhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 4678999999988888777653 22222 123333333 566 67889999999999998775332 211 135678
Q ss_pred HHHhhccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 250 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 250 ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
++..|..++ +.-||+.|-.||.++|++.
T Consensus 171 Ll~~ls~~~-----~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 171 LLKILSSDD-----PNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HHHHHccCC-----CchHHHHHHHHHHHHHhcC
Confidence 888888655 6889999999999999974
No 88
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.65 E-value=3.9e+02 Score=33.30 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=36.0
Q ss_pred CCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 218 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
+|-|=.|.+|-..+.....+ +.. --.+++.+..++. +.-.|+.||.+++++++
T Consensus 16 ~pdps~rk~aEr~L~~~e~q--~~y----~l~lL~Lv~~~~~----d~~~r~aaav~fKN~iK 68 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ--QNY----PLLLLNLVANGQQ----DPQIRVAAAVYFKNYIK 68 (960)
T ss_pred CCCCccCchHHHHHHHhccC--CCc----hHHHHHHHhccCc----ChhHHHHHHHHHHHHHH
Confidence 35678888899888777664 222 2233444444332 47899999999999998
No 89
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=61.68 E-value=27 Score=31.29 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=53.4
Q ss_pred HhhhhcccCCCCCcchHHHHHHHHHHhhccC--CcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 208 SRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 208 ~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
+.++-+++ +|.+-+||.|...++++-... +......++...+..|.|++ -=|...|..+|..+..
T Consensus 6 ~~al~~L~--dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D------syVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 6 QEALSDLN--DPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED------SYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHcc--CCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHHH
Confidence 34556677 788889999999999998863 45667889999999999987 6688999999888875
No 90
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=61.64 E-value=1e+02 Score=31.36 Aligned_cols=23 Identities=43% Similarity=0.447 Sum_probs=19.1
Q ss_pred hhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 253 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 253 ~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
.+.|++ .-||..|+.++..+++.
T Consensus 48 il~Dp~------~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 48 ILKDPS------PKVRAAAASALAALLEG 70 (182)
T ss_pred HHcCCc------hhHHHHHHHHHHHHHHc
Confidence 345665 99999999999999876
No 91
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.16 E-value=40 Score=42.70 Aligned_cols=92 Identities=16% Similarity=-0.022 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhc
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 255 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~ 255 (800)
++..+-+|+.++|.+... . -+...+...+. ++++.+|..|.+.++.+.. + +.++.++.+|.
T Consensus 788 d~~VR~aA~~aLg~~g~~-----~-----~~~~~l~~aL~--d~d~~VR~~Aa~aL~~l~~---~----~a~~~L~~~L~ 848 (897)
T PRK13800 788 DPLVRAAALAALAELGCP-----P-----DDVAAATAALR--ASAWQVRQGAARALAGAAA---D----VAVPALVEALT 848 (897)
T ss_pred CHHHHHHHHHHHHhcCCc-----c-----hhHHHHHHHhc--CCChHHHHHHHHHHHhccc---c----chHHHHHHHhc
Confidence 466777777777755321 0 11123455566 6788999999999987643 2 35688889998
Q ss_pred cCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHH
Q 003723 256 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 296 (800)
Q Consensus 256 ~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll 296 (800)
|++ .-||..|+.||..+ ...|...+.+...+
T Consensus 849 D~~------~~VR~~A~~aL~~~----~~~~~a~~~L~~al 879 (897)
T PRK13800 849 DPH------LDVRKAAVLALTRW----PGDPAARDALTTAL 879 (897)
T ss_pred CCC------HHHHHHHHHHHhcc----CCCHHHHHHHHHHH
Confidence 887 88999999999875 12344444554443
No 92
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=58.80 E-value=37 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhccCCCCCCCCccchhhH
Q 003723 244 ADVYSSLLKALQMLDKGDTSCYPVRASA 271 (800)
Q Consensus 244 ~~v~~~ll~~L~~~~~~~~~~lpVrv~A 271 (800)
.+++..++..+..+. .+|+.+..
T Consensus 697 KQVIsTil~Ni~P~~-----~p~iNl~~ 719 (1640)
T KOG0262|consen 697 KQVISTILKNIIPEG-----HPPINLES 719 (1640)
T ss_pred chHHHHHHHhcCCCC-----CCcccchh
Confidence 367777777776554 35555543
No 93
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=57.96 E-value=8.3 Score=48.29 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 003723 782 LISKFLKA 789 (800)
Q Consensus 782 ~~~~f~~~ 789 (800)
+|+|.+..
T Consensus 446 iI~RIrk~ 453 (840)
T PF04147_consen 446 IIQRIRKC 453 (840)
T ss_pred HHHHHHHh
Confidence 34444433
No 94
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.94 E-value=23 Score=43.01 Aligned_cols=82 Identities=23% Similarity=0.240 Sum_probs=57.1
Q ss_pred hhhhcccC--CCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCc
Q 003723 209 RVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPP 286 (800)
Q Consensus 209 ~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p 286 (800)
.|+++|+. .+++.-+-+.|...+|+++... -..-..++.+++.+|...+ --|-.+|+..|+.+++.+ ++
T Consensus 392 ~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~-~sv~~tCL~gLv~Llsshd------e~Vv~eaV~vIk~Llq~~--p~ 462 (968)
T KOG1060|consen 392 EILRELQTYIKSSDRSFAAAAVKAIGRCASRI-GSVTDTCLNGLVQLLSSHD------ELVVAEAVVVIKRLLQKD--PA 462 (968)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh-CchhhHHHHHHHHHHhccc------chhHHHHHHHHHHHHhhC--hH
Confidence 46777763 2333347788889999998853 2344578899999998776 446689999999999853 23
Q ss_pred cHHHHHHHHHHhh
Q 003723 287 EWYPLLQVIVGRI 299 (800)
Q Consensus 287 ~l~~ll~~Ll~~l 299 (800)
....++..|.+++
T Consensus 463 ~h~~ii~~La~ll 475 (968)
T KOG1060|consen 463 EHLEILFQLARLL 475 (968)
T ss_pred HHHHHHHHHHHHh
Confidence 3456777777733
No 95
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=57.72 E-value=1e+02 Score=35.68 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHhhhhcccC--CCCCcchHHHHHHHHHHhhcc--C---CcchHHHH
Q 003723 175 RIQKDYFGVLMAYGGLQEFLREQ-KSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASC--L---PEDISADV 246 (800)
Q Consensus 175 ~~~k~kdgaL~~vg~La~~l~~~-~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~--l---~~~~l~~v 246 (800)
.+-|.++-+.+++|++..++... +.++.+ ...--+...... ....--+|-.||.++|.+-+. + +-.....+
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e-~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~ 574 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAE-IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQA 574 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHH-HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHH
Confidence 34567777788888877776521 122211 111111111111 012235788999999998775 2 33456788
Q ss_pred HHHHHHhhccCCCCCCCCccchhhHHHHHHHhh
Q 003723 247 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 247 ~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
|+.+...+.+-. ..-||+.||.||..--
T Consensus 575 F~~L~~Lv~~~~-----NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 575 FNALTSLVTSCK-----NFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHHHHhc-----cceEeehhhhhhcCCC
Confidence 999888887654 4999999999997543
No 96
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.37 E-value=3.7e+02 Score=33.58 Aligned_cols=140 Identities=21% Similarity=0.156 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCC---cchHHHHHHHHHHhh
Q 003723 178 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP---EDISADVYSSLLKAL 254 (800)
Q Consensus 178 k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~v~~~ll~~L 254 (800)
|.-|+.+..+-++++...+ |.+..+.++ +--.. .|-...|+.+|-.+|+....+. .+.+.++++.+++..
T Consensus 825 kVGEai~k~~qa~Gel~~~----y~~~Li~tf-l~gvr--epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~ 897 (982)
T KOG4653|consen 825 KVGEAILKVAQALGELVFK----YKAVLINTF-LSGVR--EPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLE 897 (982)
T ss_pred hHHHHHHHHHHHhccHHHH----HHHHHHHHH-HHhcC--CchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4446666665555555433 333222222 12222 5677899999999999988643 567888999998888
Q ss_pred ccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhhhhcchHHHHHHH
Q 003723 255 QMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSS 334 (800)
Q Consensus 255 ~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~ 334 (800)
+-+. .++||=+|+.-|..+++.- .--+.|++..++. | +..++...|..-.++..-+-.+++-.
T Consensus 898 ~~d~-----s~~vRRaAv~li~~lL~~t--g~dlLpilr~~l~-------D---l~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 898 TTDG-----SVLVRRAAVHLLAELLNGT--GEDLLPILRLLLI-------D---LDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred ccCC-----chhhHHHHHHHHHHHHhcc--chhhHHHHHHHHH-------H---HHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 7654 5999999999999988742 1122233322211 1 44445555555555544444444444
Q ss_pred HHHHHHH
Q 003723 335 LVAAISK 341 (800)
Q Consensus 335 L~~~f~~ 341 (800)
..+..++
T Consensus 961 ei~a~l~ 967 (982)
T KOG4653|consen 961 EIQAALE 967 (982)
T ss_pred HHHHHHH
Confidence 4444444
No 97
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.03 E-value=1.8e+02 Score=34.56 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=52.4
Q ss_pred cchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc--CCCCccHHHHHHHHHHh
Q 003723 221 PYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGR 298 (800)
Q Consensus 221 p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~ 298 (800)
|-|-+-|...++-= . .+...+.++++-++.|+.|++ .-||.+||.++-+...- ..+.++...+...+.+
T Consensus 62 GgLiGlAA~~iaLg-~-~~~~Y~~~iv~Pv~~cf~D~d------~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k- 132 (675)
T KOG0212|consen 62 GGLIGLAAVAIALG-I-KDAGYLEKIVPPVLNCFSDQD------SQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK- 132 (675)
T ss_pred chHHHHHHHHHHhc-c-ccHHHHHHhhHHHHHhccCcc------ceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH-
Confidence 56666555443211 1 122268899999999999997 99999999999999663 4677888888888888
Q ss_pred hcc
Q 003723 299 IGY 301 (800)
Q Consensus 299 l~~ 301 (800)
++.
T Consensus 133 lsa 135 (675)
T KOG0212|consen 133 LSA 135 (675)
T ss_pred Hhc
Confidence 543
No 98
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.25 E-value=36 Score=34.53 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc-C--CCCccHHHHHHHHHHhhcccc-cchHHHHHHHHHH--
Q 003723 243 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-D--YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSV-- 316 (800)
Q Consensus 243 l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~-~--~l~p~l~~ll~~Ll~~l~~e~-~e~e~l~~~L~~i-- 316 (800)
...+++.....|...+ -|-|+-|..++..+++. . .+.|.+++++..+-+.|.... .=.....++|+.+
T Consensus 36 y~~~Lpif~dGL~Et~------~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETE------HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhhHHHHHHhhhhccC------ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4467777788888776 89999999999999987 3 677888888888877675442 1123345666666
Q ss_pred -HHhhhhhhcchHHHHHHHHH
Q 003723 317 -VGAANENVADHIPYIVSSLV 336 (800)
Q Consensus 317 -V~~~~e~l~p~a~~l~~~L~ 336 (800)
-+..++.+.||-.+|.+.+.
T Consensus 110 ~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 110 SSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 45566778888777776653
No 99
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=54.98 E-value=5.1e+02 Score=33.20 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcc---hhHHHHHHHhhhhcccCC-CCCcchHHHHHHHHHHhhccCCcchHHHHHHHH
Q 003723 175 RIQKDYFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYSVS-VCLPYLVASANWILGELASCLPEDISADVYSSL 250 (800)
Q Consensus 175 ~~~k~kdgaL~~vg~La~~l~~~~~---~~~e~fl~~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~l 250 (800)
..|- |++.+++-+|....-..+ .++.-.++.-.+-.-.+. +.--.+|-.||.++=.|+...++..+..+++.+
T Consensus 395 ~aWH---gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L 471 (1133)
T KOG1943|consen 395 SAWH---GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSL 471 (1133)
T ss_pred hHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHH
Confidence 3455 888898888865321111 111111222111111111 333489999999999998886666555555544
Q ss_pred H-----HhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 251 L-----KALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 251 l-----~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
. .++=|++ +-+|=.|+.|++..+-
T Consensus 472 ~s~LL~~AlFDre------vncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 472 ASALLIVALFDRE------VNCRRAASAALQENVG 500 (1133)
T ss_pred HHHHHHHHhcCch------hhHhHHHHHHHHHHhc
Confidence 3 4455776 9999999999999874
No 100
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=54.58 E-value=70 Score=29.39 Aligned_cols=77 Identities=12% Similarity=0.282 Sum_probs=54.8
Q ss_pred CCCccHHHHHHHHHHhhcc---cc--cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 003723 283 YMPPEWYPLLQVIVGRIGY---ED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 357 (800)
Q Consensus 283 ~l~p~l~~ll~~Ll~~l~~---e~--~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~ 357 (800)
++.+++..+++.+-..+.+ .. .|.-...+.|+.+++..+..+.++.++|+..|..++ .. |.+-...
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal----~~-----~~l~~~a 74 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSAL----EI-----PELREEA 74 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----CC-----hhhHHHH
Confidence 3557788888877665544 11 344557788999999999999999999999887774 11 2345556
Q ss_pred HHHHHHHHHhh
Q 003723 358 FAALALMAQSW 368 (800)
Q Consensus 358 f~~la~~~~~~ 368 (800)
|++-..+.++.
T Consensus 75 l~~W~~fi~~L 85 (107)
T PF08064_consen 75 LSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHC
Confidence 77777777766
No 101
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.64 E-value=5.5e+02 Score=32.26 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHH
Q 003723 283 YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISK 341 (800)
Q Consensus 283 ~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~ 341 (800)
++.|.++-+++.|- +.. ++..-...|.++.+..++++.||+..++...-..+++
T Consensus 546 ~ln~sl~~L~~~Lh----~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~ 599 (982)
T KOG2022|consen 546 YLNPSLPLLFQGLH----NSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNK 599 (982)
T ss_pred ccCchHHHHHHHhc----Cch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcc
Confidence 78888888877763 333 3444556699999999999999999999988777755
No 102
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=53.43 E-value=8.9 Score=42.11 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=48.4
Q ss_pred hhcccCCCCCcchHHHHHHHHHHhhccCCcchHH-----HHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCC
Q 003723 211 LPLYSVSVCLPYLVASANWILGELASCLPEDISA-----DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP 285 (800)
Q Consensus 211 lP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~-----~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~ 285 (800)
.|.|. ++---+|--|||.++....-.. +..+ .+.+.+++.|...+ +-.|=+||-|+.+...+..-+
T Consensus 333 ~~lLs--~~ke~irKEaCWTiSNITAGnt-eqiqavid~nliPpLi~lls~ae------~k~kKEACWAisNatsgg~~~ 403 (526)
T COG5064 333 RSLLS--SPKENIRKEACWTISNITAGNT-EQIQAVIDANLIPPLIHLLSSAE------YKIKKEACWAISNATSGGLNR 403 (526)
T ss_pred HHHhc--ChhhhhhhhhheeecccccCCH-HHHHHHHhcccchHHHHHHHHHH------HHHHHHHHHHHHhhhccccCC
Confidence 34455 6666899999999987755322 2222 34577888887665 999999999999998776444
Q ss_pred c
Q 003723 286 P 286 (800)
Q Consensus 286 p 286 (800)
|
T Consensus 404 P 404 (526)
T COG5064 404 P 404 (526)
T ss_pred c
Confidence 5
No 103
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=52.37 E-value=4.3e+02 Score=30.63 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=17.8
Q ss_pred hhhhcchHHHHHHHHHHHHHH
Q 003723 321 NENVADHIPYIVSSLVAAISK 341 (800)
Q Consensus 321 ~e~l~p~a~~l~~~L~~~f~~ 341 (800)
++.++|++..|.++|...+.+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~ 37 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEK 37 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHT
T ss_pred HHHhhhhHHHHHHHHHHHHhc
Confidence 467999999999999888754
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.97 E-value=7.3e+02 Score=33.20 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=72.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC-CCCCcchHHHHHHHHHHhhccCC------cchHHHHH
Q 003723 175 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLP------EDISADVY 247 (800)
Q Consensus 175 ~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~------~~~l~~v~ 247 (800)
..|.-|-||=+-+|+|+..-.. -.++++.+.|--.+.= -.|.+=+|.. +.+-|....+ .+.+.+++
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~----kl~p~l~kLIPrLyRY~yDP~~~Vq~a---M~sIW~~Li~D~k~~vd~y~neIl 1041 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGE----KLEPYLKKLIPRLYRYQYDPDKKVQDA---MTSIWNALITDSKKVVDEYLNEIL 1041 (1702)
T ss_pred chhhcccchhhchHHHHHHHHH----hhhhHHHHhhHHHhhhccCCcHHHHHH---HHHHHHHhccChHHHHHHHHHHHH
Confidence 3699999998888888876543 2366777666544441 1233434432 2333333222 45677888
Q ss_pred HHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC---CCCccHHHHHHHHHH
Q 003723 248 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVG 297 (800)
Q Consensus 248 ~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---~l~p~l~~ll~~Ll~ 297 (800)
+-++..|.+.. ..||-.+|.||.-+++.. .+...++.+...+|.
T Consensus 1042 ~eLL~~lt~ke------wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fR 1088 (1702)
T KOG0915|consen 1042 DELLVNLTSKE------WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFR 1088 (1702)
T ss_pred HHHHHhccchh------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 88889998876 999999999999999863 344555555555555
No 105
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.70 E-value=5.3e+02 Score=31.19 Aligned_cols=131 Identities=17% Similarity=0.115 Sum_probs=79.8
Q ss_pred HHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCC----cchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhh
Q 003723 204 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 204 ~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~----~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
.++...++-.|. ++.|-.|-||..++|.++..+. ...+..+=..+...|....++ -++--+-|.-||-+..
T Consensus 603 ~~ivStiL~~L~--~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypE---vLgsil~Ai~~I~sv~ 677 (975)
T COG5181 603 SMIVSTILKLLR--SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPE---VLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHH---HHHHHHHHHHHHhhhh
Confidence 367777888888 8999999999999999998743 344444444455666543321 2455555555565555
Q ss_pred hcCCCCccHHHHHHHHHHhhcccc-cchHHHHHHHHHHHHhhhhhhcch-HHHHHHHHHHHH
Q 003723 280 ENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADH-IPYIVSSLVAAI 339 (800)
Q Consensus 280 ~~~~l~p~l~~ll~~Ll~~l~~e~-~e~e~l~~~L~~iV~~~~e~l~p~-a~~l~~~L~~~f 339 (800)
+-..++|-+..++-.|...|.|.. +=-..-...+..|.....+.+.|- =-.||-.|+..+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L 739 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL 739 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 545677777777777777666543 001113355666666666666551 123444444443
No 106
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=50.14 E-value=1.2e+02 Score=35.73 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=80.3
Q ss_pred HHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCC--CCCccchhhHHHHHHHhhhc
Q 003723 204 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGD--TSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 204 ~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~--~~~lpVrv~AA~AL~~~l~~ 281 (800)
+++.+.|.-.+. +..+-+|..|...+.. ..-+.++++..+..+.+.-.-. ..++.+=++.-+-+.++++|
T Consensus 206 QlYy~~It~a~~--g~~~~~r~eAL~sL~T------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 206 QLYYKEITEACT--GSDEPLRQEALQSLET------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHhhcc------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 455556666666 5677888888765522 2223334444443333211000 01366667777888888888
Q ss_pred C--CCCccHHHHHHHHHHhhcc-------cccchHH-----HHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCC
Q 003723 282 D--YMPPEWYPLLQVIVGRIGY-------EDEENSI-----LFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSS 347 (800)
Q Consensus 282 ~--~l~p~l~~ll~~Ll~~l~~-------e~~e~e~-----l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~ 347 (800)
+ .+.||+-.+|-.++.|+.. +. ||.. -..++..++..|+..-. .|..++..++.|.+.++.
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~-dnhwaLRDfAA~ll~~i~k~f~~~y~----~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPEL-DNHWALRDFAARLLAQICKNFSTLYN----NLQPRITRTLSKALLDNK 352 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccc-cchHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHhcCCC
Confidence 7 7899999999888887742 21 3322 33556666666665533 266677777777777776
Q ss_pred CCC
Q 003723 348 EPW 350 (800)
Q Consensus 348 ~~~ 350 (800)
.+|
T Consensus 353 ~~~ 355 (576)
T KOG2549|consen 353 KPL 355 (576)
T ss_pred CCc
Confidence 553
No 107
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=49.98 E-value=3.9e+02 Score=31.16 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=85.7
Q ss_pred HHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcc---hhHHHHHHHhhhhcccCCCCCcchHHHHHHHHH
Q 003723 156 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYSVSVCLPYLVASANWILG 232 (800)
Q Consensus 156 i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~---~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~ 232 (800)
+.++|..+ ++...|.-||+.++- .++.++. ++.| +-..-|+-.-. ++...-.|..+-.++.
T Consensus 334 l~EvL~d~-----------~~~~~k~laLrvL~~---ml~~Q~~~l~DstE-~ai~K~Leaa~-ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 334 LLEVLSDS-----------EDEIIKKLALRVLRE---MLTNQPARLFDSTE-IAICKVLEAAK-DSQDEVMRVAEEDCLT 397 (516)
T ss_pred HHHHHccc-----------hhhHHHHHHHHHHHH---HHHhchHhhhchHH-HHHHHHHHHHh-CCchhHHHHHHHHHHH
Confidence 67777652 344567777887664 4443322 2323 32333333333 1444567776666666
Q ss_pred HhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc---CCCCccHHHHHHHHHHhhcccc-cchHH
Q 003723 233 ELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSI 308 (800)
Q Consensus 233 ~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~---~~l~p~l~~ll~~Ll~~l~~e~-~e~e~ 308 (800)
..+++.|...+..+-+.++. .+ .|.-+.+...+..+++. +.+-+.++.++-.+++.-.+.. .=--+
T Consensus 398 ~las~~P~~~I~~i~~~Ilt----~D------~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKt 467 (516)
T KOG2956|consen 398 TLASHLPLQCIVNISPLILT----AD------EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKT 467 (516)
T ss_pred HHHhhCchhHHHHHhhHHhc----Cc------chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhh
Confidence 67777777665555555554 33 66666666688888764 1222222333222222122221 00123
Q ss_pred HHHHHHHHHHhhh-hhhcchHHHHHHHHHH
Q 003723 309 LFELLSSVVGAAN-ENVADHIPYIVSSLVA 337 (800)
Q Consensus 309 l~~~L~~iV~~~~-e~l~p~a~~l~~~L~~ 337 (800)
.+-+|=.+|.+-+ +++.||...|...-..
T Consensus 468 aVfCLVamv~~vG~~~mePhL~~Lt~sk~~ 497 (516)
T KOG2956|consen 468 AVFCLVAMVNRVGMEEMEPHLEQLTSSKLN 497 (516)
T ss_pred HHHhHHHHHHHHhHHhhhhHhhhccHHHHH
Confidence 5677778888888 8899998888775433
No 108
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=49.17 E-value=46 Score=37.48 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=41.3
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHH
Q 003723 228 NWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 297 (800)
Q Consensus 228 ~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~ 297 (800)
..++++|-+.. |.....++.+-+.+..|.+ +-||++|.+-|..|+..+ ..+.+.++|..||+
T Consensus 45 sq~ip~~fk~f-p~la~~a~da~~d~~ed~d------~~ir~qaik~lp~fc~~d-~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 45 SQFIPRFFKHF-PSLADEAIDAQLDLCEDDD------VGIRRQAIKGLPLFCKGD-ALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHhhC-chhhhHHHHhhhccccccc------hhhHHHHHhccchhccCc-hhhhhHHHHHHHHH
Confidence 33444443333 3455567777788887776 999999999999999884 33455555555544
No 109
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=48.57 E-value=2.1e+02 Score=31.65 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=89.5
Q ss_pred hHHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHh---hhhcccCC-CCCcchHHHHHHH
Q 003723 155 LVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSR---VLPLYSVS-VCLPYLVASANWI 230 (800)
Q Consensus 155 ~i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~---VlP~l~~~-s~~p~LrarA~~~ 230 (800)
++..+|..|.+..+ . -+--.+|.+++++..++...-.+....++... ++|..+.+ ..+|=+|..=..+
T Consensus 72 l~~~vL~DY~~~~p-------~-~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~L 143 (319)
T PF08767_consen 72 LLDAVLGDYQNSVP-------D-AREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKL 143 (319)
T ss_dssp HHHHHHHHHHHS-G-------G-GS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCc-------c-ccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHH
Confidence 36778888865321 1 12234677888888777653334443333222 33444432 3566555444444
Q ss_pred HHHhhc-----c--CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC----------CCCccHHHHHH
Q 003723 231 LGELAS-----C--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQ 293 (800)
Q Consensus 231 l~~f~~-----~--l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~----------~l~p~l~~ll~ 293 (800)
++.... . +|++.+..+++.++-++++++ .-|...+..++..++++- ..+.+...+++
T Consensus 144 L~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~------~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~ 217 (319)
T PF08767_consen 144 LRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTN------REISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQ 217 (319)
T ss_dssp HHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSS------HHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 443333 1 789999999999999999887 778888888888887641 35566677888
Q ss_pred HHHHhhcccc--cchHHHHHHHHHHH
Q 003723 294 VIVGRIGYED--EENSILFELLSSVV 317 (800)
Q Consensus 294 ~Ll~~l~~e~--~e~e~l~~~L~~iV 317 (800)
.++..+.+.. ........+|..++
T Consensus 218 ~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 218 DIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 8887555443 23344445555544
No 110
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=48.22 E-value=74 Score=29.23 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=48.1
Q ss_pred CccchhhHHHHHHHhhhc--CCCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhhh-hcchHHHHHHHHHHH
Q 003723 264 CYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANEN-VADHIPYIVSSLVAA 338 (800)
Q Consensus 264 ~lpVrv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~~e~-l~p~a~~l~~~L~~~ 338 (800)
+.+-|..|-.||..+++. +++.+..++++--|-..+..+. =.+.-.++-..+|...+++ +.|+..+++..+.+.
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~-l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPE-LREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 589999999999999983 2566666666666555443332 1233557777777776654 776666666555443
No 111
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.69 E-value=6.7e+02 Score=31.50 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc-C-----CCCc-cHHHHHHHHHHhhc
Q 003723 242 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-D-----YMPP-EWYPLLQVIVGRIG 300 (800)
Q Consensus 242 ~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~-~-----~l~p-~l~~ll~~Ll~~l~ 300 (800)
....+++.++..|++.. .+=+...||+||..+++. + .+.- -|+-++++|+. |.
T Consensus 208 pv~slvp~Lv~LL~~E~-----n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~-Ie 267 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEH-----NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT-IE 267 (1051)
T ss_pred cHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-hh
Confidence 35678899999999876 588999999999999884 2 2222 35666677776 53
No 112
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=47.07 E-value=36 Score=37.65 Aligned_cols=97 Identities=18% Similarity=0.085 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCc----chHHHHHHHHHH
Q 003723 178 KDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE----DISADVYSSLLK 252 (800)
Q Consensus 178 k~kdgaL~~vg~La~~l~~~~~~~~-e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~----~~l~~v~~~ll~ 252 (800)
-.+|-+..++|.++.--.. -++|+ +.-...-++..|.++.+|--+...|-|.++.++.-.+| .+..++++.+.+
T Consensus 172 ~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K 250 (526)
T COG5064 172 DVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK 250 (526)
T ss_pred HHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence 5688899999998743221 12222 11122233444442233434555799999999886432 467788888888
Q ss_pred hhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 253 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 253 ~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
.+...+ .-|-+.|+-||..+.+.
T Consensus 251 Liys~D------~evlvDA~WAiSYlsDg 273 (526)
T COG5064 251 LIYSRD------PEVLVDACWAISYLSDG 273 (526)
T ss_pred HHhhcC------HHHHHHHHHHHHHhccC
Confidence 887765 66889999999988764
No 113
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=46.22 E-value=88 Score=28.90 Aligned_cols=87 Identities=10% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccCCCCCCCCccc--hhhHHHHHHHhhhc--CCCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHhh
Q 003723 245 DVYSSLLKALQMLDKGDTSCYPV--RASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAA 320 (800)
Q Consensus 245 ~v~~~ll~~L~~~~~~~~~~lpV--rv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~~ 320 (800)
.+++.+-+.+.+.+ | ..|+ |..|-+||..+++. +++....++++--|-..|..+. =.+.-.++-..+|..-
T Consensus 11 Gil~~f~~~l~d~~-g---~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e-L~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSS-G---KKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE-LRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcc-c---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHHHhC
Confidence 34455555555554 2 2555 99999999999983 2555666666666655554332 1123446666667666
Q ss_pred hhh-hcchHHHHHHHHH
Q 003723 321 NEN-VADHIPYIVSSLV 336 (800)
Q Consensus 321 ~e~-l~p~a~~l~~~L~ 336 (800)
.++ +.|...+++..+.
T Consensus 86 ~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 86 KEEELGPLLDQIFAAIL 102 (107)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 553 5554444444433
No 114
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=46.22 E-value=2.3e+02 Score=28.02 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC---CCCccHHHHHHHHHHhhcccc--cchHHHHHHH
Q 003723 239 PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGRIGYED--EENSILFELL 313 (800)
Q Consensus 239 ~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---~l~p~l~~ll~~Ll~~l~~e~--~e~e~l~~~L 313 (800)
....+.+...-+.+.|++++ .--|-.++.-+...+++. .+..+-.+.++.+++.|.... .-.+....+|
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~------~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L 92 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKS------AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITL 92 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCC------hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35567788888888998876 667888888888888863 565666777888888666543 1123344555
Q ss_pred HHHHHhh-------hhhhcchHHHHHHHHHHH
Q 003723 314 SSVVGAA-------NENVADHIPYIVSSLVAA 338 (800)
Q Consensus 314 ~~iV~~~-------~e~l~p~a~~l~~~L~~~ 338 (800)
..+...- +|-.+|..+.+++.+.+.
T Consensus 93 ~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l 124 (165)
T PF08167_consen 93 TRLFDLIRGKPTLTREIATPNLPKFIQSLLQL 124 (165)
T ss_pred HHHHHHhcCCCchHHHHhhccHHHHHHHHHHH
Confidence 5544322 123456555555555443
No 115
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=44.70 E-value=97 Score=42.47 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCCcchHHHHHHHHHHhhccCCcc----hHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 218 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l~~~----~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
++.+-.|..|+|+++.+....++. .....++.++..|...+ ..||.+||.||.++.+.
T Consensus 620 sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~------~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 620 SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT------EAVATQSARALAALSRS 681 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC------hHHHHHHHHHHHHHHhC
Confidence 677899999999999998853321 23356788889998776 88999999999999863
No 116
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.66 E-value=62 Score=39.38 Aligned_cols=69 Identities=29% Similarity=0.230 Sum_probs=54.2
Q ss_pred HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 203 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 203 e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
.-...+.++-++. ++.|.+|+-|....+..+ -+.....+..-+.+|+.+.+ ..||..||.++..+-+.+
T Consensus 84 a~~avnt~~kD~~--d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~------~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 84 AILAVNTFLKDCE--DPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDD------PYVRKTAAVCVAKLFDID 152 (734)
T ss_pred HHhhhhhhhccCC--CCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHHhhcCC
Confidence 3356666667777 789999998887665443 35667788999999999987 999999999999997643
No 117
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.61 E-value=2.7e+02 Score=33.11 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=74.0
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHH
Q 003723 101 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180 (800)
Q Consensus 101 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~k 180 (800)
.|-.|.||.--|..+ ++..... ++...+.. +|.+..++|..++++ +.|+
T Consensus 13 lYekRKaaalelEk~-----------------Vk~l~~~------~~~~~i~k-~I~~L~~d~a~s~~~------n~rk- 61 (675)
T KOG0212|consen 13 LYEKRKAAALELEKL-----------------VKDLVNN------NDYDQIRK-VISELAGDYAYSPHA------NMRK- 61 (675)
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHcc------CcHHHHHH-HHHHHHHHhccCccc------cccc-
Confidence 788898888777776 4432211 11002222 356677788766532 2333
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc-CC--cchHHHHHHHHHHhhccC
Q 003723 181 FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LP--EDISADVYSSLLKALQML 257 (800)
Q Consensus 181 dgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~--~~~l~~v~~~ll~~L~~~ 257 (800)
|.|..+.+.+-.+..+..+|.+ -+..-|++.|+ .+.--+|.-||.-+...++. .. ...+..++..+-+...|+
T Consensus 62 -GgLiGlAA~~iaLg~~~~~Y~~-~iv~Pv~~cf~--D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs 137 (675)
T KOG0212|consen 62 -GGLIGLAAVAIALGIKDAGYLE-KIVPPVLNCFS--DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS 137 (675)
T ss_pred -chHHHHHHHHHHhccccHHHHH-HhhHHHHHhcc--CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC
Confidence 8888888877777653334433 33344566666 56667888999988888876 22 234556666666666666
Q ss_pred C
Q 003723 258 D 258 (800)
Q Consensus 258 ~ 258 (800)
+
T Consensus 138 d 138 (675)
T KOG0212|consen 138 D 138 (675)
T ss_pred c
Confidence 5
No 118
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=43.79 E-value=17 Score=43.98 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=5.3
Q ss_pred hHhhHHH
Q 003723 528 TWRACSC 534 (800)
Q Consensus 528 ~~~~~~~ 534 (800)
.|.+|+|
T Consensus 10 vDalcA~ 16 (622)
T PF02724_consen 10 VDALCAC 16 (622)
T ss_pred hHHHHHH
Confidence 5778888
No 119
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.62 E-value=1.5e+02 Score=36.34 Aligned_cols=111 Identities=16% Similarity=0.046 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCC-cchHHHHHHHHHHh
Q 003723 175 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-EDISADVYSSLLKA 253 (800)
Q Consensus 175 ~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-~~~l~~v~~~ll~~ 253 (800)
.+|..+--|++..|++...- +.+ .+.+-+.-.+. +.+||.|..|.-.+.++...-+ -..-..+...+...
T Consensus 98 ~np~iR~lAlrtm~~l~v~~------i~e-y~~~Pl~~~l~--d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~l 168 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVDK------ITE-YLCDPLLKCLK--DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDL 168 (734)
T ss_pred CCHHHHHHHhhceeeEeehH------HHH-HHHHHHHHhcc--CCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHH
Confidence 37888888888877654210 101 12222222344 7899999999988888877522 12223455555556
Q ss_pred hccCCCCCCCCccchhhHHHHHHHhhhcC---CCCccHHHHHHHHHHhhc
Q 003723 254 LQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGRIG 300 (800)
Q Consensus 254 L~~~~~~~~~~lpVrv~AA~AL~~~l~~~---~l~p~l~~ll~~Ll~~l~ 300 (800)
+.|++ ..|-+.|..||..+.+.. ...-...+++.+++..+.
T Consensus 169 l~D~~------p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ 212 (734)
T KOG1061|consen 169 LSDSN------PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN 212 (734)
T ss_pred hcCCC------chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Confidence 66665 667778888888886632 333345677777777554
No 120
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.57 E-value=19 Score=43.47 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=50.7
Q ss_pred CCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh-cCCCCccHHHHHHHH
Q 003723 218 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE-NDYMPPEWYPLLQVI 295 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~-~~~l~p~l~~ll~~L 295 (800)
.+.+++|.||..++.-+-...| +.=..++..+++.|.+++ .-+-.-|..-|..++. |+.++-.+..-+..+
T Consensus 315 D~L~~vk~raL~ti~~lL~~kP-EqE~~LL~~lVNKlGDpq------nKiaskAsylL~~L~~~HPnMK~Vvi~EIer~ 386 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKP-EQENNLLVLLVNKLGDPQ------NKIASKASYLLEGLLAKHPNMKIVVIDEIERL 386 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHhcCCcc------hhhhhhHHHHHHHHHhhCCcceeehHHHHHHH
Confidence 5778999999988876654444 344578889999999987 7777777777887755 666665554444444
No 121
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.19 E-value=4.5e+02 Score=32.30 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHHHHHHH
Q 003723 219 CLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 297 (800)
Q Consensus 219 ~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll~~Ll~ 297 (800)
+-+=||.-+|-.+++..+ ..+...+.--+.+++||.|.+ .-+|+.|-.-|..++..+ .+..|++.|+.
T Consensus 311 sDqNLKYlgLlam~KI~k-tHp~~Vqa~kdlIlrcL~DkD------~SIRlrALdLl~gmVskk----Nl~eIVk~LM~ 378 (877)
T KOG1059|consen 311 SDQNLKYLGLLAMSKILK-THPKAVQAHKDLILRCLDDKD------ESIRLRALDLLYGMVSKK----NLMEIVKTLMK 378 (877)
T ss_pred CCccHHHHHHHHHHHHhh-hCHHHHHHhHHHHHHHhccCC------chhHHHHHHHHHHHhhhh----hHHHHHHHHHH
Confidence 345577777777777665 334556667788999999887 889999888777776643 33444444444
No 122
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=40.62 E-value=11 Score=46.61 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=6.3
Q ss_pred cHHHHHHHHHhch
Q 003723 779 SSQLISKFLKAYP 791 (800)
Q Consensus 779 ~~~~~~~f~~~~~ 791 (800)
.+.+..|..++|-
T Consensus 125 ~e~~~~r~aee~~ 137 (1024)
T KOG1999|consen 125 EEELAKRYAEEYI 137 (1024)
T ss_pred HHHHHHHHHHhhc
Confidence 3444555555544
No 123
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=40.16 E-value=4.8e+02 Score=32.23 Aligned_cols=102 Identities=12% Similarity=0.196 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc--CCCCccHHHHHHHHHHhhcccccchHHHHHHHHHHHHh
Q 003723 242 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA 319 (800)
Q Consensus 242 ~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~l~~e~~e~e~l~~~L~~iV~~ 319 (800)
.+.++.+.++..|.-... .=++|-..--.+.+++.- +.+-|+++.+++.+++ =... +|.-..+..|..++..
T Consensus 692 vf~~~ldvil~~ls~f~k----~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~-s~d~-kEmvdfl~flsQLihk 765 (980)
T KOG2021|consen 692 VFSNILDVILVTLSFFNK----FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS-STDL-KEMVDFLGFLSQLIHK 765 (980)
T ss_pred HHHHHHHHHHHHHhhccc----cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh-cCCH-HHHHHHHHHHHHHHHH
Confidence 345556666666653321 145555555555555542 3688999999999987 2222 3555677889999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHhcCCCCCC
Q 003723 320 ANENVADHIPYIVSSLVAAISKHMHPSSEP 349 (800)
Q Consensus 320 ~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~ 349 (800)
|+.++-|+-.++-.-|...+-.++.++..|
T Consensus 766 fk~~~~~ilnqmlppll~rIfsvi~r~a~p 795 (980)
T KOG2021|consen 766 FKTDCYQILNQMLPPLLNRIFSVIERIAKP 795 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999988877666665555666655443
No 124
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.73 E-value=31 Score=25.48 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=25.0
Q ss_pred HHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhh
Q 003723 245 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 245 ~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
.+++.++++|.+++ .-||-.|+.||.++.
T Consensus 12 g~i~~Lv~ll~~~~------~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPD------PEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSS------HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCC------HHHHHHHHHHHHHHh
Confidence 36788999999776 999999999999875
No 125
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=39.52 E-value=1.3e+02 Score=32.08 Aligned_cols=98 Identities=17% Similarity=0.014 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc-CCcchHHHHHHHHHHhh
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKAL 254 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~v~~~ll~~L 254 (800)
+...|.-||.++..++.-...+ ...+ ....+|..+..+.+..-.++-.+..++..++-. -....+...++.++..|
T Consensus 67 ~~~vr~~AL~aL~Nls~~~en~--~~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL 143 (254)
T PF04826_consen 67 NPSVREKALNALNNLSVNDENQ--EQIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLL 143 (254)
T ss_pred ChHHHHHHHHHHHhcCCChhhH--HHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHH
Confidence 3467788889888877553321 1112 344555555542122457887888888888543 22466778899999999
Q ss_pred ccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 255 QMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 255 ~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
...+ ..+|+++-++|-++-.++
T Consensus 144 ~~G~------~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 144 SSGS------EKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HcCC------hHHHHHHHHHHHHhccCH
Confidence 8776 889999999999998875
No 126
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=39.03 E-value=1.9e+02 Score=26.65 Aligned_cols=78 Identities=10% Similarity=0.278 Sum_probs=56.1
Q ss_pred CCCccHHHHHHHHHHhhcccc-----cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 003723 283 YMPPEWYPLLQVIVGRIGYED-----EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 357 (800)
Q Consensus 283 ~l~p~l~~ll~~Ll~~l~~e~-----~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~ 357 (800)
.+.+++..+++.+-..+.+.. .|.-...+.|+.+|+..+..+.++.++|+..|..++- . |.+-...
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~----~-----~eL~~~a 74 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE----I-----PELRSLA 74 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----c-----hhHHHHH
Confidence 355777888877766443321 2344466889999999999999999999999887751 1 3466677
Q ss_pred HHHHHHHHHhhh
Q 003723 358 FAALALMAQSWE 369 (800)
Q Consensus 358 f~~la~~~~~~~ 369 (800)
|++...+.++.+
T Consensus 75 l~~W~~~i~~L~ 86 (107)
T smart00802 75 LRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHhCC
Confidence 888888888773
No 127
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=38.81 E-value=60 Score=38.30 Aligned_cols=67 Identities=15% Similarity=0.024 Sum_probs=49.4
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhccC-CcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhh
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
-+..||..-+- -...++|+.|...+++|+-.. ++-.-+.+-..+-+||.|.+ =-||=.|+.+++++=
T Consensus 487 ~yvrhIyNR~i--LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~D------deVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLI--LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQD------DEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHH--HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhccc------HHHHHHHHHHHHhhh
Confidence 44455555444 345688999999999998764 34455567777889998876 669999999999873
No 128
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=37.90 E-value=8.8e+02 Score=30.06 Aligned_cols=273 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHHHHHHH
Q 003723 106 KSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLM 185 (800)
Q Consensus 106 ~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~ 185 (800)
..+..||..| .+.+-.|. .|...=+.+-|.++-... +-.....+|+
T Consensus 308 il~v~fLkkL----------------Si~~ENK~----------~m~~~giV~kL~kLl~s~--------~~~l~~~aLr 353 (708)
T PF05804_consen 308 ILAVTFLKKL----------------SIFKENKD----------EMAESGIVEKLLKLLPSE--------NEDLVNVALR 353 (708)
T ss_pred HHHHHHHHHH----------------cCCHHHHH----------HHHHcCCHHHHHHHhcCC--------CHHHHHHHHH
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc-CCcchHH--HHHHHHHHhhccCCCCCC
Q 003723 186 AYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISA--DVYSSLLKALQMLDKGDT 262 (800)
Q Consensus 186 ~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~--~v~~~ll~~L~~~~~~~~ 262 (800)
++.+|+ ........+...-++|-+..--..+=.|.-|+.++...+.. ....++. .+++.+++.|....
T Consensus 354 lL~NLS-----fd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~---- 424 (708)
T PF05804_consen 354 LLFNLS-----FDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENS---- 424 (708)
T ss_pred HHHHhC-----cCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCC----
Q ss_pred CCccchhhHHHHHHH----------------------------------hhhc-----CCCCccHHHHHHHHHHhhcccc
Q 003723 263 SCYPVRASAAGAIVG----------------------------------LLEN-----DYMPPEWYPLLQVIVGRIGYED 303 (800)
Q Consensus 263 ~~lpVrv~AA~AL~~----------------------------------~l~~-----~~l~p~l~~ll~~Ll~~l~~e~ 303 (800)
...|...++..+-+ ++++ +..+....+.+..|++++.+..
T Consensus 425 -~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~ 503 (708)
T PF05804_consen 425 -EEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGD 503 (708)
T ss_pred -CccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC
Q ss_pred cchHHHHHHHHHHHHhhhhhhcchHHHHHH-HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 003723 304 EENSILFELLSSVVGAANENVADHIPYIVS-SLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSS 382 (800)
Q Consensus 304 ~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~-~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~d~~~d~~~~ 382 (800)
+-|.+..+|..+-.-.-..+ .|+.-+-. .|+.-+.+++.+.... +.+.-.+--.++.++.
T Consensus 504 -~ee~~vE~LGiLaNL~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~-dDl~LE~Vi~~gtla~---------------- 564 (708)
T PF05804_consen 504 -SEEFVVECLGILANLTIPDL-DWAQLLQEYNLLPWLKDLLKPGASE-DDLLLEVVILLGTLAS---------------- 564 (708)
T ss_pred -cHHHHHHHHHHHHhcccCCc-CHHHHHHhCCHHHHHHHHhCCCCCC-hHHHHHHHHHHHHHHC----------------
Q ss_pred chhhhhhhH------HHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhcchhHHHHhhHHHHHHHHHH
Q 003723 383 GKWESGQAA------IAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWAD 456 (800)
Q Consensus 383 ~~~~~~~~a------~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~~~~~~l~~~v~ef~~~~~~ 456 (800)
...|.. +.+++..++ .+-...-+++.|+--.++..+.+-.+.+.+++.. +...+..+
T Consensus 565 ---d~~~A~lL~~sgli~~Li~LL------------~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~--~~~~ylid 627 (708)
T PF05804_consen 565 ---DPECAPLLAKSGLIPTLIELL------------NAKQEDDEIVLQILYVFYQLLFHEETREVLLKET--EIPAYLID 627 (708)
T ss_pred ---CHHHHHHHHhCChHHHHHHHH------------HhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc--chHHHHHH
Q ss_pred HH
Q 003723 457 LI 458 (800)
Q Consensus 457 ll 458 (800)
++
T Consensus 628 L~ 629 (708)
T PF05804_consen 628 LM 629 (708)
T ss_pred Hh
No 129
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=37.85 E-value=4.5e+02 Score=26.69 Aligned_cols=100 Identities=22% Similarity=0.178 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHh----hh-----cc-hhH------HH---HHHHhhhhcccCCCCCcchHHHHHHHHHHhhc
Q 003723 176 IQKDYFGVLMAYGGLQEFLR----EQ-----KS-EFT------AN---LVRSRVLPLYSVSVCLPYLVASANWILGELAS 236 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~----~~-----~~-~~~------e~---fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~ 236 (800)
+.|.+=+|+.++.++=+..+ .. +. .|. .. -+...++-.++. ..++-+....+++++.+..
T Consensus 53 ~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-E~~~~~l~q~lK~la~Lv~ 131 (182)
T PF13251_consen 53 SPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQA-EKSPPVLTQLLKCLAVLVQ 131 (182)
T ss_pred chhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHc
Confidence 46888888888877654322 10 11 222 11 133334444443 3344556678899988887
Q ss_pred c-----CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 237 C-----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 237 ~-----l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
. ++.+.+..++..+...+.+.+ ..||+.|..++..++...
T Consensus 132 ~tPY~rL~~~ll~~~v~~v~~~l~~~d------~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 132 ATPYHRLPPGLLTEVVTQVRPLLRHRD------PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred cCChhhcCHhHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCC
Confidence 5 678899999999999998865 999999999999987643
No 130
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=36.98 E-value=56 Score=35.23 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 003723 659 QDCYASLMEAAVQLKEVQEDE 679 (800)
Q Consensus 659 ~~~~~~L~~a~~~~~e~~~~~ 679 (800)
......+..|+++++|..++.
T Consensus 129 ~~~~~lvkDa~~El~E~~~~~ 149 (275)
T PF13324_consen 129 KQSRDLVKDALEELEEWDEEP 149 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334777889999999998753
No 131
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=36.74 E-value=71 Score=36.59 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=60.8
Q ss_pred HHHHHHhhhhcccC--CCCCcchHHHHHHHHHHhhccCCc----chHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHH
Q 003723 203 ANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIV 276 (800)
Q Consensus 203 e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~----~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~ 276 (800)
.+-+.++++|.+-. .....-.|......++..-+..|. ..+.++++.++++|..++ .-||..+-.+|.
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~------~~v~~s~L~tL~ 390 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD------ADVLLSSLETLK 390 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Confidence 34444555666542 111222444444455555555664 356789999999998776 679999999999
Q ss_pred HhhhcC--CCCccHHHHHHHHHH
Q 003723 277 GLLEND--YMPPEWYPLLQVIVG 297 (800)
Q Consensus 277 ~~l~~~--~l~p~l~~ll~~Ll~ 297 (800)
.++++. .+.+|+..++..|++
T Consensus 391 ~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 391 MILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHh
Confidence 999875 788888888888887
No 132
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=36.20 E-value=6.3e+02 Score=27.87 Aligned_cols=61 Identities=13% Similarity=0.287 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHh
Q 003723 307 SILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 367 (800)
Q Consensus 307 e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~ 367 (800)
..+..++.++|.+.++.+.|..+.|...+....+..+.+.-+.+|.+-..-|+-|.++.+.
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~ 150 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH 150 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999999999999988888899998889999888883
No 133
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.55 E-value=55 Score=41.52 Aligned_cols=57 Identities=25% Similarity=0.187 Sum_probs=45.8
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 209 RVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 209 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
.+++.|. ++.|.+|..|+..++++.. ..+++.+..+|.|++ ..||..|+.||..+..
T Consensus 625 ~L~~~L~--D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d------~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 625 ELAPYLA--DPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGA------AAVRRAAAEGLRELVE 681 (897)
T ss_pred HHHHHhc--CCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHh
Confidence 3445566 7899999999999998853 236788888898887 8899999999988754
No 134
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=34.73 E-value=34 Score=36.35 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=8.2
Q ss_pred cHHHHHHHHHhc
Q 003723 779 SSQLISKFLKAY 790 (800)
Q Consensus 779 ~~~~~~~f~~~~ 790 (800)
=++-=.+|+++|
T Consensus 231 rSdfH~kFl~Ky 242 (244)
T PF04889_consen 231 RSDFHKKFLNKY 242 (244)
T ss_pred ccHHHHHHHHHh
Confidence 455666888777
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=34.38 E-value=61 Score=41.59 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=76.0
Q ss_pred CCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc-C--CCCccHHHHHHH
Q 003723 218 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-D--YMPPEWYPLLQV 294 (800)
Q Consensus 218 s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~-~--~l~p~l~~ll~~ 294 (800)
++++.+|..|..+++.+.+....+.+..+++.++..+.+.+ -.||=.+|..+-..+.. . .+.|+.+-++-.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~------~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD------KFVRRQGADELIELLDAVLMVGLVPYNPLLVVP 900 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh------hHhhhhhHHHHHHHHHHhhcccccccceeehhh
Confidence 78999999999999999998888899999999999998876 55666666555555443 2 678887777778
Q ss_pred HHHhhcccccc--hHHHHHHHHHHHHhhhhhhcchH-HHHHHHHHHH
Q 003723 295 IVGRIGYEDEE--NSILFELLSSVVGAANENVADHI-PYIVSSLVAA 338 (800)
Q Consensus 295 Ll~~l~~e~~e--~e~l~~~L~~iV~~~~e~l~p~a-~~l~~~L~~~ 338 (800)
|+.+++... | -+...++..+++-.-..+-.+.- ..|.+.|.+.
T Consensus 901 llr~msd~~-d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ 946 (1549)
T KOG0392|consen 901 LLRRMSDQI-DSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLAS 946 (1549)
T ss_pred hhcccccch-HHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHh
Confidence 888555443 3 23344555555544333321111 2455555444
No 136
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.06 E-value=1.1e+03 Score=29.55 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh-cC--------CCC--------ccHHHHHHHHHHhhcccccch
Q 003723 244 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE-ND--------YMP--------PEWYPLLQVIVGRIGYEDEEN 306 (800)
Q Consensus 244 ~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~-~~--------~l~--------p~l~~ll~~Ll~~l~~e~~e~ 306 (800)
...+..+--.+..+. ..+|..|.+.|...-. ++ .+. ......+..|++ =.++. .-
T Consensus 281 ~pavs~Lq~flssp~------~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLK-TG~e~-sv 352 (865)
T KOG1078|consen 281 APAVSVLQLFLSSPK------VALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLK-TGTES-SV 352 (865)
T ss_pred chHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHH-hcchh-HH
Confidence 335666666666776 8899999999988832 32 111 112333445555 34444 56
Q ss_pred HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Q 003723 307 SILFELLSSVVGAANENVADHIPYIVSSLVAAIS 340 (800)
Q Consensus 307 e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~ 340 (800)
+.|++.+..+|..-+++..-.+++-+..|+..|-
T Consensus 353 ~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 353 DRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred HHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc
Confidence 8889999999998888887777777777777773
No 137
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=32.93 E-value=45 Score=23.17 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=20.9
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHHhhcc
Q 003723 209 RVLPLYSVSVCLPYLVASANWILGELASC 237 (800)
Q Consensus 209 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~ 237 (800)
.++..++ ++++-+|..|++.+|++.+.
T Consensus 4 ~l~~~l~--D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 4 ILLQLLN--DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHT---SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 4445566 78999999999999998763
No 138
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=32.71 E-value=2.3e+02 Score=35.08 Aligned_cols=90 Identities=17% Similarity=0.073 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHH-HHHHHHhh
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADV-YSSLLKAL 254 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v-~~~ll~~L 254 (800)
|...+-.||+.+|.+...= ..+ -+..-|.-.+. ++++|+|..|.-.+.++-. ++++..... ...+++.|
T Consensus 105 N~~iR~~AlR~ls~l~~~e------l~~-~~~~~ik~~l~--d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 105 NEEIRGFALRTLSLLRVKE------LLG-NIIDPIKKLLT--DPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKEL 174 (757)
T ss_pred CHHHHHHHHHHHHhcChHH------HHH-HHHHHHHHHcc--CCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHH
Confidence 5677888888887654321 111 12222333455 7999999999999888866 555555555 55555555
Q ss_pred c-cCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 255 Q-MLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 255 ~-~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
. |++ +.|...|-.++..+-..
T Consensus 175 ~~D~d------P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADSD------PIVIANALASLAEIDPE 196 (757)
T ss_pred hhCCC------chHHHHHHHHHHHhchh
Confidence 5 454 78888888888877543
No 139
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.61 E-value=1e+03 Score=29.34 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhccC--C---cchHHHHHHHH-HHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 225 ASANWILGELASCL--P---EDISADVYSSL-LKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 225 arA~~~l~~f~~~l--~---~~~l~~v~~~l-l~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
+.--.++|.|.++. . ++++-.++..+ -+.|+.++ .-||..||.-+-.+..
T Consensus 148 sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~N------s~VrsnAa~lf~~~fP 203 (1005)
T KOG1949|consen 148 SKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARN------SEVRSNAALLFVEAFP 203 (1005)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCc------hhhhhhHHHHHHHhcc
Confidence 44557899998873 2 46777777665 58888887 8999999998877743
No 140
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.75 E-value=2.9e+02 Score=32.33 Aligned_cols=88 Identities=19% Similarity=0.095 Sum_probs=67.2
Q ss_pred HHHHhhhhcccC-CCCCcchHHHHHHHHHHhhccCCc---chHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 205 LVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPE---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 205 fl~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~---~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
.+.+.++-..+. .+|.--+|.-||..++..++-.|. .+...++.+++..|-|+. +.+|..+|..+|...++
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~-----~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL-----NEEVQLEAMKCLTMVLE 329 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHH
Confidence 455555544443 367779999999999999887553 356678899999999887 69999999999999876
Q ss_pred ---cCCCCccHHHHHHHHHH
Q 003723 281 ---NDYMPPEWYPLLQVIVG 297 (800)
Q Consensus 281 ---~~~l~p~l~~ll~~Ll~ 297 (800)
+..+.++..++--.+-+
T Consensus 330 ~~~~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRT 349 (533)
T ss_pred hhhhcchhhhchhHHHHHHH
Confidence 34778887777666655
No 141
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=31.37 E-value=76 Score=39.30 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=9.2
Q ss_pred cchhhHHHHHHHHh
Q 003723 753 DEVDQLKVVASSIE 766 (800)
Q Consensus 753 D~v~~~~~~~~~~~ 766 (800)
.+.++++.|+..-.
T Consensus 104 e~p~~~~~~~~e~~ 117 (895)
T KOG2076|consen 104 EEPEGLKQFKGEGE 117 (895)
T ss_pred ccCchhhhhhhhhe
Confidence 34677777777664
No 142
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=31.36 E-value=9.8e+02 Score=28.66 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=10.7
Q ss_pred cchhhHHHHHHHHhhh
Q 003723 753 DEVDQLKVVASSIERY 768 (800)
Q Consensus 753 D~v~~~~~~~~~~~~~ 768 (800)
.....|..+++.+++.
T Consensus 304 ~~~~lf~~Ll~~F~~~ 319 (563)
T PF05327_consen 304 NADSLFNTLLSIFESH 319 (563)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777777777643
No 143
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=30.51 E-value=1.7e+03 Score=31.27 Aligned_cols=95 Identities=19% Similarity=0.064 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcch---H--HHHHHHHHH
Q 003723 178 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDI---S--ADVYSSLLK 252 (800)
Q Consensus 178 k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~---l--~~v~~~ll~ 252 (800)
..+..+++++|.++..-..+...+.+.-....++..+. ++.+-+|..|+|.++..+.. +++. + ..+++.+++
T Consensus 461 ~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~--s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 461 QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE--TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHH
Confidence 55667778888877432111111111112223333455 67889999999999999874 2221 2 146778888
Q ss_pred hhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 253 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 253 ~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
.|.+.+ .-+|-.|+.||.+++.+
T Consensus 538 LL~sgd------~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 538 LLKNGG------PKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHhCCC------HHHHHHHHHHHHHHHhc
Confidence 998765 78999999999999875
No 144
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=30.36 E-value=39 Score=35.73 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=5.2
Q ss_pred HHhhccChHHHH
Q 003723 586 SSCYLCYPAVVE 597 (800)
Q Consensus 586 ~~~~~y~p~~~l 597 (800)
---+.|=|..+.
T Consensus 94 de~Ll~Wp~~~~ 105 (303)
T KOG3064|consen 94 DEQLLYWPKYVI 105 (303)
T ss_pred HHHHhcchHHHH
Confidence 333444455433
No 145
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=30.05 E-value=2.5e+02 Score=35.22 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc--CCCCccHHHHHHHHHHhhcccccchH-H-----HHHHH
Q 003723 242 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENS-I-----LFELL 313 (800)
Q Consensus 242 ~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~--~~l~p~l~~ll~~Ll~~l~~e~~e~e-~-----l~~~L 313 (800)
.+..+++.++++|..++ +.||+++-..|+.++.. ..+..++..++-.++. |+..- +|. . -.++|
T Consensus 906 ~~~~LlPLLLq~Ls~~D------~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLs-ls~~~-~n~~~~VR~~ALqcL 977 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPD------VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLS-LSSDN-DNNMMVVREDALQCL 977 (1030)
T ss_pred chhhHHHHHHHhcCCCc------cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHh-cCCCC-CcchhHHHHHHHHHH
Confidence 45688999999999997 99999999999999763 3677788888889988 76543 331 1 22555
Q ss_pred HHHHH-hhhhhhcchHHHHHHHHHH
Q 003723 314 SSVVG-AANENVADHIPYIVSSLVA 337 (800)
Q Consensus 314 ~~iV~-~~~e~l~p~a~~l~~~L~~ 337 (800)
..+.+ .=...+.||-+++.+.|..
T Consensus 978 ~aL~~~~P~~~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 978 NALTRRLPTKSLLSFRPLVLRALIK 1002 (1030)
T ss_pred HHHhccCCCcccccccHHHHHHhhh
Confidence 55555 2233466777776666543
No 146
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.77 E-value=5.6e+02 Score=28.37 Aligned_cols=115 Identities=13% Similarity=0.039 Sum_probs=69.8
Q ss_pred HHHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCC-CCCcchHHHHHHHHHHh
Q 003723 156 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVS-VCLPYLVASANWILGEL 234 (800)
Q Consensus 156 i~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~-s~~p~LrarA~~~l~~f 234 (800)
|..++....++.+ -..-+|.+.++.+...+.+. . .+.+...|...+..+ -...|+|..|...+-..
T Consensus 131 ii~vvkslKNlRS---------~VsraA~~t~~difs~ln~~---i-~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aM 197 (334)
T KOG2933|consen 131 IIAVVKSLKNLRS---------AVSRAACMTLADIFSSLNNS---I-DQELDDLVTQLLHKASQDNRFVREDAEKALVAM 197 (334)
T ss_pred HHHHHHHhcChHH---------HHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 5666665444321 22345555556555554431 1 224555555555432 34689999999999888
Q ss_pred hccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCCccHHHHH
Q 003723 235 ASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLL 292 (800)
Q Consensus 235 ~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~p~l~~ll 292 (800)
.+...+ ..+++.+..+++..+ .-||..|+.+..+++.--.+.|...+.+
T Consensus 198 V~~vtp---~~~L~~L~~~~~~~n------~r~r~~a~~~~~~~v~rl~v~~~~~~~~ 246 (334)
T KOG2933|consen 198 VNHVTP---QKLLRKLIPILQHSN------PRVRAKAALCFSRCVIRLGVLPVLLQGS 246 (334)
T ss_pred HhccCh---HHHHHHHHHHHhhhc------hhhhhhhhccccccceeccccchhhHhH
Confidence 776444 357788888888877 8899999988877755323334333333
No 147
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.16 E-value=37 Score=37.99 Aligned_cols=7 Identities=43% Similarity=0.534 Sum_probs=3.3
Q ss_pred hhhhhhc
Q 003723 487 ELKNFIV 493 (800)
Q Consensus 487 ~L~Nfi~ 493 (800)
.+.||..
T Consensus 105 ~~~n~~~ 111 (514)
T KOG3130|consen 105 VMKNFES 111 (514)
T ss_pred HHHhhHH
Confidence 4455544
No 148
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=27.94 E-value=48 Score=40.16 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=8.0
Q ss_pred cccccccCcHHHH
Q 003723 771 VIMQGQTLSSQLI 783 (800)
Q Consensus 771 ~~~~~~~~~~~~~ 783 (800)
=|+---++.++.+
T Consensus 238 LW~AIvGlT~q~i 250 (622)
T PF02724_consen 238 LWLAIVGLTDQYI 250 (622)
T ss_pred HHHHHHhhhHHhh
Confidence 5666666666655
No 149
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=26.69 E-value=2.1e+02 Score=34.22 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=52.8
Q ss_pred HhhhhcccCCCCCcchHHHHHHHHHHhhcc---CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 208 SRVLPLYSVSVCLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 208 ~~VlP~l~~~s~~p~LrarA~~~l~~f~~~---l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
.||+--+- ++..=+|.|.|.++....++ .++.....+...+...+-|.+ ..||.+|..||..+=+
T Consensus 94 ~h~lRg~e--skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE------~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 94 YHLLRGTE--SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDRE------KAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHhccc--CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHh
Confidence 45555555 77888999999999999998 346667777888888888886 8999999999998854
No 150
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=25.60 E-value=38 Score=40.05 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=4.2
Q ss_pred ChhhHHHHHH
Q 003723 505 PPQSIIEGIG 514 (800)
Q Consensus 505 ~~~~i~~i~~ 514 (800)
++..+|.=++
T Consensus 690 ~idiLFSNik 699 (1001)
T COG5406 690 HIDILFSNIK 699 (1001)
T ss_pred eeEEeeccch
Confidence 3444444444
No 151
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=25.00 E-value=1.9e+02 Score=32.72 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHH
Q 003723 309 LFELLSSVVGAANENVADHIPYIVSSLVAAISK 341 (800)
Q Consensus 309 l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~ 341 (800)
+...+....++|.|...||++..++.+-+.+.+
T Consensus 116 i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~ 148 (370)
T PF08506_consen 116 ICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTK 148 (370)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666778899999999998888776655544
No 152
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=24.94 E-value=4.1e+02 Score=34.54 Aligned_cols=113 Identities=16% Similarity=0.042 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcc-hHHHHHHHHHHhhcc
Q 003723 178 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED-ISADVYSSLLKALQM 256 (800)
Q Consensus 178 k~kdgaL~~vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~-~l~~v~~~ll~~L~~ 256 (800)
..|-+-|-.++-|..+..+.+. ..++..|+.-.|+ ..-+.||+.=..-+.-.+-..... .-.-+++.+.+.|.|
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhc--CccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC
Confidence 4555666666666666554332 3467777777788 567888865444333222223344 334567888999999
Q ss_pred CCCCCCCCccchhhHHHHHHHhhhcC-CCCccHHHHHHHHHHhhcc
Q 003723 257 LDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIVGRIGY 301 (800)
Q Consensus 257 ~~~~~~~~lpVrv~AA~AL~~~l~~~-~l~p~l~~ll~~Ll~~l~~ 301 (800)
++ --|-+.|-.||..+|+.. .=+|++..+++..+.+|--
T Consensus 668 ~E------E~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~h 707 (1431)
T KOG1240|consen 668 GE------EAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCH 707 (1431)
T ss_pred cc------hhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeC
Confidence 87 556689999999999977 4568889999988875643
No 153
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=6.3e+02 Score=31.74 Aligned_cols=123 Identities=15% Similarity=0.008 Sum_probs=81.0
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHHhhcc---CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCCC
Q 003723 209 RVLPLYSVSVCLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP 285 (800)
Q Consensus 209 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~---l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l~ 285 (800)
.++-.+. ++.+.+|+-|...+..+... .+-.+...++...+..|.+.+ .=|...|..++..+++- +=.
T Consensus 731 eai~sl~--d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkded------syvyLnaI~gv~~Lcev-y~e 801 (982)
T KOG4653|consen 731 EAISSLH--DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDED------SYVYLNAIRGVVSLCEV-YPE 801 (982)
T ss_pred HHHHHhc--CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccC------ceeeHHHHHHHHHHHHh-cch
Confidence 3444555 68889999999999988874 233456689999999999987 77999999999888873 111
Q ss_pred ccHHHHHHHHHHhhcccccchHH---HHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCC
Q 003723 286 PEWYPLLQVIVGRIGYEDEENSI---LFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 346 (800)
Q Consensus 286 p~l~~ll~~Ll~~l~~e~~e~e~---l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~ 346 (800)
..++.+...+.+ ..+.- .-|+ +-+++.+++..-+|-+.-|-. .|.++|++-+.+|
T Consensus 802 ~il~dL~e~Y~s-~k~k~-~~d~~lkVGEai~k~~qa~Gel~~~y~~----~Li~tfl~gvrep 859 (982)
T KOG4653|consen 802 DILPDLSEEYLS-EKKKL-QTDYRLKVGEAILKVAQALGELVFKYKA----VLINTFLSGVREP 859 (982)
T ss_pred hhHHHHHHHHHh-cccCC-CccceehHHHHHHHHHHHhccHHHHHHH----HHHHHHHHhcCCc
Confidence 223344444554 22211 1233 235666666665555544332 6778899988866
No 154
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.28 E-value=1e+03 Score=29.43 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCcc
Q 003723 187 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYP 266 (800)
Q Consensus 187 vg~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lp 266 (800)
+|-+.--+.-....-.-....+.|-.++. |..|-...-|..++|..++ -++...+..-+-+.|.+++ +...
T Consensus 93 IGYl~is~L~n~n~dl~klvin~iknDL~--srn~~fv~LAL~~I~niG~---re~~ea~~~DI~KlLvS~~----~~~~ 163 (938)
T KOG1077|consen 93 IGYLFISLLLNENSDLMKLVINSIKNDLS--SRNPTFVCLALHCIANIGS---REMAEAFADDIPKLLVSGS----SMDY 163 (938)
T ss_pred HhHHHHHHHHhcchHHHHHHHHHHHhhhh--cCCcHHHHHHHHHHHhhcc---HhHHHHhhhhhHHHHhCCc----chHH
Q ss_pred chhhHHHHHHHhhhcC--CCCccHHHHHHHHHHhhcccc-cchHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhc
Q 003723 267 VRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM 343 (800)
Q Consensus 267 Vrv~AA~AL~~~l~~~--~l~p~l~~ll~~Ll~~l~~e~-~e~e~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~ 343 (800)
||=.||.||-++++.. .+.| ..-.++++.+|.+.. .=.-.....+..+|.+-.+.-.--.+--+..|..+....-
T Consensus 164 vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~ 241 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVG 241 (938)
T ss_pred HHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcc
Q ss_pred CC--------CCCCCchh
Q 003723 344 HP--------SSEPWPQV 353 (800)
Q Consensus 344 ~~--------~~~~~~~~ 353 (800)
.+ .|.||.++
T Consensus 242 t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 242 TSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred cchhhceeecCCChHHHH
No 155
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=24.16 E-value=56 Score=39.68 Aligned_cols=8 Identities=0% Similarity=0.152 Sum_probs=4.6
Q ss_pred hhhHHHHH
Q 003723 654 GSSLLQDC 661 (800)
Q Consensus 654 ~~~l~~~~ 661 (800)
|.+++..+
T Consensus 848 W~~ImKTI 855 (960)
T KOG1189|consen 848 WTKIMKTI 855 (960)
T ss_pred HHHHhhhh
Confidence 66666544
No 156
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=23.86 E-value=26 Score=43.20 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 003723 307 SILFELLSSVVG 318 (800)
Q Consensus 307 e~l~~~L~~iV~ 318 (800)
|++.++....|+
T Consensus 321 e~iw~v~~~~v~ 332 (787)
T PF03115_consen 321 ETIWQVVDTAVD 332 (787)
T ss_dssp ------------
T ss_pred ceEEEEccchhh
Confidence 334444444443
No 157
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=23.83 E-value=7.8e+02 Score=31.70 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=83.5
Q ss_pred HHHHhhhhcccCCCCCcchHHHHHHHHHHhhccCCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcCCC
Q 003723 205 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM 284 (800)
Q Consensus 205 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~~l 284 (800)
++..|++..++ +.--.+|-.|++-+|+..+.+|.+...+++..++.++..-+ +.-.=-.|+.||..+-....+
T Consensus 341 ~vie~Lls~l~--d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e-----~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 341 FVIEHLLSALS--DTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE-----DDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHhcc--CCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC-----chhHHHHHHHHHHHHHhcCCc
Confidence 77778888887 55679999999999999999999999999999999775433 133334899999999887766
Q ss_pred Cc----cHHHHHHHHHHhhcccc-------cc--hHHHHHHHHHHHHhhhhh-hcchHHHHHHHHHHH
Q 003723 285 PP----EWYPLLQVIVGRIGYED-------EE--NSILFELLSSVVGAANEN-VADHIPYIVSSLVAA 338 (800)
Q Consensus 285 ~p----~l~~ll~~Ll~~l~~e~-------~e--~e~l~~~L~~iV~~~~e~-l~p~a~~l~~~L~~~ 338 (800)
.| .+.|++.+- +.-+. +. -|.---++=.+.-.|+.. +.|+...|...|+..
T Consensus 414 lps~l~dVvplI~ka---L~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~ 478 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKA---LHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV 478 (1133)
T ss_pred chHHHHHHHHHHHHH---hhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH
Confidence 66 444444322 21111 00 122223334445555554 778777777777544
No 158
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=23.79 E-value=58 Score=38.07 Aligned_cols=9 Identities=44% Similarity=0.139 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 003723 632 EIKLAVLTL 640 (800)
Q Consensus 632 D~Kl~ilgL 640 (800)
++|=|-.||
T Consensus 167 ~~~dA~~Al 175 (678)
T KOG0127|consen 167 EKKDAEKAL 175 (678)
T ss_pred eHHHHHHHH
Confidence 333344443
No 159
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=23.26 E-value=9.4e+02 Score=25.76 Aligned_cols=216 Identities=16% Similarity=0.242 Sum_probs=117.9
Q ss_pred CcccCHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHhhccccCChhhHhhHhhCHHHHHHHcCCCchhhhcccccc
Q 003723 21 LDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 100 (800)
Q Consensus 21 ~~~ls~~~~~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~g~~ed 100 (800)
...++..-+..+++|+..-+.. |..+.+.+.-+..-+ ..-.++.+. ...-.+.|-++.+. -.=
T Consensus 32 ~~~L~~~ev~~L~~F~~~rl~D---~~~~~~~l~gl~~L~--~~~~~~~~~----~~~i~~~l~~~~~~--------q~~ 94 (262)
T PF14500_consen 32 PDFLSRQEVQVLLDFFCSRLDD---HACVQPALKGLLALV--KMKNFSPES----AVKILRSLFQNVDV--------QSL 94 (262)
T ss_pred HhhccHHHHHHHHHHHHHHhcc---HhhHHHHHHHHHHHH--hCcCCChhh----HHHHHHHHHHhCCh--------hhh
Confidence 4458888889999999887643 344555555444322 222233333 12222233334442 122
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHHhcCCCCCCCCCcccchhHHH
Q 003723 101 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180 (800)
Q Consensus 101 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L~~~~~~~~~~~~~~~~~k~k 180 (800)
..+.|..+-.+|..| +.++... ++ .+++-++..+++.... -+++|--
T Consensus 95 ~q~~R~~~~~ll~~l-----------------~~~~~~~------l~--~~~~~fv~~~i~~~~g--------EkDPRnL 141 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSL-----------------LENHREA------LQ--SMGDDFVYGFIQLIDG--------EKDPRNL 141 (262)
T ss_pred hHHHHHHHHHHHHHH-----------------HHHhHHH------HH--hchhHHHHHHHHHhcc--------CCCHHHH
Confidence 557899999999998 4443221 10 3444456666654221 2345544
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHhh--hhc-ccCCCCCcchHHHHHHHHHHhhccC--CcchHHHHHHHHHHhhc
Q 003723 181 FGVLMAYGGLQEFLREQKSEFTANLVRSRV--LPL-YSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQ 255 (800)
Q Consensus 181 dgaL~~vg~La~~l~~~~~~~~e~fl~~~V--lP~-l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~v~~~ll~~L~ 255 (800)
=-++.++-.+..... -.++.+.++...- +|- |+.....|+ +-.+-.+-..++.|+ ++....-+++.++..|.
T Consensus 142 l~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~-~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~ 218 (262)
T PF14500_consen 142 LLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPY-GITREDLKRALRNCLSSTPLFAPFAFPLLLEKLD 218 (262)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCC-CCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHc
Confidence 444444333332221 1234444433221 332 332111232 323345555566663 45666789999999998
Q ss_pred cCCCCCCCCccchhhHHHHHHHhhhc-C--CCCccHHHHHHHH
Q 003723 256 MLDKGDTSCYPVRASAAGAIVGLLEN-D--YMPPEWYPLLQVI 295 (800)
Q Consensus 256 ~~~~~~~~~lpVrv~AA~AL~~~l~~-~--~l~p~l~~ll~~L 295 (800)
++. ..||..+..+|...++. + .+.||+.++-+.|
T Consensus 219 s~~------~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 219 STS------PSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred CCC------cHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 876 77999999999988774 2 5777777777664
No 160
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=23.12 E-value=1.9e+02 Score=25.83 Aligned_cols=56 Identities=18% Similarity=0.040 Sum_probs=44.6
Q ss_pred CCcchHHHHHHHHHHhhcc---CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHh
Q 003723 219 CLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 278 (800)
Q Consensus 219 ~~p~LrarA~~~l~~f~~~---l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~ 278 (800)
.|=-||-.|..+++..... ..+....++...+.+.|.|++ ..++.+.-|..+|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~----~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK----KPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHH
Confidence 3557888888888888775 235677789999999999887 3688888898888877
No 161
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=22.57 E-value=1e+03 Score=26.04 Aligned_cols=99 Identities=22% Similarity=0.088 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHH--HHHH---HhhhhcccCC------CCCcchHHHHHHHHHHhhccCCc----
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTA--NLVR---SRVLPLYSVS------VCLPYLVASANWILGELASCLPE---- 240 (800)
Q Consensus 176 ~~k~kdgaL~~vg~La~~l~~~~~~~~e--~fl~---~~VlP~l~~~------s~~p~LrarA~~~l~~f~~~l~~---- 240 (800)
..+.+-+|+.++|-+.-+.......+.+ ..+. ..+.|.-.+. .+.+-+.+.|+.--+-+...++.
T Consensus 144 ~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~ 223 (309)
T PF05004_consen 144 SPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE 223 (309)
T ss_pred chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4567788888888665443221111110 1111 2222332211 23467888888666666666665
Q ss_pred chHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhh
Q 003723 241 DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 241 ~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~ 280 (800)
..+...++.+...|..++ +-||+.|+.||.-+.+
T Consensus 224 ~~~~~~~~~l~~lL~s~d------~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 224 DLLEEALPALSELLDSDD------VDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHH
Confidence 334556777888887776 9999999999998865
No 162
>PF14003 YlbE: YlbE-like protein
Probab=22.51 E-value=61 Score=27.18 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=21.2
Q ss_pred HHHHHhhhCccccccccCcHHHHHHHHHh
Q 003723 761 VASSIERYHNVIMQGQTLSSQLISKFLKA 789 (800)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 789 (800)
+..+| +.+|.|||.-+.-++-+..|-..
T Consensus 4 l~~fi-R~~P~WYR~LsR~P~~l~~fe~~ 31 (65)
T PF14003_consen 4 LRQFI-REQPIWYRILSRNPEELEAFEKE 31 (65)
T ss_pred HHHHH-HHCcHHHHHHccCHHHHHHHHHH
Confidence 55667 89999999888866666666543
No 163
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=22.40 E-value=60 Score=39.22 Aligned_cols=69 Identities=29% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHhhhcccCCCCCCccccccccCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhccccccccCCCCCCcccccccc
Q 003723 670 VQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIEL 749 (800)
Q Consensus 670 ~~~~e~~~~~~~~~~~~~~~~d~d~~~~d~~~~~~~~d~de~~e~~~eyle~l~~~a~~~~~~~~~d~~~~~d~~eE~~l 749 (800)
++++.+++..+.|-++++-.++||.+.++.++++..+++|+.. ..+.+++.++.+..+|++.
T Consensus 195 ke~k~~~~~~eqe~dd~~m~~~Ee~e~e~~e~~e~~~~~~~sg------------------s~~~~e~e~e~~~~de~~e 256 (822)
T KOG2141|consen 195 KERKKKKEKEEQELDDDGMEGEEEFEDEESEDSESGDEEDDSG------------------SEDEDESEDEKDSVDEEEE 256 (822)
T ss_pred hHHHHHHhhhhhhhhccCCcccccccccccccccccccccccc------------------Ccccchhhhhccchhhhhh
Q ss_pred CCccchh
Q 003723 750 GSLDEVD 756 (800)
Q Consensus 750 spLD~v~ 756 (800)
+-.|++|
T Consensus 257 ~~~~~~d 263 (822)
T KOG2141|consen 257 SEEDNED 263 (822)
T ss_pred hhhcccC
No 164
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=22.30 E-value=29 Score=42.48 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHH
Q 003723 443 EELKLSELLLVWADLI 458 (800)
Q Consensus 443 l~~~v~ef~~~~~~ll 458 (800)
|+.++..+|.-+|+|-
T Consensus 239 ~k~r~~~i~~klC~l~ 254 (713)
T PF03344_consen 239 LKKRMVKIYEKLCELT 254 (713)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 4455555566555554
No 165
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.06 E-value=4.8e+02 Score=24.05 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=54.3
Q ss_pred HhhhhcccC---CCCCcchHHHHHHHHHHhhcc--CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC
Q 003723 208 SRVLPLYSV---SVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 282 (800)
Q Consensus 208 ~~VlP~l~~---~s~~p~LrarA~~~l~~f~~~--l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~ 282 (800)
..|+|.+.. .+..+=+|+-|.=++++++.. ++++.+..+++.+++...... . .-.|-.+|-.+++..
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~------~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQET------V--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccch------h--HHHHHHHHHHHHHcc
Confidence 455666542 145667889899999999997 778888888888888876553 2 556777777777654
Q ss_pred -CCCccHHHHHHHHHH
Q 003723 283 -YMPPEWYPLLQVIVG 297 (800)
Q Consensus 283 -~l~p~l~~ll~~Ll~ 297 (800)
.....=...+..+.+
T Consensus 77 ~~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 77 ENVDSLPRKVFKALLK 92 (121)
T ss_pred cccccCCHHHHHHHHc
Confidence 322222444555444
No 166
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.81 E-value=3.5e+02 Score=34.92 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=73.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh-hc-ch-hH--HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc--CCcchHHHH
Q 003723 174 SRIQKDYFGVLMAYGGLQEFLRE-QK-SE-FT--ANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADV 246 (800)
Q Consensus 174 ~~~~k~kdgaL~~vg~La~~l~~-~~-~~-~~--e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~v 246 (800)
.+....+-+++-+.|.+.....+ .. .+ +. ..-+..++.-.+. .-++|.|.|+..+..+.... .|......+
T Consensus 323 ~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~--Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV 400 (1251)
T KOG0414|consen 323 SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLL--DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEV 400 (1251)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHccCCCccHHHHH
Confidence 45678888888888886644322 10 11 11 1123444444466 57899999999999987665 788889999
Q ss_pred HHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhc
Q 003723 247 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281 (800)
Q Consensus 247 ~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~ 281 (800)
...++.+|.|.+ ..||=.|+.-+..|+.+
T Consensus 401 ~~la~grl~DkS------slVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 401 LELAIGRLEDKS------SLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred HHHHhccccccc------HHHHHHHHHHHHHHHhc
Confidence 999999999987 89999999999999764
No 167
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=21.80 E-value=1.1e+02 Score=20.66 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhhccCCcchHHHHHHHHHHhhc
Q 003723 223 LVASANWILGELASCLPEDISADVYSSLLKALQ 255 (800)
Q Consensus 223 LrarA~~~l~~f~~~l~~~~l~~v~~~ll~~L~ 255 (800)
+|..|.|.+|++.+ .+.++.++++|.
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhc
Confidence 57888999999876 456666666665
No 168
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=21.80 E-value=77 Score=22.63 Aligned_cols=28 Identities=29% Similarity=0.184 Sum_probs=22.9
Q ss_pred HHHHHHHhhccCCCCCCCCccchhhHHHHHHHhh
Q 003723 246 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 279 (800)
Q Consensus 246 v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l 279 (800)
+++.++++|..++ ..|+-.|+.||.++.
T Consensus 13 ~i~~L~~ll~~~~------~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSED------EEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCC------HHHHHHHHHHHHHHc
Confidence 5777888887554 889999999999874
No 169
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=21.42 E-value=76 Score=35.20 Aligned_cols=9 Identities=0% Similarity=-0.012 Sum_probs=3.5
Q ss_pred CchhhhHHH
Q 003723 627 LSLESEIKL 635 (800)
Q Consensus 627 ~~~~~D~Kl 635 (800)
|+...||-|
T Consensus 12 Yk~~k~K~V 20 (324)
T PF05285_consen 12 YKKSKDKGV 20 (324)
T ss_pred HHhhhhhHH
Confidence 333344433
No 170
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=21.03 E-value=4.6e+02 Score=32.08 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHHHHHhhhhcccC--CCCCcchHHHHHHHHHHhhccCCcch-HHHHHHHHHHh-hccCCCCCCCCccchhhHHHHHHHh
Q 003723 203 ANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDI-SADVYSSLLKA-LQMLDKGDTSCYPVRASAAGAIVGL 278 (800)
Q Consensus 203 e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~-l~~v~~~ll~~-L~~~~~~~~~~lpVrv~AA~AL~~~ 278 (800)
...+.++|+|.+-. ......++-++...+..+++.++-.. -+.+++.+.+. +...+ ++||+-++.|++.+
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~------~~vkvn~L~c~~~l 456 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN------LYVKVNVLPCLAGL 456 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc------hHHHHHHHHHHHHH
Confidence 45788899998863 25678999999999999999887433 33455555443 33444 99999999999999
Q ss_pred hhc
Q 003723 279 LEN 281 (800)
Q Consensus 279 l~~ 281 (800)
++.
T Consensus 457 ~q~ 459 (700)
T KOG2137|consen 457 IQR 459 (700)
T ss_pred HHH
Confidence 964
No 171
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.12 E-value=3e+02 Score=25.56 Aligned_cols=76 Identities=22% Similarity=0.105 Sum_probs=43.7
Q ss_pred HHHHHHHhhccCCCCCCCCccchhhHHH-HHHHhhhcC-----CCCccHHHHHHHHHHhhcccc--cchH-HHHHHHHHH
Q 003723 246 VYSSLLKALQMLDKGDTSCYPVRASAAG-AIVGLLEND-----YMPPEWYPLLQVIVGRIGYED--EENS-ILFELLSSV 316 (800)
Q Consensus 246 v~~~ll~~L~~~~~~~~~~lpVrv~AA~-AL~~~l~~~-----~l~p~l~~ll~~Ll~~l~~e~--~e~e-~l~~~L~~i 316 (800)
++.-++..|..++ +-+-|..+|. +...+|+.. .+..+...+++.|+. |.+.. ...+ .=.++|-.+
T Consensus 4 YlrDll~~L~~~~-----~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~-L~~~f~~~~Fe~~R~~alval 77 (114)
T PF10193_consen 4 YLRDLLEYLRSDD-----EDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLH-LQNKFDIENFEELRQNALVAL 77 (114)
T ss_dssp -HHHHHHHHT-----------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH----TT--TTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhcCc-----CCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhh-ccccCCccCHHHHHHHHHHHH
Confidence 3455566666443 1366666665 788888853 467788899999999 88865 2233 344777777
Q ss_pred HHhhhhhhcch
Q 003723 317 VGAANENVADH 327 (800)
Q Consensus 317 V~~~~e~l~p~ 327 (800)
+-...+.++||
T Consensus 78 ~v~~P~~~~~~ 88 (114)
T PF10193_consen 78 VVAAPEKVAPY 88 (114)
T ss_dssp HHHSGGGHHH-
T ss_pred HHHhhHHHHHH
Confidence 77777777664
Done!