Query 003723
Match_columns 800
No_of_seqs 240 out of 622
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 18:54:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003723.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1769-1773//hhsearch_pdb/003723hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 1.0 1 1 484.3 39.5 520 1-663 285-865 (960)
2 3m1i_C Exportin-1; heat repeat 1.0 1 1 187.8 18.7 265 25-343 357-645 (1049)
3 2x1g_F Cadmus; transport prote 1.0 1 1 178.8 28.1 259 24-345 365-643 (971)
4 4fdd_A Transportin-1; heat rep 1.0 1 1 167.3 42.5 505 24-649 268-788 (852)
5 2x19_B Importin-13; nuclear tr 1.0 1 1 166.2 33.7 256 25-346 353-628 (963)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 112.6 29.9 247 24-343 278-554 (861)
7 3ibv_A Exportin-T; karyopherin 1.0 1 1 111.6 27.2 265 25-345 345-658 (980)
8 1qgr_A Protein (importin beta 1.0 1 1 108.0 29.7 112 176-299 341-460 (876)
9 4hat_C Exportin-1; heat repeat 1.0 1 1 105.2 17.3 266 25-343 357-645 (1023)
10 1ibr_B P95, importin beta-1 su 1.0 1 1 82.9 11.3 90 204-302 89-184 (462)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=484.27 Aligned_cols=520 Identities=14% Similarity=0.115 Sum_probs=412.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 93238999999984001246756678999999999999753683311220--0199989997522555782018447359
Q 003723 1 MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVS--PHFSVLLDKAIFPALVLNEKDISEWEED 78 (800)
Q Consensus 1 ~p~il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~kll~--p~l~~Ll~~vIfP~l~~teeD~Elwe~D 78 (800)
++.|++.+++++.. + +..+..++++.++++|+.++++.+.+|++++ |++..|++.+|+|+|+++++|+++|++|
T Consensus 285 ~~~~~~~~~~~l~~--~--~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~d 360 (960)
T 1wa5_C 285 INEFIQITWNLLTS--I--SNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDD 360 (960)
T ss_dssp HHHHHHHHHHHHHH--C--CSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTC
T ss_pred HHHHHHHHHHHHHH--C--CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 99999999999984--3--7776728999999999999968676899876851899999999687348888789988449
Q ss_pred HHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HH
Q ss_conf 9999997099822221064443114589999999997603899999998887422222224322246553312357--59
Q 003723 79 ADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--LV 156 (800)
Q Consensus 79 P~EYIr~~~d~~~~~~~g~~ed~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i--~v 156 (800)
|+||||++.| .+|.+|+|++|.++|..| +.++++. .+..+ ++
T Consensus 361 p~e~i~~d~e---------~~d~~s~R~aa~~~L~~l-----------------~~~~~~~----------v~~~~l~~i 404 (960)
T 1wa5_C 361 PIEYIRRDLE---------GSDTDTRRRACTDFLKEL-----------------KEKNEVL----------VTNIFLAHM 404 (960)
T ss_dssp HHHHHHHHHH---------C----CHHHHHHHHHHHH-----------------HHHCHHH----------HHHHHHHHH
T ss_pred HHHHHHHCCC---------CCCCCCCHHHHHHHHHHH-----------------HHHCCHH----------HHHHHHHHH
T ss_conf 9999986357---------551237188999999999-----------------9970132----------789999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHCCCCCCC---CCCHHH
Q ss_conf 99871299998988755620577989999999898888632222--------3899899963310257899---740379
Q 003723 157 LPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSE--------FTANLVRSRVLPLYSVSVC---LPYLVA 225 (800)
Q Consensus 157 ~~~L~~~~~~~~~~~~~~~~~k~kdgaL~~ig~La~~l~~~~~~--------~~e~fl~~~VlP~l~~~s~---~p~Lra 225 (800)
.+.+++|...+ ..+|+.||||++++|++++.+...+++ -.++|+.++|+|+++ ++ +|++|+
T Consensus 405 ~~~l~~~~~~~------~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~--~~~~~~p~vr~ 476 (960)
T 1wa5_C 405 KGFVDQYMSDP------SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT--SNNIPHIILRV 476 (960)
T ss_dssp HHHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH--CSSCSCHHHHH
T ss_pred HHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCCCEEHH
T ss_conf 99998736696------12179999999999999987412567741234435699999997378744--99888833039
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC-------------CCCCCCHHHHH
Q ss_conf 99999998330599211999999999963058999988864123599999984206-------------99995279999
Q 003723 226 SANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-------------DYMPPEWYPLL 292 (800)
Q Consensus 226 rA~~~l~~f~~~~~~~~l~~v~~~il~~L~~~~~~~~~~lpVrv~AA~AL~~li~~-------------~~l~p~i~~ll 292 (800)
||||++|+|++.++++.+..+++.++++|.+++ ++||++||.||.+|+++ ..+.|++++++
T Consensus 477 ~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~------~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 477 DAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 899999998865899999999999999848997------21999999999999844364446654435987564699999
Q ss_pred HHHHHHHCCC-----C-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999962143-----3-132799999999999521221012999999999999986499999982368877999998787
Q 003723 293 QVIVGRIGYE-----D-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 366 (800)
Q Consensus 293 q~Ll~~l~~e-----~-~e~e~L~~~L~~iV~~~~e~i~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~ 366 (800)
+.|+.++... . .+++.++.+|+++++.+++++.||+..+++.|...+.+.+.++.++ .+.++
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~--~~~~~---------- 618 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP--RFTHY---------- 618 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCH--HHHHH----------
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHH----------
T ss_conf 999999971467877643227999999999998888612479999999999999997398972--78899----------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 54434345554200563012226689999999999845312676654458993119989999899898720024788766
Q 003723 367 SWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELK 446 (800)
Q Consensus 367 ~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tiL~~~~~~p~~~~~~s~~~~~~~~~~le~~l~p~i~~i~~~~~~l~~~ 446 (800)
++++|++++ .. ..|+.+..+++.++|++..+ ++++
T Consensus 619 -------------------------~~e~l~~l~------------~~--~~~~~~~~~~~~~~p~~~~i------L~~~ 653 (960)
T 1wa5_C 619 -------------------------TFESIGAIL------------NY--TQRQNLPLLVDSMMPTFLTV------FSED 653 (960)
T ss_dssp -------------------------HHHHHHHHH------------HT--SCGGGHHHHHHHHHHHHHHH------HHTT
T ss_pred -------------------------HHHHHHHHH------------HC--CCCCHHHHHHHHHHHHHHHH------HHHH
T ss_conf -------------------------999999999------------63--89536999999999999999------9860
Q ss_pred HHHHHHHHHHHH------------HHHHHHHHHH--CCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 999999999999------------9669899961--050-8855999963223232110101268888999997224999
Q 003723 447 LSELLLVWADLI------------GDWHAWEETE--DLS-VFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIE 511 (800)
Q Consensus 447 i~ef~~~~~~ll------------~~W~~~~~~~--~~~-~~dy~~el~~~~~~~~L~Nfi~~g~~~~~~~~~~~~~i~~ 511 (800)
+.+|++++++++ .||.+|+.+. +.+ ...|+..+++ +|++|+.+|++.+.+ ++.+++
T Consensus 654 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~L~~~~~~~~~~~~~----~~~~l~ 724 (960)
T 1wa5_C 654 IQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTR-----LLKSFIKTDSSIFPD----LVPVLG 724 (960)
T ss_dssp CTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHH-----HHHHHHHHHGGGCSC----SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCCCHHHHH-----HHHHHHHHCHHHHHH----HHHHHH
T ss_conf 57669999999999997354788999999999809998557787355899-----999999768499999----999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHH-CC-CCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHH
Q ss_conf 999986000124841467668999881-19-99975211001131089999999998660689995116-8999999983
Q 003723 512 GIGAFLSEAILQYPSATWRACSCVHTL-LH-VPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLW-KPVVLAISSC 588 (800)
Q Consensus 512 i~~~~~s~~~~~~~~~~~~~~~~~~~l-~~-i~~~~~~~~~~~~~~~~~i~~~al~rL~~~~~~~~~~~-~~li~vi~~~ 588 (800)
+++.+++++..+ +.........+..+ ++ +.+| ++.++..+++|++. .++..++ ..++.+...+
T Consensus 725 ~~~~~~~~~~~~-~~a~~ll~~i~~~~~~~~~~~y-----------l~~i~~~l~~~l~~--~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 725 IFQRLIASKAYE-VHGFDLLEHIMLLIDMNRLRPY-----------IKQIAVLLLQRLQN--SKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHTCTTTH-HHHHHHHHHHHHHSCHHHHGGG-----------HHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC-CHHHHHHHHHHHHCCHHHHHHH-----------HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_conf 999996799420-3599999999997987778988-----------99999999999831--774749999999999999
Q ss_pred HCCCHHHHHHHHHHCCC-CHHH----HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---H-CCCCCHHHHHH
Q ss_conf 21193899999980596-3299----99999985402898898750456789999999998622---2-27981366899
Q 003723 589 YLCYPAVVEGILKKDED-GGFA----LWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL---L-GLGNPGSSLLQ 659 (800)
Q Consensus 589 l~y~p~~~l~~L~~~~~-~ff~----~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilaL~sLl~~~---p-~l~~~~~~l~~ 659 (800)
++|+|+.++++|+++++ .|+. .|+..+ .++.+.+|||++++|+++|++.. | .+...|+.++.
T Consensus 791 ~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~---------~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~ 861 (960)
T 1wa5_C 791 NKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL---------PTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMN 861 (960)
T ss_dssp HHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHG---------GGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHH
T ss_pred HHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCH---------HHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 87087999999984160589999999853660---------301678989999999999986512230357888999999
Q ss_pred HHHH
Q ss_conf 9999
Q 003723 660 DCYA 663 (800)
Q Consensus 660 ~~~~ 663 (800)
.+..
T Consensus 862 ~i~~ 865 (960)
T 1wa5_C 862 SIIE 865 (960)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 2
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=187.78 Aligned_cols=265 Identities=11% Similarity=0.099 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHHHHHC----CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHCCCCCHHHHCCCCCC
Q ss_conf 78999999999999753----68331122001999899975225557820184473599999997099822221064443
Q 003723 25 QERIISLAFDVISHVLE----TGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 100 (800)
Q Consensus 25 s~~~~~~~l~fL~~~v~----~~~~~kll~p~l~~Ll~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~g~~ed 100 (800)
.+.+...+++|+..+++ .+..++.++|++..|+ .++++.|++.+ |.+.+++||.||+|+..+ .+|
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv-~~ll~~m~~~e-d~~~~~dd~~e~~r~~~~---------d~d 425 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLR-LVIIENMVRPE-EVLVVENDEGEIVREFVK---------ESD 425 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHH-HHHHHTCCCCT-TCCEEECTTSCEEECSSC---------CHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHHHHCCCCC-CEEEEECCCCCCHHHHHC---------CCH
T ss_conf 0899999999999999999746358999999999999-99998658996-200005799850486531---------222
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 11458999999999760389999999888742222222432224655331235759998712999989887556205779
Q 003723 101 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180 (800)
Q Consensus 101 ~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~v~~~L~~~~~~~~~~~~~~~~~k~k 180 (800)
..+.|.++.++|..+ +..++.. ++. ++.+.|+++... ...+|+.+
T Consensus 426 ~~~~~~~~~~~L~~l-----------------~~~~~~~----------~l~--~v~~~l~~~l~~------~~~~W~~~ 470 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYL-----------------THLNVID----------TEE--IMISKLARQIDG------SEWSWHNI 470 (1049)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHCHHH----------HHH--HHHHHHHHHHTS------SSCCHHHH
T ss_pred HHHHHHHHHHHHHHH-----------------HCCCHHH----------HHH--HHHHHHHHHHCC------CCCCHHHH
T ss_conf 799999999999998-----------------8369899----------999--999999987277------87898999
Q ss_pred HHHHHHHHHHHHHHHHH-CCHHH---HHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q ss_conf 89999999898888632-22238---998999633102578-99740379999999983305--9921199999999996
Q 003723 181 FGVLMAYGGLQEFLREQ-KSEFT---ANLVRSRVLPLYSVS-VCLPYLVASANWILGELASC--LPEDISADVYSSLLKA 253 (800)
Q Consensus 181 dgaL~~ig~La~~l~~~-~~~~~---e~fl~~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~--~~~~~l~~v~~~il~~ 253 (800)
||+++++|++++.+.+. .+.+. ..++.+ +|++... .++|.+|.++||++|+|+.. .+++.+..+++.++.+
T Consensus 471 eaal~algsia~~~~~~~e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~ 548 (1049)
T 3m1i_C 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEF 548 (1049)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986023762557999999999998--7765435665499998899999977999986789999999999998
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHH-
Q ss_conf 30589999888641235999999842069----------999527999999999621433-132799999999999521-
Q 003723 254 LQMLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN- 321 (800)
Q Consensus 254 L~~~~~~~~~~lpVrv~AA~AL~~li~~~----------~l~p~i~~llq~Ll~~l~~e~-~e~e~L~~~L~~iV~~~~- 321 (800)
|.+++ .+||..||.|+.+|++.. .+.|++.++++.+...+..-. .+...+++++..++...+
T Consensus 549 l~~~~------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 549 MHETH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp TTSSC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HCCCC------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 61898------789999999999999998898611567787757999999899999858999999999999999975997
Q ss_pred -HHHCCHHHHHHHHHHHHHHHHC
Q ss_conf -2210129999999999999864
Q 003723 322 -ENVADHIPYIVSSLVAAISKHM 343 (800)
Q Consensus 322 -e~i~p~a~~l~~~L~~~f~~~~ 343 (800)
+...++...+++.+.+.|.+.+
T Consensus 623 ~~~~~~~~~~l~~~~~~~~~~~~ 645 (1049)
T 3m1i_C 623 VAERNRLLSDLMQLPNMAWDTIV 645 (1049)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999988999999999
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=178.82 Aligned_cols=259 Identities=13% Similarity=0.150 Sum_probs=192.9
Q ss_pred CCHHHHHHHHHHHHHHHC----------CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHCCCCCHHH
Q ss_conf 678999999999999753----------6833112200199989997522555782018447359999999709982222
Q 003723 24 LQERIISLAFDVISHVLE----------TGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEE 93 (800)
Q Consensus 24 ls~~~~~~~l~fL~~~v~----------~~~~~kll~p~l~~Ll~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~ 93 (800)
..+++...+++|+..+++ .+..|..++|++..|+..++.+..+.++++.+.| |++| |
T Consensus 365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e--~--------- 431 (971)
T 2x1g_F 365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW--SSDD--L--------- 431 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH--H---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CHHH--H---------
T ss_conf 63124587899999999999741331000899999999999999999998619996243356--7757--9---------
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHCCCCCCCCCC
Q ss_conf 10644431145899999999976038999999988874222222243222465533123575--9998712999989887
Q 003723 94 ISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANA 171 (800)
Q Consensus 94 ~~g~~ed~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~--v~~~L~~~~~~~~~~~ 171 (800)
+++.++|+++.++|..+ +..+++. ++..++ +.+.++.|...
T Consensus 432 -----~~f~~~R~~~~~~l~~~-----------------~~~~~~~----------~l~~~~~~l~~~l~~~~~~----- 474 (971)
T 2x1g_F 432 -----ECFRCYRQDISDTFMYC-----------------YDVLNDY----------ILEILAAMLDEAIADLQRH----- 474 (971)
T ss_dssp -----HHHHHHHHHHHHHHHHH-----------------HTTCTTH----------HHHHHHHHHHHHHHHHHHC-----
T ss_pred -----HHHHHHHHHHHHHHHHH-----------------HHHHHHH----------HHHHHHHHHHHHHHHCCCC-----
T ss_conf -----99999999999999999-----------------9997099----------9999999999999734689-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q ss_conf 556205779899999998988886322223899899963310257899740379999999983305--992119999999
Q 003723 172 SHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSS 249 (800)
Q Consensus 172 ~~~~~~k~kdgaL~~ig~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--~~~~~l~~v~~~ 249 (800)
..+|+.+||+++++|++++.+.+...+..+.++. ++|.+....++|.+|.+|||++|+|+.. .+++.+..+++.
T Consensus 475 --~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~--~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~ 550 (971)
T 2x1g_F 475 --PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR--VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINL 550 (971)
T ss_dssp --TTCCHHHHHHHHHHHHTTTC------CHHHHHHH--HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf --8738999999999999983548033477999999--998567653678999999999998788886088989999999
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCC--C-CCHHHHHHHHHHHHHHHH-HH
Q ss_conf 999630589999888641235999999842069--99952799999999962143--3-132799999999999521-22
Q 003723 250 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYE--D-EENSILFELLSSVVGAAN-EN 323 (800)
Q Consensus 250 il~~L~~~~~~~~~~lpVrv~AA~AL~~li~~~--~l~p~i~~llq~Ll~~l~~e--~-~e~e~L~~~L~~iV~~~~-e~ 323 (800)
++++| + .+|+..||.|+..|++.. .+.|+++++++.|+..+.+. . .+...+++++..++...+ ++
T Consensus 551 l~~~l-~--------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~ 621 (971)
T 2x1g_F 551 LVRGL-N--------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE 621 (971)
T ss_dssp HHHHH-H--------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH
T ss_pred HHHHH-C--------HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99874-8--------58899999999999999888623007999999999972789992899999999999997299999
Q ss_pred HCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 1012999999999999986499
Q 003723 324 VADHIPYIVSSLVAAISKHMHP 345 (800)
Q Consensus 324 i~p~a~~l~~~L~~~f~~~~~~ 345 (800)
..|+...+++.+.+.+.+.+..
T Consensus 622 ~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 622 IPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998999999999856
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=167.29 Aligned_cols=505 Identities=12% Similarity=0.121 Sum_probs=293.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHCCCCCHHHHCCCCCCCCC
Q ss_conf 67899999999999975368331122001999899975225557820184473599999997099822221064443114
Q 003723 24 LQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFT 103 (800)
Q Consensus 24 ls~~~~~~~l~fL~~~v~~~~~~kll~p~l~~Ll~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~g~~ed~~s 103 (800)
..+.+...+++|+.++++.+..|+.++|++..++. ++++.|+++++|.+.|+.|++|. +.+ |+ ..+.++
T Consensus 268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p-~ll~~l~~~e~d~~~~~~d~~ed---~~~---dd----~~~~~~ 336 (852)
T 4fdd_A 268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP-VLVNGMKYSDIDIILLKGDVEGG---SGG---DD----TISDWN 336 (852)
T ss_dssp SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHH-HHHHHTSCCHHHHHHHHC----------------------CCCC
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHCCCCCCC---CCC---CC----CCCCCH
T ss_conf 96899999999999986036579887888988999-99987578676799866984432---224---56----401116
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 58999999999760389999999888742222222432224655331235759998712999989887556205779899
Q 003723 104 ARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGV 183 (800)
Q Consensus 104 ~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~v~~~L~~~~~~~~~~~~~~~~~k~kdga 183 (800)
.|.+|...|..| +...++. .+.. +.+.+.+.... .+|+.|++|
T Consensus 337 vr~~a~~~L~~l-----------------a~~~~~~----------~~~~--l~~~l~~~l~~--------~~~~~R~aa 379 (852)
T 4fdd_A 337 LRKCSAAALDVL-----------------ANVYRDE----------LLPH--ILPLLKELLFH--------HEWVVKESG 379 (852)
T ss_dssp HHHHHHHHHHHH-----------------HHHHGGG----------GHHH--HHHHHHHHHTC--------SSHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------HHHCCHH----------HHHH--HHHHHHHHHCC--------CCHHHHHHH
T ss_conf 999999999999-----------------8746187----------8999--99999998559--------988999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999989888863222238998999633102578997403799999999833059----921199999999996305899
Q 003723 184 LMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL----PEDISADVYSSLLKALQMLDK 259 (800)
Q Consensus 184 L~~ig~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~~----~~~~l~~v~~~il~~L~~~~~ 259 (800)
++++|++++...+.-.++.+ -+...+++.+. ++++.+|..|||.+|+++... ....+..+++.++++|.+++
T Consensus 380 ~~alg~i~~~~~~~~~~~l~-~~l~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~- 455 (852)
T 4fdd_A 380 ILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN- 455 (852)
T ss_dssp HHHHHHTTTTTHHHHGGGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-
T ss_pred HHHHHHHHHCCHHHHHHHHH-HHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 99999998635688998799-99999998717--998899999999999999886110478999999999999985898-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHC--CHHHHHHHH
Q ss_conf 9988864123599999984206--9999527999999999621433-1327999999999995212210--129999999
Q 003723 260 GDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVA--DHIPYIVSS 334 (800)
Q Consensus 260 ~~~~~lpVrv~AA~AL~~li~~--~~l~p~i~~llq~Ll~~l~~e~-~e~e~L~~~L~~iV~~~~e~i~--p~a~~l~~~ 334 (800)
..||..|+.||.++++. ..+.|+++++++.|+..+.... .....+..++..++...++.+. +|...+++.
T Consensus 456 -----~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~ 530 (852)
T 4fdd_A 456 -----KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPP 530 (852)
T ss_dssp -----HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf -----889999999999999973676676799999999999988374799999999999999742431367899998899
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCC
Q ss_conf 9999998649999998236887799999878754434345554200563012226689999999999845312---6766
Q 003723 335 LVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTH---IQPL 411 (800)
Q Consensus 335 L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tiL~~~~~~p---~~~~ 411 (800)
|.+.+.. +.+.. + .. ..+++++..+++..+..-. -.... +++.+..+++..+... .+..
T Consensus 531 l~~~~~~-l~d~~-~--~~-~~~~~~l~~i~~~~g~~~~----------~~~~~---i~~~~~~~l~~~l~~~~~~~~~~ 592 (852)
T 4fdd_A 531 LIQKWNM-LKDED-K--DL-FPLLECLSSVATALQSGFL----------PYCEP---VYQRCVNLVQKTLAQAMLNNAQP 592 (852)
T ss_dssp HHHHHHH-SCTTC-T--TH-HHHHHHHHHHHHHHGGGGH----------HHHHH---HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHH-CCCCC-H--HH-HHHHHHHHHHHHHHHHHHH----------HHHHH---HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999873-33046-9--99-9999999999999748679----------88999---99999999999999998753388
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5445-899311998999989989872002478876699999--9999999966989996105088559999632232321
Q 003723 412 ECEV-SAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELL--LVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYEL 488 (800)
Q Consensus 412 ~~s~-~~~~~~~~~le~~l~p~i~~i~~~~~~l~~~i~ef~--~~~~~ll~~W~~~~~~~~~~~~dy~~el~~~~~~~~L 488 (800)
... ++..+.....-..+..++... ..++..++ +.++.++.. .+.+. ..+.-..... .+
T Consensus 593 -~~~~~~d~~~~~~~l~~l~~l~~~l-------~~~~~~~~~~~~~~~~l~~-----~l~~~-~~~vr~~a~~-----~l 653 (852)
T 4fdd_A 593 -DQYEAPDKDFMIVALDLLSGLAEGL-------GGNIEQLVARSNILTLMYQ-----CMQDK-MPEVRQSSFA-----LL 653 (852)
T ss_dssp -TTSCCCCTHHHHHHHHHHHHHHHHH-------GGGGHHHHHTCCHHHHHHH-----HTTCS-SHHHHHHHHH-----HH
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHCCCCHHHHHHH-----HHCCC-CHHHHHHHHH-----HH
T ss_conf -6668876119999999997899987-------4769988367718999999-----83899-8449999999-----99
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHH
Q ss_conf 101012688889999972249999999860001248-4146766899988119999752110011310899999999986
Q 003723 489 KNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQY-PSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRF 567 (800)
Q Consensus 489 ~Nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~i~~~al~rL 567 (800)
.+........+. .|+..++..+...+....... ..+.|.....+..++. ...+++..++...+..+
T Consensus 654 ~~l~~~~~~~~~---~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~----------~~~p~~~~il~~L~~~l 720 (852)
T 4fdd_A 654 GDLTKACFQHVK---PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI----------EMQPYIPMVLHQLVEII 720 (852)
T ss_dssp HHHHHHCGGGTG---GGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG----------GGGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_conf 999998168889---87999999999876942068999999999999997117----------67878999999999985
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 60689995116899999998321193899999980596329999999985402898898750456789999999998622
Q 003723 568 RAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL 647 (800)
Q Consensus 568 ~~~~~~~~~~~~~li~vi~~~l~y~p~~~l~~L~~~~~~ff~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilaL~sLl~~~ 647 (800)
.+ ......++......+......+|..+-..| ..|...|+..+ ++..-..+|.-+.-|++.++...
T Consensus 721 ~~-~~~~~~~~~~a~~~igrl~~~~~~~~~~~l----~~~~~~~~~~l---------~~~~d~~e~~~a~~~l~~li~~~ 786 (852)
T 4fdd_A 721 NR-PNTPKTLLENTAITIGRLGYVCPQEVAPML----QQFIRPWCTSL---------RNIRDNEEKDSAFRGICTMISVN 786 (852)
T ss_dssp TC-SSCCHHHHHHHHHHHHHHHHHCHHHHGGGH----HHHHHHHHHHH---------HTSCSSHHHHHHHHHHHHHHHHC
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHCHHHHCCCH----HHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 79-988720778899999999986889767558----99999999986---------53666079999999999999869
Q ss_pred HC
Q ss_conf 22
Q 003723 648 LG 649 (800)
Q Consensus 648 p~ 649 (800)
|.
T Consensus 787 p~ 788 (852)
T 4fdd_A 787 PS 788 (852)
T ss_dssp GG
T ss_pred HH
T ss_conf 18
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=166.23 Aligned_cols=256 Identities=14% Similarity=0.166 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHHHHCC---------CCCCCCCCCHHHHHHHHHHHCCCCCCHHH-HHHHHHCHHHHHHHCCCCCHHHH
Q ss_conf 789999999999997536---------83311220019998999752255578201-84473599999997099822221
Q 003723 25 QERIISLAFDVISHVLET---------GPGWRLVSPHFSVLLDKAIFPALVLNEKD-ISEWEEDADEYIRKNFPSELEEI 94 (800)
Q Consensus 25 s~~~~~~~l~fL~~~v~~---------~~~~kll~p~l~~Ll~~vIfP~l~~teeD-~Elwe~DP~EYIr~~~d~~~~~~ 94 (800)
.+.+...+++|+..+++. +..++.++|++..|+..+ ++.|++.+++ .+.|++|+
T Consensus 353 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-l~~~~~p~~~~~~~~~~de--------------- 416 (963)
T 2x19_B 353 NETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL-LHKAQFPSDEEYGFWSSDE--------------- 416 (963)
T ss_dssp TCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCHHHHHTSCHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCHHH---------------
T ss_conf 034544129999999999986234445788999999999999999-9998099830226777638---------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHCCCCCCCCCCC
Q ss_conf 064443114589999999997603899999998887422222224322246553312357--599987129999898875
Q 003723 95 SGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--LVLPFLSRFPIPCDANAS 172 (800)
Q Consensus 95 ~g~~ed~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i--~v~~~L~~~~~~~~~~~~ 172 (800)
.+++.+.|.++.++|..+ +...++. ++..+ ++.+.+++|..
T Consensus 417 ---~~~~~~~r~~~~~~L~~~-----------------~~~~~~~----------~l~~~~~~l~~~l~~~~~------- 459 (963)
T 2x19_B 417 ---KEQFRIYRVDISDTLMYV-----------------YEMLGAE----------LLSNLYDKLGRLLTSSEE------- 459 (963)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-----------------HHHHTHH----------HHHHHHHHHHHHHHTCCC-------
T ss_pred ---HHHHHHHHHHHHHHHHHH-----------------HHHCCHH----------HHHHHHHHHHHHHHHCCC-------
T ss_conf ---999999999999999999-----------------9970689----------999999999999972579-------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q ss_conf 56205779899999998988886322223899899963310257899740379999999983305--9921199999999
Q 003723 173 HSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSL 250 (800)
Q Consensus 173 ~~~~~k~kdgaL~~ig~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--~~~~~l~~v~~~i 250 (800)
..+|+.+||+++++|++++.+.+...++...++. +++.+. .++|.+|.++||++|+|+.. .+++.+..+++.+
T Consensus 460 -~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~--~l~~l~--~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l 534 (963)
T 2x19_B 460 -PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG--LIPRIS--ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLV 534 (963)
T ss_dssp -SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH--HGGGSC--CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf -9866799899999999970438224678999999--998579--98589999999999988888875889899999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHHHHHHH-HHH
Q ss_conf 99630589999888641235999999842069--99952799999999962143-3--132799999999999521-221
Q 003723 251 LKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYE-D--EENSILFELLSSVVGAAN-ENV 324 (800)
Q Consensus 251 l~~L~~~~~~~~~~lpVrv~AA~AL~~li~~~--~l~p~i~~llq~Ll~~l~~e-~--~e~e~L~~~L~~iV~~~~-e~i 324 (800)
+++|.+ .+|+..||.|+..+++.. .+.|++.++++.|+..+.+. . .....+.+++..++...+ ++.
T Consensus 535 ~~~l~~--------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 535 LHALGN--------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHTTC--------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 987178--------468999999999999998998776699999999998635789848899999999999962999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0129999999999999864999
Q 003723 325 ADHIPYIVSSLVAAISKHMHPS 346 (800)
Q Consensus 325 ~p~a~~l~~~L~~~f~~~~~~~ 346 (800)
.||...+++.+.+.+..++..+
T Consensus 607 ~~~~~~l~~~l~~~l~~~~~~~ 628 (963)
T 2x19_B 607 LKNLHSLISPYIQQLEKLAEEI 628 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999989999999998278
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=112.57 Aligned_cols=247 Identities=17% Similarity=0.238 Sum_probs=166.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCC---------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHCCC
Q ss_conf 6789999999999997536833---------------1122001999899975225557820184473599999997099
Q 003723 24 LQERIISLAFDVISHVLETGPG---------------WRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFP 88 (800)
Q Consensus 24 ls~~~~~~~l~fL~~~v~~~~~---------------~kll~p~l~~Ll~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d 88 (800)
..+.+...+++|+..+++.... .+.+++++..++..+ +.. +++.+++ +
T Consensus 278 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-l~~--l~~~~~d--------------~ 340 (861)
T 2bpt_A 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL-LNL--LTRQNED--------------P 340 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH-HHH--TTCCCCC---------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHH--HHHCCCC--------------C
T ss_conf 7278999999999999987886433321035773256999999998899999-999--8706653--------------0
Q ss_pred CCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 82222106444311458999999999760389999999888742222222432224655331235759998712999989
Q 003723 89 SELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCD 168 (800)
Q Consensus 89 ~~~~~~~g~~ed~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~v~~~L~~~~~~~~ 168 (800)
++|.+++|.+|...|..+ +...++. .+.. +.+.+.+....
T Consensus 341 ---------~d~~~~~r~~a~~~L~~l-----------------~~~~~~~----------~~~~--l~~~l~~~l~~-- 380 (861)
T 2bpt_A 341 ---------EDDDWNVSMSAGACLQLF-----------------AQNCGNH----------ILEP--VLEFVEQNITA-- 380 (861)
T ss_dssp ---------CCCCCHHHHHHHHHHHHH-----------------HHHHGGG----------GHHH--HHHHHHHHTTC--
T ss_pred ---------CCCCCCHHHHHHHHHHHH-----------------HHHCCHH----------HHHH--HHHHHHHHCCC--
T ss_conf ---------124686899999999999-----------------9874086----------8999--99999987579--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCH
Q ss_conf 887556205779899999998988886-3222238998999633102578997403799999999833059-----9211
Q 003723 169 ANASHSRIQKDYFGVLMAYGGLQEFLR-EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-----PEDI 242 (800)
Q Consensus 169 ~~~~~~~~~k~kdgaL~~ig~La~~l~-~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~~-----~~~~ 242 (800)
.+|+.+++++.++|+++.... +.-.++.+ -+...+++.+. .+++.+|.+|+|++|+++... +...
T Consensus 381 ------~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 381 ------DNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp ------SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred ------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf ------972699999999999985998788899899-99999998828--995999999999999999873540487888
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHCCCCC-C--HHHHHHHH
Q ss_conf 999999999963058999988864123599999984206------99995279999999996214331-3--27999999
Q 003723 243 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN------DYMPPEWYPLLQVIVGRIGYEDE-E--NSILFELL 313 (800)
Q Consensus 243 l~~v~~~il~~L~~~~~~~~~~lpVrv~AA~AL~~li~~------~~l~p~i~~llq~Ll~~l~~e~~-e--~e~L~~~L 313 (800)
+..+++.++++|.++ ..||..|+.|+..+++. ..+.|++++++..|+..+..... + -.....++
T Consensus 452 ~~~~l~~l~~~l~~~-------~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 452 LPGVVQACLIGLQDH-------PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp HHHHHHHHHHHHTSC-------HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999999999976447-------2899999999999998623135424689999999999999857586158999999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 999995212210129999999999999864
Q 003723 314 SSVVGAANENVADHIPYIVSSLVAAISKHM 343 (800)
Q Consensus 314 ~~iV~~~~e~i~p~a~~l~~~L~~~f~~~~ 343 (800)
..++...++++.||...+++.+...+.+.+
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTM 554 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999997626569999999999999999887
No 7
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=111.60 Aligned_cols=265 Identities=15% Similarity=0.090 Sum_probs=173.1
Q ss_pred CHHHHHHHHHHHHHHHCC------CC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHCCCCCHHHHCCC
Q ss_conf 789999999999997536------83-31122001999899975225557820184473599999997099822221064
Q 003723 25 QERIISLAFDVISHVLET------GP-GWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGW 97 (800)
Q Consensus 25 s~~~~~~~l~fL~~~v~~------~~-~~kll~p~l~~Ll~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~g~ 97 (800)
.+.+...++.|+...++. .. ....++|++..|+.. ++.-|.+.+++ .|.+| .|. +|
T Consensus 345 ~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~-li~k~~yp~d~--~~~~~--------~d~--ed---- 407 (980)
T 3ibv_A 345 YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEA-IIKKMKYDESQ--EWDDD--------PDS--EE---- 407 (980)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH-HHHTTSCCTTC--CCCCC--------SSS--ST----
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHCCCCCCC--CCCCC--------CCH--HH----
T ss_conf 063999999999999999872442234337899999999999-99872289865--66666--------555--47----
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHCCCCCCCCCCCCCC
Q ss_conf 443114589999999997603899999998887422222224322246553312357--599987129999898875562
Q 003723 98 REDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--LVLPFLSRFPIPCDANASHSR 175 (800)
Q Consensus 98 ~ed~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i--~v~~~L~~~~~~~~~~~~~~~ 175 (800)
.+++..-|.....++..+ ..-++.. .+..+ .+.+.+++...+. ...
T Consensus 408 ~~~F~e~Rk~l~~l~d~~-----------------~~l~~~~----------~l~~~~~~i~~~l~~~l~~~-----~~~ 455 (980)
T 3ibv_A 408 EAEFQEMRKKLKIFQDTI-----------------NSIDSSL----------FSSYMYSAITSSLSTAATLS-----PEN 455 (980)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HHHCHHH----------HHHHHHHHHHHHHHHHTTSC-----HHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------------HHCCHHH----------HHHHHHHHHHHHHHHHHCCC-----CCC
T ss_conf 999999999999999999-----------------9648498----------88889999999999871555-----899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCHHH
Q ss_conf 05779899999998988886322---------223899899963310257899740379999999983305--9921199
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQK---------SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISA 244 (800)
Q Consensus 176 ~~k~kdgaL~~ig~La~~l~~~~---------~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--~~~~~l~ 244 (800)
+|+..|++|+++|++++.+.... .+....++.+.+-.... ..+||.+|..+||++|+|+.. ..++.+.
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~-~~~hp~V~~~~~~~l~rys~~~~~~~~~l~ 534 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVC-RHPHPLVQLLYMEILVRYASFFDYESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTT-TCCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 8799999999999987653431236675521068999999999847888-899789999999999999999851935499
Q ss_pred HHHHHHHH--HHCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCC-----CC----------
Q ss_conf 99999999--630589999888641235999999842069--999527999999999621433-----13----------
Q 003723 245 DVYSSLLK--ALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYED-----EE---------- 305 (800)
Q Consensus 245 ~v~~~il~--~L~~~~~~~~~~lpVrv~AA~AL~~li~~~--~l~p~i~~llq~Ll~~l~~e~-----~e---------- 305 (800)
.+++.++. .+.+++ ..||..||.|+.+|++.. .+.|++.++++.+-.++.... .|
T Consensus 535 ~~L~~ll~~~gl~~~~------~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTN------ERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp HHHHHHTSTTTTTCCC------TTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred HHHHHHHCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
T ss_conf 9999982600266997------6599999999999999866874458999999999861686788875322221045420
Q ss_pred -------HHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf -------2799999999999521---221012999999999999986499
Q 003723 306 -------NSILFELLSSVVGAAN---ENVADHIPYIVSSLVAAISKHMHP 345 (800)
Q Consensus 306 -------~e~L~~~L~~iV~~~~---e~i~p~a~~l~~~L~~~f~~~~~~ 345 (800)
--+|++++..++...+ ++...+...+++.|.+.+.+.+..
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~ 658 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSS 658 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36771478899999999992789987899999999999999999998864
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=107.97 Aligned_cols=112 Identities=13% Similarity=-0.019 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q ss_conf 05779899999998988886322223899899963310257899740379999999983305992----11999999999
Q 003723 176 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE----DISADVYSSLL 251 (800)
Q Consensus 176 ~~k~kdgaL~~ig~La~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~~~~----~~l~~v~~~il 251 (800)
+|+.+.++..+++.++..+.+ .... .+..++...++ ++.+..|..|++.+|.++....+ ..+.++++.++
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCH---HHHH-HHHHHHHHHCC--CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 217999999999999987758---6699-99999998846--99828999999999999748877789999999999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC--C--CCCCHHHHHHHHHHHH
Q ss_conf 9630589999888641235999999842069--9--9952799999999962
Q 003723 252 KALQMLDKGDTSCYPVRASAAGAIVGLLEND--Y--MPPEWYPLLQVIVGRI 299 (800)
Q Consensus 252 ~~L~~~~~~~~~~lpVrv~AA~AL~~li~~~--~--l~p~i~~llq~Ll~~l 299 (800)
++|.|++ ..||..|+.++.+++... . ..+++.+++..|+..+
T Consensus 415 ~~l~d~~------~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l 460 (876)
T 1qgr_A 415 ELMKDPS------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (876)
T ss_dssp HHHTCSS------HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT
T ss_pred HHHCCCC------HHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHH
T ss_conf 9867997------899999999999999857201144777999999999987
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=105.22 Aligned_cols=266 Identities=11% Similarity=0.097 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHCCCCCHHHHCCCCCC
Q ss_conf 789999999999997536----8331122001999899975225557820184473599999997099822221064443
Q 003723 25 QERIISLAFDVISHVLET----GPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 100 (800)
Q Consensus 25 s~~~~~~~l~fL~~~v~~----~~~~kll~p~l~~Ll~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~g~~ed 100 (800)
...+...+++|.....+. +..+..++|.+..|+..+ +..|.+.+++. .+++|-.+++|.... +.|+ .+.
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vl-i~km~~P~e~~-ive~d~~~~~~e~~~-d~d~----~~~ 429 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVI-IENMVRPEEVL-VVENDEGEIVREFVK-ESDT----IQL 429 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHH-HHSCCCCTTCC-EEECTTSCEEECSSC-CGGG----HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCC-CCCCCCCCHHHHHCC-CHHH----HHH
T ss_conf 2889999999999999999856578888999999999999-98657982026-677888608887144-5588----999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 11458999999999760389999999888742222222432224655331235759998712999989887556205779
Q 003723 101 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180 (800)
Q Consensus 101 ~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~v~~~L~~~~~~~~~~~~~~~~~k~k 180 (800)
+.+-| +.|..+ +.-.+.. ++. .+.+.|.+.... ...+|+.+
T Consensus 430 f~~~R----d~L~~l-----------------~~l~~~~----------~~~--~~~~~l~~~l~~------~~~~W~~~ 470 (1023)
T 4hat_C 430 YKSER----EVLVYL-----------------THLNVID----------TEE--IMISKLARQIDG------SEWSWHNI 470 (1023)
T ss_dssp HHHHH----HHHHHH-----------------HHHCHHH----------HHH--HHHHHHHHHHSS------TTCCHHHH
T ss_pred HHHHH----HHHHHH-----------------HCCCHHH----------HHH--HHHHHHHHHHCC------CCCCHHHH
T ss_conf 99999----999998-----------------6068789----------999--999999998548------87888999
Q ss_pred HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHCCCC-C--CCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHH
Q ss_conf 89999999898888632-2223899899963310257-8--99740379999999983305--99211999999999963
Q 003723 181 FGVLMAYGGLQEFLREQ-KSEFTANLVRSRVLPLYSV-S--VCLPYLVASANWILGELASC--LPEDISADVYSSLLKAL 254 (800)
Q Consensus 181 dgaL~~ig~La~~l~~~-~~~~~e~fl~~~VlP~l~~-~--s~~p~LrarA~~~l~~f~~~--~~~~~l~~v~~~il~~L 254 (800)
||+++++|++++..... .+++....+. .++..... . .+.+.+|..+||++|+|+.. .+++.+..+++.++..|
T Consensus 471 EA~~~a~gaIa~~~~~~~e~~~l~~vi~-~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l 549 (1023)
T 4hat_C 471 NTLSWAIGSISGTMSEDTEKRFVVTVIK-DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM 549 (1023)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 8999999999768981557888999999-999754103467625999999999999999998616798999999999986
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 0589999888641235999999842069----------999527999999999621433-13279999999999952122
Q 003723 255 QMLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN 323 (800)
Q Consensus 255 ~~~~~~~~~~lpVrv~AA~AL~~li~~~----------~l~p~i~~llq~Ll~~l~~e~-~e~e~L~~~L~~iV~~~~e~ 323 (800)
.+++ ..|...||.|+..+++.. ...|++.++++.+...+..-. .....+..++..+|...+..
T Consensus 550 ~~~~------~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 550 HETH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp TCSC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HCCC------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 1698------7899999999999999988876135777786069999999999988479888999999999999858877
Q ss_pred --HCCHHHHHHHHHHHHHHHHC
Q ss_conf --10129999999999999864
Q 003723 324 --VADHIPYIVSSLVAAISKHM 343 (800)
Q Consensus 324 --i~p~a~~l~~~L~~~f~~~~ 343 (800)
...+...+++.+...|.++.
T Consensus 624 ~~~~~~l~~L~~~~~~~~~~l~ 645 (1023)
T 4hat_C 624 AERNRLLSDLMQLPNMAWDTIV 645 (1023)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4489999999885899999999
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=82.93 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9899963310257899740379999999983305-99211999999999963058--99998886412359999998420
Q 003723 204 NLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQML--DKGDTSCYPVRASAAGAIVGLLE 280 (800)
Q Consensus 204 ~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-~~~~~l~~v~~~il~~L~~~--~~~~~~~lpVrv~AA~AL~~li~ 280 (800)
..+++.+++.+. ++.+.+ ..++.+++.++.. .+......+++.++.++.++ + ..+|..|..++..+++
T Consensus 89 ~~ik~~ll~~l~--~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~------~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 89 REVKNYVLQTLG--TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST------EHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHHHHHTT--CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCC------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCCCHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHHHH
T ss_conf 999999999867--997105-5999999999997665002699999999986267887------8999999999999998
Q ss_pred C---CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6---999952799999999962143
Q 003723 281 N---DYMPPEWYPLLQVIVGRIGYE 302 (800)
Q Consensus 281 ~---~~l~p~i~~llq~Ll~~l~~e 302 (800)
. ..+.+++..+++.++..+.++
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~ 184 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKE 184 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1871534767999999999986799
Done!