BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003724
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 1 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 60
MD +L L A + L LS N K+ +L NL+ L LG N ++ I V+ + +L
Sbjct: 41 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 100
Query: 61 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC------ 114
+ N + +L GIE L +L L +S N I+ + E++ LA+L L +L L GNPL
Sbjct: 101 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 160
Query: 115 -CSRWYRAQVFSYFAHPAKLKVDGKEISTRE 144
+ YR +V P K+DG + E
Sbjct: 161 NATSEYRIEVVKRL--PNLKKLDGMPVDVDE 189
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 1 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 60
MD +L L A + L LS N K+ +L NL+ L LG N ++ I V+ + +L
Sbjct: 40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99
Query: 61 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC------ 114
+ N + +L GIE L +L L +S N I+ + E++ LA+L L +L L GNPL
Sbjct: 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159
Query: 115 -CSRWYRAQVFSYFAHPAKLKVDGKEISTRE 144
+ YR +V P K+DG + E
Sbjct: 160 NATSEYRIEVVKRL--PNLKKLDGMPVDVDE 188
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 11 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL 69
V L L+ + +L + + + HLDL N LR++ A + + C V L +NAL +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV-LQASDNALENV 501
Query: 70 RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 114
G+ NL L+ L + N + + ++ L S P L+ L L+GN LC
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 11 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL 69
V L L+ + +L + + + HLDL N LR++ A + + C V L +NAL +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV-LQASDNALENV 501
Query: 70 RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 114
G+ NL L+ L + N + + ++ L S P L+ L L+GN LC
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 37/135 (27%)
Query: 7 LLPAVETLDLSRNKFAKVDN--LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 64
L AV++LDLS N+ + N L++CVNL+ LVL +N
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQ-----------------------ALVLTSN 86
Query: 65 ALTTLR--GIENLKSLEGLDISYNIISTFSELEF--LASLPYLLNLWLEGNPLCCSRWYR 120
+ T+ +L SLE LD+SYN +S S F L+SL +L L GNP +
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN---LLGNP-----YKT 138
Query: 121 AQVFSYFAHPAKLKV 135
S F+H KL++
Sbjct: 139 LGETSLFSHLTKLQI 153
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 33/133 (24%)
Query: 7 LLPAVETLDLSRNKFAKVDN--LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 64
L AV++LDLS N+ + N L++CVNL+ L L N + +I S
Sbjct: 24 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-------------- 69
Query: 65 ALTTLRGIENLKSLEGLDISYNIISTFSELEF--LASLPYLLNLWLEGNPLCCSRWYRAQ 122
+L SLE LD+SYN +S S F L+SL + LNL GNP +
Sbjct: 70 -------FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF-LNLL--GNP-----YKTLG 114
Query: 123 VFSYFAHPAKLKV 135
S F+H KL++
Sbjct: 115 ETSLFSHLTKLQI 127
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 10 AVETLDLSRNK-FAKVDNL-RKCVNLKHLDLGFNNLRSI--AAFSEVSCHIVKLVLRNNA 65
V+T DLS++K FA + ++ +L+ L L N + I AF ++ H++KL L N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNF 334
Query: 66 LTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 113
L ++ R ENL LE LD+SYN I + FL LP L L L+ N L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQL 383
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +++TLDL+ + V L NL+ L L N + +I+ + ++ ++ L + NN +
Sbjct: 112 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNNQVN 170
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 113
L + NL L L N IS S LASLP L+ + L+ N +
Sbjct: 171 DLTPLANLSKLTTLRADDNKISDISP---LASLPNLIEVHLKDNQI 213
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 IVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 113
I L N +TT+ GI+ L +L GL++ N I+ + L+ +L + L L GNPL
Sbjct: 49 IATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLK---NLTKITELELSGNPL 103
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +++TLDL+ + V L NL+ L L N + +I+ + ++ ++ L + N ++
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVS 164
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 111
L + NL L L N IS S LASLP L+ + L+ N
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNN 205
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 14 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 73
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 72 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 130
Query: 74 NLKSLEGLDISYNIISTFSELEFLASLPYL 103
NL +L L++S N IS S L L SL L
Sbjct: 131 NLTNLNRLELSSNTISDISALSGLTSLQQL 160
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 175 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 233
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASL 100
+ + +L +L LD++ N IS + L L L
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 266
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 14 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 73
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 73 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 131
Query: 74 NLKSLEGLDISYNIISTFSELEFLASLPYL 103
NL +L L++S N IS S L L SL L
Sbjct: 132 NLTNLNRLELSSNTISDISALSGLTSLQQL 161
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 234
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASL 100
+ + +L +L LD++ N IS + L L L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 267
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 5 LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 64
+Q ++ L LS N+ + + L+ L+ L + N L+++ S + +L L NN
Sbjct: 59 MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--SACLSRLFLDNN 116
Query: 65 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 103
L + +LK+LE L I N + + L FL+ L L
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVL 155
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 14 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 73
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 74 NLKSLEGLDISYNIISTFSELEFLASLPYL 103
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 229
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASL 100
+ + +L +L LD++ N IS + L L L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 262
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 14 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 73
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 74 NLKSLEGLDISYNIISTFSELEFLASLPYL 103
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 230
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASL 100
+ + +L +L LD++ N IS + L L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 14 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 73
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 74 NLKSLEGLDISYNIISTFSELEFLASLPYL 103
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 229
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASL 100
+ + +L +L LD++ N IS + L L L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 262
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 14 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 73
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 74 NLKSLEGLDISYNIISTFSELEFLASLPYL 103
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 230
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASL 100
+ + +L +L LD++ N IS + L L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 14 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 73
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 74 NLKSLEGLDISYNIISTFSELEFLASLPYL 103
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 67
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 230
Query: 68 TLRGIENLKSLEGLDISYNIISTFSELEFLASL 100
+ + +L +L LD++ N IS + L L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 33 LKHLDLGFNNLRSIAAFSEVSC-HIVKLVLRNNALTTLRG--IENLKSLEGLDISYNIIS 89
+K LDL FN + I +C ++ L+L+++ + T+ G +L SLE LD+S N +S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 90 TFSELEF--LASLPYLLNLWLEGNP 112
+ S F L+SL Y L L GNP
Sbjct: 88 SLSSSWFGPLSSLKY---LNLMGNP 109
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 33 LKHLDLGFNNLRSIAAFSEVSC-HIVKLVLRNNALTTLRG--IENLKSLEGLDISYNIIS 89
+K LDL FN + I +C ++ L+L+++ + T+ G +L SLE LD+S N +S
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 90 TFSELEF--LASLPYLLNLWLEGNP 112
+ S F L+SL YL L GNP
Sbjct: 114 SLSSSWFGPLSSLKYLN---LMGNP 135
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 11 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE 51
+E LDLS NK K+ + VNLKHLDL FN ++ E
Sbjct: 71 LEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFDALPICKE 110
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 34 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRG----IENLKSLEGLDISY 85
+++D+ N S+AA E ++ L L NN L L ++ +L+ L++S
Sbjct: 146 QNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205
Query: 86 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-----HPAKLKVDGKEI 140
N + + EL+ + L L LWL+GN LC + +R Q +Y + P L++DG E+
Sbjct: 206 NELKSERELDKIKGL-KLEELWLDGNSLCDT--FRDQS-TYISAIRERFPKLLRLDGHEL 261
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNL 568
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 37 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYI 88
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 569
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELING 91
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELING 91
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNL 568
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 41 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYI 92
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELING 91
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELING 91
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG
Sbjct: 45 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELING 94
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG
Sbjct: 46 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELING 95
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG
Sbjct: 46 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELING 95
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG
Sbjct: 40 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELING 89
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG
Sbjct: 46 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELING 95
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELING 91
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 566
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELING 91
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 12/49 (24%)
Query: 8 LPAVETLDLSRNKFAKVDNLRKC--------VNLKHLDLGFNNLRSIAA 48
LP++E LDLSRN + + C ++LK+LDL FN + ++++
Sbjct: 370 LPSLEFLDLSRNGLS----FKGCCSQSDFGTISLKYLDLSFNGVITMSS 414
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 14 LDLSRNKFAKVDNLRKCVN-LKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RG 71
LDL K ++NL ++ +D N +R + F + + L++ NN + + G
Sbjct: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRICRIGEG 82
Query: 72 IEN-LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 130
++ L L L ++ N + +L+ LASL L L + NP+ + YR ++ + P
Sbjct: 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR--LYVIYKVP 140
Query: 131 AKLKVDGKEISTRELWERQ 149
+D +++ +E E +
Sbjct: 141 QVRVLDFQKVKLKERQEAE 159
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 34 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRG----IENLKSLEGLDISY 85
+++D+ N +AA E ++ L L NN L L ++ +L+ L++S
Sbjct: 146 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205
Query: 86 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-----HPAKLKVDGKEI 140
N + + EL+ + L L LWL+GN LC + +R Q +Y + P L++DG E+
Sbjct: 206 NELKSERELDKIKGL-KLEELWLDGNSLCDT--FRDQS-TYISAIRERFPKLLRLDGHEL 261
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 34 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGIENL----KSLEGLDISY 85
+++D+ N +AA E ++ L L NN L L + ++ +L+ L++S
Sbjct: 140 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 199
Query: 86 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLKVDGKEI 140
N + + EL+ + L L LWL+GN LC + ++ S P L++DG E+
Sbjct: 200 NELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 255
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 34 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGIENL----KSLEGLDISY 85
+++D+ N +AA E ++ L L NN L L + ++ +L+ L++S
Sbjct: 140 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 199
Query: 86 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-----HPAKLKVDGKEI 140
N + + EL+ + L L LWL+GN LC + +R Q +Y + P L++DG E+
Sbjct: 200 NELKSERELDKIKGL-KLEELWLDGNSLCDT--FRDQS-TYISAIRERFPKLLRLDGHEL 255
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 279 NYIKNKRSQPHLAESSKYVSGSVQASGDESSTNILESENSYADMPTGLHAYQSFDHIG 336
NY + P + + V S +ES N+ +E Y + T + AY +FD+I
Sbjct: 1437 NYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNIS 1494
>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
Length = 123
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 515 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 569
S GG +G+ + + + +HLL K+ + +RR S +EQ T + EAL+ +NG +
Sbjct: 2 SHGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEQITRTQEEALELINGYIQ 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,455,570
Number of Sequences: 62578
Number of extensions: 913930
Number of successful extensions: 2258
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2181
Number of HSP's gapped (non-prelim): 117
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)