Query 003724
Match_columns 800
No_of_seqs 282 out of 3160
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1859 Leucine-rich repeat pr 100.0 1.9E-81 4.1E-86 707.1 -0.9 765 1-793 179-1048(1096)
2 PF14580 LRR_9: Leucine-rich r 99.6 1.1E-16 2.4E-21 160.5 3.6 147 6-155 16-165 (175)
3 KOG1259 Nischarin, modulator o 99.4 5.7E-14 1.2E-18 149.5 1.2 153 1-153 299-452 (490)
4 PF14580 LRR_9: Leucine-rich r 99.3 2E-12 4.3E-17 130.0 7.2 137 15-154 3-139 (175)
5 KOG0617 Ras suppressor protein 99.1 6E-12 1.3E-16 126.0 -1.6 112 1-114 48-163 (264)
6 KOG4194 Membrane glycoprotein 99.1 1.1E-11 2.3E-16 141.0 -1.6 109 29-140 315-428 (873)
7 KOG0617 Ras suppressor protein 99.1 6E-12 1.3E-16 126.0 -3.6 131 7-141 31-163 (264)
8 KOG0444 Cytoskeletal regulator 99.1 3.3E-11 7.1E-16 137.5 0.5 139 1-143 95-260 (1255)
9 KOG4194 Membrane glycoprotein 99.0 1.1E-10 2.4E-15 132.9 3.0 134 3-140 96-233 (873)
10 KOG0444 Cytoskeletal regulator 99.0 3.8E-11 8.3E-16 137.0 -1.8 138 1-143 47-188 (1255)
11 PLN00113 leucine-rich repeat r 98.9 2.5E-09 5.5E-14 130.5 11.4 135 2-141 86-225 (968)
12 PLN00113 leucine-rich repeat r 98.9 2.4E-09 5.2E-14 130.7 11.1 137 2-142 421-561 (968)
13 KOG1644 U2-associated snRNP A' 98.9 1.8E-09 3.9E-14 110.5 6.0 140 11-153 21-163 (233)
14 KOG0532 Leucine-rich repeat (L 98.9 2E-10 4.3E-15 130.7 -1.2 136 1-144 113-250 (722)
15 KOG0472 Leucine-rich repeat pr 98.9 2.4E-10 5.3E-15 125.9 -0.6 114 1-116 427-543 (565)
16 KOG1259 Nischarin, modulator o 98.8 4.4E-10 9.5E-15 120.3 -1.2 138 7-150 282-421 (490)
17 KOG0472 Leucine-rich repeat pr 98.8 3.5E-10 7.7E-15 124.6 -2.7 134 2-143 176-312 (565)
18 KOG0618 Serine/threonine phosp 98.7 2.4E-09 5.2E-14 127.2 0.9 103 9-114 359-465 (1081)
19 PRK15387 E3 ubiquitin-protein 98.7 4.8E-08 1E-12 117.5 10.9 127 8-146 301-463 (788)
20 KOG4237 Extracellular matrix p 98.7 1.3E-08 2.9E-13 112.3 3.9 89 53-145 273-363 (498)
21 KOG0618 Serine/threonine phosp 98.7 1.9E-09 4.1E-14 128.1 -3.1 135 3-141 377-513 (1081)
22 PRK15387 E3 ubiquitin-protein 98.6 1.2E-07 2.6E-12 114.1 10.2 96 9-116 222-317 (788)
23 PRK15370 E3 ubiquitin-protein 98.6 1.5E-07 3.3E-12 113.2 9.4 100 10-117 263-383 (754)
24 cd00116 LRR_RI Leucine-rich re 98.5 1.2E-07 2.7E-12 99.9 6.2 133 9-143 108-265 (319)
25 KOG0531 Protein phosphatase 1, 98.5 2.3E-08 5E-13 112.1 0.5 110 5-116 91-201 (414)
26 KOG1859 Leucine-rich repeat pr 98.5 3.2E-09 7E-14 123.5 -7.1 134 10-150 165-301 (1096)
27 KOG2123 Uncharacterized conser 98.4 1.6E-08 3.5E-13 107.8 -3.0 117 29-148 17-135 (388)
28 PRK15370 E3 ubiquitin-protein 98.4 5.1E-07 1.1E-11 108.8 9.0 121 9-143 241-382 (754)
29 COG4886 Leucine-rich repeat (L 98.4 1.8E-07 3.8E-12 103.1 3.8 127 10-143 141-292 (394)
30 KOG0531 Protein phosphatase 1, 98.4 8.6E-08 1.9E-12 107.5 1.3 139 7-151 70-209 (414)
31 cd00116 LRR_RI Leucine-rich re 98.4 1.4E-07 3E-12 99.5 2.7 139 4-142 76-235 (319)
32 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 4.9E-12 76.8 2.8 59 54-113 1-61 (61)
33 KOG0532 Leucine-rich repeat (L 98.3 9.2E-08 2E-12 109.5 0.1 113 1-117 136-250 (722)
34 COG4886 Leucine-rich repeat (L 98.3 3E-07 6.4E-12 101.4 2.5 133 4-142 111-246 (394)
35 PLN03150 hypothetical protein; 98.2 2.3E-06 5E-11 101.3 8.6 81 33-114 420-503 (623)
36 PLN03210 Resistant to P. syrin 98.2 7E-06 1.5E-10 103.4 12.6 121 11-138 591-714 (1153)
37 KOG4237 Extracellular matrix p 98.2 9.5E-08 2.1E-12 105.7 -3.5 130 10-143 68-203 (498)
38 PF13855 LRR_8: Leucine rich r 98.2 9.4E-07 2E-11 73.1 3.2 57 32-88 2-61 (61)
39 KOG3207 Beta-tubulin folding c 98.1 6.9E-07 1.5E-11 100.0 0.9 136 7-144 195-342 (505)
40 KOG3207 Beta-tubulin folding c 98.1 9.7E-07 2.1E-11 98.9 1.1 139 5-143 142-316 (505)
41 PLN03150 hypothetical protein; 98.0 1.5E-05 3.4E-10 94.4 9.5 105 10-115 419-529 (623)
42 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 83.3 7.0 117 25-144 13-129 (233)
43 PLN03210 Resistant to P. syrin 98.0 3.6E-05 7.9E-10 97.1 13.0 84 8-92 610-698 (1153)
44 KOG2982 Uncharacterized conser 98.0 1.3E-05 2.9E-10 86.7 7.2 131 54-194 199-334 (418)
45 KOG2739 Leucine-rich acidic nu 97.9 1E-05 2.3E-10 85.8 3.8 112 30-144 42-157 (260)
46 KOG4579 Leucine-rich repeat (L 97.7 1.3E-06 2.8E-11 85.6 -4.9 126 11-142 29-160 (177)
47 PF12799 LRR_4: Leucine Rich r 97.6 4.8E-05 1E-09 60.2 3.5 38 55-92 2-40 (44)
48 PF12799 LRR_4: Leucine Rich r 97.5 7.9E-05 1.7E-09 59.0 2.8 40 9-48 1-41 (44)
49 KOG1909 Ran GTPase-activating 97.4 7.6E-05 1.6E-09 82.2 2.0 141 3-143 86-256 (382)
50 KOG4579 Leucine-rich repeat (L 97.3 2.3E-05 4.9E-10 77.1 -2.2 106 32-143 28-138 (177)
51 KOG4658 Apoptotic ATPase [Sign 97.0 0.00047 1E-08 85.0 3.4 123 10-137 524-651 (889)
52 KOG1909 Ran GTPase-activating 96.9 0.00048 1E-08 76.1 2.5 141 4-144 115-286 (382)
53 KOG2123 Uncharacterized conser 96.9 4.4E-05 9.5E-10 82.1 -5.4 99 8-107 18-123 (388)
54 KOG4658 Apoptotic ATPase [Sign 96.8 0.00094 2E-08 82.4 4.1 105 7-112 543-653 (889)
55 KOG3665 ZYG-1-like serine/thre 96.8 0.001 2.2E-08 80.2 4.3 135 9-143 122-265 (699)
56 KOG3763 mRNA export factor TAP 96.7 0.00044 9.5E-09 80.0 0.5 88 52-142 216-313 (585)
57 KOG2982 Uncharacterized conser 96.6 0.0011 2.4E-08 72.2 2.2 80 8-87 70-157 (418)
58 PRK15386 type III secretion pr 96.3 0.011 2.4E-07 67.5 8.5 74 5-87 48-123 (426)
59 KOG3665 ZYG-1-like serine/thre 96.3 0.0035 7.5E-08 75.7 4.6 109 6-115 145-264 (699)
60 KOG2739 Leucine-rich acidic nu 96.0 0.0061 1.3E-07 65.2 4.0 98 52-151 41-139 (260)
61 COG5238 RNA1 Ran GTPase-activa 95.5 0.016 3.4E-07 62.9 4.9 116 27-142 88-228 (388)
62 PF13306 LRR_5: Leucine rich r 95.1 0.053 1.2E-06 50.0 6.4 101 4-110 7-112 (129)
63 COG5238 RNA1 Ran GTPase-activa 94.9 0.036 7.8E-07 60.2 5.3 142 3-144 86-258 (388)
64 PF13306 LRR_5: Leucine rich r 94.2 0.091 2E-06 48.5 5.7 96 3-104 29-129 (129)
65 PRK15386 type III secretion pr 93.2 0.19 4.2E-06 57.6 7.1 75 27-113 48-124 (426)
66 KOG2120 SCF ubiquitin ligase, 91.0 0.037 7.9E-07 60.8 -1.9 84 27-111 256-348 (419)
67 KOG0473 Leucine-rich repeat pr 89.5 0.01 2.3E-07 63.1 -7.3 87 26-114 37-124 (326)
68 KOG2120 SCF ubiquitin ligase, 84.8 0.12 2.5E-06 57.1 -2.9 107 5-111 256-373 (419)
69 KOG0473 Leucine-rich repeat pr 80.0 0.065 1.4E-06 57.2 -6.8 85 5-89 38-124 (326)
70 PF13504 LRR_7: Leucine rich r 79.1 1.2 2.6E-05 28.7 1.3 12 78-89 3-14 (17)
71 PF00560 LRR_1: Leucine Rich R 78.4 0.82 1.8E-05 31.0 0.4 17 77-93 1-17 (22)
72 PF13504 LRR_7: Leucine rich r 78.1 1.3 2.8E-05 28.5 1.2 9 57-65 4-12 (17)
73 smart00369 LRR_TYP Leucine-ric 77.0 1.9 4E-05 30.0 1.9 18 31-48 2-19 (26)
74 smart00370 LRR Leucine-rich re 77.0 1.9 4E-05 30.0 1.9 18 31-48 2-19 (26)
75 smart00370 LRR Leucine-rich re 76.1 2.5 5.5E-05 29.3 2.4 19 75-93 1-19 (26)
76 smart00369 LRR_TYP Leucine-ric 76.1 2.5 5.5E-05 29.3 2.4 19 75-93 1-19 (26)
77 PF00560 LRR_1: Leucine Rich R 74.5 1.3 2.9E-05 30.0 0.6 16 33-48 2-17 (22)
78 KOG3763 mRNA export factor TAP 72.0 2.8 6E-05 49.7 2.8 75 73-150 215-292 (585)
79 smart00365 LRR_SD22 Leucine-ri 69.7 3.9 8.4E-05 29.4 2.1 20 8-27 1-20 (26)
80 TIGR00864 PCC polycystin catio 67.9 3.8 8.1E-05 56.3 3.0 38 82-120 1-38 (2740)
81 KOG4308 LRR-containing protein 66.8 0.29 6.3E-06 57.1 -6.5 15 101-115 262-276 (478)
82 KOG1947 Leucine rich repeat pr 65.1 2 4.3E-05 48.0 -0.2 62 75-139 242-306 (482)
83 PHA02858 EIF2a-like PKR inhibi 64.4 11 0.00025 34.4 4.5 71 644-719 5-79 (86)
84 smart00365 LRR_SD22 Leucine-ri 56.8 8.7 0.00019 27.7 2.0 15 77-91 3-17 (26)
85 KOG3864 Uncharacterized conser 56.2 1.6 3.5E-05 46.0 -2.7 81 33-114 103-189 (221)
86 KOG4308 LRR-containing protein 54.0 0.51 1.1E-05 55.1 -7.5 141 4-144 110-278 (478)
87 smart00364 LRR_BAC Leucine-ric 50.7 9.7 0.00021 27.6 1.4 18 76-93 2-19 (26)
88 smart00364 LRR_BAC Leucine-ric 47.1 12 0.00027 27.1 1.4 19 54-72 2-20 (26)
89 KOG1947 Leucine rich repeat pr 46.5 13 0.00028 41.6 2.3 129 7-136 186-329 (482)
90 PF13516 LRR_6: Leucine Rich r 37.8 15 0.00032 25.1 0.7 13 76-88 2-14 (24)
91 PF15410 PH_9: Pleckstrin homo 35.7 37 0.00079 32.3 3.2 30 711-740 86-115 (119)
92 smart00368 LRR_RI Leucine rich 27.0 47 0.001 23.8 1.8 12 77-88 3-14 (28)
93 smart00160 RanBD Ran-binding d 23.1 3.6E+02 0.0077 26.2 7.6 103 632-739 10-127 (130)
No 1
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=100.00 E-value=1.9e-81 Score=707.08 Aligned_cols=765 Identities=36% Similarity=0.484 Sum_probs=634.3
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCCCCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCE
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 80 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~ 80 (800)
|+++|..|+.|+.|+|++|+++.+.+|..|+.|++|||++|.++.+|.+...-.+|..|+|++|.++++.++.+|.+|+.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~ 258 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYG 258 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhc
Confidence 57889999999999999999999999999999999999999999999877665679999999999999999999999999
Q ss_pred EEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccC---CCcEEEcCCCCCCchhhHHHHHHHHhhcC
Q 003724 81 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA---HPAKLKVDGKEISTRELWERQLIIARRQK 157 (800)
Q Consensus 81 LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~---sLslL~LDgNpIs~~E~~~a~~l~s~~~~ 157 (800)
|||++|.|..+.++..+..|..|+.|+|.|||++|.|++|..++.++. -+..+.|||..++..++|........+..
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~efwk~~s~~~hr~~ 338 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGREFWKRQSGVSHRSS 338 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchhhhhhhhheecCCC
Confidence 999999999999999999999999999999999999999999999988 67889999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCchhhhhhhhhhhhhccccccccccC--CCCCCCCcCcccccc--cccCCCCChHHHHHHHH
Q 003724 158 RPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEEESTCVG--SDRESVSCDNEIESK--EENVASDDDAEIIDLMS 233 (800)
Q Consensus 158 ~p~~~~~~~P~k~~~~~ed~~~~k~kk~~RL~~I~~ee~ss~~~--SdqqS~s~~~~sss~--ee~~lsd~d~Ei~dlis 233 (800)
.|..|+.++|++.....+..+.++.+++.+++.+.....+.+.. |+.++.+++.+..++ .++.....+..+.+++.
T Consensus 339 ~p~s~~~~S~a~~~~~~dgS~~~s~gki~tl~~ihs~~~s~~v~r~S~~e~at~DpE~~s~~~t~a~~f~q~~pe~el~s 418 (1096)
T KOG1859|consen 339 RPASYGFYSPARSENTSDGSQFRSKGKIYTLASIHSEDESTYVNRISDCESATCDPEESSEINTEAAKFSQEAPEFELIS 418 (1096)
T ss_pred CCCCCCCCCchhccCCCccchhhhcCceeecccccchhhhheeccccccccccCCccccccCCCccccccCCCchhhhcc
Confidence 99999999999999999999999999999999999999888776 788888877775544 34444445555678999
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhcccccCCCccccCccccccchhhhHhhhcCCcccccccccccccccccCCCCccccc
Q 003724 234 RVEHMKRERSILWLREFKEWMDHTSENFVDGSICSGATLMNCEEDNYIKNKRSQPHLAESSKYVSGSVQASGDESSTNIL 313 (800)
Q Consensus 234 ~VE~LKke~s~~WL~ef~Ewmd~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~s~y~~~~~~as~~~~~~n~l 313 (800)
++++++++++..|+|+|+|||+.....+.++.+.+..+..+++ |+.+-+....++.+.++||+.+...+.-..+.+|.+
T Consensus 419 ~~~hl~~~r~vl~lR~~~Ew~~~p~~~~~~~s~~sqpt~seq~-~~tk~rn~p~~e~~g~p~~tp~sl~~~i~~~p~~n~ 497 (1096)
T KOG1859|consen 419 KVEHLKKERSVLWLREFKEWLDSPNEDFMDVSKTSQPTESEQK-YYTKLRNEPLHEGSGTPRYTPGSLHHNISSTPTNNV 497 (1096)
T ss_pred chHHHhhhhhHHHHHHHhhhhcCCchhhccccCCCCCcchhcC-cccccCCCCcccccCCCcCCCCccchhhccCcccch
Confidence 9999999999999999999999999999999999999999998 466666777777779999999999999999999999
Q ss_pred ccCCCccCCcccccccccccccCCcccccCccCCCCccccccccccCCcccccccccccc-------ccccCcCCccccc
Q 003724 314 ESENSYADMPTGLHAYQSFDHIGSLGITGGFSLPGIGRMELRQENEKPYLHDGAGAATVQ-------SKSFHQDTFTIQD 386 (800)
Q Consensus 314 es~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 386 (800)
|..++|.|.-+|+..+|+.....+.-++-....+.-.-.|+||++|. |.+||...+. +.+.+...|++++
T Consensus 498 e~~~~~~~~~~g~~~e~~~e~~et~~et~~e~~~~~~et~ln~~~~~---c~legpp~~~~~~~~l~vss~~l~e~~l~~ 574 (1096)
T KOG1859|consen 498 ELASTFDATITGIKSEANDESGETLYETCTEGEETNQETDLNQKHQL---CTLEGPPDRHEELLRLYVSSSNLQEDPLSD 574 (1096)
T ss_pred hhcccccccccchhhhcccccccccccccccchhhhhhhhcccccee---ccccCCcccchhhheeecccccccccchhh
Confidence 99999999999999999999988888888889999999999999994 4599987766 7788888999999
Q ss_pred cccccccCCCCCccccCcccCCCCCCCCCCCCchhhhHHHHHhhHHHHHHhhccCc----ceeecCCCCCcCCccCCCCC
Q 003724 387 RRMVENIHESPLTPIDDITDAFSSSARPGSPPHYREDILHRRHNLVAEILQLSAES----YSVVSSDSKTSCSDDDFREY 462 (800)
Q Consensus 387 ~~~~~n~~~s~~~~~~~~~~~~~s~~~p~spp~y~~d~l~rr~~l~ee~lq~s~~~----~~v~s~~s~~s~s~~~~~~~ 462 (800)
.+..|||+|+.+ ++.++.+.+.+|+||||||+|+|+||++|++||||++||+ |+|+|+|+.++|+++++++.
T Consensus 575 a~~dE~~~m~tl----ea~q~e~~s~~~sSp~~~~kD~L~~r~~lsl~il~ic~d~~~~~y~v~~~D~~ss~~e~en~ls 650 (1096)
T KOG1859|consen 575 AESDENGNMSTL----EAKQSETGSLTPSSPPHYQKDVLTRRANLSLEILQICADSRSINYSVASSDKQSSCSEVENYLS 650 (1096)
T ss_pred hhhhcccceeee----ecccccccccCCCCCCCccccccccchhHHHHHHHhCcccccccceeecccccchhhhhhhccc
Confidence 999999999999 9999999999999999999999999999999999999999 99999999999999999988
Q ss_pred CCCccccccccCcccccCCcccccccchhhcccCCCCCcccccc--cc-----------c---cCcccCCCCCCCCcccc
Q 003724 463 GPSMLEVDQSINPEHEYSSAEVHSLLNLFEEDHNDQPHEIDCQR--EN-----------C---KNNGFSAGGNDGEVDSS 526 (800)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~-----------~---~~~~f~~~~~~~~~~~~ 526 (800)
+. .+.....+...+++..|++.=--|-+.++-+... |+ + .+.+|..|.|.-+-.+.
T Consensus 651 ~~--------~~~~~eq~~~~rdL~~~r~~i~~C~~cgt~F~~eqp~kg~~~kelr~pd~~k~~t~~v~~~~~s~~~~~~ 722 (1096)
T KOG1859|consen 651 EE--------LESNLEQILLQRDLTENRISIYRCVNCGTQFLIEQPEKGSKIKELRCPDSRKVYTTNVTSGLHSLKPSGG 722 (1096)
T ss_pred Hh--------hhhhHhhhhhhhhhhccccceeeeccccccccccCcccccchhhhcCcchhhcccccccccccccCCccc
Confidence 77 3333445666667766664211222222222222 11 1 37899999999777799
Q ss_pred chhhhhHhHhhc--cccceeeeecccccc--cchhhhhhhhccCCCcCCcccccccccceeeecccccccccccccccc-
Q 003724 527 VNQEAHLLEKNK--RKHTRRVISLLKEQN--TVAKTEALQNLNGNLNISEADNVGEQGKHIFGLNYLLRTSDKKQTREN- 601 (800)
Q Consensus 527 ~~q~~~~~~~~k--~k~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 601 (800)
|||+.+|.+|+- |||++|.+..+++.. -+|+-+..-- +-+|+.+-.--...--++|-+-..--+.+..
T Consensus 723 v~a~~rl~p~~~~~rkp~e~~~ap~~~es~~ci~kg~~shl-------~~ad~s~~~e~~~~rDh~fw~ns~lp~~c~~~ 795 (1096)
T KOG1859|consen 723 VNAEPRLSPKMIVERKPVERLVAPINEESSNCIGKGEASHL-------SDADISDSDEDNTIRDHEFWENSSLPHLCTSH 795 (1096)
T ss_pred eecccccCcchhhhccchhhhccccccccccccCccchhhh-------hhcccCCccccccccccchhccCCCCcccccc
Confidence 999999999987 999999988887755 2222111111 0111111000000000000000000000100
Q ss_pred ---ccccccccCcCccceecccchhhh-HHHhhhccccCCchhhhhccceEE-EEEecCCccccee-------EEEEeec
Q 003724 602 ---AVMTPYISGIGSVAKFLSSVKEDF-VEDYFNKNVADSKSHETCMQYTVC-WILEQDFMHRGRE-------VAVLRSS 669 (800)
Q Consensus 602 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fn~~~a~~~~~e~c~~~~~~-~~~~~~~~~~~~e-------v~~l~ss 669 (800)
+++..-+ ..+|-......| ++.||-+..|.+..-|+|+.|+.| +|+|..+.|.||| ++||++|
T Consensus 796 ~~~~rs~~FL-----e~E~~~~~~e~~q~~~~~paklav~S~~~~c~~~vS~~~i~~~~sTyeqre~~a~~lq~~Ll~~s 870 (1096)
T KOG1859|consen 796 DEVARSKSFL-----ETEFGLLLAEQAQVEELFPAKLAVSSHVETCRSYVSCDVILQICSTYEQRETDAPQLQNVLLLSS 870 (1096)
T ss_pred hhhHHHHHHH-----HHHhhhhhhhhcccccccchhhccCCCCceeEEEecccchhhhhchhhhcCCCchhhhheeeccc
Confidence 1111000 011111112344 778999999999999999999999 9999999999999 9999999
Q ss_pred CCeeEEEEEeeeecCCcccccccccccchhhHHHhhhccceEEEEEe------------------eCCceEEEEeccHHH
Q 003724 670 ENKFYVLLFGVTVDGTGSILNLLGCHKIEDIREVLIGLGLQVLRVST------------------EMGATYLLMTRSIEK 731 (800)
Q Consensus 670 ~~klyvll~~~~~d~~~~~~~~l~~~~~e~~~~v~~g~glq~~r~~~------------------~~~~~~~f~t~~~~~ 731 (800)
|||+||+|++|..|-.++.++++|.|-+.|+|.|.||||+|++++.- --.--++|.+|+++|
T Consensus 871 qd~l~~gl~g~S~~le~sa~s~~c~~~~~d~q~~~~~l~~~~~~Les~~~~~~~~~~~~~~~~~i~hrl~~~f~~~~fkE 950 (1096)
T KOG1859|consen 871 QDKLYVGLVGVSTDLEKSALSALCSHFISDFQDVSVGLGLQKVLLESEATVFQPYKFNYSDFNDIDHRLKLYFYQRKFKE 950 (1096)
T ss_pred ccceeeeeccccchhhhhhcccccccchhhhhhhhhHHHHHHHHHhccchhhhccccccccccchhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999988761 223457899999999
Q ss_pred HHHHh------------------h-----heeeecccccCCc-----cccchhhHH-------HHHHHHhhhcCCcc-ee
Q 003724 732 SRQLF------------------C-----TLQIFYLVSANDK-----CSLRSLEQV-------QVELFEKQICGGLK-VG 775 (800)
Q Consensus 732 ~~~~~------------------~-----~~~~~~~~~~~~~-----~~~~s~e~v-------qv~l~~~~ic~~~~-~~ 775 (800)
+++++ . .+...|.-..--. ||..+.|+| +|.|||+++|++++ +.
T Consensus 951 ~~e~f~~ra~lveG~~~~~~c~l~~~~~~flp~dDaa~sp~~~~~~a~s~~s~edi~p~~~~~~v~l~e~~~ls~lS~l~ 1030 (1096)
T KOG1859|consen 951 DGELFKWRAKLVEGLVVMSNCKLYLMEAFFLPHDDAAKSPYQVVSVAVSRLSAEDILPWKLWGGVVLLEHDMLSTLSLLN 1030 (1096)
T ss_pred hhHHHHHHHHHhcCchhhhhhhhhhhHhhcccccccccCcccccchhhhhhhhhhcCCcCCCCceEEEeccccchHHHHH
Confidence 99996 2 3455565555555 899999999 99999999999999 99
Q ss_pred eeeeeeeeEEecCCCeee
Q 003724 776 IFQYSMVLFWCSEDKVIH 793 (800)
Q Consensus 776 if~y~~~~~~~~~~~~~~ 793 (800)
+|||.-+.|++....+++
T Consensus 1031 ~~q~~pl~~q~~~~~~vs 1048 (1096)
T KOG1859|consen 1031 YLQQIPLPFQSKLNHQVS 1048 (1096)
T ss_pred HHhhCCchhhhhhcccch
Confidence 999999999887766653
No 2
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.63 E-value=1.1e-16 Score=160.46 Aligned_cols=147 Identities=31% Similarity=0.464 Sum_probs=71.8
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCC-CCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc-CC-CCCCCCCEEE
Q 003724 6 QLLPAVETLDLSRNKFAKVDNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GI-ENLKSLEGLD 82 (800)
Q Consensus 6 ~~L~~Le~LdLS~N~Ls~Ip~L~-~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp-~L-~~L~sL~~Ld 82 (800)
.+...+++|+|++|.|+.++.+. .+.+|+.|+|++|.|+.++.+.. ++.|+.|++++|+|+.+. ++ ..+|+|+.|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~-L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPG-LPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccC-hhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34456899999999999999887 58999999999999999986554 699999999999999995 45 4699999999
Q ss_pred ccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchhhHHHHHHHHhh
Q 003724 83 ISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 155 (800)
Q Consensus 83 LS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a~~l~s~~ 155 (800)
|++|+|..+..+..+..+++|+.|+|.+||++..+.||..++..+ |++..||+.+|+..|+..+..+|..+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l--P~Lk~LD~~~V~~~ER~~A~~~f~~~ 165 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL--PSLKVLDGQDVTEEERQEAEKLFKGK 165 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH---TT-SEETTEETTS-B-----------
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc--ChhheeCCEEccHHHhcccccccccc
Confidence 999999999998999999999999999999999999999999888 55557799999999999998887764
No 3
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.40 E-value=5.7e-14 Score=149.49 Aligned_cols=153 Identities=34% Similarity=0.460 Sum_probs=139.2
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCCCCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCE
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 80 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~ 80 (800)
++++...+|.++.|++|.|.|..+.++..|++|+.|+|++|.++.+...-..+.++++|.|+.|.|..+.+++.|.+|..
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvn 378 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVN 378 (490)
T ss_pred hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhhee
Confidence 57788899999999999999999999999999999999999999988766668999999999999999999999999999
Q ss_pred EEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCC-CcEEEcCCCCCCchhhHHHHHHHH
Q 003724 81 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH-PAKLKVDGKEISTRELWERQLIIA 153 (800)
Q Consensus 81 LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~s-LslL~LDgNpIs~~E~~~a~~l~s 153 (800)
||++.|+|..+.++..+++||.|++|.|.+||+...++||..+++.|-. -+.+.||+.+-...+.....++.+
T Consensus 379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~~~ELDTV~Vl~A 452 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGNQQELDTVLVLSA 452 (490)
T ss_pred ccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCCcchhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999887754 467899999888887766655543
No 4
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=2e-12 Score=129.97 Aligned_cols=137 Identities=26% Similarity=0.355 Sum_probs=55.0
Q ss_pred eCCCCCCCCCCCCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCEEEccCCcCCCCchh
Q 003724 15 DLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL 94 (800)
Q Consensus 15 dLS~N~Ls~Ip~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~LdLS~N~IssL~~L 94 (800)
.|..+.|..++.+.++..++.|+|.+|.|+.+......+.+|+.|+|++|.|+.++++..++.|+.|++++|+|+.+.+
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~- 81 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE- 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-
Confidence 4667788888888888899999999999999987665678999999999999999999999999999999999999975
Q ss_pred hhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchhhHHHHHHHHh
Q 003724 95 EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIAR 154 (800)
Q Consensus 95 ~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a~~l~s~ 154 (800)
.....+|+|+.|+|++|.|...... ..+..++.|+.+.|.+||++....++..+++..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred chHHhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 2334689999999999999877554 446789999999999999987766555555443
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.11 E-value=6e-12 Score=126.01 Aligned_cols=112 Identities=22% Similarity=0.238 Sum_probs=65.6
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCC--Cc-CCCCCC
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT--LR-GIENLK 76 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLts--Lp-~L~~L~ 76 (800)
+|+.++.|.+|+.|++++|+|+.+| .+..++.|+.|+++.|++..+|...+.++.|+.|+|++|.+.. +| .|..+.
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 3566667777777777777777765 6666677777777777766666666666666666666666643 33 244444
Q ss_pred CCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCC
Q 003724 77 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 114 (800)
Q Consensus 77 sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs 114 (800)
.|+.|.|+.|.+.-+|+ .++.|++|+.|.++.|.+-
T Consensus 128 tlralyl~dndfe~lp~--dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred HHHHHHhcCCCcccCCh--hhhhhcceeEEeeccCchh
Confidence 44444444444444443 3444444444444444443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-11 Score=141.03 Aligned_cols=109 Identities=28% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCCCCcEEECCCCCCCcccccccc-CCCCcEEEccCCCCCCCc--CCCCCCCCCEEEccCCcCCCCch--hhhhcCCCCC
Q 003724 29 KCVNLKHLDLGFNNLRSIAAFSEV-SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSE--LEFLASLPYL 103 (800)
Q Consensus 29 ~L~nLq~LnLS~N~LssLp~l~~~-L~~L~~LnLS~NkLtsLp--~L~~L~sL~~LdLS~N~IssL~~--L~~L~~LpnL 103 (800)
.++.|++|+|++|+|+.+++..+. +..|++|+|++|+|+.+. .|..+.+|+.|||++|.|+-..+ -..+..|+.|
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 333344444444444433332222 333444444444443331 23344444444444444432211 0233444555
Q ss_pred CEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCC
Q 003724 104 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 140 (800)
Q Consensus 104 r~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpI 140 (800)
+.|.|.+|.+..++ ...|..|+.|+.++|.+|+|
T Consensus 395 rkL~l~gNqlk~I~---krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIP---KRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hheeecCceeeecc---hhhhccCcccceecCCCCcc
Confidence 55555555554332 23344455555555555544
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.07 E-value=6e-12 Score=126.01 Aligned_cols=131 Identities=22% Similarity=0.250 Sum_probs=84.1
Q ss_pred CCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc-CCCCCCCCCEEEcc
Q 003724 7 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 84 (800)
Q Consensus 7 ~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp-~L~~L~sL~~LdLS 84 (800)
.+.+++.|-||.|+++.+| ++..+.+|+.|++.+|+|+.+|..+..++.|+.|+++-|++..+| +|+.+|.|++|||.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 4455666677777777764 677777777777777777777766666677777777777776665 67777777777777
Q ss_pred CCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCC
Q 003724 85 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 141 (800)
Q Consensus 85 ~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs 141 (800)
+|++..-.-...|..+..|+.|+|++|-+.-.| .-+..+..++.+.|.+|.+-
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp----~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILP----PDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCC----hhhhhhcceeEEeeccCchh
Confidence 777653221134445666777777777665443 33445666666666666543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.05 E-value=3.3e-11 Score=137.53 Aligned_cols=139 Identities=26% Similarity=0.324 Sum_probs=103.0
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCcccccccc-CCCCcEEEccCCCCCCCc-CCCCCCC
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEV-SCHIVKLVLRNNALTTLR-GIENLKS 77 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~-L~~L~~LnLS~NkLtsLp-~L~~L~s 77 (800)
||+.+-.|..|+.||||+|++..+| .+..-.++.+|+|++|+|.+||...+. ++.|..|+|++|++..+| .++.|..
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 6888889999999999999999988 888889999999999999999876653 788888999999988875 5777777
Q ss_pred CCEEEccCCcCCC-----Cchh-------------------hhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEE
Q 003724 78 LEGLDISYNIIST-----FSEL-------------------EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 133 (800)
Q Consensus 78 L~~LdLS~N~Iss-----L~~L-------------------~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL 133 (800)
|++|.|++|.+.. +|.+ ..+..|.+|..++|+.|.+...| ..+..+++|+.+
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP----ecly~l~~LrrL 250 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP----ECLYKLRNLRRL 250 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch----HHHhhhhhhhee
Confidence 7777777775432 2211 13444556667777777766554 234456677777
Q ss_pred EcCCCCCCch
Q 003724 134 KVDGKEISTR 143 (800)
Q Consensus 134 ~LDgNpIs~~ 143 (800)
.|++|.|+..
T Consensus 251 NLS~N~iteL 260 (1255)
T KOG0444|consen 251 NLSGNKITEL 260 (1255)
T ss_pred ccCcCceeee
Confidence 7777777643
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.02 E-value=1.1e-10 Score=132.92 Aligned_cols=134 Identities=21% Similarity=0.309 Sum_probs=67.1
Q ss_pred hhcCCCCCCcEEeCCCCCCCCCCCCCCCCC-CcEEECCCCCCCccccc-cccCCCCcEEEccCCCCCCCc--CCCCCCCC
Q 003724 3 ESLQLLPAVETLDLSRNKFAKVDNLRKCVN-LKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSL 78 (800)
Q Consensus 3 esL~~L~~Le~LdLS~N~Ls~Ip~L~~L~n-Lq~LnLS~N~LssLp~l-~~~L~~L~~LnLS~NkLtsLp--~L~~L~sL 78 (800)
+.|.+|++|+.++|.+|.++.||.++.... |+.|+|.+|.|+++... ...++.|+.|+|+.|.|+.++ .+..=.+|
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 456677777777777777777775554432 55555555555554321 112344444444444444442 34344444
Q ss_pred CEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCC
Q 003724 79 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 140 (800)
Q Consensus 79 ~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpI 140 (800)
++|+|+.|+|+.+.. ..|..|.+|..|.|+.|+++..| ..+|..++.|+.++|..|.|
T Consensus 176 ~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp---~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 176 KKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLP---QRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred eEEeecccccccccc-ccccccchheeeecccCcccccC---HHHhhhcchhhhhhccccce
Confidence 444444444444443 34444444444444444444332 23344444444444444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.99 E-value=3.8e-11 Score=136.97 Aligned_cols=138 Identities=25% Similarity=0.257 Sum_probs=120.1
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCC--ccccccccCCCCcEEEccCCCCCCCc-CCCCCC
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR--SIAAFSEVSCHIVKLVLRNNALTTLR-GIENLK 76 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~Ls--sLp~l~~~L~~L~~LnLS~NkLtsLp-~L~~L~ 76 (800)
+|+.|+.|.+|+.|.+++|++..+- .+..|+.|+.+.+..|++. .||+.++.+..|..|+|++|+++.+| ++..-+
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AK 126 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAK 126 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhc
Confidence 6899999999999999999999985 7889999999999999987 58888888999999999999999987 788999
Q ss_pred CCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCch
Q 003724 77 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 77 sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~ 143 (800)
++.+|+||+|+|..+|. ..+.+|+.|-.|+|++|++...| ..+..+..|+.+.|++||+...
T Consensus 127 n~iVLNLS~N~IetIPn-~lfinLtDLLfLDLS~NrLe~LP----PQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPN-SLFINLTDLLFLDLSNNRLEMLP----PQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred CcEEEEcccCccccCCc-hHHHhhHhHhhhccccchhhhcC----HHHHHHhhhhhhhcCCChhhHH
Confidence 99999999999999987 67789999999999999998765 2334456788999999998644
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=2.5e-09 Score=130.45 Aligned_cols=135 Identities=22% Similarity=0.261 Sum_probs=90.3
Q ss_pred chhcCCCCCCcEEeCCCCCCCC-CC-C-CCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCC-Cc-CCCCCC
Q 003724 2 DESLQLLPAVETLDLSRNKFAK-VD-N-LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLK 76 (800)
Q Consensus 2 PesL~~L~~Le~LdLS~N~Ls~-Ip-~-L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLts-Lp-~L~~L~ 76 (800)
|..|..+++|+.|+|++|.+++ +| . +..+++|++|+|++|.++...+. ..+++|+.|+|++|.++. +| .++.++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCC
Confidence 5677888899999999988874 55 3 44778888888888887743222 235777777777777764 34 467777
Q ss_pred CCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCC
Q 003724 77 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 141 (800)
Q Consensus 77 sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs 141 (800)
+|+.|+|++|.+....+ ..+..+++|+.|+|++|.+... .+..+..++.|+.++|.+|.+.
T Consensus 165 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQ---IPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCc---CChHHcCcCCccEEECcCCccC
Confidence 77777777777664433 4566777777777777766532 1133445566666666666654
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=2.4e-09 Score=130.68 Aligned_cols=137 Identities=24% Similarity=0.192 Sum_probs=75.4
Q ss_pred chhcCCCCCCcEEeCCCCCCCCC-C-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCC-c-CCCCCCC
Q 003724 2 DESLQLLPAVETLDLSRNKFAKV-D-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKS 77 (800)
Q Consensus 2 PesL~~L~~Le~LdLS~N~Ls~I-p-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsL-p-~L~~L~s 77 (800)
|..|..++.|+.|+|++|.+++. + .+..+++|+.|+|++|.+....+....+++|+.|+|++|+++.. | .+..+++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence 33444444444555555544442 1 23344555555555555543222222235566666666666543 3 4566667
Q ss_pred CCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCc
Q 003724 78 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 142 (800)
Q Consensus 78 L~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~ 142 (800)
|+.|+|++|.+....+ ..+..+++|+.|+|++|.++... +..+..++.|+.++|.+|.++.
T Consensus 501 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 501 LMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQI---PASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCEEECcCCcceeeCC-hHHcCccCCCEEECCCCcccccC---ChhHhCcccCCEEECCCCcccc
Confidence 7777777777665444 45666777777777777766431 2345556667777777776653
No 13
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.89 E-value=1.8e-09 Score=110.51 Aligned_cols=140 Identities=28% Similarity=0.377 Sum_probs=120.7
Q ss_pred CcEEeCCCCCCCCCCCCCCC-CCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCC-cCCC-CCCCCCEEEccCCc
Q 003724 11 VETLDLSRNKFAKVDNLRKC-VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIE-NLKSLEGLDISYNI 87 (800)
Q Consensus 11 Le~LdLS~N~Ls~Ip~L~~L-~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsL-p~L~-~L~sL~~LdLS~N~ 87 (800)
=++++|.+.++..+..++.+ .....++|+.|.|..++.+.. ++.|.+|.|++|+|+.+ |.+. -+++|..|.|.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~-l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPH-LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCC-ccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 46788999999888766554 578999999999999887654 59999999999999999 5555 45789999999999
Q ss_pred CCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchhhHHHHHHHH
Q 003724 88 ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIA 153 (800)
Q Consensus 88 IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a~~l~s 153 (800)
|..+.++..+..+|.|+.|.+-+||++....||..++..+ +++-.||...|+..|+..|+.+|.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl--p~l~~LDF~kVt~~ER~~A~~~f~ 163 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL--PSLRTLDFQKVTRKEREEAEVFFK 163 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec--CcceEeehhhhhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999887777 455556788899999999999973
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=2e-10 Score=130.71 Aligned_cols=136 Identities=25% Similarity=0.315 Sum_probs=121.2
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc-CCCCCCCC
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSL 78 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp-~L~~L~sL 78 (800)
||+++..|..|++|||+.|+++.+| .+..|+ |+.|-+++|+++.+|..++.+++|..|+.+.|.|.++| .++.+.+|
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~sl 191 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSL 191 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHH
Confidence 6889999999999999999999987 788888 89999999999999988888899999999999999986 79999999
Q ss_pred CEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchh
Q 003724 79 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 144 (800)
Q Consensus 79 ~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E 144 (800)
+.|+++.|++..+|+ .+..|+ |..|+++.|.|..+| --|..++.|+.+-|++||+....
T Consensus 192 r~l~vrRn~l~~lp~--El~~Lp-Li~lDfScNkis~iP----v~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 192 RDLNVRRNHLEDLPE--ELCSLP-LIRLDFSCNKISYLP----VDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHHHHhhhhhhhCCH--HHhCCc-eeeeecccCceeecc----hhhhhhhhheeeeeccCCCCCCh
Confidence 999999999999986 456775 999999999998775 44667888999999999998653
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.88 E-value=2.4e-10 Score=125.90 Aligned_cols=114 Identities=26% Similarity=0.412 Sum_probs=89.6
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc--CCCCCCC
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKS 77 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp--~L~~L~s 77 (800)
+|..+..+++|..|+|++|.+..+| .++.+..|+.|+++.|++..+|.....+..|+.+-.++|+|..++ ++..|.+
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred chHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 3556777888888888888888887 677777788888888888888776666666777777778888874 5788888
Q ss_pred CCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCC
Q 003724 78 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 116 (800)
Q Consensus 78 L~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~ 116 (800)
|.+|||.+|-|..+|+ .++++++|++|.|.||||...
T Consensus 507 L~tLDL~nNdlq~IPp--~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPP--ILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred cceeccCCCchhhCCh--hhccccceeEEEecCCccCCC
Confidence 8888888888888885 678888888888888888743
No 16
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=4.4e-10 Score=120.30 Aligned_cols=138 Identities=22% Similarity=0.272 Sum_probs=116.0
Q ss_pred CCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCC-CCCCCCCEEEcc
Q 003724 7 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI-ENLKSLEGLDIS 84 (800)
Q Consensus 7 ~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L-~~L~sL~~LdLS 84 (800)
..+.|++||||+|.|+.++ ...-+|.++.|++++|.|..+..+. .+++|+.|+|++|.++.+.+| ..|-+.+.|.|+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa-~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLA-ELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhh-hcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3457899999999999997 6777899999999999999988744 469999999999999999754 578899999999
Q ss_pred CCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchhhHHHHH
Q 003724 85 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 150 (800)
Q Consensus 85 ~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a~~ 150 (800)
.|.|.++.. ++.|-+|..|++++|+|......+ .+..+|.|..+.|-+||+...--++..+
T Consensus 361 ~N~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~~~vdYRTKV 421 (490)
T KOG1259|consen 361 QNKIETLSG---LRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLAGSVDYRTKV 421 (490)
T ss_pred hhhHhhhhh---hHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCccccchHHHHH
Confidence 999998876 667888999999999998765443 3778999999999999998764333333
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.80 E-value=3.5e-10 Score=124.63 Aligned_cols=134 Identities=22% Similarity=0.255 Sum_probs=91.0
Q ss_pred chhcCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc--CCCCCCCC
Q 003724 2 DESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSL 78 (800)
Q Consensus 2 PesL~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp--~L~~L~sL 78 (800)
|+..-.++.|+.||...|-++.+| .++.+.+|..|+|..|+|..+|.+.+ +..|.+|+++.|.|..+| ...++++|
T Consensus 176 ~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPG-CSLLKELHVGENQIEMLPAEHLKHLNSL 254 (565)
T ss_pred CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCc-cHHHHHHHhcccHHHhhHHHHhcccccc
Confidence 344444667777777777777765 67777777777777777777774433 466777777777777775 35577777
Q ss_pred CEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCch
Q 003724 79 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 79 ~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~ 143 (800)
.+|||+.|+|+.+|. .+.-|.+|..|+|++|-|+..| ..++.+ .++.+.|.|||+...
T Consensus 255 ~vLDLRdNklke~Pd--e~clLrsL~rLDlSNN~is~Lp----~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 255 LVLDLRDNKLKEVPD--EICLLRSLERLDLSNNDISSLP----YSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred eeeeccccccccCch--HHHHhhhhhhhcccCCccccCC----cccccc-eeeehhhcCCchHHH
Confidence 777777777777774 4556677777777777777665 223444 566667777777544
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.73 E-value=2.4e-09 Score=127.23 Aligned_cols=103 Identities=35% Similarity=0.376 Sum_probs=58.1
Q ss_pred CCCcEEeCCCCCCCC--CCCCCCCCCCcEEECCCCCCCccccccc-cCCCCcEEEccCCCCCCCc-CCCCCCCCCEEEcc
Q 003724 9 PAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 84 (800)
Q Consensus 9 ~~Le~LdLS~N~Ls~--Ip~L~~L~nLq~LnLS~N~LssLp~l~~-~L~~L~~LnLS~NkLtsLp-~L~~L~sL~~LdLS 84 (800)
+.|+.|+|.+|.++. +|.|.++++|++|+|++|+|..+|.... .+..|+.|+||+|+|+.+| .+..++.|++|...
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 345555566666655 3455555566666666666665554332 2555566666666666654 45555556666666
Q ss_pred CCcCCCCchhhhhcCCCCCCEEEccCCCCC
Q 003724 85 YNIISTFSELEFLASLPYLLNLWLEGNPLC 114 (800)
Q Consensus 85 ~N~IssL~~L~~L~~LpnLr~LdLs~NpLs 114 (800)
.|+|..+|+ +..++.|+.+||+.|.++
T Consensus 439 sN~l~~fPe---~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 439 SNQLLSFPE---LAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred CCceeechh---hhhcCcceEEecccchhh
Confidence 666655553 445555666666666555
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.71 E-value=4.8e-08 Score=117.53 Aligned_cols=127 Identities=25% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCCcEEeCCCCCCCCCCCCC--------------C---C-CCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCC
Q 003724 8 LPAVETLDLSRNKFAKVDNLR--------------K---C-VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL 69 (800)
Q Consensus 8 L~~Le~LdLS~N~Ls~Ip~L~--------------~---L-~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsL 69 (800)
+++|+.|+|++|+|+.+|.+. . + .+|+.|+|++|+|+.+|... .+|..|++++|+|+.+
T Consensus 301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 301 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSL 377 (788)
T ss_pred ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCC---cccceehhhccccccC
Confidence 377888888888777764211 1 1 26777888888887776532 3444555555555544
Q ss_pred cCCC------------------CCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCc
Q 003724 70 RGIE------------------NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPA 131 (800)
Q Consensus 70 p~L~------------------~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLs 131 (800)
|.+. ..++|+.|+|++|+|+.+|.+ +.+|+.|+|++|.|+..| ..+..++.+.
T Consensus 378 P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l-----~~~L~~L~Ls~NqLt~LP----~sl~~L~~L~ 448 (788)
T PRK15387 378 PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQLTRLP----ESLIHLSSET 448 (788)
T ss_pred cccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcc-----hhhhhhhhhccCcccccC----hHHhhccCCC
Confidence 4221 023444455555555444421 124555566666665443 2345677889
Q ss_pred EEEcCCCCCCchhhH
Q 003724 132 KLKVDGKEISTRELW 146 (800)
Q Consensus 132 lL~LDgNpIs~~E~~ 146 (800)
.++|.+|+++.....
T Consensus 449 ~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 449 TVNLEGNPLSERTLQ 463 (788)
T ss_pred eEECCCCCCCchHHH
Confidence 999999999865443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.66 E-value=1.3e-08 Score=112.31 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=63.1
Q ss_pred CCCCcEEEccCCCCCCCc--CCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCC
Q 003724 53 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 130 (800)
Q Consensus 53 L~~L~~LnLS~NkLtsLp--~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sL 130 (800)
+++|+.|+|++|+|+.+. +|..+..|+.|.|..|+|..+.. ..|..+..|++|+|.+|.|++.. ...|..+..+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~---~~aF~~~~~l 348 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVA---PGAFQTLFSL 348 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEe---ccccccccee
Confidence 456666666666666663 46666666666666666666655 56778888899999999998663 2446667778
Q ss_pred cEEEcCCCCCCchhh
Q 003724 131 AKLKVDGKEISTREL 145 (800)
Q Consensus 131 slL~LDgNpIs~~E~ 145 (800)
..+.|-.||+.+..+
T Consensus 349 ~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCR 363 (498)
T ss_pred eeeehccCcccCccc
Confidence 888999999988754
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.65 E-value=1.9e-09 Score=128.09 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=114.0
Q ss_pred hhcCCCCCCcEEeCCCCCCCCCC--CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCE
Q 003724 3 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 80 (800)
Q Consensus 3 esL~~L~~Le~LdLS~N~Ls~Ip--~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~ 80 (800)
+.|.++++|+.|+|++|+|..+| .+.++..|+.|+||+|+|+.+|...-.++.|++|...+|+|..+|.+..++.|+.
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 35678899999999999999998 6899999999999999999999777778999999999999999999999999999
Q ss_pred EEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCC
Q 003724 81 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 141 (800)
Q Consensus 81 LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs 141 (800)
+||+.|.|+.+.- ......|+|++|+|+||..... ....+..+..+...+++-++..
T Consensus 457 lDlS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~l~~---d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTL-PEALPSPNLKYLDLSGNTRLVF---DHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred Eecccchhhhhhh-hhhCCCcccceeeccCCccccc---chhhhHHhhhhhheecccCCCC
Confidence 9999999997754 3333448999999999986433 2355666777788887777443
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.60 E-value=1.2e-07 Score=114.12 Aligned_cols=96 Identities=24% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCCcEEeCCCCCCCCCCCCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCEEEccCCcC
Q 003724 9 PAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNII 88 (800)
Q Consensus 9 ~~Le~LdLS~N~Ls~Ip~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~LdLS~N~I 88 (800)
++|+.|+|+.|+|+.+|.+ +++|++|+|++|+|+.+|.. +++|+.|+|++|.|+.+|.+ +++|+.|+|++|+|
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l--p~~L~~L~Ls~N~L 294 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQL 294 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc--hhhcCEEECcCCcc
Confidence 3677888888888877653 46788888888888777643 24566666666666655432 23455555555555
Q ss_pred CCCchhhhhcCCCCCCEEEccCCCCCCC
Q 003724 89 STFSELEFLASLPYLLNLWLEGNPLCCS 116 (800)
Q Consensus 89 ssL~~L~~L~~LpnLr~LdLs~NpLs~~ 116 (800)
+.+|. .+++|+.|+|++|.+...
T Consensus 295 t~LP~-----~p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 295 TSLPV-----LPPGLQELSVSDNQLASL 317 (788)
T ss_pred ccccc-----cccccceeECCCCccccC
Confidence 55443 134555555555555543
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.56 E-value=1.5e-07 Score=113.23 Aligned_cols=100 Identities=30% Similarity=0.343 Sum_probs=59.2
Q ss_pred CCcEEeCCCCCCCCCCC-CCCCCCCcEEECCCCCCCcccccc-------------------ccCCCCcEEEccCCCCCCC
Q 003724 10 AVETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAAFS-------------------EVSCHIVKLVLRNNALTTL 69 (800)
Q Consensus 10 ~Le~LdLS~N~Ls~Ip~-L~~L~nLq~LnLS~N~LssLp~l~-------------------~~L~~L~~LnLS~NkLtsL 69 (800)
+|+.|+|++|+|+.+|. +. ++|+.|+|++|.|+.+|... ...++|+.|++++|.|+.+
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL 340 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccC
Confidence 56777777777766652 32 35666666666666554311 0124567777777777666
Q ss_pred cC-CCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCc
Q 003724 70 RG-IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 117 (800)
Q Consensus 70 p~-L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p 117 (800)
|. + +++|+.|+|++|+|+.+|. .+ .++|+.|+|++|.++..|
T Consensus 341 P~~l--~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 341 PASL--PPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTNLP 383 (754)
T ss_pred Chhh--cCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCCCC
Confidence 52 2 2567777777777776654 22 246666666666665543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.51 E-value=1.2e-07 Score=99.89 Aligned_cols=133 Identities=27% Similarity=0.274 Sum_probs=77.5
Q ss_pred CCCcEEeCCCCCCCCC------CCCCCC-CCCcEEECCCCCCCc-----cccccccCCCCcEEEccCCCCCC-----C-c
Q 003724 9 PAVETLDLSRNKFAKV------DNLRKC-VNLKHLDLGFNNLRS-----IAAFSEVSCHIVKLVLRNNALTT-----L-R 70 (800)
Q Consensus 9 ~~Le~LdLS~N~Ls~I------p~L~~L-~nLq~LnLS~N~Lss-----Lp~l~~~L~~L~~LnLS~NkLts-----L-p 70 (800)
++|+.|+|++|.++.. ..+..+ ++|+.|+|++|.++. +......+++|+.|++++|.++. + +
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 3477777777777631 134455 677777777777762 22222234567777777777763 1 2
Q ss_pred CCCCCCCCCEEEccCCcCCCCch---hhhhcCCCCCCEEEccCCCCCCCcccchhHhhc----cCCCcEEEcCCCCCCch
Q 003724 71 GIENLKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY----FAHPAKLKVDGKEISTR 143 (800)
Q Consensus 71 ~L~~L~sL~~LdLS~N~IssL~~---L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~----L~sLslL~LDgNpIs~~ 143 (800)
.+..+++|+.|+|++|.|+.... ...+..+++|+.|++++|++..... ..+... .+.++.+++++|.++..
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~--~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA--AALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH--HHHHHHHhccCCCceEEEccCCCCCcH
Confidence 34455677777777777764332 1234566777777777777764210 011111 25677777777776643
No 25
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=2.3e-08 Score=112.05 Aligned_cols=110 Identities=39% Similarity=0.535 Sum_probs=62.1
Q ss_pred cCCCCCCcEEeCCCCCCCCCCC-CCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCEEEc
Q 003724 5 LQLLPAVETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDI 83 (800)
Q Consensus 5 L~~L~~Le~LdLS~N~Ls~Ip~-L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~LdL 83 (800)
+..+++|+.|+|..|+|..+.. +..+++|++|+|++|.|+.+.+.... +.|+.|++++|.|+.++++..++.|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l-~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTL-TLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhc-cchhhheeccCcchhccCCccchhhhcccC
Confidence 4455556666666666666555 55566666666666666655544332 446666666666666655555666666666
Q ss_pred cCCcCCCCchhhhhcCCCCCCEEEccCCCCCCC
Q 003724 84 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 116 (800)
Q Consensus 84 S~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~ 116 (800)
++|+|..+.... +..+.+|+.+++.+|.+...
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 666665554311 34555556666666655544
No 26
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=3.2e-09 Score=123.48 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=111.5
Q ss_pred CCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCC--CCCCCCEEEccCC
Q 003724 10 AVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE--NLKSLEGLDISYN 86 (800)
Q Consensus 10 ~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~--~L~sL~~LdLS~N 86 (800)
.|...+.++|.+..++ .|.-++.|+.|||++|+++.+. ....+++|+.|+|+.|+++.+|.+. .+. |..|.|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 4677889999999987 7889999999999999999987 4556899999999999999998544 444 999999999
Q ss_pred cCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchhhHHHHH
Q 003724 87 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 150 (800)
Q Consensus 87 ~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a~~ 150 (800)
.++.+.. +.+|.+|+.|+|+.|-|.....+ ..+..+..|..+.|.|||+-|....++..
T Consensus 243 ~l~tL~g---ie~LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c~p~hRaat 301 (1096)
T KOG1859|consen 243 ALTTLRG---IENLKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCCAPWHRAAT 301 (1096)
T ss_pred HHHhhhh---HHhhhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCccccCHHHHHHH
Confidence 9998876 66889999999999999876543 33555677899999999998865444433
No 27
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.6e-08 Score=107.77 Aligned_cols=117 Identities=31% Similarity=0.442 Sum_probs=101.6
Q ss_pred CCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEc
Q 003724 29 KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWL 108 (800)
Q Consensus 29 ~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdL 108 (800)
.+.+.+.||+-++.|+.|.-- ..|+.|+.|.|+-|+|+++..+..|++|+.|+|+.|.|.++.++..+.+||+|+.|||
T Consensus 17 dl~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 356778899999999876432 2379999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC--cccchhHhhccCCCcEEEcCCCCCCchhhHHH
Q 003724 109 EGNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRELWER 148 (800)
Q Consensus 109 s~NpLs~~--p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a 148 (800)
..||-+.. +.||..++..+ |.+..||+-+++..|...+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~L--PnLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVL--PNLKKLDNVPVTEEELEEA 135 (388)
T ss_pred ccCCcccccchhHHHHHHHHc--ccchhccCccccHHHHHHH
Confidence 99999865 78999999888 4555778999998876554
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.42 E-value=5.1e-07 Score=108.81 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=86.8
Q ss_pred CCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcC-CC-------------
Q 003724 9 PAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRG-IE------------- 73 (800)
Q Consensus 9 ~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~-L~------------- 73 (800)
++|+.|+|++|.|..+| .+. .+|+.|+|++|.|+.+|... .++|+.|+|++|+|+.+|. +.
T Consensus 241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 241 DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCcc
Confidence 47999999999999987 343 58999999999999988644 3689999999999988752 21
Q ss_pred ------CCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCch
Q 003724 74 ------NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 74 ------~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~ 143 (800)
-.++|+.|++++|.|+.+|. .+ .++|+.|+|++|.|...|. . ..+.|+.++|.+|.++..
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~--~l--~~sL~~L~Ls~N~L~~LP~---~---lp~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTSLPA--SL--PPELQVLDVSKNQITVLPE---T---LPPTITTLDVSRNALTNL 382 (754)
T ss_pred ccCCccccccceeccccCCccccCCh--hh--cCcccEEECCCCCCCcCCh---h---hcCCcCEEECCCCcCCCC
Confidence 11346666666666665553 12 2577888888887775542 1 135678888888887644
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=1.8e-07 Score=103.14 Aligned_cols=127 Identities=30% Similarity=0.410 Sum_probs=73.3
Q ss_pred CCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCC-CCCCCCCEEEccCC-
Q 003724 10 AVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI-ENLKSLEGLDISYN- 86 (800)
Q Consensus 10 ~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L-~~L~sL~~LdLS~N- 86 (800)
+|+.|++++|.+..++ .+..+++|+.|+++.|+++.++.....++.|+.|++++|+|+.+|.. ..+..|+.|.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 5666666666666663 56666666666666666666665544445666666666666655533 23333555555555
Q ss_pred ----------------------cCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCch
Q 003724 87 ----------------------IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 87 ----------------------~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~ 143 (800)
++..++ ..+..+++|+.|++++|.++..+. +..+..++.+++++|.+...
T Consensus 221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~--~~~~~l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 221 IIELLSSLSNLKNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNNQISSISS-----LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ceecchhhhhcccccccccCCceeeecc--chhccccccceecccccccccccc-----ccccCccCEEeccCcccccc
Confidence 444432 245556667777777777765532 44556677777777666533
No 30
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=8.6e-08 Score=107.47 Aligned_cols=139 Identities=29% Similarity=0.276 Sum_probs=116.2
Q ss_pred CCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCEEEccC
Q 003724 7 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISY 85 (800)
Q Consensus 7 ~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~LdLS~ 85 (800)
.+..++.+++..|.|..+. .+..+.+|..|++..|.|..+......+++|+.|+|++|.|+.+.++..++.|+.|++++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheecc
Confidence 4567778889999999954 599999999999999999999885566799999999999999999999999999999999
Q ss_pred CcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchhhHHHHHH
Q 003724 86 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 151 (800)
Q Consensus 86 N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a~~l 151 (800)
|.|+.+.. +..++.|+.+++++|.+...... . ...+..+..+.|.+|.+...+.......
T Consensus 150 N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~ 209 (414)
T KOG0531|consen 150 NLISDISG---LESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIEGLDLLKK 209 (414)
T ss_pred CcchhccC---CccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcccchHHHHH
Confidence 99999976 55699999999999999866421 1 3567788889999999887765444333
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.39 E-value=1.4e-07 Score=99.53 Aligned_cols=139 Identities=23% Similarity=0.172 Sum_probs=69.2
Q ss_pred hcCCCCCCcEEeCCCCCCCCC--CCCCCC---CCCcEEECCCCCCCc-----cccccccC-CCCcEEEccCCCCCCC---
Q 003724 4 SLQLLPAVETLDLSRNKFAKV--DNLRKC---VNLKHLDLGFNNLRS-----IAAFSEVS-CHIVKLVLRNNALTTL--- 69 (800)
Q Consensus 4 sL~~L~~Le~LdLS~N~Ls~I--p~L~~L---~nLq~LnLS~N~Lss-----Lp~l~~~L-~~L~~LnLS~NkLtsL--- 69 (800)
.|..+++|+.|+|++|.+... +.+..+ ++|+.|++++|.+.. +......+ ++|+.|+|++|.++.-
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 444555666666666666531 122222 336666666666552 11111223 5666666666666521
Q ss_pred ---cCCCCCCCCCEEEccCCcCCCCch---hhhhcCCCCCCEEEccCCCCCCCc-ccchhHhhccCCCcEEEcCCCCCCc
Q 003724 70 ---RGIENLKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKLKVDGKEIST 142 (800)
Q Consensus 70 ---p~L~~L~sL~~LdLS~N~IssL~~---L~~L~~LpnLr~LdLs~NpLs~~p-~~r~~i~s~L~sLslL~LDgNpIs~ 142 (800)
..+..+++|+.|+|++|.|+.... ...+..+++|+.|+|++|.+.... ......+..++.++.+++.+|+++.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 134455566666666666653111 012334456666666666665321 1112234445566666666666654
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=2.3e-07 Score=76.82 Aligned_cols=59 Identities=36% Similarity=0.459 Sum_probs=38.9
Q ss_pred CCCcEEEccCCCCCCCc--CCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCC
Q 003724 54 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 113 (800)
Q Consensus 54 ~~L~~LnLS~NkLtsLp--~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpL 113 (800)
++|+.|++++|+|+.++ .|..+++|+.|++++|.|+.+++ ..|..+++|+.|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 35666666666666664 46666777777777777766665 5666777777777777654
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.34 E-value=9.2e-08 Score=109.51 Aligned_cols=113 Identities=28% Similarity=0.314 Sum_probs=102.6
Q ss_pred CchhcCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc-CCCCCCCC
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSL 78 (800)
Q Consensus 1 LPesL~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp-~L~~L~sL 78 (800)
+|..+..|+ |+.|-+++|+++.+| .++.+..|..|+.+.|.|..+|.....+..|+.|++.+|++..+| .+. .-.|
T Consensus 136 lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 136 LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPL 213 (722)
T ss_pred CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCce
Confidence 577788887 999999999999987 788889999999999999999998888999999999999999997 566 4469
Q ss_pred CEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCc
Q 003724 79 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 117 (800)
Q Consensus 79 ~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p 117 (800)
..||++.|+|+.+|- .|.+|..|++|-|.+||+...|
T Consensus 214 i~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred eeeecccCceeecch--hhhhhhhheeeeeccCCCCCCh
Confidence 999999999999984 7999999999999999998764
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=3e-07 Score=101.38 Aligned_cols=133 Identities=27% Similarity=0.291 Sum_probs=103.4
Q ss_pred hcCCCCCCcEEeCCCCCCCCCCCC-CCCC-CCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCC-CCCCCCE
Q 003724 4 SLQLLPAVETLDLSRNKFAKVDNL-RKCV-NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE-NLKSLEG 80 (800)
Q Consensus 4 sL~~L~~Le~LdLS~N~Ls~Ip~L-~~L~-nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~-~L~sL~~ 80 (800)
.+..++.++.|++.+|.++.++.. ..+. +|+.|+++.|.|..++.....++.|+.|+++.|+++.++... .++.|+.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 345667899999999999999854 4443 899999999999999766677899999999999999998655 9999999
Q ss_pred EEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCc
Q 003724 81 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 142 (800)
Q Consensus 81 LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~ 142 (800)
|++++|+|+.++. ....+..|+.|.+.+|++...+ ..+..+..+..+.+.+|++..
T Consensus 191 L~ls~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~----~~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 191 LDLSGNKISDLPP--EIELLSALEELDLSNNSIIELL----SSLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred eeccCCccccCch--hhhhhhhhhhhhhcCCcceecc----hhhhhcccccccccCCceeee
Confidence 9999999999996 2344556999999999644332 223334445555566666543
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.3e-06 Score=101.31 Aligned_cols=81 Identities=31% Similarity=0.365 Sum_probs=41.0
Q ss_pred CcEEECCCCCCCc-cccccccCCCCcEEEccCCCCCC-Cc-CCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEcc
Q 003724 33 LKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 109 (800)
Q Consensus 33 Lq~LnLS~N~Lss-Lp~l~~~L~~L~~LnLS~NkLts-Lp-~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs 109 (800)
+..|+|++|.+.. +|.....+++|+.|+|++|.|+. +| .+..+++|+.|+|++|.|+...+ ..+..|++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEECc
Confidence 4455555555542 33333345555555555555543 33 35555555555555555554333 345555555555555
Q ss_pred CCCCC
Q 003724 110 GNPLC 114 (800)
Q Consensus 110 ~NpLs 114 (800)
+|.+.
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 55554
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=7e-06 Score=103.44 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=61.1
Q ss_pred CcEEeCCCCCCCCCCCCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCC-CCCCcCCCCCCCCCEEEccCCc-C
Q 003724 11 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA-LTTLRGIENLKSLEGLDISYNI-I 88 (800)
Q Consensus 11 Le~LdLS~N~Ls~Ip~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~Nk-LtsLp~L~~L~sL~~LdLS~N~-I 88 (800)
|+.|.+.+|.+..+|.-..+.+|..|+|.+|.|..++.....+++|+.|+|++|. ++.+|.+..+++|+.|+|++|. +
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc
Confidence 5555555555555543224455555666665555555444445556666665542 4445555555666666665543 3
Q ss_pred CCCchhhhhcCCCCCCEEEccCC-CCCCCcccchhHhhccCCCcEEEcCCC
Q 003724 89 STFSELEFLASLPYLLNLWLEGN-PLCCSRWYRAQVFSYFAHPAKLKVDGK 138 (800)
Q Consensus 89 ssL~~L~~L~~LpnLr~LdLs~N-pLs~~p~~r~~i~s~L~sLslL~LDgN 138 (800)
..+|. .+..|++|+.|+|++| .+...|.. + .++.|+.+.|.++
T Consensus 671 ~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 671 VELPS--SIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGC 714 (1153)
T ss_pred cccch--hhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCC
Confidence 34442 4555566666666553 23322211 0 2445555555554
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.21 E-value=9.5e-08 Score=105.72 Aligned_cols=130 Identities=25% Similarity=0.270 Sum_probs=104.6
Q ss_pred CCcEEeCCCCCCCCCC--CCCCCCCCcEEECCCCCCCcccccccc-CCCCcEEEccC-CCCCCCc--CCCCCCCCCEEEc
Q 003724 10 AVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEV-SCHIVKLVLRN-NALTTLR--GIENLKSLEGLDI 83 (800)
Q Consensus 10 ~Le~LdLS~N~Ls~Ip--~L~~L~nLq~LnLS~N~LssLp~l~~~-L~~L~~LnLS~-NkLtsLp--~L~~L~sL~~LdL 83 (800)
.-..|+|..|+|+.|| +|..+++|+.|+|+.|.|+.|.+..+. +..|..|.+-+ |+|+.+| .|+.|.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4567889999999987 789999999999999999988766554 77777776666 8999986 5889999999999
Q ss_pred cCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCch
Q 003724 84 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 84 S~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~ 143 (800)
.-|+|..+.. ..|..|++|..|.|-.|.+..++. ..|..+..++.++|..||.-++
T Consensus 148 Nan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~---~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 148 NANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK---GTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred ChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc---ccccchhccchHhhhcCccccc
Confidence 9999988887 788899999999999998876642 2345566778888888885544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=9.4e-07 Score=73.11 Aligned_cols=57 Identities=39% Similarity=0.405 Sum_probs=32.6
Q ss_pred CCcEEECCCCCCCccccccc-cCCCCcEEEccCCCCCCCc--CCCCCCCCCEEEccCCcC
Q 003724 32 NLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNII 88 (800)
Q Consensus 32 nLq~LnLS~N~LssLp~l~~-~L~~L~~LnLS~NkLtsLp--~L~~L~sL~~LdLS~N~I 88 (800)
+|++|+|++|+|+.++...+ .+++|+.|++++|+|+.++ .|..+++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45555666666655554333 2556666666666665553 356666666666666654
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.9e-07 Score=100.02 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=77.7
Q ss_pred CCCCCcEEeCCCCCCCCCC---CCCCCCCCcEEECCCCCCCccc-cccccCCCCcEEEccCCCCCCCc---CCCCCCCCC
Q 003724 7 LLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR---GIENLKSLE 79 (800)
Q Consensus 7 ~L~~Le~LdLS~N~Ls~Ip---~L~~L~nLq~LnLS~N~LssLp-~l~~~L~~L~~LnLS~NkLtsLp---~L~~L~sL~ 79 (800)
.++.|+.|.|+.+.|+.-. -+..+|+|..|+|..|..-.+. .....+..|+.|+|++|.+..++ .++.++.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 3556777777777777421 2445666777777776422221 12223566777777777666553 456666677
Q ss_pred EEEccCCcCCCCchhhh-----hcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchh
Q 003724 80 GLDISYNIISTFSELEF-----LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 144 (800)
Q Consensus 80 ~LdLS~N~IssL~~L~~-----L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E 144 (800)
.|+++.+.|.++...+. ...+++|+.|++..|++...+.+. .+..+++++.+.++.|+++..+
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~--~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN--HLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc--hhhccchhhhhhcccccccccc
Confidence 77777666666544222 345666777777777775443322 1334555566666666666543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9.7e-07 Score=98.87 Aligned_cols=139 Identities=25% Similarity=0.292 Sum_probs=97.2
Q ss_pred cCCCCCCcEEeCCCCCCCCCC----CCCCCCCCcEEECCCCCCCcccc--ccccCCCCcEEEccCCCCCC---------C
Q 003724 5 LQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAA--FSEVSCHIVKLVLRNNALTT---------L 69 (800)
Q Consensus 5 L~~L~~Le~LdLS~N~Ls~Ip----~L~~L~nLq~LnLS~N~LssLp~--l~~~L~~L~~LnLS~NkLts---------L 69 (800)
...|++++.|||++|.|..+. -...||+|+.|+|+.|.+..... ....+++|+.|.|+.+.|+. .
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 456777788888888777752 34566777777777777764321 11125566666666666543 1
Q ss_pred c------------------CCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccch---hHhhccC
Q 003724 70 R------------------GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA---QVFSYFA 128 (800)
Q Consensus 70 p------------------~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~---~i~s~L~ 128 (800)
| ...-+..|+.|||++|++-+++.....+.||.|+.|+++.+.+.....+.. .....++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 1 123457899999999999999877788999999999999999987632222 2345688
Q ss_pred CCcEEEcCCCCCCch
Q 003724 129 HPAKLKVDGKEISTR 143 (800)
Q Consensus 129 sLslL~LDgNpIs~~ 143 (800)
+|+.|.++.|+|...
T Consensus 302 kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 302 KLEYLNISENNIRDW 316 (505)
T ss_pred cceeeecccCccccc
Confidence 999999999998644
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=1.5e-05 Score=94.40 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=77.5
Q ss_pred CCcEEeCCCCCCCC-CC-CCCCCCCCcEEECCCCCCC-ccccccccCCCCcEEEccCCCCCC-Cc-CCCCCCCCCEEEcc
Q 003724 10 AVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLR-SIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDIS 84 (800)
Q Consensus 10 ~Le~LdLS~N~Ls~-Ip-~L~~L~nLq~LnLS~N~Ls-sLp~l~~~L~~L~~LnLS~NkLts-Lp-~L~~L~sL~~LdLS 84 (800)
.++.|+|++|.+++ +| .+..+++|+.|+|++|.|. .+|.....+++|+.|+|++|.|+. +| .+..|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888876 34 6778888888888888887 466666667888888888888875 44 57888888888888
Q ss_pred CCcCCCCchhhhhcC-CCCCCEEEccCCCCCC
Q 003724 85 YNIISTFSELEFLAS-LPYLLNLWLEGNPLCC 115 (800)
Q Consensus 85 ~N~IssL~~L~~L~~-LpnLr~LdLs~NpLs~ 115 (800)
+|.++...+ ..+.. +.++..+++.+|+..|
T Consensus 499 ~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVP-AALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCC-hHHhhccccCceEEecCCcccc
Confidence 888875444 33443 3466778888887554
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=1.1e-05 Score=83.32 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=98.1
Q ss_pred CCCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCcCCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCC
Q 003724 25 DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLL 104 (800)
Q Consensus 25 p~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr 104 (800)
|.+-+...-+.++|.+.+|..+....-.+-+...++|++|.|..++.|.+++.|..|.|++|+|+.+.+ .....+|+|.
T Consensus 13 pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~ 91 (233)
T KOG1644|consen 13 PQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLK 91 (233)
T ss_pred hhhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccc
Confidence 333344456889999999988877555577899999999999999999999999999999999999987 4455678999
Q ss_pred EEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchh
Q 003724 105 NLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 144 (800)
Q Consensus 105 ~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E 144 (800)
.|.|.+|.|....+... +..++.|+.+.+-+||+....
T Consensus 92 ~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDP--LASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred eEEecCcchhhhhhcch--hccCCccceeeecCCchhccc
Confidence 99999999998765433 668899999999999998654
No 43
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.00 E-value=3.6e-05 Score=97.11 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=43.0
Q ss_pred CCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCC-CCccccccccCCCCcEEEccCCC-CCCCc-CCCCCCCCCEEEc
Q 003724 8 LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNN-LRSIAAFSEVSCHIVKLVLRNNA-LTTLR-GIENLKSLEGLDI 83 (800)
Q Consensus 8 L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~-LssLp~l~~~L~~L~~LnLS~Nk-LtsLp-~L~~L~sL~~LdL 83 (800)
+.+|+.|+|++|.|..++ .+..+++|+.|+|++|. +..+|. ...+++|+.|+|++|. +..+| .+..+++|+.|++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 455666666666666553 45555666666665542 444443 2234555555555542 33343 3455555555555
Q ss_pred cCC-cCCCCc
Q 003724 84 SYN-IISTFS 92 (800)
Q Consensus 84 S~N-~IssL~ 92 (800)
++| .+..+|
T Consensus 689 ~~c~~L~~Lp 698 (1153)
T PLN03210 689 SRCENLEILP 698 (1153)
T ss_pred CCCCCcCccC
Confidence 543 344443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.3e-05 Score=86.65 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=83.9
Q ss_pred CCCcEEEccCCCCCCC---cCCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCC--cccchhHhhccC
Q 003724 54 CHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS--RWYRAQVFSYFA 128 (800)
Q Consensus 54 ~~L~~LnLS~NkLtsL---p~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~--p~~r~~i~s~L~ 128 (800)
+++..+.++.|.|.+. .+...+|.+--|+|+.|+|.++..++.+..++.|..|.+..||+... ..-|.. +-..+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~-llIaR 277 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRF-LLIAR 277 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceE-EEEee
Confidence 4444444444444443 13455677888999999999999999999999999999999999865 222221 22233
Q ss_pred CCcEEEcCCCCCCchhhHHHHHHHHhhcCCCCCccccCCCCCCCCCCCchhhhhhhhhhhhhcccc
Q 003724 129 HPAKLKVDGKEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESE 194 (800)
Q Consensus 129 sLslL~LDgNpIs~~E~~~a~~l~s~~~~~p~~~~~~~P~k~~~~~ed~~~~k~kk~~RL~~I~~e 194 (800)
..+...|+|..|+..++...+..|.+- |...+..+....+......+...++.+...
T Consensus 278 L~~v~vLNGskIss~er~dSEr~fVRy---------ym~qke~p~ky~el~~~Hg~l~~Lv~~~l~ 334 (418)
T KOG2982|consen 278 LTKVQVLNGSKISSRERKDSERRFVRY---------YMSQKELPDKYGELELLHGRLYELVKLHLI 334 (418)
T ss_pred ccceEEecCcccchhhhhhhHHHHHHH---------HhhhhhcchhhhhHHHHccchhhhhhcccC
Confidence 466677889999999887776666552 222333333344444444555555555443
No 45
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.85 E-value=1e-05 Score=85.81 Aligned_cols=112 Identities=28% Similarity=0.302 Sum_probs=87.4
Q ss_pred CCCCcEEECCCCCCCccccccccCCCCcEEEccCC--CCCC-Cc-CCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCCE
Q 003724 30 CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN--ALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLN 105 (800)
Q Consensus 30 L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~N--kLts-Lp-~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~ 105 (800)
+..|+.|.+.+..++++..+.. |++|++|.++.| ++.. ++ -...+|+|++|+|+.|+|+.+..+..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3456666677777776655443 589999999999 4443 33 34566999999999999998877777889999999
Q ss_pred EEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCchh
Q 003724 106 LWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 144 (800)
Q Consensus 106 LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E 144 (800)
|++.++..+....||..+|..+ +++.+||+..+...+
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll--~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLL--PSLKYLDGCDVDGEE 157 (260)
T ss_pred hhcccCCccccccHHHHHHHHh--hhhccccccccCCcc
Confidence 9999999999889999998888 566667777665443
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=1.3e-06 Score=85.63 Aligned_cols=126 Identities=20% Similarity=0.219 Sum_probs=74.3
Q ss_pred CcEEeCCCCCCCCCC----CCCCCCCCcEEECCCCCCCccccccc-cCCCCcEEEccCCCCCCCc-CCCCCCCCCEEEcc
Q 003724 11 VETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 84 (800)
Q Consensus 11 Le~LdLS~N~Ls~Ip----~L~~L~nLq~LnLS~N~LssLp~l~~-~L~~L~~LnLS~NkLtsLp-~L~~L~sL~~LdLS 84 (800)
+..|+|+.+.|-.++ .+.....|+..+|++|.+..+|+-.. .++.++.|+|++|.|..+| .+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 445666666666543 34445566666777777776664333 2456777777777777765 56677777777777
Q ss_pred CCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCc
Q 003724 85 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 142 (800)
Q Consensus 85 ~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~ 142 (800)
.|.|...+. .+..|.+|-.|+..+|.+..++. . +-+-..+-+..|..+||..
T Consensus 109 ~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid~-d---l~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 109 FNPLNAEPR--VIAPLIKLDMLDSPENARAEIDV-D---LFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred cCccccchH--HHHHHHhHHHhcCCCCccccCcH-H---HhccccHHHHHhcCCcccc
Confidence 777766664 33446667777777776665531 1 1112234444555555553
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=4.8e-05 Score=60.20 Aligned_cols=38 Identities=42% Similarity=0.531 Sum_probs=18.7
Q ss_pred CCcEEEccCCCCCCCcC-CCCCCCCCEEEccCCcCCCCc
Q 003724 55 HIVKLVLRNNALTTLRG-IENLKSLEGLDISYNIISTFS 92 (800)
Q Consensus 55 ~L~~LnLS~NkLtsLp~-L~~L~sL~~LdLS~N~IssL~ 92 (800)
+|+.|+|++|+|+.++. +..|++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 44555555555555544 555555555555555555444
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.48 E-value=7.9e-05 Score=58.95 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCCcEEeCCCCCCCCCCC-CCCCCCCcEEECCCCCCCcccc
Q 003724 9 PAVETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA 48 (800)
Q Consensus 9 ~~Le~LdLS~N~Ls~Ip~-L~~L~nLq~LnLS~N~LssLp~ 48 (800)
++|++|+|++|+|+.++. +..|++|+.|+|++|+|+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 356666666666666654 6666666666666666665543
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=7.6e-05 Score=82.18 Aligned_cols=141 Identities=23% Similarity=0.238 Sum_probs=99.4
Q ss_pred hhcCCCCCCcEEeCCCCCCCC--CC----CCCCCCCCcEEECCCCCCCcccc--------------ccccCCCCcEEEcc
Q 003724 3 ESLQLLPAVETLDLSRNKFAK--VD----NLRKCVNLKHLDLGFNNLRSIAA--------------FSEVSCHIVKLVLR 62 (800)
Q Consensus 3 esL~~L~~Le~LdLS~N~Ls~--Ip----~L~~L~nLq~LnLS~N~LssLp~--------------l~~~L~~L~~LnLS 62 (800)
++|...+.|++|+||.|.|.. ++ -|.++..|++|+|.+|.+..... ....-+.|+.+..+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 456778899999999998876 32 36678899999999998864221 12235789999999
Q ss_pred CCCCCCCc------CCCCCCCCCEEEccCCcCCCCch---hhhhcCCCCCCEEEccCCCCCCC-cccchhHhhccCCCcE
Q 003724 63 NNALTTLR------GIENLKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCS-RWYRAQVFSYFAHPAK 132 (800)
Q Consensus 63 ~NkLtsLp------~L~~L~sL~~LdLS~N~IssL~~---L~~L~~LpnLr~LdLs~NpLs~~-p~~r~~i~s~L~sLsl 132 (800)
+|++..-+ .+...+.|+.+.++.|.|..-.. ...+.++++|++|+|++|-++.. .-+....+..++.|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 99987642 46667888888888888764221 14567788888888888888754 2233445666777777
Q ss_pred EEcCCCCCCch
Q 003724 133 LKVDGKEISTR 143 (800)
Q Consensus 133 L~LDgNpIs~~ 143 (800)
+++.+.-+...
T Consensus 246 l~l~dcll~~~ 256 (382)
T KOG1909|consen 246 LNLGDCLLENE 256 (382)
T ss_pred ecccccccccc
Confidence 77777666544
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=2.3e-05 Score=77.09 Aligned_cols=106 Identities=25% Similarity=0.270 Sum_probs=82.9
Q ss_pred CCcEEECCCCCCCcccccccc---CCCCcEEEccCCCCCCCc-CC-CCCCCCCEEEccCCcCCCCchhhhhcCCCCCCEE
Q 003724 32 NLKHLDLGFNNLRSIAAFSEV---SCHIVKLVLRNNALTTLR-GI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNL 106 (800)
Q Consensus 32 nLq~LnLS~N~LssLp~l~~~---L~~L~~LnLS~NkLtsLp-~L-~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~L 106 (800)
-+..|+|++++|-.++..... ...|+..+|++|.+..+| .| ..++.++.|+|++|.|+.+|. .++.++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhc
Confidence 356788999988876653332 467888999999999986 34 356799999999999999997 49999999999
Q ss_pred EccCCCCCCCcccchhHhhccCCCcEEEcCCCCCCch
Q 003724 107 WLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 107 dLs~NpLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~ 143 (800)
+++.|++...+ .++..+.++-.++..+|.+-..
T Consensus 106 Nl~~N~l~~~p----~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 106 NLRFNPLNAEP----RVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccccCccccch----HHHHHHHhHHHhcCCCCccccC
Confidence 99999998775 4444566666677777765433
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.96 E-value=0.00047 Score=84.99 Aligned_cols=123 Identities=25% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCcEEeCCCCCCCCCCCCCCCCCCcEEECCCCC--CCccccccc-cCCCCcEEEccCC-CCCCCc-CCCCCCCCCEEEcc
Q 003724 10 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNN--LRSIAAFSE-VSCHIVKLVLRNN-ALTTLR-GIENLKSLEGLDIS 84 (800)
Q Consensus 10 ~Le~LdLS~N~Ls~Ip~L~~L~nLq~LnLS~N~--LssLp~l~~-~L~~L~~LnLS~N-kLtsLp-~L~~L~sL~~LdLS 84 (800)
.++.+.+.+|.+..++.-..++.|++|-+..|. +..++...+ .++.|+.|+|++| .+..+| .++.|-+|++|+|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 445555555555555433344455555555554 444443222 2555666666654 344454 45555566666666
Q ss_pred CCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcCC
Q 003724 85 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 137 (800)
Q Consensus 85 ~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LDg 137 (800)
...|+.+|. .++.|..|.+|++..+.-.... ..+...+.+|+.+.|..
T Consensus 604 ~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 604 DTGISHLPS--GLGNLKKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPR 651 (889)
T ss_pred CCCccccch--HHHHHHhhheeccccccccccc---cchhhhcccccEEEeec
Confidence 666655553 4555555566655554332221 22333345555555543
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.91 E-value=0.00048 Score=76.08 Aligned_cols=141 Identities=20% Similarity=0.151 Sum_probs=104.3
Q ss_pred hcCCCCCCcEEeCCCCCCCCCC---------------CCCCCCCCcEEECCCCCCCcccc-----ccccCCCCcEEEccC
Q 003724 4 SLQLLPAVETLDLSRNKFAKVD---------------NLRKCVNLKHLDLGFNNLRSIAA-----FSEVSCHIVKLVLRN 63 (800)
Q Consensus 4 sL~~L~~Le~LdLS~N~Ls~Ip---------------~L~~L~nLq~LnLS~N~LssLp~-----l~~~L~~L~~LnLS~ 63 (800)
-|..+..|+.|.|.+|.+.... ....-+.|+++..+.|++..-+. .....+.|+.+.+..
T Consensus 115 ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 115 LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec
Confidence 4566788999999999888641 24456789999999999986442 223368899999999
Q ss_pred CCCCCC------cCCCCCCCCCEEEccCCcCCCCchh---hhhcCCCCCCEEEccCCCCCCCc--ccchhHhhccCCCcE
Q 003724 64 NALTTL------RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLCCSR--WYRAQVFSYFAHPAK 132 (800)
Q Consensus 64 NkLtsL------p~L~~L~sL~~LdLS~N~IssL~~L---~~L~~LpnLr~LdLs~NpLs~~p--~~r~~i~s~L~sLsl 132 (800)
|.|..- .++.+++.|++|||+.|-++.-..+ ..+..|++|+.|++++..+...- .+-...-..+|.++.
T Consensus 195 N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~v 274 (382)
T KOG1909|consen 195 NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEV 274 (382)
T ss_pred ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCce
Confidence 998652 3688999999999999998864432 46778889999999998887541 111222334678899
Q ss_pred EEcCCCCCCchh
Q 003724 133 LKVDGKEISTRE 144 (800)
Q Consensus 133 L~LDgNpIs~~E 144 (800)
+.|.+|.|+...
T Consensus 275 l~l~gNeIt~da 286 (382)
T KOG1909|consen 275 LELAGNEITRDA 286 (382)
T ss_pred eccCcchhHHHH
Confidence 999999987543
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=4.4e-05 Score=82.12 Aligned_cols=99 Identities=26% Similarity=0.279 Sum_probs=84.3
Q ss_pred CCCCcEEeCCCCCCCCCCCCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc---CCCCCCCCCEEEcc
Q 003724 8 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR---GIENLKSLEGLDIS 84 (800)
Q Consensus 8 L~~Le~LdLS~N~Ls~Ip~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp---~L~~L~sL~~LdLS 84 (800)
|.+++.|++-+..|+.|.-...++.|.+|.|+-|.|+++.++.. +++|++|+|..|.|..+. .+.++|+|+.|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~r-CtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQR-CTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHH-HHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 56778899999999999888899999999999999999987654 699999999999999984 68899999999999
Q ss_pred CCcCCCCch----hhhhcCCCCCCEEE
Q 003724 85 YNIISTFSE----LEFLASLPYLLNLW 107 (800)
Q Consensus 85 ~N~IssL~~----L~~L~~LpnLr~Ld 107 (800)
.|.=..-.+ ...+..||+|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 997654332 14677899999886
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.80 E-value=0.00094 Score=82.45 Aligned_cols=105 Identities=27% Similarity=0.267 Sum_probs=87.0
Q ss_pred CCCCCcEEeCCCCC--CCCCCC--CCCCCCCcEEECCCC-CCCccccccccCCCCcEEEccCCCCCCCc-CCCCCCCCCE
Q 003724 7 LLPAVETLDLSRNK--FAKVDN--LRKCVNLKHLDLGFN-NLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEG 80 (800)
Q Consensus 7 ~L~~Le~LdLS~N~--Ls~Ip~--L~~L~nLq~LnLS~N-~LssLp~l~~~L~~L~~LnLS~NkLtsLp-~L~~L~sL~~ 80 (800)
..+.|+.|-+..|. +..++. |..++.|++|||++| .+..+|..+..+-+|++|+|++..|..+| ++.+|..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 34479999999997 666653 888999999999976 46789988888999999999999999997 7999999999
Q ss_pred EEccCCcCCCCchhhhhcCCCCCCEEEccCCC
Q 003724 81 LDISYNIISTFSELEFLASLPYLLNLWLEGNP 112 (800)
Q Consensus 81 LdLS~N~IssL~~L~~L~~LpnLr~LdLs~Np 112 (800)
|++..+.-....+ ..+..|++|++|.|..-.
T Consensus 623 Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIP-GILLELQSLRVLRLPRSA 653 (889)
T ss_pred ecccccccccccc-chhhhcccccEEEeeccc
Confidence 9999887544433 566679999999998766
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.79 E-value=0.001 Score=80.20 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=103.5
Q ss_pred CCCcEEeCCCCCCCCC--C-CC-CCCCCCcEEECCCCCCCcc--ccccccCCCCcEEEccCCCCCCCcCCCCCCCCCEEE
Q 003724 9 PAVETLDLSRNKFAKV--D-NL-RKCVNLKHLDLGFNNLRSI--AAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLD 82 (800)
Q Consensus 9 ~~Le~LdLS~N~Ls~I--p-~L-~~L~nLq~LnLS~N~LssL--p~l~~~L~~L~~LnLS~NkLtsLp~L~~L~sL~~Ld 82 (800)
.+|+.|++++...-.- + .+ ..||+|+.|.+++-.+..- ...-..+|+|..|++|+..++.+.++++|++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 4689999988665432 2 23 3469999999998777542 233334799999999999999999999999999999
Q ss_pred ccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCccc---chhHhhccCCCcEEEcCCCCCCch
Q 003724 83 ISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY---RAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 83 LS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~---r~~i~s~L~sLslL~LDgNpIs~~ 143 (800)
+.+=.+.....+..+..|++|+.||++.......+.. -...-..+|.|+-++.+++.+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9998888877777888999999999999877654310 011233588889999998888754
No 56
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=96.72 E-value=0.00044 Score=79.96 Aligned_cols=88 Identities=41% Similarity=0.548 Sum_probs=69.3
Q ss_pred cCCCCcEEEccCCCCCCCcCCC----CCCCCCEEEccCC--cCCCCchhhhhcCCCCCCEEEccCCCCCCCc----ccch
Q 003724 52 VSCHIVKLVLRNNALTTLRGIE----NLKSLEGLDISYN--IISTFSELEFLASLPYLLNLWLEGNPLCCSR----WYRA 121 (800)
Q Consensus 52 ~L~~L~~LnLS~NkLtsLp~L~----~L~sL~~LdLS~N--~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p----~~r~ 121 (800)
..+.+..++|++|+|..+..+. ..|+|..|+|++| .+....++..++.++ |++|.|.||||+..- .|..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~-Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLP-LEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCC-HHHeeecCCccccchhhhHHHHH
Confidence 4688999999999999886544 4589999999999 788777777777765 999999999999762 2333
Q ss_pred hHhhccCCCcEEEcCCCCCCc
Q 003724 122 QVFSYFAHPAKLKVDGKEIST 142 (800)
Q Consensus 122 ~i~s~L~sLslL~LDgNpIs~ 142 (800)
.+...| |+++.|||..+..
T Consensus 295 ~i~~~F--PKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 295 AIRELF--PKLLRLDGVEVQP 313 (585)
T ss_pred HHHHhc--chheeecCcccCc
Confidence 444456 7888999998864
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.0011 Score=72.15 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=60.4
Q ss_pred CCCCcEEeCCCCCCCCCC----CCCCCCCCcEEECCCCCCCccc-cccccCCCCcEEEccCCCCCCC---cCCCCCCCCC
Q 003724 8 LPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL---RGIENLKSLE 79 (800)
Q Consensus 8 L~~Le~LdLS~N~Ls~Ip----~L~~L~nLq~LnLS~N~LssLp-~l~~~L~~L~~LnLS~NkLtsL---p~L~~L~sL~ 79 (800)
.+.++.|||.+|.|+.+. -+.++|.|++|+|+.|.+...- ...-.+.+|+.|.|.+..+..- ..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 456888999999999864 4678999999999999998532 2323467899999999887653 2466777777
Q ss_pred EEEccCCc
Q 003724 80 GLDISYNI 87 (800)
Q Consensus 80 ~LdLS~N~ 87 (800)
.|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 77777773
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.35 E-value=0.011 Score=67.48 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred cCCCCCCcEEeCCCCCCCCCCCCCCCCCCcEEECCC-CCCCccccccccCCCCcEEEccCC-CCCCCcCCCCCCCCCEEE
Q 003724 5 LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGF-NNLRSIAAFSEVSCHIVKLVLRNN-ALTTLRGIENLKSLEGLD 82 (800)
Q Consensus 5 L~~L~~Le~LdLS~N~Ls~Ip~L~~L~nLq~LnLS~-N~LssLp~l~~~L~~L~~LnLS~N-kLtsLp~L~~L~sL~~Ld 82 (800)
+..+.+|+.|++++|.|+.+|.+ ..+|+.|.+++ +.++.+|... ...|+.|.+++| .|..+| .+|+.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEE
Confidence 34568899999999999988843 34799999987 6666666433 367889999888 665554 3456666
Q ss_pred ccCCc
Q 003724 83 ISYNI 87 (800)
Q Consensus 83 LS~N~ 87 (800)
++.|.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 65554
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.31 E-value=0.0035 Score=75.75 Aligned_cols=109 Identities=26% Similarity=0.263 Sum_probs=87.7
Q ss_pred CCCCCCcEEeCCCCCCCCCC---CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCC---cCCCCCCCCC
Q 003724 6 QLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL---RGIENLKSLE 79 (800)
Q Consensus 6 ~~L~~Le~LdLS~N~Ls~Ip---~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsL---p~L~~L~sL~ 79 (800)
..||.|+.|.+++-.+..-+ -..++|+|..||+|+..|+.+ .....+++|+.|.+.+=.+..- ..+.+|++|+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 46899999999998887643 456889999999999999988 3445689999999988777764 3688999999
Q ss_pred EEEccCCcCCCCchh-----hhhcCCCCCCEEEccCCCCCC
Q 003724 80 GLDISYNIISTFSEL-----EFLASLPYLLNLWLEGNPLCC 115 (800)
Q Consensus 80 ~LdLS~N~IssL~~L-----~~L~~LpnLr~LdLs~NpLs~ 115 (800)
.||+|..+....+-+ .....||+|+.|+.+++.+..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999999887665521 344579999999999887763
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0061 Score=65.24 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=74.1
Q ss_pred cCCCCcEEEccCCCCCCCcCCCCCCCCCEEEccCCcCCCCchhhh-hcCCCCCCEEEccCCCCCCCcccchhHhhccCCC
Q 003724 52 VSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEF-LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 130 (800)
Q Consensus 52 ~L~~L~~LnLS~NkLtsLp~L~~L~sL~~LdLS~N~IssL~~L~~-L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sL 130 (800)
.+..|+.|.+.+-.++++.++..|++|+.|.++.|.......+.. ...+|+|++|+|++|.|......+. +..+++|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 356788888999999999999999999999999994443333222 3356999999999999986654433 5667888
Q ss_pred cEEEcCCCCCCchhhHHHHHH
Q 003724 131 AKLKVDGKEISTRELWERQLI 151 (800)
Q Consensus 131 slL~LDgNpIs~~E~~~a~~l 151 (800)
..+++..++++.....+..++
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred hhhhcccCCccccccHHHHHH
Confidence 899999998887655444443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.55 E-value=0.016 Score=62.91 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=66.3
Q ss_pred CCCCCCCcEEECCCCCCCc-ccc----ccccCCCCcEEEccCCCCCCCc---------------CCCCCCCCCEEEccCC
Q 003724 27 LRKCVNLKHLDLGFNNLRS-IAA----FSEVSCHIVKLVLRNNALTTLR---------------GIENLKSLEGLDISYN 86 (800)
Q Consensus 27 L~~L~nLq~LnLS~N~Lss-Lp~----l~~~L~~L~~LnLS~NkLtsLp---------------~L~~L~sL~~LdLS~N 86 (800)
+..||.|+..+||.|.+.. .|+ .+...+.|..|.|++|.+..+- ...+-|.|+++...+|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3356777777777777653 222 2223566777777777765541 1234467777777777
Q ss_pred cCCCCchhh---hhcCCCCCCEEEccCCCCCCC--cccchhHhhccCCCcEEEcCCCCCCc
Q 003724 87 IISTFSELE---FLASLPYLLNLWLEGNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEIST 142 (800)
Q Consensus 87 ~IssL~~L~---~L~~LpnLr~LdLs~NpLs~~--p~~r~~i~s~L~sLslL~LDgNpIs~ 142 (800)
++...+... .+..-.+|+.+.+..|.|... ..+...-+.++.+|+.++|.+|.++.
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 777665421 122224667777777776533 11111223455667777777776654
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.09 E-value=0.053 Score=49.98 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=55.5
Q ss_pred hcCCCCCCcEEeCCCCCCCCCC--CCCCCCCCcEEECCCCCCCcccccccc-CCCCcEEEccCCCCCCCc--CCCCCCCC
Q 003724 4 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEV-SCHIVKLVLRNNALTTLR--GIENLKSL 78 (800)
Q Consensus 4 sL~~L~~Le~LdLS~N~Ls~Ip--~L~~L~nLq~LnLS~N~LssLp~l~~~-L~~L~~LnLS~NkLtsLp--~L~~L~sL 78 (800)
.|...++|+.+.+.. .+..++ .|..+++|+.+.+..+ +..++...+. ++.|+.+.+.. .+..++ .+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 566777788888764 566664 5777777888888775 7776654444 45788888865 555443 46677888
Q ss_pred CEEEccCCcCCCCchhhhhcCCCCCCEEEccC
Q 003724 79 EGLDISYNIISTFSELEFLASLPYLLNLWLEG 110 (800)
Q Consensus 79 ~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~ 110 (800)
+.+++..| +..++. ..+... +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHT-TTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEch-hhhcCC-CceEEEECC
Confidence 88887665 665655 556665 777777765
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.93 E-value=0.036 Score=60.22 Aligned_cols=142 Identities=23% Similarity=0.209 Sum_probs=102.7
Q ss_pred hhcCCCCCCcEEeCCCCCCCCC--C----CCCCCCCCcEEECCCCCCCccccc--------------cccCCCCcEEEcc
Q 003724 3 ESLQLLPAVETLDLSRNKFAKV--D----NLRKCVNLKHLDLGFNNLRSIAAF--------------SEVSCHIVKLVLR 62 (800)
Q Consensus 3 esL~~L~~Le~LdLS~N~Ls~I--p----~L~~L~nLq~LnLS~N~LssLp~l--------------~~~L~~L~~LnLS 62 (800)
..+.++|.|+..+||.|.|..- + .+..-+.|.+|.|++|.+-.+... ...-|.|+.....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3577899999999999998872 2 467778999999999998754321 0124889999999
Q ss_pred CCCCCCCc------CCCCCCCCCEEEccCCcCCCC--chh--hhhcCCCCCCEEEccCCCCCCC-cccchhHhhccCCCc
Q 003724 63 NNALTTLR------GIENLKSLEGLDISYNIISTF--SEL--EFLASLPYLLNLWLEGNPLCCS-RWYRAQVFSYFAHPA 131 (800)
Q Consensus 63 ~NkLtsLp------~L~~L~sL~~LdLS~N~IssL--~~L--~~L~~LpnLr~LdLs~NpLs~~-p~~r~~i~s~L~sLs 131 (800)
+|++...+ .+..-..|+.+-+..|.|..- ..+ .-+..+.+|+.|+|+.|-++-. .-|....+..++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 99998753 244446899999999988642 211 2344678999999999999854 223334455566678
Q ss_pred EEEcCCCCCCchh
Q 003724 132 KLKVDGKEISTRE 144 (800)
Q Consensus 132 lL~LDgNpIs~~E 144 (800)
.+.|.++-++...
T Consensus 246 EL~lnDClls~~G 258 (388)
T COG5238 246 ELRLNDCLLSNEG 258 (388)
T ss_pred hccccchhhcccc
Confidence 8888887776554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.24 E-value=0.091 Score=48.45 Aligned_cols=96 Identities=16% Similarity=0.317 Sum_probs=57.3
Q ss_pred hhcCCCCCCcEEeCCCCCCCCCC--CCCCCCCCcEEECCCCCCCcccccccc-CCCCcEEEccCCCCCCCc--CCCCCCC
Q 003724 3 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEV-SCHIVKLVLRNNALTTLR--GIENLKS 77 (800)
Q Consensus 3 esL~~L~~Le~LdLS~N~Ls~Ip--~L~~L~nLq~LnLS~N~LssLp~l~~~-L~~L~~LnLS~NkLtsLp--~L~~L~s 77 (800)
.+|..++.|+.+.+..+ +..++ .+..+++|+.+.+.. .+..++...+. +++|+.+.+..| ++.++ .+..+ .
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 46788889999999886 88775 688888999999976 77777765555 899999999876 77664 57787 9
Q ss_pred CCEEEccCCcCCCCchhhhhcCCCCCC
Q 003724 78 LEGLDISYNIISTFSELEFLASLPYLL 104 (800)
Q Consensus 78 L~~LdLS~N~IssL~~L~~L~~LpnLr 104 (800)
|+.+.+.. .+..++. ..|..+++|+
T Consensus 105 l~~i~~~~-~~~~i~~-~~F~~~~~l~ 129 (129)
T PF13306_consen 105 LKEINIPS-NITKIEE-NAFKNCTKLK 129 (129)
T ss_dssp --EEE-TT-B-SS-----GGG------
T ss_pred ceEEEECC-CccEECC-ccccccccCC
Confidence 99999876 6666666 6777777664
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.24 E-value=0.19 Score=57.58 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=55.5
Q ss_pred CCCCCCCcEEECCCCCCCccccccccCCCCcEEEccC-CCCCCCcCCCCCCCCCEEEccCC-cCCCCchhhhhcCCCCCC
Q 003724 27 LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN-NALTTLRGIENLKSLEGLDISYN-IISTFSELEFLASLPYLL 104 (800)
Q Consensus 27 L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~-NkLtsLp~L~~L~sL~~LdLS~N-~IssL~~L~~L~~LpnLr 104 (800)
+..+.+++.|++++|.|+.+|. ...+|+.|.+++ +.++.+|..- .++|+.|++++| .|..+|+ .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~--------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE--------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc--------ccc
Confidence 4457899999999999999983 335799999987 5677777421 468999999998 6766653 355
Q ss_pred EEEccCCCC
Q 003724 105 NLWLEGNPL 113 (800)
Q Consensus 105 ~LdLs~NpL 113 (800)
.|.|.+|..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 666665543
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.037 Score=60.82 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=44.3
Q ss_pred CCCCCCCcEEECCCCCCCc--ccccc-ccCCCCcEEEccCCCCC----CCc-CCCCCCCCCEEEccCCc-CCCCchhhhh
Q 003724 27 LRKCVNLKHLDLGFNNLRS--IAAFS-EVSCHIVKLVLRNNALT----TLR-GIENLKSLEGLDISYNI-ISTFSELEFL 97 (800)
Q Consensus 27 L~~L~nLq~LnLS~N~Lss--Lp~l~-~~L~~L~~LnLS~NkLt----sLp-~L~~L~sL~~LdLS~N~-IssL~~L~~L 97 (800)
+.+|+.|..|+|+++.+.. +.... ..-++|+.|+|++.+-. .+. -...+|+|..|||+.|. |+. .-+..+
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~ 334 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEF 334 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHH
Confidence 3445555556666555542 11111 11245555555554321 111 13467788888887764 433 323556
Q ss_pred cCCCCCCEEEccCC
Q 003724 98 ASLPYLLNLWLEGN 111 (800)
Q Consensus 98 ~~LpnLr~LdLs~N 111 (800)
..++.|++|.|+..
T Consensus 335 ~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRC 348 (419)
T ss_pred Hhcchheeeehhhh
Confidence 67777888777765
No 67
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.53 E-value=0.01 Score=63.07 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc-CCCCCCCCCEEEccCCcCCCCchhhhhcCCCCCC
Q 003724 26 NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLL 104 (800)
Q Consensus 26 ~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp-~L~~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr 104 (800)
.+......+.|||+.|++..+......++.|..|+++.|.|..+| .+..+..+..+++.+|+++..| ..++.+|+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP--KSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC--ccccccCCcc
Confidence 566777889999999999887766666788999999999999887 6788888889999999999888 4788999999
Q ss_pred EEEccCCCCC
Q 003724 105 NLWLEGNPLC 114 (800)
Q Consensus 105 ~LdLs~NpLs 114 (800)
.+++.+|++.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999999986
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=0.12 Score=57.07 Aligned_cols=107 Identities=19% Similarity=0.154 Sum_probs=73.1
Q ss_pred cCCCCCCcEEeCCCCCCCCC--C-CCCCC-CCCcEEECCCCC----CCccccccccCCCCcEEEccCCCC-CC--CcCCC
Q 003724 5 LQLLPAVETLDLSRNKFAKV--D-NLRKC-VNLKHLDLGFNN----LRSIAAFSEVSCHIVKLVLRNNAL-TT--LRGIE 73 (800)
Q Consensus 5 L~~L~~Le~LdLS~N~Ls~I--p-~L~~L-~nLq~LnLS~N~----LssLp~l~~~L~~L~~LnLS~NkL-ts--Lp~L~ 73 (800)
|..++.|..|+|+.+.+... . .+... ++|+.|+|++.. ...+..+...+++|..|+|+.|.- +. +..|.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 44566677777777766652 1 11111 578999998863 233444555689999999999854 33 24678
Q ss_pred CCCCCCEEEccCCcCCCCchhhhhcCCCCCCEEEccCC
Q 003724 74 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 111 (800)
Q Consensus 74 ~L~sL~~LdLS~N~IssL~~L~~L~~LpnLr~LdLs~N 111 (800)
.++-|++|.|++...-.-..+-.+...|.|.+|++.+.
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 89999999999887543323345778899999998774
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.01 E-value=0.065 Score=57.23 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=76.0
Q ss_pred cCCCCCCcEEeCCCCCCCCCC-CCCCCCCCcEEECCCCCCCccccccccCCCCcEEEccCCCCCCCc-CCCCCCCCCEEE
Q 003724 5 LQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLD 82 (800)
Q Consensus 5 L~~L~~Le~LdLS~N~Ls~Ip-~L~~L~nLq~LnLS~N~LssLp~l~~~L~~L~~LnLS~NkLtsLp-~L~~L~sL~~Ld 82 (800)
+......+.|||+.|++..+. .+.-++.|..|+++-|.|..+|.....+..+..+.+.+|.++.+| .+..++.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 456677889999999999886 788889999999999999999988888888999999999999998 799999999999
Q ss_pred ccCCcCC
Q 003724 83 ISYNIIS 89 (800)
Q Consensus 83 LS~N~Is 89 (800)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998854
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=79.11 E-value=1.2 Score=28.70 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=3.7
Q ss_pred CCEEEccCCcCC
Q 003724 78 LEGLDISYNIIS 89 (800)
Q Consensus 78 L~~LdLS~N~Is 89 (800)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=78.40 E-value=0.82 Score=30.98 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=9.7
Q ss_pred CCCEEEccCCcCCCCch
Q 003724 77 SLEGLDISYNIISTFSE 93 (800)
Q Consensus 77 sL~~LdLS~N~IssL~~ 93 (800)
+|++|||++|+|+.+|+
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 35566666666665554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.09 E-value=1.3 Score=28.53 Aligned_cols=9 Identities=44% Similarity=0.372 Sum_probs=2.9
Q ss_pred cEEEccCCC
Q 003724 57 VKLVLRNNA 65 (800)
Q Consensus 57 ~~LnLS~Nk 65 (800)
+.|+|++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.01 E-value=1.9 Score=29.99 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=9.8
Q ss_pred CCCcEEECCCCCCCcccc
Q 003724 31 VNLKHLDLGFNNLRSIAA 48 (800)
Q Consensus 31 ~nLq~LnLS~N~LssLp~ 48 (800)
++|+.|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 445555555555555554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.01 E-value=1.9 Score=29.99 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=9.8
Q ss_pred CCCcEEECCCCCCCcccc
Q 003724 31 VNLKHLDLGFNNLRSIAA 48 (800)
Q Consensus 31 ~nLq~LnLS~N~LssLp~ 48 (800)
++|+.|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 445555555555555554
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=76.13 E-value=2.5 Score=29.31 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=12.0
Q ss_pred CCCCCEEEccCCcCCCCch
Q 003724 75 LKSLEGLDISYNIISTFSE 93 (800)
Q Consensus 75 L~sL~~LdLS~N~IssL~~ 93 (800)
|++|+.|+|++|+|+.+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3556666666666666654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=76.13 E-value=2.5 Score=29.31 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=12.0
Q ss_pred CCCCCEEEccCCcCCCCch
Q 003724 75 LKSLEGLDISYNIISTFSE 93 (800)
Q Consensus 75 L~sL~~LdLS~N~IssL~~ 93 (800)
|++|+.|+|++|+|+.+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3556666666666666654
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=74.48 E-value=1.3 Score=29.98 Aligned_cols=16 Identities=56% Similarity=0.623 Sum_probs=7.5
Q ss_pred CcEEECCCCCCCcccc
Q 003724 33 LKHLDLGFNNLRSIAA 48 (800)
Q Consensus 33 Lq~LnLS~N~LssLp~ 48 (800)
|++|+|++|+|+.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4444555554444443
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.04 E-value=2.8 Score=49.65 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=53.4
Q ss_pred CCCCCCCEEEccCCcCCCCchhhhhc-CCCCCCEEEccCC--CCCCCcccchhHhhccCCCcEEEcCCCCCCchhhHHHH
Q 003724 73 ENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGN--PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 149 (800)
Q Consensus 73 ~~L~sL~~LdLS~N~IssL~~L~~L~-~LpnLr~LdLs~N--pLs~~p~~r~~i~s~L~sLslL~LDgNpIs~~E~~~a~ 149 (800)
.+.+.+..|+|++|+|..+..+..+. ..|+|..|+|++| .+....+... +. ...|+.+.|+|||+...-...++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k-~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LK-GLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hc-CCCHHHeeecCCccccchhhhHH
Confidence 46688999999999999887664443 6789999999999 5554433222 22 34578899999999866444443
Q ss_pred H
Q 003724 150 L 150 (800)
Q Consensus 150 ~ 150 (800)
-
T Consensus 292 y 292 (585)
T KOG3763|consen 292 Y 292 (585)
T ss_pred H
Confidence 3
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.75 E-value=3.9 Score=29.43 Aligned_cols=20 Identities=55% Similarity=0.831 Sum_probs=11.2
Q ss_pred CCCCcEEeCCCCCCCCCCCC
Q 003724 8 LPAVETLDLSRNKFAKVDNL 27 (800)
Q Consensus 8 L~~Le~LdLS~N~Ls~Ip~L 27 (800)
|++|+.|+|+.|+|+.+.++
T Consensus 1 L~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 1 LTNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CCccCEEECCCCccceecCc
Confidence 34566666666666555433
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=67.86 E-value=3.8 Score=56.28 Aligned_cols=38 Identities=42% Similarity=0.466 Sum_probs=31.4
Q ss_pred EccCCcCCCCchhhhhcCCCCCCEEEccCCCCCCCcccc
Q 003724 82 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 120 (800)
Q Consensus 82 dLS~N~IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r 120 (800)
||++|+|+.+++ ..|..|++|+.|+|++||+.|.|.+.
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccccH
Confidence 578888888887 77888888899999999998887553
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=66.83 E-value=0.29 Score=57.10 Aligned_cols=15 Identities=27% Similarity=0.062 Sum_probs=7.2
Q ss_pred CCCCEEEccCCCCCC
Q 003724 101 PYLLNLWLEGNPLCC 115 (800)
Q Consensus 101 pnLr~LdLs~NpLs~ 115 (800)
+.|+.++++.|.|..
T Consensus 262 ~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITE 276 (478)
T ss_pred hhhhhhhhhcCCccc
Confidence 344555555555543
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=65.11 E-value=2 Score=48.00 Aligned_cols=62 Identities=21% Similarity=0.165 Sum_probs=25.5
Q ss_pred CCCCCEEEccCCc-CCCCchhhhhc-CCCCCCEEEccCCC-CCCCcccchhHhhccCCCcEEEcCCCC
Q 003724 75 LKSLEGLDISYNI-ISTFSELEFLA-SLPYLLNLWLEGNP-LCCSRWYRAQVFSYFAHPAKLKVDGKE 139 (800)
Q Consensus 75 L~sL~~LdLS~N~-IssL~~L~~L~-~LpnLr~LdLs~Np-Ls~~p~~r~~i~s~L~sLslL~LDgNp 139 (800)
+++|+.|+++... +++..- ..+. .+++|+.|.+.+.. ++.. ....+...++.|+.++|.+..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l-~~l~~~c~~L~~L~l~~c~~lt~~--gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGL-SALASRCPNLETLSLSNCSNLTDE--GLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhH-HHHHhhCCCcceEccCCCCccchh--HHHHHHHhcCcccEEeeecCc
Confidence 3455555555544 333322 2222 24455555544333 2221 122333344445555555443
No 83
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=64.41 E-value=11 Score=34.44 Aligned_cols=71 Identities=20% Similarity=0.359 Sum_probs=55.6
Q ss_pred ccceEEEEEecCCcccceeEEEEeecCCeeEEEEEeeeecCCcccc--cccccccchhhHHHhhh--ccceEEEEEeeCC
Q 003724 644 MQYTVCWILEQDFMHRGREVAVLRSSENKFYVLLFGVTVDGTGSIL--NLLGCHKIEDIREVLIG--LGLQVLRVSTEMG 719 (800)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~ev~~l~ss~~klyvll~~~~~d~~~~~~--~~l~~~~~e~~~~v~~g--~glq~~r~~~~~~ 719 (800)
.+-|+||.|-..-+.+. . +..-.+.-+||=|++-. =.|-|| +=|.--|++.+++.+|| .=.||+||.-+.|
T Consensus 5 ~~lafcy~~P~v~dvv~-~--Vv~i~d~~~YV~LleY~--iegmIl~~selsr~rirsi~kllVGk~e~v~ViRVDk~KG 79 (86)
T PHA02858 5 SDLAFCYVFPNINEVTK-G--IVFVKDNIFYVKLIDYG--LEALIVNYVNVNADRAEKLKKKLVGKTINVQVIRTDKLKG 79 (86)
T ss_pred ceeEEEEecCCCCeEEE-E--EEEEeccEEEEEEecCc--cceEEecHHHHhHHHHHhhhhhhcCCeeEEEEEEECCCCC
Confidence 35689999999888875 4 44667899999999985 445454 66788899999999977 3478999977666
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.84 E-value=8.7 Score=27.66 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=6.6
Q ss_pred CCCEEEccCCcCCCC
Q 003724 77 SLEGLDISYNIISTF 91 (800)
Q Consensus 77 sL~~LdLS~N~IssL 91 (800)
+|+.|+|+.|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 344444444444433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.17 E-value=1.6 Score=45.98 Aligned_cols=81 Identities=23% Similarity=0.152 Sum_probs=45.2
Q ss_pred CcEEECCCCCCCccc-cccccCCCCcEEEccCCCCCC---CcCCC-CCCCCCEEEccCC-cCCCCchhhhhcCCCCCCEE
Q 003724 33 LKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTT---LRGIE-NLKSLEGLDISYN-IISTFSELEFLASLPYLLNL 106 (800)
Q Consensus 33 Lq~LnLS~N~LssLp-~l~~~L~~L~~LnLS~NkLts---Lp~L~-~L~sL~~LdLS~N-~IssL~~L~~L~~LpnLr~L 106 (800)
++.++.++..|.... .....++.|+.|.+.++.--. +..++ -.++|+.|+|+.| +|++.. +..+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHHH
Confidence 556666666665322 111224556666665554221 12122 3467777777755 466554 3677777888887
Q ss_pred EccCCCCC
Q 003724 107 WLEGNPLC 114 (800)
Q Consensus 107 dLs~NpLs 114 (800)
.|.+=+-.
T Consensus 182 ~l~~l~~v 189 (221)
T KOG3864|consen 182 HLYDLPYV 189 (221)
T ss_pred HhcCchhh
Confidence 77765554
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=54.03 E-value=0.51 Score=55.12 Aligned_cols=141 Identities=30% Similarity=0.271 Sum_probs=70.6
Q ss_pred hcCCCCCCcEEeCCCCCCCCC------CCCCCC-CCCcEEECCCCCCCccc-----cccccCCCCcEEEccCCCCCCC--
Q 003724 4 SLQLLPAVETLDLSRNKFAKV------DNLRKC-VNLKHLDLGFNNLRSIA-----AFSEVSCHIVKLVLRNNALTTL-- 69 (800)
Q Consensus 4 sL~~L~~Le~LdLS~N~Ls~I------p~L~~L-~nLq~LnLS~N~LssLp-----~l~~~L~~L~~LnLS~NkLtsL-- 69 (800)
.+..++.|+.|+|++|.+... ..+... ..|++|.+..|.++... ........|+.|+++.|.+...
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 455566677777777776642 123332 45666666666665321 1222245666667777766331
Q ss_pred ----cCCC----CCCCCCEEEccCCcCCCCch---hhhhcCCCC-CCEEEccCCCCCCCc-ccchhHhhcc-CCCcEEEc
Q 003724 70 ----RGIE----NLKSLEGLDISYNIISTFSE---LEFLASLPY-LLNLWLEGNPLCCSR-WYRAQVFSYF-AHPAKLKV 135 (800)
Q Consensus 70 ----p~L~----~L~sL~~LdLS~N~IssL~~---L~~L~~Lpn-Lr~LdLs~NpLs~~p-~~r~~i~s~L-~sLslL~L 135 (800)
..+. ...+|++|.++++.++...- ...+...+. +..|++..|.+.+.- ..-...+... ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 1222 35566667777666653211 023444444 555666666665330 0001111222 23356666
Q ss_pred CCCCCCchh
Q 003724 136 DGKEISTRE 144 (800)
Q Consensus 136 DgNpIs~~E 144 (800)
..|.++..+
T Consensus 270 ~~nsi~~~~ 278 (478)
T KOG4308|consen 270 SRNSITEKG 278 (478)
T ss_pred hcCCccccc
Confidence 666665543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=50.71 E-value=9.7 Score=27.62 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=12.6
Q ss_pred CCCCEEEccCCcCCCCch
Q 003724 76 KSLEGLDISYNIISTFSE 93 (800)
Q Consensus 76 ~sL~~LdLS~N~IssL~~ 93 (800)
++|+.|++++|+|+.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777777777777765
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=47.14 E-value=12 Score=27.11 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=13.6
Q ss_pred CCCcEEEccCCCCCCCcCC
Q 003724 54 CHIVKLVLRNNALTTLRGI 72 (800)
Q Consensus 54 ~~L~~LnLS~NkLtsLp~L 72 (800)
++|+.|++++|+|+.+|.+
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4677777888877777654
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=46.45 E-value=13 Score=41.58 Aligned_cols=129 Identities=21% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCCCCcEEeCCCC-CCCC--C-CCCCCCCCCcEEECCCC--CCCccc----cccccCCCCcEEEccCCC-CCCC--cCCC
Q 003724 7 LLPAVETLDLSRN-KFAK--V-DNLRKCVNLKHLDLGFN--NLRSIA----AFSEVSCHIVKLVLRNNA-LTTL--RGIE 73 (800)
Q Consensus 7 ~L~~Le~LdLS~N-~Ls~--I-p~L~~L~nLq~LnLS~N--~LssLp----~l~~~L~~L~~LnLS~Nk-LtsL--p~L~ 73 (800)
..+.|+.|.+.+. .++. + +....++.|+.|+++++ .+...+ .....+.+|+.|++++.. ++.. ..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3567777777665 3443 2 34567789999999873 222111 233346889999999988 5543 3333
Q ss_pred -CCCCCCEEEccCCc-CCCCchhhhhcCCCCCCEEEccCCCCCCCcccchhHhhccCCCcEEEcC
Q 003724 74 -NLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 136 (800)
Q Consensus 74 -~L~sL~~LdLS~N~-IssL~~L~~L~~LpnLr~LdLs~NpLs~~p~~r~~i~s~L~sLslL~LD 136 (800)
.+++|+.|.+.+.. +++..-......+++|+.|+|++........+... ...++.++.+.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhh
Confidence 38899999977766 66554445566788899999997766522222222 3345555554433
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=37.84 E-value=15 Score=25.05 Aligned_cols=13 Identities=54% Similarity=0.641 Sum_probs=5.1
Q ss_pred CCCCEEEccCCcC
Q 003724 76 KSLEGLDISYNII 88 (800)
Q Consensus 76 ~sL~~LdLS~N~I 88 (800)
++|+.|+|++|.|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3444444444444
No 91
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=35.69 E-value=37 Score=32.26 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.4
Q ss_pred EEEEEeeCCceEEEEeccHHHHHHHhhhee
Q 003724 711 VLRVSTEMGATYLLMTRSIEKSRQLFCTLQ 740 (800)
Q Consensus 711 ~~r~~~~~~~~~~f~t~~~~~~~~~~~~~~ 740 (800)
|.||...+|..|||-+.+.|+..+=+..|+
T Consensus 86 VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN 115 (119)
T PF15410_consen 86 VFRLRTADGSEYLFQASDEEEMNEWIDAIN 115 (119)
T ss_dssp EEEEE-TTS-EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEECCCHHHHHHHHHHHh
Confidence 789999999999999999999887666554
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=26.98 E-value=47 Score=23.80 Aligned_cols=12 Identities=50% Similarity=0.628 Sum_probs=5.5
Q ss_pred CCCEEEccCCcC
Q 003724 77 SLEGLDISYNII 88 (800)
Q Consensus 77 sL~~LdLS~N~I 88 (800)
+|+.|+|++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 93
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=23.11 E-value=3.6e+02 Score=26.23 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=66.6
Q ss_pred ccccCCchhhhhccceEE--EEEecC-Ccccce---eEEEEeecCC-eeEEEEEeeeecCCcccccccccccch-hhHHH
Q 003724 632 KNVADSKSHETCMQYTVC--WILEQD-FMHRGR---EVAVLRSSEN-KFYVLLFGVTVDGTGSILNLLGCHKIE-DIREV 703 (800)
Q Consensus 632 ~~~a~~~~~e~c~~~~~~--~~~~~~-~~~~~~---ev~~l~ss~~-klyvll~~~~~d~~~~~~~~l~~~~~e-~~~~v 703 (800)
++|..-+.+|.+---++| |.|-++ ..|+|| .+-||....+ +-|=|| |-.|+. ++|+.-|.|= ++.=.
T Consensus 10 ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~Riv--mR~~~~---~kv~lN~~i~~~~~~~ 84 (130)
T smart00160 10 VEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIV--MRRDGV---LKVCANHPIFKSMTLK 84 (130)
T ss_pred ccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEE--EEECCC---ceEEeccEecCCcEEe
Confidence 567788999999999999 888765 679999 6667777777 777776 446664 4555555442 11111
Q ss_pred hhhccceEEEEEe---eCC----ceEEEEeccHHHHHHHhhhe
Q 003724 704 LIGLGLQVLRVST---EMG----ATYLLMTRSIEKSRQLFCTL 739 (800)
Q Consensus 704 ~~g~glq~~r~~~---~~~----~~~~f~t~~~~~~~~~~~~~ 739 (800)
..+=+.++++..- +++ ++|+.=..+.+.|.++...+
T Consensus 85 ~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~ 127 (130)
T smart00160 85 PLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIF 127 (130)
T ss_pred ecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHH
Confidence 1222345554422 444 67777777888888776543
Done!