Query 003724
Match_columns 800
No_of_seqs 219 out of 3160
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 17:41:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003724.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1774-1778//hhsearch_pdb/003724hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ds9_A Outer arm dynein; leuci 1.0 1 1 135.8 -9.2 149 1-151 40-195 (198)
2 1dce_A Protein (RAB geranylger 1.0 1 1 124.2 13.4 125 10-135 442-567 (567)
3 4g8a_A TOLL-like receptor 4; l 1.0 1 1 122.5 14.1 134 9-145 52-190 (635)
4 3e6j_A Variable lymphocyte rec 1.0 1 1 120.2 14.0 132 8-144 39-175 (229)
5 3m19_A Variable lymphocyte rec 1.0 1 1 118.7 16.8 138 2-143 52-194 (251)
6 1m9s_A Internalin B; cell inva 1.0 1 1 118.3 14.1 127 7-142 41-167 (605)
7 1a9n_A U2A', U2A'; complex (nu 1.0 1 1 118.0 8.4 148 4-154 14-164 (176)
8 2v9t_B SLIT homolog 2 protein 1.0 1 1 117.4 16.0 133 9-145 32-169 (220)
9 2xot_A Amphoterin-induced prot 1.0 1 1 117.1 11.9 134 7-144 62-205 (361)
10 1p9a_G Platelet glycoprotein I 1.0 1 1 116.9 15.9 64 5-68 51-114 (290)
No 1
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=1.00 E-value=1 Score=135.83 Aligned_cols=149 Identities=33% Similarity=0.450 Sum_probs=127.4
Q ss_pred CCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 95010799988699687999999879899998759988899888665552367897699854888999768889999988
Q 003724 1 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 80 (800)
Q Consensus 1 IPesL~~L~sLq~LdLS~N~Ls~IpsL~~L~sLk~LnLS~N~LssLp~l~~lL~~Lk~LnLS~N~LtsLp~L~~L~sL~~ 80 (800)
+|..|..+++|+.|+|++|.+..+|.+..+++|+.|++++|.|..++.....+++|+.|++++|.++.++.+..+++|+.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCE
T ss_conf 45788338877889898998865601014888798988899766340224307767899880786786875243898898
Q ss_pred EECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCC-------CCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf 975589689886033406999987998359989878-------66102674206999589839998991456799999
Q 003724 81 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-------RWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 151 (800)
Q Consensus 81 LDLS~N~IssL~eL~~L~sLpnLr~L~LsgNpIs~~-------~~yr~~ils~L~~LklL~LDgnpIs~~Er~~a~~l 151 (800)
|++++|.|..++.+..+..+++|+.|++++|++.+. ..++..++..++ ++..||+++++..++..+...
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~--~L~~Ld~~~i~~~e~~~a~~~ 195 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP--NLKKLDGMPVDVDEREQANVA 195 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS--SCSEECCGGGTTTTTTHHHHH
T ss_pred EECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC--CCEEECCCCCCHHHHHHHHHH
T ss_conf 9788996886067788750899898984598265545532104779999998688--768977951698998887764
No 2
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=1.00 E-value=1 Score=124.16 Aligned_cols=125 Identities=25% Similarity=0.339 Sum_probs=113.7
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 88699687999999879899998759988899888665552367897699854888999768889999988975589689
Q 003724 10 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIIS 89 (800)
Q Consensus 10 sLq~LdLS~N~Ls~IpsL~~L~sLk~LnLS~N~LssLp~l~~lL~~Lk~LnLS~N~LtsLp~L~~L~sL~~LDLS~N~Is 89 (800)
.|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+.+|.....+++|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 76299966999987767100435758136732310012654057787989899998999845578998857799899899
Q ss_pred CCC-HHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf 886-0334069999879983599898786610267420699958983
Q 003724 90 TFS-ELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 135 (800)
Q Consensus 90 sL~-eL~~L~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~LklL~L 135 (800)
.+. + ..+..+++|+.|+|++|+++..+.+...++..++.++.+.|
T Consensus 522 ~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-HHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 99981-78746989798986598388882289999987861582379
No 3
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=1.00 E-value=1 Score=122.47 Aligned_cols=134 Identities=20% Similarity=0.236 Sum_probs=116.2
Q ss_pred CCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCC--CCCCCCCCCEEEC
Q ss_conf 98869968799999987--98999987599888998886655523-6789769985488899976--8889999988975
Q 003724 9 PAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR--GIENLKSLEGLDI 83 (800)
Q Consensus 9 ~sLq~LdLS~N~Ls~Ip--sL~~L~sLk~LnLS~N~LssLp~l~~-lL~~Lk~LnLS~N~LtsLp--~L~~L~sL~~LDL 83 (800)
++++.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++..+ .+++|+.|+|++|+|+.++ .|..+++|+.|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCCEEEEECCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 68778980299889889789728999888989798489869567627999998976398489879788657989999989
Q ss_pred CCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf 58968988603340699998799835998987866102674206999589839998991456
Q 003724 84 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 145 (800)
Q Consensus 84 S~N~IssL~eL~~L~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~LklL~LDgnpIs~~Er 145 (800)
++|.|+.+++ ..+..+++|+.|++++|.+...+ ....+..+..++.+.|.+|.+.....
T Consensus 132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCC--CCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCCCCCH-HHHHCCCCCCEECCCCCCCCCCC--CCHHHCCCHHHHHHCCCCCCCCCCCC
T ss_conf 9996898784-56523766676025667666677--81332234022331256750111265
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=1.00 E-value=1 Score=120.24 Aligned_cols=132 Identities=23% Similarity=0.227 Sum_probs=115.8
Q ss_pred CCCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCC--CCCCCCCCCEEE
Q ss_conf 998869968799999987--98999987599888998886655523-6789769985488899976--888999998897
Q 003724 8 LPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR--GIENLKSLEGLD 82 (800)
Q Consensus 8 L~sLq~LdLS~N~Ls~Ip--sL~~L~sLk~LnLS~N~LssLp~l~~-lL~~Lk~LnLS~N~LtsLp--~L~~L~sL~~LD 82 (800)
.++|+.|+|++|.|..++ .+..+++|+.|+|++|.|..++...+ .+++|+.|+|++|.|+.++ .+..+++|+.|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCHHHCEEE
T ss_conf 99987898689905830988865763775878989989985964634678838888999958720966837354318276
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCHH
Q ss_conf 55896898860334069999879983599898786610267420699958983999899145
Q 003724 83 ISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 144 (800)
Q Consensus 83 LS~N~IssL~eL~~L~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~LklL~LDgnpIs~~E 144 (800)
|++|.|..++. .+..+++|+.|+|++|.+...+. ..+..++.++.+.|.+|++.+..
T Consensus 119 Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCH---HHHHCCCCCCEEEEECCCCCCCC
T ss_conf 45773650584--51457777789999994886599---99717788788985099734776
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=1.00 E-value=1 Score=118.73 Aligned_cols=138 Identities=21% Similarity=0.257 Sum_probs=114.4
Q ss_pred CHHCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCC--CCCCC
Q ss_conf 501079998869968799999987--98999987599888998886655523-67897699854888999768--88999
Q 003724 2 DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLRG--IENLK 76 (800)
Q Consensus 2 PesL~~L~sLq~LdLS~N~Ls~Ip--sL~~L~sLk~LnLS~N~LssLp~l~~-lL~~Lk~LnLS~N~LtsLp~--L~~L~ 76 (800)
+..|..+++|+.|+|++|.|..++ .+..+++|+.|++++|.++.++...+ .+++|+.|+|++|.|+.++. +..++
T Consensus 52 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 76743765688898999928842975741677689898889955646964733457777898379827776955720477
Q ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCH
Q ss_conf 9988975589689886033406999987998359989878661026742069995898399989914
Q 003724 77 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 143 (800)
Q Consensus 77 sL~~LDLS~N~IssL~eL~~L~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~LklL~LDgnpIs~~ 143 (800)
+|+.|+|++|.|..+++ ..+..+++|+.|+|++|.+...+ ...+..++.++.+.|.+|++.+.
T Consensus 132 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVP---HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCEEECCCCCCCCCCH-HHCCCCCCCCEEECCCCCCCCCC---HHHHHCCCCCCEEEEECCCEECC
T ss_conf 50389886994773398-78085768898989999477069---88974778888899609961578
No 6
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=1.00 E-value=1 Score=118.28 Aligned_cols=127 Identities=24% Similarity=0.316 Sum_probs=63.9
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99988699687999999879899998759988899888665552367897699854888999768889999988975589
Q 003724 7 LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYN 86 (800)
Q Consensus 7 ~L~sLq~LdLS~N~Ls~IpsL~~L~sLk~LnLS~N~LssLp~l~~lL~~Lk~LnLS~N~LtsLp~L~~L~sL~~LDLS~N 86 (800)
.|+.|+.|+|++|.|..++.+..+++|+.|+|++|.|..+++ ...+++|+.|+|++|.|..++.+..+++|+.|+|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS
T ss_pred CCCCCCEEECCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHH-HCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEEECCC
T ss_conf 488787898739988887577469999999936897888732-3368998899894998999745636999889990599
Q ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 68988603340699998799835998987866102674206999589839998991
Q 003724 87 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 142 (800)
Q Consensus 87 ~IssL~eL~~L~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~LklL~LDgnpIs~ 142 (800)
.|..++. +..+++|+.|+|++|.+... ..+..++.++.+.|.+|.+..
T Consensus 120 ~l~~l~~---l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 120 GISDING---LVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCCCCGG---GGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCCC
T ss_pred CCCCCCC---CCCCCCCCEEECCCCCCCCC-----HHHCCCCCCCEEECCCCCCCC
T ss_conf 7889710---04788458898989845775-----434446788899894882788
No 7
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=1.00 E-value=1 Score=118.02 Aligned_cols=148 Identities=22% Similarity=0.280 Sum_probs=122.1
Q ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-C-CCCCCCCCE
Q ss_conf 1079998869968799999987989999-875998889988866555236789769985488899976-8-889999988
Q 003724 4 SLQLLPAVETLDLSRNKFAKVDNLRKCV-NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-G-IENLKSLEG 80 (800)
Q Consensus 4 sL~~L~sLq~LdLS~N~Ls~IpsL~~L~-sLk~LnLS~N~LssLp~l~~lL~~Lk~LnLS~N~LtsLp-~-L~~L~sL~~ 80 (800)
.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.|+.++. ...+++|+.|++++|.|+.++ . +..+++|+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred HCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCE
T ss_conf 5388678508984189876267763067888789897998875535-344877899989999651317102304887799
Q ss_pred EECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 97558968988603340699998799835998987866102674206999589839998991456799999984
Q 003724 81 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIAR 154 (800)
Q Consensus 81 LDLS~N~IssL~eL~~L~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~LklL~LDgnpIs~~Er~~a~~lfs~ 154 (800)
|++++|.|..++.+..+..+++|+.|++++|+++..+.++..++..++.++.+++..+. ..++..+..+|..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~--~~~~~~~~~~~~~ 164 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK--LKERQEAEKMFKG 164 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC--HHHHHHHHHTTC-
T ss_pred EECCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEECCCCCC--HHHHHHHHHHHHC
T ss_conf 97999947733526765168987889850997887371999999878856162797399--9999999999850
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=1.00 E-value=1 Score=117.40 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=116.7
Q ss_pred CCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEEC
Q ss_conf 98869968799999987--98999987599888998886655-52367897699854888999768--889999988975
Q 003724 9 PAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLRG--IENLKSLEGLDI 83 (800)
Q Consensus 9 ~sLq~LdLS~N~Ls~Ip--sL~~L~sLk~LnLS~N~LssLp~-l~~lL~~Lk~LnLS~N~LtsLp~--L~~L~sL~~LDL 83 (800)
++|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.+.+ ....+++|+.|+|++|.|+.++. +..+++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 67799989899089869757328889999999999489739878508757898889999488369767267878898889
Q ss_pred CCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf 58968988603340699998799835998987866102674206999589839998991456
Q 003724 84 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 145 (800)
Q Consensus 84 S~N~IssL~eL~~L~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~LklL~LDgnpIs~~Er 145 (800)
++|.|..+++ ..+..+++|+.|+|++|.+...+ ...|..++.++.+.|.+|++.+...
T Consensus 112 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 112 NANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEECH-HHCCCCCCCCEEECCCCCCCEEC---HHHHHCCCCCCEEEECCCCCCCCCC
T ss_conf 9997887688-78389878798989999088779---9887078787989847989678876
No 9
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=117.13 Aligned_cols=134 Identities=25% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCCCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCC--CCCCCCCCCEE
Q ss_conf 9998869968799999987--98999987599888998886655523-6789769985488899976--88899999889
Q 003724 7 LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR--GIENLKSLEGL 81 (800)
Q Consensus 7 ~L~sLq~LdLS~N~Ls~Ip--sL~~L~sLk~LnLS~N~LssLp~l~~-lL~~Lk~LnLS~N~LtsLp--~L~~L~sL~~L 81 (800)
.+++|+.|+|++|.|..++ .|..+++|+.|+|++|.|+.++...+ .+++|+.|+|++|.|..++ .+..+++|+.|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCEECHHHHCCCCCCCEE
T ss_conf 02256998999994886384014599888999999995773798785788688999999990647898780784248988
Q ss_pred ECCCCCCCCCCHHHHH---CCCCCCCEEECCCCCCCCCCCCCHHHHHCCCC--CCEEECCCCCCCCHH
Q ss_conf 7558968988603340---69999879983599898786610267420699--958983999899145
Q 003724 82 DISYNIISTFSELEFL---ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLKVDGKEISTRE 144 (800)
Q Consensus 82 DLS~N~IssL~eL~~L---~sLpnLr~L~LsgNpIs~~~~yr~~ils~L~~--LklL~LDgnpIs~~E 144 (800)
+|++|.|+.++. ..+ ..+++|+.|+|++|.+...+ ...+..++. ++.+.|.+|++.++.
T Consensus 142 ~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 142 YLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp ECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred ECCCCCCCEECH-HHHCCCCCCCCCCEEECCCCCCCCCC---HHHHHHCCHHHCCEEEECCCCCCCCC
T ss_conf 998995774098-89447556885888989899778548---78853340735264994598856886
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=1.00 E-value=1 Score=116.87 Aligned_cols=64 Identities=25% Similarity=0.282 Sum_probs=20.5
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 0799988699687999999879899998759988899888665552367897699854888999
Q 003724 5 LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT 68 (800)
Q Consensus 5 L~~L~sLq~LdLS~N~Ls~IpsL~~L~sLk~LnLS~N~LssLp~l~~lL~~Lk~LnLS~N~Lts 68 (800)
|..+++|+.|+|++|.|+.++....+++|+.|++++|.|..++.....+++|+.|++++|.|+.
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~ 114 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCC
T ss_conf 6067887888899994675468999886999989999677574435058878999887995854
Done!