Query 003725
Match_columns 800
No_of_seqs 772 out of 3884
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 04:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.9E-80 8.4E-85 709.7 68.4 631 103-798 48-680 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.3E-76 2.8E-81 680.6 73.0 651 74-776 55-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.2E-67 2.6E-72 590.9 70.1 543 191-776 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-66 3.9E-71 581.5 69.4 543 104-681 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.3E-60 7.2E-65 531.6 53.3 476 191-773 84-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-59 2.4E-64 527.4 55.4 523 103-729 84-609 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-38 4.1E-43 376.1 86.7 681 76-800 198-896 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-37 5.5E-42 366.4 84.6 678 77-799 131-861 (899)
9 PRK11447 cellulose synthase su 100.0 2.1E-27 4.6E-32 279.9 72.3 637 79-767 36-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1.7E-26 3.6E-31 272.4 78.6 614 75-723 66-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 6.8E-22 1.5E-26 221.8 71.3 217 77-328 50-276 (987)
12 PRK09782 bacteriophage N4 rece 100.0 5.3E-22 1.1E-26 222.7 67.4 217 115-366 53-279 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.8E-20 4E-25 195.5 60.1 644 106-798 41-739 (1018)
14 KOG2002 TPR-containing nuclear 99.9 9.4E-20 2E-24 190.3 59.1 571 87-685 146-756 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.9E-26 193.2 40.0 436 197-680 51-489 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 9.7E-22 2.1E-26 194.1 37.0 432 161-603 50-484 (966)
17 KOG2076 RNA polymerase III tra 99.9 5.1E-17 1.1E-21 169.1 57.0 653 106-800 139-891 (895)
18 TIGR00990 3a0801s09 mitochondr 99.9 4.4E-18 9.5E-23 188.8 51.5 256 486-769 307-571 (615)
19 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.5E-24 191.5 35.5 301 203-509 44-354 (389)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-17 2.6E-22 185.3 52.6 254 417-674 308-571 (615)
21 PRK11788 tetratricopeptide rep 99.9 5.2E-19 1.1E-23 186.5 35.1 302 166-474 42-354 (389)
22 PRK15174 Vi polysaccharide exp 99.9 4.8E-17 1E-21 179.4 46.2 331 163-502 46-381 (656)
23 PRK10049 pgaA outer membrane p 99.9 1.9E-16 4.1E-21 178.8 51.8 422 227-690 13-470 (765)
24 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.6E-21 176.4 48.1 358 170-536 16-380 (656)
25 PRK10049 pgaA outer membrane p 99.8 4.4E-16 9.4E-21 175.9 50.3 432 179-641 2-458 (765)
26 KOG0495 HAT repeat protein [RN 99.8 5E-13 1.1E-17 134.2 64.4 604 86-767 266-878 (913)
27 PRK14574 hmsH outer membrane p 99.8 5.4E-15 1.2E-19 163.2 53.2 451 268-776 38-518 (822)
28 PRK14574 hmsH outer membrane p 99.8 7.9E-15 1.7E-19 161.9 53.5 203 447-685 301-522 (822)
29 KOG2076 RNA polymerase III tra 99.8 4.7E-14 1E-18 147.3 54.2 603 167-800 147-845 (895)
30 KOG0495 HAT repeat protein [RN 99.8 2.2E-11 4.7E-16 122.7 62.7 492 178-694 365-865 (913)
31 KOG4422 Uncharacterized conser 99.8 8.8E-14 1.9E-18 132.5 42.4 179 170-352 126-330 (625)
32 KOG2003 TPR repeat-containing 99.8 2.7E-14 5.8E-19 136.7 36.7 474 235-755 207-709 (840)
33 KOG4422 Uncharacterized conser 99.7 5.9E-13 1.3E-17 127.0 44.1 312 194-510 116-470 (625)
34 KOG2003 TPR repeat-containing 99.7 1.8E-13 3.8E-18 131.2 38.5 491 157-695 199-709 (840)
35 KOG1915 Cell cycle control pro 99.7 3.3E-11 7.2E-16 116.8 46.3 438 105-571 72-538 (677)
36 KOG0547 Translocase of outer m 99.7 3.4E-13 7.4E-18 131.0 32.4 413 304-768 120-565 (606)
37 KOG1915 Cell cycle control pro 99.7 1E-10 2.2E-15 113.5 48.8 386 276-672 153-583 (677)
38 KOG4318 Bicoid mRNA stability 99.6 5.3E-12 1.2E-16 131.4 37.9 585 139-783 5-638 (1088)
39 KOG4318 Bicoid mRNA stability 99.6 6.4E-12 1.4E-16 130.9 37.8 546 184-799 15-620 (1088)
40 KOG1173 Anaphase-promoting com 99.6 1.1E-11 2.5E-16 123.0 36.6 282 437-785 243-532 (611)
41 PRK10747 putative protoheme IX 99.6 3.7E-12 8.1E-17 132.5 35.6 223 410-673 160-389 (398)
42 KOG1155 Anaphase-promoting com 99.6 3.3E-10 7.2E-15 109.9 42.7 325 192-532 162-490 (559)
43 TIGR00540 hemY_coli hemY prote 99.6 1.2E-11 2.6E-16 129.7 35.8 85 588-673 312-398 (409)
44 PRK10747 putative protoheme IX 99.6 2.7E-11 6E-16 126.1 36.9 281 207-499 97-387 (398)
45 TIGR00540 hemY_coli hemY prote 99.6 2.4E-11 5.1E-16 127.4 35.7 292 344-638 94-398 (409)
46 KOG0547 Translocase of outer m 99.6 6.9E-11 1.5E-15 115.3 34.8 221 448-673 336-565 (606)
47 KOG1173 Anaphase-promoting com 99.6 4E-10 8.6E-15 112.3 40.8 506 158-692 15-534 (611)
48 COG2956 Predicted N-acetylgluc 99.5 3.4E-11 7.3E-16 111.2 30.1 285 208-501 49-346 (389)
49 PF13429 TPR_15: Tetratricopep 99.5 4.1E-14 8.9E-19 140.8 12.3 257 201-463 15-273 (280)
50 KOG2047 mRNA splicing factor [ 99.5 5.2E-08 1.1E-12 98.8 53.8 328 333-666 348-715 (835)
51 KOG1155 Anaphase-promoting com 99.5 1.1E-09 2.4E-14 106.3 40.4 290 236-532 234-531 (559)
52 KOG4162 Predicted calmodulin-b 99.5 2.3E-09 5E-14 111.0 44.7 489 168-674 236-783 (799)
53 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.2E-18 137.9 12.8 260 234-500 13-275 (280)
54 COG2956 Predicted N-acetylgluc 99.5 5.8E-11 1.2E-15 109.7 28.9 272 242-520 48-327 (389)
55 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.4E-16 125.9 26.1 286 209-505 334-623 (638)
56 KOG0985 Vesicle coat protein c 99.5 3.2E-08 7E-13 104.9 51.4 536 197-795 609-1269(1666)
57 KOG3785 Uncharacterized conser 99.5 8.8E-10 1.9E-14 103.0 35.7 405 166-597 29-450 (557)
58 KOG1126 DNA-binding cell divis 99.5 1.6E-11 3.4E-16 124.8 26.2 287 174-473 334-626 (638)
59 COG3071 HemY Uncharacterized e 99.5 3.7E-10 8E-15 108.1 33.7 291 347-678 97-394 (400)
60 KOG3785 Uncharacterized conser 99.5 5.1E-09 1.1E-13 98.0 38.9 452 201-684 29-498 (557)
61 KOG0985 Vesicle coat protein c 99.5 2.3E-07 5E-12 98.7 53.9 623 72-767 509-1306(1666)
62 COG3071 HemY Uncharacterized e 99.5 8.8E-10 1.9E-14 105.5 33.1 284 172-464 97-387 (400)
63 KOG4162 Predicted calmodulin-b 99.4 4.8E-08 1E-12 101.5 48.0 130 612-768 652-782 (799)
64 KOG1156 N-terminal acetyltrans 99.4 3E-08 6.4E-13 100.9 45.3 422 243-676 21-470 (700)
65 KOG1156 N-terminal acetyltrans 99.4 1.9E-08 4.1E-13 102.3 43.0 162 162-328 11-172 (700)
66 KOG1129 TPR repeat-containing 99.4 9.2E-11 2E-15 108.3 20.8 237 437-680 222-462 (478)
67 PF12569 NARP1: NMDA receptor- 99.4 2.6E-08 5.5E-13 104.6 41.2 292 165-466 10-333 (517)
68 KOG1127 TPR repeat-containing 99.4 8.1E-08 1.8E-12 102.3 43.7 567 159-776 492-1110(1238)
69 KOG3617 WD40 and TPR repeat-co 99.4 7.4E-07 1.6E-11 93.0 49.5 579 84-769 741-1359(1416)
70 KOG1129 TPR repeat-containing 99.3 1.5E-10 3.3E-15 106.9 18.6 231 163-398 227-459 (478)
71 KOG2376 Signal recognition par 99.3 8.4E-08 1.8E-12 96.6 38.6 439 165-632 18-513 (652)
72 KOG2376 Signal recognition par 99.3 1.8E-07 3.9E-12 94.3 40.9 450 198-693 16-505 (652)
73 KOG2047 mRNA splicing factor [ 99.3 2.2E-06 4.8E-11 87.3 61.6 465 196-688 104-630 (835)
74 PF12569 NARP1: NMDA receptor- 99.3 1.5E-07 3.2E-12 98.9 41.7 297 196-501 6-333 (517)
75 KOG1127 TPR repeat-containing 99.3 9E-07 1.9E-11 94.6 46.8 159 77-256 498-657 (1238)
76 KOG3616 Selective LIM binding 99.3 6.2E-07 1.3E-11 92.3 43.6 547 118-799 744-1349(1636)
77 KOG1174 Anaphase-promoting com 99.3 6E-07 1.3E-11 86.4 40.6 399 158-572 96-503 (564)
78 PRK12370 invasion protein regu 99.3 5E-09 1.1E-13 114.4 30.6 150 315-466 320-469 (553)
79 PRK12370 invasion protein regu 99.3 2.1E-09 4.6E-14 117.2 27.5 266 192-467 254-535 (553)
80 TIGR02521 type_IV_pilW type IV 99.3 2.9E-09 6.3E-14 103.6 25.9 199 159-361 31-230 (234)
81 PF13041 PPR_2: PPR repeat fam 99.3 1.9E-11 4.1E-16 84.1 6.8 50 643-692 1-50 (50)
82 TIGR02521 type_IV_pilW type IV 99.3 4.3E-09 9.3E-14 102.4 26.2 97 194-292 31-127 (234)
83 KOG1840 Kinesin light chain [C 99.2 4.8E-09 1E-13 108.4 25.7 243 405-672 201-477 (508)
84 PF13041 PPR_2: PPR repeat fam 99.2 2.4E-11 5.1E-16 83.6 5.7 50 738-787 1-50 (50)
85 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3E-13 105.0 28.4 241 369-638 200-478 (508)
86 KOG3617 WD40 and TPR repeat-co 99.2 1.5E-06 3.1E-11 90.9 41.2 256 161-465 728-994 (1416)
87 KOG1174 Anaphase-promoting com 99.2 1.7E-06 3.7E-11 83.4 37.9 292 347-680 209-504 (564)
88 KOG4340 Uncharacterized conser 99.2 3E-08 6.5E-13 90.8 24.2 430 302-779 13-451 (459)
89 KOG3616 Selective LIM binding 99.2 4.5E-06 9.7E-11 86.2 42.2 336 376-798 714-1057(1636)
90 KOG0548 Molecular co-chaperone 99.1 4.4E-07 9.5E-12 90.8 31.8 405 271-692 9-471 (539)
91 PRK11189 lipoprotein NlpI; Pro 99.0 1.8E-07 3.8E-12 93.3 27.0 95 406-502 67-161 (296)
92 COG3063 PilF Tfp pilus assembl 99.0 2.5E-07 5.4E-12 82.3 24.4 21 445-465 180-200 (250)
93 COG3063 PilF Tfp pilus assembl 99.0 3.6E-07 7.8E-12 81.3 25.1 194 267-464 38-233 (250)
94 KOG0624 dsRNA-activated protei 99.0 1.7E-05 3.6E-10 74.9 35.1 317 157-502 36-370 (504)
95 PRK11189 lipoprotein NlpI; Pro 99.0 3.4E-07 7.4E-12 91.2 26.5 150 208-361 40-192 (296)
96 cd05804 StaR_like StaR_like; a 98.9 5.4E-06 1.2E-10 86.3 34.8 89 342-430 122-213 (355)
97 cd05804 StaR_like StaR_like; a 98.9 5E-06 1.1E-10 86.5 34.5 196 478-674 119-336 (355)
98 KOG0548 Molecular co-chaperone 98.9 1.7E-05 3.7E-10 79.7 35.5 407 201-642 9-458 (539)
99 KOG0624 dsRNA-activated protei 98.9 4.3E-05 9.3E-10 72.2 34.9 332 263-641 37-372 (504)
100 KOG4340 Uncharacterized conser 98.9 5E-06 1.1E-10 76.6 28.2 314 162-498 13-335 (459)
101 KOG2053 Mitochondrial inherita 98.9 0.00019 4.1E-09 76.9 46.7 223 171-400 21-258 (932)
102 PRK04841 transcriptional regul 98.8 4.1E-05 8.8E-10 90.7 39.7 332 239-570 384-761 (903)
103 PF04733 Coatomer_E: Coatomer 98.8 3.9E-07 8.4E-12 89.2 17.6 252 166-467 8-265 (290)
104 KOG1125 TPR repeat-containing 98.8 2.6E-06 5.6E-11 86.2 23.1 268 448-762 295-564 (579)
105 PRK04841 transcriptional regul 98.8 3.5E-05 7.6E-10 91.2 36.8 59 580-638 696-759 (903)
106 PF04733 Coatomer_E: Coatomer 98.7 8.6E-07 1.9E-11 86.8 17.9 151 342-502 110-265 (290)
107 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.7E-13 61.4 3.5 33 735-767 2-34 (34)
108 KOG1125 TPR repeat-containing 98.6 7.1E-06 1.5E-10 83.1 22.3 88 309-397 295-382 (579)
109 PLN02789 farnesyltranstransfer 98.6 4.3E-05 9.3E-10 76.0 26.8 131 317-450 126-267 (320)
110 PLN02789 farnesyltranstransfer 98.6 6.5E-05 1.4E-09 74.7 27.1 204 312-520 50-267 (320)
111 PRK10370 formate-dependent nit 98.5 1.6E-05 3.5E-10 73.4 20.4 156 515-683 23-181 (198)
112 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.4E-12 58.3 4.0 33 639-671 1-33 (34)
113 KOG1128 Uncharacterized conser 98.5 2.9E-05 6.3E-10 81.0 22.7 221 435-673 395-615 (777)
114 KOG1070 rRNA processing protei 98.5 8.8E-05 1.9E-09 82.8 26.9 225 86-331 1440-1666(1710)
115 KOG1914 mRNA cleavage and poly 98.5 0.0023 5E-08 64.8 42.5 176 454-630 347-530 (656)
116 KOG1070 rRNA processing protei 98.5 0.00012 2.6E-09 81.9 27.4 186 302-490 1500-1688(1710)
117 KOG1128 Uncharacterized conser 98.5 4.8E-05 1E-09 79.4 22.8 239 260-518 394-633 (777)
118 PRK10370 formate-dependent nit 98.4 2.3E-05 5.1E-10 72.4 18.4 128 623-778 52-181 (198)
119 KOG2053 Mitochondrial inherita 98.4 0.0058 1.3E-07 66.0 50.8 225 203-434 18-257 (932)
120 PRK15359 type III secretion sy 98.4 1.7E-05 3.7E-10 69.2 15.6 116 561-684 14-129 (144)
121 TIGR03302 OM_YfiO outer membra 98.4 8E-05 1.7E-09 72.1 21.5 99 297-397 31-144 (235)
122 KOG3081 Vesicle coat complex C 98.4 0.00036 7.9E-09 64.0 23.4 217 166-397 15-236 (299)
123 PRK14720 transcript cleavage f 98.4 0.00013 2.8E-09 81.1 24.6 241 364-656 25-268 (906)
124 KOG1914 mRNA cleavage and poly 98.4 0.0045 9.8E-08 62.8 42.4 422 226-674 17-501 (656)
125 TIGR03302 OM_YfiO outer membra 98.3 9.6E-05 2.1E-09 71.5 21.2 186 262-466 31-231 (235)
126 COG5010 TadD Flp pilus assembl 98.3 0.00017 3.7E-09 66.2 20.8 157 372-532 70-226 (257)
127 COG5010 TadD Flp pilus assembl 98.3 0.00017 3.7E-09 66.2 20.6 153 272-427 74-226 (257)
128 KOG3081 Vesicle coat complex C 98.3 0.00059 1.3E-08 62.7 23.6 146 372-528 112-261 (299)
129 PRK14720 transcript cleavage f 98.3 0.00027 5.8E-09 78.6 25.7 238 192-484 29-268 (906)
130 PRK15179 Vi polysaccharide bio 98.3 0.00038 8.2E-09 76.8 26.4 147 331-480 83-229 (694)
131 COG4783 Putative Zn-dependent 98.3 0.00024 5.2E-09 71.2 21.8 83 609-693 339-421 (484)
132 PRK15359 type III secretion sy 98.3 4.2E-05 9E-10 66.7 14.8 108 543-653 27-134 (144)
133 COG4783 Putative Zn-dependent 98.2 0.0016 3.5E-08 65.4 26.9 200 245-467 253-454 (484)
134 KOG2041 WD40 repeat protein [G 98.2 0.0045 9.7E-08 64.6 30.6 215 244-499 678-904 (1189)
135 PRK15179 Vi polysaccharide bio 98.2 0.00055 1.2E-08 75.5 26.2 235 228-485 27-267 (694)
136 TIGR02552 LcrH_SycD type III s 98.2 5.3E-05 1.2E-09 65.8 14.6 122 562-688 5-126 (135)
137 KOG3060 Uncharacterized conser 98.1 0.0026 5.5E-08 58.2 22.9 150 173-326 26-181 (289)
138 KOG3060 Uncharacterized conser 98.1 0.0027 5.9E-08 58.0 22.3 187 85-293 26-220 (289)
139 TIGR00756 PPR pentatricopeptid 98.1 7E-06 1.5E-10 51.4 4.5 35 741-775 1-35 (35)
140 TIGR02552 LcrH_SycD type III s 98.0 0.00039 8.6E-09 60.3 15.0 59 406-465 54-112 (135)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00027 5.9E-09 71.7 15.7 124 544-673 173-296 (395)
142 TIGR00756 PPR pentatricopeptid 97.9 1.6E-05 3.4E-10 49.8 4.4 33 647-679 2-34 (35)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00082 1.8E-08 58.9 15.7 52 409-462 91-142 (145)
144 PF13812 PPR_3: Pentatricopept 97.9 2.8E-05 6E-10 48.2 4.4 33 741-773 2-34 (34)
145 PF09976 TPR_21: Tetratricopep 97.8 0.0013 2.7E-08 57.7 16.0 114 312-428 24-143 (145)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00059 1.3E-08 69.3 15.5 123 513-638 174-296 (395)
147 PF13812 PPR_3: Pentatricopept 97.8 3.2E-05 7E-10 47.9 4.0 33 646-678 2-34 (34)
148 PF07079 DUF1347: Protein of u 97.7 0.066 1.4E-06 53.6 40.1 454 275-782 17-532 (549)
149 PLN03088 SGT1, suppressor of 97.7 0.001 2.2E-08 68.1 15.0 88 549-638 11-98 (356)
150 KOG0550 Molecular chaperone (D 97.7 0.019 4.1E-07 56.5 22.0 267 85-398 63-351 (486)
151 PF01535 PPR: PPR repeat; Int 97.7 6.7E-05 1.5E-09 45.2 3.7 31 741-771 1-31 (31)
152 KOG0550 Molecular chaperone (D 97.6 0.044 9.6E-07 54.1 24.0 92 547-639 256-350 (486)
153 KOG0553 TPR repeat-containing 97.6 0.00074 1.6E-08 63.5 11.7 104 584-691 90-193 (304)
154 PF14938 SNAP: Soluble NSF att 97.6 0.0094 2E-07 59.1 20.1 146 515-672 101-264 (282)
155 PF08579 RPM2: Mitochondrial r 97.6 0.00091 2E-08 52.8 9.8 81 161-241 27-116 (120)
156 cd00189 TPR Tetratricopeptide 97.6 0.0014 3E-08 52.5 11.8 94 578-673 3-96 (100)
157 PF10037 MRP-S27: Mitochondria 97.6 0.00066 1.4E-08 69.2 11.2 122 156-277 63-186 (429)
158 KOG2041 WD40 repeat protein [G 97.5 0.092 2E-06 55.3 26.2 137 165-324 766-903 (1189)
159 PF10037 MRP-S27: Mitochondria 97.5 0.0014 3E-08 67.0 13.4 75 407-481 107-181 (429)
160 PF01535 PPR: PPR repeat; Int 97.5 9.6E-05 2.1E-09 44.5 3.2 30 647-676 2-31 (31)
161 PRK10866 outer membrane biogen 97.5 0.029 6.3E-07 53.8 21.2 55 478-532 180-236 (243)
162 PF07079 DUF1347: Protein of u 97.5 0.14 3E-06 51.5 44.9 447 205-685 17-530 (549)
163 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0044 9.5E-08 52.2 14.0 98 577-674 4-105 (119)
164 PRK15363 pathogenicity island 97.4 0.0031 6.7E-08 54.1 12.1 94 578-673 38-131 (157)
165 PF12895 Apc3: Anaphase-promot 97.4 0.00024 5.2E-09 55.3 5.1 81 588-670 2-83 (84)
166 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0055 1.2E-07 51.6 13.7 16 310-325 13-28 (119)
167 PF14938 SNAP: Soluble NSF att 97.4 0.04 8.6E-07 54.6 21.3 20 412-431 205-224 (282)
168 KOG1130 Predicted G-alpha GTPa 97.4 0.0038 8.2E-08 61.0 13.0 282 376-673 25-343 (639)
169 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.6E-08 49.6 10.4 88 648-752 28-116 (120)
170 COG3898 Uncharacterized membra 97.4 0.18 3.9E-06 49.6 30.7 127 197-328 85-217 (531)
171 PRK15363 pathogenicity island 97.4 0.0062 1.3E-07 52.3 12.9 91 340-431 41-131 (157)
172 cd00189 TPR Tetratricopeptide 97.4 0.0035 7.5E-08 50.1 11.5 17 446-462 76-92 (100)
173 KOG0553 TPR repeat-containing 97.3 0.0031 6.6E-08 59.5 11.5 89 550-640 91-179 (304)
174 PF05843 Suf: Suppressor of fo 97.3 0.0051 1.1E-07 60.6 13.8 128 231-362 3-135 (280)
175 PRK10866 outer membrane biogen 97.3 0.067 1.5E-06 51.3 21.0 176 305-500 38-239 (243)
176 PF12895 Apc3: Anaphase-promot 97.3 0.00051 1.1E-08 53.5 5.4 20 340-359 31-50 (84)
177 COG4235 Cytochrome c biogenesi 97.3 0.017 3.6E-07 55.1 15.9 127 557-688 139-268 (287)
178 PLN03088 SGT1, suppressor of 97.3 0.008 1.7E-07 61.6 15.3 90 515-605 9-100 (356)
179 PRK02603 photosystem I assembl 97.2 0.018 3.8E-07 52.3 15.8 49 405-454 74-122 (172)
180 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.3E-08 49.1 6.5 64 621-687 2-65 (68)
181 PRK02603 photosystem I assembl 97.2 0.022 4.8E-07 51.6 16.2 83 301-383 37-121 (172)
182 KOG1538 Uncharacterized conser 97.2 0.07 1.5E-06 55.6 20.7 93 262-359 554-657 (1081)
183 KOG1130 Predicted G-alpha GTPa 97.2 0.0042 9E-08 60.7 11.5 82 203-285 26-116 (639)
184 CHL00033 ycf3 photosystem I as 97.2 0.0077 1.7E-07 54.4 12.9 64 300-363 36-101 (168)
185 COG4235 Cytochrome c biogenesi 97.2 0.013 2.8E-07 55.8 14.4 122 633-782 145-267 (287)
186 COG4700 Uncharacterized protei 97.2 0.12 2.6E-06 45.2 18.6 126 192-319 87-213 (251)
187 KOG2796 Uncharacterized conser 97.2 0.063 1.4E-06 49.6 17.8 142 615-779 182-323 (366)
188 CHL00033 ycf3 photosystem I as 97.2 0.027 5.8E-07 50.9 16.0 94 438-532 35-137 (168)
189 PF13432 TPR_16: Tetratricopep 97.2 0.0021 4.6E-08 47.0 7.2 61 616-679 3-63 (65)
190 COG3898 Uncharacterized membra 97.1 0.32 6.9E-06 47.9 28.8 311 419-774 69-397 (531)
191 KOG1538 Uncharacterized conser 97.1 0.071 1.5E-06 55.6 19.6 22 653-674 825-846 (1081)
192 PF13525 YfiO: Outer membrane 97.1 0.055 1.2E-06 50.5 17.9 56 342-397 13-71 (203)
193 PF13414 TPR_11: TPR repeat; P 97.1 0.0019 4.2E-08 47.9 6.6 64 609-673 2-66 (69)
194 PF05843 Suf: Suppressor of fo 97.1 0.008 1.7E-07 59.3 12.8 82 244-327 51-135 (280)
195 COG4700 Uncharacterized protei 97.0 0.21 4.5E-06 43.7 18.5 133 226-360 86-219 (251)
196 PF12688 TPR_5: Tetratrico pep 97.0 0.049 1.1E-06 45.1 14.3 55 308-362 10-66 (120)
197 PF04840 Vps16_C: Vps16, C-ter 97.0 0.48 1E-05 47.4 28.6 51 197-259 3-53 (319)
198 PF12688 TPR_5: Tetratrico pep 97.0 0.044 9.5E-07 45.4 13.8 92 581-672 7-102 (120)
199 PRK10153 DNA-binding transcrip 96.9 0.076 1.6E-06 57.1 19.1 136 330-467 333-482 (517)
200 KOG2796 Uncharacterized conser 96.9 0.35 7.6E-06 44.9 22.9 144 543-689 180-328 (366)
201 PF13525 YfiO: Outer membrane 96.9 0.15 3.2E-06 47.6 18.9 47 340-386 147-196 (203)
202 PF06239 ECSIT: Evolutionarily 96.9 0.024 5.2E-07 51.2 12.4 85 608-692 45-150 (228)
203 PF06239 ECSIT: Evolutionarily 96.9 0.023 4.9E-07 51.4 12.3 127 214-361 34-166 (228)
204 PRK10153 DNA-binding transcrip 96.9 0.069 1.5E-06 57.4 18.1 140 225-368 333-487 (517)
205 KOG2114 Vacuolar assembly/sort 96.8 1.2 2.5E-05 48.8 26.0 148 161-326 370-517 (933)
206 PF10345 Cohesin_load: Cohesin 96.7 1.5 3.2E-05 49.1 39.9 197 585-799 371-601 (608)
207 PF13371 TPR_9: Tetratricopept 96.7 0.012 2.7E-07 44.1 8.0 63 618-683 3-65 (73)
208 COG5107 RNA14 Pre-mRNA 3'-end 96.6 1 2.2E-05 45.4 36.0 141 610-779 397-539 (660)
209 PF14559 TPR_19: Tetratricopep 96.6 0.0088 1.9E-07 44.2 6.4 50 416-466 4-53 (68)
210 PF13414 TPR_11: TPR repeat; P 96.5 0.012 2.6E-07 43.6 7.1 59 336-394 5-64 (69)
211 PF13432 TPR_16: Tetratricopep 96.5 0.014 3E-07 42.6 7.0 50 344-393 7-56 (65)
212 COG4105 ComL DNA uptake lipopr 96.4 0.92 2E-05 42.6 20.1 52 480-532 174-228 (254)
213 PF13281 DUF4071: Domain of un 96.3 1.2 2.6E-05 45.0 21.4 183 575-776 141-339 (374)
214 PRK15331 chaperone protein Sic 96.3 0.24 5.3E-06 43.0 14.2 92 580-673 42-133 (165)
215 PRK10803 tol-pal system protei 96.3 0.1 2.2E-06 50.5 13.6 93 586-680 154-250 (263)
216 PRK10803 tol-pal system protei 96.2 0.072 1.6E-06 51.5 12.3 51 310-362 154-208 (263)
217 PF13424 TPR_12: Tetratricopep 96.1 0.019 4.1E-07 43.8 6.4 63 611-673 6-74 (78)
218 KOG2114 Vacuolar assembly/sort 96.0 3.3 7.1E-05 45.6 24.9 139 274-429 378-516 (933)
219 PF09205 DUF1955: Domain of un 96.0 0.55 1.2E-05 38.6 13.6 64 612-676 88-151 (161)
220 PRK15331 chaperone protein Sic 95.9 0.31 6.7E-06 42.3 13.2 90 652-768 44-133 (165)
221 KOG2280 Vacuolar assembly/sort 95.9 3.3 7.2E-05 44.9 29.9 81 477-564 688-768 (829)
222 PF13281 DUF4071: Domain of un 95.9 2 4.2E-05 43.6 20.4 31 472-502 304-334 (374)
223 PF03704 BTAD: Bacterial trans 95.8 0.42 9.1E-06 41.9 14.4 69 406-475 65-138 (146)
224 KOG1585 Protein required for f 95.8 1.6 3.5E-05 40.4 17.7 84 439-532 32-115 (308)
225 PF03704 BTAD: Bacterial trans 95.7 0.071 1.5E-06 46.8 9.0 71 612-683 64-139 (146)
226 PF13371 TPR_9: Tetratricopept 95.5 0.1 2.2E-06 39.1 8.1 56 584-640 4-59 (73)
227 PF04053 Coatomer_WDAD: Coatom 95.5 0.4 8.6E-06 50.4 14.9 99 413-532 328-426 (443)
228 KOG1585 Protein required for f 95.4 2.1 4.5E-05 39.6 16.8 207 106-357 31-250 (308)
229 COG4105 ComL DNA uptake lipopr 95.3 2.7 5.8E-05 39.6 21.5 178 309-502 44-233 (254)
230 PF04840 Vps16_C: Vps16, C-ter 95.3 3.7 8E-05 41.2 32.0 78 480-564 184-261 (319)
231 COG3118 Thioredoxin domain-con 95.2 2.8 6.2E-05 40.2 17.8 139 240-382 145-286 (304)
232 KOG0543 FKBP-type peptidyl-pro 95.2 0.35 7.5E-06 48.3 12.3 98 610-723 257-354 (397)
233 PF10345 Cohesin_load: Cohesin 95.1 7.5 0.00016 43.6 41.5 192 86-291 36-252 (608)
234 PF10300 DUF3808: Protein of u 95.0 6 0.00013 42.4 24.0 160 441-603 191-375 (468)
235 PF13424 TPR_12: Tetratricopep 95.0 0.08 1.7E-06 40.3 6.2 69 106-186 5-73 (78)
236 PF12921 ATP13: Mitochondrial 95.0 0.4 8.7E-06 40.2 10.7 79 403-481 2-96 (126)
237 PF04184 ST7: ST7 protein; In 95.0 2.9 6.2E-05 43.3 18.1 57 615-671 264-321 (539)
238 COG3118 Thioredoxin domain-con 94.9 3.4 7.4E-05 39.7 17.4 142 343-487 143-286 (304)
239 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.19 4.1E-06 51.3 9.5 97 574-676 74-176 (453)
240 KOG0543 FKBP-type peptidyl-pro 94.8 0.7 1.5E-05 46.2 13.1 96 577-674 259-355 (397)
241 KOG1920 IkappaB kinase complex 94.7 11 0.00023 43.7 26.5 31 226-257 788-820 (1265)
242 PF13512 TPR_18: Tetratricopep 94.7 0.81 1.8E-05 38.8 11.5 95 583-679 18-131 (142)
243 COG1729 Uncharacterized protei 94.6 0.57 1.2E-05 44.4 11.6 85 311-395 153-242 (262)
244 PF09205 DUF1955: Domain of un 94.5 2.3 5E-05 35.2 15.0 58 410-468 93-150 (161)
245 PF10300 DUF3808: Protein of u 94.4 8.6 0.00019 41.2 25.3 164 160-326 189-374 (468)
246 PF13176 TPR_7: Tetratricopept 94.4 0.081 1.8E-06 32.8 3.9 26 742-767 1-26 (36)
247 COG1729 Uncharacterized protei 94.3 0.6 1.3E-05 44.2 11.0 101 267-368 145-249 (262)
248 PF12921 ATP13: Mitochondrial 94.3 0.79 1.7E-05 38.5 10.7 49 226-274 49-98 (126)
249 smart00299 CLH Clathrin heavy 94.3 3.1 6.7E-05 36.0 15.1 125 163-310 11-136 (140)
250 PF04053 Coatomer_WDAD: Coatom 94.2 0.9 1.9E-05 47.8 13.4 103 204-325 271-373 (443)
251 KOG3941 Intermediate in Toll s 94.1 0.41 8.9E-06 44.9 9.2 103 193-314 66-173 (406)
252 PF13170 DUF4003: Protein of u 94.1 6.8 0.00015 38.8 18.5 151 592-766 79-243 (297)
253 KOG4555 TPR repeat-containing 94.0 1.4 3.1E-05 36.1 11.0 91 274-365 53-146 (175)
254 COG0457 NrfG FOG: TPR repeat [ 94.0 5.8 0.00013 37.8 29.7 54 413-466 177-230 (291)
255 PF13170 DUF4003: Protein of u 93.9 7.2 0.00016 38.6 20.1 83 284-368 82-177 (297)
256 PF13428 TPR_14: Tetratricopep 93.9 0.21 4.5E-06 32.8 5.3 39 741-781 2-41 (44)
257 KOG1920 IkappaB kinase complex 93.9 16 0.00034 42.4 23.5 103 520-637 951-1053(1265)
258 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 1.4 3.1E-05 45.3 13.4 65 227-293 73-141 (453)
259 PF04184 ST7: ST7 protein; In 93.8 6.4 0.00014 40.9 17.7 61 302-362 262-323 (539)
260 PRK11906 transcriptional regul 93.7 3.7 8E-05 42.4 16.1 88 590-681 319-406 (458)
261 KOG4555 TPR repeat-containing 93.7 2.3 5.1E-05 35.0 11.7 92 307-399 51-146 (175)
262 smart00299 CLH Clathrin heavy 93.7 4.2 9.2E-05 35.1 15.2 42 269-311 12-53 (140)
263 KOG2280 Vacuolar assembly/sort 93.7 13 0.00028 40.7 36.9 103 409-530 690-792 (829)
264 KOG1258 mRNA processing protei 93.6 12 0.00026 39.9 33.8 374 107-521 80-488 (577)
265 KOG1258 mRNA processing protei 93.5 12 0.00026 39.9 38.4 181 507-692 296-487 (577)
266 COG4649 Uncharacterized protei 93.5 4.7 0.0001 35.2 14.7 130 551-680 69-202 (221)
267 COG4649 Uncharacterized protei 93.4 5 0.00011 35.1 14.1 52 415-466 144-195 (221)
268 PF13428 TPR_14: Tetratricopep 93.2 0.33 7.3E-06 31.7 5.4 26 648-673 4-29 (44)
269 KOG1550 Extracellular protein 93.0 17 0.00037 40.1 25.3 205 539-770 287-505 (552)
270 KOG1941 Acetylcholine receptor 92.7 5 0.00011 39.5 14.4 155 413-567 16-189 (518)
271 PF13512 TPR_18: Tetratricopep 92.7 4 8.7E-05 34.8 12.2 70 345-414 21-93 (142)
272 PRK11906 transcriptional regul 92.6 9.4 0.0002 39.6 17.0 159 268-428 257-432 (458)
273 PF07035 Mic1: Colon cancer-as 92.6 6.9 0.00015 34.6 15.3 135 215-363 15-149 (167)
274 KOG3941 Intermediate in Toll s 92.5 0.96 2.1E-05 42.6 9.0 117 226-361 64-186 (406)
275 KOG2610 Uncharacterized conser 92.4 4.8 0.0001 39.2 13.7 149 416-567 116-274 (491)
276 COG0457 NrfG FOG: TPR repeat [ 92.4 10 0.00022 36.0 29.9 223 243-467 37-265 (291)
277 PF08631 SPO22: Meiosis protei 92.1 13 0.00029 36.6 26.9 15 518-532 256-270 (278)
278 PF08631 SPO22: Meiosis protei 92.1 13 0.00029 36.6 26.3 129 117-258 4-150 (278)
279 KOG2610 Uncharacterized conser 92.0 4.6 9.9E-05 39.3 13.1 114 242-357 116-232 (491)
280 COG2976 Uncharacterized protei 92.0 6.3 0.00014 35.4 13.0 94 164-259 94-189 (207)
281 PF13431 TPR_17: Tetratricopep 91.9 0.15 3.3E-06 31.1 2.2 23 739-761 12-34 (34)
282 PF13176 TPR_7: Tetratricopept 91.8 0.39 8.4E-06 29.7 4.1 26 647-672 1-26 (36)
283 COG2909 MalT ATP-dependent tra 91.8 26 0.00056 39.4 26.9 190 586-799 469-683 (894)
284 PF00515 TPR_1: Tetratricopept 91.7 0.21 4.5E-06 30.4 2.8 32 741-774 2-33 (34)
285 KOG1941 Acetylcholine receptor 91.7 15 0.00032 36.4 20.2 228 85-326 20-273 (518)
286 PF10602 RPN7: 26S proteasome 91.3 3.5 7.6E-05 37.2 11.4 59 336-394 38-99 (177)
287 PF13431 TPR_17: Tetratricopep 91.3 0.26 5.7E-06 30.0 2.8 32 633-665 2-33 (34)
288 COG4785 NlpI Lipoprotein NlpI, 91.3 12 0.00025 34.3 14.1 187 554-769 79-266 (297)
289 PF07719 TPR_2: Tetratricopept 90.9 0.26 5.6E-06 29.9 2.7 32 741-774 2-33 (34)
290 COG5107 RNA14 Pre-mRNA 3'-end 90.8 21 0.00046 36.6 37.5 145 543-692 400-547 (660)
291 COG3629 DnrI DNA-binding trans 90.3 3.4 7.5E-05 39.9 10.7 78 611-689 154-236 (280)
292 COG3629 DnrI DNA-binding trans 90.3 2.8 6E-05 40.6 10.1 58 543-601 156-213 (280)
293 PF00515 TPR_1: Tetratricopept 90.1 0.81 1.8E-05 27.7 4.4 28 646-673 2-29 (34)
294 COG4785 NlpI Lipoprotein NlpI, 89.8 16 0.00034 33.5 16.4 179 173-363 79-266 (297)
295 KOG1464 COP9 signalosome, subu 89.7 19 0.0004 34.1 17.8 135 402-536 104-259 (440)
296 KOG2066 Vacuolar assembly/sort 89.3 40 0.00086 37.4 28.1 102 166-276 363-467 (846)
297 PF07719 TPR_2: Tetratricopept 88.6 1.1 2.3E-05 27.0 4.2 28 646-673 2-29 (34)
298 PF13374 TPR_10: Tetratricopep 88.5 0.84 1.8E-05 29.2 3.9 28 741-768 3-30 (42)
299 PF10602 RPN7: 26S proteasome 88.3 14 0.00029 33.5 12.6 62 369-430 37-100 (177)
300 KOG2066 Vacuolar assembly/sort 88.1 47 0.001 36.8 28.9 102 201-311 363-467 (846)
301 PF04097 Nic96: Nup93/Nic96; 87.6 53 0.0012 36.8 24.0 89 373-466 263-355 (613)
302 PF07035 Mic1: Colon cancer-as 87.5 20 0.00043 31.8 16.2 30 425-454 16-45 (167)
303 PF09613 HrpB1_HrpK: Bacterial 87.4 19 0.00041 31.5 12.7 52 414-467 21-73 (160)
304 KOG0276 Vesicle coat complex C 86.9 8 0.00017 41.0 11.3 47 309-361 647-693 (794)
305 COG2976 Uncharacterized protei 86.9 23 0.00051 31.9 14.1 54 412-467 135-188 (207)
306 PF09613 HrpB1_HrpK: Bacterial 86.8 21 0.00045 31.3 13.4 16 241-256 56-71 (160)
307 COG2909 MalT ATP-dependent tra 86.3 65 0.0014 36.5 27.1 162 159-328 347-526 (894)
308 KOG1464 COP9 signalosome, subu 85.7 33 0.00071 32.5 17.7 79 612-691 147-237 (440)
309 KOG1550 Extracellular protein 85.7 62 0.0013 35.8 26.7 181 210-399 228-428 (552)
310 KOG4570 Uncharacterized conser 85.3 19 0.00041 35.0 11.9 102 400-503 61-165 (418)
311 KOG0276 Vesicle coat complex C 85.1 38 0.00083 36.3 15.0 131 369-532 615-745 (794)
312 PF13181 TPR_8: Tetratricopept 85.0 2 4.4E-05 25.8 4.0 28 741-768 2-29 (34)
313 PF06552 TOM20_plant: Plant sp 84.8 22 0.00048 31.7 11.4 63 627-692 52-125 (186)
314 PF02284 COX5A: Cytochrome c o 84.2 19 0.00041 28.5 9.4 46 177-222 28-73 (108)
315 PF13374 TPR_10: Tetratricopep 84.0 2.6 5.7E-05 26.8 4.5 29 645-673 2-30 (42)
316 KOG4570 Uncharacterized conser 83.8 16 0.00035 35.4 10.9 104 259-364 59-165 (418)
317 KOG4234 TPR repeat-containing 83.5 15 0.00032 33.2 9.7 88 310-398 106-198 (271)
318 KOG2063 Vacuolar assembly/sort 83.4 53 0.0011 37.7 16.4 41 271-311 598-638 (877)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 9.3 0.0002 29.8 7.4 59 628-687 25-83 (103)
320 KOG1586 Protein required for f 83.3 39 0.00085 31.5 21.2 24 345-368 165-188 (288)
321 COG3947 Response regulator con 83.1 46 0.001 32.2 16.7 70 612-682 281-355 (361)
322 PF02284 COX5A: Cytochrome c o 82.7 16 0.00035 28.9 8.5 45 248-292 29-73 (108)
323 KOG2471 TPR repeat-containing 82.7 31 0.00066 35.9 12.9 123 620-786 250-380 (696)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 82.0 9.2 0.0002 29.8 6.9 45 247-291 25-69 (103)
325 PF13181 TPR_8: Tetratricopept 81.8 2.5 5.5E-05 25.4 3.5 27 647-673 3-29 (34)
326 PF13929 mRNA_stabil: mRNA sta 81.6 54 0.0012 31.9 16.2 137 174-310 143-289 (292)
327 PF11207 DUF2989: Protein of u 81.5 16 0.00034 33.3 9.5 72 593-665 124-198 (203)
328 TIGR03504 FimV_Cterm FimV C-te 80.7 3.6 7.8E-05 26.8 3.9 28 745-772 4-31 (44)
329 COG4455 ImpE Protein of avirul 80.1 14 0.0003 33.9 8.5 58 545-603 6-63 (273)
330 PF13174 TPR_6: Tetratricopept 80.0 3.6 7.9E-05 24.4 3.7 26 649-674 4-29 (33)
331 PF04097 Nic96: Nup93/Nic96; 79.8 1.1E+02 0.0024 34.3 24.5 29 300-328 325-356 (613)
332 PF07721 TPR_4: Tetratricopept 79.8 2.7 5.8E-05 23.6 2.8 23 742-764 3-25 (26)
333 PF13174 TPR_6: Tetratricopept 79.5 2.7 5.9E-05 24.9 3.0 27 743-769 3-29 (33)
334 PF11207 DUF2989: Protein of u 79.3 27 0.00059 31.9 10.2 72 281-353 123-197 (203)
335 PF07163 Pex26: Pex26 protein; 79.0 57 0.0012 31.4 12.5 92 161-252 85-181 (309)
336 smart00028 TPR Tetratricopepti 78.4 3.9 8.4E-05 23.6 3.6 28 741-768 2-29 (34)
337 TIGR02508 type_III_yscG type I 77.3 30 0.00065 27.3 8.3 61 617-684 46-106 (115)
338 KOG4234 TPR repeat-containing 77.2 32 0.0007 31.1 9.8 93 116-223 105-197 (271)
339 KOG4507 Uncharacterized conser 76.6 21 0.00046 37.9 9.8 103 552-656 619-721 (886)
340 KOG4648 Uncharacterized conser 76.6 15 0.00033 36.0 8.3 94 584-681 106-199 (536)
341 PRK11619 lytic murein transgly 76.4 1.4E+02 0.003 33.7 38.3 116 382-500 255-373 (644)
342 KOG2396 HAT (Half-A-TPR) repea 76.2 1.1E+02 0.0024 32.3 42.8 99 572-673 456-558 (568)
343 PF07163 Pex26: Pex26 protein; 75.0 32 0.0007 33.0 9.8 54 269-322 123-181 (309)
344 COG3947 Response regulator con 74.4 88 0.0019 30.4 15.5 43 88-133 150-193 (361)
345 PF02259 FAT: FAT domain; Int 73.8 1.1E+02 0.0024 31.3 24.7 54 235-292 4-57 (352)
346 PRK09687 putative lyase; Provi 73.2 1E+02 0.0022 30.5 27.7 85 421-517 192-276 (280)
347 COG4455 ImpE Protein of avirul 72.5 29 0.00063 32.0 8.4 53 307-360 9-61 (273)
348 PF13929 mRNA_stabil: mRNA sta 72.2 1E+02 0.0022 30.1 17.3 60 436-495 200-260 (292)
349 KOG4077 Cytochrome c oxidase, 71.5 47 0.001 27.5 8.6 75 113-187 36-112 (149)
350 KOG4648 Uncharacterized conser 70.7 25 0.00054 34.6 8.2 91 165-257 103-193 (536)
351 PF06552 TOM20_plant: Plant sp 70.2 49 0.0011 29.6 9.2 27 626-654 96-122 (186)
352 TIGR03504 FimV_Cterm FimV C-te 70.1 11 0.00024 24.6 4.0 23 651-673 5-27 (44)
353 PF00637 Clathrin: Region in C 69.9 2.1 4.7E-05 37.1 1.1 49 238-286 16-64 (143)
354 KOG2063 Vacuolar assembly/sort 69.5 2.2E+02 0.0049 33.0 26.7 61 162-222 310-374 (877)
355 KOG0991 Replication factor C, 69.1 1E+02 0.0022 28.9 13.0 77 708-786 205-283 (333)
356 PRK09687 putative lyase; Provi 69.1 1.2E+02 0.0027 29.9 28.0 22 444-466 241-262 (280)
357 COG1747 Uncharacterized N-term 69.1 1.6E+02 0.0035 31.2 25.7 176 263-446 65-247 (711)
358 COG1747 Uncharacterized N-term 68.6 1.7E+02 0.0036 31.1 25.3 63 158-223 65-127 (711)
359 KOG0890 Protein kinase of the 68.5 3.6E+02 0.0078 35.0 37.8 152 164-323 1388-1542(2382)
360 PF10579 Rapsyn_N: Rapsyn N-te 66.6 21 0.00046 26.7 5.3 45 346-390 18-65 (80)
361 KOG2062 26S proteasome regulat 66.3 2.2E+02 0.0048 31.8 38.7 121 516-638 509-634 (929)
362 PF09477 Type_III_YscG: Bacter 65.9 69 0.0015 25.7 8.3 86 590-683 21-106 (116)
363 PF00637 Clathrin: Region in C 65.9 2.4 5.1E-05 36.9 0.5 82 270-358 13-94 (143)
364 KOG0403 Neoplastic transformat 64.7 1.8E+02 0.0039 30.2 29.8 76 578-658 512-587 (645)
365 PF14853 Fis1_TPR_C: Fis1 C-te 64.4 14 0.0003 25.3 3.9 37 744-782 5-41 (53)
366 PF14853 Fis1_TPR_C: Fis1 C-te 64.4 34 0.00075 23.4 5.7 38 650-689 6-43 (53)
367 PRK11619 lytic murein transgly 64.0 2.6E+02 0.0055 31.7 37.9 451 202-680 41-511 (644)
368 KOG2471 TPR repeat-containing 63.8 2E+02 0.0043 30.3 14.2 57 741-799 620-679 (696)
369 PF07575 Nucleopor_Nup85: Nup8 63.4 2.5E+02 0.0054 31.3 20.2 26 159-185 149-174 (566)
370 PHA02875 ankyrin repeat protei 62.7 2.1E+02 0.0045 30.2 15.2 11 273-283 74-84 (413)
371 PF10579 Rapsyn_N: Rapsyn N-te 62.4 28 0.00061 26.1 5.3 47 622-668 18-66 (80)
372 PHA02875 ankyrin repeat protei 61.8 2.2E+02 0.0047 30.1 15.2 18 306-323 72-89 (413)
373 PF11663 Toxin_YhaV: Toxin wit 61.0 8.4 0.00018 32.2 2.7 33 656-690 106-138 (140)
374 COG0790 FOG: TPR repeat, SEL1 59.7 1.9E+02 0.0041 28.7 23.2 86 592-684 172-276 (292)
375 PF10366 Vps39_1: Vacuolar sor 58.5 13 0.00028 30.2 3.5 30 739-768 38-67 (108)
376 KOG4077 Cytochrome c oxidase, 58.4 71 0.0015 26.5 7.3 46 629-674 68-113 (149)
377 PF04910 Tcf25: Transcriptiona 58.3 2.3E+02 0.005 29.3 21.9 74 306-379 110-190 (360)
378 KOG4507 Uncharacterized conser 56.3 62 0.0013 34.6 8.5 168 245-414 551-721 (886)
379 KOG1586 Protein required for f 55.9 1.8E+02 0.004 27.4 20.0 17 552-568 166-182 (288)
380 PF02259 FAT: FAT domain; Int 54.0 2.6E+02 0.0056 28.6 25.0 61 543-603 149-212 (352)
381 PF10366 Vps39_1: Vacuolar sor 52.4 81 0.0017 25.7 7.1 27 542-568 41-67 (108)
382 PF09986 DUF2225: Uncharacteri 52.1 2.1E+02 0.0045 26.9 11.2 64 612-675 120-195 (214)
383 PF14689 SPOB_a: Sensor_kinase 51.5 61 0.0013 23.1 5.5 30 739-768 22-51 (62)
384 PRK10941 hypothetical protein; 51.2 2E+02 0.0044 28.1 10.9 78 613-691 184-262 (269)
385 KOG0376 Serine-threonine phosp 50.8 37 0.00079 35.4 5.9 103 585-692 14-117 (476)
386 KOG0687 26S proteasome regulat 49.1 2.8E+02 0.0062 27.6 16.0 23 407-429 108-130 (393)
387 PF10255 Paf67: RNA polymerase 48.8 80 0.0017 32.8 8.0 25 647-671 124-148 (404)
388 PF09986 DUF2225: Uncharacteri 48.6 2.4E+02 0.0051 26.5 11.0 109 655-774 87-199 (214)
389 PF14689 SPOB_a: Sensor_kinase 46.8 48 0.001 23.6 4.4 29 228-256 22-50 (62)
390 KOG0890 Protein kinase of the 46.3 8.2E+02 0.018 32.1 34.2 315 269-605 1388-1732(2382)
391 PF12862 Apc5: Anaphase-promot 46.1 1.3E+02 0.0027 23.7 7.3 53 621-673 9-69 (94)
392 KOG1308 Hsp70-interacting prot 46.0 14 0.00031 36.4 2.1 91 588-680 127-217 (377)
393 PF14669 Asp_Glu_race_2: Putat 46.0 2.3E+02 0.0051 25.7 14.5 23 475-497 183-205 (233)
394 TIGR02561 HrpB1_HrpK type III 45.6 2E+02 0.0044 24.9 13.9 51 312-364 23-74 (153)
395 KOG3364 Membrane protein invol 45.1 1.9E+02 0.0042 24.6 10.0 59 707-776 47-105 (149)
396 PF09670 Cas_Cas02710: CRISPR- 45.0 2.2E+02 0.0048 29.7 10.7 57 201-258 138-198 (379)
397 COG0790 FOG: TPR repeat, SEL1 44.7 3.2E+02 0.007 27.0 24.8 83 241-329 53-143 (292)
398 KOG4642 Chaperone-dependent E3 44.2 2.9E+02 0.0063 26.3 11.0 115 312-428 23-142 (284)
399 PF11848 DUF3368: Domain of un 44.0 72 0.0016 21.3 4.7 30 241-270 14-43 (48)
400 COG0735 Fur Fe2+/Zn2+ uptake r 43.9 1.1E+02 0.0025 26.5 7.2 40 361-400 13-52 (145)
401 PF09670 Cas_Cas02710: CRISPR- 43.5 3E+02 0.0064 28.7 11.4 52 414-466 142-197 (379)
402 PRK12798 chemotaxis protein; R 43.2 4.1E+02 0.0088 27.7 22.3 83 277-361 125-212 (421)
403 TIGR02508 type_III_yscG type I 43.1 1.7E+02 0.0037 23.3 9.0 84 419-510 21-104 (115)
404 TIGR02561 HrpB1_HrpK type III 43.0 2.3E+02 0.0049 24.7 12.9 19 484-502 55-73 (153)
405 PF08424 NRDE-2: NRDE-2, neces 42.5 3.8E+02 0.0082 27.1 18.6 80 591-672 47-129 (321)
406 PF11846 DUF3366: Domain of un 42.3 93 0.002 28.6 7.0 55 83-137 120-175 (193)
407 PF13762 MNE1: Mitochondrial s 41.4 2.4E+02 0.0051 24.5 10.8 91 601-692 28-127 (145)
408 PF04762 IKI3: IKI3 family; I 41.1 3.1E+02 0.0067 32.7 12.2 29 439-467 813-843 (928)
409 KOG3364 Membrane protein invol 40.8 2.3E+02 0.005 24.2 10.4 72 607-680 29-104 (149)
410 PF11768 DUF3312: Protein of u 40.1 3.8E+02 0.0083 29.0 11.3 23 304-326 413-435 (545)
411 PF04910 Tcf25: Transcriptiona 40.0 4.4E+02 0.0096 27.2 20.1 103 582-690 110-234 (360)
412 COG2178 Predicted RNA-binding 39.7 3E+02 0.0065 25.2 9.7 18 239-256 39-56 (204)
413 PF11838 ERAP1_C: ERAP1-like C 39.4 4.1E+02 0.009 26.7 19.4 82 280-364 146-231 (324)
414 PF11848 DUF3368: Domain of un 39.3 1.2E+02 0.0025 20.3 5.1 32 656-687 13-44 (48)
415 KOG2396 HAT (Half-A-TPR) repea 39.1 5.1E+02 0.011 27.7 39.9 101 642-768 456-558 (568)
416 KOG4521 Nuclear pore complex, 39.1 7.6E+02 0.016 29.7 15.4 50 160-211 1022-1071(1480)
417 PF11838 ERAP1_C: ERAP1-like C 39.0 4.2E+02 0.0091 26.7 17.3 81 245-328 146-230 (324)
418 KOG0292 Vesicle coat complex C 38.7 6.8E+02 0.015 29.0 23.4 158 234-432 625-782 (1202)
419 KOG0403 Neoplastic transformat 38.1 5E+02 0.011 27.2 28.1 25 442-466 218-242 (645)
420 PF11846 DUF3366: Domain of un 38.1 1.5E+02 0.0032 27.3 7.6 36 641-678 140-175 (193)
421 smart00386 HAT HAT (Half-A-TPR 37.5 80 0.0017 18.1 4.0 26 625-651 2-27 (33)
422 KOG2034 Vacuolar sorting prote 37.0 7.2E+02 0.016 28.8 26.9 47 477-532 508-554 (911)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 37.0 1.8E+02 0.0039 24.5 7.2 60 73-132 65-125 (126)
424 PF08424 NRDE-2: NRDE-2, neces 36.5 4.7E+02 0.01 26.5 18.4 26 479-504 160-185 (321)
425 PRK14956 DNA polymerase III su 36.2 5.6E+02 0.012 27.6 12.0 33 639-673 196-228 (484)
426 KOG0686 COP9 signalosome, subu 36.1 5.1E+02 0.011 26.8 14.6 65 159-223 150-216 (466)
427 PRK10564 maltose regulon perip 35.4 73 0.0016 31.3 5.0 44 739-782 256-299 (303)
428 PF07575 Nucleopor_Nup85: Nup8 35.4 98 0.0021 34.4 6.9 11 84-94 161-171 (566)
429 KOG4642 Chaperone-dependent E3 35.3 4E+02 0.0087 25.4 11.2 81 347-429 23-104 (284)
430 KOG0687 26S proteasome regulat 34.6 4.8E+02 0.011 26.1 15.2 25 301-325 106-130 (393)
431 KOG4279 Serine/threonine prote 34.5 7.3E+02 0.016 28.1 12.7 197 211-435 180-398 (1226)
432 PF04190 DUF410: Protein of un 33.8 4.6E+02 0.0099 25.6 18.8 25 298-322 89-113 (260)
433 PRK10564 maltose regulon perip 33.4 86 0.0019 30.8 5.2 42 192-233 254-296 (303)
434 PF07720 TPR_3: Tetratricopept 33.0 70 0.0015 19.8 3.0 22 743-764 4-25 (36)
435 TIGR02710 CRISPR-associated pr 32.4 5.9E+02 0.013 26.4 11.4 21 239-259 140-160 (380)
436 KOG0128 RNA-binding protein SA 31.9 8.4E+02 0.018 28.0 33.5 57 622-679 474-531 (881)
437 PF12862 Apc5: Anaphase-promot 31.8 2.5E+02 0.0055 22.0 7.1 9 347-355 11-19 (94)
438 PF00627 UBA: UBA/TS-N domain; 31.8 98 0.0021 19.1 3.6 35 757-798 3-37 (37)
439 PF10516 SHNi-TPR: SHNi-TPR; 30.8 1.2E+02 0.0026 19.1 3.8 28 741-768 2-29 (38)
440 cd08819 CARD_MDA5_2 Caspase ac 30.8 2.6E+02 0.0055 21.7 7.2 36 415-455 48-83 (88)
441 COG5108 RPO41 Mitochondrial DN 30.7 2.8E+02 0.006 30.6 8.6 74 580-656 33-114 (1117)
442 PRK10941 hypothetical protein; 30.5 5.3E+02 0.011 25.3 10.8 57 340-396 187-243 (269)
443 cd00280 TRFH Telomeric Repeat 30.3 3.5E+02 0.0075 24.6 7.8 67 419-488 85-158 (200)
444 KOG0292 Vesicle coat complex C 29.5 4.5E+02 0.0097 30.3 10.1 127 373-532 625-751 (1202)
445 PRK08691 DNA polymerase III su 29.5 9E+02 0.019 27.6 13.1 41 334-375 246-286 (709)
446 smart00777 Mad3_BUB1_I Mad3/BU 29.2 3.5E+02 0.0075 22.8 7.7 76 661-765 49-124 (125)
447 KOG0376 Serine-threonine phosp 28.9 93 0.002 32.6 4.8 54 619-673 13-66 (476)
448 PF04190 DUF410: Protein of un 28.5 5.6E+02 0.012 24.9 21.1 159 171-363 2-170 (260)
449 KOG1308 Hsp70-interacting prot 28.4 46 0.00099 33.1 2.5 52 275-327 125-176 (377)
450 KOG4567 GTPase-activating prot 28.3 3.5E+02 0.0075 26.8 8.0 57 423-484 263-319 (370)
451 COG5159 RPN6 26S proteasome re 27.4 6E+02 0.013 24.9 22.0 30 339-368 130-163 (421)
452 PF11663 Toxin_YhaV: Toxin wit 27.3 44 0.00095 28.1 1.8 34 749-784 104-137 (140)
453 PF00244 14-3-3: 14-3-3 protei 26.8 5.7E+02 0.012 24.5 10.6 59 163-221 5-64 (236)
454 COG0735 Fur Fe2+/Zn2+ uptake r 26.5 3.2E+02 0.0068 23.7 7.1 13 455-467 37-49 (145)
455 PF09477 Type_III_YscG: Bacter 26.5 3.5E+02 0.0077 22.0 9.5 77 350-432 22-98 (116)
456 cd08819 CARD_MDA5_2 Caspase ac 26.0 3.2E+02 0.0068 21.2 7.2 31 522-554 50-80 (88)
457 PRK11639 zinc uptake transcrip 25.5 3.5E+02 0.0075 24.2 7.5 20 383-402 40-59 (169)
458 PF04762 IKI3: IKI3 family; I 25.3 1.2E+03 0.027 27.9 15.4 132 623-798 791-924 (928)
459 PF04090 RNA_pol_I_TF: RNA pol 25.0 3.1E+02 0.0066 25.3 6.9 63 160-222 42-104 (199)
460 PRK15180 Vi polysaccharide bio 25.0 8.5E+02 0.018 25.9 28.9 87 239-327 333-419 (831)
461 PF12926 MOZART2: Mitotic-spin 25.0 3.3E+02 0.0071 21.1 7.3 42 250-291 29-70 (88)
462 PRK14951 DNA polymerase III su 25.0 1E+03 0.022 26.8 13.4 41 334-375 251-291 (618)
463 PRK14958 DNA polymerase III su 24.3 9.6E+02 0.021 26.3 13.4 33 339-372 251-283 (509)
464 KOG2034 Vacuolar sorting prote 23.8 1.2E+03 0.026 27.2 29.7 50 302-360 507-556 (911)
465 COG4259 Uncharacterized protei 23.7 3.8E+02 0.0082 21.3 7.1 60 711-782 53-112 (121)
466 PRK09857 putative transposase; 23.7 7.4E+02 0.016 24.7 10.0 66 613-679 209-274 (292)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 23.6 4.5E+02 0.0096 22.1 8.8 41 352-392 81-123 (126)
468 PF13762 MNE1: Mitochondrial s 23.4 4.9E+02 0.011 22.6 10.6 47 438-484 79-126 (145)
469 PF09454 Vps23_core: Vps23 cor 23.2 1.5E+02 0.0033 21.4 3.7 27 232-258 11-37 (65)
470 COG5187 RPN7 26S proteasome re 23.2 7.2E+02 0.016 24.4 14.7 68 299-366 115-187 (412)
471 PF00244 14-3-3: 14-3-3 protei 23.2 6.7E+02 0.014 24.0 9.6 41 373-413 6-46 (236)
472 PRK14963 DNA polymerase III su 23.1 7.3E+02 0.016 27.1 10.6 100 660-777 176-278 (504)
473 COG5108 RPO41 Mitochondrial DN 23.0 6.9E+02 0.015 27.8 9.8 77 371-450 31-115 (1117)
474 PRK13342 recombination factor 22.7 9.2E+02 0.02 25.5 19.0 170 209-396 152-333 (413)
475 PF15297 CKAP2_C: Cytoskeleton 22.4 5.7E+02 0.012 25.9 8.6 86 108-209 105-190 (353)
476 KOG4814 Uncharacterized conser 22.1 4.4E+02 0.0096 29.1 8.2 53 514-567 400-455 (872)
477 PF02847 MA3: MA3 domain; Int 21.8 3.6E+02 0.0078 21.8 6.5 99 233-332 6-113 (113)
478 KOG2062 26S proteasome regulat 21.8 1.2E+03 0.026 26.5 41.0 123 582-723 508-634 (929)
479 PRK08691 DNA polymerase III su 21.6 1E+03 0.023 27.1 11.4 36 644-680 245-280 (709)
480 PRK09857 putative transposase; 21.4 6.7E+02 0.014 25.0 9.2 64 443-507 211-274 (292)
481 KOG3807 Predicted membrane pro 21.3 8.3E+02 0.018 24.4 13.1 16 485-500 287-302 (556)
482 PF11817 Foie-gras_1: Foie gra 21.3 6.1E+02 0.013 24.4 8.8 86 88-188 162-247 (247)
483 PRK09462 fur ferric uptake reg 21.2 4.5E+02 0.0097 22.8 7.2 43 363-405 11-54 (148)
484 PF14669 Asp_Glu_race_2: Putat 21.1 6.5E+02 0.014 23.1 15.5 56 615-670 137-206 (233)
485 PF02184 HAT: HAT (Half-A-TPR) 20.9 1E+02 0.0022 18.6 2.0 25 755-781 2-26 (32)
486 KOG2422 Uncharacterized conser 20.9 1.1E+03 0.025 25.8 19.2 219 119-350 251-499 (665)
487 KOG1839 Uncharacterized protei 20.5 9.7E+02 0.021 29.2 11.2 25 193-217 972-996 (1236)
488 PRK09462 fur ferric uptake reg 20.4 2.4E+02 0.0052 24.5 5.3 49 74-122 20-68 (148)
489 cd07153 Fur_like Ferric uptake 20.3 2.4E+02 0.0053 23.0 5.2 44 201-244 7-50 (116)
490 KOG1839 Uncharacterized protei 20.3 9.1E+02 0.02 29.5 11.0 58 608-665 1055-1119(1236)
491 COG5187 RPN7 26S proteasome re 20.1 8.4E+02 0.018 24.0 14.7 99 437-537 114-221 (412)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-80 Score=709.74 Aligned_cols=631 Identities=19% Similarity=0.273 Sum_probs=597.5
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 003725 103 RHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVL 182 (800)
Q Consensus 103 ~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 182 (800)
.|+..+++.+++.|++.|++++|..++.+|.+. |..++..+|..++.+|...+.++.|..++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~------------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 109 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQEL------------------RVPVDEDAYVALFRLCEWKRAVEEGSRVC 109 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------------------CCCCChhHHHHHHHHHhhCCCHHHHHHHH
Confidence 567888999999999999999999999988765 44567778999999999999999999999
Q ss_pred HHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 003725 183 FQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTL 262 (800)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (800)
..+.+.+..++...+|.++..|++.|+++.|..+|++|.. ||..+|+.+|.+|++.|++++|.++|++|...|+.|
T Consensus 110 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred HHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999988889999999999999999999999999999974 789999999999999999999999999999999999
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 263 HGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALIS 342 (800)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 342 (800)
|..||+.++.+|+..++++.+.+++..+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+++|.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999974 78999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
+|++.|++++|+++|++|...|+.|+ .+++.++.+|++.|+.+.+.+++..+.+.|..||..+|++|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKK 501 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (800)
|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+
T Consensus 342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999974 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 003725 502 QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKL 581 (800)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (800)
.|+.|+..+++.++.+|++.|++++|.++|+ .+.+++..+|+.++.+|++.|+.++|+.+|++|.. +..||..++..+
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~-~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFH-NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHH-hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 9999999999999999999999999999999 67778888999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 582 LTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCL 661 (800)
Q Consensus 582 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 661 (800)
+.+|++.|+.+.+.+++..+.+.|+.+|..++++++++|+++|++++|..+|+.+ .||..+||+||.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 47999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHH-HCCCCchhhhccCCCCCc
Q 003725 662 REACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMK-EMEISPDVMLGQGLEPDT 740 (800)
Q Consensus 662 ~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~~~~~~ 740 (800)
++|.++|++|.+.|+.||.+||+.++.+|++ .|..++|.++|+.|. ..++.| +.
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~---------------~g~v~ea~~~f~~M~~~~gi~P----------~~ 625 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSR---------------SGMVTQGLEYFHSMEEKYSITP----------NL 625 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhh---------------cChHHHHHHHHHHHHHHhCCCC----------ch
Confidence 9999999999999999999999999999998 456899999999998 567777 99
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccCCCCHHHHHhhh
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLF 798 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 798 (800)
.+|++++++|++.|++++|.+++++| +++||..+|++|+++|...|+.+.|+...
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999999999999999 58999999999999999999999876554
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-76 Score=680.60 Aligned_cols=651 Identities=17% Similarity=0.207 Sum_probs=578.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchH-----------
Q 003725 74 SEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFE----------- 142 (800)
Q Consensus 74 ~~v~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~----------- 142 (800)
..++..+.+ .|++..|+.+|+.|.+.|+.|+..+|..+++.+.+.+....+..++..+++.....+..
T Consensus 55 n~~i~~l~~-~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 55 NSQLRALCS-HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 344444444 58999999999999999999999999999999999999999999999888775433221
Q ss_pred ------HHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHH
Q 003725 143 ------VIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVL 216 (800)
Q Consensus 143 ------~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 216 (800)
...+|+.|. .++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.+++++.+.++++.+.++
T Consensus 134 ~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 134 FGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred CCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 122333332 3466789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003725 217 YEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIP 296 (800)
Q Consensus 217 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 296 (800)
+..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999986 478889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHH
Q 003725 297 LNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVIL 375 (800)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~ 375 (800)
||..+|+.++.++++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ++ .+|+.++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 44 7899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 376 KCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLV 455 (800)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (800)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 456 DAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDL 535 (800)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (800)
+|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +++||..|+..++.+|++.|.++.+.+++..++
T Consensus 442 ~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 442 KALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 99999999864 5888999999999999999999999999986 589999999999999999999999999999666
Q ss_pred hcc---CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 536 KEK---CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTT 612 (800)
Q Consensus 536 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 612 (800)
... +...+++|+++|++.|+.++|.++|+++ .+|..+|+.++.+|+..|+.++|+++|++|.+.|+.||..|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 543 3445899999999999999999999887 46888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLT-RHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYS 691 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 691 (800)
|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.+++++|. ++||..+|++|+.+|.
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 68999999999999999999999999999999984 7999999999999997
Q ss_pred ccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 692 KINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
. .++.+.++...+.+.+ +.|+ +...|..|.+.|+..|++++|.++.+.|.+.|+
T Consensus 669 ~---------------~~~~e~~e~~a~~l~~--l~p~---------~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 669 I---------------HRHVELGELAAQHIFE--LDPN---------SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred H---------------cCChHHHHHHHHHHHh--hCCC---------CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 6 2345566666666554 4554 788899999999999999999999999999999
Q ss_pred CCCHH
Q 003725 772 EPNIV 776 (800)
Q Consensus 772 ~p~~~ 776 (800)
+++..
T Consensus 723 ~k~~g 727 (857)
T PLN03077 723 TVDPG 727 (857)
T ss_pred CCCCC
Confidence 88765
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-67 Score=590.89 Aligned_cols=543 Identities=17% Similarity=0.239 Sum_probs=483.8
Q ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHH
Q 003725 191 VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGF-SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYST 269 (800)
Q Consensus 191 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (800)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|.++++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45677888999999999999999999999998885 56788888999999999999999999998874 89999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 270 IIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349 (800)
Q Consensus 270 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (800)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 350 IIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKS--MGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (800)
+++|.++|++|...|+.|+ .+|+.++.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999986 578999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKP 506 (800)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 506 (800)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.|++|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 003725 507 NVITHNMIIEGLCTSGRVKEARAFFDDDLK---EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLT 583 (800)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 583 (800)
+..+|+.++.+|++.|++++|.++|+++.. .++...|+.||.+|++.|++++|.++|++|...|+.||..+|..++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999995544 23555699999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
+|++.|+.++|.+++++|.+.|+.||..+|+.++..|. +.+++|..+.+.+...+. .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHH
Confidence 99999999999999999999999999999999987654 246666655544443210 111122344567
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchH
Q 003725 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCY 743 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 743 (800)
|..+|++|++.|+.||..||+.++.+++. .++...+..++++|...+..| +..+|
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---------------~~~~~~~~~m~~~m~~~~~~~----------~~~~y 885 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQL---------------PHDATLRNRLIENLGISADSQ----------KQSNL 885 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcc---------------cccHHHHHHHHHHhccCCCCc----------chhhh
Confidence 99999999999999999999999955443 445667777777665544444 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 744 TVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 744 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
++|++++++. .++|+.++++|.+.|+.|+..
T Consensus 886 ~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 886 STLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999998543 478999999999999999975
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-66 Score=581.47 Aligned_cols=543 Identities=17% Similarity=0.255 Sum_probs=496.8
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 003725 104 HNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLF 183 (800)
Q Consensus 104 ~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 183 (800)
++...|..++..|++.|++++|..++++|..... ...+...+..++..|.+.|.+++|+.+|.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-----------------v~~~~v~~~~li~~~~~~g~~~eAl~lf~ 430 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-----------------LDMDKIYHAKFFKACKKQRAVKEAFRFAK 430 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-----------------CCchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4678899999999999999999999999877622 13355677889999999999999999999
Q ss_pred HccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 003725 184 QTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH 263 (800)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (800)
.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 431 ~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 431 LIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred HcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 9975 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHH
Q 003725 264 GHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQ--LRVTPDKYVYSALI 341 (800)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li 341 (800)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++||
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 67899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVE 420 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (800)
.+|++.|++++|.++|+.|.+.|+.|+ .+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 421 EAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
+|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc
Q 003725 501 KQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK---CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSES 577 (800)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (800)
+.|+.||..+|+.++.+|++.|++++|.++|.++.... +...|+.++..+. +++++|.++.+.+..-+.
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------ 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS------ 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------
Confidence 99999999999999999999999999999999766654 3344888886554 246666665544432211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 657 (800)
.......+..++|..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++|+++++
T Consensus 819 ----g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 819 ----GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred ----cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 1111223456789999999999999999999999999888999999999999999888889999999999999843
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH
Q 003725 658 LNCLREACNIFKDMKLRGIKPDVV 681 (800)
Q Consensus 658 ~g~~~~A~~~~~~m~~~g~~pd~~ 681 (800)
. .++|..+|++|...|+.|+..
T Consensus 895 ~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 895 Y--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C--hHHHHHHHHHHHHcCCCCCcc
Confidence 2 478999999999999999986
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-60 Score=531.62 Aligned_cols=476 Identities=19% Similarity=0.300 Sum_probs=408.1
Q ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHH
Q 003725 191 VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVG-FSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYST 269 (800)
Q Consensus 191 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (800)
..+..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456688899999999999999999999987654 678888999999999988888889999988888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 270 IIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349 (800)
Q Consensus 270 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (800)
++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 88888888888888888888864 57788888888888888888888888888888888888888888888877777
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 350 IIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEM 429 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (800)
.+.+.+++..+. +.|..+|..+|++|+.+|++.|++++|.++|++|
T Consensus 240 ~~~~~~l~~~~~----------------------------------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 240 ARAGQQLHCCVL----------------------------------KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHH----------------------------------HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 776666665554 4556678999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 430 EGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVI 509 (800)
Q Consensus 430 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 509 (800)
.. +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++|+..
T Consensus 286 ~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 286 PE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred CC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 65 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 003725 510 THNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEG 589 (800)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 589 (800)
+++.++.+|++.|++++|.++|+ .+..++..+|+.||.+|++.|+.++|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~-~m~~~d~~t~n~lI~~y~~~G~~~~A~----------------------------- 411 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFD-RMPRKNLISWNALIAGYGNHGRGTKAV----------------------------- 411 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHH-hCCCCCeeeHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 99999999999999999999998 444444455555555555555555554
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 590 YNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYTMLIHGFCKLNCLREACNIF 668 (800)
Q Consensus 590 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 668 (800)
++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.|+++|++.|++++|.+++
T Consensus 412 ------~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 412 ------EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred ------HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 5555555556789999999999999999999999999999985 799999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHH
Q 003725 669 KDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIA 748 (800)
Q Consensus 669 ~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~ 748 (800)
++| ++.||..+|++|+.+|.. .|+.+.|...++++. ++.|+ +..+|+.|++
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~---------------~g~~~~a~~~~~~l~--~~~p~---------~~~~y~~L~~ 536 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRI---------------HKNLELGRLAAEKLY--GMGPE---------KLNNYVVLLN 536 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHH---------------cCCcHHHHHHHHHHh--CCCCC---------CCcchHHHHH
Confidence 887 589999999999999988 455778888888776 34453 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 749 RLCYTNNLVDALIVFDEMIDRGLEP 773 (800)
Q Consensus 749 ~~~~~g~~~~A~~~~~~~~~~g~~p 773 (800)
+|++.|++++|.+++++|.+.|++.
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999999853
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-59 Score=527.44 Aligned_cols=523 Identities=19% Similarity=0.295 Sum_probs=401.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 003725 103 RHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVL 182 (800)
Q Consensus 103 ~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 182 (800)
+.+..+|+.++..|++.|++++|..+++.|.... +..++..+|+.++.+|.+.++++.|.+++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------~~~~~~~t~~~ll~a~~~~~~~~~a~~l~ 146 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------PFTLPASTYDALVEACIALKSIRCVKAVY 146 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456678888888888888888888888776441 12356678888888888888888888888
Q ss_pred HHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 003725 183 FQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTL 262 (800)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (800)
..|.+.|+.||..+||.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 147 ~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888888888888888888888864 788888888888888888888888888888888888
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 263 HGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALIS 342 (800)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 342 (800)
+..+|+.++.++++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.||.
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~ 298 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLA 298 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888863 58888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
+|++.|++++|.++|++|.+.|+.|+ .+++.++.+|++.|++++|.+++..+.+.|+.||..+|++|+.+|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 88888888888888888888777777 67777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKK 501 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (800)
|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+
T Consensus 379 A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 7777777753 466777777777777777777777777777777777777777777777777777777777777764
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 003725 502 -QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCK 580 (800)
Q Consensus 502 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 580 (800)
.|+.|+..+|+.++.+|++.|++++|.++++
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~------------------------------------------------ 486 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIR------------------------------------------------ 486 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHH------------------------------------------------
Confidence 4677777777777777776666666665554
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003725 581 LLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNC 660 (800)
Q Consensus 581 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 660 (800)
+ .+..|+..+|++++.+|...|+++.|..+++.+.+.++. +..+|+.|+++|++.|+
T Consensus 487 -------------------~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 487 -------------------R---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGR 543 (697)
T ss_pred -------------------H---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCC
Confidence 1 134789999999999999999999999999998765443 57899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCch
Q 003725 661 LREACNIFKDMKLRGIKPDV-VLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPD 729 (800)
Q Consensus 661 ~~~A~~~~~~m~~~g~~pd~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 729 (800)
+++|.+++++|.+.|+.+.. .+|..+-.. .+..-.+. ...+...+-+.....+..+|.+.|..||
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~---~~~f~~~d-~~h~~~~~i~~~l~~l~~~~~~~gy~~~ 609 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQ---DHSFFSGD-RLHPQSREIYQKLDELMKEISEYGYVAE 609 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEEEECCe---EEEEccCC-CCCccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999986442 222111000 00000000 0112234446667778888888887774
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-38 Score=376.06 Aligned_cols=681 Identities=14% Similarity=0.091 Sum_probs=538.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchH-------------
Q 003725 76 VVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFE------------- 142 (800)
Q Consensus 76 v~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~------------- 142 (800)
.+..++...|+++.|...|+.+.+.. +.+..++..++.++...|++++|...++.+++..+.....
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 33445555667777777777765432 2255666667777777777777777777766654432111
Q ss_pred ---HHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003725 143 ---VIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEE 219 (800)
Q Consensus 143 ---~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (800)
....+....... +.....+..+...+...|++++|...|.++.+.. +.+...+..+...+.+.|++++|...++.
T Consensus 277 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 277 YEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 011111111111 1122344455666777888888888888877654 34566777788888888888888888888
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 003725 220 MKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA 299 (800)
Q Consensus 220 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (800)
+.... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +...
T Consensus 355 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 431 (899)
T TIGR02917 355 ALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELG 431 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Ccch
Confidence 87654 3466778888888888888888888888887754 2356677778888888888888888888888764 3344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Q 003725 300 FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLC 379 (800)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (800)
.....++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...|+++.+..+.....+..+...+.
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 510 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 56667788888899999999999988865 34577888899999999999999999999998876655577888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 380 QMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 380 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (800)
..|++++|.+.++++....+. +..++..+...+.+.|+.++|..+++++...+. .+...+..++..|...|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999877644 677888899999999999999999999987654 367788889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK- 538 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 538 (800)
+++.+.+.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...+++.+...
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999998754 3477889999999999999999999999998774 5567788889999999999999999999665532
Q ss_pred -CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 539 -CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVI 617 (800)
Q Consensus 539 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 617 (800)
+...+..++..+...|++++|..+++.+.+.++. +...+..+...+...|++++|.+.++.+.... |+..++..++
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~ 743 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLH 743 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHH
Confidence 3445888999999999999999999999888754 66778888899999999999999999998875 4456777889
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCC
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRG 697 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~ 697 (800)
.++...|++++|.+.++.+.+..+. +...+..++..|...|++++|.+.|+++.+.. +++...+..+...+..
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~----- 816 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE----- 816 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh-----
Confidence 9999999999999999999987655 88899999999999999999999999999863 4567777777777766
Q ss_pred CCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 698 SSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVI 777 (800)
Q Consensus 698 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 777 (800)
.++ .+|..+++++.+. .|+ +..++..++.+|...|++++|+++++++++.+. .+..+
T Consensus 817 ----------~~~-~~A~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~ 873 (899)
T TIGR02917 817 ----------LKD-PRALEYAEKALKL--APN---------IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAI 873 (899)
T ss_pred ----------cCc-HHHHHHHHHHHhh--CCC---------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHH
Confidence 333 5699999888764 343 778889999999999999999999999997653 38889
Q ss_pred HHHHHccccCCCCHHHHHhhhcC
Q 003725 778 YKALLCGCPTKKDVDKYLSLFAE 800 (800)
Q Consensus 778 ~~~l~~~~~~~g~~~~A~~~~~~ 800 (800)
+..++.++.+.|+.++|.+++++
T Consensus 874 ~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 874 RYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999998864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-37 Score=366.41 Aligned_cols=678 Identities=13% Similarity=0.039 Sum_probs=331.5
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHH----------
Q 003725 77 VNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDL---------- 146 (800)
Q Consensus 77 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l---------- 146 (800)
+...+...++++.|...|+.+.+... .+...+..++.++...|++++|..++++++...+... ..+.+
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV-DALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhcCC
Confidence 34444445677777777777654322 2455666666677777777777777777666533211 11111
Q ss_pred -------HHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003725 147 -------FEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEE 219 (800)
Q Consensus 147 -------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (800)
+..... ..+.+..++..++..+...|++++|...++.+.+... .+...+......+...|++++|...|++
T Consensus 209 ~~~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 209 IELALAAYRKAIA-LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQD 286 (899)
T ss_pred HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 111100 1122344455555555555555555555555544321 1222222333334444555555555554
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 003725 220 MKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA 299 (800)
Q Consensus 220 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (800)
+.+.+. .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+.
T Consensus 287 ~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 363 (899)
T TIGR02917 287 ALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDP 363 (899)
T ss_pred HHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 443321 111222223333444445555555554444432 1223334444444445555555555555444432 3334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-----------
Q 003725 300 FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN----------- 368 (800)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------- 368 (800)
..+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+....+...
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 444444555555555555555555544432 11333344444444444444444444444444333222
Q ss_pred -----------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 369 -----------------------YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKL 425 (800)
Q Consensus 369 -----------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 425 (800)
.++..+..++...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444444444444444444444444433222 233334444444444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 426 FNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVK 505 (800)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 505 (800)
++.+...++. +..++..+...+.+.|++++|...+.++.+.+. .+...+..++..+...|++++|..+++.+.+.. +
T Consensus 522 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 5544443221 344444444455555555555555555444321 233444445555555555555555555554432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 003725 506 PNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLT 583 (800)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 583 (800)
.+..++..+...+...|++++|...|++.+... ++..+..+...|.+.|++++|...|+++.+..+. +...+..++.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 344455555555555555555555555333211 2223445555555555555555555555544322 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
.+...|+.++|.++++.+.+.. +.+...+..+...+...|++++|...++.+.+.++ +..++..++.++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHH
Confidence 5555555555555555555443 33444455555555555555555555555555432 22444455555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchH
Q 003725 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCY 743 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 743 (800)
|.+.++++++.. +.+...+..+...|.. .|+.++|..+|+.+.+.. |+ +..++
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~---------------~g~~~~A~~~~~~~~~~~--p~---------~~~~~ 807 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLA---------------QKDYDKAIKHYRTVVKKA--PD---------NAVVL 807 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHH---------------CcCHHHHHHHHHHHHHhC--CC---------CHHHH
Confidence 666655555531 2233444444444443 345666777776666533 21 66667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccCCCCHHHHHhhhc
Q 003725 744 TVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLFA 799 (800)
Q Consensus 744 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 799 (800)
+.++..+.+.|+ .+|+++++++.+. .+-+..++..+...+...|++++|.++|+
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777 6677777777643 12233445556666777777777777765
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.1e-27 Score=279.85 Aligned_cols=637 Identities=12% Similarity=0.025 Sum_probs=348.3
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCc
Q 003725 79 KLDSFRKDPGAALTFFELLKARGFRHNV-HTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNV 157 (800)
Q Consensus 79 ~l~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 157 (800)
.+....++++.|.+.+..+... .|+. ..+..+++++.+.|+.++|...++++.+..|..... ..
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~-------------~~ 100 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAY-------------RS 100 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHH-------------HH
Confidence 4445567888888888877633 5566 556666777778888888888888887774432100 00
Q ss_pred hHH----------HHHHHHHHHHccCChHHHHHHHHHccCCCCccCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 003725 158 FYR----------VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKF-TCNFFMNQLLKCGEVDMVLVLYEEMKSVGFS 226 (800)
Q Consensus 158 ~~~----------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 226 (800)
... ....+.+.+...|++++|++.|+.+.+.+ +++.. ............|+.++|...++++.+.. +
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P 178 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-P 178 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-C
Confidence 000 01233446777788888888888877654 23321 22222222234578888888888887653 3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--hhcH-----------------HHHHHHHHhcCChhHHHHHH
Q 003725 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH--GHNY-----------------STIIQGLCENGRLDVGYDLL 287 (800)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~-----------------~~li~~~~~~g~~~~a~~~~ 287 (800)
.+...+..+...+...|+.++|++.++++.+...... ...| ...+..+-.....+.|...+
T Consensus 179 ~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L 258 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQL 258 (1157)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHH
Confidence 3556677777777788888888888888765321000 0000 00011111111223333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003725 288 LKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKT 367 (800)
Q Consensus 288 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 367 (800)
.........|... .......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..+..
T Consensus 259 ~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 259 AEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3333221112111 1223445556677777777777766643 2256666666777777777777777777766654432
Q ss_pred h--HHH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003725 368 N--YVV------------SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQ 433 (800)
Q Consensus 368 ~--~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (800)
. ..+ ......+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++.+..
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 111 11234455667777777777776665433 44555566666777777777777777766553
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 434 IVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHK--------PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVK 505 (800)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 505 (800)
.. +...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++|+..+++.++.. +
T Consensus 416 p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P 492 (1157)
T PRK11447 416 PG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-P 492 (1157)
T ss_pred CC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 22 3444555555543 34566666666554322100 001223444555666677777777777666653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc------
Q 003725 506 PNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSES------ 577 (800)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------ 577 (800)
.+...+..+...|.+.|++++|...+++.+... ++..+..+...+.+.++.++|+..++++......++...
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 345555666666667777777777776544322 222233344445566667777766666543322222111
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003725 578 ---CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHG 654 (800)
Q Consensus 578 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 654 (800)
+......+...|+.++|+++++. .+.+...+..+...+.+.|++++|...|+.+.+..+. +...+..++..
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~ 646 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEV 646 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 12234455566666666666651 1334445555666666666666666666666665444 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCC-chhhh
Q 003725 655 FCKLNCLREACNIFKDMKLRGIKPDVV-LYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEIS-PDVML 732 (800)
Q Consensus 655 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~ 732 (800)
|...|++++|++.++++.+. .|+.. .+..+...+.. .|+.++|.++++.+...... |.
T Consensus 647 ~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~---------------~g~~~eA~~~~~~al~~~~~~~~--- 706 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAA---------------LGDTAAAQRTFNRLIPQAKSQPP--- 706 (1157)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHh---------------CCCHHHHHHHHHHHhhhCccCCc---
Confidence 66666666666666665542 34322 22223333322 34466666666665542211 10
Q ss_pred ccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 733 GQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
...+...+..++..+...|++++|+..|++..
T Consensus 707 ---~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 707 ---SMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred ---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00012344455666666666666666666665
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-26 Score=272.36 Aligned_cols=614 Identities=12% Similarity=0.022 Sum_probs=430.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhc
Q 003725 75 EVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCY-CGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKE 153 (800)
Q Consensus 75 ~v~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (800)
.....+....|+.+.|...++.+.+.. |+...+......+.. .......... -.+... .....+....++.+...
T Consensus 66 ~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~-A~ll~~-~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 66 AARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQ-ARLLAT-TGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHH-HHHHHh-CCCHHHHHHHHHHHccC
Confidence 334566667899999999999987553 333233222222221 1111111111 111111 12234455666666443
Q ss_pred CCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---
Q 003725 154 GSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQF--- 230 (800)
Q Consensus 154 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--- 230 (800)
..+................|++++|+..|+++.+.. +.+...+..+...+...|+.++|+..++++..... .+..
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~-~~~~aa~ 219 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA-GRDAAAQ 219 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-chHHHHH
Confidence 322211111111222234699999999999999875 44677889999999999999999999999976421 0111
Q ss_pred h-----------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 231 T-----------------YDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN 293 (800)
Q Consensus 231 ~-----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 293 (800)
. +...+..+-.......|...++.+......|... .......+...|++++|...|++..+.
T Consensus 220 ~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 220 LWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 1111111112223445555665554432233322 124456678899999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHH
Q 003725 294 GIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP-DKYVY------------SALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 294 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
. +.+..++..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|++++|+..|+++
T Consensus 299 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 N-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4 5578899999999999999999999999998764221 11111 12245678899999999999999
Q ss_pred HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----
Q 003725 361 TSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP---- 436 (800)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---- 436 (800)
....+....++..+..++...|++++|++.|+++.+..+. +...+..+...|. .++.++|..+++.+.......
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 9987666678888999999999999999999999987654 4556666777764 467899999988765432110
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 437 ----DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHN 512 (800)
Q Consensus 437 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 512 (800)
....+..+...+...|++++|+..|++.++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~ 533 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVY 533 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 0223455677888999999999999999987543 56778889999999999999999999998764 44566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccC-ccC------------HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 003725 513 MIIEGLCTSGRVKEARAFFDDDLKEKC-LEN------------YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCC 579 (800)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (800)
.+...+...++.++|...++. +.... ... +..+...+...|+.++|..+++. ...+...+.
T Consensus 534 a~al~l~~~~~~~~Al~~l~~-l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~ 607 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNT-LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHh-CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHH
Confidence 666677889999999999984 33221 111 23456778899999999999872 223556778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 659 (800)
.+...+...|+.++|++.++++++.. +.+...+..++..|...|++++|.+.++.+.+..+. +...+..+..++...|
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCC
Confidence 88899999999999999999999875 456778889999999999999999999988875443 6677888889999999
Q ss_pred CHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHH
Q 003725 660 CLREACNIFKDMKLRGIK-PD----VVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE 723 (800)
Q Consensus 660 ~~~~A~~~~~~m~~~g~~-pd----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 723 (800)
++++|.++|++++...-. |. ...+..+...+ ...|+.++|.+.|+....
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~---------------~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE---------------AQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHh
Confidence 999999999999874211 11 12222333333 359999999999998864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6.8e-22 Score=221.79 Aligned_cols=217 Identities=12% Similarity=0.044 Sum_probs=160.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCC
Q 003725 77 VNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSN 156 (800)
Q Consensus 77 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (800)
...+....|+++.|+..|+.+.+.... +..++..+++++...|+.++|+..+++.++..+.
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~------------------ 110 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG------------------ 110 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc------------------
Confidence 345556669999999999999754323 5889999999999999999999999999888442
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHH--------HHHcCChhHHHHHHHHHHhCCCCCC
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQ--------LLKCGEVDMVLVLYEEMKSVGFSLN 228 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~m~~~~~~~~ 228 (800)
+...+..+ ...+++++|..+|+++.... +-+..++..+... |.+.++...++. .......|+
T Consensus 111 -n~~~~~~L----a~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~ 180 (987)
T PRK09782 111 -DARLERSL----AAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPE 180 (987)
T ss_pred -cHHHHHHH----HHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCC
Confidence 22223333 22289999999999999875 3355666666665 666655555554 333223345
Q ss_pred HHhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 229 QFTYDIV-IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE-NGRLDVGYDLLLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 229 ~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 306 (800)
..+.... .+.|.+.|++++|+++++++.+.+. .+..-...|...|.. .++ +.+..+++. ....+...+..++
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 5555555 8999999999999999999999873 355557777778887 366 777777553 2335788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003725 307 REFCQNSRLVEAESVLLRMKQL 328 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~ 328 (800)
..|.+.|+.++|.++++++...
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCccc
Confidence 9999999999999999998754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5.3e-22 Score=222.66 Aligned_cols=217 Identities=11% Similarity=-0.054 Sum_probs=163.9
Q ss_pred HHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCH
Q 003725 115 ILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSK 194 (800)
Q Consensus 115 ~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 194 (800)
.+...|++++|...|+++++..|. +..++..|...|...|++++|+..+++..+.+ +-|.
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~-------------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~ 112 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPD-------------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDA 112 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccH
Confidence 334469999999999999988554 35577899999999999999999999999875 2345
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCcChhc
Q 003725 195 FTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKA--------LCKLARFEEAFDVLNEMNKAGVTLHGHN 266 (800)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 266 (800)
..+..+.. + +++++|..+++++.... +-+..++..+... |.+. ++|.+.++ .......|+..+
T Consensus 113 ~~~~~La~-i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~v 183 (987)
T PRK09782 113 RLERSLAA-I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKT 183 (987)
T ss_pred HHHHHHHH-h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHH
Confidence 55554422 2 99999999999998864 2345555555554 5554 66666665 333333444555
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 267 YSTI-IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ-NSRLVEAESVLLRMKQLRVTPDKYVYSALISGY 344 (800)
Q Consensus 267 ~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 344 (800)
.... ...|.+.|++++|++++.++.+.+ +.+......+...|.. .++ +++..+++. ....+...+..++..|
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~y 257 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATAL 257 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHH
Confidence 5555 899999999999999999999986 5566667778888887 466 888888654 2235888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 003725 345 CKCGNIIKALSLHGEMTSIGIK 366 (800)
Q Consensus 345 ~~~g~~~~A~~~~~~~~~~~~~ 366 (800)
.+.|+.++|..+++++......
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccC
Confidence 9999999999999998765443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-20 Score=195.47 Aligned_cols=644 Identities=12% Similarity=0.038 Sum_probs=403.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHcc-----------CC
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSE-----------RM 174 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~ 174 (800)
..+|..++.-|...|..+++..+++..+......--++- .....+++.|...+... ..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~-----------~~~~~a~~~laay~s~~a~kek~~~~k~e~ 109 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVK-----------SDQMKALDILAAYYSQLAMKEKKKDEKDEL 109 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchH-----------HHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 468999999999999999999999987632111100000 00111222222222111 12
Q ss_pred hHHHHHHHHHccCCCCc-cCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 003725 175 FDQALNVLFQTDRPGFV-WSKFTCNFFMNQLLKCGE--VDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDV 251 (800)
Q Consensus 175 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 251 (800)
+..|...|...-+.... +........ .|...|. ++.|...|....+.. ++|+-.+---.......|++..|+.+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHH
Confidence 23344444332221111 111111111 1222333 578888888877653 34444433333333457888899999
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhC
Q 003725 252 LNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQN---SRLVEAESVLLRMKQL 328 (800)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 328 (800)
|..+...+..--+.....+..++.+.|+.+.|+..|.+..+.+ |.++.++..|...-... ..+..+..++...-..
T Consensus 187 yk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 187 YKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh
Confidence 9887664332222333445566778888888888888888875 33444444444333332 3355666666665544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 329 RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVC 405 (800)
Q Consensus 329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 405 (800)
+ .-++...+.|...|.-.|+++.+..+...+........ ..+..+.+++...|++++|...|.+..+.....-...
T Consensus 266 n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 266 N-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred c-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 3 24667777888888888899988888888876553322 5678888888889999999888877766543322334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRG----KLVDAIGLFKKMREMGHKPDIKAYNVLAR 481 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (800)
+--|...|.+.|+++.+...|+.+....+. +..+...|...|...+ ..+.|..++.+..+.- ..|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 445778888888999998888888776332 5566666666666654 4567777777776653 236677777776
Q ss_pred HHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCccC--------HHH
Q 003725 482 GLAQYGSVRDALDCLKYMK----KQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKE----KCLEN--------YSA 545 (800)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--------~~~ 545 (800)
.+... +...++.++..+. ..+-++.+...+.+...+...|.++.|...|.+.... .+.+. -..
T Consensus 423 l~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 66544 3333466665544 4455677788888888888888988888888865443 11111 223
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 546 MVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGK 625 (800)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 625 (800)
+...+-..++.+.|.+.|..+....+. -...+..++......+...+|...+...+..+ ..++..+..+...+.+...
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 455556677888888888888877543 22233333323334467788888888887654 4555566666777888888
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHh
Q 003725 626 IKWAHQVFDFLTRH-GLIPDLISYTMLIHGFCK------------LNCLREACNIFKDMKLRGIKPD-VVLYTILCDAYS 691 (800)
Q Consensus 626 ~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~ 691 (800)
+..|.+-|....+. ...+|..+.-.|.+.|.+ .+..++|+++|.+.+.. .|- ...-+-+-..++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhh
Confidence 88888877766642 222566666677775542 34577788888888764 333 222222222222
Q ss_pred ccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 692 KINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
.+|.+.+|..+|....+.... +..+|-.++.+|...|.|-.|+++|+.....-.
T Consensus 658 ---------------~kg~~~~A~dIFsqVrEa~~~-----------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 658 ---------------EKGRFSEARDIFSQVREATSD-----------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred ---------------hccCchHHHHHHHHHHHHHhh-----------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888764332 566788888888888888888888888765533
Q ss_pred -CCCHHHHHHHHccccCCCCHHHHHhhh
Q 003725 772 -EPNIVIYKALLCGCPTKKDVDKYLSLF 798 (800)
Q Consensus 772 -~p~~~~~~~l~~~~~~~g~~~~A~~~~ 798 (800)
.-+..+...|..++...|.+.+|.+.+
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445556677888888888888887654
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.4e-20 Score=190.26 Aligned_cols=571 Identities=12% Similarity=0.076 Sum_probs=421.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHH
Q 003725 87 PGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMV 166 (800)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll 166 (800)
.+.|...|..+.+.. ++|...+..-+++.-..|++..|..+|..++...+....+ +...+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD------------------~rIgig 206 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD------------------VRIGIG 206 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC------------------ccchhh
Confidence 478999999987542 3466666666677777899999999999988775543222 223344
Q ss_pred HHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 003725 167 KAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCG---EVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243 (800)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 243 (800)
.++.+.|+.+.|+..|.+..+.+. .++.++-.|...-.... .+..+..++...-... ..|+...+.|.+.|.-.|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKK 284 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcc
Confidence 666788999999999999998763 34444444443333333 3455666666654332 357788899999999999
Q ss_pred ChhHHHHHHHHHHhCCCC--cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVT--LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESV 321 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 321 (800)
++..+..+.+.+...... .-...|-.+.++|-..|++++|..+|.+..+..-.--...+..+.+.+.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 999999999988774311 233568889999999999999999999988864222255667889999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 003725 322 LLRMKQLRVTPDKYVYSALISGYCKCG----NIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFK-- 395 (800)
Q Consensus 322 ~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 395 (800)
|+.+.+.. +.+..+...|...|...+ ..++|..++.+..+..+.....|..+...+....-+.. +..|..+.
T Consensus 365 fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~ 442 (1018)
T KOG2002|consen 365 FEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDI 442 (1018)
T ss_pred HHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHH
Confidence 99998763 345677888888887775 67888888888888765555778777777766655544 66665543
Q ss_pred --HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 396 --SMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGR---QIVPDV------ANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 396 --~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
..+-.+.+...|.+...+...|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.|..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4455577888999999999999999999999998765 122232 23334556666778999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--cc
Q 003725 465 REMGHKPD-IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LE 541 (800)
Q Consensus 465 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~ 541 (800)
.+. .|. +..|..++......+...+|...++...... ..++..+..+...+.+...+..|.+-|+..+.... .+
T Consensus 523 lke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 523 LKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 886 344 3456666544445678889999999988764 55666777778788888888888887774444332 23
Q ss_pred CHH--HHHHHHH------------ccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 542 NYS--AMVDGYC------------EANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAK 607 (800)
Q Consensus 542 ~~~--~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 607 (800)
+|. +|.+.|. ..+.+++|+.+|.+++..++. |...-+-+...++..|++++|..+|.+..+...
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~- 677 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS- 677 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-
Confidence 343 3333332 234578999999999988766 677778888889999999999999999988753
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 608 PSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 608 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 685 (800)
....+|..+.++|..+|++..|.++|+...+ .....+......|..++.+.|.+.+|.+.....+.....-..+-||.
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 3455788899999999999999999998774 55566888899999999999999999999888886532223344443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-21 Score=193.18 Aligned_cols=436 Identities=17% Similarity=0.111 Sum_probs=282.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 003725 197 CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE 276 (800)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 276 (800)
...|.+-..+.|+++.|.+.-...-..+ +.+....-.+-..+.+..+++....--....+.. ..-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4566677777888888877665543332 2233344444455666666666555544444433 2345677778888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 003725 277 NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYS-ALISGYCKCGNIIKALS 355 (800)
Q Consensus 277 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~ 355 (800)
.|+++.|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+. .|+..... -+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888877763 445677777888888888888888887777764 45544432 33444555677777777
Q ss_pred HHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 356 LHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIV 435 (800)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (800)
.+.+.++..+....+|+.+...+-..|+.-.|+..|++..+.++.. ...|-.|...|...+.+++|+..+.+.....+.
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 7777776655444677777777777777777777777777665442 445666777777777777777777776654221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003725 436 PDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD-IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMI 514 (800)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (800)
....+..+...|..+|..+-|+..|++.++. .|+ ...|+.|..++-..|+..+|.+.+.+.+... +..+...+.|
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3456666666777777777777777777665 343 4567777777777777777777777776653 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
...|...|.+++|..+|...+. -.+. -...++.+...|-+.|+.++|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--------------------------------v~p~-~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--------------------------------VFPE-FAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--------------------------------hChh-hhhhhhhHHHHHHhcccHHHH
Confidence 6667777777777666663333 2111 122344455555555555555
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPS-KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+..+++.++- .|+ ...|+.+...|-..|+.+.|.+.+.++...++. =....+.|...|-..|+..+|+.-|++.++
T Consensus 408 i~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 408 IMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 5555555542 343 335677777788888888888888877775443 356677788888888888888888888875
Q ss_pred cCCCCCH
Q 003725 674 RGIKPDV 680 (800)
Q Consensus 674 ~g~~pd~ 680 (800)
++||.
T Consensus 485 --lkPDf 489 (966)
T KOG4626|consen 485 --LKPDF 489 (966)
T ss_pred --cCCCC
Confidence 56663
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=9.7e-22 Score=194.13 Aligned_cols=432 Identities=13% Similarity=0.074 Sum_probs=331.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 003725 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC 240 (800)
Q Consensus 161 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 240 (800)
....|..-..+.|++.+|.+.-...-..+ +.+....-.+-..+....+.+.....-....+. .+.-..+|..+.+.+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 35678888889999999999877666554 334444445556677777777766655444443 2345679999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
..|++++|+.+|+.+++.. +.....|..+..++...|+.+.|.+.|.+.++.+ |...-..+.+...+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999999875 2367899999999999999999999999999873 3233344556666677999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 321 VLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGI 399 (800)
Q Consensus 321 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 399 (800)
.|.+..+. .| =.+.|+.|...+-.+|+...|+..|++..+.++....+|..+...|...+.+++|+..|.+.....+
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 99888875 33 3567899999999999999999999999987666669999999999999999999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003725 400 FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVL 479 (800)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (800)
. ....+..+...|...|.+|.|+..+++..+..+. -...|+.|..++-..|++.+|...|.+.+..... ...+.+.|
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NL 360 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNL 360 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 4 5667788888899999999999999999987433 4689999999999999999999999999887432 56789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--ccCHHHHHHHHHccCCHH
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LENYSAMVDGYCEANHLE 557 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 557 (800)
...+...|.+++|..+|....+-. +.-....+.|...|-..|++++|+..+++.+.-+. .+.|+.+...|...|+.+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999999988752 33356677788888888888888888886555332 233666666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 558 EAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603 (800)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 603 (800)
.|+..+.+.+..++. -...++.+...+-..|++.+|+.-+++.++
T Consensus 440 ~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 666666666655432 223344444444444444444444444443
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=5.1e-17 Score=169.08 Aligned_cols=653 Identities=11% Similarity=0.060 Sum_probs=433.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHc
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQT 185 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 185 (800)
.......+..+-..|+.++|..++.+++++.+. +...|..|...|-++|+.+.+...+-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-------------------~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-------------------NPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-------------------chhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344445555666679999999999999998443 4567899999999999999999887666
Q ss_pred cCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChh
Q 003725 186 DRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGH 265 (800)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (800)
-..+ +.|...|..+.....+.|.++.|.-.|.+..+.. +++...+---+..|-+.|+...|.+-|.++.....+.+..
T Consensus 200 AHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 200 AHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred HhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 5554 4567899999999999999999999999999875 4555555566778889999999999999998865322222
Q ss_pred ----cHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---------
Q 003725 266 ----NYSTIIQGLCENGRLDVGYDLLLKWSENG-IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVT--------- 331 (800)
Q Consensus 266 ----~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------- 331 (800)
.-...++.+...++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+......
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 22334566777788899998888887732 2345567888899999999999999888887762212
Q ss_pred ------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHH
Q 003725 332 ------------------PDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKK 390 (800)
Q Consensus 332 ------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~ 390 (800)
++.... -++-++......+....+.......+..+. ..+..+..++.+.|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 222221 122233334444444444445555554444 6778899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 003725 391 FKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE---- 466 (800)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 466 (800)
|..+......-+...|-.+..+|...|.+++|.+.|+.++...+. +...-..|...+.+.|+.++|.+.+..+..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 999998876667888999999999999999999999999876433 455666777788899999999999988642
Q ss_pred ----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHh
Q 003725 467 ----MGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQG----------------------VKPNVITHNMIIEGLCT 520 (800)
Q Consensus 467 ----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~ 520 (800)
.+..|+..........+.+.|+.++-+.....|+... .+-.......++.+-.+
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 2334555555666677778888877666555554321 11222233344444444
Q ss_pred cCCHHHHHHHHHHH-----Hh--ccCccC----HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-Chh----cHHHHHHH
Q 003725 521 SGRVKEARAFFDDD-----LK--EKCLEN----YSAMVDGYCEANHLEEAFQFFMTLSQRGFLM-RSE----SCCKLLTN 584 (800)
Q Consensus 521 ~g~~~~a~~~~~~~-----~~--~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----~~~~l~~~ 584 (800)
.++.....+-.... .. .-.... +..++..+++.+++++|+.+...+......- +.. .-...+.+
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~ 675 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA 675 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence 44432222221110 00 111111 3556778899999999999998888765321 222 22345567
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003725 585 LLIEGYNNKAFKLLDTMLKL-DAK--P-SKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNC 660 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~-~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 660 (800)
.+..+++..|.+.++.|+.. +.. | -...|+...+...+.|+-.-=.+.+..+......-+...+....+.....+.
T Consensus 676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc
Confidence 78889999999999999865 111 1 1224554555555555544444444444443333234444444555678899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCC
Q 003725 661 LREACNIFKDMKLRGIKPDVVLYTILCDAY-SKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPD 739 (800)
Q Consensus 661 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~ 739 (800)
+.-|+..+-+... ..||....+..+..- .+....+ .+....-.+.++..++..-.+....-+ .
T Consensus 756 ~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr-----~v~~Rh~~i~qG~afL~RY~~lR~~~~---------~ 819 (895)
T KOG2076|consen 756 FKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQR-----RVSNRHAQIAQGFAFLKRYKELRRCEE---------K 819 (895)
T ss_pred hHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHhhccHH---------H
Confidence 9999998887776 478865555443221 1100000 000111224445555544443211101 4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHccccCCCCHHHHHhhhcC
Q 003725 740 TVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN--------------IVIYKALLCGCPTKKDVDKYLSLFAE 800 (800)
Q Consensus 740 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 800 (800)
.+++-.++++|-..|-..-|+.+|++.+ ++.|- ...|| |.-.|.++|++..|..++++
T Consensus 820 QEa~YNigRayh~~gl~~LA~~YYekvL--~~~p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 820 QEAFYNIGRAYHQIGLVHLAVSYYEKVL--EVSPKDVTDPKEDNYDLRKEAAYN-LHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHh--CCCccccccccCCcccHHHHHHhh-hhhhhccCCcHHHHHHHHHh
Confidence 5567789999999999999999999999 45432 22455 44589999999999998764
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.4e-18 Score=188.81 Aligned_cols=256 Identities=15% Similarity=0.101 Sum_probs=193.8
Q ss_pred cCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHH
Q 003725 486 YGSVRDALDCLKYMKKQG-V-KPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQ 561 (800)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 561 (800)
.+++++|...++...+.+ . +.....+..+...+...|++++|...+++.+... ....|..+...+...|++++|..
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 466778888888777654 1 2234556667777777888888888888655432 23346777778888888888888
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003725 562 FFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL 641 (800)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 641 (800)
.|+++.+.++. +...+..+...+...|++++|+..+++.++.. +.+...+..+..++.+.|++++|...|+...+..+
T Consensus 387 ~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88888877544 56788888888999999999999999998875 44567788888999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHH---HHH-HHhccCCCCCCCCCCcccCchhHHHHHH
Q 003725 642 IPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV-VLYTI---LCD-AYSKINKRGSSSSPHTLRSNEEVVDASD 716 (800)
Q Consensus 642 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~---ll~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 716 (800)
. +...|+.+..++...|++++|++.|++.++. .|+. .++.. ++. +... ....+++++|.+
T Consensus 465 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~------------~~~~~~~~eA~~ 529 (615)
T TIGR00990 465 E-APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALAL------------FQWKQDFIEAEN 529 (615)
T ss_pred C-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHH------------HHHhhhHHHHHH
Confidence 4 6888999999999999999999999999874 4431 11111 111 1110 012467899999
Q ss_pred HHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 717 FLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDR 769 (800)
Q Consensus 717 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 769 (800)
++++..... |+ +..++..++.++...|++++|+++|++..+.
T Consensus 530 ~~~kAl~l~--p~---------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 530 LCEKALIID--PE---------CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhcC--CC---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999887643 43 6678999999999999999999999999754
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.2e-19 Score=191.55 Aligned_cols=301 Identities=14% Similarity=0.109 Sum_probs=198.3
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC---hhcHHHHHHHHHhcCC
Q 003725 203 QLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH---GHNYSTIIQGLCENGR 279 (800)
Q Consensus 203 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 279 (800)
.+...|+++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4455666666666666666543 23444666666666666677777766666665321111 2345666666666777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 003725 280 LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALS 355 (800)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~ 355 (800)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777666542 445566667777777777777777777776665422221 234455666667777777777
Q ss_pred HHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 356 LHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIV 435 (800)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (800)
.++++.+..+.....+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|++++|...++.+.+..
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 777776654433355666667777777777777777777665433334566777888888888888888888877653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 436 PDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ---YGSVRDALDCLKYMKKQGVKPNVI 509 (800)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 509 (800)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++.|.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45556677778888888888888888887765 5777777777776664 457788888888888776666654
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.2e-17 Score=185.28 Aligned_cols=254 Identities=12% Similarity=0.028 Sum_probs=156.3
Q ss_pred CCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 417 GEVEEAVKLFNEMEGRQ-IVP-DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALD 494 (800)
Q Consensus 417 g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (800)
+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..|++.++.... +...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666665442 112 2344555555566666666666666666554211 24455555566666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 003725 495 CLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFL 572 (800)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (800)
.++.+.+.. +.+..++..+...+...|++++|...|++.+... +...+..+...+.+.|++++|+..|++.....+.
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 666665543 3345556666666666666666666666444322 2222555566666667777777777766655432
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003725 573 MRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT------TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLI 646 (800)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 646 (800)
+...+..+...+...|++++|++.+++.++.....+.. .++..+..+...|++++|..+++++.+.++. +..
T Consensus 466 -~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~ 543 (615)
T TIGR00990 466 -APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDI 543 (615)
T ss_pred -ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHH
Confidence 45566677777777777777777777777653221111 1122222334468999999999988876544 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
.+..++..+.+.|++++|++.|++..+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7888899999999999999999998764
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=5.2e-19 Score=186.54 Aligned_cols=302 Identities=12% Similarity=0.084 Sum_probs=253.5
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLN---QFTYDIVIKALCKL 242 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 242 (800)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567799999999999999875 34677899999999999999999999999987532221 24678889999999
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLN----AFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 318 (800)
|++++|.++|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998764 35678899999999999999999999999988753322 22456778888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSM 397 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 397 (800)
...|+++.+.. +.+...+..++..+.+.|++++|.++++++...++... .++..++.++...|+.++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 33566888899999999999999999999998765544 67788999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 003725 398 GIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL---RGKLVDAIGLFKKMREMGHKPDIK 474 (800)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 474 (800)
. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5 44556688999999999999999999998876 5788899988887775 568999999999999877666554
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=4.8e-17 Score=179.44 Aligned_cols=331 Identities=14% Similarity=0.074 Sum_probs=232.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
..++..+.+.|++++|+.+++....... -+..++..++.+....|+++.|...|+++.... +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 4456677778888888888888776643 345555666667777888888888888887753 34556777777888888
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888887753 2356677778888888888888888888776653 2333344333 3467788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 003725 323 LRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE----AIKKFKEFKSMG 398 (800)
Q Consensus 323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~ 398 (800)
+.+.+....++...+..+...+...|++++|...++++....+.....+..+...+...|++++ |...+++..+..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 8877654333444555556777788888888888888877665555667777777777887775 677777777665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 003725 399 IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI-KAYN 477 (800)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 477 (800)
+. +...+..+...+...|++++|...+++.....+. +...+..+...+.+.|++++|...|+++...+ |+. ..+.
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 43 5667777777777778888888887777765433 45566667777777788888887777777653 333 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 478 VLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
.+..++...|+.++|...|+...+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455667777777787777777665
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.9e-16 Score=178.81 Aligned_cols=422 Identities=11% Similarity=0.009 Sum_probs=263.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 306 (800)
.+..-..-.+......|+.++|++++....... ..+...+..+...+...|++++|.+++++..+.. |.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344445555666667788888888887776522 3344567777777888888888888888877763 45566677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHH
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE 386 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 386 (800)
..+...|++++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+..+.....+..+..++...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 77788888888888888877652 23444 77777777788888888888888877766655555556666667777777
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHH
Q 003725 387 AIKKFKEFKSMGIFLDQ------VCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL---VDA 457 (800)
Q Consensus 387 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A 457 (800)
|++.++.+.. .|+. .....++......+ ....+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHH
Confidence 7776665443 1210 00011111111000 0111122 445
Q ss_pred HHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 458 IGLFKKMREM-GHKPDIK-AY----NVLARGLAQYGSVRDALDCLKYMKKQGVK-PNVITHNMIIEGLCTSGRVKEARAF 530 (800)
Q Consensus 458 ~~~~~~~~~~-~~~p~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~ 530 (800)
+..++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 5555555432 1111111 00 01122334445666666666665554321 211 112234455566666666666
Q ss_pred HHHHHhccCc------cCHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCCh---hcHHHHHHHHHhcCC
Q 003725 531 FDDDLKEKCL------ENYSAMVDGYCEANHLEEAFQFFMTLSQRGF-----------LMRS---ESCCKLLTNLLIEGY 590 (800)
Q Consensus 531 ~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~ 590 (800)
|++.+..... .....+..++.+.|++++|..+++++....+ .|+. ..+..+...+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 6643332211 1133444455666666666666666665432 1222 234566778888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 591 NNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKD 670 (800)
Q Consensus 591 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 670 (800)
.++|++.+++++... +.+...+..++..+...|++++|++.++++.+..+. +...+..++..+.+.|++++|..++++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998765 556778888999999999999999999999986544 577777888889999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHH
Q 003725 671 MKLRGIKPDVVLYTILCDAY 690 (800)
Q Consensus 671 m~~~g~~pd~~~~~~ll~~~ 690 (800)
+++. .|+......+-..+
T Consensus 453 ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 453 VVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHh--CCCCHHHHHHHHHH
Confidence 9984 78776665555554
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.2e-16 Score=176.37 Aligned_cols=358 Identities=14% Similarity=0.069 Sum_probs=231.7
Q ss_pred HccCChHHHHHHHHHccCCCC--ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 003725 170 CSERMFDQALNVLFQTDRPGF--VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEE 247 (800)
Q Consensus 170 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 247 (800)
.++.+++.---+|....+.-- .-+..-...++..+.+.|+.+.|+.+++...... +-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 345666665555555443210 1112223345566777788888888887777653 2334455555566667788888
Q ss_pred HHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003725 248 AFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQ 327 (800)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (800)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888888877754 2345667777777778888888888888777753 44566777777778888888888887777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003725 328 LRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCY 406 (800)
Q Consensus 328 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 406 (800)
.... +...+..+ ..+...|++++|...++.+......++ .....+..++.+.|++++|+..++++....+. +...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 4322 22233222 336677888888887777766544333 34444556677777777777777777766543 45666
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003725 407 NVIMDALCKLGEVEE----AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARG 482 (800)
Q Consensus 407 ~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (800)
..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 667777777777764 67777777765433 5667777777777777777777777777765432 45556667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 483 LAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK 536 (800)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (800)
+.+.|++++|...++.+.+.+ +.+...+..+..++...|+.++|...|++.+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777653 22223333345567777777777777775444
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=4.4e-16 Score=175.91 Aligned_cols=432 Identities=11% Similarity=0.041 Sum_probs=269.4
Q ss_pred HHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 179 LNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA 258 (800)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 258 (800)
+..+++ .+.+ ..+..-..-.+.+....|+.++|+.++.+..... +.+...+..+...+.+.|++++|.++|++.++.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 2222 3455555666788899999999999999997632 355667899999999999999999999999886
Q ss_pred CCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003725 259 GVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYS 338 (800)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 338 (800)
. +.+...+..++..+...|++++|...++++.+.. +.+.. +..+...+...|+.++|...++++.+... .+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 4 3356778888899999999999999999999873 55667 88899999999999999999999998742 3556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------HHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCC
Q 003725 339 ALISGYCKCGNIIKALSLHGEMTSIGIKTNY-------VVSVILKCLCQ-----MGKT---SEAIKKFKEFKSM-GIFLD 402 (800)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~ 402 (800)
.+...+...|..++|++.++.... .|+. .....+..... .+++ ++|++.++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 788888899999999999987664 2210 11112222211 1122 4455555555533 11111
Q ss_pred HH-HHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CH
Q 003725 403 QV-CYN----VIMDALCKLGEVEEAVKLFNEMEGRQIV-PDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP---DI 473 (800)
Q Consensus 403 ~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~ 473 (800)
.. .+. ..+.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 111 1122334445556666666655554321 221 11113445555555666666555554432110 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHcc
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEA 553 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (800)
.....+..++...|++++|..+++.+.+.. ++....+.. .....+. .....+..+...+...
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~------~~~~p~~-----------~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGS------PTSIPND-----------DWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCC------CCCCCCc-----------hHHHHHHHHHHHHHHc
Confidence 233344444555555555555555555431 111000000 0000000 0000123455566677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 554 NHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVF 633 (800)
Q Consensus 554 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 633 (800)
|++++|+++++++....+. +...+..+...+...|++++|++.++++++.. +.+...+...+..+...|++++|...+
T Consensus 373 g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7777777777777766544 46677777778888888888888888887765 334555666666788888899999988
Q ss_pred HHHHHCCC
Q 003725 634 DFLTRHGL 641 (800)
Q Consensus 634 ~~~~~~~~ 641 (800)
+.+++..+
T Consensus 451 ~~ll~~~P 458 (765)
T PRK10049 451 DDVVAREP 458 (765)
T ss_pred HHHHHhCC
Confidence 88887533
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=5e-13 Score=134.17 Aligned_cols=604 Identities=11% Similarity=-0.015 Sum_probs=282.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHH
Q 003725 86 DPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAM 165 (800)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 165 (800)
+..+|..++..+.+.+.. ++..|-+-++.=-..|.+..|..+..+-.+..+. +.++|..-
T Consensus 266 DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-------------------SeDvWLea 325 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-------------------SEDVWLEA 325 (913)
T ss_pred HHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-------------------hHHHHHHH
Confidence 556788888887766544 4556666666666677888887777665554221 22222222
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
++ ..-.+.|..+.-...+.. +.++..|--..+. ..+...=.++++...+. ++.++..|-.. ....+.
T Consensus 326 iR----Lhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~ 392 (913)
T KOG0495|consen 326 IR----LHPPDVAKTVVANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEP 392 (913)
T ss_pred Hh----cCChHHHHHHHHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccCh
Confidence 21 122333333333333221 1122222111111 11111222333333332 12222222222 222333
Q ss_pred hHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 246 EEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRM 325 (800)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (800)
+.|.-++....+.- +.+. -|.-++.+..-|+.|..++....+. ++.+..+|.+-...--.+|+.+...+++++-
T Consensus 393 ~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 393 EDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444444321 1111 2223334444455555555555543 3444445544444444455555554444432
Q ss_pred H----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 326 K----QLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMG 398 (800)
Q Consensus 326 ~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 398 (800)
. ..|+..+...|..=...+-+.|..--+..+....+..|+... .+|..-...|.+.+.++-|..+|....+--
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 2 234444555554444455555555555555555555544433 444555555555555555555555444332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 399 IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNV 478 (800)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (800)
+. +...|......--..|..++...+|++....- +-....|-.....+-..|++..|..++....+.... +...|..
T Consensus 547 p~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwla 623 (913)
T KOG0495|consen 547 PC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLA 623 (913)
T ss_pred cc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 21 33444444444444455555555555555431 113333444444444555555555555555544322 4444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--ccCHHHHHHHHHccCCH
Q 003725 479 LARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LENYSAMVDGYCEANHL 556 (800)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 556 (800)
-+.....+..++.|..+|.+.... .|+..+|.--+...--.++.++|.+++++.++.-. ...|..+.+.+-+.++.
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 555555555555555555554443 33433443333333344555555555554444321 11244444455555555
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 557 EEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFL 636 (800)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 636 (800)
+.|.+.|..-.+.-+. ....|..+...--+.|.+-+|..++++..-.+ +.+...|...|.+-.+.|+.+.|..++.++
T Consensus 702 e~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555544432222111 12223333333344455555555555554444 345555666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHH
Q 003725 637 TRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASD 716 (800)
Q Consensus 637 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 716 (800)
++.-+. +-..|.--|....+.++-..+...+++ +.-|.....++...+-. ...++.|.+
T Consensus 780 LQecp~-sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~---------------e~k~~kar~ 838 (913)
T KOG0495|consen 780 LQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWS---------------EKKIEKARE 838 (913)
T ss_pred HHhCCc-cchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHH---------------HHHHHHHHH
Confidence 654222 445555555555555553333333333 23343333333333322 445666666
Q ss_pred HHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 717 FLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 717 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
.|......+ || +..+|..+...+...|.-++-.+++.+..
T Consensus 839 Wf~Ravk~d--~d---------~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 839 WFERAVKKD--PD---------NGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHccC--Cc---------cchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 666655433 32 56667777777777777777777777665
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=5.4e-15 Score=163.15 Aligned_cols=451 Identities=14% Similarity=0.082 Sum_probs=226.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 268 STIIQGLCENGRLDVGYDLLLKWSENGIPLN-AFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346 (800)
Q Consensus 268 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 346 (800)
-.-+-...+.|+++.|++.|++..+.. +.+ ...+ .++..+...|+.++|+.++++.... -.........+...|..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 333444567777788888877777763 222 1233 6777777777777887777777621 11223333334556777
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (800)
.|++++|+++++++.+..+....++..++..+...++.++|++.++++..... +...+..++..+...++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHHHHHH
Confidence 77777777777777777666555555666777777777777777777666533 3333433333333344554577777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKP 506 (800)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 506 (800)
+++.+.++. +...+..+...+.+.|-...|.++..+-.+. +. ...+..|-. +.+.+..+ .+..+
T Consensus 193 ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l~~--------~~~a~~vr----~a~~~ 256 (822)
T PRK14574 193 SEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQLER--------DAAAEQVR----MAVLP 256 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHHHH--------HHHHHHHh----hcccc
Confidence 777766432 5566666666777777766666555543221 11 111111100 00000000 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCccC-------HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc
Q 003725 507 NVITHNMIIEGLCTSGRVKEARAFFDDDLKE--KCLEN-------YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSES 577 (800)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (800)
+..- - .+.--.+.|..-++..+.. +.++. ..-.+-++...|++.++++.|+.+...+......+
T Consensus 257 ~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 257 TRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred cccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0000 0 0000112222222211110 11110 11223344555556666666666655554444445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDA-----KPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL----------- 641 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------- 641 (800)
...+..+|...+.+++|..+++.+..... .++......|..+|...+++++|..+++.+.+..+
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 55555666666666666666665544321 11222234555566666666666666666554211
Q ss_pred --CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHH
Q 003725 642 --IPDL-ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD-VVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDF 717 (800)
Q Consensus 642 --~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 717 (800)
.||- ..+..++..+.-.|++.+|++.++++... .|. ......+...+.. +|.+.+|++.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~---------------Rg~p~~A~~~ 472 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLA---------------RDLPRKAEQE 472 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh---------------cCCHHHHHHH
Confidence 1121 12233344455666666666666666543 333 2233333333332 4556666666
Q ss_pred HHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 718 LEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 718 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
++..... .|+ +..+....+.++...|++++|..+.+.+.+ ..|+..
T Consensus 473 ~k~a~~l--~P~---------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 473 LKAVESL--APR---------SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred HHHHhhh--CCc---------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 6444432 333 555555666666666666666666666653 344444
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=7.9e-15 Score=161.85 Aligned_cols=203 Identities=14% Similarity=0.030 Sum_probs=114.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc
Q 003725 447 GYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQG-----VKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 521 (800)
++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+.... .+++......|..+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 444455555555555555554433333344455555555555555555555554321 111222233444455555
Q ss_pred CCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCCh--h-cHHHHHHHHHh
Q 003725 522 GRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGF-----------LMRS--E-SCCKLLTNLLI 587 (800)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~--~-~~~~l~~~~~~ 587 (800)
+++++|..+++ ++.+..+ .|++ . ....++..+..
T Consensus 381 e~~~~A~~~l~--------------------------------~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 381 EQLDKAYQFAV--------------------------------NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred ccHHHHHHHHH--------------------------------HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 55555555555 3333111 1121 1 22334555667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNI 667 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 667 (800)
.|+..+|.+.++.+.... +-|......+.+.+...|.+..|+..++.+....+. +..+....+.++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777777777777776654 566667777777777777788777777666655444 566666777777777778887777
Q ss_pred HHHHHHcCCCCCHHHHHH
Q 003725 668 FKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 668 ~~~m~~~g~~pd~~~~~~ 685 (800)
.+.+.+. .|+......
T Consensus 507 ~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 507 TDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHhh--CCCchhHHH
Confidence 7777653 555544433
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=4.7e-14 Score=147.33 Aligned_cols=603 Identities=13% Similarity=0.067 Sum_probs=398.8
Q ss_pred HHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 003725 167 KAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFE 246 (800)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 246 (800)
.....+|++++|..++.++++.+ +.+..+|..|...|-..|+.+++...+--..... +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33445599999999999999986 5678899999999999999999999887665543 446678999999999999999
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCChHHHHHHH
Q 003725 247 EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYT----AVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~ 322 (800)
+|.-.|.++++.. +++...+-.-+..|-+.|+...|.+-|.++.....+.+..-+. .+++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999876 3466666666778889999999999999999975322322222 3455666777779999998
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------------------chHHHHHH
Q 003725 323 LRMKQL-RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIK---------------------------TNYVVSVI 374 (800)
Q Consensus 323 ~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~l 374 (800)
+..... +-.-+...++.++..+.+...++.|......+...... ++.....+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887763 22335567888899999999999999988887762111 11111233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003725 375 LKCLCQMGKTSEAIKKFKEFKSMG--IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRG 452 (800)
Q Consensus 375 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 452 (800)
.-++......+....+...+.+.. +.-+...|.-+..+|...|.+.+|+.+|..+......-+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 444555555555555555566555 444567788899999999999999999999998866667789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 453 KLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK--------KQGVKPNVITHNMIIEGLCTSGRV 524 (800)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~ 524 (800)
.+++|...|...+...+. +...--+|...+.+.|+.++|.+.+..+. ..+..|+..........+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999886432 55566777788899999999999999854 234566666666677778888888
Q ss_pred HHHHHHHHHHHhcc-------------------------CccCHHHHHHHHHccCCHHHHHHH------HHHHHHcCCCC
Q 003725 525 KEARAFFDDDLKEK-------------------------CLENYSAMVDGYCEANHLEEAFQF------FMTLSQRGFLM 573 (800)
Q Consensus 525 ~~a~~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~g~~~~A~~~------~~~~~~~~~~~ 573 (800)
++-..+...++... .......++.+-.+.++......- +......+...
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 77544333111100 000122333333333332221111 11111222222
Q ss_pred Ch--hcHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--
Q 003725 574 RS--ESCCKLLTNLLIEGYNNKAFKLLDTMLKLDA--KPSK---TTYDKVIGALCLAGKIKWAHQVFDFLTRH-GLIP-- 643 (800)
Q Consensus 574 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-- 643 (800)
+. ..+..++.++++.+.+++|..+...+..... .++. ..-...+.+.+..+++..|...+..+... +...
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 22 2456677788999999999999999887632 2222 12234456777899999999999888853 2111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHH
Q 003725 644 -DLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMK 722 (800)
Q Consensus 644 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 722 (800)
-...||...+...+.|+-.-=.+++..+... .|+......++.|.. +...+.+..|.+.+-..-
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~-------------~~~~~s~~~Al~~y~ra~ 767 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHN-------------LFVNASFKHALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechh-------------HhhccchHHHHHHHHHHH
Confidence 3455665666666666655555555554432 333322233333322 234566777887654433
Q ss_pred HCCCCchhhhccCCCCCcchHHHHHHHHHh--cC--------CHHHHHHHHHHHHHCCCC--CCHHHHHHHHccccCCCC
Q 003725 723 EMEISPDVMLGQGLEPDTVCYTVLIARLCY--TN--------NLVDALIVFDEMIDRGLE--PNIVIYKALLCGCPTKKD 790 (800)
Q Consensus 723 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~--~g--------~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~ 790 (800)
...|| ++.+--+++-++.. .+ -.-..+.++.+..+.... -....|| ++.+|...|-
T Consensus 768 --~~~pd---------~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN-igRayh~~gl 835 (895)
T KOG2076|consen 768 --RQNPD---------SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN-IGRAYHQIGL 835 (895)
T ss_pred --HhCCC---------CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHHccc
Confidence 33442 23222233333221 11 123455566555543221 2344444 8899999999
Q ss_pred HHHHHhhhcC
Q 003725 791 VDKYLSLFAE 800 (800)
Q Consensus 791 ~~~A~~~~~~ 800 (800)
+--|..+|++
T Consensus 836 ~~LA~~YYek 845 (895)
T KOG2076|consen 836 VHLAVSYYEK 845 (895)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.2e-11 Score=122.67 Aligned_cols=492 Identities=12% Similarity=0.024 Sum_probs=383.5
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003725 178 ALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNK 257 (800)
Q Consensus 178 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 257 (800)
=.++++..++.- +.++..|. +-....+.+.|.-++....+. ++.+...| -+|.+..-|+.|..++....+
T Consensus 365 K~RVlRKALe~i-P~sv~LWK----aAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEHI-PRSVRLWK----AAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHhC-CchHHHHH----HHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555542 33444443 344556666688888888764 23333433 456677788999999998877
Q ss_pred CCCCcChhcHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003725 258 AGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKW----SENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD 333 (800)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 333 (800)
. ++-+..+|.+-...--.+|+.+....++.+- ...|+..+...|..=...+-..|..-.+..+.......|+.-.
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 5 4557788888888788889988888776654 4468888888888888888889999999999999888876543
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 334 --KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMD 411 (800)
Q Consensus 334 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 411 (800)
..||..-...|.+.+.++-|..+|...++..+.....|......--..|..++...+|+++...-+. ....|.....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ak 592 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAK 592 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHH
Confidence 3578888889999999999999999998876666688888888888899999999999999887544 4566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 412 ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRD 491 (800)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (800)
.+-..|++..|..++....+.+.. +...|-.-+.....+..++.|..+|.+.... .|+...|.--+....-.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 888899999999999999887654 7788888889999999999999999998765 5677778777777777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003725 492 ALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK--EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQR 569 (800)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (800)
|++++++.++. ++.-...|-.+.+.+.+.++++.|.+.|..-++ ..+++.|..+...--+.|.+.+|..++++..-+
T Consensus 670 A~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 670 ALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 99999998886 455577888888899999999999999984333 224555888888888999999999999999988
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 570 GFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYT 649 (800)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 649 (800)
++. +...|...++.-.+.|+.+.|..+..+++..- +.+...|.--|....+.++-.+..+.+.+. ..|+...-
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVll 821 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLL 821 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHH
Confidence 877 78889999999999999999999999988753 556667777777776666655555555443 23777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 003725 650 MLIHGFCKLNCLREACNIFKDMKLRGIKPD-VVLYTILCDAYSKIN 694 (800)
Q Consensus 650 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~ 694 (800)
.+...+....++++|.+.|.+.++. .|| -.+|..+..-....|
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhC
Confidence 8888888899999999999999875 455 456666666666544
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8.8e-14 Score=132.50 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=99.1
Q ss_pred HccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHH--HcCChhHH-HHHHHHHHhCC-------------------CCC
Q 003725 170 CSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLL--KCGEVDMV-LVLYEEMKSVG-------------------FSL 227 (800)
Q Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~m~~~~-------------------~~~ 227 (800)
..+|.+.++.-+|+.|...|...+...-..|+..-+ ...++.-| ++.|-.|.+.| .+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PK 205 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPK 205 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCC
Confidence 345777777777777777776666666555544322 22222111 22333333322 123
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 228 NQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIR 307 (800)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 307 (800)
+..||.+||.++|+-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 445666666666666666666666666655545556666666655433221 1455666666666666666666666
Q ss_pred HHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 308 EFCQNSRLVE----AESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIK 352 (800)
Q Consensus 308 ~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 352 (800)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 6666665543 33455566666666666666666666666555543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.7e-14 Score=136.74 Aligned_cols=474 Identities=14% Similarity=0.085 Sum_probs=285.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcChhcH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 003725 235 VIKALCKLARFEEAFDVLNEMNKAGVTLHGHNY-STIIQGLCENGRLDVGYDLLLKWSENGIPLN----AFAYTAVIREF 309 (800)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~ 309 (800)
|...|..+....+|+..|+-+.+..+-||.... ..+...+.+...+.+|+++++.....-...+ ....+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 444455556667777777766665555554332 2344556667777777777776665411111 22344455556
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-H--------HHHHHHHHHHh
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-Y--------VVSVILKCLCQ 380 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~--------~~~~l~~~~~~ 380 (800)
.+.|++++|..-|+...+. .|+..+-..|+-++...|+-++..+.|.+|+.....++ . .-..++.-..+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7778888888888777764 46776666666666677788888888887765433222 0 01111111111
Q ss_pred cCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003725 381 MGK-----------TSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYI 449 (800)
Q Consensus 381 ~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 449 (800)
... .++++-.--++..--+.|+-. .| .+-+++.++.-.-..+. ...--.-...|.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la--~dlei~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELA--IDLEINKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhh--hhhhhhHHHHHH
Confidence 110 111111111111111111100 00 01112221111100000 000011123467
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 450 LRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGL-AQ-YGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
++|+++.|+++++-+.+..-+.-...-+.|-..+ .+ -.++..|.++-+..+... .-++.....-.......|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 7888888888887776553322222223332222 22 235666766666655432 22333332223334456888888
Q ss_pred HHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003725 528 RAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD 605 (800)
Q Consensus 528 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 605 (800)
.+++++.+... +......+.-.+-..|+.++|+++|-++...- ..+..++..+...|-...+...|++++-+....
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 88888666544 23334444555677888899998887765432 225677788888888899999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 606 AKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 606 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 685 (800)
++.|+.+.+.|...|-+.|+-..|.+++-.--+. +..+..+...|...|....-+++|+.+|++..- +.|+..-|-.
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 4678888999999999999999998877655443 445888888888888999999999999998764 7999999999
Q ss_pred HHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCC
Q 003725 686 LCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNN 755 (800)
Q Consensus 686 ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~ 755 (800)
++.+|.+ ..|++..|..+++.....- | .|..+.--|++.+...|.
T Consensus 665 miasc~r--------------rsgnyqka~d~yk~~hrkf--p---------edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFR--------------RSGNYQKAFDLYKDIHRKF--P---------EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHH--------------hcccHHHHHHHHHHHHHhC--c---------cchHHHHHHHHHhccccc
Confidence 9999987 5788999999998876532 2 277888888888777774
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=5.9e-13 Score=126.97 Aligned_cols=312 Identities=18% Similarity=0.218 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChh-HHHHHHHHHHhCC-----------
Q 003725 194 KFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK--LARFE-EAFDVLNEMNKAG----------- 259 (800)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~-~A~~~~~~~~~~~----------- 259 (800)
+++=|.|+. +...|.++.+.-+|+.|.+.|++.+...-..|++.-+- ..++- .-++.|-.|.+.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 345556555 46788999999999999988877666655555443332 22211 1122333333322
Q ss_pred --------CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003725 260 --------VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVT 331 (800)
Q Consensus 260 --------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 331 (800)
.+....++..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 12345677888888888878888888888777766677777888777664332 226777778777778
Q ss_pred CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC-
Q 003725 332 PDKYVYSALISGYCKCGNIIK----ALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSE-AIKKFKEFKS----MGIF- 400 (800)
Q Consensus 332 p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~~- 400 (800)
||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|. .+|..++..+++.++..+ +..++.++.. ....
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 888888888888888887665 4556677777777777 777777777777666533 3333333321 1111
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003725 401 ---LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQ----IVPD---VANYTTVIDGYILRGKLVDAIGLFKKMREMGHK 470 (800)
Q Consensus 401 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (800)
-|...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 234455666677777777777777666554321 2222 233455666667777777777777777666566
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 471 PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVIT 510 (800)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (800)
|+..+...++++....|.++-.-+++.+++..|..-+...
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6777777777777777777777777777776654333333
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.8e-13 Score=131.22 Aligned_cols=491 Identities=14% Similarity=0.068 Sum_probs=295.3
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHH-HHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHh
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTC-NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLN----QFT 231 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~ 231 (800)
.+..+...|...|....+..+|+..|+-+.+....|+.-.. ..+.+.+.+..++.+|+++|+-....-...+ +..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 34455666677777777777777777776665544444322 2344556666777777777765554311111 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH--------H
Q 003725 232 YDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAY--------T 303 (800)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~ 303 (800)
.+.+...+.+.|.+++|+..|+...+. .||..+--.|+-++..-|+-++..+.|.+|+..-..++..-| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444444556677777777777766554 356555445555555566777777777776653222222111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHhc
Q 003725 304 AVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN--YVVSVILKCLCQM 381 (800)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 381 (800)
.|+.-..+.. .++.|.+.+ ..+-++++-.-.+++..-+.|+ ..+..-+..+-..
T Consensus 357 ~ll~eai~nd-------~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s 412 (840)
T KOG2003|consen 357 NLLNEAIKND-------HLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKAS 412 (840)
T ss_pred HHHHHHHhhH-------HHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHh
Confidence 1111111111 111221110 0112222222222332222333 1111111111111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hh-cCCHHHHHH
Q 003725 382 GKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGY-IL-RGKLVDAIG 459 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~-~g~~~~A~~ 459 (800)
...+-|.+ ... + -..-|.+.|+++.|+++++-..+++-+.-...-+.|-..+ .+ -.++.+|..
T Consensus 413 ~~~~la~d-------------lei-~-ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 413 QHAELAID-------------LEI-N-KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhhhhhhh-------------hhh-h-HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 11111111 111 1 1234678899999999999888764333333333333322 22 335777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--Hhc
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDD--LKE 537 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~ 537 (800)
+-+..+...- -+......-.......|+++.|.+.+++.+...-......| .+.-.+.+.|++++|.+.|-+. +-.
T Consensus 478 yad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 478 YADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 7776654321 13333333333344578999999999999866422222222 2333567889999999998732 223
Q ss_pred cCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 538 KCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVI 617 (800)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 617 (800)
.+......+...|.-..+...|++++.+.... +..|+..++.+...|-+.|+...|.+.+-.--+ -++.+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHH
Confidence 45555777888899999999999999877654 333778899999999999999999987765543 2467888888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGF-CKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINK 695 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~ 695 (800)
.-|....-.++|..+|++..- +.|+..-|..|+..| .+.|++.+|.++|++.-.+ ++-|.....-|+.-|..+|.
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 889999999999999998765 679999998888755 5889999999999998875 67788888888888887664
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.3e-11 Score=116.75 Aligned_cols=438 Identities=11% Similarity=0.026 Sum_probs=317.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 003725 105 NVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQ 184 (800)
Q Consensus 105 ~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 184 (800)
+...|-.....=-.++...+|.++++.++... ..+...|...+..-.+.+.+..|..++++
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-------------------~r~itLWlkYae~Emknk~vNhARNv~dR 132 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-------------------YRNITLWLKYAEFEMKNKQVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-------------------cccchHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 45566666666666888899999999887652 12344677788888888999999999988
Q ss_pred ccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh
Q 003725 185 TDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG 264 (800)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (800)
....=...|. .|-..+.+=-..|++..|.++|+.-.+ ..|+...|.+.|+.=.+-+.++.|..+|+...- +.|++
T Consensus 133 Avt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v 207 (677)
T KOG1915|consen 133 AVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKV 207 (677)
T ss_pred HHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccH
Confidence 7765322232 344444555667999999999999887 579999999999999999999999999998875 35899
Q ss_pred hcHHHHHHHHHhcCChhHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 003725 265 HNYSTIIQGLCENGRLDVGYDLLLKWSEN-G-IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD--KYVYSAL 340 (800)
Q Consensus 265 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l 340 (800)
.+|.-.+.--.+.|....|..+++...+. | -..+...+.+....-.++..++.|.-+|+-.... ++.+ ...|..+
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHH
Confidence 99998888888999999999999988774 2 1122344555555556677888999898887764 2222 4455555
Q ss_pred HHHHHhcCCHHHHHHH--------HHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH---
Q 003725 341 ISGYCKCGNIIKALSL--------HGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVC-YNV--- 408 (800)
Q Consensus 341 i~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~--- 408 (800)
...--+-|+.....+. ++.+...++-.-.+|...++.-...|+.+...+.|++....-++..... |.-
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHH
Confidence 5555556665444332 4555555554447888888888888999999999998887644322211 111
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003725 409 -----IMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGY----ILRGKLVDAIGLFKKMREMGHKPDIKAYNVL 479 (800)
Q Consensus 409 -----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (800)
.+-.-....+++.+.++++...+. ++....||..+--.| .++.++..|.+++...+ |.-|-..+|...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHH
Confidence 111123467888899999888873 444455665554333 46788888988888776 456788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC----HHHHHHHHHccCC
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN----YSAMVDGYCEANH 555 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~l~~~~~~~g~ 555 (800)
|..-.+.+.++.+..++++.++.+ |-+..++......-...|+.+.|..+|+-++.++..+. |.+.|+.-...|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 888888999999999999998876 56677777777777788999999999986666664443 6677777778889
Q ss_pred HHHHHHHHHHHHHcCC
Q 003725 556 LEEAFQFFMTLSQRGF 571 (800)
Q Consensus 556 ~~~A~~~~~~~~~~~~ 571 (800)
+++|..+|+++++...
T Consensus 523 ~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998887754
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.4e-13 Score=130.96 Aligned_cols=413 Identities=14% Similarity=0.096 Sum_probs=263.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC
Q 003725 304 AVIREFCQNSRLVEAESVLLRMKQLRVTPD-KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG 382 (800)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (800)
...+-|.+.|.+++|+++|...++. .|| ++-|.....+|...|+|+++.+-..+.++.++.-..++..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3445567788888888888888875 466 6777778888888888888888777777665554466677777777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHh-C--CCCCCHHHHHHHHHHHHhc
Q 003725 383 KTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF--------NEMEG-R--QIVPDVANYTTVIDGYILR 451 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~-~--~~~~~~~~~~~li~~~~~~ 451 (800)
+.++|+.=. |...+..++....-.-.+.+++ ++-.+ . .+.|+.....+....+...
T Consensus 198 ~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 198 KFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred cHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 887776422 2222222222222222222222 22222 1 1334444333333322211
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCC---CC------HHHHH
Q 003725 452 ------GKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ-YGSVRDALDCLKYMKKQ---GVK---PN------VITHN 512 (800)
Q Consensus 452 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~---~~~---~~------~~~~~ 512 (800)
...+++-..+....+ ..+.. ...+..|...+.+-... ... .| ..++.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred ccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 000111111100000 00000 01122222222221110 000 01 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 003725 513 MIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGY 590 (800)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (800)
.-...+.-.|+.-.|..-|+..+... .+..|-.+..+|...++.++-...|.+....++. ++.+|..-.....-.++
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 22223445788889999999666543 2333888889999999999999999999998877 88899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 591 NNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKD 670 (800)
Q Consensus 591 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 670 (800)
+++|+.-|++.+... +-+...|..+..+..+.+.++++...|++..++ +...+..|+....++...+++++|.+.|+.
T Consensus 410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999999876 456667888888888999999999999999876 444788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHH
Q 003725 671 MKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARL 750 (800)
Q Consensus 671 m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~ 750 (800)
.++ +.|+......-+.-+.+ ..+..++-.+++..|.+++++..+...+ ....|.+|+...
T Consensus 488 ai~--LE~~~~~~~v~~~plV~-------Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-----------ce~A~~tlaq~~ 547 (606)
T KOG0547|consen 488 AIE--LEPREHLIIVNAAPLVH-------KALLVLQWKEDINQAENLLRKAIELDPK-----------CEQAYETLAQFE 547 (606)
T ss_pred HHh--hccccccccccchhhhh-------hhHhhhchhhhHHHHHHHHHHHHccCch-----------HHHHHHHHHHHH
Confidence 987 45552111000000000 0111223458899999999988764433 667899999999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003725 751 CYTNNLVDALIVFDEMID 768 (800)
Q Consensus 751 ~~~g~~~~A~~~~~~~~~ 768 (800)
...|+.++|+++|++...
T Consensus 548 lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998763
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1e-10 Score=113.47 Aligned_cols=386 Identities=10% Similarity=0.042 Sum_probs=208.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 276 ENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALS 355 (800)
Q Consensus 276 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 355 (800)
..|++..|.++|+.+.+- .|+..+|.+.|..-.+-..++.|..+++...- +.|++.+|.-....--+.|+...|..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 344444444444444442 44444455555444444445555555544443 23444444444444444455544544
Q ss_pred HHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-------
Q 003725 356 LHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFL-DQVCYNVIMDALCKLGEVEEAVK------- 424 (800)
Q Consensus 356 ~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~------- 424 (800)
+|+...+.-.... ..+......-.++..++.|.-+|+-....-+.- ....|..+...--+.|+.....+
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 4444433211110 222333333333444455555554444332211 12233333332223333322221
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH--------HHhcCCHHHHH
Q 003725 425 -LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI--KAYNVLARG--------LAQYGSVRDAL 493 (800)
Q Consensus 425 -~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~--------~~~~g~~~~a~ 493 (800)
-++.+++.++ -|-.+|--.+..--..|+.+...++|+..+.. ++|-. ..|...|.. -....+.+.+.
T Consensus 309 ~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1333344332 25666666666666667777777777777654 23311 122222211 12356777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhccCcc--CHHHHHHHHHccCCHHHHHHHHHHHH
Q 003725 494 DCLKYMKKQGVKPNVITHNMIIEGLC----TSGRVKEARAFFDDDLKEKCLE--NYSAMVDGYCEANHLEEAFQFFMTLS 567 (800)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (800)
++++..++. +|....|+.-+--+|+ ++.++..|.+++...+. .++. .+...|..-.+.++++....+|.+.+
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG-KCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777764 4555566655544443 45777778777774333 3332 36666777777788888888888888
Q ss_pred HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003725 568 QRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD-AKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLI 646 (800)
Q Consensus 568 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 646 (800)
+-++. +..+|......-...|+.+.|..+|.-++... .......|.+.|+--...|.+++|..+++++++.. +-..
T Consensus 465 e~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~k 541 (677)
T KOG1915|consen 465 EFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVK 541 (677)
T ss_pred hcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccch
Confidence 77665 66677777777777888888888888877643 22233456666666677889999999999888752 2334
Q ss_pred HHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 003725 647 SYTMLIHGFC-----KLN-----------CLREACNIFKDMK 672 (800)
Q Consensus 647 ~~~~li~~~~-----~~g-----------~~~~A~~~~~~m~ 672 (800)
+|.++...-. +.| ....|..+|++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 6666654332 333 5667777777765
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=5.3e-12 Score=131.42 Aligned_cols=585 Identities=13% Similarity=0.059 Sum_probs=319.0
Q ss_pred CchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHH
Q 003725 139 LNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYE 218 (800)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (800)
..|.+.+++..+...|..|+..+|..+|..||..|+.+.|- +|.-|.-...+.....++.++.+....++.+.+.
T Consensus 5 ~kf~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 5 VKFFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred cccCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----
Confidence 34556678888888899999999999999999999999999 8888888777778889999999999988877665
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCcChhcHHH---------------HHHHHHh
Q 003725 219 EMKSVGFSLNQFTYDIVIKALCKLARFEE---AFDVLNEMN----KAGVTLHGHNYST---------------IIQGLCE 276 (800)
Q Consensus 219 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~~~---------------li~~~~~ 276 (800)
.|-..||..|..+|.+.|++.- ..+.++.+. ..|+- ....+.. .+....-
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 5888999999999999998754 333222222 12221 1111111 1222222
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 277 NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSL 356 (800)
Q Consensus 277 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 356 (800)
.|-++.+++++..+...... . .+..+++-... .....+++........-.|+..+|..+++.-...|+.+.|..+
T Consensus 152 eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHhhCCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 33334444433332221100 0 11111222221 1223333443333322258999999999999999999999999
Q ss_pred HHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 357 HGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIV 435 (800)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (800)
+.+|.+.|++.. .-|-.++-+ .++..-+..+++-|.+.|+.|+..|+...+..+..+|....+....+.- ..
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~----hg 299 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA----HG 299 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh----hh
Confidence 999999998877 333333333 7888888899999999999999999998888887766532221111110 00
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-C
Q 003725 436 PDVANYTTVIDGYILRGKLVD-----AIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQG--VKP-N 507 (800)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~ 507 (800)
.....+..+..+.....+.+. ....+.+..-.|+.....+|..... ...+|..++..++-..+..-- ..+ +
T Consensus 300 ~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 300 FTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcch
Confidence 112222333322111111111 1222222222344433444443333 333677777777777665321 111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH--HHHhcc-CccCHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-------C
Q 003725 508 VITHNMIIEGLCTSGRVKEARAFFD--DDLKEK-CLENYSAMVDGYCEANHLEEAFQFFMTLSQR----GFL-------M 573 (800)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-------~ 573 (800)
...+..++.-|.+.-+..-...++. +.+... +....-.+..... .-+...+++.+..+... ... +
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 3344444444433221111111111 111110 0000001111111 11222222222222111 111 1
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHH
Q 003725 574 RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR--HGLIPDLISYTML 651 (800)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l 651 (800)
-...-+.++..++..-+..++...-+.....-+ ...|..|++-++.....+.|..+.++... ..+..|..-+..+
T Consensus 458 irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 112334455566666555555544444333221 14678888888888889999888887764 3344567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCch
Q 003725 652 IHGFCKLNCLREACNIFKDMKLRGI-KPD-VVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPD 729 (800)
Q Consensus 652 i~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 729 (800)
.+.+.+.+...++..+++++.+.-. .|+ ..++--++++..- .+..+...++++-+...|+..
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~---------------agqqe~Lkkl~d~lvslgl~e- 598 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAP---------------AGQQEKLKKLADILVSLGLSE- 598 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhh---------------ccCHHHHHHHHHHHHHhhhhh-
Confidence 8889999999999999988886422 222 2223333333332 344555555555555544432
Q ss_pred hhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Q 003725 730 VMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLC 783 (800)
Q Consensus 730 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 783 (800)
+ .-++....+.++...|++..+...+. ++|.+.....+.+
T Consensus 599 ---------t----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcr 638 (1088)
T KOG4318|consen 599 ---------T----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCR 638 (1088)
T ss_pred ---------c----ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHH
Confidence 1 12233344555556666655554432 4555544444443
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=6.4e-12 Score=130.86 Aligned_cols=546 Identities=13% Similarity=0.086 Sum_probs=269.8
Q ss_pred HccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 003725 184 QTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH 263 (800)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (800)
.+...|+.|+..+|..++..|+..|+++.|- +|.-|.-+..+.+...|+.++.+..+.++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3444556666666666666666666666666 6666655545555556666666666666655554 455
Q ss_pred hhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 003725 264 GHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMK-QLRVTPDKYVYSALIS 342 (800)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~ 342 (800)
..+|..|..+|...||+.. ++..++ -...+...+...|--..-..++..+. ..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 6666666666666666554 222221 01112222333333333333332221 1122233332 233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM-GKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
.....|-++.+++++..+..........+ +++-+... ..+++-....+...+ .++..+|..++.+-...|+++.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 34445566666666655543322222111 12222222 223333333333332 4788888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH-------
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALD------- 494 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~------- 494 (800)
|..++.+|.++|++.+.+-|..|+-+ .++...+..++.-|.+.|+.|+..|+...+-.+..+|....+..
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg 299 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHG 299 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhh
Confidence 88888888888888888777777766 67777888888888888888888888777766666443221111
Q ss_pred ----HHHHHHH-------------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc------C
Q 003725 495 ----CLKYMKK-------------------------QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK------C 539 (800)
Q Consensus 495 ----~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~ 539 (800)
++..|.. .|+.....+|...+.. .-.|+-++.+.+-....... +
T Consensus 300 ~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 300 FTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcch
Confidence 0001100 0111111111111111 11344444443333111110 1
Q ss_pred ccCHHHHHHHHHccCCHHHHHHHHH--HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC------
Q 003725 540 LENYSAMVDGYCEANHLEEAFQFFM--TLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKL----DAK------ 607 (800)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~------ 607 (800)
+..|..++.-|.+.-+..-...++. +.++... +....-.+...+.. -+...+..-+...... ...
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhh
Confidence 1113333332222111110001100 1111100 00000001111100 0111111111111110 000
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHH
Q 003725 608 -PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRG--IKPDVVLYT 684 (800)
Q Consensus 608 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~ 684 (800)
+-...-+.++-.|+..-+..+++..-+.....-+. ..|..||+.++...+.+.|..+.++..... +..|..-+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 11122345566666666666666555555443222 678888988888899999998888875321 223444455
Q ss_pred HHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHH-CCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003725 685 ILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE-MEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVF 763 (800)
Q Consensus 685 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 763 (800)
.+.+...+ -+....+..+++++++ ....|. ...+.--+.+.....|..+.-.+++
T Consensus 533 ~l~dLL~r---------------~~~l~dl~tiL~e~ks~a~n~~~---------~a~~~f~~lns~a~agqqe~Lkkl~ 588 (1088)
T KOG4318|consen 533 SLQDLLQR---------------LAILYDLSTILYEDKSSAENEPL---------VAIILFPLLNSGAPAGQQEKLKKLA 588 (1088)
T ss_pred HHHHHHHH---------------hHHHHHHHHHHhhhhHHhhCCch---------HHHHHHHHHhhhhhccCHHHHHHHH
Confidence 55555544 3346677778877775 222221 1233444556666677777666776
Q ss_pred HHHHHCCCCCCHHHHHHHHccccCCCCHHHHHhhhc
Q 003725 764 DEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLFA 799 (800)
Q Consensus 764 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 799 (800)
+-+...|+.-+ .-+.......++...|.+.++
T Consensus 589 d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 589 DILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 66665565442 334455667777777777654
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.1e-11 Score=123.05 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIE 516 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 516 (800)
+......-.+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+-.++++. .|-.+.+|.++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 55555566667778888888888888887763 335555555566777888887777777777776 3666778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHh--ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 517 GLCTSGRVKEARAFFDDDLK--EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
.|...|+..+|.++|.+... ..-.+.|-.+...|.-.|+.+.|+..|....+.-.. ....+..+.-
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgm----------- 388 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGM----------- 388 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHH-----------
Confidence 88888888888888885332 223445888888888888888888777665543111 1111222222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 595 FKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
-|.+.++++.|.++|..+....+. |+...+-+.-.....+.+.+|..+|+..+..
T Consensus 389 ------------------------ey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 389 ------------------------EYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred ------------------------HHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 344555555555555555544333 4455555554445555555555555554411
Q ss_pred --CCCC----CHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHH
Q 003725 675 --GIKP----DVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIA 748 (800)
Q Consensus 675 --g~~p----d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~ 748 (800)
.+.+ -..+++.|-.+|.+ .+.+++|...++........ +..++.+++-
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rk---------------l~~~~eAI~~~q~aL~l~~k-----------~~~~~asig~ 497 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRK---------------LNKYEEAIDYYQKALLLSPK-----------DASTHASIGY 497 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHH---------------HhhHHHHHHHHHHHHHcCCC-----------chhHHHHHHH
Confidence 0111 11223333333333 23355555555555543333 8888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccc
Q 003725 749 RLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGC 785 (800)
Q Consensus 749 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 785 (800)
+|...|+++.|++.|++.+ .+.||..+...+++.+
T Consensus 498 iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999999999999999998 7899998888777644
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=3.7e-12 Score=132.55 Aligned_cols=223 Identities=14% Similarity=0.098 Sum_probs=115.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHH
Q 003725 410 MDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI-------KAYNVLARG 482 (800)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~ 482 (800)
...+...|+++.|...++++.+.++. +......+...|.+.|++++|..++..+.+.+..++. .+|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555566666655555554432 4455555555555556666666555555554433111 112222222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHH
Q 003725 483 LAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQF 562 (800)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (800)
.....+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++.++. ....-..++.+.
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~------------ 304 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPR------------ 304 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhh------------
Confidence 22233334444444443322 2334555555555555555555555555533331 111111112222
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003725 563 FMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLI 642 (800)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 642 (800)
+..++.+++++..+...+.. +.|+..+..+...|...|++++|.+.|+.+.+. .
T Consensus 305 -----------------------l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~ 358 (398)
T PRK10747 305 -----------------------LKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--R 358 (398)
T ss_pred -----------------------ccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 23344555555555554443 344555666777777777777777777777763 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 643 PDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 643 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
|+...+..+..++.+.|+.++|.+++++-+.
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666777777777777777777776653
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.3e-10 Score=109.92 Aligned_cols=325 Identities=13% Similarity=0.108 Sum_probs=139.2
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cChhcHHHH
Q 003725 192 WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVT-LHGHNYSTI 270 (800)
Q Consensus 192 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 270 (800)
.|...+-....++.+.|..+.|...|.+....- +-.=..|..|... .-+.+.+ ......+.. .+.-.--.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~----~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEIL----SILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHH----HHHHhcCcccchHHHHHHH
Confidence 344444455556666777777777777665431 2222223222222 1122222 111111111 011111123
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVT--PDKYVYSALISGYCKCG 348 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g 348 (800)
..++-.....+++++-.+.....|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++.. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3444455566666666666666666555555555555555666677777777777665210 134445443322 211
Q ss_pred CHHHHHHHHHHH-HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 349 NIIKALSLHGEM-TSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFN 427 (800)
Q Consensus 349 ~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (800)
+- .+.++.+- ...+---..+...+.+.|.-.++.++|...|++..+.++. ....|+.+..-|....+...|.+-++
T Consensus 312 ~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 11111111 1100000123333444444444444444444444443332 23334444444444444444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 428 EMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPN 507 (800)
Q Consensus 428 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (800)
..++-++. |-..|-.|..+|.-.+...-|+-.|++..+..+ -|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 44443322 444444444444444444444444444443311 134444444444444444444444444444433 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 508 VITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
...+..|...|.+.++.++|...|+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444444444444
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=1.2e-11 Score=129.66 Aligned_cols=85 Identities=18% Similarity=0.031 Sum_probs=63.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAKPSK--TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 665 (800)
.++.+.+.+.++...+.. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 312 ~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 355666677777766553 3344 5667888888999999999999986444445678888888899999999999999
Q ss_pred HHHHHHHH
Q 003725 666 NIFKDMKL 673 (800)
Q Consensus 666 ~~~~~m~~ 673 (800)
+++++.+.
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 99988654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=2.7e-11 Score=126.10 Aligned_cols=281 Identities=12% Similarity=0.025 Sum_probs=135.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHH--HHHHHHHhcCChhHH
Q 003725 207 CGEVDMVLVLYEEMKSVGFSLNQFT-YDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYS--TIIQGLCENGRLDVG 283 (800)
Q Consensus 207 ~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 283 (800)
.|+++.|.+.+....+.. +++.. |........+.|+++.|.+.++++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 467776666665544431 12222 222233335667777777777766653 23332222 234556666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 003725 284 YDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY-------VYSALISGYCKCGNIIKALSL 356 (800)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~ 356 (800)
.+.++++.+.+ |-++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777766664 4456666666677777777777777777776654432221 122222222223333333334
Q ss_pred HHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003725 357 HGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP 436 (800)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 436 (800)
++.+.+.-.........+...+...|+.++|.+.+++..+.. ++... .++.+.+..++.+++.+..+...+..+.
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 333332211111344444444444555555555444444421 12211 1122222334555555555555444322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|..++++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444555555555555555555555443 344444445555555555555555555443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.4e-11 Score=127.39 Aligned_cols=292 Identities=13% Similarity=0.014 Sum_probs=222.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 344 YCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAV 423 (800)
Q Consensus 344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (800)
....|+++.|.+.+.+..+....|...+.....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34689999999999998887666656667778888899999999999999877654433334444578888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH---HHHhcCCHHHHHHHHHHH
Q 003725 424 KLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNV-LAR---GLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~---~~~~~g~~~~a~~~~~~~ 499 (800)
..++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+.. -.. .....+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999988644 6788889999999999999999999999988754 3333321 112 223333444444555555
Q ss_pred HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC----HHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 003725 500 KKQGV---KPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN----YSAMVDGYCEANHLEEAFQFFMTLSQRGFL 572 (800)
Q Consensus 500 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (800)
.+... +.+...+..+...+...|+.++|.+.+++.++...... .....-.....++.+.+.+.+++..+..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 55421 23788888999999999999999999997776432222 122222334567889999999888877654
Q ss_pred CCh--hcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 573 MRS--ESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 573 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
++ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 667789999999999999999999644444578988899999999999999999999998654
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=6.9e-11 Score=115.27 Aligned_cols=221 Identities=13% Similarity=0.032 Sum_probs=165.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 448 YILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
+.-.|+.-.|...|+..+.....++. .|--+...|....+.++....|.+..+.+ +.++.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44567888888888888877544333 26666677888888888888888888876 55677787778888888888899
Q ss_pred HHHHHHHHhccC--ccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003725 528 RAFFDDDLKEKC--LENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD 605 (800)
Q Consensus 528 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 605 (800)
..-|++.+.-.. .-.|-.+.-+..+.++++++...|++..++-+. -+..++.....+...++++.|.+.|+..++..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888885444332 222555555566788889999999888887544 67788888899999999999999999888763
Q ss_pred CC-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 606 AK-------PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 606 ~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.. +.+.+...++-.- -.+++..|..++.++.+.++. ....|.+|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 1222222222222 348999999999999998777 667899999999999999999999999764
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4e-10 Score=112.34 Aligned_cols=506 Identities=13% Similarity=0.037 Sum_probs=280.6
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 003725 158 FYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIK 237 (800)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 237 (800)
+..-+..+++-+..+.++..|.-+-++....+ .++..--.+++++.-.|+++.|..+...-.-. ..|.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 33445666666667777777777777766554 33444455777777788887777766554321 346667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003725 238 ALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVE 317 (800)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 317 (800)
.+.+..++++|..++..... .-+...|-.-=. ...-..+.+.+.. +.......+-.-...|......++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~~~~------~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAGEDL------MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCcccccc------cccchhceeeeeeehhhhhccHHH
Confidence 77788888888887763210 000000000000 0000000000000 000011111111223333444555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ch-HHHHHHHHHH-HhcCCHHHHHHHH
Q 003725 318 AESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIK----TN-YVVSVILKCL-CQMGKTSEAIKKF 391 (800)
Q Consensus 318 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~-~~~~~l~~~~-~~~g~~~~a~~~~ 391 (800)
|...|.+.... |...+..+...-.. ..-.+.+.++.+...... .+ .....+.... ++.-+. +....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccC
Confidence 55555555432 33333322211110 011111111111111100 00 0000000000 000000 000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 392 KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471 (800)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (800)
.+..-.+..-+......-.+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.- +.
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CC
Confidence 000001122234444444555666677777777777776653 2344455555566777777666666666666542 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCccCHHHHHHH
Q 003725 472 DIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK--EKCLENYSAMVDG 549 (800)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 549 (800)
...+|-++.--|...|+..+|.++|.+....+ +.-...|..+...|.-.|..++|...+..+.+ .++.-.+..+.--
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 45667777777777777777777777665443 12234566666777777777777777663333 2333334445556
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhc
Q 003725 550 YCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKL----D--AKPSKTTYDKVIGALCLA 623 (800)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~ 623 (800)
|.+.+...-|.+.|.+.....+. |+...+.+.-.....+.+.+|..+|+..+.. + ..--..+++.|+.+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 67777777777777777665543 5666666666666677777887777776622 1 011344688999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 624 GKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
+.+++|+..+++.+...+. +..++.++.-.|...|+++.|.+.|.+.+- +.||..+...++..+..
T Consensus 469 ~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999999999987666 999999999999999999999999999984 79999888877776554
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.4e-11 Score=111.24 Aligned_cols=285 Identities=13% Similarity=0.116 Sum_probs=157.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh------hcHHHHHHHHHhcCChh
Q 003725 208 GEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG------HNYSTIIQGLCENGRLD 281 (800)
Q Consensus 208 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~ 281 (800)
++.++|...|-+|.+.. +-+..+.-+|.+.|-+.|..+.|+++.+.+.++ ||. .....|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44555555555555421 122233344555555555555555555555442 221 12333444455556666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 003725 282 VGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
.|.++|..+.+.+ .--..+...|+..|-...+|++|+++-+++.+.+..+.. ..|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 6666666555543 223345555666666666666666666666655433322 12444455555566677777777
Q ss_pred HHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003725 358 GEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPD 437 (800)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 437 (800)
.+..+.+.+...+-..+.+.....|++..|++.++...+.++..-..+...|..+|...|+.++....+..+.+... .
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 77666655555555566666667777777777777776666555555666777777777777777777777766532 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 003725 438 VANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ---YGSVRDALDCLKYMKK 501 (800)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 501 (800)
...-..+........-.+.|...+.+-+.. +|+...+..++..... .|...+.+..++.|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 223333333333333445555555544443 5777777777765543 2344555555555553
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=4.1e-14 Score=140.79 Aligned_cols=257 Identities=17% Similarity=0.167 Sum_probs=55.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCC
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVG-FSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGR 279 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 279 (800)
...+.+.|++++|++++++..... .+.|...|..+.......+++++|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553322211 1122222233333333445555555555555443321 33334444443 34455
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 280 LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLR-VTPDKYVYSALISGYCKCGNIIKALSLHG 358 (800)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (800)
+++|.++++...+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555544443332 1233344444444555555555555555544321 12344444444455555555555555555
Q ss_pred HHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003725 359 EMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDV 438 (800)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 438 (800)
+..+..+....+...++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.++++....+.. |.
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~ 248 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DP 248 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--H
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cc
Confidence 5544433333333333333333444443333333333222 112233334444444444444444444444432211 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 439 ANYTTVIDGYILRGKLVDAIGLFKK 463 (800)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~ 463 (800)
.....+..++...|+.++|..+..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4444444444444444444444433
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=5.2e-08 Score=98.78 Aligned_cols=328 Identities=10% Similarity=0.017 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-----CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H
Q 003725 333 DKYVYSALISGYCKCGNIIKALSLHGEMTSI-GI-----KTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLD---Q 403 (800)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~ 403 (800)
++..|..-+.. ..|+..+-...+.+.... ++ .|...|..+.+.|-..|+++.|..+|++..+-...-- .
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 44444443332 344555555555555432 11 1124555566666666666666666666555433211 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 404 VCYNVIMDALCKLGEVEEAVKLFNEMEGR-----------QIVP------DVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
.+|.....+-.+..+++.|+++++....- +.++ +...|...++.--..|-++....+|+.+++
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444445555555666666665554321 0011 233445555555556777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhccCccC
Q 003725 467 MGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNV-ITHNMIIEGLCT---SGRVKEARAFFDDDLKEKCLEN 542 (800)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 542 (800)
..+. ++.........+-.+.-++++.+++++=+..--.|+. ..|+..+.-+.+ ..+++.|..+|++.+. .+++.
T Consensus 506 Lria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 506 LRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 6543 2222222222334455567777777654444223332 233333333322 2456777777776555 33332
Q ss_pred -HHHHHHHH----HccCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---H
Q 003725 543 -YSAMVDGY----CEANHLEEAFQFFMTLSQRGFLM-RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTT---Y 613 (800)
Q Consensus 543 -~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~ 613 (800)
-..+.-.| -+.|....|++++++....-... ....|+..+.-....=-+..-..+|++.++. -|+... .
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mc 661 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHH
Confidence 22222222 24466777777777754432111 1123444444333333344455667776665 244332 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 614 DKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYTMLIHGFCKLNCLREACN 666 (800)
Q Consensus 614 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~ 666 (800)
......-++.|.++.|+.++....+ .++..+...|.+.=..-.+.|+-+...+
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 3344556788999999999988776 4566678889888887889999443333
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.1e-09 Score=106.35 Aligned_cols=290 Identities=14% Similarity=0.075 Sum_probs=173.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 003725 236 IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGI--PLNAFAYTAVIREFCQNS 313 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 313 (800)
..++-.....+++.+-.+.....|+..+...-+....+.....|+|+|..+|+++.+.+. -.|..+|+.++-.--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 344445556666666666666666655555555555555566677777777777766531 123455555543322211
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 314 RLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 314 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
+ +.++.+-...=-+--+.|...+.+-|+-.++.++|...|+...+.++....+|+.+..-|....+...|++.++.
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 111111111000123345556666666667777777777777776666667777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 394 FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473 (800)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 473 (800)
..+..+. |-..|-.|..+|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|......|-. +.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 7665543 6666677777777777777777777776665332 6677777777777777777777777777665422 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQ----G-VKP-NVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
..+..|.+.+-+.++.++|...+.+-++. | +.| .......|...+.+.+++++|..+..
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 66777777777777777777766665542 2 122 12223334555666777777766555
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=2.3e-09 Score=110.96 Aligned_cols=489 Identities=10% Similarity=0.004 Sum_probs=292.1
Q ss_pred HHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHH---HHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 003725 168 AYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQ---LLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLAR 244 (800)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 244 (800)
.+...+..++++.-+......+...+..++-.+-.. |...|+.+++ ++-......+-|....+.+++...
T Consensus 236 Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm----- 308 (799)
T KOG4162|consen 236 LWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM----- 308 (799)
T ss_pred HhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH-----
Confidence 344556777777777777766666555555444332 3344555555 222222211222222222211111
Q ss_pred hhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 245 FEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
-.+.++....+.-+...|..+.-++...|+++.+-+.|++....- .-....|+.+.-.+...|.-..|..+++.
T Consensus 309 -----~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 309 -----LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred -----HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 122233333345577778888888888888888888888877642 23456778888888888888888888887
Q ss_pred HHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHC--C---CCchHHHHHHHHHHHhc-----------CCHHH
Q 003725 325 MKQLRVTPDKYVYSALI-SGYC-KCGNIIKALSLHGEMTSI--G---IKTNYVVSVILKCLCQM-----------GKTSE 386 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~-----------g~~~~ 386 (800)
-....-.|+..+--.++ ..|. +-+..++++++-.+.... + .-+...+..+.-+|... ....+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 76553334333333333 3332 346677777766666552 1 11223333333333321 12445
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 387 AIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+++.+++..+.+..-....|. +.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+....
T Consensus 463 slqale~av~~d~~dp~~if~-lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFY-LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 677777777665442222222 3334667778888888888888876566888888888888888888888888887765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHH
Q 003725 467 MGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQ---------------------G-------VKPNVITHNMIIEGL 518 (800)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~ 518 (800)
.-.. |......-+..-..-++.++++.....+... | ......++..+..-.
T Consensus 542 E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 542 EFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred Hhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 3110 1111111111112234444444443333211 0 000111222111111
Q ss_pred HhcCCHHHHHHHHHHHHhccCcc--------CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 003725 519 CTSGRVKEARAFFDDDLKEKCLE--------NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGY 590 (800)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (800)
...+........+...-....+. .|......+.+.+..++|...+.+.....+. ....|......+...|.
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHh
Confidence 10000000000000000001111 1667778888999999999888888776533 56677777788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 591 NNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQ--VFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIF 668 (800)
Q Consensus 591 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 668 (800)
.++|.+.|...+..+ +.++.+..++..++...|+..-|.. ++..+.+.++. +...|-.+...+-+.|+.++|.+.|
T Consensus 700 ~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHH
Confidence 999999999998876 4456678899999999999888888 99999998887 9999999999999999999999999
Q ss_pred HHHHHc
Q 003725 669 KDMKLR 674 (800)
Q Consensus 669 ~~m~~~ 674 (800)
....+.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 988763
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1e-13 Score=137.91 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=80.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 234 IVIKALCKLARFEEAFDVLNEMNKAG-VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQN 312 (800)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 312 (800)
.+...+.+.|++++|+++++...... ...+...|..+.......++++.|.+.++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45667777888888888885544332 23344555556666667778888888888877764 2255566666666 577
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ch-HHHHHHHHHHHhcCCHHHHHHH
Q 003725 313 SRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIK-TN-YVVSVILKCLCQMGKTSEAIKK 390 (800)
Q Consensus 313 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~ 390 (800)
+++++|.++++..-+. .++...+..++..+...++++++.++++.+...... .+ ..+......+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7778887777665543 245566666777777777777777777776643322 22 4555666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003725 391 FKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHK 470 (800)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (800)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++..+...
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 6666665443 45555666666666666666666666655442 22444555666666666666666666666655432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 471 PDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
.|......+..++...|+.++|..+..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 255556666666666666666666655543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=5.8e-11 Score=109.75 Aligned_cols=272 Identities=13% Similarity=0.091 Sum_probs=200.3
Q ss_pred cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChHHH
Q 003725 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG-IPL--NAFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A 318 (800)
.++.++|+++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++.+.+.++- .+- ...+...|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578899999999998854 2355667788899999999999999999988752 111 123456677888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-----YVVSVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+. ..+..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988754 23455677888999999999999999998888776654 4556666667777888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 394 FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473 (800)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 473 (800)
..+.+.. .+..--.+.+.+...|+++.|++.++.+.+.++.--..+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8776544 2333345667788888888888888888887655445667778888888888888888888887763 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCT 520 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (800)
..-..+........-.+.|..++.+-+.+ +|+...+..++..-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 33444444444455566666666666555 6888888888876544
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.1e-11 Score=125.89 Aligned_cols=286 Identities=15% Similarity=0.120 Sum_probs=186.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcChhcHHHHHHHHHhcCChhHHHH-
Q 003725 209 EVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAG--VTLHGHNYSTIIQGLCENGRLDVGYD- 285 (800)
Q Consensus 209 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~- 285 (800)
+..+|...|..+... +..+......+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777775443 22333455566777777777777777777776642 12245566666554322 11222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 286 LLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSLHGEMTSIG 364 (800)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (800)
+-+.+.+. -+..+.+|.++..+|.-.++.+.|++.|++..+. .| ...+|+.+.+-+.....+|+|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22333333 2456677777777777777778888777777764 34 56777777777777777777777777776655
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 365 IKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTV 444 (800)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 444 (800)
+..-.+|.-+...|.+.++.+.|.-.|+++.+.++. +.+....+...+-+.|+.|+|+++++++...+.. |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 544477777777777777777777777777766554 4555566666777777777777777777766544 44444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 445 IDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVK 505 (800)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 505 (800)
+..+...+++++|+..++++.+.-+ -+...|..+...|.+.|+.+.|+.-|..+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5666667777777777777776522 24556667777777777777777777777765433
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.2e-08 Score=104.92 Aligned_cols=536 Identities=13% Similarity=0.126 Sum_probs=290.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHH
Q 003725 197 CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD----IVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQ 272 (800)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 272 (800)
+-.+.+.+.+.|-...|++.+.++... +..+..-+ -.+..|.-.-.++++.+.+..|...++..|..+...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566777888888888888877766431 11111100 112234445567888888888888888888888777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------------HhCC
Q 003725 273 GLCENGRLDVGYDLLLKWSEN-----------GIPLNAFAYTAVIREFCQNSRLVEAESVLLRM------------KQLR 329 (800)
Q Consensus 273 ~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~ 329 (800)
-|+..=-.+...++|+..... ++..|+.+....|.+.|+.|++.+.+++.++- ++..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 777766667777777766542 24566777778889999999998888776542 1111
Q ss_pred ---------------CCCCHHHHH------HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHH------------HHH
Q 003725 330 ---------------VTPDKYVYS------ALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSV------------ILK 376 (800)
Q Consensus 330 ---------------~~p~~~~~~------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------l~~ 376 (800)
..+|.+.|. ..|..|...=++.+.-.+...+...+...+.+-+. +..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 111221110 11222332222222222222222222222211122 222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHH---HHHH------HHhCCC------------
Q 003725 377 CLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGE-VEEAVK---LFNE------MEGRQI------------ 434 (800)
Q Consensus 377 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~------~~~~~~------------ 434 (800)
-.-+.++..-....++.....|.. |..++|+|...|...++ ++.-++ .++. ..++++
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 223444455555566666677776 78888998888887664 322111 1111 111110
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 435 -------VPDVANYTTVIDGYILRGKLVDAI-----------GLFKKMREMGH--KPDIKAYNVLARGLAQYGSVRDALD 494 (800)
Q Consensus 435 -------~~~~~~~~~li~~~~~~g~~~~A~-----------~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (800)
.-....|......+.+..+.+-=. .+.++..+.++ ..|+...+.-+.+++..+-..+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 001122333333333443332211 22333333322 1255556666777888888888888
Q ss_pred HHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcC--
Q 003725 495 CLKYMKKQG--VKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRG-- 570 (800)
Q Consensus 495 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 570 (800)
+++++.-.. +..+...-+.|+-...+ .+.....++.+ .+..-+.+ .+.......+-+++|..+|++....+
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~-rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYIN-RLDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHH-HhccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 888776322 11122222333322222 23333444444 22222111 22333444455555655555431110
Q ss_pred -------------------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 571 -------------------FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQ 631 (800)
Q Consensus 571 -------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 631 (800)
-.-.+..|+.+..+-.+.|.+.+|++-|-+. .|+..|.-++....+.|.+++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 0113455666666666666666666655432 355566667777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhH
Q 003725 632 VFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEV 711 (800)
Q Consensus 632 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 711 (800)
++..++++.-.|.+. +.||-+|++.++..+-.+++ .-|++.....+-+-|.. ++.+
T Consensus 1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~---------------~~~y 1210 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFE---------------EKMY 1210 (1666)
T ss_pred HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhh---------------hhhh
Confidence 766666554444443 35666667766666544332 24565555555555544 4556
Q ss_pred HHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccCCCCH
Q 003725 712 VDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDV 791 (800)
Q Consensus 712 ~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 791 (800)
+.|.-++. +...|.-|...+...|.++.|.+.-+++- +..||..+--+|...+.+
T Consensus 1211 ~aAkl~y~-------------------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1211 EAAKLLYS-------------------NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHHHHH-------------------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhh
Confidence 67776665 55668888888999999999988766653 566887777777777766
Q ss_pred HHHH
Q 003725 792 DKYL 795 (800)
Q Consensus 792 ~~A~ 795 (800)
..|.
T Consensus 1266 rlAQ 1269 (1666)
T KOG0985|consen 1266 RLAQ 1269 (1666)
T ss_pred hHHH
Confidence 6653
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=8.8e-10 Score=103.04 Aligned_cols=405 Identities=11% Similarity=0.059 Sum_probs=229.2
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
+.-+...+++..|+.+++--...+......+-..+...+...|++++|+..+.-+.+.. .++...+..+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44456668899999988876655433333445567778899999999999999887654 46666666676666678999
Q ss_pred hHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 246 EEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRM 325 (800)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (800)
.+|..+-+... .++-....|.....+.|+-++-..+.+.+... ..--.+|.......-++.+|++++..+
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988866532 24445556666677888888877777766553 233344555555566789999999998
Q ss_pred HhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 326 KQLRVTPDKYVYSA-LISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQV 404 (800)
Q Consensus 326 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 404 (800)
...+ |+-...+. +.-+|.+..-++-+.++++-....-+..+.+.+..+....+.=.-..|..-.+.+...+-..
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 8642 44444443 34567788888888888888777654444444444443333323333333344444332211
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003725 405 CYNVIMDALCKL-----GEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVL 479 (800)
Q Consensus 405 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (800)
| -.+.-.++. ++-+.|++++-.+.+. .| ..--.|+-.|.+++++.+|..+.+++.-. .|-......+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv 324 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV 324 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHH
Confidence 1 112222322 2346777777766654 22 23345666788888888888887766421 2333322222
Q ss_pred HHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcc---CccCHHHHHH
Q 003725 480 ARGLAQYG-------SVRDALDCLKYMKKQGVKPNVIT-HNMIIEGLCTSGRVKEARAFFDDDLKEK---CLENYSAMVD 548 (800)
Q Consensus 480 ~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~l~~ 548 (800)
. +...| ....|.+.|...-..+..-|... -.++..++.-.-++++...+++ .++.- +..--..+.+
T Consensus 325 v--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln-Si~sYF~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 325 V--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN-SIESYFTNDDDFNLNLAQ 401 (557)
T ss_pred H--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcchhhhHHHH
Confidence 2 22222 34455555555544443333211 1233344444455666666555 33321 1111223455
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 003725 549 GYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKL 597 (800)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 597 (800)
+++..|.+.+|.++|-++....+.-+......+.++|...+.++-|.++
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 5666666666666665554433332222223333444455555544443
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.6e-11 Score=124.83 Aligned_cols=287 Identities=13% Similarity=0.092 Sum_probs=229.5
Q ss_pred ChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhHHHHH
Q 003725 174 MFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGF--SLNQFTYDIVIKALCKLARFEEAFDV 251 (800)
Q Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 251 (800)
+.++|+..|..+...- .-..+....+..+|...+++++|.++|+.+.+... ..+..+|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5678999999955543 23346777889999999999999999999986531 13677888887766442 22222
Q ss_pred H-HHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003725 252 L-NEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRV 330 (800)
Q Consensus 252 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 330 (800)
+ +.+.+.. +..+.+|..+..+|.-+++.+.|++.|++..+.+ +-...+|+.+..-+.....++.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 3333332 3467899999999999999999999999999975 447789999999999999999999999998863
Q ss_pred CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 331 TPDKY---VYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYN 407 (800)
Q Consensus 331 ~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (800)
|.. .|-.|.-.|.+.++++.|.-.|++..+.++........+...+.+.|+.++|+.+++++...... |+..--
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 444 45556788999999999999999999998888899999999999999999999999999988766 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 408 VIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473 (800)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 473 (800)
.-+..+...+++++|+..++++++.- +-+...|..+...|.+.|+.+.|+.-|.-+.+..+++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 45666777899999999999998862 225677888889999999999999999998887655443
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=3.7e-10 Score=108.05 Aligned_cols=291 Identities=15% Similarity=0.090 Sum_probs=162.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (800)
.|+|.+|.++..+-.+.+..|...+.....+.-+.|+.+.+-.++.+..+....++...+-+........|++..|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555555555544444455555555555555555555555554433334444445555555556666666555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD-------IKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
+.+.+.+.. ..........+|.+.|++.....++.++.+.|.-.+ ..+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555554433 445555555666666666666666666655554332 234555555555555555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 003725 500 KKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCC 579 (800)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (800)
.+. .+.++....+++.-+..+|+.++|.++..+.++.. ..+. .
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--------------------------------~D~~----L 298 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--------------------------------WDPR----L 298 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------------------------------cChh----H
Confidence 433 24445555555666666666666666666444433 2211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 659 (800)
...-.+..-++...-++..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|
T Consensus 299 ~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 299 CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLG 375 (400)
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcC
Confidence 11112223344444444444444332 34446677788888888888888888886665 3567888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCC
Q 003725 660 CLREACNIFKDMKLRGIKP 678 (800)
Q Consensus 660 ~~~~A~~~~~~m~~~g~~p 678 (800)
+..+|.+.+++.+..-..|
T Consensus 376 ~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 376 EPEEAEQVRREALLLTRQP 394 (400)
T ss_pred ChHHHHHHHHHHHHHhcCC
Confidence 8888888877766433333
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=5.1e-09 Score=98.04 Aligned_cols=452 Identities=11% Similarity=0.039 Sum_probs=259.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCCh
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRL 280 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 280 (800)
+.-+....++..|..+++--...+-+-...+-..+..++...|++++|...|..+.+.. .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44566677888888888766544322222233334455668899999999998887754 56777777787777788888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 281 DVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
.+|..+.....+ ++-.-..+.....+.++-++-..+.+.+.. ...--.+|.......-.+++|++++...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888877654333 344444555666667776666665555543 1223334455544555788999999988
Q ss_pred HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 361 TSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN 440 (800)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (800)
...+...-..-..+.-+|.+..-++-+.++++-....-+. ++..-|.......+.=+-..|++-.+++...+-. .
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~--- 252 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E--- 252 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---
Confidence 8765443333344556777888888888887776654322 3444444443333332223344444444332111 0
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 441 YTTVIDGYILR-----GKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMII 515 (800)
Q Consensus 441 ~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (800)
| ..+.-+++. ..-+.|++++-.+.+. -| .+-..|+-.+.+.++.++|..+.+++. |.++.-|..-.
T Consensus 253 ~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 253 Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 1 122223332 2346677776666543 22 233345556778888888888777653 22222222111
Q ss_pred HHHHhc-------CCHHHHHHHHHHHHhcc-----CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 003725 516 EGLCTS-------GRVKEARAFFDDDLKEK-----CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLT 583 (800)
Q Consensus 516 ~~~~~~-------g~~~~a~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 583 (800)
-.+... ..+.-|..+|. ...+. .++.-..+...+.-..++++++-.+..+..- +.-|......+..
T Consensus 324 vv~aalGQe~gSreHlKiAqqffq-lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQ-LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQ 401 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHH-HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHH
Confidence 122222 23455666666 44322 2333566666666666777777666665543 2334445556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLIS-YTMLIHGFCKLNCLR 662 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~ 662 (800)
+.+..|++.+|.++|-++....++.+..-...|.++|.+.|.++.|++++-.+- ...+..+ ...+.+.|.+.+.+-
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887776554433333333455667778888877766554332 1122222 233445566777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH
Q 003725 663 EACNIFKDMKLRGIKPDVVLYT 684 (800)
Q Consensus 663 ~A~~~~~~m~~~g~~pd~~~~~ 684 (800)
-|.+.|+.+.. ..|+...|.
T Consensus 479 yaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 479 YAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHhhhHHHc--cCCCccccC
Confidence 77777776654 356655553
No 61
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.3e-07 Score=98.68 Aligned_cols=623 Identities=12% Similarity=0.091 Sum_probs=355.9
Q ss_pred ChHHHHHHHHhc-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCC-CchHHHHHHHH
Q 003725 72 STSEVVNKLDSF-RKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMND-LNFEVIDLFEA 149 (800)
Q Consensus 72 ~~~~v~~~l~~~-~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~ 149 (800)
.+++++..|... +-+|+.|++|...+.+.. +....++.+..++......+.+-+.+.+++..+.+ .+.--..+++-
T Consensus 509 yTPdymflLq~l~r~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~ 586 (1666)
T KOG0985|consen 509 YTPDYMFLLQQLKRSSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEM 586 (1666)
T ss_pred CCccHHHHHHHHHccChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHH
Confidence 455565555443 358999999998887542 24455677888888777788888888887766332 12222223322
Q ss_pred -----------HhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHH----HHHHHHHHcCChhHHH
Q 003725 150 -----------LSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCN----FFMNQLLKCGEVDMVL 214 (800)
Q Consensus 150 -----------~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~ 214 (800)
+-..+.. +..-+..+...|-++|-+++|++.|..+.... .....-+ --+..|.-.-.++.+.
T Consensus 587 NL~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIK--R~vVhth~L~pEwLv~yFg~lsve~s~ 663 (1666)
T KOG0985|consen 587 NLVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIK--RVVVHTHLLNPEWLVNYFGSLSVEDSL 663 (1666)
T ss_pred HhccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHH--HHHHHhccCCHHHHHHHHHhcCHHHHH
Confidence 2111111 11226678889999999999998887655321 1111111 1123445555778888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----------CCCcChhcHHHHHHHHHhcCChhHH
Q 003725 215 VLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA-----------GVTLHGHNYSTIIQGLCENGRLDVG 283 (800)
Q Consensus 215 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a 283 (800)
+.+..|....+..|..+..-+..-|+..=..+..+++|+..... ++.-|+.+.--.|.+.|+.|++.+.
T Consensus 664 eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEv 743 (1666)
T KOG0985|consen 664 ECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEV 743 (1666)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHH
Confidence 88888887777777777777777777666666777777765432 2455666777788888888888877
Q ss_pred HHHHHHH------------HhC---------------CCCCCHHHHH------HHHHHH---------------------
Q 003725 284 YDLLLKW------------SEN---------------GIPLNAFAYT------AVIREF--------------------- 309 (800)
Q Consensus 284 ~~~~~~~------------~~~---------------~~~~~~~~~~------~li~~~--------------------- 309 (800)
.++.++- ++. |+.++...|. ..|..|
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC 823 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC 823 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC
Confidence 6653321 111 1111111110 011111
Q ss_pred -------------------------HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHH--------
Q 003725 310 -------------------------CQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN-IIKALS-------- 355 (800)
Q Consensus 310 -------------------------~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~-------- 355 (800)
-+.+++.--...++...+.|+. |..++++|...|...++ ++.-++
T Consensus 824 ~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~ 902 (1666)
T KOG0985|consen 824 SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSK 902 (1666)
T ss_pred cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhh
Confidence 1222333333455555666754 88899999888876654 222211
Q ss_pred HHHHH-HHCCCC--------------------chHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHCCC--CC
Q 003725 356 LHGEM-TSIGIK--------------------TNYVVSVILKCLCQMGKTSEAI-----------KKFKEFKSMGI--FL 401 (800)
Q Consensus 356 ~~~~~-~~~~~~--------------------~~~~~~~l~~~~~~~g~~~~a~-----------~~~~~~~~~~~--~~ 401 (800)
+..+. .++++. .+..|....+.+....+.+--. .+.++....++ ..
T Consensus 903 vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~ 982 (1666)
T KOG0985|consen 903 VVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQ 982 (1666)
T ss_pred HHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccC
Confidence 11111 111110 1134445555555555544322 23344444433 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------
Q 003725 402 DQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQI--VPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGH---------- 469 (800)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------- 469 (800)
|+...+..+.++...+-..+-.++++++.-.+. .-+...-|.|+-...+. +.....++.+++-.-..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 555666778888888888999999988864321 11122223333333322 22333333333322110
Q ss_pred -------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 470 -------------KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK 536 (800)
Q Consensus 470 -------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (800)
..+..+.+.|+. .-+..+.|.++-++. ..+.+|+.+..+-...|.+.+|++.| ++
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSy---ik 1129 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESY---IK 1129 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHH---Hh
Confidence 112333333332 123344443333322 24456777777777777777776654 34
Q ss_pred ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 537 EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKV 616 (800)
Q Consensus 537 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 616 (800)
..++.+|...++...+.|.+++-.+.+....++...|. .-..++-+|++.++..+-.+++. -|+..-...+
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQV 1200 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHH
Confidence 55666788888888888888887777766666554433 33466777777777665544433 4666667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCC
Q 003725 617 IGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKR 696 (800)
Q Consensus 617 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~ 696 (800)
.+-|...|.++.|.-++. ++..|..|...+...|.+..|...-++. .+..||.-+-.+|...+.
T Consensus 1201 Gdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E- 1264 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE- 1264 (1666)
T ss_pred hHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh-
Confidence 777888888887777665 4445777888888888888887766654 256788888888876221
Q ss_pred CCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 697 GSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 697 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
+.-| .|-...+.. ...-..-|+..|...|.++|-+.+++..+
T Consensus 1265 --------------FrlA-----QiCGL~iiv----------hadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1265 --------------FRLA-----QICGLNIIV----------HADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred --------------hhHH-----HhcCceEEE----------ehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 1111 111111111 33445567777778888888887777665
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=8.8e-10 Score=105.54 Aligned_cols=284 Identities=12% Similarity=0.042 Sum_probs=157.2
Q ss_pred cCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 003725 172 ERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDV 251 (800)
Q Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 251 (800)
.|+|..|.+...+..+.+..| ...|..-+.+--..|+.+.+-.++.+..+..-.++...+-...+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766655332 3344455556666777777777777776642234555566666667777777777777
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 252 LNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA-------FAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
++++.+.+ +.+........+.|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 335666777777777777777777777777776644333 2455555554444444443344444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 325 MKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQV 404 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 404 (800)
.... ...++..-.+++.-+...|+.++|.++.++..+.+.++. -...-.+.+.++.+.-++..++..+..+. ++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 4322 223444455556666666666666666666665555444 11122233344444444444443333222 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
.+.+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|..++++.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4444555555555555555555544433 344555555555555555555555544444
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=4.8e-08 Score=101.49 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVV-LYTILCDAY 690 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~ 690 (800)
.|......+.+.++.++|...+.++....+. ....|......+...|+.++|.+.|...+. +.|+.+ ...++...+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 4556677788999999999999888875433 667777777888999999999999999986 678755 556666777
Q ss_pred hccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 691 SKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
...|. ....+..-++.++.+.+.. +...|-.++..+-+.|+.++|.+.|+-..+
T Consensus 729 le~G~-------------~~la~~~~~L~dalr~dp~-----------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 729 LELGS-------------PRLAEKRSLLSDALRLDPL-----------NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhCC-------------cchHHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 66542 2344444588888876554 999999999999999999999999998875
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=3e-08 Score=100.89 Aligned_cols=422 Identities=14% Similarity=0.115 Sum_probs=195.6
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
+++...+++.+.+++. ..-...+.....-.++..|+-++|..........+ .-+.+.|..+.-.+....++++|.+.|
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4444444444444442 12223333333333444444444444444444332 223344444444444444455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 003725 323 LRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMG-IFL 401 (800)
Q Consensus 323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 401 (800)
......+ +.|...+.-+.-.-+..++++.....-....+..+.....|..++.++.-.|+...|..+++...+.. ..|
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 5544432 12333344333334444444444444444444332222444444444444455555555554444332 122
Q ss_pred CHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003725 402 DQVCYNVIM------DALCKLGEVEEAVKLFNEMEGRQIVPDV-ANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIK 474 (800)
Q Consensus 402 ~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 474 (800)
+...|.... ....+.|..++|.+.+..-... +. |. ..-.+-...+.+.+++++|..++..++.. .||..
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 333222111 1233455555555555544322 11 22 12222334455666666666666666654 34444
Q ss_pred HHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhccCccCHHHHHHHHH
Q 003725 475 AYNVLARGLA-QYGSVRDAL-DCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKE-ARAFFDDDLKEKCLENYSAMVDGYC 551 (800)
Q Consensus 475 ~~~~l~~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~l~~~~~ 551 (800)
.|...+..+. +-.+.-++. .+|...-+. .|.......+--......++.+ ..+++...+..+.+..+..+...|-
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 4444333332 222222222 334333322 2211111111111111122222 2222332333333444444444443
Q ss_pred ccCCHHHHHHHHHHHH----HcCC----------CCChh--cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHH
Q 003725 552 EANHLEEAFQFFMTLS----QRGF----------LMRSE--SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT-TYD 614 (800)
Q Consensus 552 ~~g~~~~A~~~~~~~~----~~~~----------~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 614 (800)
.....+-..++...+. ..|. .|... ++..+...+-..|+++.|..+++.++.. .|+.+ .|.
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~ 409 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL 409 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence 3222221111111111 1110 22322 3344566677888999999998888764 34433 455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
.=.+.+.+.|+++.|...+++..+.+.. |...-.--+.-..++++.++|.++.......|.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5567888899999999999988876443 555444555666788899999998888887764
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.9e-08 Score=102.29 Aligned_cols=162 Identities=9% Similarity=-0.020 Sum_probs=82.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK 241 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 241 (800)
|...++.| ..+++...++..+.+.+ +++....+.....-.+...|+-++|......-...++ .+.+-|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 33444433 33556666665555555 2233344444444445555666666655555544322 233345544444444
Q ss_pred cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003725 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESV 321 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 321 (800)
..++++|++.|..+...+ +.|...+.-+.-.-.+.|+++.....-..+.+.. +.....|..+..++.-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655544 2345555555555555555555555554444431 22334455555555555666666666
Q ss_pred HHHHHhC
Q 003725 322 LLRMKQL 328 (800)
Q Consensus 322 ~~~m~~~ 328 (800)
+++..+.
T Consensus 166 l~ef~~t 172 (700)
T KOG1156|consen 166 LEEFEKT 172 (700)
T ss_pred HHHHHHh
Confidence 5555543
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=9.2e-11 Score=108.29 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIE 516 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 516 (800)
|-.--+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|-++|.+..++..|+.++.+-.+. ++.+........+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344467889999999999999999988876 577888999999999999999999999998886 4555555566778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 517 GLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
.+...++.++|.++++..++.. +++....+...|.-.++++.|+..|+++++-|.. ++..|..+.-+|...+++|-+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 8888999999999999766643 4555777778888899999999999999999987 889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPSK--TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 672 (800)
+.-|++.+.....|+. .+|-.+.......||+..|.+.|...+..+.. ....+|.|.-.-.+.|+.++|..+++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999999877555553 35777888888999999999999999987666 77889999888899999999999999988
Q ss_pred HcCCCCCH
Q 003725 673 LRGIKPDV 680 (800)
Q Consensus 673 ~~g~~pd~ 680 (800)
+ +.|+.
T Consensus 457 s--~~P~m 462 (478)
T KOG1129|consen 457 S--VMPDM 462 (478)
T ss_pred h--hCccc
Confidence 6 46764
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=2.6e-08 Score=104.59 Aligned_cols=292 Identities=15% Similarity=0.161 Sum_probs=206.3
Q ss_pred HHHHHHccCChHHHHHHHHHccCCCCccC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhc
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWS-KFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD-IVIKALCKL 242 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~ 242 (800)
....+...|++++|++.+..-... .+| ..........+.+.|+.++|..++..+.+++ |+...|. .+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 344567789999999999875543 344 4456677889999999999999999999875 5555554 444444222
Q ss_pred -----CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003725 243 -----ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLD-VGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLV 316 (800)
Q Consensus 243 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 316 (800)
...+...++|+++...- |.......+.-.+.....+. .+..++..+...|+| .+|+.+-..|.......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 25677788888887653 44444333333333322333 344566777778854 35666666666555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHh
Q 003725 317 EAESVLLRMKQL----R----------VTPDK--YVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQ 380 (800)
Q Consensus 317 ~A~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (800)
-..+++...... + -+|.. .++..+...|...|++++|++++++.++..+.....+..-.+.+-+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 555666555422 1 12333 3446667888899999999999999999876666888999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhcC
Q 003725 381 MGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN------Y--TTVIDGYILRG 452 (800)
Q Consensus 381 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~g 452 (800)
.|++.+|.+.++.....+.. |..+-+-.+..+.+.|++++|.+++......+..|-... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988766 777777888889999999999999999877654332221 1 33456888999
Q ss_pred CHHHHHHHHHHHHH
Q 003725 453 KLVDAIGLFKKMRE 466 (800)
Q Consensus 453 ~~~~A~~~~~~~~~ 466 (800)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999888777654
No 68
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.36 E-value=8.1e-08 Score=102.29 Aligned_cols=567 Identities=11% Similarity=-0.016 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HhHHHHH
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQ--FTYDIVI 236 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li 236 (800)
..+|..|...|+...+..+|.+.|+...+.+ ..+..++....+.|++..+++.|..+.-...+.. +--. ..|..+.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcc
Confidence 4578889999998889999999999998876 4577888999999999999999999843332221 1111 1233344
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003725 237 KALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLV 316 (800)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 316 (800)
-.|.+.++..+|+.-|+...+.. +.|...|..+..+|.+.|++..|.++|.++.... |.+...-.-.....+..|.+.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHH
Confidence 55677889999999999988865 3377899999999999999999999999888764 223333333444567789999
Q ss_pred HHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCch-HHHHHHHHHHHhcC
Q 003725 317 EAESVLLRMKQL------RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI-------GIKTN-YVVSVILKCLCQMG 382 (800)
Q Consensus 317 ~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g 382 (800)
+|+..+..+... +-.--..++..+...+...|-..+|.+.+++.++. ....+ ..|..+..
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd------ 721 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD------ 721 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH------
Confidence 999988877642 11112234444444444555555555555554331 11111 22222211
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------
Q 003725 383 KTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEV---E---EAVKLFNEMEGRQIVPDVANYTTVIDGYIL------ 450 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------ 450 (800)
|..+|.... .. .|+.....++..-.-+.+.. | -+.+.+-.-.+ ...+..+|..++..|.+
T Consensus 722 ----ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 722 ----ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred ----HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence 222222222 00 11221111111111122211 1 01111111111 11134445555544443
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 451 --RGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEAR 528 (800)
Q Consensus 451 --~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 528 (800)
..+...|+..+++.++.. ..+..+|+.|.-. ...|++.-+.-.|-+-.... +....+|..+.-.+.+..+++.|.
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhh
Confidence 122346677777766542 2256666666544 44456655555554444432 445566666666677778888888
Q ss_pred HHHHHHHhccCccC---HHHHHHHHHccCCHHHHHHHHHHH--H--HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 529 AFFDDDLKEKCLEN---YSAMVDGYCEANHLEEAFQFFMTL--S--QRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601 (800)
Q Consensus 529 ~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 601 (800)
..|. +...-+|.. |..........|+.-++..+|.-- . ..|-.++...+.........+|+.++-+...+.+
T Consensus 871 ~af~-~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFS-SVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHH-hhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 8887 554443333 554444455667777777666541 1 2233334444444444455556655544333332
Q ss_pred HhC---------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHH----HHHHHHHhcCCHHHHHHH
Q 003725 602 LKL---------DAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYT----MLIHGFCKLNCLREACNI 667 (800)
Q Consensus 602 ~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~----~li~~~~~~g~~~~A~~~ 667 (800)
-.. +.+.+...|...+...-+.+.+..|.....++.. ....-|...|+ .+.+.++..|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 211 3344555666666666677777777666665442 00112344444 334455666777766554
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHC-CCCchhhhccCCCCCcchHHHH
Q 003725 668 FKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEM-EISPDVMLGQGLEPDTVCYTVL 746 (800)
Q Consensus 668 ~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~l 746 (800)
+..... ..|......-+..+. .+++.++.+.|++.... +.+.+ -.+..+.+
T Consensus 1030 ~~~~~~---evdEdi~gt~l~lFf----------------kndf~~sl~~fe~aLsis~se~d---------~vvLl~kv 1081 (1238)
T KOG1127|consen 1030 SWKEWM---EVDEDIRGTDLTLFF----------------KNDFFSSLEFFEQALSISNSESD---------KVVLLCKV 1081 (1238)
T ss_pred hcccch---hHHHHHhhhhHHHHH----------------HhHHHHHHHHHHHHhhhcccccc---------hhhhhHHH
Confidence 433221 122222222222222 35677788888777652 11211 23455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 747 IARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 747 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
+.+....|.-+.|..++-+.... -+|+..
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~l-s~~~~~ 1110 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKSL-SKVQAS 1110 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHHh-Cccchh
Confidence 77777778888888777666543 244443
No 69
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=7.4e-07 Score=92.97 Aligned_cols=579 Identities=13% Similarity=0.096 Sum_probs=307.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHH
Q 003725 84 RKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSD 163 (800)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (800)
.|+.+.|.+-..-++ +-.+|..+++.+.+..+.+-|.--+-.|-... +... +..-...+.... .
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR---gaRA---lR~a~q~~~e~e----a 804 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR---GARA---LRRAQQNGEEDE----A 804 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh---hHHH---HHHHHhCCcchh----h
Confidence 455566655444443 45688899999988888877766665553321 1111 111111111111 1
Q ss_pred HHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 003725 164 AMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243 (800)
Q Consensus 164 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 243 (800)
.+...-...|++++|..+|.+..+.+ .|=..|-..|.+++|.++.+.-.+. .=..||..-..-+-..+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhc
Confidence 22223346689999999998877643 3344567789999999887754332 12346666666667788
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLL 323 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (800)
+.+.|++.|++... +--.++..|.. +.....++.+.+. +...|.-....+-..|+.+.|+.+|.
T Consensus 873 Di~~AleyyEK~~~----hafev~rmL~e------~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGV----HAFEVFRMLKE------YPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHHHHHHHHhcCC----hHHHHHHHHHh------ChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHH
Confidence 89999999887432 11112221111 2222222222222 34556666666677888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 003725 324 RMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMG----- 398 (800)
Q Consensus 324 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 398 (800)
..+. |-++++..|-.|+.++|-++-++-.. ..+...+.+.|-..|++.+|..+|.+.....
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd-----~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEESGD-----KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhccc-----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 56677888888888888888765322 1556677888888888888888887654211
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHc
Q 003725 399 ---IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKK--------MREM 467 (800)
Q Consensus 399 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~ 467 (800)
-..+...+|.. ......+.-.|-++|++.-. -+...+..|.+.|.+.+|+++--+ ++..
T Consensus 1003 cKEnd~~d~L~nla--l~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLA--LMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHhcCHHHHHHHHH--hhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 00111112211 11112233344445544321 012234457777877777765321 1222
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccC-cc--
Q 003725 468 --GHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK-EKC-LE-- 541 (800)
Q Consensus 468 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~-- 541 (800)
....|+...+.-..-++...+++.|..++-..++. ...+ .+|+..++.-..++-+ ++. .++ ..
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Al-qlC~~~nv~vtee~aE-~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGAL-QLCKNRNVRVTEEFAE-LMTPTKDDMPNE 1141 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHH-HHHhcCCCchhHHHHH-hcCcCcCCCccH
Confidence 22346666777777777778888888777665532 1122 2344444444444444 332 221 11
Q ss_pred -----CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH-------------HHHHHHHh
Q 003725 542 -----NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAF-------------KLLDTMLK 603 (800)
Q Consensus 542 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-------------~~~~~~~~ 603 (800)
....+...+.++|.+..|-+-|.+.-.+ ...++++.+.|+.++-. -.-..+..
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt 1212 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT 1212 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh
Confidence 1556777788888888887777554322 23355666666654411 01111222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003725 604 LDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLY 683 (800)
Q Consensus 604 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 683 (800)
.+.+.++.+...++.-|.+..-++.--.+++..... .+..|..+-. ..|-.++|.+.+.++..++ -....+
T Consensus 1213 lDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l 1283 (1416)
T KOG3617|consen 1213 LDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGL 1283 (1416)
T ss_pred cccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHH
Confidence 345566666666665555554444444444433322 1222222111 1344556666666655432 112223
Q ss_pred HHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003725 684 TILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVF 763 (800)
Q Consensus 684 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 763 (800)
+.|-.-.+..-..-. .... -.++..+...-...|.+..+.| .+.+-...|..||..|....+|..|-..+
T Consensus 1284 ~~Lq~~~a~vk~~l~--~~q~--~~eD~~~~i~qc~~lleep~ld------~~Ir~~~~~a~lie~~v~~k~y~~AyRal 1353 (1416)
T KOG3617|consen 1284 DALQEDLAKVKVQLR--KLQI--MKEDAADGIRQCTTLLEEPILD------DIIRCTRLFALLIEDHVSRKNYKPAYRAL 1353 (1416)
T ss_pred HHHHHHHHHHHHHHH--HHHH--hhhhHHHHHHHHHHHhhCcCCC------CcchhHHHHHHHHHHHHhhhhccHHHHHH
Confidence 333222222000000 0000 0112223333333333333222 23335568999999999999999999999
Q ss_pred HHHHHC
Q 003725 764 DEMIDR 769 (800)
Q Consensus 764 ~~~~~~ 769 (800)
++|..+
T Consensus 1354 ~el~~k 1359 (1416)
T KOG3617|consen 1354 TELQKK 1359 (1416)
T ss_pred HHHhhc
Confidence 999865
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.5e-10 Score=106.86 Aligned_cols=231 Identities=11% Similarity=0.006 Sum_probs=178.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
..+.++|.+.|.+.+|.+.|+..++. .|.+.+|..|.++|.+..+.+.|+.++.+-.+. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46788899999999999999888776 467788888999999999999999999988765 334444445577788888
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
++.++|.++|+...+.. ..++.....+...|.-.++.+.|+.+++++.+.|. .++..|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988865 44677777778888888899999999999998884 47778888888888888888888888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 323 LRMKQLRVTPD--KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMG 398 (800)
Q Consensus 323 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 398 (800)
++....--.|+ ...|-.+.......||+..|.+.|+-....+......++.+.-.-.+.|++++|..+++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88776543343 34566667777777888888888887777665555666666666667777777777776665543
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=8.4e-08 Score=96.63 Aligned_cols=439 Identities=14% Similarity=0.108 Sum_probs=241.5
Q ss_pred HHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHH--HHHHHH--
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDI--VIKALC-- 240 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~-- 240 (800)
=+..+...|++++|.+...++...+ +-+..++..-+.++++.+++++|+.+.+.-.. ..+++. +=++||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 3556778899999999999999876 45667777778889999999999955543221 112222 345666
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPL-NAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 319 (800)
+.+..++|+..++-.. ..+..+...-...+.+.|++++|+.+++.+.+.+... +...-..++..-. .-.+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH
Confidence 7899999999998322 1234467777888999999999999999998875321 1111122221111 01111
Q ss_pred HHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCc--------hHHHHHHHHHHHhc
Q 003725 320 SVLLRMKQLRVTPDKYVYSAL---ISGYCKCGNIIKALSLHGEMTSIG-------IKT--------NYVVSVILKCLCQM 381 (800)
Q Consensus 320 ~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~-------~~~--------~~~~~~l~~~~~~~ 381 (800)
+ +......| ..+|..+ ...++..|++.+|+++++...+.+ -.. +.+-..+..++-..
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 22222233 2234333 455678899999999998883221 111 13344566677788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH-H-HHHHHHHHHHhCCC----------CCCHHHH-HHH
Q 003725 382 GKTSEAIKKFKEFKSMGIFLDQ----VCYNVIMDALCKLGEV-E-EAVKLFNEMEGRQI----------VPDVANY-TTV 444 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~-~-~A~~~~~~~~~~~~----------~~~~~~~-~~l 444 (800)
|+.++|..++....+..+. |. ..-|.|+.+ ....++ + .++..++....... .-..... +.+
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877653 32 222333322 111111 1 12222222211100 0011111 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 445 IDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ--YGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSG 522 (800)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 522 (800)
+..| .+.-+.+.++-...... .| ...+.+++..+.+ ......+..++...-+....-...+....+......|
T Consensus 316 L~l~--tnk~~q~r~~~a~lp~~--~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 316 LALF--TNKMDQVRELSASLPGM--SP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHH--hhhHHHHHHHHHhCCcc--Cc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 2222 33445555544433321 23 3344445444332 2346777788777766532223455666677788899
Q ss_pred CHHHHHHHHH--------HHHhcc-CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCChh----cHHHHHHHHHh
Q 003725 523 RVKEARAFFD--------DDLKEK-CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGF--LMRSE----SCCKLLTNLLI 587 (800)
Q Consensus 523 ~~~~a~~~~~--------~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~----~~~~l~~~~~~ 587 (800)
+++.|.+++. ....-. .+....++...|.+.++-+.|..++.+....-. .+... .+......-.+
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999999888 222222 233366777777787777777777666543210 01111 12222222334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQV 632 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 632 (800)
.|+.++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 455555555555555543 34444455555554432 33444333
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.8e-07 Score=94.33 Aligned_cols=450 Identities=14% Similarity=0.111 Sum_probs=243.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 198 NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
-+=++.+...|++++|.+....+...+ +.+...+..-+.++.+.+.+++|+.+.+.-... ..+..-+..=+.+..+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 334667788899999999999998875 456667777777889999999999666543211 11111112234445578
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 278 GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSL 356 (800)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 356 (800)
+..|+|+..++-.. +.+..+...-.+.+.+.|++++|..+|+.+.+.+..- |...-..++.+- - +...
T Consensus 93 nk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a---~l~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----A---ALQV 161 (652)
T ss_pred ccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----H---hhhH
Confidence 99999998887222 2234466667788889999999999999998764321 111111111111 0 1111
Q ss_pred HHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CC-CCHH-----HHHHHHHHHHhcCCH
Q 003725 357 HGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMG--------IF-LDQV-----CYNVIMDALCKLGEV 419 (800)
Q Consensus 357 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~-~~~~-----~~~~li~~~~~~g~~ 419 (800)
..+......|. ..+....-.+...|++.+|+++++.....+ .. -+.. +-.-+.-++-..|+.
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 01222222333 334444556667889999999888773211 00 0000 111233345566777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCH-H-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 420 EEAVKLFNEMEGRQIVPDVANYTTVIDGYIL---RGKL-V-DAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALD 494 (800)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~-~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (800)
++|..++....+.++. |..+.....+-+.. ..++ + .++..++..... ..+.+..
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~--------------------l~~~~l~ 299 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK--------------------LAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHH--------------------hHHHHHH
Confidence 7777777777666443 43322222211111 1111 1 111111111100 0000000
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC-HHHHHHHHH--ccCCHHHHHHHHHHHHHcCC
Q 003725 495 CLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN-YSAMVDGYC--EANHLEEAFQFFMTLSQRGF 571 (800)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~ 571 (800)
-+..-... ....-+.++..| .+..+.+.++.. .+....+.. +..++.... +...+.+|.+++...-+..+
T Consensus 300 ~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a-~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 300 KLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSA-SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHH-hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 00000000 000011222222 233344444433 333222222 233332222 22245666666666655554
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC
Q 003725 572 LMRSESCCKLLTNLLIEGYNNKAFKLLD--------TMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRH--GL 641 (800)
Q Consensus 572 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 641 (800)
.-...+....+...+..|+++.|++++. .+.+.+..|. +...+...+.+.++-+.|..++...... .-
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 4334455566667778888888888888 5555544444 4556777888888888888888877741 11
Q ss_pred CCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 003725 642 IPDLISYTML----IHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKI 693 (800)
Q Consensus 642 ~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 693 (800)
.+......++ ...-.+.|+-++|..+++++.+.. .+|..+..-++.+|+.+
T Consensus 451 ~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 451 QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 2222333333 333457799999999999999853 67888899999999884
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=2.2e-06 Score=87.35 Aligned_cols=465 Identities=15% Similarity=0.138 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHH
Q 003725 196 TCNFFMNQLLKCGEVDMVLVLYEEMKSV-GFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGL 274 (800)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 274 (800)
.|-.-+..+.++|++-.-...|+..... .+......|...++..-..+-.+.+..+|+..++. ++..-...|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4444555556666666666666655432 12222335555555555556666666666665542 222345555555
Q ss_pred HhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 003725 275 CENGRLDVGYDLLLKWSENG------IPLNAFAYTAVIREFCQNSRLV---EAESVLLRMKQLRVTPDK--YVYSALISG 343 (800)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~--~~~~~li~~ 343 (800)
+..+++++|.+.+..+.... .+.+-..|.-+.+...+..+.- ....+++.+... -+|. ..|.+|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 66666666666655554321 1333444555544444433322 122333333321 2332 345666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC--
Q 003725 344 YCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG----------------------KTSEAIKKFKEFKSMGI-- 399 (800)
Q Consensus 344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~a~~~~~~~~~~~~-- 399 (800)
|.+.|.+++|.++|++....-... .-|..+..+|.+-. +++-.+.-|+.+.....
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tv-rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTV-RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheeh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 666666666666666655432111 11222222222111 11112222222222210
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 400 ---------FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP------DVANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 400 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
+-++..|..-+. +..|+..+-...+.+.... +.| -...|..+.+.|-..|+.+.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 011222221111 1233444444444444432 111 1233444555555555555555555555
Q ss_pred HHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc
Q 003725 465 REMGHKPD---IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLE 541 (800)
Q Consensus 465 ~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (800)
.+-..+-- ..+|..-...-.+..+++.|+.+++..... |.... ..+...+...++. ++ +++.
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r-lh------rSlk 478 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR-LH------RSLK 478 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH-HH------HhHH
Confidence 44322110 122333333333444555555544444322 11100 0111111111100 00 0111
Q ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 003725 542 NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT-TYDKVIGAL 620 (800)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~ 620 (800)
.|...++.--..|-++....+|+++.+..+. ++.........+-.+..++++.+++++-+..-..|+.. .|+..+.-+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 2555555555666777777777777766554 44444455555556666777777777665554344433 344444433
Q ss_pred Hh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 003725 621 CL---AGKIKWAHQVFDFLTRHGLIPDLISYTMLIH--GFCKLNCLREACNIFKDMKLRGIKPDV--VLYTILCD 688 (800)
Q Consensus 621 ~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~ll~ 688 (800)
.+ ...++.|+.+|+++++ |..|...-+-.|+. .--+.|....|++++++.... +++.. ..|++.|.
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 32 2356777777777777 33343222222221 112456677777777776543 34332 24555443
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=1.5e-07 Score=98.95 Aligned_cols=297 Identities=14% Similarity=0.077 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHH
Q 003725 196 TCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLC 275 (800)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 275 (800)
..-....++...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++ .|..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHh
Confidence 3344456778999999999999886553 333455666788889999999999999999999872 34555555555553
Q ss_pred hc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 276 EN-----GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRL-VEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349 (800)
Q Consensus 276 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (800)
.. .+.+...++++++.+.- |...+...+.-.+.....+ ..+..++..+...|+++ +++.|-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 22 25667788888887752 3322222222122221122 34556777777888653 45555566665555
Q ss_pred HHHHHHHHHHHHHCC-------------CC-ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003725 350 IIKALSLHGEMTSIG-------------IK-TN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDA 412 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~-------------~~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 412 (800)
.+-..+++......- .. |. .++..+...|-..|++++|++.+++..+..+. .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 555555555554321 11 22 34466677777888999999998888887644 36677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H----HH--HHHHHHHH
Q 003725 413 LCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI--K----AY--NVLARGLA 484 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~----~~--~~l~~~~~ 484 (800)
+-+.|++++|.+.++.....+.. |...-+..+..+.++|++++|.+++....+.+..|-. . .| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 88889999999988888877655 6777777788888889999998888888766543321 1 12 33456777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003725 485 QYGSVRDALDCLKYMKK 501 (800)
Q Consensus 485 ~~g~~~~a~~~~~~~~~ 501 (800)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888777766654
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.30 E-value=9e-07 Score=94.62 Aligned_cols=159 Identities=11% Similarity=-0.027 Sum_probs=78.2
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCC
Q 003725 77 VNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSN 156 (800)
Q Consensus 77 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (800)
++.+++-..+...|.+.|+.+....-. +...+..+...++....++.|..+....-+..+. .
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a-----------------~ 559 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-----------------F 559 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-----------------H
Confidence 333444333555666666666532111 5566667777777777777777664333222110 0
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HhHHHH
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQ-FTYDIV 235 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l 235 (800)
.-...|....-.|...++...|+..|+...+.+ +.|...|..++.+|.++|++..|.++|....... |+. ..---.
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~ 636 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKE 636 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHH
Confidence 011112223334455555666666666655554 3355556666666666666666666665554421 221 111111
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 003725 236 IKALCKLARFEEAFDVLNEMN 256 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~ 256 (800)
....|..|.+.+|+..++...
T Consensus 637 A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 222344556666655555443
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.29 E-value=6.2e-07 Score=92.30 Aligned_cols=547 Identities=17% Similarity=0.134 Sum_probs=288.1
Q ss_pred hCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHH
Q 003725 118 YCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTC 197 (800)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (800)
..+.|++|..+++.+..+. ..+.-|..+...|...|+++.|.++|-+.- .+
T Consensus 744 ~akew~kai~ildniqdqk--------------------~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~ 794 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--------------------TASGYYGEIADHYANKGDFEIAEELFTEAD---------LF 794 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--------------------cccccchHHHHHhccchhHHHHHHHHHhcc---------hh
Confidence 4566677776666654441 122346678888999999999999986543 34
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 198 NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
+-.+.+|.+.|+|+.|.++-++... .+.....|..-..-+-+.|++.+|.++|-.+. .|+ ..|..|-+.
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~ 863 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKH 863 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhh
Confidence 5568889999999999998877643 34556677777777788899999998886543 243 346778888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 278 GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
|..+..+++.++--..- -..|...+..-+-..|++..|+.-|-+.. -|.+-+++|-..+.|++|.++-
T Consensus 864 ~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 864 GLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred CcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 88888887776543221 23455666777778888888887775543 2455667777777777776664
Q ss_pred HHHHHC--------------CCCch-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 358 GEMTSI--------------GIKTN-------YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKL 416 (800)
Q Consensus 358 ~~~~~~--------------~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (800)
+.--.. |-... ..+...+...+..+.++-|.++-+-..+... +. ....+...+-..
T Consensus 932 ktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~-~~--vhlk~a~~lede 1008 (1636)
T KOG3616|consen 932 KTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKM-GE--VHLKLAMFLEDE 1008 (1636)
T ss_pred hccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccC-cc--chhHHhhhhhhc
Confidence 321111 11000 0111122233344444444444433333221 11 112233445567
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcC-CHHHHHHHHHHH---------HHcCCCCCH--HHHHHH
Q 003725 417 GEVEEAVKLFNEMEGRQIVPDVANYTTVI-----DGYILRG-KLVDAIGLFKKM---------REMGHKPDI--KAYNVL 479 (800)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g-~~~~A~~~~~~~---------~~~~~~p~~--~~~~~l 479 (800)
|++++|-+.+-+..+.+. -..||...+ .-+.+.| ++++|..+|-.= -+. .-|+. ..|..-
T Consensus 1009 gk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~-h~~~~l~dv~tgq 1085 (1636)
T KOG3616|consen 1009 GKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA-HCEDLLADVLTGQ 1085 (1636)
T ss_pred cchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh-hChhhhHHHHhhh
Confidence 788888777777665421 111221110 1122333 344444433210 000 01111 123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------c--cCcc
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK----------------E--KCLE 541 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~--~~~~ 541 (800)
.+.....|++..|..++-+.. +|+. .+..|...+-+..|.++.+.-+. . ..+.
T Consensus 1086 ar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd 1156 (1636)
T KOG3616|consen 1086 ARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVD 1156 (1636)
T ss_pred hhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccH
Confidence 333444566666655443322 3442 23445555666666555442111 1 1233
Q ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 003725 542 NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPS--KTTYDKVIGA 619 (800)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 619 (800)
.+-.-..-.-+.|++.+|...+-++.+.... -..++..| .++|-++.-+. +.|+ .......+.+
T Consensus 1157 ~fvaqak~weq~gd~rkav~~~lkinrdst~-----nd~l~e~~-----~~kaadl~ikf----l~~d~nme~i~aa~~a 1222 (1636)
T KOG3616|consen 1157 GFVAQAKEWEQAGDWRKAVDALLKINRDSTD-----NDALAEHC-----TEKAADLSIKF----LMGDENMEVIGAAGGA 1222 (1636)
T ss_pred HHHHHHHHHHhcccHHHHHHHHhhhccCCCC-----cHHHHHHH-----HHHHHhhhhhh----cCCccchhhHHhcchh
Confidence 3445555566667777776666554322111 11111111 11121211111 1232 2444555556
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCC
Q 003725 620 LCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSS 699 (800)
Q Consensus 620 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~ 699 (800)
+...|..+.|.+++-..- .-...|+++|+...+.+|.++-+++. |...
T Consensus 1223 l~~~~~~e~aael~l~f~---------~~keaida~~~~eewakakqvake~~-----p~~~------------------ 1270 (1636)
T KOG3616|consen 1223 LDEAGCHEAAAELLLLFD---------LSKEAIDAFCEAEEWAKAKQVAKELD-----PEME------------------ 1270 (1636)
T ss_pred hhcccccHHHHHHHHHhh---------hHHHHHHHHHhHHHHHHHHHHHHHhC-----chhh------------------
Confidence 666777776666553221 12234677788888888887777652 3321
Q ss_pred CCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 700 SSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYK 779 (800)
Q Consensus 700 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 779 (800)
++..+.+++.....-+.|.+. + +-.-+-++.+...+.|++|++.-++ ..++|=-.-|.
T Consensus 1271 ------------~~idk~yke~lknegkl~eli------~-vdviaaidl~ien~qwdk~idtak~---qnykpil~kyv 1328 (1636)
T KOG3616|consen 1271 ------------DEIDKHYKEFLKNEGKLDELI------D-VDVIAAIDLMIENDQWDKAIDTAKK---QNYKPILDKYV 1328 (1636)
T ss_pred ------------HHHHHHHHHHHhccCcccccc------c-hhHHHHHHHHHhcccHHHHHHHHHh---cccHHHHHHHH
Confidence 123334444443222221110 1 1122456677777888877765433 35666655555
Q ss_pred HHHc-cccCCCCHHHHHhhhc
Q 003725 780 ALLC-GCPTKKDVDKYLSLFA 799 (800)
Q Consensus 780 ~l~~-~~~~~g~~~~A~~~~~ 799 (800)
++.. .+.+.|+..+|+.+++
T Consensus 1329 a~yaa~li~~~d~aq~lal~~ 1349 (1636)
T KOG3616|consen 1329 ALYAAHLIHEGDLAQALALLE 1349 (1636)
T ss_pred HHHHHHHHhcCcHHHHHHHHH
Confidence 5443 3467777777777664
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6e-07 Score=86.44 Aligned_cols=399 Identities=15% Similarity=0.064 Sum_probs=240.8
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcC-Ch-hHHHHHHHHHHhCCCCCCHHhHHHH
Q 003725 158 FYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCG-EV-DMVLVLYEEMKSVGFSLNQFTYDIV 235 (800)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-~~a~~~~~~m~~~~~~~~~~~~~~l 235 (800)
+.......+.+|-..++-+.|...+.+.....-. .--|.++.-+-+.| +. +.+...-+-+.+. | .... .
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvrec---p--~aL~-~ 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIREC---P--MALQ-V 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHhc---c--hHHH-H
Confidence 4556677888888889999999988777654322 23344444443333 22 2222222222221 1 1111 1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 003725 236 IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLC--ENGRLDVGYDLLLKWSEN-GIPLNAFAYTAVIREFCQN 312 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 312 (800)
|.+..+.+ +..+...=..|-...+.|+..+...-+.+++ -.++...|...+-.+... -++-|+.....+...+...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11221111 1111111112222233444444444444443 345555555544444332 2566778888888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 313 SRLVEAESVLLRMKQLRVTPDKY-VYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKF 391 (800)
Q Consensus 313 g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 391 (800)
|+..+|+..|+..... .|+.. ......-.+...|+++....+...+....-.....|..-+.......+++.|+.+-
T Consensus 246 Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred cCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999888764 23322 22223334567788888877777776554333344555555566677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 392 KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471 (800)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (800)
++....... +...|-.-...+...+++++|.-.|+......+ -+...|.-|+.+|...|++.+|.-+-+...+. +..
T Consensus 324 eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 324 EKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 877766443 344454445567778888888888888776532 26788888999999888888888776665443 223
Q ss_pred CHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CccCHHHHHH
Q 003725 472 DIKAYNVLA-RGLA-QYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK-CLENYSAMVD 548 (800)
Q Consensus 472 ~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~l~~ 548 (800)
+..+.+.+. ..|. ...--++|.++++...+.. |.-......+.+.+...|..++++.++++.+... +....+.|.+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGD 479 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHH
Confidence 555555542 2222 2333467888888777653 2234556677777888888888888888766644 4444778888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC
Q 003725 549 GYCEANHLEEAFQFFMTLSQRGFL 572 (800)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~ 572 (800)
.+...+.+++|++.|...+..++.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcc
Confidence 888888888888888887776654
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=5e-09 Score=114.37 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 315 LVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEF 394 (800)
Q Consensus 315 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 394 (800)
+++|...+++..+.. +.+...+..+...+...|++++|...+++..+.++....++..+..++...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555555555442 1234444444455555555555555555555544443344445555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 395 KSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
.+..+.. ...+..++..+...|++++|...++++.....+-+...+..+...+...|++++|...+.++..
T Consensus 399 l~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 399 LKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 5544331 1122222333444555555555555554432111333344455555555555555555555443
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=2.1e-09 Score=117.22 Aligned_cols=266 Identities=14% Similarity=0.048 Sum_probs=178.4
Q ss_pred cCHHHHHHHHHHHH-----HcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---------cCChhHHHHHHHHHHh
Q 003725 192 WSKFTCNFFMNQLL-----KCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK---------LARFEEAFDVLNEMNK 257 (800)
Q Consensus 192 ~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~ 257 (800)
.+..+|...+.+.. ..+.+++|...|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555432 1245788888888888753 2234455555554432 2447889999988888
Q ss_pred CCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003725 258 AGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVY 337 (800)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 337 (800)
.+ +.+...+..+...+...|++++|...++++.+.+ |.+...+..+...+...|++++|...+++..+.... +...+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 65 2366778888888888899999999999988875 556778888888888999999999999998886432 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 338 SALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKL 416 (800)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (800)
..++..+...|++++|...++++.....+.. ..+..+..++...|+.++|...+.++...... +....+.+...|+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhcc
Confidence 3344456668889999999888876643222 56677788888899999999998887655332 344556666677777
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 417 GEVEEAVKLFNEMEGR-QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 417 g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
| +.|...++.+.+. ...+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7 4777777776543 111222222 33445556676666655 777665
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=2.9e-09 Score=103.56 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKA 238 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 238 (800)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4556666677777777777777777666543 2345566666667777777777777777666543 2344555566666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003725 239 LCKLARFEEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVE 317 (800)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 317 (800)
+...|++++|.+.++........ .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66677777777777666653211 123344555555666666666666666665542 3344455556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 318 AESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361 (800)
Q Consensus 318 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 361 (800)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665554 22344444455555555566666655555443
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.9e-11 Score=84.07 Aligned_cols=50 Identities=48% Similarity=0.895 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 643 PDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 643 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=4.3e-09 Score=102.36 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHH
Q 003725 194 KFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQG 273 (800)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 273 (800)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444555555555555555555555554432 2233444445555555555555555555554432 1123334444444
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003725 274 LCENGRLDVGYDLLLKWSE 292 (800)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~ 292 (800)
+...|++++|.+.+++..+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 4444444444444444443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=4.8e-09 Score=108.41 Aligned_cols=243 Identities=16% Similarity=0.141 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C
Q 003725 405 CYNVIMDALCKLGEVEEAVKLFNEMEGR-----Q-IVPDVA-NYTTVIDGYILRGKLVDAIGLFKKMREM-----GHK-P 471 (800)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p 471 (800)
+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++.+|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555666666666666666655432 1 011221 2223445566666666666666665431 111 1
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCH
Q 003725 472 D-IKAYNVLARGLAQYGSVRDALDCLKYMKKQ-----GV-KPN-VITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENY 543 (800)
Q Consensus 472 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 543 (800)
. ..+++.|..+|.+.|++++|..+++...+. |. .|. ...++.+...++..+++++|..++.+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a--------- 351 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA--------- 351 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---------
Confidence 1 234555555566666666655555544321 10 111 112333444455555555555555521
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHH
Q 003725 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKL-----D--AKPSKTTYDKV 616 (800)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l 616 (800)
++++..........-..++..+...|...|++++|.+++++++.. + ..-....++.+
T Consensus 352 ----------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 352 ----------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ----------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 222221111111112345666777777777777777777776543 1 12224467788
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 617 IGALCLAGKIKWAHQVFDFLTR----HGLI-P-DLISYTMLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 617 ~~~~~~~g~~~~A~~~~~~~~~----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 672 (800)
...|.+.+.+.+|.++|.+... .|+. | ...+|..|+..|.+.|++++|.++.+...
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8889999999999988887653 2322 1 35678899999999999999999988776
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.4e-11 Score=83.59 Aligned_cols=50 Identities=36% Similarity=0.680 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccC
Q 003725 738 PDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPT 787 (800)
Q Consensus 738 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 787 (800)
||..+||+++++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999875
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.4e-08 Score=105.04 Aligned_cols=241 Identities=18% Similarity=0.193 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--
Q 003725 369 YVVSVILKCLCQMGKTSEAIKKFKEFKSM-----GI-FLDQV-CYNVIMDALCKLGEVEEAVKLFNEMEGR-----QI-- 434 (800)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-- 434 (800)
.+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++..- |.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444555555555555555555444322 11 11222 2334666777888888888888887542 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 003725 435 VPDVANYTTVIDGYILRGKLVDAIGLFKKMREM-----GHK-PDIK-AYNVLARGLAQYGSVRDALDCLKYMKKQ---GV 504 (800)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 504 (800)
+.-..+++.|...|.+.|++++|..+++...+. |.. |.+. .++.+...++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112356677777888899988888887776431 222 2222 3566777788889999999888876542 11
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----C------ccCHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003725 505 KP----NVITHNMIIEGLCTSGRVKEARAFFDDDLKEK----C------LENYSAMVDGYCEANHLEEAFQFFMTLSQRG 570 (800)
Q Consensus 505 ~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (800)
.+ -..+++.+...|.+.|++++|.+++++.+... . -..++.|...|.+.+++.+|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~--- 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK--- 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH---
Confidence 12 24567788888888888888888888544321 0 0114555555555555555555554422
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 571 FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
.+. .....+.+....+|..|...|...|+++.|.++.+.+..
T Consensus 437 -------------------------~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 437 -------------------------DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -------------------------HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 112222234456799999999999999999999988773
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.5e-06 Score=90.89 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=152.8
Q ss_pred HHHHHHH--HHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CC--------CCCH
Q 003725 161 VSDAMVK--AYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSV-GF--------SLNQ 229 (800)
Q Consensus 161 ~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~--------~~~~ 229 (800)
+...++. .|...|+.+.|++-.+.+.. ...|..+...+.+..+.|-|.-.+..|... |. .|+
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 3344443 36677999999888766543 458889999999999998888877777532 11 121
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 230 FTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREF 309 (800)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 309 (800)
.+-..+...-...|.+++|+.+|.+-.+ |..|=..|-..|.+++|+++-+.=-.-. -..||.....-+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYL 868 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHH
Confidence 2222223333467888888888887654 3344455667888888888765432221 124566666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIK 389 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 389 (800)
-..++.+.|++.|++... |--..+..|. .++.....+.+.+.+ ...|......+-..|+.+.|+.
T Consensus 869 ear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~d-----~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKRD-----ESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred HhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhccc-----hHHHHHHHHHHhcccchHHHHH
Confidence 777888888888876432 1111111111 112222222222221 1455556666666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 390 KFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (800)
+|...+. |-++++..|-.|+.++|-++-++-. |....-.+...|-..|++.+|...|.+..
T Consensus 934 ~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 934 FYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7765543 4455666666777777776655522 44555566677777777777777776553
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-06 Score=83.39 Aligned_cols=292 Identities=14% Similarity=0.062 Sum_probs=149.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTN--YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVK 424 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (800)
.++...|...+-.+.....-++ .....+.+++...|+.++|+..|++....++. +........-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 3444444444443333332222 45555556666666666666666555543221 11111222223345566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGV 504 (800)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 504 (800)
+...+.... .-....|-.-.......++++.|+.+-.+.++.+.. +...|-.-...+...|+.++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 665554431 012233333334444556677777777666654322 34444444556666777777777777666552
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 003725 505 KPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTN 584 (800)
Q Consensus 505 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (800)
|-+...|..|+.+|...|++.+|.-.-+..+..- +.-.+++.++-. ..
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~---------------~~sA~~LtL~g~-----------------~V 412 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF---------------QNSARSLTLFGT-----------------LV 412 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh---------------hcchhhhhhhcc-----------------ee
Confidence 4456677777777777777777765555322211 111111111100 01
Q ss_pred HH-hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 585 LL-IEGYNNKAFKLLDTMLKLDAKPSK-TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLR 662 (800)
Q Consensus 585 ~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 662 (800)
+. ...--++|.++++..++.. |+. ...+.+...+...|..+.+..+++.... ..||....+.|.+.+...+.++
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHH
Confidence 11 1112355666666655442 332 2344555566666777777776666554 2356666677777777777777
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 003725 663 EACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 663 ~A~~~~~~m~~~g~~pd~ 680 (800)
+|++.|...+. +.|+.
T Consensus 489 ~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 489 KAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHh--cCccc
Confidence 77777766665 34543
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3e-08 Score=90.83 Aligned_cols=430 Identities=11% Similarity=0.069 Sum_probs=232.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc
Q 003725 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM 381 (800)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (800)
+++++..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-..++++....+....--..-...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 5555666666667777777766665542 125556666667777777777777777777665444433333445566667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 382 GKTSEAIKKFKEFKSMGIFLDQVCYNVIMD--ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (800)
+.+.+|+.+...+... ++...-..-+. .....+++..+..+.+.....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7777777777666543 11111111111 1234567777777777765432 44555555556667888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHN----MIIEGLCTSGRVKEARAFFDDDL 535 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~ 535 (800)
-|+...+-+--.....|+.-+. ..+.|+.+.|+++..+++++|++..+..-. ..+++- ..|+. ..+.
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh---- 236 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH---- 236 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH----
Confidence 8888876544435666776554 446788888888888888887654332110 000000 00100 0000
Q ss_pred hccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003725 536 KEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRG-FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYD 614 (800)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 614 (800)
.+.-...++.-...+.+.|+++.|.+.+.+|..+. ...|+.++..+.-.- ..+++-+..+-+.-++..+ +-...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 01111224444555677888888888888886543 345666766554322 2244455555555555554 34567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLI-PDLISYTMLIHGFC-KLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
.++-.||+..-++.|-+++.+-...... .+...|+ |++++. -.-..++|.+-++.+...- .+...-.++--.-.+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklAi~vQe~r 391 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLAIQVQEAR 391 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 8888999998888888877643321111 1233333 333333 3345666665544443210 000000000000000
Q ss_pred cCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 693 INKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLE 772 (800)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 772 (800)
.. ..+..+..|.+-+++..+. -..+..+-.+.|++..++..+.+.|..-.+ +-
T Consensus 392 ~~-----------~dd~a~R~ai~~Yd~~LE~--------------YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve--fC 444 (459)
T KOG4340|consen 392 HN-----------RDDEAIRKAVNEYDETLEK--------------YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE--FC 444 (459)
T ss_pred hc-----------ccHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhccccccHHHHHHHHHHHh--hh
Confidence 00 0122333344444433332 112344567788899999999999998874 44
Q ss_pred CCHHHHH
Q 003725 773 PNIVIYK 779 (800)
Q Consensus 773 p~~~~~~ 779 (800)
.+..+|.
T Consensus 445 ~ehd~Wk 451 (459)
T KOG4340|consen 445 NDHDVWK 451 (459)
T ss_pred cccceee
Confidence 4555553
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=4.5e-06 Score=86.18 Aligned_cols=336 Identities=14% Similarity=0.111 Sum_probs=169.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 376 KCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLV 455 (800)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (800)
..+...|+++.|+..|-+.. ..-..+.+.....+|.+|+.+++.+..... -..-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 34445555665555543221 112234455566677777777777665532 2334566667777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 456 DAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDL 535 (800)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (800)
.|.++|.+.- .++-.|..|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|++++- .+
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi-ti 850 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI-TI 850 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE-Ec
Confidence 7777775432 13445666777777777776655443 223334444444445566677777766654 22
Q ss_pred hccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003725 536 KEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDK 615 (800)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 615 (800)
..+ ..-|.+|-+.|..++.+++..+-... .-..+...+..-+-..|+...|...|-+.. -|.+
T Consensus 851 ~~p-----~~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~ka 913 (1636)
T KOG3616|consen 851 GEP-----DKAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKA 913 (1636)
T ss_pred cCc-----hHHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHH
Confidence 221 23455666666666666655443211 122344455555666666666665554432 1344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHhcc
Q 003725 616 VIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDM--KLRGIKPDVVLYTILCDAYSKI 693 (800)
Q Consensus 616 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~g~~pd~~~~~~ll~~~~~~ 693 (800)
.+++|-.++.+++|.++-+. .|-. |..-. ++..+++.=--+.|.+++++. ++.+ ++--+
T Consensus 914 avnmyk~s~lw~dayriakt---egg~-n~~k~--v~flwaksiggdaavkllnk~gll~~~-----------id~a~-- 974 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRIAKT---EGGA-NAEKH--VAFLWAKSIGGDAAVKLLNKHGLLEAA-----------IDFAA-- 974 (1636)
T ss_pred HHHHhhhhhhHHHHHHHHhc---cccc-cHHHH--HHHHHHHhhCcHHHHHHHHhhhhHHHH-----------hhhhh--
Confidence 45556556666555444321 1111 22211 112223332334455555442 1111 11111
Q ss_pred CCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 694 NKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEP 773 (800)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 773 (800)
.++.++-|..+-+-... .- ...+.--+.--+-..|++++|.+.+-+.++. ..
T Consensus 975 -------------d~~afd~afdlari~~k-~k------------~~~vhlk~a~~ledegk~edaskhyveaikl--nt 1026 (1636)
T KOG3616|consen 975 -------------DNCAFDFAFDLARIAAK-DK------------MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL--NT 1026 (1636)
T ss_pred -------------cccchhhHHHHHHHhhh-cc------------CccchhHHhhhhhhccchhhhhHhhHHHhhc--cc
Confidence 13344555554332221 11 2223334555677889999999998888743 33
Q ss_pred CHHHHHHHH-c----cccCCC-CHHHHHhhh
Q 003725 774 NIVIYKALL-C----GCPTKK-DVDKYLSLF 798 (800)
Q Consensus 774 ~~~~~~~l~-~----~~~~~g-~~~~A~~~~ 798 (800)
-..||-.-+ + -..+.| +.++|++.|
T Consensus 1027 ynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1027 YNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred ccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 344443222 1 123444 778888776
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.4e-07 Score=90.78 Aligned_cols=405 Identities=12% Similarity=0.052 Sum_probs=255.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD-KYVYSALISGYCKCGN 349 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 349 (800)
..+.+..|+++.|..+|-+.+... ++|.+.|..-..+|.+.|++++|.+=-.+-.+. .|+ ...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356778999999999999999986 668999999999999999999998776666664 455 4678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHH---HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc-------
Q 003725 350 IIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE---AIKKFKEFKSM---GIFLDQVCYNVIMDALCKL------- 416 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~------- 416 (800)
+++|+.-|.+-++..+........+..++.......+ --.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999999988876666777777776621111000 00111111110 0001111233333222110
Q ss_pred ---CCHHHHHHHHHHHH-----hC-------CCCC----------------------CHHHHHHHHHHHHhcCCHHHHHH
Q 003725 417 ---GEVEEAVKLFNEME-----GR-------QIVP----------------------DVANYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 417 ---g~~~~A~~~~~~~~-----~~-------~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~ 459 (800)
.++..|...+.... .. +..| -..-...+.+...+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 01111111111100 00 0011 01123445566666677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHHH
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITH-------NMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+....+.. -+..-++....++...|.+.++........+.|.. ...-+ ..+..+|.+.++++.++.+|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777654 24445566666777777777777666666655522 11112 223335566677777777777
Q ss_pred HHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 533 DDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTT 612 (800)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 612 (800)
+.+.....+ +...+....++++.......-.++.. ..-...-...+.+.|++..|+..|.++++.. +.|...
T Consensus 323 kaLte~Rt~------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 323 KALTEHRTP------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred HHhhhhcCH------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 655443221 12223334455555444444333322 1222233567888999999999999999987 678889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
|....-+|.+.|.+..|+.-.+...+.++. ....|.-=..++.-..++++|++.|++.++. .|+..-+..-+.-|..
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 999999999999999999988888886444 4556666666777788999999999999874 6777766666666655
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.8e-07 Score=93.27 Aligned_cols=95 Identities=17% Similarity=-0.049 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ 485 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (800)
|..+...|...|+.++|...|++..+.++. +...|+.+...+...|++++|...|++..+.... +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444444555555555555555555554332 4455555555555555555555555555544221 34445555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 003725 486 YGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 486 ~g~~~~a~~~~~~~~~~ 502 (800)
.|++++|.+.++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555544
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=2.5e-07 Score=82.30 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=8.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003725 445 IDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~~~ 465 (800)
.....+.|++..|...++...
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHhcccchHHHHHHHHHH
Confidence 333333344444443333333
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3.6e-07 Score=81.29 Aligned_cols=194 Identities=12% Similarity=0.007 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 267 YSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346 (800)
Q Consensus 267 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 346 (800)
...|.-+|...|++..|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++..+.. +.+....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444455555555555555555555543 3344455555555555555555555555555432 1233444444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTN--YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVK 424 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (800)
.|.+++|...|++....-.-+. .++..+.-+..+.|+.+.|.+.|++..+.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 5555555555555544322221 45555555555555555555555555544433 22233444444555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
.++.....+. ++..+.-..|..-...|+.+.+.+.=..+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555544433 34444444444444455544444443333
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=1.7e-05 Score=74.85 Aligned_cols=317 Identities=10% Similarity=0.049 Sum_probs=170.3
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH-HH
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD-IV 235 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l 235 (800)
.++.-...+.+.+..+|++.+|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+....+. +||-..-. --
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344455678888889999999999999988764 234445555567889999999999999998874 57754322 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003725 236 IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRL 315 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 315 (800)
...+.++|.+++|..-|+.+++... +..+- ..+..+.--.++- ......+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~--s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEP--SNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCC--Ccchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCch
Confidence 4567789999999999999988653 21110 0011100000000 1111223333445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 316 VEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFK 395 (800)
Q Consensus 316 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 395 (800)
..|+.....+.+.. +-|...|..-..+|...|++.+|+.-++...+........+..+...+...|+.+.++...++..
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55555555555532 23555555555566666666666655555555444444555555555556666666655555555
Q ss_pred HCCCCCCHHH-HH---HH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 003725 396 SMGIFLDQVC-YN---VI---------MDALCKLGEVEEAVKLFNEMEGRQIVPDVA---NYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 396 ~~~~~~~~~~-~~---~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~ 459 (800)
+.+ ||... |. .| +......++|.++.+-.+...+..+.-... .+..+-.++...|++.+|+.
T Consensus 251 Kld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred ccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 443 22211 10 00 111223344444444444444432221111 12223334444555555555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 460 LFKKMREMGHKP-DIKAYNVLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
.-.+.++. .| |..++.--..+|.-...++.|+.-|+...+.
T Consensus 329 qC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555543 22 2444444455555555555555555555544
No 95
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=3.4e-07 Score=91.24 Aligned_cols=150 Identities=13% Similarity=-0.020 Sum_probs=81.4
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHH
Q 003725 208 GEVDMVLVLYEEMKSVG-FSLN--QFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGY 284 (800)
Q Consensus 208 g~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 284 (800)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555321 1111 2345555556666666666666666666654 224556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 285 DLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361 (800)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 361 (800)
+.|++..+.. +.+..+|..+...+...|++++|.+.|+...+.. |+..........+...+++++|...+++..
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666543 3345556666666666666666666666666542 322211111122233455666666665433
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=5.4e-06 Score=86.26 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--HHHHHHHHHHHHhcCC
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIF-LD--QVCYNVIMDALCKLGE 418 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~ 418 (800)
..+...|++++|...+++..+..+.....+..+..++...|++++|...+++....... ++ ...|..+...+...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 33444444444444444444433332233344444444444444444444444332211 11 1223344555555566
Q ss_pred HHHHHHHHHHHH
Q 003725 419 VEEAVKLFNEME 430 (800)
Q Consensus 419 ~~~A~~~~~~~~ 430 (800)
+++|..++++..
T Consensus 202 ~~~A~~~~~~~~ 213 (355)
T cd05804 202 YEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHh
Confidence 666666665553
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=5e-06 Score=86.50 Aligned_cols=196 Identities=16% Similarity=0.035 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--cc----CHHHHHHHHH
Q 003725 478 VLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LE----NYSAMVDGYC 551 (800)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~l~~~~~ 551 (800)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..++++.+.... +. .|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33344445555555555555555443 33344444445555555555555555554333211 11 1334455555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChh-cH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 003725 552 EANHLEEAFQFFMTLSQRGFLMRSE-SC-C--KLLTNLLIEGYNNKAFKL--LDTMLKLDA--KPSKTTYDKVIGALCLA 623 (800)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~-~--~l~~~~~~~g~~~~A~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~ 623 (800)
..|++++|..++++.......+... .. . .++.-+...|..+.+..+ +........ ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 5566666666665554322211111 00 0 122222333332222222 111111110 11112223456677889
Q ss_pred CChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 624 GKIKWAHQVFDFLTRHGLI--------PDLISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
|+.+.|...++.+...... ..+.......-++.+.|+.++|.+.+.+.+..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999888752111 01222233334567899999999999998753
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-05 Score=79.72 Aligned_cols=407 Identities=15% Similarity=0.120 Sum_probs=249.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-hhcHHHHHHHHHhcCC
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH-GHNYSTIIQGLCENGR 279 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 279 (800)
.++.+..|+++.|...|-+.+... ++|-..|..-..+|+..|++++|++=-.+-++. .|+ ..-|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999988765 457778888899999999999988877666664 354 3578888888888999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHH
Q 003725 280 LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALI-----SGYCKCGNIIKAL 354 (800)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~ 354 (800)
+++|+..|.+-++.. +.|...++.+.+++... . .+.+.| .++..|..+. +.+...-.+..-+
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 999999999888874 66777888888877111 1 111111 1111111111 1111111111111
Q ss_pred HHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHH-HHHH------------HHHHHCCCCC-----------CHHHHH
Q 003725 355 SLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEA-IKKF------------KEFKSMGIFL-----------DQVCYN 407 (800)
Q Consensus 355 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a-~~~~------------~~~~~~~~~~-----------~~~~~~ 407 (800)
+.+ ..++..- .-...++.+.......+.- ...- .......... -..-..
T Consensus 153 ~~~----~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 153 EII----QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHh----hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 111 1110000 0001111111110000000 0000 0000000000 112245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HH
Q 003725 408 VIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNV-------LA 480 (800)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-------l~ 480 (800)
.+.++..+..+++.|.+.+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 56777778889999999999988765 36666777778899999988888777776665532 2223333 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC---HHHHHHHHHccCCHH
Q 003725 481 RGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---YSAMVDGYCEANHLE 557 (800)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 557 (800)
.++.+.++++.++..|.+.+..-..|+.. .+....+++.+..+. ....++.. ...-...+.+.|++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~-~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAER-KAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHHhccCHH
Confidence 35556778899999999877654443322 222333344333331 11111111 222366788899999
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 558 EAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLT 637 (800)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 637 (800)
.|+..|.+++.+++. |...|.....+|.+.|.+..|++-.+..++.+ ++....|..=..++....++++|.+.|++.+
T Consensus 376 ~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 78899999999999999999999988888774 3344445555566667788999999999999
Q ss_pred HCCCC
Q 003725 638 RHGLI 642 (800)
Q Consensus 638 ~~~~~ 642 (800)
+.++.
T Consensus 454 e~dp~ 458 (539)
T KOG0548|consen 454 ELDPS 458 (539)
T ss_pred hcCch
Confidence 87533
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=4.3e-05 Score=72.15 Aligned_cols=332 Identities=14% Similarity=0.027 Sum_probs=197.8
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 003725 263 HGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVY-SALI 341 (800)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 341 (800)
++.-.-.+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+-..|+.=+..+.+. .||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445566677777778888877777777653 223333334445667777777777777777764 4654322 2233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
..+.+.|.++.|..-|+.++...+... ...++.+-+....+ .......+..+...|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~--------------~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNG--------------LVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcc--------------hhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhh
Confidence 456777777777777777776654332 11111111110000 1112233445666788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKK 501 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (800)
|+.....+.+-.+- |+..|..-..+|...|++..|+.-++...+.... +..++.-+-..+...|+.+.++...++-++
T Consensus 174 ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 99999988876443 7888888888999999999998888877665433 566666677777888999888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh---cH
Q 003725 502 QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSE---SC 578 (800)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 578 (800)
. .||...... .|-+..++.+.++-.+ ...+.++|.++++..+...+..+..... .+
T Consensus 252 l--dpdHK~Cf~---~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 252 L--DPDHKLCFP---FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred c--CcchhhHHH---HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 5 566543321 2222222222211111 2233456666666666666655442222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003725 579 CKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL 641 (800)
Q Consensus 579 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 641 (800)
..+-.++...|++.+|++...+.+... +.|..++.--..+|.-...++.|+.-|+.+.+.+.
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 334445555666777777777666543 23355565566666666677777777776666543
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=5e-06 Score=76.63 Aligned_cols=314 Identities=12% Similarity=0.067 Sum_probs=185.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHH-HHHHHH
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDI-VIKALC 240 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~ 240 (800)
+++.+..+.+..++.+|++++..-.+.+ +.+....+.|...|....++..|...++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666677789999999988777664 236777888888999999999999999998764 355544442 235566
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhc--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHN--YSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (800)
+.+.+.+|+++...|... ++... ...-.....+.+|+..+..++++....| +..+.+...-...+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788999999998887652 22222 2222223446788888888888877544 445555555666789999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHH-----HHHHHHHHhcCCHHHHHHHHHH
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVV-----SVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
.+-|+...+.+--.....|+.-+ +..+.|+++.|+++..+++++|++...-+ ...+.+ ...|+. ..
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~---- 234 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LV---- 234 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HH----
Confidence 99999988775455566777554 44566899999999999988876532000 000000 000000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 394 FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGR-QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD 472 (800)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 472 (800)
|...+ -+..+|.-...+.+.|+++.|.+.+-.|..+ ....|+.|...+.-.- ..+++.+..+-+.-+++.++ -.
T Consensus 235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 00000 1223444444455556666666665555432 1223444443332211 12334444444444444333 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 473 IKAYNVLARGLAQYGSVRDALDCLKY 498 (800)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (800)
..||..++-.||++.-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 44555555556666656555555544
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.91 E-value=0.00019 Score=76.89 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=140.2
Q ss_pred ccCChHHHHHHHHHccCCCCccCHHHHHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 003725 171 SERMFDQALNVLFQTDRPGFVWSKFTCNFFMN--QLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEA 248 (800)
Q Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 248 (800)
..+++..|+....+..+.. |+... ...+. .+.+.|+.++|..+++.....+. .|..|...+-..|...|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 3467778888777766652 44322 22233 45788899999988888766543 3777888888888889999999
Q ss_pred HHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHH
Q 003725 249 FDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSR----------LVEA 318 (800)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A 318 (800)
..+|+..... .|+......+..+|.+.+++.+-.+.--++.+. .+-++..+=+++..+...-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999888775 467777777788888888777665555555443 34455555555555443211 2335
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 319 ESVLLRMKQLR-VTPDKYVYSALISGYCKCGNIIKALSLHGE-MTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFK 395 (800)
Q Consensus 319 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 395 (800)
.+.++.+.+.+ ..-+..-...-...+-..|++++|.+++.. ..+.-...+ ...+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 56666666543 111222222223445567788888888743 333222222 444566677777788888887777777
Q ss_pred HCCCC
Q 003725 396 SMGIF 400 (800)
Q Consensus 396 ~~~~~ 400 (800)
..+..
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 76643
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=4.1e-05 Score=90.72 Aligned_cols=332 Identities=12% Similarity=0.004 Sum_probs=178.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC--C----CCC--HHHHHHHHHHHH
Q 003725 239 LCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG--I----PLN--AFAYTAVIREFC 310 (800)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~----~~~--~~~~~~li~~~~ 310 (800)
+...|+++.+..+++.+.......+..........+...|+++++..++....+.- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44456666666666554221111222233344444556677777777766654320 0 111 112222334445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCch--HHHHHHHHHHHh
Q 003725 311 QNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLHGEMTSIG----IKTN--YVVSVILKCLCQ 380 (800)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~--~~~~~l~~~~~~ 380 (800)
..|++++|...+++....-...+. ...+.+...+...|++++|...+++..... .... .....+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677777777777776542111121 233455556667777777777777665321 1111 344455666777
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 003725 381 MGKTSEAIKKFKEFKSM----GIF--L-DQVCYNVIMDALCKLGEVEEAVKLFNEMEGR----QIVPDVANYTTVIDGYI 449 (800)
Q Consensus 381 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~ 449 (800)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 77777777777665432 211 1 1233444555666678888887777776432 11112334444556677
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 003725 450 LRGKLVDAIGLFKKMREMG--HKPDIK--AY--NVLARGLAQYGSVRDALDCLKYMKKQGVKPNV---ITHNMIIEGLCT 520 (800)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 520 (800)
..|++++|...+.+..... ...... .. ...+..+...|+.+.|...+............ .....+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7788888877777764321 111110 11 11123344567777777777665432211111 113455666777
Q ss_pred cCCHHHHHHHHHHHHhcc---C-c----cCHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003725 521 SGRVKEARAFFDDDLKEK---C-L----ENYSAMVDGYCEANHLEEAFQFFMTLSQRG 570 (800)
Q Consensus 521 ~g~~~~a~~~~~~~~~~~---~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (800)
.|+.++|...+++.+... . . .....+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888888887554421 1 1 124455667778888888888888887654
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=3.9e-07 Score=89.19 Aligned_cols=252 Identities=17% Similarity=0.109 Sum_probs=127.2
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
++-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344566788888886665 333332334555666778888888876544 3443332 46665555554444333444
Q ss_pred hHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 246 EEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 246 ~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
+.++.-+++....... .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555544443333222 12222233334455567777777766532 2455566667777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 325 MKQLRVTPDKYVYSALISGYCK----CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIF 400 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 400 (800)
|.+.+ .|. +...+..++.. .+.+.+|..+|+++.+. ..
T Consensus 157 ~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-----------------------------------~~ 198 (290)
T PF04733_consen 157 MQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-----------------------------------FG 198 (290)
T ss_dssp HHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-----------------------------------S-
T ss_pred HHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----------------------------------cC
Confidence 76642 232 22233333221 22455555555555433 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 003725 401 LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL-VDAIGLFKKMREM 467 (800)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 467 (800)
+++.+.+.+..++...|++++|.+++.+....+.. +..+...++......|+. +.+.+++.++...
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34455555555555556666666665555544332 444555555555555554 4444555555443
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.6e-06 Score=86.22 Aligned_cols=268 Identities=15% Similarity=0.074 Sum_probs=158.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 448 YILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 44566666666666666555332 55566666666666666666666666666653 44555666666666666666666
Q ss_pred HHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH-HhCCC
Q 003725 528 RAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM-LKLDA 606 (800)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 606 (800)
.+.+++.+..+....|..... ..++...- +-.++...+.. ..++|-++ ...+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~---~~~~~~~~----------~s~~~~~~l~~-------------i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAG---ENEDFENT----------KSFLDSSHLAH-------------IQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHHHHhCccchhccccC---ccccccCC----------cCCCCHHHHHH-------------HHHHHHHHHHhCCC
Confidence 666665555432221111000 00000000 00112222221 12222222 23343
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 003725 607 KPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVL-YTI 685 (800)
Q Consensus 607 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~ 685 (800)
.+|+.+...|.-.|--.|++++|.+.|+.++...+. |...||-|...++...+.++|++.|++.++ +.|.-+- ...
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN 503 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN 503 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh
Confidence 467777788888888999999999999999987666 888999999999999999999999999987 6887543 233
Q ss_pred HHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 003725 686 LCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIV 762 (800)
Q Consensus 686 ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 762 (800)
|-.+|.. .|.+.+|...|-..+.+.-.-. =-..+..++..+|.+|=.++.-.++.|-+.+.
T Consensus 504 lgIS~mN---------------lG~ykEA~~hlL~AL~mq~ks~-~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 504 LGISCMN---------------LGAYKEAVKHLLEALSMQRKSR-NHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhh---------------hhhHHHHHHHHHHHHHhhhccc-ccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 4445544 5668888888877664321100 00112222456777777777777776655443
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=3.5e-05 Score=91.24 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKL----DAKP-SKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
.+..++...|+.++|...+++.... +... ...+...+..++...|+.++|...+.++.+
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555566666666666655442 1111 122344555566666777777766666665
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=8.6e-07 Score=86.79 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=100.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcC
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDAL----CKLG 417 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 417 (800)
..+...|++++|++++... ..-......+.++.+.++++.|.+.++.|.+.. .| .+...+..++ .-.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 3444556666666655431 111444555666666666666666666666542 22 2333344433 3344
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 003725 418 EVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSV-RDALDCL 496 (800)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 496 (800)
.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.. +..++..++......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 789999999998765 5568899999999999999999999999998876543 677777788887888887 6778888
Q ss_pred HHHHHC
Q 003725 497 KYMKKQ 502 (800)
Q Consensus 497 ~~~~~~ 502 (800)
.++.+.
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 888875
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=2.2e-08 Score=61.38 Aligned_cols=33 Identities=42% Similarity=0.729 Sum_probs=30.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 735 GLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 735 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
|+.||..+||+||++||+.|++++|+++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677799999999999999999999999999983
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=7.1e-06 Score=83.14 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHH
Q 003725 309 FCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAI 388 (800)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 388 (800)
+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+.+..+..+....++..+.-.|...|.-.+|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 344555555555555555442 1244455555555555555555555555555544444455555555555555555555
Q ss_pred HHHHHHHHC
Q 003725 389 KKFKEFKSM 397 (800)
Q Consensus 389 ~~~~~~~~~ 397 (800)
+.+++....
T Consensus 374 ~~L~~Wi~~ 382 (579)
T KOG1125|consen 374 KMLDKWIRN 382 (579)
T ss_pred HHHHHHHHh
Confidence 555555443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=4.3e-05 Score=75.98 Aligned_cols=131 Identities=8% Similarity=-0.014 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc---CC----HHHHHH
Q 003725 317 EAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM---GK----TSEAIK 389 (800)
Q Consensus 317 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~ 389 (800)
++..+++.+.+.. +-+..+|+...-++...|+++++++.++++++.++....+|+....++.+. |. .++.++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 3444444444332 123444444444444445555555555555554444444444433333322 11 123444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 390 KFKEFKSMGIFLDQVCYNVIMDALCKL----GEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL 450 (800)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 450 (800)
...++....+. |...|+.+...+... +...+|.+.+.+....++. +......|++.|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 44444444332 445555555555442 2234455555555443322 44555555555553
No 110
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=6.5e-05 Score=74.74 Aligned_cols=204 Identities=9% Similarity=0.041 Sum_probs=110.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH--HHHH
Q 003725 312 NSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCG-NIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKT--SEAI 388 (800)
Q Consensus 312 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~ 388 (800)
.++.++|+.+..++.+.. +-+..+|+.....+...| ++++++..++++...+++...+|.....++.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 345566666666666542 112334444444444445 456666666666666555555555554444444442 4556
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHH
Q 003725 389 KKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILR---GKL----VDAIGLF 461 (800)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~~~ 461 (800)
.+++++.+.... +..+|+....++...|+++++++.++++.+.++. +...|+.....+.+. |.. ++++...
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 666666655443 5556666666666666666777777776665544 555555555444333 222 3455555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 462 KKMREMGHKPDIKAYNVLARGLAQY----GSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCT 520 (800)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (800)
.+++...+. |...|+-+...+... +...+|...+.+..+.+ +.++..+..|++.|+.
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555554332 555666666555542 23345666666655543 3345556666666654
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.6e-05 Score=73.40 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=120.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
+..|...|+++.+....+...... ..+...++.+++...+++..+.++. +...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL---------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc---------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345777787777654443111111 0122356778888888888887765 788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPSKTTYDKVIGAL-CLAGK--IKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 671 (800)
...+++..+.. +.+...+..+..++ ...|+ .++|..+++++.+.++. +...+..+...+.+.|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 45677788888764 67777 59999999999998777 8889999999999999999999999999
Q ss_pred HHcCCCCCHHHH
Q 003725 672 KLRGIKPDVVLY 683 (800)
Q Consensus 672 ~~~g~~pd~~~~ 683 (800)
++. ..|+...+
T Consensus 171 L~l-~~~~~~r~ 181 (198)
T PRK10370 171 LDL-NSPRVNRT 181 (198)
T ss_pred Hhh-CCCCccHH
Confidence 986 45665443
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.1e-07 Score=58.26 Aligned_cols=33 Identities=39% Similarity=0.869 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 639 HGLIPDLISYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 639 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 671 (800)
+|+.||..+|++||++||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367888888888888888888888888888887
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=2.9e-05 Score=80.99 Aligned_cols=221 Identities=10% Similarity=0.021 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003725 435 VPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMI 514 (800)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (800)
+|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444556667777788888888877654 3555677778888888888888777763 7888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
.+......-+++|.++++..... .-..+.......++++++.+.|+.-.+.++- ...+|.....+..+.++.+.|
T Consensus 464 GDv~~d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHH
Confidence 77776666778888877733222 1111222223467888888888887776543 567788888888888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+.|...+... +.+...||.+-.+|.+.|+-.+|...+.++.+.+.. +...|...+....+.|.+++|++.+.++.+
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99888887654 445667999999999999999999999999987644 667787777778899999999999988874
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=8.8e-05 Score=82.84 Aligned_cols=225 Identities=13% Similarity=0.034 Sum_probs=110.4
Q ss_pred ChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHH
Q 003725 86 DPGAALTFFELLK-ARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDA 164 (800)
Q Consensus 86 ~~~~A~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (800)
.|..|..|-..++ .+| ++..|-..+......+..++|+++.++++...+...-+ ---.+|.+
T Consensus 1440 ~pesaeDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee--------------EKLNiWiA 1502 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE--------------EKLNIWIA 1502 (1710)
T ss_pred CCcCHHHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH--------------HHHHHHHH
Confidence 4445555444443 121 33444444444445566666666666665553221100 01234455
Q ss_pred HHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLAR 244 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 244 (800)
+++.-..-|.-+...++|+++.+.. .....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.++++
T Consensus 1503 ~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1503 YLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH
Confidence 5555555555555555666555432 12334555566666666666666666666433 22344555566666666666
Q ss_pred hhHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003725 245 FEEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLL 323 (800)
Q Consensus 245 ~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (800)
-+.|..+++.+++.=.. -........+..-.+.|+.+.+..+|+..... .|-....|+..++.-.+.|+.+.+..+|+
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 56666666555543111 01222333333344455555555555555544 23344455555555555555555555555
Q ss_pred HHHhCCCC
Q 003725 324 RMKQLRVT 331 (800)
Q Consensus 324 ~m~~~~~~ 331 (800)
+....++.
T Consensus 1659 Rvi~l~l~ 1666 (1710)
T KOG1070|consen 1659 RVIELKLS 1666 (1710)
T ss_pred HHHhcCCC
Confidence 55554443
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.0023 Score=64.84 Aligned_cols=176 Identities=13% Similarity=0.043 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 454 LVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKP-NVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 454 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+.....++++......--..+|..+++...+....+.|..+|.++.+.+..+ +..+.+++++.+| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555554433222122345555555555666666666666666655555 4445555555443 345566666666
Q ss_pred HHHhcc-Ccc-CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC---
Q 003725 533 DDLKEK-CLE-NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMR--SESCCKLLTNLLIEGYNNKAFKLLDTMLKLD--- 605 (800)
Q Consensus 533 ~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 605 (800)
--++.- +.+ --...++.+...++-..|..+|++....+..++ ...|..++.--..-|+...++++-+++...-
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 434322 222 234455555666666666666666666633332 2456666666666677777776666655431
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHH
Q 003725 606 AKPSKTTYDKVIGALCLAGKIKWAH 630 (800)
Q Consensus 606 ~~~~~~~~~~l~~~~~~~g~~~~A~ 630 (800)
..+....-..+++.|.-.+.+..-.
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccH
Confidence 1111122234455565555544333
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=0.00012 Score=81.86 Aligned_cols=186 Identities=16% Similarity=0.014 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc
Q 003725 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM 381 (800)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (800)
|.++++.-..-|.-+...++|+++.+.. ..-..|..|...|.+.+.+++|.++++.|.+.--....+|...+..+.+.
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 3334433333344444444444444321 11223344444444444444444444444433222224444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 382 GKTSEAIKKFKEFKSMGIF-LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGL 460 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (800)
.+.+.|..++.++.+.-+. -......-.+..-.+.|+.+.+..+|+......++ -...|+..|+.-.+.|+.+.+..+
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHH
Confidence 4444444444444332111 01122223333344555555555555555544322 345555555555555555555555
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 003725 461 FKKMREMGHKPD--IKAYNVLARGLAQYGSVR 490 (800)
Q Consensus 461 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 490 (800)
|++....++.|- -..|...+..--..|+-+
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 555555544432 223444444434444433
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=4.8e-05 Score=79.45 Aligned_cols=239 Identities=13% Similarity=0.053 Sum_probs=186.1
Q ss_pred CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003725 260 VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSA 339 (800)
Q Consensus 260 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 339 (800)
.+|-...-..+...+.+.|-...|..+++++. .|..+|.+|+..|+..+|..+..+-.+. +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 45566667778888999999999999998654 5677899999999999999998888773 789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 340 LISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEV 419 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 419 (800)
+.+.....--+++|.++.+..... +-..+.....+.++++++.+.|+.-.+...- -..+|-.+.-+..+.+++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 999888888889999998776443 2233333344578999999999887766543 466787888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 420 EEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
..|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+.. +...|-..+-...+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999876433 5689999999999999999999999999988744 5555666666778999999999999988
Q ss_pred HHCCC-CCCHHHHHHHHHHH
Q 003725 500 KKQGV-KPNVITHNMIIEGL 518 (800)
Q Consensus 500 ~~~~~-~~~~~~~~~l~~~~ 518 (800)
.+... .-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 75421 12444555555443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=2.3e-05 Score=72.36 Aligned_cols=128 Identities=9% Similarity=0.119 Sum_probs=80.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH-hccCCCCCCC
Q 003725 623 AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV-VLYTILCDAY-SKINKRGSSS 700 (800)
Q Consensus 623 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~ll~~~-~~~~~~~~~~ 700 (800)
.++.+++...++...+.++. |...|..+...|...|++++|...|++.... .|+. ..+..+..++ ...|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g------ 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAG------ 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC------
Confidence 45556666666666655544 6667777777777777777777777776653 4433 3333333332 2211
Q ss_pred CCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003725 701 SPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIY 778 (800)
Q Consensus 701 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 778 (800)
....++|.+++++..+.+.. +..++..++..+.+.|++++|+..|+++.+. .+|+..-+
T Consensus 123 -------~~~~~~A~~~l~~al~~dP~-----------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 123 -------QHMTPQTREMIDKALALDAN-----------EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred -------CCCcHHHHHHHHHHHHhCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 11135677777766654433 7778888888999999999999999999864 45555443
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0058 Score=66.01 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=137.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCCh
Q 003725 203 QLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKAL--CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRL 280 (800)
Q Consensus 203 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 280 (800)
-....+++..|+.....+.+. .||. .|..+++++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 345677888888888888765 3554 344444544 4788899999888887665544 778888888888889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------H
Q 003725 281 DVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCG-N---------I 350 (800)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~---------~ 350 (800)
++|..+++...+. -|+......+..+|.+.+.+.+-.+.=-++-+. .+.+...+=++++.+...- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999888876 455777777788888887776544443333332 2223343333444433221 1 1
Q ss_pred HHHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 351 IKALSLHGEMTSIGIKTN--YVVSVILKCLCQMGKTSEAIKKF-KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFN 427 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (800)
.-|.+.++.+.+.+.+.. .-.......+...|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 234445555554441111 22333344455666777777776 333333333344444555666667777777777777
Q ss_pred HHHhCCC
Q 003725 428 EMEGRQI 434 (800)
Q Consensus 428 ~~~~~~~ 434 (800)
++..+|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 7666643
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=1.7e-05 Score=69.16 Aligned_cols=116 Identities=9% Similarity=-0.089 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003725 561 QFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHG 640 (800)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 640 (800)
.++++.++.+ +..+......+...|++++|...++..+... +.+...+..+..++...|++++|...|+.+...+
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445554443 3345567788888999999999999988776 5677888899999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003725 641 LIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYT 684 (800)
Q Consensus 641 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 684 (800)
+. +...+..+..++.+.|++++|...|++.++ +.|+...+.
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 65 888899999999999999999999999987 467765554
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=8e-05 Score=72.06 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---H
Q 003725 297 LNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD----KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---Y 369 (800)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 369 (800)
.....+..+...+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.+..+... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345667777777778888888888888777643 22 13556667777778888888888887776655433 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHC
Q 003725 370 VVSVILKCLCQM--------GKTSEAIKKFKEFKSM 397 (800)
Q Consensus 370 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~ 397 (800)
++..+..++.+. |+.++|.+.++++...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 344444444433 4445555555554443
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00036 Score=64.00 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=118.8
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
++-+.-.|.+..++..-....... .+...--.+.++|...|++..... +++... .|.......+...+..-++-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 345555677877777655544332 344455556677888777654433 333221 23444444443333334443
Q ss_pred hHHH-HHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 246 EEAF-DVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 246 ~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
++-+ ++.+.+.......+......-...|+..|++++|++.+.... +......=+..+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 444555544434343444444556778888888888776521 233444445566777888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 325 MKQLRVTPDKYVYSALISGYCK----CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSM 397 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 397 (800)
|.+. .+..|.+.|..++.+ .+.+..|.-+|++|.+.-.+...+.+-...++...|++++|..+++.....
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8874 356677766666654 345666666666666543333244444444444444444444444444443
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00013 Score=81.06 Aligned_cols=241 Identities=9% Similarity=-0.002 Sum_probs=156.5
Q ss_pred CCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003725 364 GIKTN--YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANY 441 (800)
Q Consensus 364 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (800)
+..|. ..+..++..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+.+.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 34444 78888888888889999999888876665433 233333344466666665554444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 442 TTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (800)
.++.......++.-...+...|... .-+..++..+..+|-+.|+.++|..+++++++.. +-|+.+.+.+...|...
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2233333334443333444444443 2245578889999999999999999999999987 77888999999999999
Q ss_pred CCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 522 GRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601 (800)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 601 (800)
++++|.+++.+.+ ..|...+++..+.++|.++....+. +...+ ..+.+.+
T Consensus 164 -dL~KA~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~ki 213 (906)
T PRK14720 164 -DKEKAITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERKV 213 (906)
T ss_pred -hHHHHHHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHHH
Confidence 9999999988543 3367777888999999988877544 22222 2222333
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003725 602 LKL-DAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFC 656 (800)
Q Consensus 602 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 656 (800)
... +..--..++.-+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222 21222334444555666677777777777777776555 5555556666554
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.0045 Score=62.85 Aligned_cols=422 Identities=11% Similarity=0.080 Sum_probs=229.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 226 SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (800)
+-|+.+|..||+-+..+ .++++.+.++++... ++-....|..-|..-.+.++++....+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 46888999999877655 899999999998764 2335678888899989999999999999988776 3456666666
Q ss_pred HHHHHh-cCChHH----HHHHHHHHH-hCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCchH
Q 003725 306 IREFCQ-NSRLVE----AESVLLRMK-QLRVTPDK-YVYSALISG---------YCKCGNIIKALSLHGEMTSIGIKTNY 369 (800)
Q Consensus 306 i~~~~~-~g~~~~----A~~~~~~m~-~~~~~p~~-~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~ 369 (800)
+.--.+ .|+... ..+.|+-.. +.|+.+-. ..|+..+.- |..+.+++...+++.++...-+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm---- 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM---- 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc----
Confidence 654433 233322 223333333 33433322 223333322 1222334445555555544322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHH--------
Q 003725 370 VVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEG--RQIVPDVA-------- 439 (800)
Q Consensus 370 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-------- 439 (800)
+++++..+-|...... .|..|-.-++. -+...+-.|.++++++.. +|......
T Consensus 169 ------------~nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 169 ------------HNLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred ------------ccHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 2222222222221111 11111111111 122234445555555432 12111111
Q ss_pred -------HHHHHHHHHHhcC------CH--HHHHHHHHHH-HHcCCCCCHHHH-HH----HHHHHHhcCC-------HHH
Q 003725 440 -------NYTTVIDGYILRG------KL--VDAIGLFKKM-REMGHKPDIKAY-NV----LARGLAQYGS-------VRD 491 (800)
Q Consensus 440 -------~~~~li~~~~~~g------~~--~~A~~~~~~~-~~~~~~p~~~~~-~~----l~~~~~~~g~-------~~~ 491 (800)
.|-.+|..=-.++ .. ....-.+++. .-.+..|+..-. .. .-+.+...|+ .++
T Consensus 232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 1222222111111 00 0111111111 112222322110 00 1112222333 455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhccC---ccCHHHHHHHHHccCCHHHHHHHHHH
Q 003725 492 ALDCLKYMKKQGVKPNVITHNMIIEGLCTS---GRVKEARAFFDDDLKEKC---LENYSAMVDGYCEANHLEEAFQFFMT 565 (800)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (800)
+..+++..++.-..-+..++..+...-... +..+.....+++.+...+ .-.|..+++.-.+..-...|..+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 666666555432222333333332211111 124445555554333222 22388889988899999999999999
Q ss_pred HHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003725 566 LSQRGFLM-RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPD 644 (800)
Q Consensus 566 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 644 (800)
+.+.+..+ ...+.++++. |...++..-|..+|+--++.- ..++.--...++-+...++-+.|+.+|++....++.||
T Consensus 392 aR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 392 AREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 99988776 3333444444 555788999999999766542 34455556777888899999999999999998755554
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 645 --LISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 645 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
...|..++.--..-|+...++++-+++...
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 578999999888999999999998887653
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=9.6e-05 Score=71.50 Aligned_cols=186 Identities=10% Similarity=0.032 Sum_probs=116.6
Q ss_pred cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HH
Q 003725 262 LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA---FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDK--YV 336 (800)
Q Consensus 262 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~ 336 (800)
.....+..+...+...|++++|...++++.+.. +.+. .++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 455677888888999999999999999998763 2222 46778888999999999999999999875322111 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003725 337 YSALISGYCKC--------GNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNV 408 (800)
Q Consensus 337 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 408 (800)
+..+..++... |++++|.+.++.+....+........+..... .... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 55555556554 78899999999998776554322211111100 0000 0 001123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 409 IMDALCKLGEVEEAVKLFNEMEGRQI--VPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+...|.+.|++++|...++....... +.....+..+...+...|++++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666777777776666665421 11235566666666666666666666666554
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=0.00017 Score=66.22 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 372 SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILR 451 (800)
Q Consensus 372 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 451 (800)
......+...|+-+....+..+...... .|....+..+....+.|++..|+..+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 3344445555555555555444332222 244455556777777777777777777776653 34777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 452 GKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFF 531 (800)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (800)
|+++.|..-|.+..+.... +...++.|...+.-.|+.+.|..++......+ .-+..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777765322 45566777777777777777777777777664 335566666666777777777777766
Q ss_pred H
Q 003725 532 D 532 (800)
Q Consensus 532 ~ 532 (800)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 5
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=0.00017 Score=66.22 Aligned_cols=153 Identities=16% Similarity=0.071 Sum_probs=68.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 272 QGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNII 351 (800)
Q Consensus 272 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 351 (800)
..+...|+-+....+....... .+.+.......+....+.|++.+|+..+++..... ++|...|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3333444444444444333222 12233333344444455555555555555544432 344555555555555555555
Q ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 352 KALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFN 427 (800)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (800)
.|..-|.+..+..+..+...+.+...+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++..
T Consensus 152 ~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555544443333344444444444444444444444444433322 23333334444444555555554443
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00059 Score=62.70 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 003725 372 SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL- 450 (800)
Q Consensus 372 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 450 (800)
......|++.|++++|++..+... +......=+..+.+..+++-|.+.++.|.+- -+..+.+-|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL 182 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence 334445566666666666655421 2222233344455666777777777777764 245566656655553
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 451 ---RGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 451 ---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
.+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++....+. ..++.+...++.+-.-.|...++
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHH
Confidence 34577777778777653 45677777777777777888888888888777764 44566666555555555555444
Q ss_pred H
Q 003725 528 R 528 (800)
Q Consensus 528 ~ 528 (800)
.
T Consensus 261 ~ 261 (299)
T KOG3081|consen 261 T 261 (299)
T ss_pred H
Confidence 3
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.00027 Score=78.58 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=137.6
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHH
Q 003725 192 WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQF-TYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTI 270 (800)
Q Consensus 192 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (800)
.+...+..|+..+...+++++|.++.++..+. .|+.. .|-.+.-.+.+.++.+++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 35678888999998999999999999877664 35543 333344456667776666555 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNI 350 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 350 (800)
......++.....+...+... .-+..++..+..+|-+.|+.++|..+++++.+.. +-|..+.+.+...|+.. ++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222223332222333333332 2345577778888888888888888888888876 44777788888888888 88
Q ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 351 IKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEME 430 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (800)
++|.+++.+.... +...+++..+.+++.++....+. +. +.-..+.+.+.
T Consensus 166 ~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~-d~----------------d~f~~i~~ki~ 214 (906)
T PRK14720 166 EKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSD-DF----------------DFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcc-cc----------------hHHHHHHHHHH
Confidence 8888888776653 44555666666666666554322 11 11122222222
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003725 431 GR-QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484 (800)
Q Consensus 431 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (800)
.. |..--..++-.+-..|-..++++++..+++.+++...+ |..+..-++..|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11 11112333444444455555566666666666554332 4444444444443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00038 Score=76.76 Aligned_cols=147 Identities=9% Similarity=0.005 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 331 TPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIM 410 (800)
Q Consensus 331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 410 (800)
..+...+..|.......|.+++|..+++...+..+....+...++.++.+.+++++|+..+++.....+. +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 4467788888888888888888888888888877766688888888888888888888888888877665 566677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003725 411 DALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLA 480 (800)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 480 (800)
.++.+.|++++|..+|+++...+.. +..++..+...+...|+.++|...|++..+.. .|....|+.++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8888888888888888888874332 56778888888888888888888888887652 23445555544
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00024 Score=71.15 Aligned_cols=83 Identities=17% Similarity=0.044 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 609 SKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 609 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
|+.........+.+.|+.++|.+.++.++...+. ....+-.+..+|.+.|+..+|+..+++.... .+-|...|..|..
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAq 416 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQ 416 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHH
Confidence 3333444445555556666666666555554322 2444455555555666666666665555543 2444555555555
Q ss_pred HHhcc
Q 003725 689 AYSKI 693 (800)
Q Consensus 689 ~~~~~ 693 (800)
+|...
T Consensus 417 ay~~~ 421 (484)
T COG4783 417 AYAEL 421 (484)
T ss_pred HHHHh
Confidence 55553
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=4.2e-05 Score=66.73 Aligned_cols=108 Identities=13% Similarity=0.002 Sum_probs=77.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCL 622 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (800)
+..+...+...|++++|...|+.+...++. +...+..+..++...|++++|+..|++.++.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444555666777777777777777766554 66677777777888888888888888887765 4566777778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 623 AGKIKWAHQVFDFLTRHGLIPDLISYTMLIH 653 (800)
Q Consensus 623 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 653 (800)
.|++++|...|+...+..+. +...|.....
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 88888888888888875444 4555544433
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.0016 Score=65.42 Aligned_cols=200 Identities=17% Similarity=0.111 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHhCC--CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 245 FEEAFDVLNEMNKAG--VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 245 ~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
+.++...-+.+...+ -.|+...+...+.+......-..+..++.+..+. -.........-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 344444444443322 1233444444444444333333333333333331 12233333444455677777888777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 323 LRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLD 402 (800)
Q Consensus 323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 402 (800)
+.+...- +-|...+......+.+.++..+|.+.++.+....+........+..++.+.|+..+|+.+++......+. |
T Consensus 330 ~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-d 407 (484)
T COG4783 330 QPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-D 407 (484)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-C
Confidence 7776642 2344444555677777777888877777777765544466666777777777777777777777665544 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 403 QVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
+..|..|..+|...|+..++..-..+ .|...|++++|...+....+.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 77777777777777776666554443 344567777777777766554
No 134
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=0.0045 Score=64.58 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=141.3
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHhcCC
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN-GIPL--------NAFAYTAVIREFCQNSR 314 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~ 314 (800)
.+++|.+..+. .|.+..|..+.......-.++.|...|-+...- |++. +...-.+-+.+ --|+
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGE 749 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcc
Confidence 34555555443 588889999988888888888887777655432 2211 11111122222 3588
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHH
Q 003725 315 LVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKF 391 (800)
Q Consensus 315 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 391 (800)
+++|+++|-+|.... ..|..+.+.|||-...++++.-.. +.... .++..+...+.....+++|.+.|
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876542 236777888998887777654221 11111 68889999999999999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 392 KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471 (800)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (800)
..-... ...+.++.+..++++-+.+-..+.+ +....-.+..++...|.-++|.+.|-+... |
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p 881 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P 881 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----c
Confidence 654321 2356777777777766665555433 556677788899999999999887755432 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 472 DIKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
...+..|...+++.+|.++-+..
T Consensus 882 -----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 882 -----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 22456677888888888876654
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=0.00055 Score=75.52 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=165.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 228 NQFTYDIVIKALCKLARFEEAF-DVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 306 (800)
++.....+=.+...-|..++|- +++.++.+ ++....+.....+++.-+..+.. ..+.++.++-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 3444444445556667776663 44444432 22333333333333333333333 3566789999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHH
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPD-KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTS 385 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 385 (800)
....+.|++++|+.+++...+. .|| ......++..+.+.+++++|+...++.....+........+..++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH
Confidence 9999999999999999999986 454 5567788899999999999999999999988887799999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 386 EAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (800)
+|..+|+++...+.. +..++..+..++.+.|+.++|...|+...+.. .+....|+..+. +...-..+++.+.
T Consensus 172 ~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 999999999985443 57888899999999999999999999998752 234455555443 3344455565553
Q ss_pred HcC----CCCCHHHHHHHHHHHHh
Q 003725 466 EMG----HKPDIKAYNVLARGLAQ 485 (800)
Q Consensus 466 ~~~----~~p~~~~~~~l~~~~~~ 485 (800)
-.+ ..........++.-+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhh
Confidence 332 22233445555554443
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=5.3e-05 Score=65.82 Aligned_cols=122 Identities=14% Similarity=0.031 Sum_probs=93.4
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003725 562 FFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL 641 (800)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 641 (800)
.++++....+. +......+...+...|+.++|.+.++.+...+ +.+...+..+...+...|++++|..+++...+.++
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444333 33455667777888899999999998888765 45777888888999999999999999999888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 642 IPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 642 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
. +...+..+..+|...|++++|...|++.++. .|+...+..+..
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 4 6777888888999999999999999999874 677665544443
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0026 Score=58.19 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHccC---CC-CccCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCChh
Q 003725 173 RMFDQALNVLFQTDR---PG-FVWSKFT-CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIV-IKALCKLARFE 246 (800)
Q Consensus 173 ~~~~~A~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~ 246 (800)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++++..+ + |...-...+ .-.+--.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 455555555555432 12 2233322 233333444455555555555555433 1 222111111 11122245555
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 247 EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMK 326 (800)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (800)
+|.++|+.+++.+ +.|..++.--+...-..|+--+|++-+.+..+. +..|..+|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 5555555555443 223344444444444444444444444444443 33444455555555555555555554444444
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0027 Score=58.03 Aligned_cols=187 Identities=11% Similarity=0.083 Sum_probs=110.8
Q ss_pred CChhHHHHHHHHHH---hCC-CCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchH
Q 003725 85 KDPGAALTFFELLK---ARG-FRHNV-HTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFY 159 (800)
Q Consensus 85 ~~~~~A~~~f~~~~---~~~-~~~~~-~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (800)
+++++-++++..+. ..| ..++. ..|..++-+....|+..-|...+..+..+.+. +.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-------------------S~ 86 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-------------------SK 86 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-------------------Ch
Confidence 56777777777765 334 45554 33444444445567777777777666555321 12
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKAL 239 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 239 (800)
++-..-.-.+-..|++++|.++|+.+.+.+ +.|..++-.-+..+-..|+--+|++-+.+..+. +..|...|.-+...|
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIY 164 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 222222223334577777777777777765 456666666666666667666666666665544 456777777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 003725 240 CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENG---RLDVGYDLLLKWSEN 293 (800)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 293 (800)
...|++++|.-.++++.-.. +.++..+..+...+.-.| +++.+.+++.+..+.
T Consensus 165 ~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77777777777777776543 223344444444444333 444556666666654
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7e-06 Score=51.42 Aligned_cols=35 Identities=43% Similarity=0.878 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNI 775 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 775 (800)
.+||+++.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00039 Score=60.31 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (800)
+..+...+...|++++|..+++.....+. .+...+..+...|...|++++|...|+...
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333344444444444443333321 123333333334444444444444444433
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00027 Score=71.75 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=97.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLA 623 (800)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (800)
..|+..+...++++.|+++++++.+.. +.....++..+...++..+|++++.+.++.. +.+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677888888888887775 2345557777777788888888888888654 44666666677788999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 624 GKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
++++.|..+.+++.+..+. +..+|..|..+|.+.|++++|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999987555 778999999999999999999999998863
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.6e-05 Score=49.79 Aligned_cols=33 Identities=48% Similarity=0.902 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 679 (800)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999887
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00082 Score=58.91 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 409 IMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFK 462 (800)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (800)
+...+...|++++|+..++..... ......+....+.|.+.|++++|...|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444445555555544432221 1122333334444445555555544444
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=2.8e-05 Score=48.20 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEP 773 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 773 (800)
.+|+.++++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.0013 Score=57.75 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=61.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHH
Q 003725 312 NSRLVEAESVLLRMKQLRVTPD---KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTS 385 (800)
Q Consensus 312 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 385 (800)
.++...+...++.+.+... .+ ....-.+...+...|++++|...|+.+......+. .+...+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555321 11 12222334555566666666666666665553333 33444556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 386 EAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNE 428 (800)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (800)
+|+..++...... .....+....++|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666665532222 2334455666677777777777777665
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.82 E-value=0.00059 Score=69.35 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 003725 513 MIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNN 592 (800)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 592 (800)
.|+..+...++++.|..+|+ .+...++.....++..+...++-.+|.+++++.+...+. +...+..-...+...++++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle-~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLE-KLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHH-HHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHH
Confidence 33444444556666666666 444444445555566666666666667766666655433 4555555666778888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 593 KAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 593 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
.|+++.+++.+.. +.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888764 44556899999999999999999988887653
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.81 E-value=3.2e-05 Score=47.89 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKP 678 (800)
Q Consensus 646 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 678 (800)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 148
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.72 E-value=0.066 Score=53.62 Aligned_cols=454 Identities=15% Similarity=0.152 Sum_probs=231.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHh
Q 003725 275 CENGRLDVGYDLLLKWSENGIPLNAF------AYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALIS--GYCK 346 (800)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~ 346 (800)
-+.+++.+|.++|.++.+.- ..++. .-+.++++|.. ++.+.....+....+. .| ...|-.|.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 46788889999998887752 22222 23445566553 3455555555555543 12 222333332 2356
Q ss_pred cCCHHHHHHHHHHHHHC--CCCch-------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 003725 347 CGNIIKALSLHGEMTSI--GIKTN-------------YVVSVILKCLCQMGKTSEAIKKFKEFKSM----GIFLDQVCYN 407 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~--~~~~~-------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 407 (800)
.+.+.+|.+.+..-... +..+. ..-...+.++...|.+.++..+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888887665544 22221 11134556677777777777777766543 3446677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003725 408 VIMDALCKLGEVEEAVKLFNEMEG---RQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484 (800)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (800)
.++-.+.+. .|-++++ .++-|| |-.++..|.+.=..-++ -.-..+.|.......++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHH
Confidence 766555542 2222211 122222 22333333322111110 000112233333333333332
Q ss_pred hc--CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH-------HhccCccCHHHHHHHHHccC
Q 003725 485 QY--GSVRDALDCLKYMKKQGVKPNVI-THNMIIEGLCTSGRVKEARAFFDDD-------LKEKCLENYSAMVDGYCEAN 554 (800)
Q Consensus 485 ~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~l~~~~~~~g 554 (800)
-. .+..--.++++.....-+.|+.. +...+...+.+ +.+++..+.+.. +.+.-...+..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11122223333333334455533 33344444433 455555554421 12223344777788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHH-------HHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHH
Q 003725 555 HLEEAFQFFMTLSQRGFLMRSESCCK-------LLTNLL----IEGYNNKAFKLLDTMLKLDAKPSKTTYDKV---IGAL 620 (800)
Q Consensus 555 ~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~ 620 (800)
+..+|...+.-+.-.++.. ..-.. +-...+ ..-+...-+.+|+.....++.. ......| ..-+
T Consensus 313 ~T~~a~q~l~lL~~ldp~~--svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPRI--SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhcCCcc--hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHH
Confidence 8888888877666544321 11111 111111 1122344456666665544321 1112222 2335
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 621 CLAGK-IKWAHQVFDFLTRHGLIPDLISYTMLIH----GFCK---LNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 621 ~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
.+.|. -++|..+++.+.+.... |...-|.... .|.+ ...+.+-..+-+-+.+.|+.|-.+.=.-+.+-++.
T Consensus 390 W~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 56666 78889999888874322 5554444332 2221 12223333333344466777765544333333322
Q ss_pred cCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 693 INKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLE 772 (800)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 772 (800)
+.- +...|++.++.-.-..+.+ +.| .+.+|-.++-++....+++||.+++.+ ++
T Consensus 469 AEy---------Lysqgey~kc~~ys~WL~~--iaP----------S~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP 522 (549)
T PF07079_consen 469 AEY---------LYSQGEYHKCYLYSSWLTK--IAP----------SPQAYRLLGLCLMENKRYQEAWEYLQK-----LP 522 (549)
T ss_pred HHH---------HHhcccHHHHHHHHHHHHH--hCC----------cHHHHHHHHHHHHHHhhHHHHHHHHHh-----CC
Confidence 110 2345667777666555553 444 899999999999999999999999887 47
Q ss_pred CCHHHHHHHH
Q 003725 773 PNIVIYKALL 782 (800)
Q Consensus 773 p~~~~~~~l~ 782 (800)
|+..++++-+
T Consensus 523 ~n~~~~dskv 532 (549)
T PF07079_consen 523 PNERMRDSKV 532 (549)
T ss_pred CchhhHHHHH
Confidence 7777776544
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.001 Score=68.11 Aligned_cols=88 Identities=10% Similarity=-0.012 Sum_probs=41.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003725 549 GYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKW 628 (800)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 628 (800)
.+...|++++|+++|+++++.++. +...+..+..++...|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555555544433 33344444444444455555555555444433 2233344444444444455555
Q ss_pred HHHHHHHHHH
Q 003725 629 AHQVFDFLTR 638 (800)
Q Consensus 629 A~~~~~~~~~ 638 (800)
|...|+.+.+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.019 Score=56.53 Aligned_cols=267 Identities=13% Similarity=0.074 Sum_probs=148.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHH
Q 003725 85 KDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDA 164 (800)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (800)
.++..|+..+..+.+-.+. +..-|..-+..+...|+++++..-.+..++..+... .....
T Consensus 63 k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~-------------------k~~~r 122 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS-------------------KGQLR 122 (486)
T ss_pred hhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-------------------ccccc
Confidence 5678888888888755433 466666666666666777776655544333322111 11122
Q ss_pred HHHHHHccCChHHHHHH---------------HHHccCCCC-ccCHHHHHHH-HHHHHHcCChhHHHHHHHHHHhCCCCC
Q 003725 165 MVKAYCSERMFDQALNV---------------LFQTDRPGF-VWSKFTCNFF-MNQLLKCGEVDMVLVLYEEMKSVGFSL 227 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~---------------~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~ 227 (800)
.-+++...++..+|... ++....... +|.-..+..+ ..++.-.|+++.|..+--.+++..
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--- 199 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--- 199 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---
Confidence 22222222333333222 222222211 2333333333 334566777777777776666542
Q ss_pred CHHhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 228 NQFTYDIVIKALC--KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305 (800)
Q Consensus 228 ~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (800)
....+...+++.| -.++.+.|...|++.+..+ |+...- +..-...+.++.+.+.|
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~s----------k~~~~~~k~le~~k~~g----------- 256 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKS----------KSASMMPKKLEVKKERG----------- 256 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhH----------HhHhhhHHHHHHHHhhh-----------
Confidence 2223333343333 4667777777777776654 332211 11111223334444443
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC
Q 003725 306 IREFCQNSRLVEAESVLLRMKQL---RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG 382 (800)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (800)
.-..+.|.+..|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.-.+...+.+..--..+..-..++...+
T Consensus 257 -N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 -NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred -hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888887764 344556667666777778888888888887777654333355566666777778
Q ss_pred CHHHHHHHHHHHHHCC
Q 003725 383 KTSEAIKKFKEFKSMG 398 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~ 398 (800)
++++|.+-+++..+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888887776553
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.7e-05 Score=45.23 Aligned_cols=31 Identities=45% Similarity=0.775 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.044 Score=54.09 Aligned_cols=92 Identities=9% Similarity=-0.021 Sum_probs=61.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC---CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 547 VDGYCEANHLEEAFQFFMTLSQRGF---LMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLA 623 (800)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (800)
..-..+.|++..|.+.|.+.+..++ .++...|.....+..+.|+.++|+.--++.++.+. .=...|..-..++...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~l 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLAL 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHH
Confidence 3445678889999999988876543 34455566666777888999999888888775430 0111233333455567
Q ss_pred CChHHHHHHHHHHHHC
Q 003725 624 GKIKWAHQVFDFLTRH 639 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~ 639 (800)
+++++|.+-++...+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7888888888877764
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00074 Score=63.49 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=85.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
-+.+.+++.+|+..|.++++.. +.|.+.|..-..+|++.|.++.|++-.+..+..++. -...|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4567788888888888888875 567777888888999999999999988888886554 56788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003725 664 ACNIFKDMKLRGIKPDVVLYTILCDAYS 691 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 691 (800)
|++.|++.++ +.|+..+|..-+..-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 9999999986 7899888866555443
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.0094 Score=59.07 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=83.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHcc-CCHHHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhc
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEA-NHLEEAFQFFMTLSQR----GF-LMRSESCCKLLTNLLIE 588 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~ 588 (800)
+..|...|++..|-+.+. .+...|... |++++|++.|++..+. +. ..-...+..+...+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLK------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHH------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 345566666666655554 244555555 6667777666665532 10 00123455667778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-----HH-HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh-
Q 003725 589 GYNNKAFKLLDTMLKLDAKPS-----KT-TYDKVIGALCLAGKIKWAHQVFDFLTRH--GLIPD--LISYTMLIHGFCK- 657 (800)
Q Consensus 589 g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~li~~~~~- 657 (800)
|++++|+++|++........+ .. .+...+-++...||+..|...++..... ++..+ ......|+.++-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 888888888888876533211 11 2233344666789999999999988753 33322 3445666766543
Q ss_pred -cCCHHHHHHHHHHHH
Q 003725 658 -LNCLREACNIFKDMK 672 (800)
Q Consensus 658 -~g~~~~A~~~~~~m~ 672 (800)
...+.+|+.-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 345777777777764
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.00091 Score=52.77 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=59.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHccCCCC-ccCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHhCCCCCCHHh
Q 003725 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGF-VWSKFTCNFFMNQLLKCG--------EVDMVLVLYEEMKSVGFSLNQFT 231 (800)
Q Consensus 161 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~ 231 (800)
+....|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566677777888888888888888888 788888888888877653 23345667777777777777777
Q ss_pred HHHHHHHHHh
Q 003725 232 YDIVIKALCK 241 (800)
Q Consensus 232 ~~~li~~~~~ 241 (800)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.0014 Score=52.49 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 657 (800)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3445556666777777777777776654 334456667777788888888888888888775444 45677778888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 003725 658 LNCLREACNIFKDMKL 673 (800)
Q Consensus 658 ~g~~~~A~~~~~~m~~ 673 (800)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888888765
No 157
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.00066 Score=69.24 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=84.8
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHHHccCCC--CccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH
Q 003725 156 NVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPG--FVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD 233 (800)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 233 (800)
+++......++..+....+++.+..++.+.+... ...-..+..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3444555666777777777777777777766541 11123344577888888888888888887777788888888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 234 IVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
.|+..+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877776666555666666666665554
No 158
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.092 Score=55.30 Aligned_cols=137 Identities=11% Similarity=0.053 Sum_probs=59.7
Q ss_pred HHHHHHccCChHHHHHHHHHccCC-CCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRP-GFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 243 (800)
.|..+.+.|+|-+..++++.--.. +...-..+++.+...+.....|++|.+.|..-.. . ...+.++.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le 836 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLE 836 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHH
Confidence 344444455555555544331110 0011123455555555555555555555543211 1 12334444444
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLL 323 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (800)
.+++-..+-..+ +-+....-.+...+.+.|.-++|.+.+-+. +.+ .+-+..|...+++.+|.++-+
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 444433333322 224444555566666666666555544321 111 123444555555666655544
Q ss_pred H
Q 003725 324 R 324 (800)
Q Consensus 324 ~ 324 (800)
.
T Consensus 903 ~ 903 (1189)
T KOG2041|consen 903 R 903 (1189)
T ss_pred h
Confidence 3
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.55 E-value=0.0014 Score=66.98 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 407 NVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLAR 481 (800)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (800)
.++++.|.+.|..++++.+++.=...|+-||..+++.|++.+.+.|++..|.++..+|...+...+..|+..-+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 344555555555555555555544445555555555555555555555555555444443333333333333333
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=9.6e-05 Score=44.54 Aligned_cols=30 Identities=43% Similarity=0.933 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888887664
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.029 Score=53.77 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 478 VLARGLAQYGSVRDALDCLKYMKKQ--GVKPNVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3445566677777777777777764 222334455566667777777777766655
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.50 E-value=0.14 Score=51.48 Aligned_cols=447 Identities=11% Similarity=0.126 Sum_probs=218.7
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHH--HHHh
Q 003725 205 LKCGEVDMVLVLYEEMKSVGFSLN------QFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQ--GLCE 276 (800)
Q Consensus 205 ~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 276 (800)
-+++++.+|..+|..+.+.. ..+ ...-+.++++|.. ++.+.....+....+.. | ...|-.+.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 34555555555555553221 111 1123345555554 34444444444444421 2 122222222 2346
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHH
Q 003725 277 NGRLDVGYDLLLKWSEN--GIPL------------NAFAYTAVIREFCQNSRLVEAESVLLRMKQL----RVTPDKYVYS 338 (800)
Q Consensus 277 ~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~ 338 (800)
.+++++|.+.+..+.+. +..+ +-..=+..++++...|++.++..+++++... .+.-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67777777777666654 2111 1122245677788889999998888887653 3346777887
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 339 ALISGYCKCGNIIKALSLHGEMTS---IGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCK 415 (800)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 415 (800)
.++-.+.+. +|-++.+ ..+-|+ +..++-.|.+.=+. ++.-.-..+.|.......++....-
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd--yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD--YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH--HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHh
Confidence 766655542 2222221 122222 22222222221100 0000001122333333344433322
Q ss_pred c--CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCC
Q 003725 416 L--GEVEEAVKLFNEMEGRQIVPDVAN-YTTVIDGYILRGKLVDAIGLFKKMREMGHK----PDIKAYNVLARGLAQYGS 488 (800)
Q Consensus 416 ~--g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~ 488 (800)
. .+..--+++++.....-+.|+... ...++..+.. +.+++..+-+.+....+. -=..+|..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 122233444444444445555322 2233333333 334443333333221111 124567777888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhc----CCHHHHHHHHHHHHhccCccC---HHHH---HHHHH
Q 003725 489 VRDALDCLKYMKKQGVKPNVITHNMI-------IEGLCTS----GRVKEARAFFDDDLKEKCLEN---YSAM---VDGYC 551 (800)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~----g~~~~a~~~~~~~~~~~~~~~---~~~l---~~~~~ 551 (800)
...|.+.+.-+... .|+...-.-+ .+..+.. -+...-..+++ .+...+.+. ...| ..-+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe-~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWE-EIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHH-HHHhhcccHHHHHHHHHHHHHHHH
Confidence 88888888777654 3433322111 1222211 11122222333 333333322 1122 22344
Q ss_pred ccCC-HHHHHHHHHHHHHcCCCCChhcHHH----HHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHH
Q 003725 552 EANH-LEEAFQFFMTLSQRGFLMRSESCCK----LLTNLLI---EGYNNKAFKLLDTMLKLDAKPSKT----TYDKVIGA 619 (800)
Q Consensus 552 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~ 619 (800)
+.|. -++|+++++.+.+-... |...-+. +-..|.+ .....+-+.+-+-+.+.|++|-.+ .-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 4554 78888888887764322 2222222 2222222 223444444444455667766433 33444433
Q ss_pred --HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 620 --LCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 620 --~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 685 (800)
+...|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..+++++ +|+..++++
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 4568999988766555555 6789999999999999999999999999985 666666544
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.48 E-value=0.0044 Score=52.21 Aligned_cols=98 Identities=15% Similarity=0.015 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 003725 577 SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAK--PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIP--DLISYTMLI 652 (800)
Q Consensus 577 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li 652 (800)
++...+..+...|++++|.+.++.++..... .....+..+..++.+.|+++.|...++.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666777777777777777654311 113455567788888888888888888887643331 245677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003725 653 HGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 653 ~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
.++.+.|+.++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 8888888999999998888875
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.0031 Score=54.06 Aligned_cols=94 Identities=9% Similarity=-0.105 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 657 (800)
...+...+...|++++|..+|+-+.... +-+..-|-.|.-++-..|++++|...|..+...++. |+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3344445566677777777777666544 344555667777777788888888888887776655 77777777888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 003725 658 LNCLREACNIFKDMKL 673 (800)
Q Consensus 658 ~g~~~~A~~~~~~m~~ 673 (800)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888877765
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.44 E-value=0.00024 Score=55.32 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAK-PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACN 666 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 666 (800)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777776665421 2344455577788888888888888877 322222 33444455777888888888888
Q ss_pred HHHH
Q 003725 667 IFKD 670 (800)
Q Consensus 667 ~~~~ 670 (800)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.41 E-value=0.0055 Score=51.57 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=6.0
Q ss_pred HhcCChHHHHHHHHHH
Q 003725 310 CQNSRLVEAESVLLRM 325 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m 325 (800)
.+.|++++|.+.|+.+
T Consensus 13 ~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 13 LKAGDYADAIQAFQAF 28 (119)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3333333333333333
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.04 Score=54.64 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 003725 412 ALCKLGEVEEAVKLFNEMEG 431 (800)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~ 431 (800)
++...||+..|.+.+++...
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 33344555555555555443
No 168
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0038 Score=60.99 Aligned_cols=282 Identities=17% Similarity=0.166 Sum_probs=153.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HhC--C-CCCCHHHHHHHHH
Q 003725 376 KCLCQMGKTSEAIKKFKEFKSMGIFLDQ----VCYNVIMDALCKLGEVEEAVKLFNEM--EGR--Q-IVPDVANYTTVID 446 (800)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~--~~~--~-~~~~~~~~~~li~ 446 (800)
.-+|+.|+....+.+|+...+.|.. |. .+|..|.++|.-.+++++|+++...= ..+ | -.-...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888887754 33 34666667777777888888765431 111 0 0112233344455
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 447 GYILRGKLVDAIGLFKKM----REMGHK-PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~----~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (800)
.+--.|.+++|+..-.+- .+.|-+ ....++..+...|-..|+.-... .-.+.|-.+..+ .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev-----------~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEV-----------T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHH-----------H
Confidence 555566666665432221 222211 12233444444444333210000 000001011100 0
Q ss_pred CCHHHHHHHHHHHHhc--c------CccCHHHHHHHHHccCCHHHHHHHHHHHHH----cCC-CCChhcHHHHHHHHHhc
Q 003725 522 GRVKEARAFFDDDLKE--K------CLENYSAMVDGYCEANHLEEAFQFFMTLSQ----RGF-LMRSESCCKLLTNLLIE 588 (800)
Q Consensus 522 g~~~~a~~~~~~~~~~--~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 588 (800)
..++.|.++|.+.+.- + .-..|..|...|.-.|+++.|+..-+.-+. -|- ..-...+..+..+++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 1133444454432221 0 112255566666666777777665433221 111 11223566777888888
Q ss_pred CCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhc
Q 003725 589 GYNNKAFKLLDTMLKLDAK-----PSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-----HGLIPDLISYTMLIHGFCKL 658 (800)
Q Consensus 589 g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~li~~~~~~ 658 (800)
|+++.|.+.|+......++ ....+.-+|...|.-..++++|+.++.+-+. .+..-....+.+|.++|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888888888876543221 2233455778888888889999988875442 11222456788899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 003725 659 NCLREACNIFKDMKL 673 (800)
Q Consensus 659 g~~~~A~~~~~~m~~ 673 (800)
|..++|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999887766553
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0035 Score=49.58 Aligned_cols=88 Identities=14% Similarity=0.233 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCC
Q 003725 648 YTMLIHGFCKLNCLREACNIFKDMKLRGI-KPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEI 726 (800)
Q Consensus 648 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 726 (800)
-...|.-+...|++.....+|+.++.+|+ -|...+|+.++.+..+-... .....++.-+.+..++.|...++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD-------~~~ie~kl~~LLtvYqDiL~~~l 100 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELD-------SEDIENKLTNLLTVYQDILSNKL 100 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcccc-------chhHHHHHHHHHHHHHHHHHhcc
Confidence 34455566667999999999999999999 89999999999888872211 11234567788889999988777
Q ss_pred CchhhhccCCCCCcchHHHHHHHHHh
Q 003725 727 SPDVMLGQGLEPDTVCYTVLIARLCY 752 (800)
Q Consensus 727 ~p~~~~~~~~~~~~~~~~~l~~~~~~ 752 (800)
+| +..+|+.++..+.+
T Consensus 101 KP----------~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KP----------NDETYNIVLGSLLK 116 (120)
T ss_pred CC----------cHHHHHHHHHHHHH
Confidence 77 99999999998865
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.35 E-value=0.18 Score=49.57 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=79.9
Q ss_pred HHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCcChhc--HHHH
Q 003725 197 CNFFMNQLL--KCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC--KLARFEEAFDVLNEMNKAGVTLHGHN--YSTI 270 (800)
Q Consensus 197 ~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l 270 (800)
|..|-.++. -.|+-..|.+.-.+..+. +..|......++.+-. -.|++++|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 356777777766655422 2345555555554433 468899999999988752 22211 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQL 328 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (800)
.-..-+.|+.+.|.++-+...+.- +.-...+.+++...|..|+++.|+++++.-...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 223346788888888887777653 334567788888888899999998888876643
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.35 E-value=0.0062 Score=52.26 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 340 LISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEV 419 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 419 (800)
+...+...|++++|..+|+.+...++.....|..+..++-..|++++|+..|.......+. |+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 3444455566666666666655554444455555555555555555555555555555442 444555555556666666
Q ss_pred HHHHHHHHHHHh
Q 003725 420 EEAVKLFNEMEG 431 (800)
Q Consensus 420 ~~A~~~~~~~~~ 431 (800)
+.|.+.|+....
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.35 E-value=0.0035 Score=50.11 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=6.4
Q ss_pred HHHHhcCCHHHHHHHHH
Q 003725 446 DGYILRGKLVDAIGLFK 462 (800)
Q Consensus 446 ~~~~~~g~~~~A~~~~~ 462 (800)
..+...|++++|...+.
T Consensus 76 ~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 76 LAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 33333333333333333
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0031 Score=59.48 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003725 550 YCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWA 629 (800)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 629 (800)
..+.++|.+|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 44566777777777777776654 66666777777777777777777777776654 23345677777777777778777
Q ss_pred HHHHHHHHHCC
Q 003725 630 HQVFDFLTRHG 640 (800)
Q Consensus 630 ~~~~~~~~~~~ 640 (800)
.+.|++.++..
T Consensus 169 ~~aykKaLeld 179 (304)
T KOG0553|consen 169 IEAYKKALELD 179 (304)
T ss_pred HHHHHhhhccC
Confidence 77777777643
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.30 E-value=0.0051 Score=60.61 Aligned_cols=128 Identities=11% Similarity=0.094 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 231 TYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE-NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREF 309 (800)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 309 (800)
+|..+++..-+.+..+.|..+|++.++.+ ..+..+|...+..-.. .++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555555555555555554322 1223333333333222 34444455555555543 334445555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
.+.|+.+.|..+|++.... .|.. ..|...+..-.+.|+++.+..+.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1222 2455555555555555555555544443
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.067 Score=51.30 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=98.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHh
Q 003725 305 VIREFCQNSRLVEAESVLLRMKQLRVTPDKYV---YSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQ 380 (800)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 380 (800)
....+...|++++|.+.|+.+...-..+ ... .-.++.++.+.+++++|...+++..+..+..+ ..+.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444455677777777777766542211 111 12345666677777777777777776655443 333333332221
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 381 --MG---------------K---TSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN 440 (800)
Q Consensus 381 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (800)
.+ + ..+|...|+++ +.-|=...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l---------------i~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL---------------VRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH---------------HHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 12233333333 33333333345555544444332 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 441 YTTVIDGYILRGKLVDAIGLFKKMREM--GHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
--.+...|.+.|.+..|..-++.+++. +.+........++.++...|..++|......+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 224566788899999999999999875 222345567788889999999999888776554
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00051 Score=53.49 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=8.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 003725 340 LISGYCKCGNIIKALSLHGE 359 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~ 359 (800)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.017 Score=55.07 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHH
Q 003725 557 EEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAG---KIKWAHQVF 633 (800)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 633 (800)
+....-++.-+..++. |...|..|...|...|+.+.|...|.+..+.. .+++..+..+..++..+. ...++..+|
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344444555555555 77888889999999999999999999888765 466777777777665443 357889999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 634 DFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 634 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
++++..++. |+.....|...+...|++.+|...|+.|++. -|....+..++.
T Consensus 217 ~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 999988776 8888888999999999999999999999986 344445555543
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.27 E-value=0.008 Score=61.61 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=65.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNN 592 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 592 (800)
...+...|++++|.+.|++.+... +...|..+..+|.+.|++++|+..+++++..++. +...+..+..++...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 445667788888888888665533 3344777777788888888888888888776654 5566777777888888888
Q ss_pred HHHHHHHHHHhCC
Q 003725 593 KAFKLLDTMLKLD 605 (800)
Q Consensus 593 ~A~~~~~~~~~~~ 605 (800)
+|+..+++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887754
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.018 Score=52.27 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL 454 (800)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 454 (800)
.+..+...+.+.|++++|...+++....... +...+..+...+...|+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCh
Confidence 3444455555555555555555555443221 333444444444444443
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.0011 Score=49.13 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=46.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003725 621 CLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILC 687 (800)
Q Consensus 621 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll 687 (800)
...|++++|...|+.+.+..+. +...+..++.+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4667888888888888776555 7777777888888888888888888888764 66655555444
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.23 E-value=0.022 Score=51.63 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Q 003725 301 AYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD--KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCL 378 (800)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (800)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.....+.....+..+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444455555555555555555544321111 234444555555555555555555555544332223333344444
Q ss_pred HhcCC
Q 003725 379 CQMGK 383 (800)
Q Consensus 379 ~~~g~ 383 (800)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.07 Score=55.63 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred cChhcHHHHHHHHHhcCChhHHHHHHH---------HHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCC
Q 003725 262 LHGHNYSTIIQGLCENGRLDVGYDLLL---------KWSENGIPLNAFAYTAVIREFCQNSR--LVEAESVLLRMKQLRV 330 (800)
Q Consensus 262 ~~~~~~~~li~~~~~~g~~~~a~~~~~---------~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 330 (800)
+-...+.+-+..|...|.+++|.++-. .+... ..+.-.++.-=.+|.+..+ +-+...-++++++.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 344445555666777888887765421 11100 0111222333334443333 2233334555666665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 331 TPDKYVYSALISGYCKCGNIIKALSLHGE 359 (800)
Q Consensus 331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (800)
.|+.... ...++-.|++.+|.++|.+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 5665432 3445555666666666543
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.21 E-value=0.0042 Score=60.71 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=46.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHH--HHh--CCCC-cChhcHHHHHHH
Q 003725 203 QLLKCGEVDMVLVLYEEMKSVGFSLNQF----TYDIVIKALCKLARFEEAFDVLNE--MNK--AGVT-LHGHNYSTIIQG 273 (800)
Q Consensus 203 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~--~~~--~~~~-~~~~~~~~li~~ 273 (800)
-+++.|+......+|+...+.|. -|.. +|..|..+|.-.+++++|+++... ... .|-+ -...+...|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 47888888888888888887763 2332 455566666666777777766432 111 1111 122233444455
Q ss_pred HHhcCChhHHHH
Q 003725 274 LCENGRLDVGYD 285 (800)
Q Consensus 274 ~~~~g~~~~a~~ 285 (800)
+--.|.+++|..
T Consensus 105 lKv~G~fdeA~~ 116 (639)
T KOG1130|consen 105 LKVKGAFDEALT 116 (639)
T ss_pred hhhhcccchHHH
Confidence 555566666643
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.20 E-value=0.0077 Score=54.44 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 300 FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP--DKYVYSALISGYCKCGNIIKALSLHGEMTSI 363 (800)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (800)
..|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555566666666665555432111 1234555555556666666666666555544
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.013 Score=55.77 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=89.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCCCCCCCCCcccCchhH
Q 003725 633 FDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKP-DVVLYTILCDAYSKINKRGSSSSPHTLRSNEEV 711 (800)
Q Consensus 633 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 711 (800)
++.-...++. |...|..|..+|...|++..|..-|.+..+. .| +...+..+-.++..... ....
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~------------~~~t 209 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAG------------QQMT 209 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC------------Cccc
Confidence 3333445566 8899999999999999999999999998874 44 34455555555555322 2346
Q ss_pred HHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 712 VDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALL 782 (800)
Q Consensus 712 ~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 782 (800)
.++.++|+++...+.. |..+...|...+...|++.+|+..|+.|.+. -|....++.++
T Consensus 210 a~a~~ll~~al~~D~~-----------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 210 AKARALLRQALALDPA-----------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHHhcCCc-----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 6788899988865544 8889999999999999999999999999964 44444444444
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.12 Score=45.17 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cChhcHHHH
Q 003725 192 WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVT-LHGHNYSTI 270 (800)
Q Consensus 192 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 270 (800)
|++.-.-.|...+.+.|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+.+.. .++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3334444455555555555555555555554333445555555555555555555555555555543210 122233444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (800)
.+.+...|.+..|...|+..... -|+...-......+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 45555555555555555555543 223333222333344444444433
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.063 Score=49.58 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=78.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKIN 694 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~ 694 (800)
.++..+.-.|.+.-....+++..+.+..-++.....|++.-.+.|+.+.|...|++..+..-+.|..+++.++.--..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a-- 259 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA-- 259 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh--
Confidence 344444455556566666666666554445666666666666666666666666655544334444444443322111
Q ss_pred CCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 695 KRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 774 (800)
....+.+++.+|...+.++...+.. |+..-|+-.-++.-.|+..+|++.++.|++ +.|.
T Consensus 260 --------~i~lg~nn~a~a~r~~~~i~~~D~~-----------~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~ 318 (366)
T KOG2796|consen 260 --------FLHLGQNNFAEAHRFFTEILRMDPR-----------NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPR 318 (366)
T ss_pred --------hheecccchHHHHHHHhhccccCCC-----------chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCc
Confidence 0112344555565555555543333 555666666666666777777777777773 4555
Q ss_pred HHHHH
Q 003725 775 IVIYK 779 (800)
Q Consensus 775 ~~~~~ 779 (800)
..+.+
T Consensus 319 ~~l~e 323 (366)
T KOG2796|consen 319 HYLHE 323 (366)
T ss_pred cchhh
Confidence 55444
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.027 Score=50.87 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 438 VANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP--DIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMII 515 (800)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (800)
...|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666667777777777777776543222 12466667777777777777777777776552 33344444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 003725 516 EGLC-------TSGRVKEARAFFD 532 (800)
Q Consensus 516 ~~~~-------~~g~~~~a~~~~~ 532 (800)
..+. +.|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 4445554444443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.15 E-value=0.0021 Score=47.00 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 616 VIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 616 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 679 (800)
+...+...|++++|...|+.+++..+. +...+..+..++...|++++|...|+++++. .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 455677888888888888888876655 7777888888888888888888888888763 555
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.13 E-value=0.32 Score=47.93 Aligned_cols=311 Identities=16% Similarity=0.116 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHH
Q 003725 419 VEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL--RGKLVDAIGLFKKMREMGHKPDIKAYNVLARGL--AQYGSVRDALD 494 (800)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~ 494 (800)
...+.+.|..-+. ..-|..|-.++.. .|+-..|.++-.+..+. +..|...+-.++.+- .-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 3445555555442 2346666666554 57778888777665432 344666666666544 45799999999
Q ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003725 495 CLKYMKKQGVKPNVIT--HNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRG 570 (800)
Q Consensus 495 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (800)
-|+.|.+. |.... +..|.-.-.+.|..+.|..+-++..... -...+...+...+..|+++.|+++.+.-....
T Consensus 142 kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 142 KFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 99999853 22221 2233333456799999988888544433 23347888999999999999999998877654
Q ss_pred CC-CChh--cHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003725 571 FL-MRSE--SCCKLLTNL---LIEGYNNKAFKLLDTMLKLDAKPSKTTY-DKVIGALCLAGKIKWAHQVFDFLTRHGLIP 643 (800)
Q Consensus 571 ~~-~~~~--~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 643 (800)
+. ++.. .-..++.+- .-..+...|...-.+..+. .||...- ..-..++.+.|++.++-.+++.+-+..+.|
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 32 2211 111222211 1223455666666665554 4553322 233567888888888888888888876655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH-HHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHH
Q 003725 644 DLISYTMLIHGFCKLNCLREACNIFKDMKLR-GIKPDVV-LYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEM 721 (800)
Q Consensus 644 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 721 (800)
++. .+..+.+.|+.. +.-+++.... .++||.. +...+..+-.. .+++..|..--+..
T Consensus 297 ~ia----~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAld---------------a~e~~~ARa~Aeaa 355 (531)
T COG3898 297 DIA----LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALD---------------AGEFSAARAKAEAA 355 (531)
T ss_pred HHH----HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHh---------------ccchHHHHHHHHHH
Confidence 542 222345556533 3333332210 1456543 33333333333 23455555544433
Q ss_pred HHCCCCchhhhccCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC
Q 003725 722 KEMEISPDVMLGQGLEPDTVCYTVLIARLCYT-NNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 722 ~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~ 774 (800)
.. .. |....|..|.+.-... |+-.++...+-+.++....|+
T Consensus 356 ~r--~~----------pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 356 AR--EA----------PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hh--hC----------chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 32 23 3777888888777555 888888888888776544554
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.12 E-value=0.071 Score=55.59 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003725 653 HGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 653 ~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
.+|.++|+..||..+++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 4567788888888888887654
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.11 E-value=0.055 Score=50.53 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSM 397 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 397 (800)
..+...|++++|...|+.+....+... .+...++.++.+.|+++.|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455556666666655555433322 44445555555555555555555555544
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.10 E-value=0.0019 Score=47.93 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003725 609 SKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN-CLREACNIFKDMKL 673 (800)
Q Consensus 609 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 673 (800)
+..+|..+...+...|++++|...|++.++.++. +...|..+..+|.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3556777788888888888888888888886655 6778888888888888 68888888888775
No 194
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.008 Score=59.25 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLN---AFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 320 (800)
+.+.|.++|+...+. +..+...|...+.-+...|+.+.|..+|++.... ++++ ...|...++.=.+.|+++.+.+
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333344444444433 2223344444444444444555555555544443 1211 2355556666566666666666
Q ss_pred HHHHHHh
Q 003725 321 VLLRMKQ 327 (800)
Q Consensus 321 ~~~~m~~ 327 (800)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.21 Score=43.71 Aligned_cols=133 Identities=13% Similarity=0.015 Sum_probs=95.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHH
Q 003725 226 SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGI-PLNAFAYTA 304 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 304 (800)
.|++..-..|..++.+.|++.+|...|++....-+--|....-.+.++....+++..|...++.+.+... .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4777777778888899999999999998887655556777778888888888899999888888877531 012334556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 305 VIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
+.+.+...|++.+|+.-|+..... -|+...-......+.++|+..++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677888888888888888888875 455554444455666777666665544443
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.99 E-value=0.049 Score=45.11 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=23.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 308 EFCQNSRLVEAESVLLRMKQLRVTPD--KYVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443322 12233334444444444444444444443
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.97 E-value=0.48 Score=47.36 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003725 197 CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAG 259 (800)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 259 (800)
|..+...-...|+.+.|..+++. +|+..- =+..+.+.|+.+.| +.+..+.|
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg 53 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG 53 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC
Confidence 45566666677777777666542 444432 23444555665555 34444444
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.95 E-value=0.044 Score=45.41 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 003725 581 LLTNLLIEGYNNKAFKLLDTMLKLDAKPS--KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIP--DLISYTMLIHGFC 656 (800)
Q Consensus 581 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~ 656 (800)
...++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++......+.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566666677777776666654433 2345566677777888888888887777532220 1112222334566
Q ss_pred hcCCHHHHHHHHHHHH
Q 003725 657 KLNCLREACNIFKDMK 672 (800)
Q Consensus 657 ~~g~~~~A~~~~~~m~ 672 (800)
..|+.++|++.+-..+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7788888887776654
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.076 Score=57.08 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC--------CHHHHHHHHHHHHH
Q 003725 330 VTPDKYVYSALISGYCK--CG---NIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG--------KTSEAIKKFKEFKS 396 (800)
Q Consensus 330 ~~p~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~ 396 (800)
.+.+...|...+++... .+ +.+.|..+|++..+..+....++..+..++.... +...+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34566777777666432 22 3667777777777766555444444333332211 11222222222222
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 397 M-GIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 397 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
. ....+...|.++...+...|++++|...+++....+ |+...|..+...+...|+.++|...+.+....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 112233455555444455566666666666666553 35556666666666666666666666666554
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.35 Score=44.91 Aligned_cols=144 Identities=12% Similarity=-0.031 Sum_probs=111.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HH
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDK-----VI 617 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~ 617 (800)
.+.++..+.-.|++.-....+.++++.+...++...+.+++.-.+.||.+.|...++...+..-..+..+++. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3556667777788888899999999988787888899999999999999999999998776543444444433 33
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDA 689 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~ 689 (800)
..|.-++++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|+. +.|...+-++++-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFN 328 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHH
Confidence 4566788999999999999887666 777777766667778999999999999997 47777666654433
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.92 E-value=0.15 Score=47.62 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHH
Q 003725 340 LISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSE 386 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 386 (800)
+...|.+.|.+..|..-++.+++.-+... .+...++.++.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 45667778888888887777777655443 455666666666666553
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.024 Score=51.21 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 003725 608 PSKTTYDKVIGALCL-----AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKL----------------NCLREACN 666 (800)
Q Consensus 608 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~ 666 (800)
.+..+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455566666666654 356666667777777777777888888887766432 24566899
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 667 IFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 667 ~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
++++|...|+-||..|+..+++.+++
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 99999999999999999999999987
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.023 Score=51.35 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=79.0
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHH
Q 003725 214 LVLYEEMKSVGFSLNQFTYDIVIKALCK-----LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLL 288 (800)
Q Consensus 214 ~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 288 (800)
...|+..... ..|..+|..++..|.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------- 103 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------- 103 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------
Confidence 4445544221 3577777777777764 35556666667777777777777777777776654 2221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 003725 289 KWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNI-IKALSLHGEMT 361 (800)
Q Consensus 289 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 361 (800)
|.. .+.++..- .-.+-+-|++++++|...|+-||..++..+++.+.+.+.. .+..++.-.|.
T Consensus 104 --------p~n-~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 104 --------PRN-FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred --------ccc-HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 11111111 1223467889999999999999999999999998776653 33444444443
No 204
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.85 E-value=0.069 Score=57.37 Aligned_cols=140 Identities=14% Similarity=-0.002 Sum_probs=81.2
Q ss_pred CCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcC-hhcHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 003725 225 FSLNQFTYDIVIKALCKL-----ARFEEAFDVLNEMNKAGVTLH-GHNYSTIIQGLCENG--------RLDVGYDLLLKW 290 (800)
Q Consensus 225 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g--------~~~~a~~~~~~~ 290 (800)
.+.|...|...+++.... +....|..+|++..+.. |+ ...|..+..++.... ++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345667777777665432 22567778888877754 33 344444444333221 122233333332
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch
Q 003725 291 SEN-GIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 291 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 368 (800)
... ..+.+..+|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....++..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 222 123345566666555666677777777777777654 5666777777777777777777777777766555433
No 205
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=1.2 Score=48.85 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 003725 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC 240 (800)
Q Consensus 161 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 240 (800)
........+.+.|++++|...|-+.+..- .|+ .++.-|....++..-..+++.+.+.|+ .+...-..|+.+|.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYi 442 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHH
Confidence 44455556667788888888876655432 222 235555666666666777777777775 35556667788888
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-+++|..+-..... +......++ -..+++++|.+
T Consensus 443 Klkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~ 511 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALR 511 (933)
T ss_pred HhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHH
Confidence 8888777666655433 2211 11234455556666666666555444333 223333333 34567788877
Q ss_pred HHHHHH
Q 003725 321 VLLRMK 326 (800)
Q Consensus 321 ~~~~m~ 326 (800)
.+..+.
T Consensus 512 yi~slp 517 (933)
T KOG2114|consen 512 YISSLP 517 (933)
T ss_pred HHhcCC
Confidence 776653
No 206
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.71 E-value=1.5 Score=49.08 Aligned_cols=197 Identities=12% Similarity=0.037 Sum_probs=96.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHH--HHHHHhcCChHHHHHHHH--------HHHHCCCCCCHHHH
Q 003725 585 LLIEGYNNKAFKLLDTMLKLDA-KPS-----KTTYDKV--IGALCLAGKIKWAHQVFD--------FLTRHGLIPDLISY 648 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~~~-~~~-----~~~~~~l--~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~ 648 (800)
.+..+++..|...++.+.+..- .|+ ...+... +-.+...|+++.|...|. .....+...+...+
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 4456888888888888876421 111 1122222 223446799999999997 44455555454444
Q ss_pred HHH--HHHHHhcCC--HHH--HHHHHHHHHH---cCCCCCHHHHHHHH-HHHhccCCCCCCCCCCcccCchhHHHHHHHH
Q 003725 649 TML--IHGFCKLNC--LRE--ACNIFKDMKL---RGIKPDVVLYTILC-DAYSKINKRGSSSSPHTLRSNEEVVDASDFL 718 (800)
Q Consensus 649 ~~l--i~~~~~~g~--~~~--A~~~~~~m~~---~g~~pd~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 718 (800)
..+ +..+...+. ..+ +.++++++.. .....+..++..++ .++..... ......+..+.++.+..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ne~k~~l~~~L~~~ 524 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEP------FSSNEAKRHLQEALKMA 524 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCc------cccHHHHHHHHHHHHHH
Confidence 332 222222232 222 6666665543 11122334444443 33322110 00012233333344333
Q ss_pred HHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHc-----cccCCCC
Q 003725 719 EEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEP---NIVIYKALLC-----GCPTKKD 790 (800)
Q Consensus 719 ~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~-----~~~~~g~ 790 (800)
....+..- --..+++.|...+. .|+..|..+..........+. ....|..+.. .+...|+
T Consensus 525 --~~~~~n~~---------l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~ 592 (608)
T PF10345_consen 525 --NNKLGNSQ---------LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGD 592 (608)
T ss_pred --HHhhccch---------HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCc
Confidence 01111110 02234555555555 788888777766644322222 4456643333 4667799
Q ss_pred HHHHHhhhc
Q 003725 791 VDKYLSLFA 799 (800)
Q Consensus 791 ~~~A~~~~~ 799 (800)
.++|.+..+
T Consensus 593 ~~ka~~~~~ 601 (608)
T PF10345_consen 593 RDKAEEARQ 601 (608)
T ss_pred HHHHHHHHH
Confidence 999987654
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.66 E-value=0.012 Score=44.13 Aligned_cols=63 Identities=13% Similarity=-0.069 Sum_probs=48.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLY 683 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 683 (800)
..|.+.+++++|.++++.+...++. +...|.....++.+.|++++|.+.|++.++. .|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence 4677888888888888888877665 7777778888888888888888888888864 5655443
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.56 E-value=1 Score=45.43 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 003725 610 KTTYDKVIGALCLAGKIKWAHQVFDFLTRHG-LIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYT-ILC 687 (800)
Q Consensus 610 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~ll 687 (800)
..+|...+..-.+...++.|+.+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--+.. -||...|. -.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777788888999998888777 6677888888887554 57888888888775543 56655443 233
Q ss_pred HHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 688 DAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
.-+..+ ++-..|..+|+.....=... .-...|..+|..-.+.|+...|..+=++|.
T Consensus 474 ~fLi~i---------------nde~naraLFetsv~r~~~~---------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRI---------------NDEENARALFETSVERLEKT---------QLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHh---------------CcHHHHHHHHHHhHHHHHHh---------hhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 333332 23456777777544210000 024578888888888888888888877776
Q ss_pred HCCCCCCHHHHH
Q 003725 768 DRGLEPNIVIYK 779 (800)
Q Consensus 768 ~~g~~p~~~~~~ 779 (800)
+ +-|...+..
T Consensus 530 e--~~pQen~~e 539 (660)
T COG5107 530 E--LVPQENLIE 539 (660)
T ss_pred H--HcCcHhHHH
Confidence 4 345544333
No 209
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.55 E-value=0.0088 Score=44.16 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 416 LGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
.|++++|+++|+.+....+. +...+..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444433222 333344444444444444444444444443
No 210
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.54 E-value=0.012 Score=43.59 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 003725 336 VYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG-KTSEAIKKFKEF 394 (800)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 394 (800)
.|..+...+...|++++|+..|++..+.++....++..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444433322234444444444444 344444444333
No 211
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.48 E-value=0.014 Score=42.57 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=18.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 344 YCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
+...|++++|...|+++.+..+....++..+..++...|++++|...|++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444444444444333322223333333333333333333333333
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.36 E-value=0.92 Score=42.59 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=28.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNV---ITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+-|.+.|.+..|..-++.|++. .+-+. ..+..+..+|...|-.++|.+.-.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 44556666666666666666655 22222 233344455666666666655544
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.31 E-value=1.2 Score=45.00 Aligned_cols=183 Identities=14% Similarity=0.032 Sum_probs=95.0
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHH
Q 003725 575 SESCCKLLTNLLIEGYNNKAFKLLDTMLKLD---AKPSKTTYDKVIGALCL---AGKIKWAHQVFDFLTRHGLIPDLISY 648 (800)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~ 648 (800)
..+...++-+|-...+++..+++++.+.... +.....+-...+-++.+ .|+.++|.+++..+....-.+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344445555555566666666666655431 11111111223334445 66667777766665544445566666
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHH
Q 003725 649 TMLIHGFCK---------LNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLE 719 (800)
Q Consensus 649 ~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 719 (800)
..++..|-. ....++|+..|.+.-+ +.||..+-..+..-....|... .......+....+.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~--------~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDF--------ETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcc--------cchHHHHHHHHHHH
Confidence 666665531 1237788888887765 3466544333222222222110 11112222222222
Q ss_pred HHH-HCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 720 EMK-EMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 720 ~~~-~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
.+. +.|... -..+-.-+.++..+..-.|++++|.+..++|.+. .|+..
T Consensus 291 ~llg~kg~~~-------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 291 SLLGRKGSLE-------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred HHHHhhcccc-------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 222 222221 1225556678899999999999999999999854 45544
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.30 E-value=0.24 Score=42.98 Aligned_cols=92 Identities=9% Similarity=-0.078 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 659 (800)
.....+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|......+.. |+..+-.+..+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 33445667899999999998887665 345666788888888999999999999888765543 6666777888999999
Q ss_pred CHHHHHHHHHHHHH
Q 003725 660 CLREACNIFKDMKL 673 (800)
Q Consensus 660 ~~~~A~~~~~~m~~ 673 (800)
+.++|+..|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999886
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.30 E-value=0.1 Score=50.52 Aligned_cols=93 Identities=9% Similarity=-0.062 Sum_probs=62.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCH
Q 003725 586 LIEGYNNKAFKLLDTMLKLDAKPS--KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLI--PDLISYTMLIHGFCKLNCL 661 (800)
Q Consensus 586 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~ 661 (800)
...|++++|+..|+.+++...... ...+-.+...|...|++++|...|+.+.+..+. .....+-.++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 345666677766766666532111 235567778888888888888888888863222 1344555567777888899
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 003725 662 REACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 662 ~~A~~~~~~m~~~g~~pd~ 680 (800)
++|.++|+++++. .|+.
T Consensus 234 ~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHHHHHHH--CcCC
Confidence 9999999888875 5553
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.25 E-value=0.072 Score=51.53 Aligned_cols=51 Identities=16% Similarity=0.006 Sum_probs=22.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445555555555444431 221 2333444444445555555555544443
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.13 E-value=0.019 Score=43.77 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 611 TTYDKVIGALCLAGKIKWAHQVFDFLTR----HGLI-PD-LISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+++.+...|...|++++|...|++..+ .|.. |+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567778888888888888888887774 2211 22 55678888888899999999988888764
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=3.3 Score=45.57 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=69.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 274 LCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKA 353 (800)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 353 (800)
+.+.|++++|...+-+-+.. +.| ..+|.-|....++.+-..+++.+.+.|.. +...-..|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34556666665555444332 111 12344444444555555566666666543 333444566666666666665
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 354 LSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEM 429 (800)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (800)
.+..+... .|.. -.-+...+..+.+.+-.++|..+-.+... ....... .+-..+++++|++.+..+
T Consensus 451 ~efI~~~~-~g~~-~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW-FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce-eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55544332 1111 01234455556666666666655444332 1222222 233456777777777665
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.95 E-value=0.55 Score=38.64 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
.....++.+...|.-+.-.++...+.+ +-.+++...-.+..+|.+.|+..+|.++++++-++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555666667777766666666654 2345666666777777777777777777777777664
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=95.94 E-value=0.31 Score=42.34 Aligned_cols=90 Identities=14% Similarity=0.015 Sum_probs=66.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhh
Q 003725 652 IHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVM 731 (800)
Q Consensus 652 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 731 (800)
..-+...|++++|..+|+-+.. ..|...-|..=+.+|.. ..+.+++|...|.........
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q--------------~~k~y~~Ai~~Y~~A~~l~~~---- 103 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQ--------------LKKQFQKACDLYAVAFTLLKN---- 103 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcccC----
Confidence 3345678888888888888775 34544555555555555 367788888888766654433
Q ss_pred hccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 732 LGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
|+..+-..+.||...|+.++|...|+...+
T Consensus 104 -------dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 104 -------DYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -------CCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 777778899999999999999999999986
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=3.3 Score=44.89 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCH
Q 003725 477 NVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHL 556 (800)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (800)
+--+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-+ ..+.|..|...+.++.+.|+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk---skksPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK---SKKSPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh---ccCCCCCchhHHHHHHhcccH
Confidence 333444555566666666555543 4555555555566666666665544433 122244455555555555555
Q ss_pred HHHHHHHH
Q 003725 557 EEAFQFFM 564 (800)
Q Consensus 557 ~~A~~~~~ 564 (800)
++|.+.+.
T Consensus 761 ~EA~KYip 768 (829)
T KOG2280|consen 761 DEAKKYIP 768 (829)
T ss_pred HHHhhhhh
Confidence 55555543
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.86 E-value=2 Score=43.56 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 472 DIKAYNVLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
+-..+.+++.+..-.|+.+.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555566666666666666666666654
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.82 E-value=0.42 Score=41.85 Aligned_cols=69 Identities=22% Similarity=0.443 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR-----EMGHKPDIKA 475 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 475 (800)
...++..+...|++++|..+.+.+....+- |...|..+|.+|...|+...|.+.|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555566666666666666555433 55566666666666666666666665552 2355555443
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=1.6 Score=40.36 Aligned_cols=84 Identities=13% Similarity=-0.010 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003725 439 ANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGL 518 (800)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (800)
..|..-..+|....++++|...+.+..+. .. +...+-. ....++.|.-+.+++.+. +--...+.-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yE-nnrslfh------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YE-NNRSLFH------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HH-hcccHHH------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 44555556677777777777766665431 01 1111111 122334455555554432 11223344445566
Q ss_pred HhcCCHHHHHHHHH
Q 003725 519 CTSGRVKEARAFFD 532 (800)
Q Consensus 519 ~~~g~~~~a~~~~~ 532 (800)
..+|..+.|-..++
T Consensus 102 ~E~GspdtAAmale 115 (308)
T KOG1585|consen 102 VECGSPDTAAMALE 115 (308)
T ss_pred HHhCCcchHHHHHH
Confidence 66666666655555
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.71 E-value=0.071 Score=46.79 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMK-----LRGIKPDVVLY 683 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~~~ 683 (800)
....++..+...|+++.|....+.+....+- |...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455677788899999999999999887665 88889999999999999999999888875 35888886653
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.54 E-value=0.1 Score=39.07 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHG 640 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 640 (800)
.+...+++++|.+.++.++..+ +.+...+.....++...|++++|...++...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3445555555555555555543 3344445555556666666666666666666543
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.53 E-value=0.4 Score=50.37 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=47.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 413 LCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDA 492 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 492 (800)
..+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+..+ |..|+-.+.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 34455555555543332 2445566666666666666666655554432 33344445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 493 LDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.++.+....+| -++....++.-.|++++..+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555444 12333344444455555554444
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=2.1 Score=39.65 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHc
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQT 185 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 185 (800)
...|....-++-...++++|..-+.+..+-... ... .+-..+.++.|.-+.+++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrs-------------------------lfhAAKayEqaamLake~ 84 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRS-------------------------LFHAAKAYEQAAMLAKEL 84 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-ccc-------------------------HHHHHHHHHHHHHHHHHH
Confidence 456666666676677777777766665533110 000 011112233333333333
Q ss_pred cCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---C--C
Q 003725 186 DRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA---G--V 260 (800)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~ 260 (800)
.+.. .-+..|+.....|..+|..+.|-.-++..-+ ..++.+.++|+++|++...- + -
T Consensus 85 ~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 85 SKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred HHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchH
Confidence 3221 1123345555666777766666555554422 11233444444444433221 0 0
Q ss_pred CcChhcHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCC
Q 003725 261 TLHGHNYSTIIQGLCENGRLDVGYDLLLKWSE----NGIPLN-AFAYTAVIREFCQNSRLVEAESVLLRMKQL---RVTP 332 (800)
Q Consensus 261 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p 332 (800)
.--...+..+.+++.+...+++|-..+.+-.. ..--++ -..|.+.|-.+....++..|++.++.--+. .-.-
T Consensus 147 ~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se 226 (308)
T KOG1585|consen 147 QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE 226 (308)
T ss_pred HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence 00112233344455555566655444332221 110111 123444455555566777777777764332 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 333 DKYVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
|..+...|+.+| ..||.+++..++
T Consensus 227 d~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 227 DSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 455566666655 446666655554
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.28 E-value=2.7 Score=39.62 Aligned_cols=178 Identities=18% Similarity=0.122 Sum_probs=92.3
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-hHHHHHHHHHHHhc----
Q 003725 309 FCQNSRLVEAESVLLRMKQLR--VTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKT-NYVVSVILKCLCQM---- 381 (800)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---- 381 (800)
-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++++.|+...++.....+.. +..+...+.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 345677777777777776542 11234455556666777777777777777776654443 34454444444421
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 382 ---GKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAI 458 (800)
Q Consensus 382 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 458 (800)
.+...+...+..+.+ ++.-|=...=...|..-+..+... =...=..+.+.|.+.|.+..|.
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHH
Confidence 222222222222211 111111111112222222222110 0000123456788888888888
Q ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 459 GLFKKMREMGH--KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 459 ~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
.-+++|++.-. .-....+-.+..+|...|-.++|...-.-+...
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888887611 112345666777888888888887766655543
No 230
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.27 E-value=3.7 Score=41.18 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=38.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHH
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEA 559 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (800)
+.-+...|+...|.++-.+.. -|+..-|..-+.+++..+++++-.++.. ..++|..|..++.++.+.|+..+|
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~---skKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAK---SKKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHh---CCCCCCChHHHHHHHHHCCCHHHH
Confidence 344445555555555444332 3455555555555555555555554332 133444455555555555555555
Q ss_pred HHHHH
Q 003725 560 FQFFM 564 (800)
Q Consensus 560 ~~~~~ 564 (800)
..+..
T Consensus 257 ~~yI~ 261 (319)
T PF04840_consen 257 SKYIP 261 (319)
T ss_pred HHHHH
Confidence 54443
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=2.8 Score=40.24 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003725 240 CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (800)
...|++.+|..+|+....... -+...-..++.+|...|+.+.|..++..+....-.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 344555555555555544321 1233444455555555555555555554443311111111112223333333333333
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHhcC
Q 003725 320 SVLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSLHGEMTSIGI--KTNYVVSVILKCLCQMG 382 (800)
Q Consensus 320 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 382 (800)
.+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+...+. ..+.+-..++..+.-.|
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333332 23 455555566666666666666666555544322 22244444444444444
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.35 Score=48.27 Aligned_cols=98 Identities=8% Similarity=-0.077 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003725 610 KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDA 689 (800)
Q Consensus 610 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~ 689 (800)
..+++.+.-+|.+.+++..|.+.-+..+..+.. |+-...--..+|...|+++.|+..|+++++ +.|+......=+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 345677888899999999999999998887655 777777778889999999999999999997 58888888777777
Q ss_pred HhccCCCCCCCCCCcccCchhHHHHHHHHHHHHH
Q 003725 690 YSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE 723 (800)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 723 (800)
|.. ..+.......++|..|..
T Consensus 334 l~~-------------k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQ-------------KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHhh
Confidence 765 223444555777777764
No 233
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.06 E-value=7.5 Score=43.57 Aligned_cols=192 Identities=11% Similarity=0.107 Sum_probs=117.9
Q ss_pred ChhHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-hCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHH
Q 003725 86 DPGAALTFFELLK-ARGFRH--NVHTYAAIVRILC-YCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRV 161 (800)
Q Consensus 86 ~~~~A~~~f~~~~-~~~~~~--~~~~~~~~~~~l~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (800)
-...|++.++.+. +..++| +..++..+..+|. ...+.+.|+..+++.+......++.-+. ...
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k-------------~~~ 102 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK-------------FRC 102 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH-------------HHH
Confidence 3456888888887 444444 3577888899887 5889999999999886664332222111 123
Q ss_pred HHHHHHHHHccCChHHHHHHHHHccCC----CCccCHHHHHHH-HHHHHHcCChhHHHHHHHHHHhCC---CCCCHHhHH
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRP----GFVWSKFTCNFF-MNQLLKCGEVDMVLVLYEEMKSVG---FSLNQFTYD 233 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~ 233 (800)
...+++.+.+.+... |...+++.++. +..+-...+..+ +..+...+++..|.+.++.+.... ..|-...+-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 335577777776666 88888775542 122223334444 333334479999999998886432 234455555
Q ss_pred HHHHHHH--hcCChhHHHHHHHHHHhCCC---------CcChhcHHHHHHHHH--hcCChhHHHHHHHHHH
Q 003725 234 IVIKALC--KLARFEEAFDVLNEMNKAGV---------TLHGHNYSTIIQGLC--ENGRLDVGYDLLLKWS 291 (800)
Q Consensus 234 ~li~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 291 (800)
.++.+.. +.+..+++.+.++.+..... .|...+|..+++.++ ..|+++.+.+.+.++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555554 45667778787777643211 234566777777665 4677777766655554
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.04 E-value=6 Score=42.40 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 441 YTTVIDGYILRGKLVDAIGLFKKMREMG-HKPDI-----KAYNVLARGLAQ----YGSVRDALDCLKYMKKQGVKPNVIT 510 (800)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (800)
...++....-.|+-+.+++++.+..+.+ +.-.. -.|...+..++. ..+.+.|.+++..+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344444444555556655555544321 11111 122222222222 34567777888877766 445444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhccC------ccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHH-
Q 003725 511 HN-MIIEGLCTSGRVKEARAFFDDDLKEKC------LENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLL- 582 (800)
Q Consensus 511 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~- 582 (800)
+. .-.+.+...|++++|.+.|++.+.... .-.+-.+...+.-..++++|.+.|..+.+.+-- +...|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 43 333556667888888888885553221 111455666677788888888888888876433 233333333
Q ss_pred HHHHhcCCH-------HHHHHHHHHHHh
Q 003725 583 TNLLIEGYN-------NKAFKLLDTMLK 603 (800)
Q Consensus 583 ~~~~~~g~~-------~~A~~~~~~~~~ 603 (800)
.++...|+. ++|.+++.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334455666 777777776643
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.03 E-value=0.08 Score=40.28 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHc
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQT 185 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 185 (800)
..+|+.+..++...|++++|...+++.++.....+.+. +....++..+...|...|++++|++.+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH------------PDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999999999999999876622221111 113567888999999999999999998875
Q ss_pred c
Q 003725 186 D 186 (800)
Q Consensus 186 ~ 186 (800)
.
T Consensus 73 l 73 (78)
T PF13424_consen 73 L 73 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.02 E-value=0.4 Score=40.23 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 403 QVCYNVIMDALCKLGEVEEAVKLFNEMEGR---------------QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
..++..++.++++.|+++....+++..-.- ...|+..+..+++.+|+.+|++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456667777777777777777777654211 12344444444444444444444444444444322
Q ss_pred -CCCCCHHHHHHHHH
Q 003725 468 -GHKPDIKAYNVLAR 481 (800)
Q Consensus 468 -~~~p~~~~~~~l~~ 481 (800)
+++.+...|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 23333444444443
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.95 E-value=2.9 Score=43.29 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLI-PDLISYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 671 (800)
.+..++.+.|+.++|.+.+.++.+..+. ........|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455566666666666666542211 13344556666666666666666666664
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=3.4 Score=39.72 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=69.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEA 422 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (800)
.....|++.+|..+|............+...+..+|...|+.+.|..++..+....-.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666666666555555555566666666666666666665544322111111111122333333333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 003725 423 VKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM--GHKPDIKAYNVLARGLAQYG 487 (800)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 487 (800)
..+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..|+..+.--|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 3333333221 115555556666677777777777666655443 222 3333444444444333
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.76 E-value=0.19 Score=51.34 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=61.9
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 574 RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSK----TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYT 649 (800)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 649 (800)
+...+..+..+|...|++++|+..+++.++.+ |+. .+|..+..+|...|++++|...++++.+.+ . ..|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHH
Confidence 34567778888888888888888888877764 332 347778888888888888888888887741 1 1222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 003725 650 MLIH--GFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 650 ~li~--~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
.+.. .+....+.++..++++.+..-|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2111 11222344466666666666653
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.7 Score=46.20 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=66.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003725 577 SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFC 656 (800)
Q Consensus 577 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 656 (800)
++..+..++.+.+++.+|++.....+..+ ++|....-.-..+|...|+++.|+..|+++++..+. |...-+-++.+--
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 55666777777777777777777777766 456665556677888888888888888888876555 5555566666555
Q ss_pred hcCCHHH-HHHHHHHHHHc
Q 003725 657 KLNCLRE-ACNIFKDMKLR 674 (800)
Q Consensus 657 ~~g~~~~-A~~~~~~m~~~ 674 (800)
+...+.+ ..++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5554443 46778888753
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.73 E-value=11 Score=43.68 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=20.3
Q ss_pred CCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 003725 226 SLNQFTYDIVIKALCKLA--RFEEAFDVLNEMNK 257 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 257 (800)
.|+ .-...+|..|.+.+ .+++|++.......
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 355 44456778888876 67777777666654
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.67 E-value=0.81 Score=38.84 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hc
Q 003725 583 TNLLIEGYNNKAFKLLDTMLKLDA--KPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFC--KL 658 (800)
Q Consensus 583 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~--~~ 658 (800)
....+.|++++|++.|+.+...-. +-....-..++.+|.+.|++++|...+++.++..+..--..|...+.+++ +.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 334444555555555555544311 11222334455566666666666666666655433322222333333322 11
Q ss_pred ---------------CCHHHHHHHHHHHHHcCCCCC
Q 003725 659 ---------------NCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 659 ---------------g~~~~A~~~~~~m~~~g~~pd 679 (800)
+...+|..-|+++++. -|+
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~--yP~ 131 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR--YPN 131 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH--CcC
Confidence 1255677777777764 455
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=0.57 Score=44.36 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=35.9
Q ss_pred hcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHH
Q 003725 311 QNSRLVEAESVLLRMKQLRV--TPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTS 385 (800)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 385 (800)
+.|++.+|...|....+... .-....+-.|...+...|+++.|..+|..+.+.-++.+ ..+..+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34445555555555554310 01112233344555555555555555555544333222 33333334444444444
Q ss_pred HHHHHHHHHH
Q 003725 386 EAIKKFKEFK 395 (800)
Q Consensus 386 ~a~~~~~~~~ 395 (800)
+|...|+++.
T Consensus 233 ~A~atl~qv~ 242 (262)
T COG1729 233 EACATLQQVI 242 (262)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.52 E-value=2.3 Score=35.15 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003725 410 MDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMG 468 (800)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 468 (800)
+......|.-|.-.+++.++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444444444444444432 112344444444444444444444444444444443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.40 E-value=8.6 Score=41.23 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHH------HHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCH
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKF------TCNFFMNQLLK----CGEVDMVLVLYEEMKSVGFSLNQ 229 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~ 229 (800)
..+..++....=.|+-+.+++.+++..+.+-...+. .|+..+..++. ....+.|.++++.+.++ -|+.
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 345566666666777777777777766543222222 23333333322 34566777777777664 3565
Q ss_pred HhHHHHH-HHHHhcCChhHHHHHHHHHHhCC---CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 230 FTYDIVI-KALCKLARFEEAFDVLNEMNKAG---VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305 (800)
Q Consensus 230 ~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (800)
..|...- +.+...|++++|++.|+...... .+.....+-.+.-.+...+++++|.+.|..+.+.. .-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 5554332 44445777777777777654311 11223344445555666677777777777776642 1122233322
Q ss_pred HH-HHHhcCCh-------HHHHHHHHHHH
Q 003725 306 IR-EFCQNSRL-------VEAESVLLRMK 326 (800)
Q Consensus 306 i~-~~~~~g~~-------~~A~~~~~~m~ 326 (800)
.. ++...|+. ++|.++|.++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 22 23345555 55666665554
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.38 E-value=0.081 Score=32.84 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 742 CYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 742 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
+|+.|+..|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999965
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.6 Score=44.24 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 003725 267 YSTIIQGLCENGRLDVGYDLLLKWSENG--IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLR--VTPDKYVYSALIS 342 (800)
Q Consensus 267 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~ 342 (800)
|+.-+. +.+.|++..|.+.|...++.. -.-...++..|..++...|++++|..+|..+.+.- .+.-+..+--|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 443333 455666777777777777752 12234456667777777777777777777776541 1112356666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 368 (800)
...+.|+.++|..+|+++.+.-+..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 77777777777777777777655443
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.28 E-value=0.79 Score=38.49 Aligned_cols=49 Identities=2% Similarity=0.021 Sum_probs=25.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCcChhcHHHHHHHH
Q 003725 226 SLNQFTYDIVIKALCKLARFEEAFDVLNEMNK-AGVTLHGHNYSTIIQGL 274 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~ 274 (800)
.|+..+..+++.+|+.+|++..|.++++...+ .+++.+..+|..|+.-.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45555555555555555555555555555543 23444444555554443
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.26 E-value=3.1 Score=35.99 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=69.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
..++..+...+....+...++.+...+ ..+....+.++..|++.+. +.....+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 346666666677788888888777766 3566677778877776543 333333331 12334444566666666
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN-GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFC 310 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 310 (800)
+.++++.-++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777776665421 22233333333 5666666655431 14445555555443
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.19 E-value=0.9 Score=47.78 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=40.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHH
Q 003725 204 LLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVG 283 (800)
Q Consensus 204 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 283 (800)
..-.|+++.+.++...-.-.. .-+....+.+++.+-+.|..+.|+++...-. .-.....+.|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 344555555555554111000 0113335555555555666665555533211 111223344555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 284 YDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRM 325 (800)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (800)
.++.++ ..+...|..|.+...+.|+++-|++.|.+.
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 443321 123445555555555555555555555443
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.07 E-value=0.41 Score=44.94 Aligned_cols=103 Identities=11% Similarity=0.057 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcH
Q 003725 193 SKFTCNFFMNQLLK-----CGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNY 267 (800)
Q Consensus 193 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 267 (800)
|-.+|...+..+.. .+.++-.-..++.|.+.|+..|..+|+.|+..+-+-.-.. ..+|+..-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F----------- 132 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVF----------- 132 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHH-----------
Confidence 44455554444433 2344555555667777777777777777776654422111 01111110
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 268 STIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSR 314 (800)
Q Consensus 268 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (800)
-.|- .+-+-+..++++|...|+.||..+-..|++++.+.+.
T Consensus 133 ----~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 ----LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 0000 1122345566666666666666666666666655443
No 252
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.06 E-value=6.8 Score=38.79 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 003725 592 NKAFKLLDTMLKLDAKPSKTTYDKVIGALCL--AG----KIKWAHQVFDFLTRHGL---IPDLISYTMLIHGFCKLNC-- 660 (800)
Q Consensus 592 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~-- 660 (800)
++.+.+++.+.+.|+.-+..+|.+..-.... .. ...+|..+++.|.+..+ .++-..+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455677777777777666665443322222 12 24567777777775321 1223334444332 3333
Q ss_pred --HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCC
Q 003725 661 --LREACNIFKDMKLRGIKPDVV-LYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLE 737 (800)
Q Consensus 661 --~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 737 (800)
.+++..+|+.+.+.|+..+.. -+.+-+-++.. .........+..+++.+.+.++++
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~------------~~~~~~v~r~~~l~~~l~~~~~ki--------- 215 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSE------------GDDQEKVARVIELYNALKKNGVKI--------- 215 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcc------------ccchHHHHHHHHHHHHHHHcCCcc---------
Confidence 344566777777777765433 23232323222 012233556777777777766665
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 738 PDTVCYTVLIARLCYTNNLVDALIVFDEM 766 (800)
Q Consensus 738 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 766 (800)
....|..++-.-.-.+..++.++.+.++
T Consensus 216 -k~~~yp~lGlLall~~~~~~~~~~i~ev 243 (297)
T PF13170_consen 216 -KYMHYPTLGLLALLEDPEEKIVEEIKEV 243 (297)
T ss_pred -ccccccHHHHHHhcCCchHHHHHHHHHH
Confidence 6666666655444444443544444444
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.03 E-value=1.4 Score=36.14 Aligned_cols=91 Identities=21% Similarity=0.089 Sum_probs=46.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCH
Q 003725 274 LCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY---VYSALISGYCKCGNI 350 (800)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~ 350 (800)
+...|+++.|++.|.+.+.. .|.+..+||.-..++.-.|+.++|+.=+++..+..-..... .|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34455555555555555544 24455556666666655666666655555555442111111 222233345555666
Q ss_pred HHHHHHHHHHHHCCC
Q 003725 351 IKALSLHGEMTSIGI 365 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~ 365 (800)
+.|..-|+..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666655555443
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.01 E-value=5.8 Score=37.78 Aligned_cols=54 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 413 LCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+...++.+.+...+..............+..+...+...++++.|...+.....
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 334445555555555544431110233344444444444445555555444443
No 255
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.95 E-value=7.2 Score=38.64 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCH----
Q 003725 284 YDLLLKWSENGIPLNAFAYTAVIREFCQ--N----SRLVEAESVLLRMKQLRV---TPDKYVYSALISGYCKCGNI---- 350 (800)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~---- 350 (800)
..+++.+.+.|+.-+..+|.+..-.... . ....+|..+|+.|++... .++...+..|+.. ..++.
T Consensus 82 ~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~ 159 (297)
T PF13170_consen 82 LDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELA 159 (297)
T ss_pred HHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHH
Confidence 3455555666555555444432222221 1 124566677777776521 2344445444433 22222
Q ss_pred HHHHHHHHHHHHCCCCch
Q 003725 351 IKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~ 368 (800)
+.+..+|+.+.+.|....
T Consensus 160 ~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 334445555555554433
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.89 E-value=0.21 Score=32.76 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV-IYKAL 781 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 781 (800)
.+|..++..|...|++++|+++|+++++. .|+.. .+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 46788999999999999999999999964 55554 44444
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.88 E-value=16 Score=42.37 Aligned_cols=103 Identities=19% Similarity=0.174 Sum_probs=50.5
Q ss_pred hcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 003725 520 TSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLD 599 (800)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 599 (800)
..+.+++|.-.|+. .. ....-+.+|..+|+|.+|+.+..++....-. -...-..|..-+...++.-+|-+++.
T Consensus 951 ~~~~~~~Aal~Ye~-~G-----klekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 951 EELMSDEAALMYER-CG-----KLEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred HhccccHHHHHHHH-hc-----cHHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHH
Confidence 34555555555541 11 1223345555666666666555544321100 00011345555666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 600 TMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLT 637 (800)
Q Consensus 600 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 637 (800)
+.... | .-.+..|++...+++|.++-....
T Consensus 1024 e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1024 EYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 55431 1 123445666677777776655443
No 258
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.86 E-value=1.4 Score=45.27 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=45.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh----hcHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG----HNYSTIIQGLCENGRLDVGYDLLLKWSEN 293 (800)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 293 (800)
.+...++.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|...|++++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777777777888888888887777653 442 34677777777777777777777777664
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.81 E-value=6.4 Score=40.89 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVT-PDKYVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
-..+..++-+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+.-+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344555555666666666666666543211 1222444566666666666666666666543
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=93.73 E-value=3.7 Score=42.44 Aligned_cols=88 Identities=17% Similarity=0.077 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 590 YNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFK 669 (800)
Q Consensus 590 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 669 (800)
+..+|.++.++.++.+ +.|+.....+..+....|+++.|...|++....++. ....|........-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556777777777776 567777777777778888899999999988886555 56666666666778899999999999
Q ss_pred HHHHcCCCCCHH
Q 003725 670 DMKLRGIKPDVV 681 (800)
Q Consensus 670 ~m~~~g~~pd~~ 681 (800)
+.++ +.|...
T Consensus 397 ~alr--LsP~~~ 406 (458)
T PRK11906 397 KSLQ--LEPRRR 406 (458)
T ss_pred HHhc--cCchhh
Confidence 8665 456543
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.70 E-value=2.3 Score=34.97 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=71.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCch---HHHHHHHHHHHhcC
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI-GIKTN---YVVSVILKCLCQMG 382 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g 382 (800)
-++...|+++.|++.|.+.... .+.....||.-..++.-.|+.++|++-+++..+. |.... ..+..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567789999999999998875 2347788999999999999999999998888764 33322 45555666777888
Q ss_pred CHHHHHHHHHHHHHCCC
Q 003725 383 KTSEAIKKFKEFKSMGI 399 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~ 399 (800)
+.+.|..-|+..-+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888887777663
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.69 E-value=4.2 Score=35.11 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 269 TIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ 311 (800)
Q Consensus 269 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (800)
.++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 33444444444444444444444443 2333444444444443
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=13 Score=40.66 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003725 409 IMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGS 488 (800)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 488 (800)
-+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++-+... .+.-|.-...+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 3334444555555555554443 2455555555555555555555444333222 23334445555556666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 489 VRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAF 530 (800)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 530 (800)
.++|.+++.+... .. ..+.+|.+.|++.+|.+.
T Consensus 760 ~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 6666555543321 11 334555555555555443
No 264
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.60 E-value=12 Score=39.94 Aligned_cols=374 Identities=9% Similarity=-0.021 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHH-ccCChHHHHHHHHHc
Q 003725 107 HTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYC-SERMFDQALNVLFQT 185 (800)
Q Consensus 107 ~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~ 185 (800)
--|...+..=.+.|..+.+..++++.+...+ .+...|.....-++ ..|+.+...+.|+++
T Consensus 80 gyW~kfA~~E~klg~~~~s~~Vfergv~aip-------------------~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 80 GYWKKFADYEYKLGNAENSVKVFERGVQAIP-------------------LSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3455555555668889999999998877632 23444444444433 457777878888776
Q ss_pred cCC-CC-ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH---hcC------ChhHHHHHHHH
Q 003725 186 DRP-GF-VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC---KLA------RFEEAFDVLNE 254 (800)
Q Consensus 186 ~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g------~~~~A~~~~~~ 254 (800)
... |. -.+...|...+..-..++++.....+++.+++. ....|+.....|. +.. ..+++.++=..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 652 21 124456777888888899999999999999874 2223333333332 221 12222222211
Q ss_pred HHhC---C-CCcChhcHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-
Q 003725 255 MNKA---G-VTLHGHNYSTIIQGLC-ENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQL- 328 (800)
Q Consensus 255 ~~~~---~-~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 328 (800)
.... . ..+.......-+.-.. ..+.++++...+.+... ..-..+-..-...+....|+.-.+.
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhcccc
Confidence 1110 0 0000000000000000 00111111111111110 0111112222223333334443332
Q ss_pred --CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 003725 329 --RVT----PDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIF-- 400 (800)
Q Consensus 329 --~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 400 (800)
.+. ++..+|..-+.--...|+++.+.-+|+...-.--.-+..|...+.-....|+.+-|..++....+-..+
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 122 245678888888889999999999998877544444466777777777778888888777766554333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCHHHH
Q 003725 401 LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVA-NYTTVIDGYILRGKLVDAI---GLFKKMREMGHKPDIKAY 476 (800)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~ 476 (800)
|......+.+ .-..|+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++....... -+..+.
T Consensus 366 ~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~ 439 (577)
T KOG1258|consen 366 PIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGIL 439 (577)
T ss_pred cHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchh
Confidence 3333333333 234579999999999988763 3432 2222244556677777777 3333332211 122222
Q ss_pred HHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 477 NVLARGL-----AQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 477 ~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (800)
..+.--+ .-.++.+.|..++.++.+. .+++...+..++......
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 2222222 2357888888888888876 466666666666654443
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.55 E-value=12 Score=39.88 Aligned_cols=181 Identities=11% Similarity=-0.073 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 003725 507 NVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTN 584 (800)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (800)
+..+|..-+..-.+.|+.+.+.-+|++.+..- ...-|-..+.-....|+.+-|..++....+-...-.+.+...-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34556666666667788877777777544432 2223444444444557777777777666655444333333333333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHH---HHHHHHHCCCCCCHHHHHHHHH-----HH
Q 003725 585 LLIEGYNNKAFKLLDTMLKLDAKPSKT-TYDKVIGALCLAGKIKWAHQ---VFDFLTRHGLIPDLISYTMLIH-----GF 655 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~li~-----~~ 655 (800)
.-..|+.+.|..+++.+...- |+.. .-..-+....+.|+.+.+.. ++....+... +......+.- .+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRY 451 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHH
Confidence 445678888988888887653 4432 22233445567788777773 3333322111 2222222221 23
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 656 CKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 656 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
.-.++.+.|..++.++.+. ..++...|..+++-+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 3467888999999999875 45566667777776665
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=4.7 Score=35.22 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=84.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH--HHHHHHhcCCh
Q 003725 551 CEANHLEEAFQFFMTLSQRGFLMRSE-SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT-TYDK--VIGALCLAGKI 626 (800)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~~ 626 (800)
.+.+..++|+.-|.++.+.|...-+. ............|+...|+..|+++-.....|-.. -... -...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45567778888888887776542221 12233345667788888888888887654334332 1111 12345678888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 627 KWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 627 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 680 (800)
+....-.+-+...+-..-...-..|.-+-.+.|++.+|.+.|+++......|..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 888877777664433334555677777788999999999999998865445543
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=5 Score=35.10 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 415 KLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
..|.++....-.+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444443332222233333444444455555555555555443
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.18 E-value=0.33 Score=31.75 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 648 YTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 648 ~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
|..+...|.+.|++++|.++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.01 E-value=17 Score=40.08 Aligned_cols=205 Identities=10% Similarity=0.022 Sum_probs=101.1
Q ss_pred CccCHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCH
Q 003725 539 CLENYSAMVDGYCEAN-----HLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIE---GYNNKAFKLLDTMLKLDAKPSK 610 (800)
Q Consensus 539 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~ 610 (800)
.+.....+..+|.+.. +.+.|+.++.+..+.|.. .....+...+..- .+...|.++|....+.|. +..
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A 362 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILA 362 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHH
Confidence 3334455555555432 455566666666666532 2222222222222 345677777777777663 222
Q ss_pred HHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 611 TTYDKVIGALC--LAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 611 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
..+..+..... ...+.+.|..++.+..+.|. |-..--...+..+.. +..+.+.-.+..+.+.|.+--...-..++.
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~ 440 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLD 440 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHH
Confidence 22222211111 23367788888888888762 222222222333334 777777777777776654322222112222
Q ss_pred HHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhc---C-CHHHHHHHHH
Q 003725 689 AYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYT---N-NLVDALIVFD 764 (800)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~ 764 (800)
.... .. ...........+...+......| +......|+++|... + +++.|...+.
T Consensus 441 ~~~~-~~-------~~~~~~~~~~~~~~~~~~a~~~g-------------~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 441 QSEE-DL-------FSRGVISTLERAFSLYSRAAAQG-------------NADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred hccc-cc-------cccccccchhHHHHHHHHHHhcc-------------CHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 1110 00 00011224455555555544333 666667777766654 2 4777777777
Q ss_pred HHHHCC
Q 003725 765 EMIDRG 770 (800)
Q Consensus 765 ~~~~~g 770 (800)
.....+
T Consensus 500 ~a~~~~ 505 (552)
T KOG1550|consen 500 RASEQG 505 (552)
T ss_pred HHHHhh
Confidence 776554
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.73 E-value=5 Score=39.52 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=82.5
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHh
Q 003725 413 LCKLGEVEEAVKLFNEMEGR--QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM--GHKPD---IKAYNVLARGLAQ 485 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~ 485 (800)
+....+.++|+..+.....+ +...-..++..+..+.++.|.+++++..--.-++. ...-. ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888777776554 11112345666677777788777766543222211 01101 1233444444444
Q ss_pred cCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--------ccCHHHHHHHHHcc
Q 003725 486 YGSVRDALDCLKYMKKQ-GVKP---NVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--------LENYSAMVDGYCEA 553 (800)
Q Consensus 486 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~l~~~~~~~ 553 (800)
.-++.+++.+-+.-... |..| -......+..++...+.++++.+.|+..++-.. ...+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444454444433321 2222 112334456666777777888888776554221 12267777777777
Q ss_pred CCHHHHHHHHHHHH
Q 003725 554 NHLEEAFQFFMTLS 567 (800)
Q Consensus 554 g~~~~A~~~~~~~~ 567 (800)
.++++|+-...+..
T Consensus 176 ~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 176 KDYEKALFFPCKAA 189 (518)
T ss_pred HhhhHHhhhhHhHH
Confidence 77777776665543
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.67 E-value=4 Score=34.77 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=32.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003725 345 CKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALC 414 (800)
Q Consensus 345 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (800)
.+.|++++|.+.|+.+...-+... .+...++.++.+.+++++|...++++.+..+.-...-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344555555555555544433322 3444445555555555555555555555443322333444444433
No 272
>PRK11906 transcriptional regulator; Provisional
Probab=92.64 E-value=9.4 Score=39.61 Aligned_cols=159 Identities=11% Similarity=0.017 Sum_probs=86.1
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCC
Q 003725 268 STIIQGLCEN-----GRLDVGYDLLLKWSEN-GIPL-NAFAYTAVIREFCQ---------NSRLVEAESVLLRMKQLRVT 331 (800)
Q Consensus 268 ~~li~~~~~~-----g~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~ 331 (800)
..++.+.... ...+.|+.+|.+.... ...| ....|..+..++.. .....+|.+.-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 4455554432 2345677777777721 1222 23444444333322 223445566666666654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003725 332 PDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFL-DQVCYNVIM 410 (800)
Q Consensus 332 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li 410 (800)
-|......+..+..-.++++.|...|++....++....++......+.-.|+.++|.+.+++..+..+.- -.......+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 4666666666666666777777777777776655544666666666666777777777777655543221 122223333
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 003725 411 DALCKLGEVEEAVKLFNE 428 (800)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~ 428 (800)
+.|+.. .++.|.+++-+
T Consensus 416 ~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 416 DMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHcCC-chhhhHHHHhh
Confidence 355543 34555555543
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.64 E-value=6.9 Score=34.61 Aligned_cols=135 Identities=11% Similarity=0.142 Sum_probs=79.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003725 215 VLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG 294 (800)
Q Consensus 215 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 294 (800)
+.+..+.+.+++|+...+..++..+.+.|++....++ ...++-+|.......+-.+. +.+..+.++--.|.++=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 4455556677788888888888888888876554444 44445555554444432222 23444555544554430
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 295 IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI 363 (800)
Q Consensus 295 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (800)
...+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-....
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 124566777888888888888887765332 2222234566666666666666666555544
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.48 E-value=0.96 Score=42.60 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 003725 226 SLNQFTYDIVIKALCK-----LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAF 300 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 300 (800)
+.|-.+|-..+..+.. .+.++=....++.|.+.|+..|..+|+.|+..+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 3566677777776654 3455666666777888888888888888877654422 11211
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 003725 301 AYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNI-IKALSLHGEMT 361 (800)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 361 (800)
.+..+.--|- .+-+-++.++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1222211121 22345788999999999999999999999999887753 33444444443
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=4.8 Score=39.16 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=84.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH--HHHHHHHHhcCCHHH
Q 003725 416 LGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI--KAY--NVLARGLAQYGSVRD 491 (800)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~--~~l~~~~~~~g~~~~ 491 (800)
.|+..+|-..++++.+. .+.|..++.-.=.++.-.|+.+.-...++++... ..||. ..| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45556666666666654 2335566665566666677766666666666543 11222 222 222334455677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC------ccCHHHHHHHHHccCCHHHHHHHHHH
Q 003725 492 ALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC------LENYSAMVDGYCEANHLEEAFQFFMT 565 (800)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (800)
|.+.-++..+.+ +.|.....+....+...|+..++.++..+.-..-. ..+|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777666654 55666666666666677777777776652111111 11244444456666788888888865
Q ss_pred HH
Q 003725 566 LS 567 (800)
Q Consensus 566 ~~ 567 (800)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.35 E-value=10 Score=35.96 Aligned_cols=223 Identities=18% Similarity=0.111 Sum_probs=123.3
Q ss_pred CChhHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN-GIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433211 12344555555556666666666655555542 223344455555556666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCC--ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 321 VLLRMKQLRVTPDKYVYSALIS-GYCKCGNIIKALSLHGEMTSIGIK--TN-YVVSVILKCLCQMGKTSEAIKKFKEFKS 396 (800)
Q Consensus 321 ~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 396 (800)
.+.........+ ......... .+...|+++.|...+......... .. .........+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 111222222 566777777777777776542221 11 3333344446667777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 397 MGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
.........+..+...+...++++.|...+......... ....+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543323556667777777788888888888888765322 2333444444444556677777777776654
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.09 E-value=13 Score=36.65 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHH
Q 003725 518 LCTSGRVKEARAFFD 532 (800)
Q Consensus 518 ~~~~g~~~~a~~~~~ 532 (800)
+.+.+++++|.+.|+
T Consensus 256 ~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHhhcCHHHHHHHHH
Confidence 445677777777766
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.06 E-value=13 Score=36.63 Aligned_cols=129 Identities=15% Similarity=0.084 Sum_probs=64.2
Q ss_pred HhCCChhHHHHHHHHHHHhcCC-CchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccC-ChHHHHHHHHHccCC------
Q 003725 117 CYCGRQKKLESLLRELVQKMND-LNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSER-MFDQALNVLFQTDRP------ 188 (800)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~------ 188 (800)
++.|+++.|..++.++...... .+..+. .-.+++-.+.......+ +++.|...+++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~------------~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~ 71 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE------------ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK 71 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH------------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh
Confidence 4566777777776665443211 111110 11233444455555556 888887777664332
Q ss_pred --CCccCH-----HHHHHHHHHHHHcCChh---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 189 --GFVWSK-----FTCNFFMNQLLKCGEVD---MVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA 258 (800)
Q Consensus 189 --~~~~~~-----~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 258 (800)
...++. .++..++.+|...+..+ +|..+++.+.+. .+..+..+..-++.+.+.++.+++.+.+..|...
T Consensus 72 ~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 72 MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 111222 23455566666655443 344455555332 1112334444455555566677777777776654
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=4.6 Score=39.33 Aligned_cols=114 Identities=11% Similarity=-0.056 Sum_probs=50.6
Q ss_pred cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHH
Q 003725 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN---GIPLNAFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 318 (800)
.|+..+|-..++++++.- +.|...+...=.++.-.|+.+.-...++++... +.|-...+-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455555555555555432 234444444445555555555555555554433 1111111112222233345555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
++.-++..+.+ +.|...-.+..+.+--.|++.++.+.+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 55555544433 223444444444444444444444443
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.02 E-value=6.3 Score=35.41 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=52.4
Q ss_pred HHHHHHHccCChHHHHHHHHHccCCCCc--cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 003725 164 AMVKAYCSERMFDQALNVLFQTDRPGFV--WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK 241 (800)
Q Consensus 164 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 241 (800)
.+.+.+...|+++.|...++........ ....+--.|.++....|.+|+|+..++.....++ .......-...+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3445566677777777777665532111 1112223445566667777777777766655332 22223344556666
Q ss_pred cCChhHHHHHHHHHHhCC
Q 003725 242 LARFEEAFDVLNEMNKAG 259 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~ 259 (800)
.|+-++|+.-|++....+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 677777777777666654
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.85 E-value=0.15 Score=31.08 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=21.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHH
Q 003725 739 DTVCYTVLIARLCYTNNLVDALI 761 (800)
Q Consensus 739 ~~~~~~~l~~~~~~~g~~~~A~~ 761 (800)
|...|+.|+.+|...|++++|++
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhcC
Confidence 99999999999999999999963
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.82 E-value=0.39 Score=29.74 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~ 672 (800)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999999865
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.81 E-value=26 Score=39.44 Aligned_cols=190 Identities=15% Similarity=0.049 Sum_probs=101.9
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---HHH--HHHH
Q 003725 586 LIEGYNNKAFKLLDTMLKL----DAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYT---MLI--HGFC 656 (800)
Q Consensus 586 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~li--~~~~ 656 (800)
...|+.++|.++.+..+.. ...+....+..+..+..-.|++++|..+.....+..-..++..+. .+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3456667776666665543 223445556677777888899999988887666532222433333 222 2345
Q ss_pred hcCC--HHHHHHHHHHHHHcC--CCC----CHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCc
Q 003725 657 KLNC--LREACNIFKDMKLRG--IKP----DVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISP 728 (800)
Q Consensus 657 ~~g~--~~~A~~~~~~m~~~g--~~p----d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 728 (800)
..|+ +++....|....... -.| -..+...++.++.+. .+...++..-++.-......|
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~--------------~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL--------------DLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH--------------hhhhHHhhhcchhhhhcccch
Confidence 6673 333334444433221 112 223444455555441 223333333333222222222
Q ss_pred hhhhccCCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHc--cccCCCCHHHHHhhhc
Q 003725 729 DVMLGQGLEPDTV--CYTVLIARLCYTNNLVDALIVFDEMIDRGLEP----NIVIYKALLC--GCPTKKDVDKYLSLFA 799 (800)
Q Consensus 729 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~--~~~~~g~~~~A~~~~~ 799 (800)
-.. .+..|+.++...|+.++|...++++......+ +..+-...+. .....||.++|..+..
T Consensus 615 ----------~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 615 ----------LLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred ----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 222 23478899999999999999999887543333 3223233333 3356799999887654
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.74 E-value=0.21 Score=30.41 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 774 (800)
.+|..++.+|...|++++|++.|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688999999999999999999999985 4554
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.71 E-value=15 Score=36.43 Aligned_cols=228 Identities=13% Similarity=0.077 Sum_probs=135.8
Q ss_pred CChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHH
Q 003725 85 KDPGAALTFFELLKAR--GFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVS 162 (800)
Q Consensus 85 ~~~~~A~~~f~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 162 (800)
++...|+..+.....+ .....-.+|..+..+.+..|+++++...--..+....+. +.......+|
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-------------~ds~~~~ea~ 86 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-------------EDSDFLLEAY 86 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 5667777777765422 111134677778888888888877665433333221110 1112234567
Q ss_pred HHHHHHHHccCChHHHHHHHHHccC-CCCcc---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----CCCHHhHH
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDR-PGFVW---SKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGF-----SLNQFTYD 233 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~ 233 (800)
..+.+++-+.-++.+++.+-..-.. .|..+ --....++..++.-.+.++.+++.|+...+... ......+.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 7777777777777777776554332 11111 112344566777777888899988888754321 12345788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh----CCCCcCh-hcH-----HHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-C
Q 003725 234 IVIKALCKLARFEEAFDVLNEMNK----AGVTLHG-HNY-----STIIQGLCENGRLDVGYDLLLKWSE----NGIPL-N 298 (800)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~ 298 (800)
.|...|.+..++++|.-+..+..+ .++. |. .-| -.|.-++...|.+..|.+.-++..+ .|-.+ -
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 888899999999988877665543 2222 22 112 2244456677888878777766654 34211 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 299 AFAYTAVIREFCQNSRLVEAESVLLRMK 326 (800)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (800)
......+.+.|...|+.+.|..-|+...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334566778888899888887777654
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.33 E-value=3.5 Score=37.25 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 336 VYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEF 394 (800)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 394 (800)
.+..+...|++.|+.++|++.|.++.+....+. ..+..+++.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555555555444433 33344444444455555444444443
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.28 E-value=0.26 Score=30.02 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=20.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 633 FDFLTRHGLIPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 633 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 665 (800)
|++.++..+. +...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555444 6677777777777777777764
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.27 E-value=12 Score=34.30 Aligned_cols=187 Identities=18% Similarity=0.075 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 554 NHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVF 633 (800)
Q Consensus 554 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 633 (800)
|-+.-|.--|.+.....+. -+.+++.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 3344444444444433322 24456666666667777777777777777665332322222222 233567888887766
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHH
Q 003725 634 DFLTRHGLI-PDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVV 712 (800)
Q Consensus 634 ~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (800)
...-+.++. |-...|-.++ .+.-+..+|..-+.+--+ ..|..-|...|-.+.- |..
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gki---------------- 213 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKI---------------- 213 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhc----------------
Confidence 665554433 2222232222 234456666554433222 2344445444444432 110
Q ss_pred HHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 713 DASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDR 769 (800)
Q Consensus 713 ~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 769 (800)
..+.+++.+++..... .... .--.+||--|++-|...|+.++|..+|+-.+..
T Consensus 214 S~e~l~~~~~a~a~~n-~~~A---e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 214 SEETLMERLKADATDN-TSLA---EHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHhhccch-HHHH---HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1122333333211110 0000 003468888999999999999999999988753
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.88 E-value=0.26 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 774 (800)
..|..++.+|...|++++|++.|++.++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3578899999999999999999999984 4554
No 290
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.84 E-value=21 Score=36.57 Aligned_cols=145 Identities=15% Similarity=0.178 Sum_probs=105.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRG-FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALC 621 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (800)
|...+....+..-.+.|..+|-++.+.+ ..++...+++++.-+ ..|+...|..+|+--+..- +.+..--...+.-+.
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi 477 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 6667777778888999999999999988 445555666666544 5678888999998755442 233333345666778
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 622 LAGKIKWAHQVFDFLTRHGLIPD--LISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 622 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
..++-+.|..+|+..+++ +..+ ...|..+|.--..-|+...|..+=++|.+ +-|...+..+...-|.-
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 899999999999976643 2213 56899999988899999999999888886 46666665555555543
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.29 E-value=3.4 Score=39.94 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003725 611 TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL-----RGIKPDVVLYTI 685 (800)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~~ 685 (800)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667778888888888888888888887666 788888889999999999999888888764 578887777666
Q ss_pred HHHH
Q 003725 686 LCDA 689 (800)
Q Consensus 686 ll~~ 689 (800)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.25 E-value=2.8 Score=40.56 Aligned_cols=58 Identities=9% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 601 (800)
+..++..+...|+.+.+.+.++++....+. +...+..++.+|...|+...|+..|+++
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 344444555555555555555555554443 4444444444444444444444444444
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.07 E-value=0.81 Score=27.70 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 646 ISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 646 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
..|..++.+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777777777777777776
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.85 E-value=16 Score=33.50 Aligned_cols=179 Identities=15% Similarity=0.038 Sum_probs=89.9
Q ss_pred CChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 003725 173 RMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVL 252 (800)
Q Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 252 (800)
|-+.-|.--|.+..... +.-+.+||.|.--+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHH
Confidence 44444444444444432 2245678888888888999999999999888765332333333333333 357888887777
Q ss_pred HHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003725 253 NEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYD-LLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRV 330 (800)
Q Consensus 253 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 330 (800)
.+.-+.+.. |-...|--+ --+.-+..+|.. +.++..+. +..-|...|..+. .|++. .+.+++.+....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a- 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKADA- 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhc-
Confidence 666554311 211222222 223445556643 33333332 3333333332221 12211 122333333211
Q ss_pred CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 331 TP-------DKYVYSALISGYCKCGNIIKALSLHGEMTSI 363 (800)
Q Consensus 331 ~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (800)
.. =..||-.|...+...|+.++|..+|+-....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 1235555666666667777776666665554
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.66 E-value=19 Score=34.10 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--
Q 003725 402 DQVCYNVIMDALCKLGEVEEAVKLFNEMEGR-----QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM-----GH-- 469 (800)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-- 469 (800)
+..+.|++++......+.+-...+++.-.+. +-..--.|-..|...|...|.+.+..++++++.+. |-
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 3455667776666666665555555443221 11111223355677777888888888888877543 10
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHh
Q 003725 470 ----KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQ-GVKPNVITHNMIIE----GLCTSGRVKEARAFFDDDLK 536 (800)
Q Consensus 470 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~ 536 (800)
..-...|..-|+.|....+-.....++++.... ..-|.+.....+-. +..+.|++++|..-|-++.+
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 001345666777787777777777777766542 22344444333221 34456777777654443444
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.26 E-value=40 Score=37.37 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=62.9
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCcc---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVW---SKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
++-+.+.+.+++|+++-+..... .+ -.......++.|...|++++|-...-.|.. .+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 44456668888888876654432 22 233556677778888888888888777765 3556666666666666
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE 276 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 276 (800)
++......+ +.......+..+|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443333 2222223455667777776665
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.65 E-value=1.1 Score=27.05 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 646 ISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 646 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
..|..+...|...|++++|++.|++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777888888888888888776
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.51 E-value=0.84 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4789999999999999999999999864
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.28 E-value=14 Score=33.49 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 369 YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLD--QVCYNVIMDALCKLGEVEEAVKLFNEME 430 (800)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (800)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4455566666666666666666666655433322 2234455555556666666665555544
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.13 E-value=47 Score=36.83 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=54.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSL---NQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
++.+.+.+.+++|+...+..... .| -.......|..+.-.|++++|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 55666677777777766654432 22 233455666666677777777776666653 2444555555555544
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 278 GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ 311 (800)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (800)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 444322221 1111112345566666666655
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.56 E-value=53 Score=36.78 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-
Q 003725 373 VILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQI-VPDVANYTTVIDGYIL- 450 (800)
Q Consensus 373 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~- 450 (800)
.....+.-.|+++.|++.+.+ ......+.+.+...+.-|.-.+-.+... ..+..... .|....+..||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344455566777777777655 1222234444443333322211111111 22221110 0111456667777765
Q ss_pred --cCCHHHHHHHHHHHHH
Q 003725 451 --RGKLVDAIGLFKKMRE 466 (800)
Q Consensus 451 --~g~~~~A~~~~~~~~~ 466 (800)
..+..+|..+|--+..
T Consensus 338 F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 338 FEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTT-HHHHHHHHHGGGG
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 3466677777666544
No 302
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.53 E-value=20 Score=31.80 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=15.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKL 454 (800)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 454 (800)
.++.+.+.+++|+...+..+++.+.+.|++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333344445555555555555555555543
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.38 E-value=19 Score=31.46 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 414 CKLGEVEEAVKLFNEMEGRQIVPDVANYTT-VIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
.+.++.+++..++..+... .|....... -...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666655543 222221111 122344556666666666665443
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.93 E-value=8 Score=40.97 Aligned_cols=47 Identities=13% Similarity=0.000 Sum_probs=25.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 309 FCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361 (800)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 361 (800)
..+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|....
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344556666555544432 44556666666666666666666655443
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.86 E-value=23 Score=31.95 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=22.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 412 ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
.....|.+|+|+.+++.....+. .......-.+.+...|+-++|..-|.+.++.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33344444444444444443321 1111222233444444445555544444443
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.80 E-value=21 Score=31.26 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=7.3
Q ss_pred hcCChhHHHHHHHHHH
Q 003725 241 KLARFEEAFDVLNEMN 256 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~ 256 (800)
+.|++.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 4444444444444443
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.29 E-value=65 Score=36.51 Aligned_cols=162 Identities=10% Similarity=0.086 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHH----HHHcCChhHHHHHHHHHHhCCC--CCCHHhH
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQ----LLKCGEVDMVLVLYEEMKSVGF--SLNQFTY 232 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~ 232 (800)
......--..|..+|..++|++.--.+.+ +..-..++.- +...+++.......+.+...-+ .|-....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d------~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGD------PEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCC------HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHH
Confidence 45556666777777888877765443322 2222222222 2233343333333332211000 0111111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcChh-------cHHHHHH-HHHhcCChhHHHHHHHHHHhC----CCCCCHH
Q 003725 233 DIVIKALCKLARFEEAFDVLNEMNKAGVTLHGH-------NYSTIIQ-GLCENGRLDVGYDLLLKWSEN----GIPLNAF 300 (800)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 300 (800)
. +-......++.+|..+++++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+...
T Consensus 421 ~--aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 421 Q--AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred H--HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 1 222334678888888888775532222221 2222222 223467778887777766653 1233455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003725 301 AYTAVIREFCQNSRLVEAESVLLRMKQL 328 (800)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (800)
.+..+..+..-.|++++|..+..+..+.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 6666777777788888888777766554
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.75 E-value=33 Score=32.55 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRH-----GLI------PDLISYTMLIHGFCKLNCLREACNIFKDMKLRG-IKPD 679 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd 679 (800)
|-..|...|...|++.+-.+++.++... |-. .=...|..=|..|....+-.+-..+|++.+.-. --|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345666777777777777777766531 110 024556666777777777777777777765321 2343
Q ss_pred HHHHHHHHHHHh
Q 003725 680 VVLYTILCDAYS 691 (800)
Q Consensus 680 ~~~~~~ll~~~~ 691 (800)
... .-+|.-|.
T Consensus 227 PlI-mGvIRECG 237 (440)
T KOG1464|consen 227 PLI-MGVIRECG 237 (440)
T ss_pred hHH-HhHHHHcC
Confidence 333 33455554
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.74 E-value=62 Score=35.76 Aligned_cols=181 Identities=13% Similarity=0.005 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCcChhcHHHHHHHHHhc
Q 003725 210 VDMVLVLYEEMKSVGFSLNQFTYDIVIKA-----LCKLARFEEAFDVLNEMNK-------AGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 210 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 277 (800)
...|..+++...+.| +...-..+... +....+.+.|+.+|+.+.+ .| .......+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777888777765 22222222222 3355678888888888766 44 333556666666664
Q ss_pred C-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCC
Q 003725 278 G-----RLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ-NSRLVEAESVLLRMKQLRVTPDKYVYSALISGYC--KCGN 349 (800)
Q Consensus 278 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~ 349 (800)
. +.+.|..++....+.|. |+...+...+..... ..+...|.++|...-+.|.. +...+.+++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 3 55668888888887763 333333222222222 23567888888888777632 2222222221111 2346
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 350 IIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGI 399 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 399 (800)
.+.|..++.+..+.|..........+..+.. +..+.+.-.+..+.+.+.
T Consensus 380 ~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777777777763222222223333333 555555555555555443
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=19 Score=35.04 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003725 400 FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQ---IVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAY 476 (800)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 476 (800)
.....+...++..-....+++.++..+-++...- ..|+...+ +.+. ++-.-+.++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchhhH
Confidence 3344445555555555667777777766665431 11111111 1122 22233566777777777777888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 477 NVLARGLAQYGSVRDALDCLKYMKKQG 503 (800)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (800)
+.+++.+.+.+++.+|..+...|+.+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888777777776554
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.14 E-value=38 Score=36.27 Aligned_cols=131 Identities=21% Similarity=0.191 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 369 YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGY 448 (800)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 448 (800)
...+.++..+.++|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 34555666666677666666542 22211 1233456788888888776643 556788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 449 ILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEAR 528 (800)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 528 (800)
...|++..|.+.|..... |..|+-.+...|+-+....+-....+.| .. |...-+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHH
Confidence 888888888888876654 4455556666777766666666666665 22 23344667778888888
Q ss_pred HHHH
Q 003725 529 AFFD 532 (800)
Q Consensus 529 ~~~~ 532 (800)
+++.
T Consensus 742 ~lLi 745 (794)
T KOG0276|consen 742 ELLI 745 (794)
T ss_pred HHHH
Confidence 7766
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.96 E-value=2 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
.+|..++.+|...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999999874
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.84 E-value=22 Score=31.67 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 627 KWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN-----------CLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 627 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
++|..-|++++..++. ...++..+.++|...+ .+++|.+.|++... ..|+...|+.-+..+.+
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 4444445555543333 3455666666665433 25566666666665 47888888777766544
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.17 E-value=19 Score=28.49 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=29.8
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003725 177 QALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKS 222 (800)
Q Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 222 (800)
+..+.++.+...+..|++....+.++++-+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5556666666667777777777777777777777777777777753
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.98 E-value=2.6 Score=26.78 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 645 LISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 645 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
..+++.|...|...|++++|..++++.++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888899999999999999888764
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=16 Score=35.42 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003725 259 GVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG---IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY 335 (800)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 335 (800)
|......+...++.......+++.+..++-++...- ..++. +-..+++.+. .-+.++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 334445555556665566667777777766665431 11111 1222333333 235567777777777888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 336 VYSALISGYCKCGNIIKALSLHGEMTSIG 364 (800)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (800)
+++.+|+.+.+.+++..|..+.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776543
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.47 E-value=15 Score=33.19 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=44.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPD-----KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKT 384 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 384 (800)
.+.|++++|..-|.+....- ++. ...|..-..++.+.+.++.|+.-..+.++.++....++..-..+|.+..++
T Consensus 106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34455555555554444431 111 122333344555566666666666555555554444444445555566666
Q ss_pred HHHHHHHHHHHHCC
Q 003725 385 SEAIKKFKEFKSMG 398 (800)
Q Consensus 385 ~~a~~~~~~~~~~~ 398 (800)
++|++-|+++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666665543
No 318
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.38 E-value=53 Score=37.74 Aligned_cols=41 Identities=5% Similarity=0.040 Sum_probs=27.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ 311 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (800)
+-.|......+-+..+++.+....-.++....+.++..|++
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34456667777778888887776555566667777777664
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.36 E-value=9.3 Score=29.76 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003725 628 WAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILC 687 (800)
Q Consensus 628 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll 687 (800)
++.+-++.+...++.|++....+.+.++.|.+++.-|.++|+-...+ +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 34555566666667777777777777777777777777777766533 222333454444
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.31 E-value=39 Score=31.50 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=14.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCch
Q 003725 345 CKCGNIIKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 345 ~~~g~~~~A~~~~~~~~~~~~~~~ 368 (800)
+..+++.+|+++|+++.......+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 445667777777777666554443
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.11 E-value=46 Score=32.17 Aligned_cols=70 Identities=20% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL-----RGIKPDVVL 682 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~ 682 (800)
+++...+.|..+|.+.+|.++.++....++- +...|..++..|...|+--.|.+-++++.+ .|+..|...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3456677899999999999999999987655 788899999999999998888887777653 356555443
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.68 E-value=16 Score=28.85 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003725 248 AFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSE 292 (800)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 292 (800)
..+-+..+...+..|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555443
No 323
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.68 E-value=31 Score=35.87 Aligned_cols=123 Identities=12% Similarity=0.058 Sum_probs=74.9
Q ss_pred HHhcCChHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003725 620 LCLAGKIKWAHQVFDFLT---RHGLIPD-----LISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYS 691 (800)
Q Consensus 620 ~~~~g~~~~A~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 691 (800)
+...|++.+|.+.+...- ..|...+ ...||.|.-...+.|.+.-+..+|.+.+. +.|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~--------------N~c~ 315 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR--------------NSCS 315 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH--------------HHHH
Confidence 455788888877765432 1222212 23357777677788888888888887764 1222
Q ss_pred ccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 692 KINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
.+ ..|.+|..|+--.-..........+-.|...|++-.|.+.|.+.... +
T Consensus 316 qL-----------------------------~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-f 365 (696)
T KOG2471|consen 316 QL-----------------------------RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-F 365 (696)
T ss_pred HH-----------------------------hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-H
Confidence 21 11222222221122223333444566788999999999999998865 7
Q ss_pred CCCHHHHHHHHcccc
Q 003725 772 EPNIVIYKALLCGCP 786 (800)
Q Consensus 772 ~p~~~~~~~l~~~~~ 786 (800)
..++..|-.|..+|.
T Consensus 366 h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCI 380 (696)
T ss_pred hcCcHHHHHHHHHHH
Confidence 778888888887773
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.00 E-value=9.2 Score=29.78 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 003725 247 EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWS 291 (800)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 291 (800)
++.+-+..+...+..|++.+..+.+++|.+.+|+..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.77 E-value=2.5 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777665
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.61 E-value=54 Score=31.90 Aligned_cols=137 Identities=9% Similarity=0.134 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHccC-CCCccCHHHHHHHHHHHHHc-C-ChhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 003725 174 MFDQALNVLFQTDR-PGFVWSKFTCNFFMNQLLKC-G-EVDMVLVLYEEMK-SVGFSLNQFTYDIVIKALCKLARFEEAF 249 (800)
Q Consensus 174 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~ 249 (800)
.+.+|++.|+..-. ..+..|...-..+++.+... + ....-.++.+-+. ..|-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 44556666663221 23345666667777776652 2 2222223333332 3334577777888888888888888888
Q ss_pred HHHHHHHhC-CCCcChhcHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHH
Q 003725 250 DVLNEMNKA-GVTLHGHNYSTIIQGLCENGRLDVGYDLLLK-----WSENGIPLNAFAYTAVIREFC 310 (800)
Q Consensus 250 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~ 310 (800)
++++.-... +..-|...|...|......||..-...+..+ +.+.+++.+...-..+-+.+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888877654 5556778888888888888888766665543 233456666666555555443
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.47 E-value=16 Score=33.33 Aligned_cols=72 Identities=8% Similarity=-0.113 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 593 KAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR---HGLIPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 593 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~ 665 (800)
.|...|-.+...+.-.++.....|.. |....+.+++..++....+ .+-.+|+..+.+|+..|.+.|+++.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 33444444443332233333333333 3335555666665555553 222455666666666666666666553
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.67 E-value=3.6 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 745 VLIARLCYTNNLVDALIVFDEMIDRGLE 772 (800)
Q Consensus 745 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 772 (800)
.|..+|...|+.+.|.+++++..+.|-.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~ 31 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCH
Confidence 4788999999999999999999865433
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.13 E-value=14 Score=33.89 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 545 AMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603 (800)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 603 (800)
..++.+.+.+..++++...++-.+..+. +...-..++..++-.|++++|..-++-.-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3455566666677777666666655443 455555666666677777776665555443
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.97 E-value=3.6 Score=24.37 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 649 TMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 649 ~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
-.+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677778888888888887764
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.82 E-value=1.1e+02 Score=34.35 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHhC
Q 003725 300 FAYTAVIREFCQ---NSRLVEAESVLLRMKQL 328 (800)
Q Consensus 300 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 328 (800)
.-+..||..|++ ..+..+|.++|--+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 446667777765 34566666666655543
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.77 E-value=2.7 Score=23.62 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 003725 742 CYTVLIARLCYTNNLVDALIVFD 764 (800)
Q Consensus 742 ~~~~l~~~~~~~g~~~~A~~~~~ 764 (800)
....++.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567788888888888887765
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.48 E-value=2.7 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 743 YTVLIARLCYTNNLVDALIVFDEMIDR 769 (800)
Q Consensus 743 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 769 (800)
+-.++.+|.+.|++++|++.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456788999999999999999999864
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.33 E-value=27 Score=31.87 Aligned_cols=72 Identities=18% Similarity=0.068 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 281 DVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQL---RVTPDKYVYSALISGYCKCGNIIKA 353 (800)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A 353 (800)
+.|++.|-++...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555544444444444444443 44555666655555433 2245566666666666666666655
No 335
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.01 E-value=57 Score=31.44 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 003725 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC 240 (800)
Q Consensus 161 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 240 (800)
....=|.+++..+++.+++...-+-.+.--+.-......-|-.|.+.|+...+.++-.......-..+...|..++..|.
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34456788888899998887665544322122234445556678888988888888887765422233445777766665
Q ss_pred h-----cCChhHHHHHH
Q 003725 241 K-----LARFEEAFDVL 252 (800)
Q Consensus 241 ~-----~g~~~~A~~~~ 252 (800)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 68888888876
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.44 E-value=3.9 Score=23.55 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
.+|..++.++...|++++|+..++..++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3578899999999999999999999874
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.29 E-value=30 Score=27.28 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=46.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003725 617 IGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYT 684 (800)
Q Consensus 617 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 684 (800)
+..+...|+|++|..+.+.+ ..||...|-.|.. .+.|..+++..-+.+|-..| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44577889999998877655 4689998877654 68888888888888888776 56655554
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.21 E-value=32 Score=31.12 Aligned_cols=93 Identities=12% Similarity=-0.012 Sum_probs=54.2
Q ss_pred HHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHH
Q 003725 116 LCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKF 195 (800)
Q Consensus 116 l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 195 (800)
+-..|.+++|.+-+.++++..++..... ....|..-..++.+.+.++.|+.-....++.+. ....
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~--------------rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~k 169 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEE--------------RSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEK 169 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHH--------------HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHH
Confidence 3456777788877777777755443222 233455555666666777777777666666552 1222
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 003725 196 TCNFFMNQLLKCGEVDMVLVLYEEMKSV 223 (800)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 223 (800)
+...-..+|.+...++.|+.-|..+.+.
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2223344556666666666666666654
No 339
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.63 E-value=21 Score=37.86 Aligned_cols=103 Identities=17% Similarity=0.025 Sum_probs=75.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 552 EANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQ 631 (800)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 631 (800)
-.|+...|..++.......+.-.......+...+...|-..+|..++.+.+... ...+.++..+.++|....++++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357888888888777665555455667777778888888888888888877665 4556677778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH
Q 003725 632 VFDFLTRHGLIPDLISYTMLIHGFC 656 (800)
Q Consensus 632 ~~~~~~~~~~~p~~~~~~~li~~~~ 656 (800)
.|..+.+.... +...-+.|...-|
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 88888876555 6666666655433
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.56 E-value=15 Score=36.00 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=45.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
.|.+.|.+++|++.|...+... +.+++++..-..+|.+...+..|+.--+.++..+-. -+..|.--+.+-...|+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHH
Confidence 3455555555555555544432 225555655566666666666555444444332100 12223333333334455555
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 003725 664 ACNIFKDMKLRGIKPDVV 681 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~ 681 (800)
|.+-++..+. ++|+..
T Consensus 184 AKkD~E~vL~--LEP~~~ 199 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPKNI 199 (536)
T ss_pred HHHhHHHHHh--hCcccH
Confidence 5555555554 455543
No 341
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.45 E-value=1.4e+02 Score=33.69 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 382 GKTSEAIKKFKEFKSMG-IFLD--QVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAI 458 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 458 (800)
.+.+.|...+....... ..+. ..++..+.......+...+|...++...... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666553332 1111 1122333322233222445555555543221 13333344444444666776666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 459 GLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
..+..|.... .-...-..-+.+++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666664321 1133333445555555677777777776653
No 342
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.20 E-value=1.1e+02 Score=32.32 Aligned_cols=99 Identities=17% Similarity=0.064 Sum_probs=72.0
Q ss_pred CCChhcH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHH-CCCCCCHHH
Q 003725 572 LMRSESC-CKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGAL--CLAGKIKWAHQVFDFLTR-HGLIPDLIS 647 (800)
Q Consensus 572 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~p~~~~ 647 (800)
.++..++ +.++.-+...|-+.+|...+..+.... +|+...|..++..- ..+-++.-++.+++.+.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3455554 567777888889999999999988764 67777777666432 122238888999998884 66 48888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 648 YTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 648 ~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
|...+..-...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 88777766788888888887777664
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.97 E-value=32 Score=33.01 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=23.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCChHHHHHHH
Q 003725 269 TIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFC-----QNSRLVEAESVL 322 (800)
Q Consensus 269 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~ 322 (800)
.-|-.|.+.|+...+.++-..+...--.-+...|.+++..|. =.|.+++|+++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333344444444444444444444211111222444443333 256666665554
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.44 E-value=88 Score=30.41 Aligned_cols=43 Identities=30% Similarity=0.280 Sum_probs=28.6
Q ss_pred hHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 003725 88 GAALTFFELLK-ARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELV 133 (800)
Q Consensus 88 ~~A~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~ 133 (800)
.+|+.+|-.+. +.| -+.+=..++..++...+..+|.+.+...+
T Consensus 150 ~KA~ELFayLv~hkg---k~v~~~~~ie~lwpe~D~kka~s~lhTtv 193 (361)
T COG3947 150 RKALELFAYLVEHKG---KEVTSWEAIEALWPEKDEKKASSLLHTTV 193 (361)
T ss_pred hHHHHHHHHHHHhcC---CcccHhHHHHHHccccchhhHHHHHHHHH
Confidence 57888888876 444 23334467778888777777777766543
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.76 E-value=1.1e+02 Score=31.32 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=32.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003725 235 VIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSE 292 (800)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 292 (800)
...+..+.|+++...+........ .++...+..+... ..|+++++....+....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 345667788888855555444322 2344444444433 77888888777776655
No 346
>PRK09687 putative lyase; Provisional
Probab=73.16 E-value=1e+02 Score=30.49 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 421 EAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
.+...+..+... ++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.
T Consensus 192 ~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 192 DIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 444444444432 344555555556666555 34554444444432 2 123455555566654 4555555555
Q ss_pred HCCCCCCHHHHHHHHHH
Q 003725 501 KQGVKPNVITHNMIIEG 517 (800)
Q Consensus 501 ~~~~~~~~~~~~~l~~~ 517 (800)
+. .||..+....+.+
T Consensus 262 ~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 262 YK--FDDNEIITKAIDK 276 (280)
T ss_pred hh--CCChhHHHHHHHH
Confidence 43 2354444444443
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.49 E-value=29 Score=31.95 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
..+.+.+++.+|+...++-.+.. +.|..+-..++..+|-.|+|++|..-++-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444444444444444433332 123333444444455555555554444433
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.22 E-value=1e+02 Score=30.14 Aligned_cols=60 Identities=3% Similarity=-0.029 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 436 PDVANYTTVIDGYILRGKLVDAIGLFKKMREM-GHKPDIKAYNVLARGLAQYGSVRDALDC 495 (800)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 495 (800)
++..+...++..++..+++.+-.++++..... +...|...|..++......|+..-...+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34445555555555555555555555554433 3334555555666655555555444333
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.47 E-value=47 Score=27.48 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHhCCC--hhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccC
Q 003725 113 VRILCYCGR--QKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDR 187 (800)
Q Consensus 113 ~~~l~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 187 (800)
++-.+.+|- .++...-+++...+..-.++++-.-++.+..-...+++.+...-+++|-+-+++..|.++|+-++.
T Consensus 36 ~~~~~~hg~et~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 36 IKYSMEHGPETAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhhHhhcCcccHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344444 444444455444432233444444444444444555666666666666666666666666665543
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.71 E-value=25 Score=34.56 Aligned_cols=91 Identities=12% Similarity=-0.043 Sum_probs=54.1
Q ss_pred HHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLAR 244 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 244 (800)
-..-|+++|.+++|++.|....... +.+.+++..-..+|.+...+..|..--......+ ..-+..|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3455778888888888887766553 2366777777777888777776666555554321 0112234444444444555
Q ss_pred hhHHHHHHHHHHh
Q 003725 245 FEEAFDVLNEMNK 257 (800)
Q Consensus 245 ~~~A~~~~~~~~~ 257 (800)
..+|.+-++..++
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 6666666655555
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.18 E-value=49 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003725 626 IKWAHQVFDFLTRHGLIPDLISYTMLIHG 654 (800)
Q Consensus 626 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 654 (800)
+++|...|+.+.+. .|+...|+.-+..
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 34444444444432 2444444444433
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.13 E-value=11 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003725 651 LIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 651 li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555566666666666666554
No 353
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.91 E-value=2.1 Score=37.15 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=19.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHH
Q 003725 238 ALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDL 286 (800)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 286 (800)
.+.+.+.......+++.+...+...+....+.++..|++.++.+...++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 3333444444444444444333233334444444444444333333333
No 354
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.49 E-value=2.2e+02 Score=33.01 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHccCCCCccCHH-HHHHHHH---HHHHcCChhHHHHHHHHHHh
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKF-TCNFFMN---QLLKCGEVDMVLVLYEEMKS 222 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~---~~~~~g~~~~a~~~~~~m~~ 222 (800)
+..-+..+.+...+++|...-+.....+...... .+..... -+..+|++++|++.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 5666777777788999988876655433211111 1222222 25678999999999999865
No 355
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.11 E-value=1e+02 Score=28.92 Aligned_cols=77 Identities=17% Similarity=0.297 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHHHH-CC-CCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccc
Q 003725 708 NEEVVDASDFLEEMKE-ME-ISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGC 785 (800)
Q Consensus 708 ~~~~~~a~~~~~~~~~-~~-~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 785 (800)
.|+..+|+.-++.... .| +..++.+.-.-.|.+.....++.. |..+++++|.+.+.++.+.|+.|...+-+ +.+.+
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~Dii~~-~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPEDIITT-LFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHHHHHH-HHHHH
Confidence 4556666666555443 22 122333444445677777777765 45579999999999999999998876543 44444
Q ss_pred c
Q 003725 786 P 786 (800)
Q Consensus 786 ~ 786 (800)
.
T Consensus 283 K 283 (333)
T KOG0991|consen 283 K 283 (333)
T ss_pred H
Confidence 3
No 356
>PRK09687 putative lyase; Provisional
Probab=69.08 E-value=1.2e+02 Score=29.87 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003725 444 VIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
.+.++...|.. +|...+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 33444444442 34444444443
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.07 E-value=1.6e+02 Score=31.20 Aligned_cols=176 Identities=15% Similarity=0.101 Sum_probs=91.0
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 263 HGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALIS 342 (800)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 342 (800)
|.....+++..+..+....-...+..++..-| .+...|..++++|..+ .-+.-..+++++.+... .|.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44455566666666666666666666666543 2455666666666666 44555566666655432 13333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTN------YVVSVILKCLCQMGKTSEAIKKFKEFKSM-GIFLDQVCYNVIMDALCK 415 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 415 (800)
-|-+ ++.+++...|.++...-++-. ..|..+...- ..+.+....+..++... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 666666666666554333211 2222222211 23444444444444422 323334445555566777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 416 LGEVEEAVKLFNEMEGRQIVPDVANYTTVID 446 (800)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 446 (800)
..++++|++++..+.+.+-+ |..+-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 77777787777777665433 4444444443
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.57 E-value=1.7e+02 Score=31.13 Aligned_cols=63 Identities=8% Similarity=-0.015 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 003725 158 FYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSV 223 (800)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 223 (800)
+-....+++..+.+...++-...+..+|...| .+-..|..++..|..+ ..+.-..+++.+.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444455555555555555555555555443 2344455555555554 334444455544443
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.48 E-value=3.6e+02 Score=34.99 Aligned_cols=152 Identities=11% Similarity=-0.051 Sum_probs=95.8
Q ss_pred HHHHHHHccCChHHHHHHHHHccCCCC--ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 003725 164 AMVKAYCSERMFDQALNVLFQTDRPGF--VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK 241 (800)
Q Consensus 164 ~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 241 (800)
.|..+-.+.+.+.+|+-.+++-..... ......+-.+...|...+++|.+..+...-.. .|+. ..-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHHHh
Confidence 556677788899999999888311110 11222344445589999999998888774221 1222 234445667
Q ss_pred cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHHHH
Q 003725 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYT-AVIREFCQNSRLVEAES 320 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~ 320 (800)
.|++..|...|+.+.+.+ ++....++-++......|.++...-..+-..... .+....++ .=+.+--+.++++..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999998875 3346678877777777788877776555554432 22233333 23344456777777666
Q ss_pred HHH
Q 003725 321 VLL 323 (800)
Q Consensus 321 ~~~ 323 (800)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 655
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.62 E-value=21 Score=26.70 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHH
Q 003725 346 KCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKK 390 (800)
Q Consensus 346 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~ 390 (800)
..++.++|+..+....+.-..+. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443333 4445555555555555554443
No 361
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.33 E-value=2.2e+02 Score=31.78 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCccC----HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH
Q 003725 516 EGLCTSGRVKEARAFFDDDLKEKCLEN----YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYN 591 (800)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (800)
-++...|+.++|..+.++++..+++.. ...+..+|+-.|+-....+++.-.... +.-|..-...+.-++.-..++
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 345566788888888887777665543 345666788888776666665443332 221333333334445556677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHH
Q 003725 592 NKAFKLLDTMLKLDAKPSKTTYDKVI-GALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 592 ~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~ 638 (800)
+....+.+-+.+. ..|....-.++. ..+|.---..+|..+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 7777766655543 234433222222 222333345778888888876
No 362
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.87 E-value=69 Score=25.75 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 590 YNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFK 669 (800)
Q Consensus 590 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 669 (800)
..++|..+.+.+...+. ....+-..-+..+...|+|++| +.. ......||...|..|.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 35666666666665542 2222223334567788999998 221 12345678888877654 68899999998888
Q ss_pred HHHHcCCCCCHHHH
Q 003725 670 DMKLRGIKPDVVLY 683 (800)
Q Consensus 670 ~m~~~g~~pd~~~~ 683 (800)
++..+| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 887655 4444444
No 363
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.87 E-value=2.4 Score=36.89 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=48.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 270 IIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349 (800)
Q Consensus 270 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (800)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 455555667777777777777766555567777777777777776676666665211 1222334555555565
Q ss_pred HHHHHHHHH
Q 003725 350 IIKALSLHG 358 (800)
Q Consensus 350 ~~~A~~~~~ 358 (800)
++.|.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 364
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.75 E-value=1.8e+02 Score=30.19 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 657 (800)
...++.-|...|+..+|...++++--- .-....++.+++.+..+.|+-...+.+++..-..|+ .|-+.|-.+|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 455677788888888888877765211 112345677777777788877766666666666533 355666666655
Q ss_pred c
Q 003725 658 L 658 (800)
Q Consensus 658 ~ 658 (800)
-
T Consensus 587 V 587 (645)
T KOG0403|consen 587 V 587 (645)
T ss_pred h
Confidence 3
No 365
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.43 E-value=14 Score=25.33 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 744 TVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALL 782 (800)
Q Consensus 744 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 782 (800)
-.+.-++.+.|++++|.++.+.+++ ++|+..-...|-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 3567788999999999999999995 688877665554
No 366
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.38 E-value=34 Score=23.43 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003725 650 MLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDA 689 (800)
Q Consensus 650 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~ 689 (800)
.+.-++.+.|++++|.+..+.+++ +.|+..-...|-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 455577899999999999999987 58886655554443
No 367
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.02 E-value=2.6e+02 Score=31.67 Aligned_cols=451 Identities=10% Similarity=-0.031 Sum_probs=199.3
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh-hcHHHHHHHHHhcCCh
Q 003725 202 NQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG-HNYSTIIQGLCENGRL 280 (800)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 280 (800)
....+.|++..+.++..++....+ .....|..+...+ .....++....+++-.. .|-. ..-..-+..+.+.+++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT---LPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHccCH
Confidence 345778889998888888754322 2222344333322 12345544444443211 1222 2223334445566677
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH--HHHH
Q 003725 281 DVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKAL--SLHG 358 (800)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~--~~~~ 358 (800)
+...+++ .. .+.+...-.....+....|+.++|....+.+-..|. ........++..+.+.|.+.... +-+.
T Consensus 116 ~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~ 189 (644)
T PRK11619 116 RGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIR 189 (644)
T ss_pred HHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6555522 11 245666667788888889998878776666654442 34566677777777666554432 1122
Q ss_pred HHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHH
Q 003725 359 EMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKS---------MGIFLDQVCYNVIMDALC--KLGEVEEAVKLFN 427 (800)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~ 427 (800)
.+...|-. .....+...+ . .+.....+.+..+.. ..+.++...-..++-++. ...+.+.|..++.
T Consensus 190 ~al~~~~~--~lA~~l~~~l-~-~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~ 265 (644)
T PRK11619 190 LAMKAGNT--GLVTYLAKQL-P-ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIP 265 (644)
T ss_pred HHHHCCCH--HHHHHHHHhc-C-hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 22222111 1111122111 0 110111111111111 011112211111111111 2334566666666
Q ss_pred HHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 428 EMEGRQ-IVPD--VANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGV 504 (800)
Q Consensus 428 ~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 504 (800)
...... ..+. ...+..+.......+...+|...++....... +......-+..-...++++.+...+..|....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~- 342 (644)
T PRK11619 266 SLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEA- 342 (644)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-
Confidence 654332 1111 12233333333333224455555554432211 22223333334446677777777666664432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHH-HHHHHHHHHcCCCCChhcHHHHHH
Q 003725 505 KPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEA-FQFFMTLSQRGFLMRSESCCKLLT 583 (800)
Q Consensus 505 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~ 583 (800)
.-...-..-+.+++...|+.++|..+|++. .. ...-|..|...- .|..-.- ...... .... ........-+.
T Consensus 343 ~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~-a~-~~~fYG~LAa~~--Lg~~~~~~~~~~~~-~~~~--~~~~~~~~ra~ 415 (644)
T PRK11619 343 KEKDEWRYWQADLLLEQGRKAEAEEILRQL-MQ-QRGFYPMVAAQR--LGEEYPLKIDKAPK-PDSA--LTQGPEMARVR 415 (644)
T ss_pred ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hc-CCCcHHHHHHHH--cCCCCCCCCCCCCc-hhhh--hccChHHHHHH
Confidence 223334445556666677777777777743 22 112232222111 1110000 000000 0000 00011223344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLI--PDLISYTMLIHGFCKLNCL 661 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~ 661 (800)
.+...|....|...+..+... .+......+.......|.++.+..........+.. .-+..|...+..+.+.-.+
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 566778888888888777663 23444455555566677777776655432211000 0011244445555544455
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 003725 662 REACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 662 ~~A~~~~~~m~~~g~~pd~ 680 (800)
+.++-.---..+.+..|+.
T Consensus 493 ~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 493 PQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CHHHHHHHHHHhcCCCCCC
Confidence 5554433333355555554
No 368
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.77 E-value=2e+02 Score=30.35 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHccccCCCCHHHHHhhhc
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDR---GLEPNIVIYKALLCGCPTKKDVDKYLSLFA 799 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 799 (800)
+.+..|+.+|+-.|++++|..++...... -+.|........+. ...|+...|...++
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyid--L~~G~~q~al~~lk 679 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYID--LMLGRSQDALARLK 679 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHH--HhcCCCcchHHHHH
Confidence 35667899999999999999999765421 12222222222222 46677777766543
No 369
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.41 E-value=2.5e+02 Score=31.30 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHc
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQT 185 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~ 185 (800)
+..|. .+..+.-+|.++.|..++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56666 677778889999999888443
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.71 E-value=2.1e+02 Score=30.24 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=4.7
Q ss_pred HHHhcCChhHH
Q 003725 273 GLCENGRLDVG 283 (800)
Q Consensus 273 ~~~~~g~~~~a 283 (800)
..+..|+.+.+
T Consensus 74 ~A~~~g~~~~v 84 (413)
T PHA02875 74 DAVEEGDVKAV 84 (413)
T ss_pred HHHHCCCHHHH
Confidence 33444444443
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.36 E-value=28 Score=26.09 Aligned_cols=47 Identities=13% Similarity=-0.008 Sum_probs=32.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 622 LAGKIKWAHQVFDFLTRHGLIPD--LISYTMLIHGFCKLNCLREACNIF 668 (800)
Q Consensus 622 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 668 (800)
...+.++|+..|...++.-..|. ..+...++.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888887776433322 345567777888888888877764
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.83 E-value=2.2e+02 Score=30.12 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=10.8
Q ss_pred HHHHHhcCChHHHHHHHH
Q 003725 306 IREFCQNSRLVEAESVLL 323 (800)
Q Consensus 306 i~~~~~~g~~~~A~~~~~ 323 (800)
+...+..|+.+.+..+++
T Consensus 72 L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 445556777766555554
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.98 E-value=8.4 Score=32.16 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003725 656 CKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAY 690 (800)
Q Consensus 656 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 690 (800)
...|.-.+|..+|++|++.|-.|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 455777788899999999998888 477777654
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.70 E-value=1.9e+02 Score=28.72 Aligned_cols=86 Identities=12% Similarity=-0.046 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 003725 592 NKAFKLLDTMLKLDAKPSKTTYDKVIGALCL----AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN-------- 659 (800)
Q Consensus 592 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------- 659 (800)
..|...+.++...+ +......+...|.. ..++++|...|....+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35666777666655 23333334444432 3467788888888877654 22222222 344444
Q ss_pred -------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 003725 660 -------CLREACNIFKDMKLRGIKPDVVLYT 684 (800)
Q Consensus 660 -------~~~~A~~~~~~m~~~g~~pd~~~~~ 684 (800)
+...|...+......|.........
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6667777777777665544443333
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.48 E-value=13 Score=30.21 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 739 DTVCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 739 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
...-|..|+..|...|..++|++++.+..+
T Consensus 38 ~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 38 EHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 445699999999999999999999999876
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.39 E-value=71 Score=26.51 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 629 AHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 629 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
..+-++.+...++.|++.....-+.++.+.+++.-|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3445566666777888888888888888888888888888877654
No 377
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.29 E-value=2.3e+02 Score=29.26 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=48.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC------CCCchHHHHHHHHHH
Q 003725 306 IREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYC-KCGNIIKALSLHGEMTSI------GIKTNYVVSVILKCL 378 (800)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~ 378 (800)
|..+.+.|-+..|.++.+-+......-|+.....+|+.|+ +.++++--+++.+..... ..-|+..++..+..+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 5567778888888888888888765556666666676664 667777777777765441 123455555544444
Q ss_pred H
Q 003725 379 C 379 (800)
Q Consensus 379 ~ 379 (800)
.
T Consensus 190 ~ 190 (360)
T PF04910_consen 190 R 190 (360)
T ss_pred H
Confidence 3
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.31 E-value=62 Score=34.63 Aligned_cols=168 Identities=12% Similarity=0.039 Sum_probs=97.9
Q ss_pred hhHHHHHHHH-HHhCCCCcChhcHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003725 245 FEEAFDVLNE-MNKAGVTLHGHNYSTIIQGLCEN--GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESV 321 (800)
Q Consensus 245 ~~~A~~~~~~-~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 321 (800)
++...+.++- |-...--|+..+..+++.-.... ...+-+-.++..|... ..|--...|.-.-.+...|+...|...
T Consensus 551 ~~~~~~~l~~r~d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~c 629 (886)
T KOG4507|consen 551 LSYLVKELEVRMDLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIAC 629 (886)
T ss_pred HHHHHHHhhhcccccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHH
Confidence 4444455442 22222235666655554433322 1223344455545443 233222333222223346788888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 322 LLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFL 401 (800)
Q Consensus 322 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 401 (800)
+............+....|.....+.|....|-.++.+........+.++..+.+++....+++.|++.|++..+....
T Consensus 630 l~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~- 708 (886)
T KOG4507|consen 630 LQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK- 708 (886)
T ss_pred HHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-
Confidence 7776654322233445556677777787788888888877766444467778888888888999999999888877654
Q ss_pred CHHHHHHHHHHHH
Q 003725 402 DQVCYNVIMDALC 414 (800)
Q Consensus 402 ~~~~~~~li~~~~ 414 (800)
+..+-+.|...-|
T Consensus 709 ~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 709 CPECENSLKLIRC 721 (886)
T ss_pred ChhhHHHHHHHHH
Confidence 4556666665555
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.92 E-value=1.8e+02 Score=27.40 Aligned_cols=17 Identities=6% Similarity=0.331 Sum_probs=8.5
Q ss_pred ccCCHHHHHHHHHHHHH
Q 003725 552 EANHLEEAFQFFMTLSQ 568 (800)
Q Consensus 552 ~~g~~~~A~~~~~~~~~ 568 (800)
..+++.+|+++|+++..
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 380
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=53.97 E-value=2.6e+02 Score=28.57 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---ChhcHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLM---RSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 603 (800)
|..++....+.|.++.|...+.++...+... .+......+..+-..|+..+|+..++..++
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444445555555555554444432111 223333334444455555555555555554
No 381
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.45 E-value=81 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.1
Q ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003725 542 NYSAMVDGYCEANHLEEAFQFFMTLSQ 568 (800)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (800)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888899999999999988876
No 382
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.08 E-value=2.1e+02 Score=26.90 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCh-------HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003725 612 TYDKVIGALCLAGKI-------KWAHQVFDFLTRHGLIP-----DLISYTMLIHGFCKLNCLREACNIFKDMKLRG 675 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 675 (800)
.+..+...|-..|+- ..|.+.|.+..+..-.| +....-.+.....+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455566677777773 45666666666432221 23334456667789999999999999999754
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.46 E-value=61 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=24.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 739 DTVCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 739 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
|..---.++.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555556789999999999999999999864
No 384
>PRK10941 hypothetical protein; Provisional
Probab=51.19 E-value=2e+02 Score=28.08 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLR-GIKPDVVLYTILCDAYS 691 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~ll~~~~ 691 (800)
.+.+-.+|.+.++++.|..+.+.+....+. ++.-+---.-.|.+.|.+..|..=++..++. .-.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 456677889999999999999999987665 6766777777899999999999988888754 23455555555554443
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.83 E-value=37 Score=35.40 Aligned_cols=103 Identities=16% Similarity=0.032 Sum_probs=57.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 585 LLIEGYNNKAFKLLDTMLKLDAKPSKTT-YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
+...+.++.|+.++.++++.. |+... |..-..++.+.+++..|..=+..+.+..+. ..-.|---..++.+.+++.+
T Consensus 14 ~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHH
Confidence 344455666666666666653 43333 222235666777777777666666664322 12222222333444556666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
|...|+.... +.|+..-+...++-|-.
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 6666666654 57777777777776665
No 386
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.12 E-value=2.8e+02 Score=27.60 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003725 407 NVIMDALCKLGEVEEAVKLFNEM 429 (800)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~ 429 (800)
.....-||+.|+-+.|++.+...
T Consensus 108 ~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 33444555666655555555443
No 387
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.77 E-value=80 Score=32.78 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m 671 (800)
+...|++.++-.|++..|+++++.+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc
Confidence 3455677788899999999888765
No 388
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.57 E-value=2.4e+02 Score=26.53 Aligned_cols=109 Identities=20% Similarity=0.121 Sum_probs=60.3
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchh
Q 003725 655 FCKLNCLREACNIFKDMKL----RGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDV 730 (800)
Q Consensus 655 ~~~~g~~~~A~~~~~~m~~----~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 730 (800)
|.....+++|++.|.-++- .+-+|.......|--++..-.... .-....-...|.+.|++..+.+..|.
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~------~~~E~~fl~~Al~~y~~a~~~e~~~~- 159 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD------EENEKRFLRKALEFYEEAYENEDFPI- 159 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHHHHHHhCcCCC-
Confidence 3444556666665554432 223444444444444444311000 00012235668888888776554441
Q ss_pred hhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 731 MLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 731 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 774 (800)
.|.. +....-.++....+.|++++|.+.|.++...+-.+.
T Consensus 160 ---~~~~-~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 160 ---EGMD-EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred ---CCch-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 0111 234455788999999999999999999986544433
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.83 E-value=48 Score=23.65 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=15.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 003725 228 NQFTYDIVIKALCKLARFEEAFDVLNEMN 256 (800)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (800)
|-.-.-.+|.+|...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445566666666666666665554
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.28 E-value=8.2e+02 Score=32.11 Aligned_cols=315 Identities=14% Similarity=0.080 Sum_probs=163.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 269 TIIQGLCENGRLDVGYDLLLKWSENGI--PLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346 (800)
Q Consensus 269 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 346 (800)
++..+-.+.+.+..|...++.-..... ......|..+...|...++++...-+...-.. .|+ .+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 455566778888888888887421111 11223344455588888888887777664211 122 22 23455677
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (800)
.|++..|...|+.+...+++....+..+++.....|.++..+-..+.......+-....++.=+.+--+.+++|.....+
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 89999999999999888766556677777777788888877776655544332211222333344446677777766665
Q ss_pred HHHHhCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCCHHHHH
Q 003725 427 NEMEGRQIVPDVANYTTV--IDGYILRG--KLVDAIGLFKKMREMGHKP---------DIKAYNVLARGLAQYGSVRDAL 493 (800)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~a~ 493 (800)
. .. +..+|... +....+.. +.-.-.+..+.+.+.-+.| -...|..++....-..- +.-.
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~~~ 1613 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-ENSI 1613 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HHHH
Confidence 5 22 22233322 22222222 1111112222222211110 11234444333321111 0001
Q ss_pred HHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcc---------CccCHHHHHHHHHccCCHHH
Q 003725 494 DCLKYMKKQGVKPNVI------THNMIIEGLCTSGRVKEARAFFDDDLKEK---------CLENYSAMVDGYCEANHLEE 558 (800)
Q Consensus 494 ~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~ 558 (800)
+.+ . ++.++.. -|..-+..-....+..+-+-.+++.+-.. ....|....+..-++|+++.
T Consensus 1614 ~~l---~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1614 EEL---K--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHh---h--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 101 0 1111111 11111111111111222222222221111 12237778888888999999
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003725 559 AFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD 605 (800)
Q Consensus 559 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 605 (800)
|...+-+..+.+ -+..+...+.-+-..|+...|+.++++.++..
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 988776666654 34556666777888899999999999988654
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.13 E-value=1.3e+02 Score=23.69 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=31.8
Q ss_pred HhcCChHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 621 CLAGKIKWAHQVFDFLTR----HGLIPD----LISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 621 ~~~g~~~~A~~~~~~~~~----~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+.|++..|.+.+....+ .+.... ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777777555544443 222210 12223345566788999999999998874
No 392
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.04 E-value=14 Score=36.40 Aligned_cols=91 Identities=16% Similarity=0.061 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNI 667 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 667 (800)
.|.+++|++.+...++.+ ++....|..-.+++.+.+....|++=++...+.+.. ....|-.-..+-.-.|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 344555555555555443 333444444444555555555555555554443222 111222222223344555555555
Q ss_pred HHHHHHcCCCCCH
Q 003725 668 FKDMKLRGIKPDV 680 (800)
Q Consensus 668 ~~~m~~~g~~pd~ 680 (800)
+....+.++.+..
T Consensus 205 l~~a~kld~dE~~ 217 (377)
T KOG1308|consen 205 LALACKLDYDEAN 217 (377)
T ss_pred HHHHHhccccHHH
Confidence 5555555544443
No 393
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.99 E-value=2.3e+02 Score=25.73 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 003725 475 AYNVLARGLAQYGSVRDALDCLK 497 (800)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~ 497 (800)
..|.....+.+.|..+.|+.+++
T Consensus 183 ivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 183 IVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hHHHHHHHHHHcCCchHHHHHHh
Confidence 34445555566666666666655
No 394
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.65 E-value=2e+02 Score=24.94 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=24.6
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 312 NSRLVEAESVLLRMKQLRVT-PDKYVYSALISGYCKCGNIIKALSLHGEMTSIG 364 (800)
Q Consensus 312 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (800)
.++.++++.+++.|.-.... +...++.. -.+...|+|++|..+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 55566666666665543111 12222222 22345566666666666655544
No 395
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.13 E-value=1.9e+02 Score=24.57 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=38.9
Q ss_pred CchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 707 SNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 707 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
...+..+...+++++.. .-.|+ -...+...|.-++.+.|+|++++++.+.+.+ .+||..
T Consensus 47 ~~~dv~~GI~iLe~l~~-~~~~~--------~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLK-SAHPE--------RRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred chHHHHHhHHHHHHHhh-hcCcc--------cchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 35567777777777765 12221 1444555677778888889999988888884 466644
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.01 E-value=2.2e+02 Score=29.66 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=38.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSLNQF--TYDIVIKALC--KLARFEEAFDVLNEMNKA 258 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 258 (800)
+..+...+++..|.++|+++..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33456788888888888888776 544444 3444445543 466788888888877653
No 397
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.67 E-value=3.2e+02 Score=27.00 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=38.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE----NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ----N 312 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 312 (800)
..+++..+.+.+......+ +......+...|.. ..+..+|.+++....+.| .......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4566677777776665533 11233333333332 234455555555555544 22233333333333 2
Q ss_pred CChHHHHHHHHHHHhCC
Q 003725 313 SRLVEAESVLLRMKQLR 329 (800)
Q Consensus 313 g~~~~A~~~~~~m~~~~ 329 (800)
.+..+|...|+...+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 24455555555555444
No 398
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.19 E-value=2.9e+02 Score=26.27 Aligned_cols=115 Identities=17% Similarity=0.018 Sum_probs=54.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003725 312 NSRLVEAESVLLRMKQLRVTPDK-YVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKK 390 (800)
Q Consensus 312 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 390 (800)
..++..|...|.+.... .|+. ..|..-+-++.+..+++.+..--...++.....-.....+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34455555555544442 3544 33344455555566666655544444433221113444455555566666666666
Q ss_pred HHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 391 FKEFKS----MGIFLDQVCYNVIMDALCKLGEVEEAVKLFNE 428 (800)
Q Consensus 391 ~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (800)
+.+... ..+.+.....+.|..+--+.=...+..++.++
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 655532 22333344445554443333333444444443
No 399
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.95 E-value=72 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=14.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTI 270 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (800)
+.|-..++..+++.|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444555555555555544444444443
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.89 E-value=1.1e+02 Score=26.47 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=17.3
Q ss_pred HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 361 TSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIF 400 (800)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 400 (800)
.+.|.+...--..++..+.+.++.-.|.++++.+.+.++.
T Consensus 13 k~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 13 KEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 3344444433344444444444444444444444444433
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.48 E-value=3e+02 Score=28.71 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=23.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 003725 414 CKLGEVEEAVKLFNEMEGRQIVPDVA--NYTTVIDGYI--LRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~ 466 (800)
.+.+++..|.++++.+..+ ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666666665554 332222 2222333332 23344555555554443
No 402
>PRK12798 chemotaxis protein; Reviewed
Probab=43.18 E-value=4.1e+02 Score=27.72 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=36.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 003725 277 NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFC-QNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNII 351 (800)
Q Consensus 277 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 351 (800)
.|+-+++.+.+..+.-...++....|-.|+.+-. ...+...|.++|+...-. .|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 3445555555544444444444444544444332 233455555555554432 1211 11222233344555655
Q ss_pred HHHHHHHHHH
Q 003725 352 KALSLHGEMT 361 (800)
Q Consensus 352 ~A~~~~~~~~ 361 (800)
++..+-....
T Consensus 203 rf~~la~~Y~ 212 (421)
T PRK12798 203 KFEALARNYL 212 (421)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 403
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=43.15 E-value=1.7e+02 Score=23.33 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 419 VEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKY 498 (800)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (800)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+.+..-+..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34555555544443211 1122222234566778888888776655 3678777766643 356666666666666
Q ss_pred HHHCCCCCCHHH
Q 003725 499 MKKQGVKPNVIT 510 (800)
Q Consensus 499 ~~~~~~~~~~~~ 510 (800)
|...| .|....
T Consensus 94 la~sg-~p~lq~ 104 (115)
T TIGR02508 94 LAASG-DPRLQT 104 (115)
T ss_pred HHhCC-CHHHHH
Confidence 76666 443333
No 404
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=42.99 E-value=2.3e+02 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=9.2
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 003725 484 AQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~ 502 (800)
...|++.+|..+++++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555554443
No 405
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.48 E-value=3.8e+02 Score=27.15 Aligned_cols=80 Identities=6% Similarity=-0.048 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 003725 591 NNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK---LNCLREACNI 667 (800)
Q Consensus 591 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 667 (800)
.+.-+.+++++++.+ +.+......++..+.+..+.++..+.++.+....+. +...|...++.... .-.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 355677888888775 466667778888888888888888999999886555 78888888775443 2246666666
Q ss_pred HHHHH
Q 003725 668 FKDMK 672 (800)
Q Consensus 668 ~~~m~ 672 (800)
|.+.+
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 66654
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.29 E-value=93 Score=28.59 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=46.8
Q ss_pred ccCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcC
Q 003725 83 FRKDPGAALTFFELLKA-RGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMN 137 (800)
Q Consensus 83 ~~~~~~~A~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~ 137 (800)
...++.....+.+|+.+ ...+|++.+|...+.++...|+.++|..++.++..-.+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45677778888888873 46789999999999999999999999999999877644
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.38 E-value=2.4e+02 Score=24.47 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=62.9
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 003725 601 MLKLDAKPSKT--TYDKVIGALCLAGKIKWAHQVFDFLTRH------GLIPDLISYTMLIHGFCKLNC-LREACNIFKDM 671 (800)
Q Consensus 601 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m 671 (800)
|.+.+..++.. ..+.++.-...-+++.....+++.+.-. |. -+...|.+++.+..+..- .--+..+|+-|
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~-~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGW-LDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhh-cccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 44444444443 3466666666777777777777766421 12 256678888888866555 44567788888
Q ss_pred HHcCCCCCHHHHHHHHHHHhc
Q 003725 672 KLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 672 ~~~g~~pd~~~~~~ll~~~~~ 692 (800)
.+.+.+++..-|..++.+|.+
T Consensus 107 k~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHc
Confidence 888889999999999999987
No 408
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.11 E-value=3.1e+02 Score=32.71 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 003725 439 ANYTTVIDGYILRG--KLVDAIGLFKKMREM 467 (800)
Q Consensus 439 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~~ 467 (800)
.-...++.+|++.+ ++++|+.+..++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34455666777776 677777777777654
No 409
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.76 E-value=2.3e+02 Score=24.16 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 607 KPSKTTYDKVIGALCLAGK---IKWAHQVFDFLTR-HGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 607 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 680 (800)
.++..+--.+..++.++.+ ..+...+++.+.+ ..+.-.......|.-++.+.|++++++++.+.+++. +||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCc
Confidence 3455555566677776654 5566777877775 323323444455666788889999999998888873 6664
No 410
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.09 E-value=3.8e+02 Score=29.02 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=11.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 003725 304 AVIREFCQNSRLVEAESVLLRMK 326 (800)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~ 326 (800)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34444555555555555554443
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.02 E-value=4.4e+02 Score=27.21 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=56.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHH
Q 003725 582 LTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALC-LAGKIKWAHQVFDFLTRH------GLIPDLISYTMLIHG 654 (800)
Q Consensus 582 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~li~~ 654 (800)
+..+.+.|-+..|.++.+-+...+..-|+......|+.|+ ++++++--.++.+..... ..-|+. .|+..+ +
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a~S~aL-A 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-AFSIAL-A 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-HHHHHH-H
Confidence 4455666677777777777766664445555555555543 556666666666654431 113333 233322 3
Q ss_pred HHhcCCH---------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003725 655 FCKLNCL---------------REACNIFKDMKLRGIKPDVVLYTILCDAY 690 (800)
Q Consensus 655 ~~~~g~~---------------~~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 690 (800)
+...++. ++|.+.+.+.+.. -|. ....|+..+
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~--fP~--vl~~Ll~~l 234 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILR--FPW--VLVPLLDKL 234 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHH--hHH--HHHHHHHHh
Confidence 3444444 7888887777653 343 344455554
No 412
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.72 E-value=3e+02 Score=25.16 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=10.8
Q ss_pred HHhcCChhHHHHHHHHHH
Q 003725 239 LCKLARFEEAFDVLNEMN 256 (800)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~ 256 (800)
....|++++|.+-++++.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 345566666666666554
No 413
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.45 E-value=4.1e+02 Score=26.72 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 280 LDVGYDLLLKWSENGI----PLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALS 355 (800)
Q Consensus 280 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 355 (800)
.+.|.+.|+++...+. ..++.....++....+.|..+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556677777776422 34555666666667777776665566665554 3466667777777777777777777
Q ss_pred HHHHHHHCC
Q 003725 356 LHGEMTSIG 364 (800)
Q Consensus 356 ~~~~~~~~~ 364 (800)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 777777644
No 414
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.29 E-value=1.2e+02 Score=20.30 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=20.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003725 656 CKLNCLREACNIFKDMKLRGIKPDVVLYTILC 687 (800)
Q Consensus 656 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll 687 (800)
.+.|-..++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 45566666666677776666666655555544
No 415
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.11 E-value=5.1e+02 Score=27.70 Aligned_cols=101 Identities=5% Similarity=0.065 Sum_probs=66.5
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHH
Q 003725 642 IPDLISY-TMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEE 720 (800)
Q Consensus 642 ~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 720 (800)
.|+..++ +.++..+.+.|-..+|...+..+.... .|....|.-++.-=.. ....+...+..+++.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~-------------~~sc~l~~~r~~yd~ 521 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKE-------------QESCNLANIREYYDR 521 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhh-------------HhhcCchHHHHHHHH
Confidence 3455444 667777788888999999999988752 4555555555433221 112336677888888
Q ss_pred HHH-CCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 721 MKE-MEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 721 ~~~-~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
|.. .|. |+..|-....--...|..+-+-.++.++.+
T Consensus 522 a~~~fg~------------d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 522 ALREFGA------------DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhCC------------ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 874 552 666777666666678888887777777654
No 416
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.07 E-value=7.6e+02 Score=29.68 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChh
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVD 211 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 211 (800)
-.++.+.+.....|.+-+|...+-+.... ..-......++-.++.+|+++
T Consensus 1022 ~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1022 LISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchH
Confidence 34555555566666666666655433221 111223445555556665543
No 417
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.04 E-value=4.2e+02 Score=26.67 Aligned_cols=81 Identities=7% Similarity=-0.056 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhCCC----CcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 245 FEEAFDVLNEMNKAGV----TLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 245 ~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
..+|.+.|+.....+. ..++.....+.....+.|+.+.-..+++..... .+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556666666655311 234444455555555666655544444444433 245566667777777777666667
Q ss_pred HHHHHHhC
Q 003725 321 VLLRMKQL 328 (800)
Q Consensus 321 ~~~~m~~~ 328 (800)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 77776664
No 418
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.71 E-value=6.8e+02 Score=28.99 Aligned_cols=158 Identities=19% Similarity=0.140 Sum_probs=88.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003725 234 IVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNS 313 (800)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 313 (800)
++|.-+.+.|..+-|+...+.-. +-. ..+...|+++.|++.-..+- +..+|..|.......|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~---------tRF---~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER---------TRF---ELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc---------hhe---eeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Confidence 34555556666666665543211 111 12345677777766544332 5568888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 314 RLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 314 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
+.+-|+..|++.+. |..|--.|.-.|+.++-.++.+....++-. ........-.|+.++-.++++.
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D~-----~~~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRNDA-----TGQFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhhh-----HHHHHHHHHhccHHHHHHHHHh
Confidence 88888888887664 333344566677877776666555432211 1111112234666666666544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003725 394 FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGR 432 (800)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (800)
.-. . ...|.. ....|.-++|.++.++....
T Consensus 753 ~g~---~--~laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 753 GGQ---L--PLAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred cCc---c--cHHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 322 1 122221 23467778888888887664
No 419
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=38.12 E-value=5e+02 Score=27.24 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 442 TTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+-.+..|...|+..+|.+..+++..
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC
Confidence 4456677888888888877777643
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.06 E-value=1.5e+02 Score=27.31 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 641 LIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKP 678 (800)
Q Consensus 641 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 678 (800)
..|+...|..++.++...|+.++|.+..+++.. +-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 457888888888888999999999988888876 456
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.51 E-value=80 Score=18.05 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=11.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003725 625 KIKWAHQVFDFLTRHGLIPDLISYTML 651 (800)
Q Consensus 625 ~~~~A~~~~~~~~~~~~~p~~~~~~~l 651 (800)
+.+.|..+|+++....+ -+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~-~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFP-KSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCC-CChHHHHHH
Confidence 34455555555554322 144444433
No 422
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=7.2e+02 Score=28.79 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 477 NVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+..+.+...|+.++...+-.-|.+ +..++..+...+.+++|.+++.
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~ 554 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLL 554 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667777777766655543 4566777888888888888776
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.01 E-value=1.8e+02 Score=24.48 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=44.8
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 003725 73 TSEVVNKLDSFRKDPGAALTFFELLKARGFRH-NVHTYAAIVRILCYCGRQKKLESLLREL 132 (800)
Q Consensus 73 ~~~v~~~l~~~~~~~~~A~~~f~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~a~~~~~~~ 132 (800)
..+.+..-.......+.+..+|..|...|+-. -+.-|..-+..+...|++++|..++...
T Consensus 65 D~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 65 DERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp -HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 45666666655556668999999998665544 4678888899999999999999998764
No 424
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.55 E-value=4.7e+02 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 479 LARGLAQYGSVRDALDCLKYMKKQGV 504 (800)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~~ 504 (800)
+...+.+.|..+.|..+++.+.+.++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33344556777777777776666553
No 425
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.23 E-value=5.6e+02 Score=27.63 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 639 HGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 639 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.|+..+......++. ...|+...|+.+++++..
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 445555555544443 445777777777776553
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.11 E-value=5.1e+02 Score=26.84 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHccCC--CCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQTDRP--GFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSV 223 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 223 (800)
...+.-+...|...|+++.|++.|.+.+.. ..+..+..|..+|.+-.-.|+|..+...-.+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 457778888888899999999999885542 11233445666666777788888777777776653
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.45 E-value=73 Score=31.26 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 739 DTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALL 782 (800)
Q Consensus 739 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 782 (800)
....|+.-|+.-.+.|++++|+.+++++.+.|+.--..++..-+
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 34467799999999999999999999999999887666665443
No 428
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.37 E-value=98 Score=34.41 Aligned_cols=11 Identities=18% Similarity=-0.001 Sum_probs=5.5
Q ss_pred cCChhHHHHHH
Q 003725 84 RKDPGAALTFF 94 (800)
Q Consensus 84 ~~~~~~A~~~f 94 (800)
+|.++.|..++
T Consensus 161 rG~~~~a~~lL 171 (566)
T PF07575_consen 161 RGLFDQARQLL 171 (566)
T ss_dssp TT-HHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 35555555555
No 429
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.28 E-value=4e+02 Score=25.37 Aligned_cols=81 Identities=10% Similarity=0.029 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQV-CYNVIMDALCKLGEVEEAVKL 425 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~ 425 (800)
...++.|+..|.+.+..++.+..-|..-+.++.+..+++.+..--.+.++.. |+.. ..--+.........+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3455666665555555554444555555566666666666555444444432 2221 222233344445555666666
Q ss_pred HHHH
Q 003725 426 FNEM 429 (800)
Q Consensus 426 ~~~~ 429 (800)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5555
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.62 E-value=4.8e+02 Score=26.10 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 301 AYTAVIREFCQNSRLVEAESVLLRM 325 (800)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m 325 (800)
++-.....||+.|+.+.|++.+...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444445556666666655555443
No 431
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.53 E-value=7.3e+02 Score=28.10 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh----------hcHHHHHHHHHhc
Q 003725 211 DMVLVLYEEMKSVGFSLNQF---TYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG----------HNYSTIIQGLCEN 277 (800)
Q Consensus 211 ~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~li~~~~~~ 277 (800)
++-...+.+|..+--.|++- +...++-.|-...+++..+++.+.+.+ -||. ..|...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003725 278 GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ---------NSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCG 348 (800)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 348 (800)
||-++|+...-.+.+...+..+..|....+.|-. .+..+.|.+.|++.-+ +.|...+-..+...+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Q ss_pred CHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 349 NIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNE 428 (800)
Q Consensus 349 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (800)
..=+--.-++.+- ..+-..+.+.|..+...+.| |+.+| +.+-.-.+++.+|.+.-+.
T Consensus 335 ~~Fens~Elq~Ig----------mkLn~LlgrKG~leklq~YW----------dV~~y---~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 335 EHFENSLELQQIG----------MKLNSLLGRKGALEKLQEYW----------DVATY---FEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred hhccchHHHHHHH----------HHHHHHhhccchHHHHHHHH----------hHHHh---hhhhhhccCHHHHHHHHHH
Q ss_pred HHhCCCC
Q 003725 429 MEGRQIV 435 (800)
Q Consensus 429 ~~~~~~~ 435 (800)
|.+...+
T Consensus 392 mfKLk~P 398 (1226)
T KOG4279|consen 392 MFKLKPP 398 (1226)
T ss_pred HhccCCc
No 432
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.81 E-value=4.6e+02 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 298 NAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
++.....+...|.+.|++.+|+.-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555666666666666666666544
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.38 E-value=86 Score=30.79 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=27.7
Q ss_pred cCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH
Q 003725 192 WSKFT-CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD 233 (800)
Q Consensus 192 ~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 233 (800)
++..+ ||..|..-.+.|++++|+.+++|..+.|..--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 44443 5677777777778888888877777777654444443
No 434
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.00 E-value=70 Score=19.78 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003725 743 YTVLIARLCYTNNLVDALIVFD 764 (800)
Q Consensus 743 ~~~l~~~~~~~g~~~~A~~~~~ 764 (800)
+-.++-.+...|++++|+++++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4466778888999999999955
No 435
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.42 E-value=5.9e+02 Score=26.42 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=11.0
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 003725 239 LCKLARFEEAFDVLNEMNKAG 259 (800)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~ 259 (800)
+.+.+++..|.++|+++....
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~ 160 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRL 160 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcc
Confidence 344555555555555555443
No 436
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=31.94 E-value=8.4e+02 Score=28.05 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=33.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 622 LAGKIKWAHQVFDFLTRHGLIPDLI-SYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 622 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 679 (800)
..++++.++.+++.....|.. +.. .|-..++.-...|+...|..+++.....-..|+
T Consensus 474 l~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred HhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 356777777777776665444 333 455555544555666666666666665444444
No 437
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.82 E-value=2.5e+02 Score=21.97 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=3.8
Q ss_pred cCCHHHHHH
Q 003725 347 CGNIIKALS 355 (800)
Q Consensus 347 ~g~~~~A~~ 355 (800)
.|++..|.+
T Consensus 11 ~~dy~~A~d 19 (94)
T PF12862_consen 11 SGDYSEALD 19 (94)
T ss_pred cCCHHHHHH
Confidence 344444433
No 438
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=31.76 E-value=98 Score=19.10 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHccccCCCCHHHHHhhh
Q 003725 757 VDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLF 798 (800)
Q Consensus 757 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 798 (800)
++.++.+..| |+.++ ..-.+|. ...||++.|.+++
T Consensus 3 ~~~v~~L~~m---Gf~~~-~~~~AL~---~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEM---GFSRE-QAREALR---ACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHH---TS-HH-HHHHHHH---HTTTSHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHH-HHHHHHH---HcCCCHHHHHHhC
Confidence 3444555555 87766 4444454 4567999988764
No 439
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.80 E-value=1.2e+02 Score=19.10 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
.+|..|+..-...++|++|++=|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999999888763
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.78 E-value=2.6e+02 Score=21.72 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=17.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 415 KLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLV 455 (800)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (800)
..|+.+.|.+++..+. +| +..|...+.++...|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555555 32 224455555555554433
No 441
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.67 E-value=2.8e+02 Score=30.60 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKLD--AKPSKTTYDKVIGALCLAGKIK------WAHQVFDFLTRHGLIPDLISYTML 651 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 651 (800)
.++.+|...|+...+.++++.....+ -+-=...+|..++...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 77888888888888888888887653 1222335677777777777653 2333333332 44467777777
Q ss_pred HHHHH
Q 003725 652 IHGFC 656 (800)
Q Consensus 652 i~~~~ 656 (800)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65433
No 442
>PRK10941 hypothetical protein; Provisional
Probab=30.51 E-value=5.3e+02 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 340 LISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKS 396 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 396 (800)
+-.+|.+.++++.|+++.+.+....+....-+.--.-.|.+.|.+..|..-++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 334455555555555555555554443333333344445555555555555544443
No 443
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.28 E-value=3.5e+02 Score=24.56 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003725 419 VEEAVKLFNEMEGRQIVP--DVANYTTVID-----GYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGS 488 (800)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~-----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 488 (800)
++.|+.+|+.+.+.-..| -...-..++. .|.+.|.+++|.++++.... .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
No 444
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.54 E-value=4.5e+02 Score=30.31 Aligned_cols=127 Identities=15% Similarity=0.199 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003725 373 VILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRG 452 (800)
Q Consensus 373 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 452 (800)
.++..+.+.|..+-|+.+.+ |..+- ...+...|+++.|++.-..+- |..+|..|.....++|
T Consensus 625 aiIaYLqKkgypeiAL~FVk---------D~~tR---F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVK---------DERTR---FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeec---------Ccchh---eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Confidence 34444555566655555432 22221 223445688888877655542 6778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 453 KLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
+.+-|+..|+.... |..|--.|.-.|+.++..++.+.+..++ |..+. ...-.-.|++++-.+++.
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~---~qnalYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ---FQNALYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH---HHHHHHhccHHHHHHHHH
Confidence 88888888776653 3333344556777777666655554332 22221 111122466666666665
No 445
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=29.52 E-value=9e+02 Score=27.63 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHH
Q 003725 334 KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVIL 375 (800)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 375 (800)
......|+.++.+ ++...++.+++++...|..+...+..++
T Consensus 246 ~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 246 KQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3334445555444 7788888888888888777664444443
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.24 E-value=3.5e+02 Score=22.78 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCc
Q 003725 661 LREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDT 740 (800)
Q Consensus 661 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~ 740 (800)
++++.+.|..... .+-|..-...-+.--.. ..++.++|.-|...++--. -.
T Consensus 49 Lerc~~~f~~~~~--YknD~RyLkiWi~ya~~------------------~~dp~~if~~L~~~~IG~~---------~A 99 (125)
T smart00777 49 LERCIRYFEDDER--YKNDPRYLKIWLKYADN------------------CDEPRELFQFLYSKGIGTK---------LA 99 (125)
T ss_pred HHHHHHHhhhhhh--hcCCHHHHHHHHHHHHh------------------cCCHHHHHHHHHHCCcchh---------hH
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDE 765 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~ 765 (800)
..|..+...+...|++.+|.++|+.
T Consensus 100 lfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 100 LFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc
No 447
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.93 E-value=93 Score=32.60 Aligned_cols=54 Identities=7% Similarity=-0.131 Sum_probs=25.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 619 ALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 619 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+...++++.|...+.++++.... +...|..-..++.+.+++..|+.=+.++++
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 344455555555555555553222 222233223445555555555555544444
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.46 E-value=5.6e+02 Score=24.95 Aligned_cols=159 Identities=20% Similarity=0.208 Sum_probs=73.8
Q ss_pred ccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHH----HHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 003725 171 SERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLV----LYEEMKSVGFSLNQFTYDIVIKALCKLARFE 246 (800)
Q Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 246 (800)
+++++++|++++..- ...+.+.|+...|-. +.+...+.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 457788888776442 223444454433333 2333334445555555455555544433211
Q ss_pred -HHHHHHHHHHh---CC--CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 247 -EAFDVLNEMNK---AG--VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 247 -~A~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
+-.++.+.+.+ .+ ..-++.....+...|.+.|++.+|...|-.- -.++...+..++......|...++
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~-- 140 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA-- 140 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch--
Confidence 22233333322 11 2235677888889999999998888766321 122233332244333333433332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 321 VLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI 363 (800)
Q Consensus 321 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (800)
|...- ..+-.|...++...|...+....+.
T Consensus 141 ------------dlfi~-RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ------------DLFIA-RAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------------HHHHH-HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------------hHHHH-HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11111 2233456667888888877666543
No 449
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.36 E-value=46 Score=33.06 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=26.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003725 275 CENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQ 327 (800)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (800)
...|.+++|++.|...++.+ ++....|..-...+.+.++...|++=+....+
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 34455555555555555543 34444444444555555555555555444444
No 450
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.33 E-value=3.5e+02 Score=26.80 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003725 423 VKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484 (800)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (800)
.++++.+...++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 56777777778888887777777777777777888888888765 3333666666665
No 451
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.40 E-value=6e+02 Score=24.90 Aligned_cols=30 Identities=30% Similarity=0.258 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCch
Q 003725 339 ALISGYCKCGNIIKALSLHGEM----TSIGIKTN 368 (800)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~ 368 (800)
-+|..+.+.|.+.+|+.+...+ .+.+-+++
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 4677778888888887765443 34444444
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.25 E-value=44 Score=28.11 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=27.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHcc
Q 003725 749 RLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCG 784 (800)
Q Consensus 749 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 784 (800)
.+.+.|.-.+|-.+|++|++.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 466778889999999999999999986 4555543
No 453
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.82 E-value=5.7e+02 Score=24.46 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=38.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHH-cCChhHHHHHHHHHH
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLK-CGEVDMVLVLYEEMK 221 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 221 (800)
..+++.+-+.|++++....+.++...+...+..-.|.|..+|-. .|....+++++..+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34566677788888888888888877767777777777776632 445555666665554
No 454
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.52 E-value=3.2e+02 Score=23.75 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHc
Q 003725 455 VDAIGLFKKMREM 467 (800)
Q Consensus 455 ~~A~~~~~~~~~~ 467 (800)
-.|..+++++.+.
T Consensus 37 ~sAeei~~~l~~~ 49 (145)
T COG0735 37 LSAEELYEELREE 49 (145)
T ss_pred CCHHHHHHHHHHh
Confidence 3333444443333
No 455
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.46 E-value=3.5e+02 Score=21.96 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 350 IIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEM 429 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (800)
.++|..+.+.+...+.....+..+-+..+.+.|++++|+. .......||...|.+|. -.+.|--+++...+.++
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 4444444444444333222333333334444455444411 11112234444443332 23455555555555555
Q ss_pred HhC
Q 003725 430 EGR 432 (800)
Q Consensus 430 ~~~ 432 (800)
..+
T Consensus 96 a~~ 98 (116)
T PF09477_consen 96 ASS 98 (116)
T ss_dssp CT-
T ss_pred HhC
Confidence 443
No 456
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.01 E-value=3.2e+02 Score=21.24 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHhccCccCHHHHHHHHHccC
Q 003725 522 GRVKEARAFFDDDLKEKCLENYSAMVDGYCEAN 554 (800)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (800)
|+.+.|.+++. .+. ..+..|..+++++.+.|
T Consensus 50 g~~~~ar~LL~-~L~-rg~~aF~~Fl~aLreT~ 80 (88)
T cd08819 50 GNESGARELLK-RIV-QKEGWFSKFLQALRETE 80 (88)
T ss_pred CcHHHHHHHHH-Hhc-cCCcHHHHHHHHHHHcC
Confidence 44444444444 333 33333444444444333
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.51 E-value=3.5e+02 Score=24.24 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q 003725 383 KTSEAIKKFKEFKSMGIFLD 402 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~ 402 (800)
+.-.|.++++.+.+.+...+
T Consensus 40 ~hlSa~eI~~~L~~~~~~is 59 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAK 59 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCC
Confidence 33344444444444443333
No 458
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.26 E-value=1.2e+03 Score=27.85 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=69.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCC
Q 003725 623 AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN--CLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSS 700 (800)
Q Consensus 623 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~ 700 (800)
.++++...+.+....+.... .......++.+|++.+ ++++|+.+..++.+. +.......+.-.+.
T Consensus 791 ~~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f-------- 857 (928)
T PF04762_consen 791 ESKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF-------- 857 (928)
T ss_pred ccHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee--------
Confidence 34444444444444432112 3334567778888888 888999988888865 33333223333332
Q ss_pred CCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003725 701 SPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKA 780 (800)
Q Consensus 701 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 780 (800)
..++.++|+...... |.. -+++-+-..+.++.|=+-+++++.+ ++|+..-|
T Consensus 858 ----------LvDvn~Ly~~ALG~Y-------------Dl~--Lal~VAq~SQkDPKEYLPfL~~L~~--l~~~~rry-- 908 (928)
T PF04762_consen 858 ----------LVDVNKLYDVALGTY-------------DLE--LALMVAQQSQKDPKEYLPFLQELQK--LPPLYRRY-- 908 (928)
T ss_pred ----------eccHHHHHHHHhhhc-------------CHH--HHHHHHHHhccChHHHHHHHHHHHh--CChhheee--
Confidence 112333443333210 111 1445555666778888888888773 44443222
Q ss_pred HHccccCCCCHHHHHhhh
Q 003725 781 LLCGCPTKKDVDKYLSLF 798 (800)
Q Consensus 781 l~~~~~~~g~~~~A~~~~ 798 (800)
-+. .+-|++++|++-+
T Consensus 909 ~ID--~hLkRy~kAL~~L 924 (928)
T PF04762_consen 909 KID--DHLKRYEKALRHL 924 (928)
T ss_pred eHh--hhhCCHHHHHHHH
Confidence 122 3457777777654
No 459
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.05 E-value=3.1e+02 Score=25.35 Aligned_cols=63 Identities=19% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKS 222 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 222 (800)
.....++..|...|+++.|-++|.-+.+.....=...|..=+..+.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 460
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=25.04 E-value=8.5e+02 Score=25.86 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003725 239 LCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (800)
+...|+++.+.+.+....+. +.....+...+++...+.|++++|..+-+-|....+. ++.....-....-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34556666666666544332 1223445566666666666666666666666655433 222222222223334455555
Q ss_pred HHHHHHHHh
Q 003725 319 ESVLLRMKQ 327 (800)
Q Consensus 319 ~~~~~~m~~ 327 (800)
.-.|+++..
T Consensus 411 ~~~wk~~~~ 419 (831)
T PRK15180 411 YHYWKRVLL 419 (831)
T ss_pred HHHHHHHhc
Confidence 555555543
No 461
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.99 E-value=3.3e+02 Score=21.06 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 003725 250 DVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWS 291 (800)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 291 (800)
++|+-....|+..|..+|..++..+.-+=-.+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555555555555555554444444444444444443
No 462
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.96 E-value=1e+03 Score=26.80 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHH
Q 003725 334 KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVIL 375 (800)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 375 (800)
......++.++.. |+...++.+++++...|..+...+..++
T Consensus 251 ~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~il~~l~ 291 (618)
T PRK14951 251 RSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAASTLEEMA 291 (618)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3333344444333 6677777777777776666554444333
No 463
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.32 E-value=9.6e+02 Score=26.26 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHH
Q 003725 339 ALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVS 372 (800)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 372 (800)
.++.+.. .|+.+.++.+++++...|..+.....
T Consensus 251 ~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~il~ 283 (509)
T PRK14958 251 DILEALA-AKAGDRLLGCVTRLVEQGVDFSNALA 283 (509)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3444333 36667777777777766666553333
No 464
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.84 E-value=1.2e+03 Score=27.17 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
+.+..+.+...|+.++...+-.-|. -|..++.-++..+++++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555666666655444443 2556677777778888887776553
No 465
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=3.8e+02 Score=21.34 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 711 VVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALL 782 (800)
Q Consensus 711 ~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 782 (800)
...-++.++++...+... .+.....|+-.|.+.|+.+.|+.-|+.=. .+-|.+.+|--.+
T Consensus 53 ~~~le~~~ek~~ak~~~v----------pPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~fmDFL 112 (121)
T COG4259 53 TAALEKYLEKIGAKNGAV----------PPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHhhcCCCC----------CCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchhHHHHH
Confidence 344455667766654443 45566789999999999999999998765 5678887776544
No 466
>PRK09857 putative transposase; Provisional
Probab=23.72 E-value=7.4e+02 Score=24.69 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 679 (800)
+..++.-....++.++-.++++.+.+... .......++..-+.+.|.-++++++.++|+..|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~-~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSP-KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 44555544566777777777777765422 2334455667777778888889999999999988766
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.62 E-value=4.5e+02 Score=22.12 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 352 KALSLHGEMTSIGIKTN--YVVSVILKCLCQMGKTSEAIKKFK 392 (800)
Q Consensus 352 ~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~ 392 (800)
.+.++|..|...|+-.. ..|......+...|++.+|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665554443 444555555555555555555554
No 468
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=23.40 E-value=4.9e+02 Score=22.58 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003725 438 VANYTTVIDGYILRGK-LVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484 (800)
Q Consensus 438 ~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (800)
..+|..++.+..+... ---+..+|.-+.+.+.+++..-|..++.++.
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3344444444433332 2223344444444444445555555555443
No 469
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.24 E-value=1.5e+02 Score=21.42 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 232 YDIVIKALCKLARFEEAFDVLNEMNKA 258 (800)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 258 (800)
++-++..+++..-.++++..++++.+.
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQR 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333333333333333
No 470
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.21 E-value=7.2e+02 Score=24.42 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 299 AFAYTAVIREFCQNSRLVEAESVLLRMKQ----LRVTPDKYVYS-ALISGYCKCGNIIKALSLHGEMTSIGIK 366 (800)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~ 366 (800)
..++..+...|++.++.+.+.+..++..+ .|.+.|..... -|.-.|....-.++-++..+.|.+.|..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 44566666667777776666665554432 24444433221 1222233333345555555555555544
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.21 E-value=6.7e+02 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003725 373 VILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDAL 413 (800)
Q Consensus 373 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 413 (800)
.+++..-+.|+++++...++++...+..++..-.|.+-.+|
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 34455555566666666666655555555555555444444
No 472
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.11 E-value=7.3e+02 Score=27.11 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCC--CCchhhhccCC
Q 003725 660 CLREACNIFKDMKLR-GIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEME--ISPDVMLGQGL 736 (800)
Q Consensus 660 ~~~~A~~~~~~m~~~-g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~~ 736 (800)
..++..+.+++..+. |+..+......++... .|+...|...++.+...+ +..+....---
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s-----------------~GdlR~aln~Lekl~~~~~~It~~~V~~~l~ 238 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLA-----------------DGAMRDAESLLERLLALGTPVTRKQVEEALG 238 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHC
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 737 EPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVI 777 (800)
Q Consensus 737 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 777 (800)
.+.......+++++.. +++++|+.+++++...|..|....
T Consensus 239 ~~~~~~if~Li~al~~-~d~~~Al~~l~~Ll~~G~~~~~Il 278 (504)
T PRK14963 239 LPPQERLRGIAAALAQ-GDAAEALSGAAQLYRDGFAARTLV 278 (504)
T ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHH
No 473
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.98 E-value=6.9e+02 Score=27.80 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHH
Q 003725 371 VSVILKCLCQMGKTSEAIKKFKEFKSM--GIFLDQVCYNVIMDALCKLGEVE------EAVKLFNEMEGRQIVPDVANYT 442 (800)
Q Consensus 371 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~ 442 (800)
...++.+|...|++-.+..+++.+... |-..-...||..|+...+.|.++ .|.+.++... +.-|..||.
T Consensus 31 ~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~a 107 (1117)
T COG5108 31 TASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYA 107 (1117)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHH
Confidence 347888888888888888888887754 22223456777888888888653 3344444433 344677777
Q ss_pred HHHHHHHh
Q 003725 443 TVIDGYIL 450 (800)
Q Consensus 443 ~li~~~~~ 450 (800)
.|+.+-..
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 77765544
No 474
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.69 E-value=9.2e+02 Score=25.47 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhC---CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCCh--hH
Q 003725 209 EVDMVLVLYEEMKSV---GF-SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRL--DV 282 (800)
Q Consensus 209 ~~~~a~~~~~~m~~~---~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 282 (800)
..++...++...... |+ ..+......++... .|+...++.+++.+...+...+......++.......+- +.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHH
Q 003725 283 GYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCG-----NIIKALSLH 357 (800)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~ 357 (800)
-.+++..+.+. ++.++.+.|..++..|.+.|..|....-..++.++-..| ...-|...+
T Consensus 230 ~~~~isa~~ks----------------~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 230 HYDLISALHKS----------------IRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHHHHHHHHHH----------------HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q ss_pred HHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 358 GEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKS 396 (800)
Q Consensus 358 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 396 (800)
+.....|.+.. ..+...+-.++..-+-..+...+....+
T Consensus 294 ~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 294 DAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 475
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=22.38 E-value=5.7e+02 Score=25.94 Aligned_cols=86 Identities=7% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccC
Q 003725 108 TYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDR 187 (800)
Q Consensus 108 ~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 187 (800)
++..-+..+-..--.+++..+|.+++...|. ..-...-|.++.+.....|.+++.+.+|+.++.
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~----------------A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ 168 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPD----------------AKKLAKYWICLARLEPRTGPIEDVIAIYEEAIL 168 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCch----------------HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q ss_pred CCCccCHHHHHHHHHHHHHcCC
Q 003725 188 PGFVWSKFTCNFFMNQLLKCGE 209 (800)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~g~ 209 (800)
.|..|-......+++.+-..++
T Consensus 169 agAqPieElR~~l~diL~~k~~ 190 (353)
T PF15297_consen 169 AGAQPIEELRHVLVDILKMKSQ 190 (353)
T ss_pred cCCChHHHHHHHHHHHHHhhhh
No 476
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.10 E-value=4.4e+02 Score=29.07 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCccC---HHHHHHHHHccCCHHHHHHHHHHHH
Q 003725 514 IIEGLCTSGRVKEARAFFDDDLKEKCLEN---YSAMVDGYCEANHLEEAFQFFMTLS 567 (800)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (800)
+.-+|.+..++|.|.+++. ...+.++.+ -..+..+....|..++|+.+.....
T Consensus 400 l~~CYL~L~QLD~A~E~~~-EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 400 LQVCYLKLEQLDNAVEVYQ-EAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHhhHHHHHHHHHHHH-HHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3334455555555555555 222222222 2223334444555555555554444
No 477
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.79 E-value=3.6e+02 Score=21.85 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 233 DIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE-NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ 311 (800)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (800)
..++..|...|+.++|...+.++... ......+...+-.++-+ ...-+....++..+.+.+.-+....-.++-..+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred cCC--------hHHHHHHHHHHHhCCCCC
Q 003725 312 NSR--------LVEAESVLLRMKQLRVTP 332 (800)
Q Consensus 312 ~g~--------~~~A~~~~~~m~~~~~~p 332 (800)
..+ ++..-+++..+...|+-|
T Consensus 85 l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 85 LEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred hhhccccchHHHHHHHHHHHHHHHcCCcC
No 478
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.79 E-value=1.2e+03 Score=26.51 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=79.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 582 LTNLLIEGYNNKAFKLLDTMLKLDAKPSKTT--YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659 (800)
Q Consensus 582 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 659 (800)
.-++..-|+.++|..+.++|.... .|-... .-++.-+|+-.|+.....+++.-.+.- +..|+.-+..+.-++.-..
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 345667788889999999988653 222111 124556788888888888887776643 3446666666666777788
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHH
Q 003725 660 CLREACNIFKDMKLRGIKPDVVLYT--ILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE 723 (800)
Q Consensus 660 ~~~~A~~~~~~m~~~g~~pd~~~~~--~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 723 (800)
+.+....+.+-+.+. ..|-+..-. +|--+|+..| ..+|..+++-|..
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG----------------~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG----------------LKEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC----------------cHHHHHHHhhhhc
Confidence 888888888766553 566543322 3444555433 4578888877764
No 479
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.57 E-value=1e+03 Score=27.14 Aligned_cols=36 Identities=14% Similarity=-0.035 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 644 DLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 644 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 680 (800)
+......|+.++. .|+...++.+++++...|+.+..
T Consensus 245 d~~~If~LldAL~-~~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 245 DKQYLYELLTGII-NQDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHHH
Confidence 3344555565544 48889999999999988876553
No 480
>PRK09857 putative transposase; Provisional
Probab=21.35 E-value=6.7e+02 Score=24.97 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 443 TVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPN 507 (800)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (800)
.++......++.++-.++++.+.+. .........++..-+.+.|.-+++.++..+|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334445555455555555443 122233334455555555555566677777777766544
No 481
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=21.32 E-value=8.3e+02 Score=24.43 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHHHH
Q 003725 485 QYGSVRDALDCLKYMK 500 (800)
Q Consensus 485 ~~g~~~~a~~~~~~~~ 500 (800)
+.|+..+|.+.++++.
T Consensus 287 klGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLM 302 (556)
T ss_pred HhhhHHHHHHHHHHHh
Confidence 3444445544444443
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.25 E-value=6.1e+02 Score=24.42 Aligned_cols=86 Identities=10% Similarity=-0.027 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHH
Q 003725 88 GAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVK 167 (800)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~ 167 (800)
..|..-|....+ .+.-......+..-+...|++++|..+++.+.......+... +...+...+..
T Consensus 162 ~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~-------------l~~~~l~~l~~ 226 (247)
T PF11817_consen 162 EKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWS-------------LLTEVLWRLLE 226 (247)
T ss_pred HHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH-------------HHHHHHHHHHH
Q ss_pred HHHccCChHHHHHHHHHccCC
Q 003725 168 AYCSERMFDQALNVLFQTDRP 188 (800)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~~~~ 188 (800)
++...|+.+..+.+--++...
T Consensus 227 Ca~~~~~~~~~l~~~leLls~ 247 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLELLSR 247 (247)
T ss_pred HHHHhCCHHHHHHHHHHHhcC
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.20 E-value=4.5e+02 Score=22.81 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=17.0
Q ss_pred CCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 363 IGIKTNYVVSVILKCLCQM-GKTSEAIKKFKEFKSMGIFLDQVC 405 (800)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 405 (800)
.|.+....-..++..+... +..-.|.++++.+.+.+...+..|
T Consensus 11 ~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aT 54 (148)
T PRK09462 11 AGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLAT 54 (148)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHH
Confidence 3444333333333333332 233344444444444443333333
No 484
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.09 E-value=6.5e+02 Score=23.09 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHG--------------LIPDLISYTMLIHGFCKLNCLREACNIFKD 670 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 670 (800)
+++-.|-+.-++.+++++++.|.+.. ..+.-...|.....+.+.|..+.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45666777778888888888776521 223445667777888999999999998874
No 485
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=20.87 E-value=1e+02 Score=18.56 Aligned_cols=25 Identities=8% Similarity=0.281 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003725 755 NLVDALIVFDEMIDRGLEPNIVIYKAL 781 (800)
Q Consensus 755 ~~~~A~~~~~~~~~~g~~p~~~~~~~l 781 (800)
.++.|..+|++.+. +.|+..+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 57899999999985 57888888543
No 486
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=1.1e+03 Score=25.81 Aligned_cols=219 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCC-------hHHHHHHHHHccCCCCc
Q 003725 119 CGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERM-------FDQALNVLFQTDRPGFV 191 (800)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~A~~~~~~~~~~~~~ 191 (800)
...++++...|.-....+++.+..+ .-...+........+...|..+|+ +++++-.|+++....+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~-------lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~ 323 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLI-------LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFI 323 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceee-------eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccc
Q ss_pred cCHH----------------HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHH
Q 003725 192 WSKF----------------TCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC-KLARFEEAFDVLNE 254 (800)
Q Consensus 192 ~~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~ 254 (800)
|... +.-.-|..+.+.|.+..|+++-+-+.+....-|+.....+|..|+ +..+|.-.+++++.
T Consensus 324 ~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 324 PFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHhCC---CCcChhcHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003725 255 MNKAG---VTLHGHNYSTIIQGLCENGR---LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQL 328 (800)
Q Consensus 255 ~~~~~---~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (800)
....+ .-||-.--..++..|.+... -+.|...+.++... -+.+.+-|+..+.-..+ .+...++-....
T Consensus 404 ~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~----~P~vl~eLld~~~l~~d--a~~~~~k~~~~~ 477 (665)
T KOG2422|consen 404 PENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH----HPLVLSELLDELLLGDD--ALTKDLKFDGSS 477 (665)
T ss_pred HHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh----CcHHHHHHHHhccCCch--hhhhhhcccccc
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH
Q 003725 329 RVTPDKYVYSALISGYCKCGNI 350 (800)
Q Consensus 329 ~~~p~~~~~~~li~~~~~~g~~ 350 (800)
--.+...++..++..|......
T Consensus 478 a~~~e~pal~~lv~lY~~r~~~ 499 (665)
T KOG2422|consen 478 AENSELPALMLLVKLYANRNEE 499 (665)
T ss_pred cccccchHHHHHHHHHHhhhhH
No 487
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=20.47 E-value=9.7e+02 Score=29.22 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Q 003725 193 SKFTCNFFMNQLLKCGEVDMVLVLY 217 (800)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (800)
....|..+...+-+.|+.++|...-
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhc
Confidence 3445556666666666666666543
No 488
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.36 E-value=2.4e+02 Score=24.54 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 003725 74 SEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQ 122 (800)
Q Consensus 74 ~~v~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 122 (800)
..|+..|....+.+-.|..+++.+.+.+.+.+..|-...+..|...|-.
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4566666654455778888888887776666766666777777766644
No 489
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.31 E-value=2.4e+02 Score=23.05 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=21.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLAR 244 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 244 (800)
+..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 34444444444555555555555444444444444555555443
No 490
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=20.29 E-value=9.1e+02 Score=29.45 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 608 PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRH-----GL--IPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 608 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~~~~~li~~~~~~g~~~~A~ 665 (800)
|...+++.+-..+...++++.|.++.+.+... |. ..+..+|..+...+...+++..|.
T Consensus 1055 ~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1055 PTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 33334444444444557777777777776641 11 114445555555555555544443
No 491
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=8.4e+02 Score=24.00 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMRE----MGHKPDIKAYN-VLARGLAQYGSVRDALDCLKYMKKQGVKPNV--- 508 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 508 (800)
....+..+...|++-++.+.+.+..++..+ .|.+.|...-. .|.-.+....-.++.++..+.|.++|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 356677788888888888888777666543 35554443211 1222333344467777778888888755442
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003725 509 -ITHNMIIEGLCTSGRVKEARAFFDDDLKE 537 (800)
Q Consensus 509 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (800)
.+|..+. +....++.+|-.++.+.+..
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 2332222 22335677777777655553
Done!