Query 003725
Match_columns 800
No_of_seqs 765 out of 3884
Neff 11.3
Searched_HMMs 29240
Date Tue Mar 26 18:00:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003725.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1774-1778//hhsearch_pdb/003725hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 310.6 41.6 501 160-785 85-594 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 301.9 43.8 494 85-681 67-584 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 214.5 24.1 43 198-240 30-72 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 211.4 24.7 184 162-345 29-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 204.2 47.8 382 235-625 5-388 (388)
6 2gw1_A Mitochondrial precursor 1.0 1 1 189.9 41.1 454 160-683 7-485 (514)
7 2gw1_A Mitochondrial precursor 1.0 1 1 188.2 40.6 196 474-673 238-443 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 180.6 39.4 130 543-674 347-491 (537)
9 3fp2_A TPR repeat-containing p 1.0 1 1 176.6 35.5 436 160-642 26-494 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 172.7 39.8 380 173-562 6-447 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=310.62 Aligned_cols=501 Identities=13% Similarity=0.061 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999998039967999999970079996599989999999997499469999999998589987878699999998
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKAL 239 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 239 (800)
..+..++..|.+.|++++|+.+|+++... .|+..++..++..+.+.|+++.|..+|+.+... +++..+++.++..|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHH
T ss_conf 99999999998745834799999999960--899357999999999747699999999987335--45650899999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 93099428999999998679886843099999999934992389999999986999988877999999999539957999
Q 003725 240 CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (800)
.+.|++++|.++|+++. |+.. ....+...++. ..+.+.+..+|+.++.++.+.|++++|.
T Consensus 161 ~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-----------DGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp HHTTCHHHHHHHHCSSC-----TTC--------------CC-----------CSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-----CCCC----CCCCCCCCCCC-----------CCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98866999999984248-----8632----23234334321-----------1235125899999889999839989999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999985999999998999999999149978999999999778987427799999999964997899999999987899
Q 003725 320 SVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGI 399 (800)
Q Consensus 320 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 399 (800)
.+|++|.+.+ +.+...+..++..+...+..+.+ ....+ . +..+...+.
T Consensus 221 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~--~~~~l---~--------------------------~~~~~~~~~ 268 (597)
T 2xpi_A 221 ECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWD--LVLKL---N--------------------------YSTYSKEDA 268 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHH--HHHHS---C--------------------------THHHHGGGH
T ss_pred HHHHHHHHHC-CHHHHHHHHHHHHHCCCCHHHHH--HHHHC---C--------------------------CCCCCCCHH
T ss_conf 9999999729-32569999999850346156789--99865---7--------------------------742344308
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 87887799999999806997899999999983999979888999999999259978999999999875999899999999
Q 003725 400 FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVL 479 (800)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (800)
.....+|+.++..|.+.|++++|.++++.+... +++..++..++..|.+.|++++|..+|+++.+.+.. +..++..+
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 345 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLH 345 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-CHHHHHHH
T ss_conf 899999999999980731399999999876438--830999999999999846899999999999972955-37999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHCCCCHH
Q ss_conf 9999952999999999999987899999999999999999539988999999999743--69457799999998049989
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKE--KCLENYSAMVDGYCEANHLE 557 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 557 (800)
+..+...|+.++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|++++.. .+...|..++..|.+.|+++
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 999998277779999999998518-3547999999999998356999999999998729777899999999999757779
Q ss_pred HHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999987698888200898999999519977999999999868999898789999999994299689999999999
Q 003725 558 EAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLT 637 (800)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 637 (800)
+|+++|+++...+ +.+..++..++.+|.+.|++++|..+|+.+.
T Consensus 425 ~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 425 QAISAYTTAARLF------------------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHTT------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999868------------------------------------1343899999999998579999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 8999989999999999998109999999999999985----99978--98899999988402778999998755571328
Q 003725 638 RHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLR----GIKPD--VVLYTILCDAYSKINKRGSSSSPHTLRSNEEV 711 (800)
Q Consensus 638 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~pd--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 711 (800)
+..+. +...|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..+...|.. .+++
T Consensus 469 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~---------------~g~~ 532 (597)
T 2xpi_A 469 ALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK---------------LKMY 532 (597)
T ss_dssp HHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH---------------TTCH
T ss_pred HHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---------------HCCH
T ss_conf 84888-7679999999999818999999999999985323454535499999999999998---------------0479
Q ss_pred HHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHCCC
Q ss_conf 779999999997799940010268898720299999998702997889999999987799977-98899998221
Q 003725 712 VDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN-IVIYKALLCGC 785 (800)
Q Consensus 712 ~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 785 (800)
++|...++++.+.+ |+ +..+|..++.+|.+.|++++|.+.++++.+. .|+ ...+..+...|
T Consensus 533 ~~A~~~~~~~~~~~--p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 533 DAAIDALNQGLLLS--TN---------DANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHHS--SC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC--CC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHH
T ss_conf 99999999999738--99---------7389999999999817899999999999720--888748999999987
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=301.94 Aligned_cols=494 Identities=12% Similarity=0.032 Sum_probs=268.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99568999999987389998999999999999808982689999999999517871679999998742488724799999
Q 003725 85 KDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDA 164 (800)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (800)
+....+...|..+. .++...|..++..+.+.|++++|..++.+++...+ +..++..
T Consensus 67 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--------------------~~~~~~~ 122 (597)
T 2xpi_A 67 GSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG--------------------NPNDAFW 122 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--------------------CHHHHHH
T ss_pred CCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------------------CCHHHHH
T ss_conf 76678877546633----78999999999999874583479999999996089--------------------9357999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---------------CCCCCH
Q ss_conf 99999803996799999997007999659998999999999749946999999999858---------------998787
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSV---------------GFSLNQ 229 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~ 229 (800)
++..|...|++++|..+|+.+... .++..+++.++..|.+.|++++|..+|+++... +.+.+.
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 999999747699999999987335--456508999999999886699999998424886322323433432112351258
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHH
Q ss_conf 8699999998930994289999999986798868430999999999349923899--99-99998699998887799999
Q 003725 230 FTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGY--DL-LLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~li 306 (800)
.+|..++..|.+.|++++|.++|++|.+.+. .+...+..+...+...+..+.+. .+ +..+...+......+|..++
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999988999983998999999999997293-256999999985034615678999865774234430889999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99995399579999999998599999999899999999914997899999999977898742779999999996499789
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE 386 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 386 (800)
..|.+.|++++|..+|+++.+. +++..++..++..|.+.|++++|..+++++...++.
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------- 337 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-------------------- 337 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------------------
T ss_conf 9980731399999999876438--830999999999999846899999999999972955--------------------
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999878998788779999999980699789999999998399997988899999999925997899999999987
Q 003725 387 AIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+..++..++.++.+.|++++|..+++.+.... +.+..++..++..|.+.|++++|..+|+++.+
T Consensus 338 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 338 ---------------NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp ---------------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf ---------------37999999999998277779999999998518-35479999999999983569999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 59998999999999999952999999999999987899999999999999999539988999999999743694577999
Q 003725 467 MGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAM 546 (800)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 546 (800)
... .+..+|..++..+.+.|++++|..+++.+.+.+ +.+..++..++.+|.+.|++++|.+.|++++.
T Consensus 402 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 469 (597)
T 2xpi_A 402 MDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA---------- 469 (597)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------
T ss_pred HCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------
T ss_conf 297-778999999999997577799999999999868-13438999999999985799999999999998----------
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHH
Q ss_conf 9999804998999999999987698888200898999999519977999999999868----99989--87899999999
Q 003725 547 VDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKL----DAKPS--KTTYDKVIGAL 620 (800)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~ 620 (800)
..+. +..++..++..+...|+.++|.++++++.+. +..|+ ..++..++.+|
T Consensus 470 ----------------------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 470 ----------------------LFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp ----------------------HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred ----------------------HCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf ----------------------4888-76799999999998189999999999999853234545354999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 9429968999999999989999899999999999981099999999999999859997898
Q 003725 621 CLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVV 681 (800)
Q Consensus 621 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 681 (800)
...|++++|...++.+.+.++. +...|..++.+|.+.|++++|.+.|+++.+. .|+..
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCCH
T ss_conf 9804799999999999973899-7389999999999817899999999999720--88874
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=214.48 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999974994699999999985899878786999999989
Q 003725 198 NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC 240 (800)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 240 (800)
+.+++.+++.|++++|..+|++|.+.|+.||..+|+.+|.+|+
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~ 72 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCS 72 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 9999999859899999999999998189987839999999998
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=211.37 Aligned_cols=184 Identities=15% Similarity=0.190 Sum_probs=81.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 999999998039967999999970079996599989999999997499---------46999999999858998787869
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGE---------VDMVLVLYEEMKSVGFSLNQFTY 232 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~~ 232 (800)
+..+|..|++.|++++|+.+|++|.+.|+.|+..+||.++.++.+.+. ++.|..+|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999859899999999999998189987839999999998578304333212499999999999980899989999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999989309942899999999867988684309999999993499238999999998699998887799999999953
Q 003725 233 DIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQN 312 (800)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 312 (800)
+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999998469778899999999972898861110489999998889999999999998629999999999999998538
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 995799999999985999999998999999999
Q 003725 313 SRLVEAESVLLRMKQLRVTPDKYVYSALISGYC 345 (800)
Q Consensus 313 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 345 (800)
|++++|.+++++|.+.|..|+..||+.++..++
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 989999999999999489969999999999983
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=204.20 Aligned_cols=382 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99998930994289999999986798868430999999999349923899999999869999888779999999995399
Q 003725 235 VIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSR 314 (800)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (800)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 7999987799999999999999849-7889999999999998689999999999997619-7866999999999987799
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 57999999999859999999989999999991499789999999997789874277999999999649978999999999
Q 003725 315 LVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEF 394 (800)
Q Consensus 315 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 394 (800)
+++|...|+++.... +.+...+..++..+...|++++|...++++....+.....+..+...+...|++++|...++++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999998749-6539999999999998589999999999999759896899999999999846899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 87899878877999999998069978999999999839999798889999999992599789999999998759998999
Q 003725 395 KSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIK 474 (800)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 474 (800)
....+. +..++..+...+...|++++|...++++...++. +...+..+...+...|++++|...+.+....... +..
T Consensus 162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHH
T ss_conf 872989-7899999999999859999999999999855988-6799999999999857899999999999852968-789
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHC
Q ss_conf 99999999995299999999999998789999999999999999953998899999999974--3694577999999980
Q 003725 475 AYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK--EKCLENYSAMVDGYCE 552 (800)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~ 552 (800)
++..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...+++.+. ..+...+..+...+.+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999998688999999999998649-99889999999999986997999999999986494449999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 4998999999999987698888200898999999519977999999999868999898789999999994299
Q 003725 553 ANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGK 625 (800)
Q Consensus 553 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 625 (800)
.|++++|...++++.+..+. +...+..+...+...|+.++|+..++++++.. +.....+..+...+...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
T ss_conf 48999999999999860987-39999779999998688899999999998619-9978999859999987459
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=189.86 Aligned_cols=454 Identities=9% Similarity=-0.052 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999998039967999999970079996599989999999997499469999999998589987878699999998
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKAL 239 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 239 (800)
..+......+...|++++|+..|+++...+ |+..++..++.++...|+++.|...++++.+.. +.+...+..+...+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_conf 999998789998602789999999998559--227899868899998854999999998776069-37899999888999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 93099428999999998679886843099999999934992389999999986999988877999999999539957999
Q 003725 240 CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (800)
...|++++|...|+.+...+. ++......++..+........+.+.+..+...+..++.....................
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHH
T ss_conf 987668889999999995598-7511378999999999999999999998999987665126772467886344786158
Q ss_pred HHHHHHHHCCC---------CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999985999---------9999989999999991---4997899999999977-----89874277999999999649
Q 003725 320 SVLLRMKQLRV---------TPDKYVYSALISGYCK---CGNIIKALSLHGEMTS-----IGIKTNYVVSVILKCLCQMG 382 (800)
Q Consensus 320 ~~~~~~~~~~~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g 382 (800)
.+...+..... +.+...+......+.. .|++++|...++++.. ....|+..-
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------- 231 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK----------- 231 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH-----------
T ss_pred HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-----------
T ss_conf 999998625878888872599588899998999987623322999999999999886654223810011-----------
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 97899999999987899878877999999998069978999999999839999798889999999992599789999999
Q 003725 383 KTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFK 462 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (800)
..+.+...+..+...+...|++++|...++.+...... ...+..+...+...|++++|...++
T Consensus 232 ---------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 232 ---------------LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred ---------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ---------------48278999999999999878999999999999863864--8999999999998888999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99875999899999999999995299999999999998789999999999999999953998899999999974369457
Q 003725 463 KMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN 542 (800)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 542 (800)
++..... .+...+..+...+...|++++|...++.+.+.. +.+...
T Consensus 295 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-------------------------------- 340 (514)
T 2gw1_A 295 KALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFP-------------------------------- 340 (514)
T ss_dssp HHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHH--------------------------------
T ss_pred HHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-HHHHHH--------------------------------
T ss_conf 9861386-778999999999998077999999999998738-502899--------------------------------
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHH
Q ss_conf 79999999804998999999999987698888200898999999519977999999999868999-89----87899999
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAK-PS----KTTYDKVI 617 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~ 617 (800)
+..+...+...|++++|...+.++....+. +...+..+...+...|+.++|...++.+.+.... ++ ...+..++
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999868999999999999987546-7789999999998788999999999999976123321789999999999
Q ss_pred HHHHH---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99994---2996899999999998999989999999999998109999999999999985999789889
Q 003725 618 GALCL---AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLY 683 (800)
Q Consensus 618 ~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 683 (800)
..+.. .|++++|...++.+.+..+. +...+..++..|.+.|++++|...|+++.+. .|+....
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHH
T ss_conf 9986633258889999999999875855-5899999999999825799999999999876--6146889
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=188.19 Aligned_cols=196 Identities=10% Similarity=-0.065 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q ss_conf 99999999999529999999999999878999999999999999995399889999999997436--9457799999998
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYC 551 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~ 551 (800)
..+..+...+...|+++.|...++.+.+... +...+..+...+...|++++|...+++.+... ....+..+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999999999987899999999999986386--48999999999998888999999999986138677899999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 04998999999999987698888200898999999519977999999999868999898789999999994299689999
Q 003725 552 EANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQ 631 (800)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 631 (800)
..|++++|...++++....+. +...+..+...+...|+.++|+..++.+.+.. +.+...+..++..+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 807799999999999873850-28999999999998689999999999999875-4677899999999987889999999
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf 99999989999-89----9999999999981---0999999999999998
Q 003725 632 VFDFLTRHGLI-PD----LISYTMLIHGFCK---LNCLREACNIFKDMKL 673 (800)
Q Consensus 632 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 673 (800)
.++.+.+..+. ++ ...+..++..+.. .|++++|...++++..
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999976123321789999999999998663325888999999999987
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=180.57 Aligned_cols=130 Identities=15% Similarity=0.029 Sum_probs=67.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHH
Q ss_conf 799999998049989999999999876988882008989999995199779999999998689-----998987899999
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD-----AKPSKTTYDKVI 617 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~ 617 (800)
+..+...+...|++++|...++++....+. +...+..+...+...|+.++|...++++++.. .......+....
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999847799999999999873999-8599999999998837889999999999870976244688899999889
Q ss_pred HHHHHC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999942----------996899999999998999989999999999998109999999999999985
Q 003725 618 GALCLA----------GKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 618 ~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
..+... |++++|...++.+.+..+. +...+..++.+|.+.|++++|...|++..+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999764010022475799999999999974999-7899999999999851499999999999986
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=176.56 Aligned_cols=436 Identities=13% Similarity=0.015 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999998039967999999970079996599989999999997499469999999998589987878699999998
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKAL 239 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 239 (800)
..+..+...+...|++++|+..|+++...+ +.+..++..+..++...|+++.|...++.+.... +.+...+..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 999999999998642999999999998638-9984899999999998689999999999998609-86289999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 9309942899999999867988684309999999993499238999999998699--99888779999999995399579
Q 003725 240 CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG--IPLNAFAYTAVIREFCQNSRLVE 317 (800)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 317 (800)
...|++++|...|+. .... |+ .....+..+...+....+...++.+.... ..+........+..+....+...
T Consensus 104 ~~~g~~~~A~~~~~~-~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSV-LSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHHH-HHCC--CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 983899999999999-8648--78--785889999987789889999999997474545434506757999997447499
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------HCCCHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHC
Q ss_conf 999999998599999999-8999999999--------149978999999999778987427-------799999999964
Q 003725 318 AESVLLRMKQLRVTPDKY-VYSALISGYC--------KCGNIIKALSLHGEMTSIGIKTNY-------VVSVILKCLCQM 381 (800)
Q Consensus 318 A~~~~~~~~~~~~~p~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~ 381 (800)
+...+...... .+... ....+...+. ..|++++|..+++.+....+.... ++..+...+...
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99987632564--6178999999987887640206888879999999999999878774044599999999999998754
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99789999999998789987887799999999806997899999999983999979888999999999259978999999
Q 003725 382 GKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLF 461 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (800)
|++++|...+++.....+. ...+..+...+...|++++|...++.+...... +...+..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 5578999999999866987--469999999999803799999999997545999-8799999999998668999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99987599989999999999999529999999999999878999999999999999995399889999999997436945
Q 003725 462 KKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLE 541 (800)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (800)
+++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 334 ~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------- 402 (537)
T 3fp2_A 334 QKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD--------- 402 (537)
T ss_dssp HHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH---------
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHH---------
T ss_conf 999985999-77999999999998477999999999998739-9985999999999988378899999999---------
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-----CCHHCHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCC
Q ss_conf 7799999998049989999999999876988-----8820089899999951----------997799999999986899
Q 003725 542 NYSAMVDGYCEANHLEEAFQFFMTLSQRGFL-----MRSESCCKLLTNLLIE----------GYNNKAFKLLDTMLKLDA 606 (800)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 606 (800)
++....+. .....+......+... |++++|+..++++++..
T Consensus 403 -----------------------~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 403 -----------------------IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp -----------------------HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred -----------------------HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf -----------------------99870976244688899999889999997640100224757999999999999749-
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 989878999999999429968999999999989999
Q 003725 607 KPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLI 642 (800)
Q Consensus 607 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 642 (800)
+.+...+..+..++...|++++|...++.+.+..+.
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 997899999999999851499999999999986899
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=172.69 Aligned_cols=380 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99679999999700799965999899999999974994699999999985899878786999999989309942899999
Q 003725 173 RMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVL 252 (800)
Q Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 252 (800)
.....+...+....... +.+...+..++..+.+.|+++.|...|+.+.... +.+...+..+...+...|++++|...+
T Consensus 6 ~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 6 HHSSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 45544465642356653-7899999999999998799999999999999849-716899999999999879979999999
Q ss_pred HHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHHCCCHHH
Q ss_conf 99986798868430999999999349923899999999869999888---779999999------------995399579
Q 003725 253 NEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA---FAYTAVIRE------------FCQNSRLVE 317 (800)
Q Consensus 253 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~------------~~~~g~~~~ 317 (800)
+.+.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+. ..+..++.. +...|++++
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9998449-8748999999999998699999999999997249-9970168899999999999999999999998689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999859999999989999999991499789999999997789874277999999999649978999999999878
Q 003725 318 AESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSM 397 (800)
Q Consensus 318 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 397 (800)
|...++.+.... +.+...+..++..|...|++++|...++.+....+....++..++.++...|++++|...++++...
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999868-8976999999999987799999999999999868898799999999999759999999999999875
Q ss_pred CCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 998788779999------------9999806997899999999983999979-----88899999999925997899999
Q 003725 398 GIFLDQVCYNVI------------MDALCKLGEVEEAVKLFNEMEGRQIVPD-----VANYTTVIDGYILRGKLVDAIGL 460 (800)
Q Consensus 398 ~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~ 460 (800)
.+. +...+..+ ...+...|++++|...++.+... .|+ ...+..+...+.+.|++++|...
T Consensus 241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 998-0899999999999999999999998717999999999999850--8733689999999999999987889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------------HHHHHCC-----C
Q ss_conf 9999875999899999999999995299999999999998789999999999999------------9999539-----9
Q 003725 461 FKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMII------------EGLCTSG-----R 523 (800)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~g-----~ 523 (800)
++++.+.... +...|..+..++...|++++|...++.+.+.. +.+...+..+. ..|...| .
T Consensus 318 ~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
T ss_conf 9999884845-48999999999987037999999999998859-352999999999999864335056999818986689
Q ss_pred HHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHCCCCHHHHHHH
Q ss_conf 8899999999974369457-------------79999999804998999999
Q 003725 524 VKEARAFFDDDLKEKCLEN-------------YSAMVDGYCEANHLEEAFQF 562 (800)
Q Consensus 524 ~~~a~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~~ 562 (800)
.+++.+.+.+......+.. +..+..+|...++.++....
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 8999999999999759897999347899999999999999986899999763
Done!