BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003726
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1125 bits (2910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/797 (67%), Positives = 657/797 (82%), Gaps = 3/797 (0%)
Query: 2 RDRVQDTLSVHRNELVSLLSRYAGKGKGILQRHHLTEEMDDIVKEDEGMQKLSKSPFMKV 61
R+R+ +TL RNE+++LLSR KGKGILQ++ + E + + ++ +KL PF +
Sbjct: 15 RERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEAL--PEQTRKKLEGGPFFDL 72
Query: 62 LQSAQEAIILPPFVVLAVRPRPGVWEYVRVNVYELSVDRLNVAEYLKSKEELVEGQSGDN 121
L+S QEAI+LPP+V LAVRPRPGVWEY+RVN++ L V+ L AE+L KEELV+G N
Sbjct: 73 LKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGN 132
Query: 122 YVLELDLEPFNATFPRPTRSSSIGNGVQFLNRHLSSVMFRNKESLEPLLNFLRVHKHDGF 181
+ LELD EPFNA+ PRPT IGNGV FLNRHLS+ +F +KESL PLL FLR+H H G
Sbjct: 133 FTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKFLRLHSHQGK 192
Query: 182 VMMLNDRIQSISKLQSALQRAEEYLSKFLPDTPYSEFEFEIQGMGFERGWGDTAQRVSEM 241
+ML+++IQ+++ LQ L++AEEYL++ +T Y EFE + + +G ERGWGD A+RV +M
Sbjct: 193 NLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLDM 252
Query: 242 VHLLLDILQAPDPATLETFLGRIPMVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQV 301
+ LLLD+L+APDP TLETFLGR+PMVFNVVI+SPHGYF Q NVLG PDTGGQVVYILDQV
Sbjct: 253 IRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQV 312
Query: 302 RALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQRLERISGTEHTHILRVPFRTE 361
RALE EML RI+ QGL++ P+ILI+TRL+PDA GTTC +RLER+ +E+ ILRVPFRTE
Sbjct: 313 RALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTE 372
Query: 362 NGILRKWISRFDVWPYLETFAEDASNEIAAELQGVPDLIIGNYSDGNLVATLLSYKLGVT 421
GI+RKWISRF+VWPYLET+ EDA+ E++ EL G PDLIIGNYSDGNLVA+LL++KLGVT
Sbjct: 373 KGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVT 432
Query: 422 QCNIAHALEKTKYPDSDLYWRKFEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNN 481
QC IAHALEKTKYPDSD+YW+K ++KYHFS QFTAD+ AMN+ DFIITST+QEIAGSK
Sbjct: 433 QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKET 492
Query: 482 VGQYENHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIED 541
VGQYE+HTAFTLPGLYRVVHGIDVFDPKFNIVSPGADM IYFPY+++++RL H +IE+
Sbjct: 493 VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEE 552
Query: 542 LLYDPKQNDEHVGILNDRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGY 601
LLY +N EH+ +L D+ KP++F+MARLD VKNL+GLVE YGK+++LREL NLVVVGG
Sbjct: 553 LLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGD 612
Query: 602 MDVKNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQP 661
K S+D EE AE++KM+ LI++Y L+GQFRWIS+QM+RVRNGELYRYI DT+G FVQP
Sbjct: 613 RR-KESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQP 671
Query: 662 AFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKC 721
A YEAFGLTVVEAMTCGLPTFATC GGPAEII HG SGFHIDPYH DQ A+ + +FF KC
Sbjct: 672 ALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKC 731
Query: 722 YNDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGVYGFWKYVSKLDRRETRRYLEMFY 781
DPSHW++IS GGL+RI E+YTW+IYS+RLLTL GVYGFWK+VS LDR E RRYLEMFY
Sbjct: 732 KEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFY 791
Query: 782 ILKFRDLAKSVRLAVDE 798
LK+R LA++V LA D+
Sbjct: 792 ALKYRPLAQAVPLAQDD 808
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1081 bits (2796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/797 (65%), Positives = 645/797 (80%), Gaps = 3/797 (0%)
Query: 2 RDRVQDTLSVHRNELVSLLSRYAGKGKGILQRHHLTEEMDDIVKEDEGMQKLSKSPFMKV 61
R+R+ +TL RNE+++LLSR KGKGILQ++ + E + + ++ +KL PF +
Sbjct: 15 RERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEAL--PEQTRKKLEGGPFFDL 72
Query: 62 LQSAQEAIILPPFVVLAVRPRPGVWEYVRVNVYELSVDRLNVAEYLKSKEELVEGQSGDN 121
L+S QEAI+LPP+V LAVRPRPGVWEY+RVN++ L V+ L AE+L KEELV+G N
Sbjct: 73 LKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGN 132
Query: 122 YVLELDLEPFNATFPRPTRSSSIGNGVQFLNRHLSSVMFRNKESLEPLLNFLRVHKHDGF 181
+ LELD EPFNA+ PRPT IGNGV FLNRHLS+ +F +KESL PLL FLR+H H G
Sbjct: 133 FTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKFLRLHSHQGK 192
Query: 182 VMMLNDRIQSISKLQSALQRAEEYLSKFLPDTPYSEFEFEIQGMGFERGWGDTAQRVSEM 241
+ L+++IQ+++ LQ L++AEEYL++ +T Y EFE + + +G ERGWGD A+RV +
Sbjct: 193 NLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLDX 252
Query: 242 VHLLLDILQAPDPATLETFLGRIPMVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQV 301
+ LLLD+L+APDP TLETFLGR+P VFNVVI+SPHGYF Q NVLG PDTGGQVVYILDQV
Sbjct: 253 IRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQV 312
Query: 302 RALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQRLERISGTEHTHILRVPFRTE 361
RALE E L RI+ QGL++ P+ILI+TRL+PDA GTTC +RLER+ +E+ ILRVPFRTE
Sbjct: 313 RALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTE 372
Query: 362 NGILRKWISRFDVWPYLETFAEDASNEIAAELQGVPDLIIGNYSDGNLVATLLSYKLGVT 421
GI+RKWISRF+VWPYLET+ EDA+ E++ EL G PDLIIGNYSDGNLVA+LL++KLGVT
Sbjct: 373 KGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVT 432
Query: 422 QCNIAHALEKTKYPDSDLYWRKFEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNN 481
QC IAHALEKTKYPDSD+YW+K ++KYHFS QFTAD+ A N+ DFIITST+QEIAGSK
Sbjct: 433 QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTFQEIAGSKET 492
Query: 482 VGQYENHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIED 541
VGQYE+HTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD IYFPY+++++RL H +IE+
Sbjct: 493 VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKRRLTKFHSEIEE 552
Query: 542 LLYDPKQNDEHVGILNDRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGY 601
LLY +N EH+ +L D+ KP++F+ ARLD VKNL+GLVE YGK+++LREL NLVVVGG
Sbjct: 553 LLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGD 612
Query: 602 MDVKNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQP 661
K S+D EE AE +K + LI++Y L+GQFRWIS+Q +RVRNGELYRYI DT+G FVQP
Sbjct: 613 RR-KESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRYICDTKGAFVQP 671
Query: 662 AFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKC 721
A YEAFGLTVVEA TCGLPTFATC GGPAEII HG SGFHIDPYH DQ A+ + +FF KC
Sbjct: 672 ALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKC 731
Query: 722 YNDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGVYGFWKYVSKLDRRETRRYLEMFY 781
DPSHW++IS GGL+RI E+YTW+IYS+RLLTL GVYGFWK+VS LDR E RRYLE FY
Sbjct: 732 KEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEXFY 791
Query: 782 ILKFRDLAKSVRLAVDE 798
LK+R LA++V LA D+
Sbjct: 792 ALKYRPLAQAVPLAQDD 808
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 142/490 (28%), Positives = 226/490 (46%), Gaps = 64/490 (13%)
Query: 269 NVVIVSPHGYFGQANVLGL--PDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIV 326
+V ++P G F A+ PD GGQ+VY+ E+ L + G+ ++ I+
Sbjct: 9 HVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGV----QVDII 56
Query: 327 TRLIPDAKGTTCNQRLERISGTEHTHILRVPFRTENGILRKWISRFDVWPYLETFAEDAS 386
TR I D + ++ T I+R+PF + K++ + ++WPYL +
Sbjct: 57 TRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGD-----KFLPKEELWPYLHEYVNKII 111
Query: 387 NEIAAELQGVPDLIIGNYSDGNLVATLLSYKLGVTQCNIAHALEKTKYPDSDLY---WRK 443
N E P ++ +Y DG L LL G+ H+L K ++ +++
Sbjct: 112 N-FYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKE 170
Query: 444 FEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNNVGQYENHTAFTLPGLYRVVHGI 503
+E++ F + A+ M+ AD II ST QE GQY + LYR +
Sbjct: 171 MDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQYSHD-------LYRGAVNV 217
Query: 504 DVFDPKFNIVSPGADMCIY-FPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGILNDRSKP 562
+ D KF+++ PG + ++ Y DK K I + + DL E + + P
Sbjct: 218 ED-DDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLE-RDL------GSERMEL------P 263
Query: 563 LIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKN-----SRDREEMAEI- 616
I + +RLD KN GLVE Y ++ +L++ NLV+ ++N SR +E EI
Sbjct: 264 AIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLT--LRGIENPFEDYSRAGQEEKEIL 321
Query: 617 EKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMT 676
K+ LI + G+ + G Y Y+A VF +FYE FGL VEAM
Sbjct: 322 GKIIELIDNNDCRGKVSMFPLNSQQELAG-CYAYLASKGSVFALTSFYEPFGLAPVEAMA 380
Query: 677 CGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGL 736
GLP T +GGPAEI++ G G +DP P+ +A +++ FE W+ + G
Sbjct: 381 SGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFES----EETWSAYQEKGK 436
Query: 737 KRIYERYTWK 746
+R+ ERYTW+
Sbjct: 437 QRVEERYTWQ 446
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 560 SKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVG-GYMDVKNSRDREEMAEIEK 618
+ P+I +RL K L++ + R L++VG G + R ++++ K
Sbjct: 197 TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVK 256
Query: 619 MHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCG 678
G ++ ++ +N + +++ A TRG + E G+ +EA CG
Sbjct: 257 FLGRLEYQDM----------INTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACG 303
Query: 679 LPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKR 738
+P A GG E + +G ++ D+++EL+IE +DP + G
Sbjct: 304 VPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRAH 358
Query: 739 IYERYTWKIYSERLLTL 755
+ ++W+I ERL +
Sbjct: 359 VEAEWSWEIMGERLTNI 375
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 560 SKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVG-GYMDVKNSRDREEMAEIEK 618
+ P+I +RL K L++ + R L++VG G + R ++++ K
Sbjct: 197 TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVK 256
Query: 619 MHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCG 678
G ++ ++ +N + +++ A TRG + E G+ +EA CG
Sbjct: 257 FLGRLEYQDM----------INTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACG 303
Query: 679 LPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKR 738
+P A GG E + +G ++ D+++EL+IE +DP + G
Sbjct: 304 VPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRAH 358
Query: 739 IYERYTWKIYSERLLTL 755
+ ++W+I ERL +
Sbjct: 359 VEAEWSWEIMGERLTNI 375
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 665 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYND 724
E+FGL ++EAM CG+P T GG E+I+HG +G+ + VA+ I+ + ++
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLK---DE 351
Query: 725 PSHWNKISDGGLKRIYERY-TWKIYSE 750
H N + + + +YE++ + KI S+
Sbjct: 352 ELHRN-MGERARESVYEQFRSEKIVSQ 377
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 665 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYND 724
E+FGL ++EAM CG+P T GG E+I+HG +G+ + VA+ I+ + ++
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLK---DE 371
Query: 725 PSHWNKISDGGLKRIYERY-TWKIYSE 750
H N + + + +YE++ + KI S+
Sbjct: 372 ELHRN-MGERARESVYEQFRSEKIVSQ 397
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 11/144 (7%)
Query: 558 DRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEMAEIE 617
D KP+I ++R D K + ++E Y K + V L++VG V D E E
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVG----VMAHDDPEGWIYFE 283
Query: 618 K-MHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMT 676
K + + + Y++ I V ++ +D V +Q + E FGLTV EAM
Sbjct: 284 KTLRKIGEDYDVKVLTNLIGVHAREVNA---FQRASD---VILQMSIREGFGLTVTEAMW 337
Query: 677 CGLPTFATCHGGPAEIIEHGVSGF 700
G P GG I G +GF
Sbjct: 338 KGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 629 HGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG 688
HG + I+ ++R E R + + + P+++E FGL +EAM G A+ GG
Sbjct: 310 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 365
Query: 689 PAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERYTWKIY 748
+II + +G + P ++A +++ E +D S + + K+ ++W+
Sbjct: 366 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRE----NCKKRAMSFSWEKS 420
Query: 749 SER 751
+ER
Sbjct: 421 AER 423
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 629 HGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG 688
HG + I+ ++R E R + + + P+++E FGL +EAM G A+ GG
Sbjct: 309 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 364
Query: 689 PAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERYTWKIY 748
+II + +G + P ++A +++ E +D S + + K+ ++W+
Sbjct: 365 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRE----NCKKRAMSFSWEKS 419
Query: 749 SER 751
+ER
Sbjct: 420 AER 422
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 629 HGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG 688
HG + I+ ++R E R + + + P+++E FGL +EAM G A+ GG
Sbjct: 309 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 364
Query: 689 PAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERYTWKIY 748
+II + +G + P ++A +++ E +D S + + K+ ++W+
Sbjct: 365 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRE----NCKKRAMSFSWEKS 419
Query: 749 SER 751
+ER
Sbjct: 420 AER 422
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 629 HGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG 688
HG + I+ ++R E R + + + P+++E FGL +EAM G A+ GG
Sbjct: 94 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 149
Query: 689 PAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHW 728
+II + +G + P ++A +++ E +D S +
Sbjct: 150 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKF 188
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 558 DRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEMAEIE 617
D KP+I ++R D K + ++E Y K + V L++VG V D E E
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVG----VXAHDDPEGWIYFE 283
Query: 618 K-MHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMT 676
K + + + Y++ I V ++ +D V +Q + E FGLTV EA
Sbjct: 284 KTLRKIGEDYDVKVLTNLIGVHAREVN---AFQRASD---VILQXSIREGFGLTVTEAXW 337
Query: 677 CGLPTFATCHGGPAEIIEHGVSGF 700
G P GG I G +GF
Sbjct: 338 KGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 558 DRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEMAEIE 617
D KP+I ++R D K + ++E Y K + V L++VG V D E E
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVG----VMAHDDPEGWIYFE 283
Query: 618 K-MHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMT 676
K + + + Y++ I V ++ +D V +Q + FGLTV EAM
Sbjct: 284 KTLRKIGEDYDVKVLTNLIGVHAREVNA---FQRASD---VILQMSIRAGFGLTVTEAMW 337
Query: 677 CGLPTFATCHGGPAEIIEHGVSGF 700
G P GG I G +GF
Sbjct: 338 KGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 499 VVHGIDVFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGI-LN 557
++H D + ++VSPGAD+ +Y P +D+ +++ +GI L+
Sbjct: 179 LMHHYDADPDRISVVSPGADVELYSPGNDRAT----------------ERSRRELGIPLH 222
Query: 558 DRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDR-EEMAEI 616
+ + + G + L V R L +++ GG + D MAE
Sbjct: 223 TKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNL-RVIICGGPSGPNATPDTYRHMAEE 281
Query: 617 EKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMT 676
+ I+ + ++ +YR AD + P+F E+FGL +EA
Sbjct: 282 LGVEKRIRFLDPRPPSELVA----------VYR-AAD---IVAVPSFNESFGLVAMEAQA 327
Query: 677 CGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFE 719
G P A GG + G +G +D + P A+ + +
Sbjct: 328 SGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 370
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 499 VVHGIDVFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGI-LN 557
++H D + ++VSPGAD+ +Y P +D+ +++ +GI L+
Sbjct: 199 LMHHYDADPDRISVVSPGADVELYSPGNDRAT----------------ERSRRELGIPLH 242
Query: 558 DRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDR-EEMAEI 616
+ + + G + L V R L +++ GG + D MAE
Sbjct: 243 TKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNL-RVIICGGPSGPNATPDTYRHMAEE 301
Query: 617 EKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMT 676
+ I+ + ++ +YR AD + P+F E+FGL +EA
Sbjct: 302 LGVEKRIRFLDPRPPSELVA----------VYR-AAD---IVAVPSFNESFGLVAMEAQA 347
Query: 677 CGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFE 719
G P A GG + G +G +D + P A+ + +
Sbjct: 348 SGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 657 VFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHI-DPYHPDQVAELM 714
+ + PA+ EA G+ ++EA+T GLP T G A I G I +P+ +Q+ E++
Sbjct: 273 LLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 660 QPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHI-DPYHPDQVAELM 714
PA+ EA G+ ++EA+T GLP T G A I G I +P+ +Q+ E++
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 644 NGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHI 702
N L I V P+ +E GL ++ M G P GG + + G +GFH+
Sbjct: 391 NAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHM 449
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 26/132 (19%)
Query: 245 LLDILQAPDPATLETFLGRIPMVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRAL 304
+LD AP+P +++++ + + NV ++ P Y DT ++L
Sbjct: 179 ILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYI---------DTSKHTYLDFLSQKSL 229
Query: 305 ENEMLLRIQNQGLDVIPKILIVTRLIPDA-KGTTCNQRLERISGTEHTHILRVPFRTENG 363
NE IP+I+ ++ + + + R+E T++ + PFR +G
Sbjct: 230 INE------------IPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSG 277
Query: 364 ----ILRKWISR 371
+KW+ R
Sbjct: 278 GNVAFAKKWLFR 289
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 26/132 (19%)
Query: 245 LLDILQAPDPATLETFLGRIPMVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRAL 304
+LD AP+P +++++ + + NV ++ P Y DT ++L
Sbjct: 180 ILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYI---------DTSKHTYLDFLSQKSL 230
Query: 305 ENEMLLRIQNQGLDVIPKILIVTRLIPDA-KGTTCNQRLERISGTEHTHILRVPFRTENG 363
NE IP+I+ ++ + + + R+E T++ + PFR +G
Sbjct: 231 INE------------IPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSG 278
Query: 364 ----ILRKWISR 371
+KW+ R
Sbjct: 279 GNVAFAKKWLFR 290
>pdb|2JHQ|A Chain A, Crystal Structure Of Uracil Dna-Glycosylase From Vibrio
Cholerae
Length = 226
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 3 DRVQDTLSVHRNELVSLLSRYAGKGKGIL---QRHHL 36
DRV D L+ HRN L+ LL + KG + QRHH+
Sbjct: 146 DRVIDALNQHRNGLIFLLWGSHAQKKGQMIDRQRHHV 182
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 656 GVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPY---------- 705
GVF P++YE +G T E G+P+ T G +E + Y
Sbjct: 522 GVF--PSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFK 579
Query: 706 HPDQVAELMIEFFEK 720
PD+ E ++++ E+
Sbjct: 580 APDESVEQLVDYMEE 594
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 656 GVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPY---------- 705
GVF P++YE +G T E G+P+ T G +E + Y
Sbjct: 522 GVF--PSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFK 579
Query: 706 HPDQVAELMIEFFEK 720
PD+ E ++++ E+
Sbjct: 580 APDESVEQLVDYMEE 594
>pdb|3GAC|A Chain A, Structure Of Mif With Hpp
pdb|3GAC|B Chain B, Structure Of Mif With Hpp
pdb|3GAC|C Chain C, Structure Of Mif With Hpp
pdb|3GAC|D Chain D, Structure Of Mif With Hpp
pdb|3GAC|E Chain E, Structure Of Mif With Hpp
pdb|3GAC|F Chain F, Structure Of Mif With Hpp
pdb|3GAD|A Chain A, Structure Of Apomif
pdb|3GAD|B Chain B, Structure Of Apomif
pdb|3GAD|C Chain C, Structure Of Apomif
pdb|3GAD|D Chain D, Structure Of Apomif
pdb|3GAD|E Chain E, Structure Of Apomif
pdb|3GAD|F Chain F, Structure Of Apomif
Length = 117
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 554 GILNDRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEM 613
I N KP+ + M+ D KNL + S++ V L +GG NS +++
Sbjct: 26 AISNVLGKPVAYIMSNYDYQKNLR-----FSGSNEGYCFVRLTSIGGINRSNNSSLADKI 80
Query: 614 AEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELY 648
+I H +K ++ +FR SAQ N +G L+
Sbjct: 81 TKILSNHLGVKPRRVYIEFRDCSAQ-NFAFSGSLF 114
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 296 YILDQVRALENEMLLRIQNQGLDVIP 321
YI+ ++ A+ +ML++++ +GL+V+P
Sbjct: 77 YIVPEIEAIATDMLIQLEEEGLNVVP 102
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 296 YILDQVRALENEMLLRIQNQGLDVIP 321
YI+ ++ A+ +ML++++ +GL+V+P
Sbjct: 78 YIVPEIEAIATDMLIQLEEEGLNVVP 103
>pdb|2WKB|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|D Chain D, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|E Chain E, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|F Chain F, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
Length = 125
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 554 GILNDRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEM 613
I N KP+ + M+ D KNL + S++ V L +GG NS +++
Sbjct: 26 AISNILGKPVAYIMSNYDYQKNLR-----FSGSNEGYCFVRLTSIGGINRSNNSLLADKI 80
Query: 614 AEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELY 648
+I H +K ++ +FR SAQ N +G L+
Sbjct: 81 TKILSNHLSVKPRRVYIEFRDCSAQ-NFAFSGSLF 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,620,619
Number of Sequences: 62578
Number of extensions: 1078777
Number of successful extensions: 2242
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2203
Number of HSP's gapped (non-prelim): 36
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)