Query 003726
Match_columns 800
No_of_seqs 366 out of 3593
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:19:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003726.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1774-1778//hhsearch_pdb/003726hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 1.0 1 1 1535.0 64.3 795 1-798 14-808 (816)
2 2r60_A Glycosyl transferase, g 1.0 1 1 384.1 36.7 435 264-759 4-459 (499)
3 3vue_A GBSS-I, granule-bound s 1.0 1 1 378.5 29.4 439 266-760 8-512 (536)
4 3fro_A GLGA glycogen synthase; 1.0 1 1 360.0 36.3 399 267-758 2-429 (439)
5 3c48_A Predicted glycosyltrans 1.0 1 1 359.8 34.5 401 265-758 18-424 (438)
6 2qzs_A Glycogen synthase; glyc 1.0 1 1 340.2 33.8 430 268-758 1-475 (485)
7 1rzu_A Glycogen synthase 1; gl 1.0 1 1 339.9 31.9 432 268-758 1-474 (485)
8 3okp_A GDP-mannose-dependent a 1.0 1 1 329.0 35.2 368 266-758 3-378 (394)
9 2jjm_A Glycosyl transferase, g 1.0 1 1 326.2 36.3 359 288-759 24-385 (394)
10 2iw1_A Lipopolysaccharide core 1.0 1 1 322.5 19.7 367 268-759 1-371 (374)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=1535.00 Aligned_cols=795 Identities=67% Similarity=1.153 Sum_probs=768.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEEEECCEEEEEEC
Q ss_conf 92137867878099999999998606987211225899998773210011324789189987450024440980899984
Q 003726 1 MRDRVQDTLSVHRNELVSLLSRYAGKGKGILQRHHLTEEMDDIVKEDEGMQKLSKSPFMKVLQSAQEAIILPPFVVLAVR 80 (800)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~r 80 (800)
|+|++++++++||+++++||++|+++||++||+|||+++|+++|+ .+++++.+|+||++|++||||||.|||||||||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 91 (816)
T 3s28_A 14 QRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPE--QTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVR 91 (816)
T ss_dssp -------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTT--SCGGGCCCSTHHHHHHTEEEEEECSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHEEECCCEEEEEEC
T ss_conf 888899899975999999999998629972029999999999998--622033468199999852410446872799982
Q ss_pred CCCCEEEEEEEECCCCEEEECCHHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 77740899998418510222287887731000125867998614430555547788888899987513355464210005
Q 003726 81 PRPGVWEYVRVNVYELSVDRLNVAEYLKSKEELVEGQSGDNYVLELDLEPFNATFPRPTRSSSIGNGVQFLNRHLSSVMF 160 (800)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (800)
||||+|||+|||++||+||+|||+|||+|||+|||++.+++++||+||+|||++||++++|+||||||+|||||||||||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (816)
T 3s28_A 92 PRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLF 171 (816)
T ss_dssp EETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEEHHHCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 88742599998730071145369999886898538877888705776455435799889865445748888888776654
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99888236999986243699132214557998899999999999842099999943468874204876664732888999
Q 003726 161 RNKESLEPLLNFLRVHKHDGFVMMLNDRIQSISKLQSALQRAEEYLSKFLPDTPYSEFEFEIQGMGFERGWGDTAQRVSE 240 (800)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~ 240 (800)
+|+++++|||+||++|+|+|++|||||||+|+.+|+++|++|++||+++|+||||++|+++||+|||||||||||+||+|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (816)
T 3s28_A 172 HDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLD 251 (816)
T ss_dssp TCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBCSCSBHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 89155579999999723499064105876799999999999999985499999889999999972888876876899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99977984339994307566316895028999946767787667889999805799999999999999999997899501
Q 003726 241 MVHLLLDILQAPDPATLETFLGRIPMVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVI 320 (800)
Q Consensus 241 ~~~~l~~~~~~p~~~~l~~f~~~~p~~~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~ 320 (800)
||++|+|+|++|||++||+|++|+||+|+|+|||+|||++|.+++|.||||||++||+||||||+++|+++|+++||+|+
T Consensus 252 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~ 331 (816)
T 3s28_A 252 MIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIK 331 (816)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999998519996307777365885248999847766575445788888983650998998999999999997799620
Q ss_pred CCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 12159937779998886665410005887749999415777741101245568701499999999999999809996099
Q 003726 321 PKILIVTRLIPDAKGTTCNQRLERISGTEHTHILRVPFRTENGILRKWISRFDVWPYLETFAEDASNEIAAELQGVPDLI 400 (800)
Q Consensus 321 ~~i~ViTr~~p~~~g~~~~~~~e~~~g~~~v~I~Rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~ll~~~~~kPDII 400 (800)
|+|+|+|+.+++..++.|+++.+.+.+++|++|+|+|+++.++++++|++++.+|+|+..|...+...+++..+++||||
T Consensus 332 ~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVI 411 (816)
T 3s28_A 332 PRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLI 411 (816)
T ss_dssp CEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEE
T ss_pred EEEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 01689968987877776577511554869759999668776654334565778899999999999999999658997399
Q ss_pred EECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCC
Q ss_conf 98799906999999843897099996398655699971368765432101003248898712389999459788831046
Q 003726 401 IGNYSDGNLVATLLSYKLGVTQCNIAHALEKTKYPDSDLYWRKFEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKN 480 (800)
Q Consensus 401 h~~~~~~~lva~llar~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~ei~~~~~ 480 (800)
|+|+|++++++.++++++|+|+|+|.|++...++..++.+|......|++.+++.+|..+++.||.|||+|+++++.+.+
T Consensus 412 HsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~ 491 (816)
T 3s28_A 412 IGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKE 491 (816)
T ss_dssp EEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSS
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHH
T ss_conf 96885389999999997599889998166300122233015567788889888889999998499999888999999998
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76643444344566621444068889996599259977888888994799998731010000169755301016557999
Q 003726 481 NVGQYENHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGILNDRS 560 (800)
Q Consensus 481 ~~gqy~~~~~f~~p~l~~vv~Gi~v~~~ki~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gll~~~~ 560 (800)
.+++|.++.+|++|++|++++|++++++|+.|||||+|.+.|.|......++...++.++..++++.+.++.+|++.+++
T Consensus 492 ~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~ 571 (816)
T 3s28_A 492 TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKK 571 (816)
T ss_dssp SCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTT
T ss_pred HHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 88776442013541122101224467788799889747887286310355432002320001246056777744457899
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 96999982278889978999999982324998299999455798885325779999999999997199993999016567
Q 003726 561 KPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQMN 640 (800)
Q Consensus 561 k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~~~e~~~~~~~l~~li~~~gL~~~V~flG~~~~ 640 (800)
+++|+++||+++.||++.+++|++++.+.+++++|+|+|++++ ..+.+.++.++.+.+.++++++++.++|.|+|++.+
T Consensus 572 ~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~-~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~ 650 (816)
T 3s28_A 572 KPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRR-KESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMD 650 (816)
T ss_dssp SCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTT-SCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCC
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
T ss_conf 8399997447221799999999999785579969999968875-333433569999999999997499872898167556
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 56827899999812839996699887838999999839968992755632111028529998999999999999999998
Q 003726 641 RVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEK 720 (800)
Q Consensus 641 ~~~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~lv~p~d~e~lA~aI~~~l~~ 720 (800)
.++.+++++++++++|+||+||.+|+||++++|||+||+|||+|+.||+.|+|.++.+|++++|.|++++|++|.++++.
T Consensus 651 ~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~ 730 (816)
T 3s28_A 651 RVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTK 730 (816)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 68999999999956909998887557649999999809999996898769997069818996899999999999999987
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 119999999999999999999489999999999999982024550077689864579988763201210101222235
Q 003726 721 CYNDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGVYGFWKYVSKLDRRETRRYLEMFYILKFRDLAKSVRLAVDE 798 (800)
Q Consensus 721 l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (800)
+..|++.+++|++++++++.++|||+.++++++++|+.|+||+++++++|++++||+||||+|+|||||+++|+++|+
T Consensus 731 Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~~~~~~~~~~~~~ 808 (816)
T 3s28_A 731 CKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAVPLAQDD 808 (816)
T ss_dssp HHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHHHHHHHSCCCCC-
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 526999999999999999998689999999999999997675421354538888899999998605677508876311
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=384.08 Aligned_cols=435 Identities=28% Similarity=0.478 Sum_probs=314.3
Q ss_pred CCCEEEEEEECCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 89502899994676778766--7889999805799999999999999999997899501121599377799988866654
Q 003726 264 IPMVFNVVIVSPHGYFGQAN--VLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQR 341 (800)
Q Consensus 264 ~p~~~rIliis~hg~~~~~~--~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~~~~~ 341 (800)
|.+.|||++++++++|...+ +.+.+..||.+.++. +|++.|.++||+|+ |+|........+.+...
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~ 71 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGE 71 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCS
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCHHHH
T ss_conf 5445249999657774434423478888799433499--------99999985598489----99578872336511356
Q ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCE
Q ss_conf 10005887749999415777741101245568701499999999999999809996099987999069999998438970
Q 003726 342 LERISGTEHTHILRVPFRTENGILRKWISRFDVWPYLETFAEDASNEIAAELQGVPDLIIGNYSDGNLVATLLSYKLGVT 421 (800)
Q Consensus 342 ~e~~~g~~~v~I~Rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~ll~~~~~kPDIIh~~~~~~~lva~llar~~gip 421 (800)
.+......++.++++|..... +..+..+|.++..+...+.+ +++....+||+||+|.+..++++.++++..++|
T Consensus 72 ~~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p 145 (499)
T 2r60_A 72 IDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIIN-FYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLP 145 (499)
T ss_dssp EEECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHH-HHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred HHHCCCCCCEEEEEECCCCCC-----CCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 775067898179982577767-----76889999989999999999-998538998889975786207999988735996
Q ss_pred EEEEECCCCCCCCC---CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99996398655699---971368765432101003248898712389999459788831046766434443445666214
Q 003726 422 QCNIAHALEKTKYP---DSDLYWRKFEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNNVGQYENHTAFTLPGLYR 498 (800)
Q Consensus 422 ~v~t~H~l~~~~~~---~s~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~ei~~~~~~~gqy~~~~~f~~p~l~~ 498 (800)
++.+.|+....... ........+...+.+......+...++.+|.||++|....+...+..
T Consensus 146 ~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~---------------- 209 (499)
T 2r60_A 146 FTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD---------------- 209 (499)
T ss_dssp EEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG----------------
T ss_pred EEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH----------------
T ss_conf 8998068400111344147877612455678889999999998468999988889999998641----------------
Q ss_pred EECC-C-CC-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CCCCCCCCEEEEEECC
Q ss_conf 4406-8-88-9996599259977888888994799998731010000169755301016-----5579999699998227
Q 003726 499 VVHG-I-DV-FDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVG-----ILNDRSKPLIFSMARL 570 (800)
Q Consensus 499 vv~G-i-~v-~~~ki~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~G-----ll~~~~k~iIl~vGRL 570 (800)
..| + +. ...++.|||||+|.+.|.+......+. ..++.+| + ++++++|+++||+
T Consensus 210 -~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~---------------~~r~~~~~~~~~~--~~~~~~i~~vGrl 271 (499)
T 2r60_A 210 -LYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKA---------------KITKYLERDLGSE--RMELPAIIASSRL 271 (499)
T ss_dssp -GGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHH---------------HHHHHHHHHSCGG--GTTSCEEEECSCC
T ss_pred -CCCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHHH---------------HHHHHHCCCCCCC--CCCCCEEEEEECC
T ss_conf -246422346788769987995866568641035678---------------9998836433456--8887689996068
Q ss_pred CCCCCHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHH
Q ss_conf 888997899999998232499-8299999455798885---325779999999999997199993999016567568278
Q 003726 571 DGVKNLTGLVECYGKSSKLRE-LVNLVVVGGYMDVKNS---RDREEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGE 646 (800)
Q Consensus 571 ~~~Kgi~~LieA~~~l~~~~~-~v~LvIVG~g~~~~~~---~~~e~~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~e 646 (800)
.+.||++.+++|+.++.+..+ .+.|+|+|+...+... ...++.++.+.+.++++++++.++|.|+| .++.++
T Consensus 272 ~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~ 347 (499)
T 2r60_A 272 DQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQE 347 (499)
T ss_dssp CGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC----CCCHHH
T ss_conf 5015889999999999873888659999878887532211113201479999999998649986099878----899899
Q ss_pred HHHHHHCCC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 999998128----3999669988783899999983996899275563211102852999899999999999999999811
Q 003726 647 LYRYIADTR----GVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCY 722 (800)
Q Consensus 647 l~~~la~aa----dvfV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~lv~p~d~e~lA~aI~~~l~~l~ 722 (800)
+..+++. + |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|+++++.|+++++++|.+++
T Consensus 348 ~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll---- 422 (499)
T 2r60_A 348 LAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF---- 422 (499)
T ss_dssp HHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH----
T ss_pred HHHHHHH-CCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHH----
T ss_conf 9999995-57679889978645897968999997699889816887788734786079958999999999999998----
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999489999999999999982
Q 003726 723 NDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGVY 759 (800)
Q Consensus 723 ~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~ 759 (800)
.|++.+++|++++++++.++|||+.++++++++|+..
T Consensus 423 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~ 459 (499)
T 2r60_A 423 ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEI 459 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 6999999999999999987579999999999999998
No 3
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=378.53 Aligned_cols=439 Identities=16% Similarity=0.180 Sum_probs=286.2
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 50289999467677876678899998057999999999999999999978995011215993777999888666541000
Q 003726 266 MVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQRLERI 345 (800)
Q Consensus 266 ~~~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~~~~~~e~~ 345 (800)
.-|||++||...+|. ..|||...++. .|.++|+++||+|. |+++.++......-......+
T Consensus 8 ~~MkIl~vs~E~~P~-------~K~GGLadvv~--------~L~~aL~~~G~~V~----Vi~P~Y~~~~~~~~~~~~~~~ 68 (536)
T 3vue_A 8 HHMNVVFVGAEMAPW-------SKTGGLGDVLG--------GLPPAMAANGHRVM----VISPRYDQYKDAWDTSVVAEI 68 (536)
T ss_dssp CCCEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCSCCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEECCCH-------HCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCHHHHHHCCCCEEEEE
T ss_conf 973899998724312-------12676999999--------99999997699699----990485022242265168999
Q ss_pred --CC-CCCEEEEEECCCCCCCC-C--CCCCCC------CCCH--------H-HHHHHH--HHHHHHHHHHH---------
Q ss_conf --58-87749999415777741-1--012455------6870--------1-499999--99999999980---------
Q 003726 346 --SG-TEHTHILRVPFRTENGI-L--RKWISR------FDVW--------P-YLETFA--EDASNEIAAEL--------- 393 (800)
Q Consensus 346 --~g-~~~v~I~Rvp~~~~~~~-~--~~~isr------~~i~--------~-yl~~f~--~~~~~~ll~~~--------- 393 (800)
.+ ...+.+.+.+.....-+ + ..+..| ..+| . ..++|+ ..+..++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~ 148 (536)
T 3vue_A 69 KVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFK 148 (536)
T ss_dssp EETTEEEEEEEEECEETTEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCC
T ss_pred EECCCEEEEEEEEEEECCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 83683378999999978955999647554123346677866688756766417999999999999999973026530110
Q ss_pred --CCCCEEEEECCCCCHHHHHHHHHCC-------CCEEEEEECCCCCCCC-CCCHH--------HHHHH--H---HHHCC
Q ss_conf --9996099987999069999998438-------9709999639865569-99713--------68765--4---32101
Q 003726 394 --QGVPDLIIGNYSDGNLVATLLSYKL-------GVTQCNIAHALEKTKY-PDSDL--------YWRKF--E---EKYHF 450 (800)
Q Consensus 394 --~~kPDIIh~~~~~~~lva~llar~~-------gip~v~t~H~l~~~~~-~~s~~--------~~~~~--~---~~y~~ 450 (800)
.+.+||+|+|+|.+++++.+++... ++|+|+|+|++..... +.... .+... . .....
T Consensus 149 ~~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (536)
T 3vue_A 149 GTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVE 228 (536)
T ss_dssp SCCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCC
T ss_conf 14799879997760489999999986402332025634542157422455553336441896564010333311464100
Q ss_pred CHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf 00324889871238999945978883104676643444344566621444068889996599259977888888994799
Q 003726 451 SSQFTADLTAMNNADFIITSTYQEIAGSKNNVGQYENHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFPYSDKEK 530 (800)
Q Consensus 451 ~~~~~~e~~al~~AD~IIt~S~~ei~~~~~~~gqy~~~~~f~~p~l~~vv~Gi~v~~~ki~VIpnGvD~~~f~p~~~~~~ 530 (800)
...+...+.++..||.|+|+|+..++......+ +++. +. .. ....++.+|+||+|.+.|.|.++...
T Consensus 229 ~~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~-------~g~~-l~---~~--~~~~~i~~I~NGiD~~~~~p~~d~~~ 295 (536)
T 3vue_A 229 GRKINWMKAGILEADRVLTVSPYYAEELISGIA-------RGCE-LD---NI--MRLTGITGIVNGMDVSEWDPSKDKYI 295 (536)
T ss_dssp EEEEEHHHHHHHHCSEEEESCHHHHHHHHTTCC-------CCSS-SC---CC--SCCCSCEECCCCCCTTTSCTTTCSSS
T ss_pred CCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCC-------CCCC-CC---CC--CCCCCEEEEECCCCHHHCCCCCCCCC
T ss_conf 330439999998536778768788534312634-------4522-00---12--54578189979966421488776210
Q ss_pred HHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 9987-310100001697553010165579999699998227888997899999998232499829999945579888532
Q 003726 531 RLIA-LHGQIEDLLYDPKQNDEHVGILNDRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRD 609 (800)
Q Consensus 531 rl~~-~~~~~~~~l~~~~~~~~~~Gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~~ 609 (800)
.... ....++....++...++.+|+..+++.|+|+++||+.++||++.|++|+.++.+ .+.+|+++|.|..
T Consensus 296 ~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~------ 367 (536)
T 3vue_A 296 TAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK------ 367 (536)
T ss_dssp SCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HCCEEEEEECCCC------
T ss_conf 01444345556567779999986199879997589999653023784789999997685--4985999954672------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCC
Q ss_conf 57799999999999971999939990165675682789999981283999669988783899999983996899275563
Q 003726 610 REEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGP 689 (800)
Q Consensus 610 ~e~~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~ 689 (800)
.....+......++ ++|.+.+ ..+.+++..+++. +|+||+||++|+||++++|||+||+|||+|+.||+
T Consensus 368 ----~~~~~~~~~~~~~~--~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~ 436 (536)
T 3vue_A 368 ----KFEKLLKSMEEKYP--GKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGL 436 (536)
T ss_dssp ----HHHHHHHHHHHHST--TTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHH
T ss_pred ----HHHHHHHHHHHHCC--CCEEEEE----ECCHHHHHHHHHH-HHEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf ----68999999876168--8549997----1468889999986-23425346568988899999986998999079982
Q ss_pred CCCCCCCCEEE----------EECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 21110285299----------98999999999999999998119999999999999999999489999999999999982
Q 003726 690 AEIIEHGVSGF----------HIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGVY 759 (800)
Q Consensus 690 ~EiI~dg~~G~----------lv~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~ 759 (800)
+|+|.||.+|| +++|.|+++++++|.+++.. ..++ .|++|.+++++ ++|||+..|++|+++|+.-
T Consensus 437 ~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~-~~~~-~~~~~~~~am~---~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 437 VDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKV-VGTP-AYEEMVRNCMN---QDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp HHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHH-TTSH-HHHHHHHHHHH---SCCSSHHHHHHHHHHHHTT
T ss_pred HHEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH-CCCH-HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHH
T ss_conf 22022798763246677751587999999999999999985-2959-99999999877---3599999999999999986
Q ss_pred H
Q ss_conf 0
Q 003726 760 G 760 (800)
Q Consensus 760 ~ 760 (800)
+
T Consensus 512 ~ 512 (536)
T 3vue_A 512 G 512 (536)
T ss_dssp C
T ss_pred H
T ss_conf 0
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=360.02 Aligned_cols=399 Identities=17% Similarity=0.230 Sum_probs=298.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC---------
Q ss_conf 02899994676778766788999980579999999999999999999789950112159937779998886---------
Q 003726 267 VFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTT--------- 337 (800)
Q Consensus 267 ~~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~--------- 337 (800)
.|||++++++.+| +..||.++++. +|++.|+++||+|+ |+|...+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred CEEEEEEECCCCC--------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCHHHHHCCCCCCCC
T ss_conf 5289999502177--------66688999999--------99999997798599----9836778823655246301476
Q ss_pred -CCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHH-HHHH-------HHHHHHHHHHHHH---CCCCEEEEECCC
Q ss_conf -665410005887749999415777741101245568701-4999-------9999999999980---999609998799
Q 003726 338 -CNQRLERISGTEHTHILRVPFRTENGILRKWISRFDVWP-YLET-------FAEDASNEIAAEL---QGVPDLIIGNYS 405 (800)
Q Consensus 338 -~~~~~e~~~g~~~v~I~Rvp~~~~~~~~~~~isr~~i~~-yl~~-------f~~~~~~~ll~~~---~~kPDIIh~~~~ 405 (800)
....... ....++.+.+++. . +..+..+++ +... |.. ....+++.. ..+||+||+|++
T Consensus 62 ~~~~~~~~-~~~~gv~v~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dii~~~~~ 131 (439)
T 3fro_A 62 EVQVKVSY-EERGNLRIYRIGG-G-------LLDSEDVYGPGWDGLIRKAVTFGR-ASVLLLNDLLREEPLPDVVHFHDW 131 (439)
T ss_dssp EEEEEEEE-EEETTEEEEEEES-G-------GGGCSSTTCSHHHHHHHHHHHHHH-HHHHHHHHHTTTSCCCSEEEEESG
T ss_pred CCCEEEEE-CCCCCCEEEEECC-H-------HCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 53102431-2578840899353-2-------205212466776300232578999-999999997444799819994640
Q ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCC
Q ss_conf 90699999984389709999639865569997136876543210100324889871238999945978883104676643
Q 003726 406 DGNLVATLLSYKLGVTQCNIAHALEKTKYPDSDLYWRKFEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNNVGQY 485 (800)
Q Consensus 406 ~~~lva~llar~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~ei~~~~~~~gqy 485 (800)
..++++.++++..++|++.+.|+.....++........+. ..........+...++.+|.|+++|....+. ..+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~~ 207 (439)
T 3fro_A 132 HTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLS-ELAPYPDIDPEHTGGYIADIVTTVSRGYLID---EWGFF 207 (439)
T ss_dssp GGHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCG-GGCCSSEECHHHHHHHHCSEEEESCHHHHHH---THHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCC-CCCCCCEEEHHHHHHHHCCEEEECCHHHHHH---HHHHH
T ss_conf 3434589886526997899965344456856774745510-0356663207666554345887268989999---86056
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCC----HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44434456662144406888999659925997788888899----47999987310100001697553010165579999
Q 003726 486 ENHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFPYS----DKEKRLIALHGQIEDLLYDPKQNDEHVGILNDRSK 561 (800)
Q Consensus 486 ~~~~~f~~p~l~~vv~Gi~v~~~ki~VIpnGvD~~~f~p~~----~~~~rl~~~~~~~~~~l~~~~~~~~~~Gll~~~~k 561 (800)
+....++.+||||+|.+.|.|.. ....+ ...++.+|+ +++
T Consensus 208 ------------------~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~- 251 (439)
T 3fro_A 208 ------------------RNFEGKITYVFNGIDCSFWNESYLTGSRDERK---------------KSLLSKFGM--DEG- 251 (439)
T ss_dssp ------------------GGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH---------------HHHHHHHTC--CSC-
T ss_pred ------------------HHCCCCEEECCCCCCCHHCCCCCCCCHHHHHH---------------HHHHHHCCC--CCC-
T ss_conf ------------------50477345347888804308432211045669---------------999997399--998-
Q ss_pred CEEEEEECCC-CCCCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 6999982278-8899789999999823249--982999994557988853257799999999999971999939990165
Q 003726 562 PLIFSMARLD-GVKNLTGLVECYGKSSKLR--ELVNLVVVGGYMDVKNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQ 638 (800)
Q Consensus 562 ~iIl~vGRL~-~~Kgi~~LieA~~~l~~~~--~~v~LvIVG~g~~~~~~~~~e~~~~~~~l~~li~~~gL~~~V~flG~~ 638 (800)
++|+++||+. +.||++.+++|+..+.+.. ++++|+|+|+|+. .+.+.+.+++++++ +.+.|.|
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~----------~~~~~l~~~~~~~~--~~~~~~g-- 317 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG--NVKVITE-- 317 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH----------HHHHHHHHHHHHCT--TEEEECS--
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH----------HHHHHHHHHHHHCC--CEEEECC--
T ss_conf 479997333534366999999999998546678718999807972----------67789999875069--8999728--
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 67568278999998128399966998878389999998399689927556321110285299989999999999999999
Q 003726 639 MNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFF 718 (800)
Q Consensus 639 ~~~~~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~lv~p~d~e~lA~aI~~~l 718 (800)
.++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++
T Consensus 318 --~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll 393 (439)
T 3fro_A 318 --MLSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL 393 (439)
T ss_dssp --CCCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHH
T ss_conf --7998899999997-799995898788618999999779976973788743168758-448968899899999999998
Q ss_pred HHHCC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 98119-99999999999999999948999999999999998
Q 003726 719 EKCYN-DPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGV 758 (800)
Q Consensus 719 ~~l~~-dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~ 758 (800)
. |++.++++++++++.+ ++|||+.++++++++|+.
T Consensus 394 ----~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 429 (439)
T 3fro_A 394 ----ELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTG 429 (439)
T ss_dssp ----HHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred ----HCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHH
T ss_conf ----319999999999999987-647299999999999999
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=359.75 Aligned_cols=401 Identities=21% Similarity=0.321 Sum_probs=299.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 95028999946767787667889999805799999999999999999997899501121599377799988866654100
Q 003726 265 PMVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQRLER 344 (800)
Q Consensus 265 p~~~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~~~~~~e~ 344 (800)
..+|||++++.+++|.. ..|.+..||.+.++. +|++.|.++||+|+ |+|....... .....
T Consensus 18 ~~mmkIl~i~~~~~p~~--~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~ 78 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQ--QPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVR 78 (438)
T ss_dssp -CCCEEEEECTTSCTTC--C-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEE
T ss_pred CCHHEEEEEEEECCCCC--CCCCCCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-----CCCCC
T ss_conf 00203345775325634--678788787999999--------99999996699799----9954788777-----54002
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 05887749999415777741101245568701499999999999999809996099987999069999998438970999
Q 003726 345 ISGTEHTHILRVPFRTENGILRKWISRFDVWPYLETFAEDASNEIAAELQGVPDLIIGNYSDGNLVATLLSYKLGVTQCN 424 (800)
Q Consensus 345 ~~g~~~v~I~Rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~ll~~~~~kPDIIh~~~~~~~lva~llar~~gip~v~ 424 (800)
. ..++.+.+++...... .++..++.++..|.....+..++.. .+||+||+|++..++++.++++..++|++.
T Consensus 79 ~--~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~p~v~ 150 (438)
T 3c48_A 79 V--AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRREK-VTYDLIHSHYWLSGQVGWLLRDLWRIPLIH 150 (438)
T ss_dssp E--ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHHHHHHHTCCEEE
T ss_pred C--CCCEEEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 5--6874899924787543-----2366778999999999999998416-899989947755789999999974999899
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 96398655699971368765432101003248898712389999459788831046766434443445666214440688
Q 003726 425 IAHALEKTKYPDSDLYWRKFEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNNVGQYENHTAFTLPGLYRVVHGID 504 (800)
Q Consensus 425 t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~ei~~~~~~~gqy~~~~~f~~p~l~~vv~Gi~ 504 (800)
+.|+............ ..... ......+...++.+|.|+++|....+...+. .|++
T Consensus 151 ~~h~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~g~~ 206 (438)
T 3c48_A 151 TAHTLAAVKNSYRDDS-DTPES----EARRICEQQLVDNADVLAVNTQEEMQDLMHH-------------------YDAD 206 (438)
T ss_dssp ECSSCHHHHSCC-----CCHHH----HHHHHHHHHHHHHCSEEEESSHHHHHHHHHH-------------------HCCC
T ss_pred EECCCCCCCCCCCCCC-CCCCH----HHHHHHHHHHHHCCCEEEECCHHHHHHHHHH-------------------HCCC
T ss_conf 9427740111110026-77315----7899999999840899998479999999998-------------------5898
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89996599259977888888994799998731010000169755301016557999969999822788899789999999
Q 003726 505 VFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGILNDRSKPLIFSMARLDGVKNLTGLVECYG 584 (800)
Q Consensus 505 v~~~ki~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~ 584 (800)
..++.+||||+|...|.+...... ...++.+|+ ++++++|+++||+.+.||++.+++|+.
T Consensus 207 --~~k~~vi~ngvd~~~~~~~~~~~~----------------~~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 266 (438)
T 3c48_A 207 --PDRISVVSPGADVELYSPGNDRAT----------------ERSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVA 266 (438)
T ss_dssp --GGGEEECCCCCCTTTSCCC----C----------------HHHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHH
T ss_pred --HHHEEEECCCCCCCCCCCCCCCHH----------------HHHHHHCCC--CCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf --202688269766110478662024----------------566886089--989848999743156679899999999
Q ss_pred HHHCCCC--CEEEEEEEC----CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 8232499--829999945----5798885325779999999999997199993999016567568278999998128399
Q 003726 585 KSSKLRE--LVNLVVVGG----YMDVKNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVF 658 (800)
Q Consensus 585 ~l~~~~~--~v~LvIVG~----g~~~~~~~~~e~~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aadvf 658 (800)
.+.+..+ +++|+|+|+ |.. .+.+.++++++++.++|.|+| .++.+++..+++. +|++
T Consensus 267 ~l~~~~p~~~~~l~i~G~~~~~g~~------------~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~ 329 (438)
T 3c48_A 267 ALFDRDPDRNLRVIICGGPSGPNAT------------PDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIV 329 (438)
T ss_dssp HHHHHCTTCSEEEEEECCBC------------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEE
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCH------------HHHHHHHHHHCCCCCCEEECC----CCCHHHHHHHHHH-CCEE
T ss_conf 9996397766699998188877727------------899999999719878689858----8985889999985-8999
Q ss_pred EECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 96699887838999999839968992755632111028529998999999999999999998119999999999999999
Q 003726 659 VQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKR 738 (800)
Q Consensus 659 V~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~lv~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~ 738 (800)
|.||.+|+||++++|||+||+|||+++.||..|++.++.+|+++++.|+++++++|.+++ .|++.+++|+++++++
T Consensus 330 v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~ 405 (438)
T 3c48_A 330 AVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEH 405 (438)
T ss_dssp EECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHH
T ss_conf 987402687559999987699889627987257750797279879999999999999997----5989999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHH
Q ss_conf 99948999999999999998
Q 003726 739 IYERYTWKIYSERLLTLAGV 758 (800)
Q Consensus 739 v~e~ysw~~~a~~ll~ly~~ 758 (800)
+.+ |+|+.++++++++|+.
T Consensus 406 ~~~-~s~~~~~~~~~~~~~~ 424 (438)
T 3c48_A 406 ART-FSWAATAAQLSSLYND 424 (438)
T ss_dssp HHH-HHHHHHHHHHHHHHHH
T ss_pred HHH-CCHHHHHHHHHHHHHH
T ss_conf 885-7999999999999999
No 6
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=340.19 Aligned_cols=430 Identities=17% Similarity=0.161 Sum_probs=280.4
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC----------
Q ss_conf 2899994676778766788999980579999999999999999999789950112159937779998886----------
Q 003726 268 FNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTT---------- 337 (800)
Q Consensus 268 ~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~---------- 337 (800)
|||++++...+|. +..||.+.++. .|++.|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred CEEEEEEEECCCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCCCCEEEEEEC
T ss_conf 9699996410466-------56773999999--------99999997498789----99447643454345640578741
Q ss_pred -CCCCCEEE-CCCCCEEEEEECCCCCCCCCCCCCCC--CCCHHH-HHHH--HHHHHHHHHHHHC--CCCEEEEECCCCCH
Q ss_conf -66541000-58877499994157777411012455--687014-9999--9999999999809--99609998799906
Q 003726 338 -CNQRLERI-SGTEHTHILRVPFRTENGILRKWISR--FDVWPY-LETF--AEDASNEIAAELQ--GVPDLIIGNYSDGN 408 (800)
Q Consensus 338 -~~~~~e~~-~g~~~v~I~Rvp~~~~~~~~~~~isr--~~i~~y-l~~f--~~~~~~~ll~~~~--~kPDIIh~~~~~~~ 408 (800)
.+...+.. ....++.+++++......-....... ..-|+. ..++ .......+++... .+|||||+|.+..+
T Consensus 62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~ 141 (485)
T 2qzs_A 62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAG 141 (485)
T ss_dssp CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGT
T ss_pred CCCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
T ss_conf 56871799999878947999708265068987667754577873589999999999999998456789978996062133
Q ss_pred HHHHHHH-HCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHH------HCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCC
Q ss_conf 9999998-4389709999639865569-9971368765432------101003248898712389999459788831046
Q 003726 409 LVATLLS-YKLGVTQCNIAHALEKTKY-PDSDLYWRKFEEK------YHFSSQFTADLTAMNNADFIITSTYQEIAGSKN 480 (800)
Q Consensus 409 lva~lla-r~~gip~v~t~H~l~~~~~-~~s~~~~~~~~~~------y~~~~~~~~e~~al~~AD~IIt~S~~ei~~~~~ 480 (800)
+++.+++ +..++|+|.+.|+...... +........+... ..+......++..++.+|.||++|....+...+
T Consensus 142 ~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 221 (485)
T 2qzs_A 142 LAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITE 221 (485)
T ss_dssp THHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTS
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHHHHHC
T ss_conf 78999754368997899946841357889888876499913213111232465469999987538688568899999854
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCC------CC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 7664344434456662144406888------99--965992599778888889947999987310100001697553010
Q 003726 481 NVGQYENHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEH 552 (800)
Q Consensus 481 ~~gqy~~~~~f~~p~l~~vv~Gi~v------~~--~ki~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~ 552 (800)
. ..|.++ .. .++.+||||+|.+.|.|.........-....++.........++.
T Consensus 222 ~------------------~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 283 (485)
T 2qzs_A 222 P------------------QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIA 283 (485)
T ss_dssp H------------------HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHH
T ss_pred C------------------CCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 0------------------1472468999850667866997469876645864442221236630065778849999987
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 16557999969999822788899789999999823249982999994557988853257799999999999971999939
Q 003726 553 VGILNDRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEMAEIEKMHGLIKQYNLHGQF 632 (800)
Q Consensus 553 ~Gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~~~e~~~~~~~l~~li~~~gL~~~V 632 (800)
+|+..++++++|+++||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+.+.+++++++ ++|
T Consensus 284 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v 349 (485)
T 2qzs_A 284 MGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP----------VLQEGFLAAAAEYP--GQV 349 (485)
T ss_dssp HTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH----------HHHHHHHHHHHHST--TTE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH----------HHHHHHHHHHHHCC--CCE
T ss_conf 198889997399996667543587999999999862--7948999928956----------78999999997579--938
Q ss_pred E-ECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CEEEEE
Q ss_conf 9-901656756827899999812839996699887838999999839968992755632111028---------529998
Q 003726 633 R-WISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------VSGFHI 702 (800)
Q Consensus 633 ~-flG~~~~~~~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg---------~~G~lv 702 (800)
. |.|+ +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|+++
T Consensus 350 ~~~~g~-----~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~ 423 (485)
T 2qzs_A 350 GVQIGY-----HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF 423 (485)
T ss_dssp EEEESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE
T ss_pred EEECCC-----CHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCCCCCCEEEE
T ss_conf 994789-----97999999975-889997885678767999999779977987899832552157644344466645997
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999811999999999999999999948999999999999998
Q 003726 703 DPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGV 758 (800)
Q Consensus 703 ~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~ 758 (800)
++.|+++++++|.+++. +..|++.+++|++++++ ++|||+.++++++++|+.
T Consensus 424 ~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~ 475 (485)
T 2qzs_A 424 EDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYR 475 (485)
T ss_dssp CSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH
T ss_conf 78999999999999998-70899999999999876---328989999999999998
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=339.92 Aligned_cols=432 Identities=17% Similarity=0.189 Sum_probs=280.4
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC--C--------
Q ss_conf 289999467677876678899998057999999999999999999978995011215993777999888--6--------
Q 003726 268 FNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGT--T-------- 337 (800)
Q Consensus 268 ~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~--~-------- 337 (800)
|||++++.+.+|. +..||.+.++. +|++.|+++||+|+ |+|...+..... .
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKAAVTDPVKCFEFT 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHHHCCSCEEEEEES
T ss_pred CEEEEEEEEECCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCCCCCEEEEEE
T ss_conf 9699994465156-------56654999999--------99999997698699----99156443344435651368999
Q ss_pred --CCCCCEEE-CCCCCEEEEEECCCCCCCCCCC--CCCC--CCCH-HHHHHH--HHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf --66541000-5887749999415777741101--2455--6870-149999--999999999980--999609998799
Q 003726 338 --CNQRLERI-SGTEHTHILRVPFRTENGILRK--WISR--FDVW-PYLETF--AEDASNEIAAEL--QGVPDLIIGNYS 405 (800)
Q Consensus 338 --~~~~~e~~-~g~~~v~I~Rvp~~~~~~~~~~--~isr--~~i~-~yl~~f--~~~~~~~ll~~~--~~kPDIIh~~~~ 405 (800)
.+...... ....++.+++++..... .+. .... ..-| ....++ .......+++.. ..+|||||+|.+
T Consensus 62 ~~~~~~~~~~~~~~~gv~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~ 139 (485)
T 1rzu_A 62 DLLGEKADLLEVQHERLDLLILDAPAYY--ERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDW 139 (485)
T ss_dssp CSSSCCEEEEEEEETTEEEEEEECHHHH--CSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHH
T ss_pred EECCCEEEEEEEEECCCEEEEEECHHHH--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 8308747899999669569998486772--77766558865666530679999999999999998615799988996463
Q ss_pred CCHHHHHHHHHC--CCCEEEEEECCCCCCC-CCCCHHHH-----HHHH-HHHCCCHHHHHHHHHHCCCCEEEECCHHHHH
Q ss_conf 906999999843--8970999963986556-99971368-----7654-3210100324889871238999945978883
Q 003726 406 DGNLVATLLSYK--LGVTQCNIAHALEKTK-YPDSDLYW-----RKFE-EKYHFSSQFTADLTAMNNADFIITSTYQEIA 476 (800)
Q Consensus 406 ~~~lva~llar~--~gip~v~t~H~l~~~~-~~~s~~~~-----~~~~-~~y~~~~~~~~e~~al~~AD~IIt~S~~ei~ 476 (800)
..++++.++++. .++|+|.+.|+..... ++...... ..+. ....+......++.+++.+|.||++|....+
T Consensus 140 ~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 219 (485)
T 1rzu_A 140 QAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAE 219 (485)
T ss_dssp HHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHH
T ss_conf 05578999731035899789996675446878877873439980320200013256235999888646779960875899
Q ss_pred HCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10467664344434456662144406888999659925997788888899479999873101000016975530101655
Q 003726 477 GSKNNVGQYENHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGIL 556 (800)
Q Consensus 477 ~~~~~~gqy~~~~~f~~p~l~~vv~Gi~v~~~ki~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gll 556 (800)
...+.. | +++++.+ +.....++.+||||+|.+.|.|...............+....+....++.+|+
T Consensus 220 ~~~~~~--~----g~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~- 286 (485)
T 1rzu_A 220 EILTAE--F----GMGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI- 286 (485)
T ss_dssp HTTSHH--H----HTTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTC-
T ss_pred HHHCCC--C----CCCHHHH------HHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 983543--5----7665899------98606881697089860205886651100012432445678869999996298-
Q ss_pred CCCC-CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEE-E
Q ss_conf 7999-9699998227888997899999998232499829999945579888532577999999999999719999399-9
Q 003726 557 NDRS-KPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDVKNSRDREEMAEIEKMHGLIKQYNLHGQFR-W 634 (800)
Q Consensus 557 ~~~~-k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~~~e~~~~~~~l~~li~~~gL~~~V~-f 634 (800)
+++ +++|+++||+.+.||++.|++|+..+.+ ++++|+|+|+|+. .+.+.+.+++++++ ++|. |
T Consensus 287 -~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v~~~ 351 (485)
T 1rzu_A 287 -DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV----------ALEGALLAAASRHH--GRVGVA 351 (485)
T ss_dssp -CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH----------HHHHHHHHHHHHTT--TTEEEE
T ss_pred -CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH----------HHHHHHHHHHHHCC--CCEEEE
T ss_conf -88998399997257531287999999999872--6956999968946----------89999999998678--868994
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CEEEEECCC
Q ss_conf 01656756827899999812839996699887838999999839968992755632111028---------529998999
Q 003726 635 ISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------VSGFHIDPY 705 (800)
Q Consensus 635 lG~~~~~~~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg---------~~G~lv~p~ 705 (800)
.|+ +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|+++++.
T Consensus 352 ~g~-----~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~ 425 (485)
T 1rzu_A 352 IGY-----NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPV 425 (485)
T ss_dssp ESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSC
T ss_pred CCC-----CHHHHHHHHHC-CCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCCEEECCC
T ss_conf 389-----97999999852-999997844688777999999779977980899831132156533234567763486789
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999811999999999999999999948999999999999998
Q 003726 706 HPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGV 758 (800)
Q Consensus 706 d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~ 758 (800)
|+++++++|.+++. +..|++.+++|++++++ ++|||+.++++++++|+.
T Consensus 426 d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~ 474 (485)
T 1rzu_A 426 TLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQ 474 (485)
T ss_dssp SHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHH
T ss_conf 99999999999998-72799999999999998---868969999999999998
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00 E-value=1 Score=329.03 Aligned_cols=368 Identities=19% Similarity=0.297 Sum_probs=279.5
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 50289999467677876678899998057999999999999999999978995011215993777999888666541000
Q 003726 266 MVFNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQRLERI 345 (800)
Q Consensus 266 ~~~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~~~~~~e~~ 345 (800)
+.|||+++++..+ |..||.+.++. .|++.| +||+|+ |+|...+... ....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred CCCEEEEEECCCC---------CCCCHHHHHHH--------HHHHHH--CCCEEE----EEECCCCCCC-------HHHH
T ss_conf 8866999927668---------86551999999--------999985--697689----9977888642-------4443
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCE-EEE
Q ss_conf 5887749999415777741101245568701499999999999999809996099987999069999998438970-999
Q 003726 346 SGTEHTHILRVPFRTENGILRKWISRFDVWPYLETFAEDASNEIAAELQGVPDLIIGNYSDGNLVATLLSYKLGVT-QCN 424 (800)
Q Consensus 346 ~g~~~v~I~Rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~ll~~~~~kPDIIh~~~~~~~lva~llar~~gip-~v~ 424 (800)
....++.+.+++..... ..+ .+.. ....+++.. +||+||+|.+........++++.++| ++.
T Consensus 53 ~~~~~~~~~~~~~~~~~----------~~~----~~~~-~l~~~~~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML----------PTP----TTAH-AMAEIIRER--EIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC----------SCH----HHHH-HHHHHHHHT--TCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEECCCCCCC----------CCH----HHHH-HHHHHHHHC--CCCEEEECCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 34566289984565455----------551----4699-999998763--898899888544889999997518981999
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 96398655699971368765432101003248898712389999459788831046766434443445666214440688
Q 003726 425 IAHALEKTKYPDSDLYWRKFEEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNNVGQYENHTAFTLPGLYRVVHGID 504 (800)
Q Consensus 425 t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~ei~~~~~~~gqy~~~~~f~~p~l~~vv~Gi~ 504 (800)
+.|+... .|... . ......+..++.+|.++++|....+...+. .+
T Consensus 116 ~~h~~~~--------~~~~~-~-----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~-- 160 (394)
T 3okp_A 116 STHGHEV--------GWSML-P-----GSRQSLRKIGTEVDVLTYISQYTLRRFKSA-------------------FG-- 160 (394)
T ss_dssp ECCSTHH--------HHTTS-H-----HHHHHHHHHHHHCSEEEESCHHHHHHHHHH-------------------HC--
T ss_pred EECCCHH--------HHHHC-C-----HHHHHHHHHHHHCCEEEECCHHHHHHHHHH-------------------CC--
T ss_conf 9346423--------33212-2-----034899999986797997688999999984-------------------18--
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89996599259977888888994799998731010000169755301016557999969999822788899789999999
Q 003726 505 VFDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGILNDRSKPLIFSMARLDGVKNLTGLVECYG 584 (800)
Q Consensus 505 v~~~ki~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~ 584 (800)
...++.+||||+|.+.|.+....... ..++.+|+ ++++++++++||+.+.||++.+++++.
T Consensus 161 -~~~~~~vi~ngv~~~~~~~~~~~~~~----------------~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 161 -SHPTFEHLPSGVDVKRFTPATPEDKS----------------ATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp -SSSEEEECCCCBCTTTSCCCCHHHHH----------------HHHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred -CCCCEEEECCCCCHHHCCCCCCHHHH----------------HHHHHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf -99985883698588875887721468----------------99986499--857669999764413458879999999
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 82324998299999455798885325779999999999997199993999016567568278999998128399966998
Q 003726 585 KSSKLRELVNLVVVGGYMDVKNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFY 664 (800)
Q Consensus 585 ~l~~~~~~v~LvIVG~g~~~~~~~~~e~~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aadvfV~PS~~ 664 (800)
++.+..++++|+|+|+++. .+.+.+++ .++.++|.|+| .++.+++..+++. +|++|.||.+
T Consensus 222 ~l~~~~~~~~l~i~G~g~~------------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~ 282 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY------------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPART 282 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT------------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCC
T ss_pred HHHHHCCCEEEEEECCCHH------------HHHHHHHH--HCCCCEEEECC----CCCHHHHHHHHHH-CCEEEECCCC
T ss_conf 9886189869999868647------------99999987--55457299907----8997899999986-8999945755
Q ss_pred -------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf -------8783899999983996899275563211102852999899999999999999999811999999999999999
Q 003726 665 -------EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLK 737 (800)
Q Consensus 665 -------E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~lv~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~ 737 (800)
|+||++++|||+||+|||+++.||..|++.++ +|+++++.|+++++++|.+++ .|++.++++++++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~ 357 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRA 357 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHH
T ss_conf 566656555673999999759979993899737787468-856728999999999999998----199999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999948999999999999998
Q 003726 738 RIYERYTWKIYSERLLTLAGV 758 (800)
Q Consensus 738 ~v~e~ysw~~~a~~ll~ly~~ 758 (800)
.+.++|||+.++++++++|+.
T Consensus 358 ~~~~~~s~~~~~~~~~~~~~~ 378 (394)
T 3okp_A 358 HVEAEWSWEIMGERLTNILQS 378 (394)
T ss_dssp HHHHHTBHHHHHHHHHHHHHS
T ss_pred HHHHHCCHHHHHHHHHHHHHH
T ss_conf 998747999999999999997
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00 E-value=1 Score=326.21 Aligned_cols=359 Identities=18% Similarity=0.264 Sum_probs=267.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99980579999999999999999999789950112159937779998886665410005887749999415777741101
Q 003726 288 PDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQRLERISGTEHTHILRVPFRTENGILRK 367 (800)
Q Consensus 288 p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~~~~~~e~~~g~~~v~I~Rvp~~~~~~~~~~ 367 (800)
|..||.+.++. +|++.|+++||+|+ |+|...+... . ....++.+..++.....
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~--------~--~~~~~i~~~~~~~~~~~----- 76 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRL--------N--KVYPNIYFHEVTVNQYS----- 76 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC--------C--CCCCCEEEEECCCCCCC-----
T ss_conf 89898789999--------99999996898799----9968887762--------0--03786289852566654-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHCC--CCEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 24556870149999999999999980999609998799906-9999998438--97099996398655699971368765
Q 003726 368 WISRFDVWPYLETFAEDASNEIAAELQGVPDLIIGNYSDGN-LVATLLSYKL--GVTQCNIAHALEKTKYPDSDLYWRKF 444 (800)
Q Consensus 368 ~isr~~i~~yl~~f~~~~~~~ll~~~~~kPDIIh~~~~~~~-lva~llar~~--gip~v~t~H~l~~~~~~~s~~~~~~~ 444 (800)
.+...++...+...+. .+++.. +||+||+|++... +.+.+.++.. ++|++.+.|+..........
T Consensus 77 ---~~~~~~~~~~~~~~l~-~~l~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~------ 144 (394)
T 2jjm_A 77 ---VFQYPPYDLALASKMA-EVAQRE--NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDP------ 144 (394)
T ss_dssp ----CCSCCHHHHHHHHHH-HHHHHH--TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCT------
T ss_pred ---CCCCCCCCHHHHHHHH-HHHHHC--CCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH------
T ss_conf ---0015652079999999-999776--9999997243377788999888626787779997157521258887------
Q ss_pred HHHHCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 43210100324889871238999945978883104676643444344566621444068889996599259977888888
Q 003726 445 EEKYHFSSQFTADLTAMNNADFIITSTYQEIAGSKNNVGQYENHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFP 524 (800)
Q Consensus 445 ~~~y~~~~~~~~e~~al~~AD~IIt~S~~ei~~~~~~~gqy~~~~~f~~p~l~~vv~Gi~v~~~ki~VIpnGvD~~~f~p 524 (800)
. ....+...++.+|.++++|....+...+. .+. ..++.+||||+|...|.+
T Consensus 145 --~-----~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-------------------~~~---~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 145 --S-----LNNLIRFGIEQSDVVTAVSHSLINETHEL-------------------VKP---NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp --T-----THHHHHHHHHHSSEEEESCHHHHHHHHHH-------------------TCC---SSCEEECCCCCCTTTCCC
T ss_pred --H-----HHHHHHHHHHHCCEEEECCHHHHHHHHHH-------------------HCC---CCCEEEECCCCCHHHCCC
T ss_conf --7-----88999999861998999799999999985-------------------287---656799558756876088
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 99479999873101000016975530101655799996999982278889978999999982324998299999455798
Q 003726 525 YSDKEKRLIALHGQIEDLLYDPKQNDEHVGILNDRSKPLIFSMARLDGVKNLTGLVECYGKSSKLRELVNLVVVGGYMDV 604 (800)
Q Consensus 525 ~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~ 604 (800)
......+ +.+|+ ++++++++++||+.+.||++.+++|+..+.+. .+++|+++|+++.
T Consensus 196 ~~~~~~~-------------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQLK-------------------KEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHHHH-------------------HHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred CCHHHHH-------------------HHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCHH-
T ss_conf 6348899-------------------87199--98880899950466535889999999999853-7978999889657-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEC
Q ss_conf 88532577999999999999719999399901656756827899999812839996699887838999999839968992
Q 003726 605 KNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFYEAFGLTVVEAMTCGLPTFAT 684 (800)
Q Consensus 605 ~~~~~~e~~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIAT 684 (800)
.+.+.++++++++.++|.|+|. .+++..+++. +|++|+||.+|+||++++|||+||+|||++
T Consensus 253 -----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 253 -----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp -----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHHCCCCCEEEEECC------HHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf -----------9999999997399875999276------6659999986-789996566678726899999649988981
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 755632111028529998999999999999999998119999999999999999999489999999999999982
Q 003726 685 CHGGPAEIIEHGVSGFHIDPYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERYTWKIYSERLLTLAGVY 759 (800)
Q Consensus 685 ~~GG~~EiI~dg~~G~lv~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~ 759 (800)
+.||..|++.++.+|+++++.|+++++++|.+++ .|++.+++|++++++++.++|||+.++++++++|+..
T Consensus 315 ~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 385 (394)
T 2jjm_A 315 RVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDV 385 (394)
T ss_dssp CCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 5898077763488539968999999999999997----4979999999999999987379999999999999999
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=322.46 Aligned_cols=367 Identities=16% Similarity=0.207 Sum_probs=262.6
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf 28999946767787667889999805799999999999999999997899501121599377799988866654100058
Q 003726 268 FNVVIVSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQNQGLDVIPKILIVTRLIPDAKGTTCNQRLERISG 347 (800)
Q Consensus 268 ~rIliis~hg~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~G~eV~~~i~ViTr~~p~~~g~~~~~~~e~~~g 347 (800)
|||++++++..+ .||.+.++. +|++.|+++||+|+ |+|.......
T Consensus 1 MkIl~i~~~~~~----------~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYFP----------FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC------------- 45 (374)
T ss_dssp -CEEEECSEECT----------TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred CEEEEEEEECCC----------CCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-------------
T ss_conf 969999721588----------761635999--------99999996798489----9964898878-------------
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC
Q ss_conf 87749999415777741101245568701499999999999999809996099987999069999998438970999963
Q 003726 348 TEHTHILRVPFRTENGILRKWISRFDVWPYLETFAEDASNEIAAELQGVPDLIIGNYSDGNLVATLLSYKLGVTQCNIAH 427 (800)
Q Consensus 348 ~~~v~I~Rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~ll~~~~~kPDIIh~~~~~~~lva~llar~~gip~v~t~H 427 (800)
..++.+.++|...... ......+... ...+++. .+||+||+|.+..+..+...++..+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~-l~~~i~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAW-VQNHLKE--HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHH-HHHHHHH--SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCC-----------HHHHHHHHHH-HHHHHHC--CCCCEEEEECCCCCCEEEECCCCCCCEEEEECC
T ss_conf 8774799971686443-----------0167789999-9999850--699889996677885213001565421333035
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH--CCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 9865569997136876543210100324889871--23899994597888310467664344434456662144406888
Q 003726 428 ALEKTKYPDSDLYWRKFEEKYHFSSQFTADLTAM--NNADFIITSTYQEIAGSKNNVGQYENHTAFTLPGLYRVVHGIDV 505 (800)
Q Consensus 428 ~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~al--~~AD~IIt~S~~ei~~~~~~~gqy~~~~~f~~p~l~~vv~Gi~v 505 (800)
+... .....+.+.. ..+...+ +.+|.++++|+...+...+ ..|++
T Consensus 112 ~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~-------------------~~~~~- 158 (374)
T 2iw1_A 112 GFLY-----------RLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQK-------------------HYQTE- 158 (374)
T ss_dssp CHHH-----------HTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHH-------------------HHCCC-
T ss_pred CCHH-----------HHCHHHHHHH--HHHHHHHHCCCCCEEEECCHHHHHHHHH-------------------HHCCC-
T ss_conf 6212-----------1047789999--9999986426775799869899999999-------------------71897-
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99965992599778888889947999987310100001697553010165579999699998227888997899999998
Q 003726 506 FDPKFNIVSPGADMCIYFPYSDKEKRLIALHGQIEDLLYDPKQNDEHVGILNDRSKPLIFSMARLDGVKNLTGLVECYGK 585 (800)
Q Consensus 506 ~~~ki~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~ 585 (800)
..++.+||||+|.+.|.+......+ ...++.+|+ ++++++++++||+.+.||++.+++++..
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSR---------------EIYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHH---------------HHHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -HHHEEEECCCCCHHHCCCCCCHHHH---------------HHHHHHHCC--CCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf -1106885698587761764423579---------------999997289--9787299996464101388999999998
Q ss_pred HHCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 2324-998299999455798885325779999999999997199993999016567568278999998128399966998
Q 003726 586 SSKL-RELVNLVVVGGYMDVKNSRDREEMAEIEKMHGLIKQYNLHGQFRWISAQMNRVRNGELYRYIADTRGVFVQPAFY 664 (800)
Q Consensus 586 l~~~-~~~v~LvIVG~g~~~~~~~~~e~~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aadvfV~PS~~ 664 (800)
+.+. .++++|+++|++.. +.+.++++++++.++|.|+|. .+++..+++. +|++|.||.+
T Consensus 221 l~~~~~~~~~l~i~G~g~~-------------~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~~-ad~~v~ps~~ 280 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP-------------RKFEALAEKLGVRSNVHFFSG------RNDVSELMAA-ADLLLHPAYQ 280 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC-------------HHHHHHHHHHTCGGGEEEESC------CSCHHHHHHH-CSEEEECCSC
T ss_pred HHHCCCCCEEEEEECCCCH-------------HHHHHHHHHCCCCCCEEECCC------CCCHHHHHHH-CCEEEECCCC
T ss_conf 6760488669999708987-------------999999997398773797788------4038999984-6889835424
Q ss_pred CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 878389999998399689927556321110285299989-9999999999999999811999999999999999999948
Q 003726 665 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGVSGFHID-PYHPDQVAELMIEFFEKCYNDPSHWNKISDGGLKRIYERY 743 (800)
Q Consensus 665 E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~lv~-p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~y 743 (800)
|+||++++|||+||+|||+++.||..|++.++.+|++++ +.|+++++++|.+++ .|++.++++++++++.+ +++
T Consensus 281 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~-~~~ 355 (374)
T 2iw1_A 281 EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYA-DTQ 355 (374)
T ss_dssp CSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HHS
T ss_pred CCCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-HHH
T ss_conf 7755699999977998898269980444306983199679999899999999997----19499999999999999-875
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9999999999999982
Q 003726 744 TWKIYSERLLTLAGVY 759 (800)
Q Consensus 744 sw~~~a~~ll~ly~~~ 759 (800)
+|...++++.++++.+
T Consensus 356 ~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 356 DLYSLPEKAADIITGG 371 (374)
T ss_dssp CCSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 3899999999999986
Done!