BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003727
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/816 (42%), Positives = 498/816 (61%), Gaps = 27/816 (3%)
Query: 1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPG 60
+ +LNDG KV+ P++F I Y Y+KGGI T+VK P+ I+FK L++ L +P
Sbjct: 210 LDKLNDGTLFKVEVLGPFAFRIGS-VKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNP- 267
Query: 61 DFLLSDFSKFDRPPVLHLAFQALDKF-IQELGRFPVAGSEEDAQKIISLFTNINDNLADE 119
+F+ SDF+KFDR LHL FQAL +F ++ G P ++EDA ++I L T+++ +
Sbjct: 268 EFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEV 327
Query: 120 RVEEID--HKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 177
E +D L+ ++ AR + + A FGG+V QEV+KACSGKF PL QF YFDS+ES
Sbjct: 328 LGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLES 387
Query: 178 LPSE---PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALM 234
LP P + + QP+NSRYD QI+VFG QKK+ +KVF+VGSGA+GCE LKN AL+
Sbjct: 388 LPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALL 447
Query: 235 GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTE--AL 292
G+ G+ G + +TD+D IEKSNL+RQFLFR ++G+ KS V +NP L + A
Sbjct: 448 GLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAK 507
Query: 293 QIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLGAKCNTQ 352
+ PETE +FND+FWE R Y+D+RC++++KPLLESGTLG K NTQ
Sbjct: 508 IDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQ 567
Query: 353 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLT 412
++IP LTE+Y +SRDPPEK P+CT+ SFP+ IDH + WA+S F+G + VN YLT
Sbjct: 568 VIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLT 627
Query: 413 SPTEYASAMKNAGDAQARDNLDRVLECLD---KERCETFQDCITWARLRFEDYFADRVKQ 469
P +K +GD + VLE + + F+DCI WARL FE F +KQ
Sbjct: 628 QPNFVEQTLKQSGDVKG------VLESISDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQ 681
Query: 470 LTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWV 529
L F FP++A TSNG PFWS KR P PL+F + + H F++A + LRA YGI D
Sbjct: 682 LLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSN 741
Query: 530 KSPV--KLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINXXXXXXXXXXX 587
P + ++ +I+P+F P N+KI+ ++ + + + + I+
Sbjct: 742 SKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPST 801
Query: 588 XXPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIAT 647
G+K+ P+ FEKDDDTN H++ I +N RA+NY I D+ K KFIAGRIIPAIAT
Sbjct: 802 L--AGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIAT 859
Query: 648 STAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVW 706
+T++ TGLV LELYK++D +E Y+N F NLALP F +EP+ ++ + + +W
Sbjct: 860 TTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIW 919
Query: 707 DRWILRDNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRD 763
DR+ ++ + L L++ + D+GL +SYG LL+ S FP + KER++ + LV+
Sbjct: 920 DRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKL 979
Query: 764 VAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 799
V K ++P + + + D++ D+++P I+I+
Sbjct: 980 VTKKDIPAHVSTMILEICADDKEGEDVEVPFITIHL 1015
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252
S Y Q+ V G + K++ + V ++G LG E KN+ L GV +T+ D + +
Sbjct: 8 SLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKS-----MTVFDPEPV 62
Query: 253 EKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEAL 292
+ ++LS QF + +IGQ + V +N ++ L
Sbjct: 63 QLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVL 102
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/805 (41%), Positives = 488/805 (60%), Gaps = 20/805 (2%)
Query: 1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPG 60
M LNDG PRKV+ PY+FSI + + G+ TQVK P I+FK LRE+LKDP
Sbjct: 207 MPGLNDGTPRKVEVKGPYTFSIG-SVKDLGSAGYNGVFTQVKVPTKISFKSLRESLKDP- 264
Query: 61 DFLLSDFSKFDRPPVLHLAFQALDKFIQ-ELGRFPVAGSEEDAQKIISLFTNINDNLADE 119
+++ DF K RPP H+AFQAL F G P ++ DA + I L +
Sbjct: 265 EYVYPDFGKMMRPPQYHIAFQALSAFADAHEGSLPRPRNDIDAAEFFEFCKKIASTLQFD 324
Query: 120 RVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLP 179
E+D KL+ ++ AR L M+A GG V QEV+KA + KF+PL Q+FYFDS+ESLP
Sbjct: 325 V--ELDEKLIKEISYQARGDLVAMSAFLGGAVAQEVLKATTSKFYPLKQYFYFDSLESLP 382
Query: 180 SE-PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSC 238
S + +P RYD QI+VFGS+ Q+K+ F+VG+GA+GCE LKN A+MGV+
Sbjct: 383 SSVTISEETCKPRGCRYDGQIAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVAT 442
Query: 239 GNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTE--ALQIRA 296
G G +++TD D IEKSNL+RQFLFR ++G+ KS ++NP L + + Q R
Sbjct: 443 GESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERV 502
Query: 297 NPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIP 356
PE+E +F D F+E R+Y+D+RC++F+KPLLESGTLG K NTQ+V+P
Sbjct: 503 GPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGNTQVVVP 562
Query: 357 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTE 416
HLTE+YG+S+DPPEK P+CT+ +FP+ I+H + WAR FEGL ++ VN YL+SP
Sbjct: 563 HLTESYGSSQDPPEKSFPICTLKNFPNRIEHTIAWARDLFEGLFKQPIDNVNMYLSSPNF 622
Query: 417 YASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPE 476
+++K + + R+ L+ + + L E+ +F++CI WARL+F+ +F + ++QL F FP+
Sbjct: 623 LETSLKTS--SNPREVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPK 680
Query: 477 NATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLA 536
++ TS G PFWS PKR P PL F + + H F++AA+ L A YG+ P
Sbjct: 681 DSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYAFNYGL---KSETDPAIYE 737
Query: 537 DAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINXXXXXXXXXXXXXPTGYKMN 596
+ P F PK +KI+ +E + T + D + G+++
Sbjct: 738 RVLAGYNPPPFAPKSGIKIQVNENEEAPETAANKDKQELKSIADSLPPPSSL--VGFRLT 795
Query: 597 PIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLV 656
P +FEKDDD+N H+D I +N+RA NY I D+ K KF+AG+I+PA+ TSTA+ +GLV
Sbjct: 796 PAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLV 855
Query: 657 CLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVFKHQDMSWTVWDRWILRDNP 715
CLEL K++DG K+E+Y+N F NLA+ LF+ ++P+ PK+ + +WDR+ L D
Sbjct: 856 CLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLPDC- 914
Query: 716 TLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFPRHK--ERMDKKVVDLVRDVAKAELPPY 772
TL++L+ + Q ++GL +S G LL+ + P K ER+ K+ +LV + K +L P+
Sbjct: 915 TLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPF 974
Query: 773 RQHFDVVVACVDEDDNDIDIPQISI 797
R+H + + C D + D+++P I I
Sbjct: 975 RKHLVLEICCDDANGEDVEVPFICI 999
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 195 YDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEK 254
Y Q+ V G + K++ ++ V ++G LG E KN+ L GV +T+ D
Sbjct: 9 YSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVK-----SVTLYDPQPTRI 63
Query: 255 SNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHL 287
+LS Q+ + +IG ++ V +N ++
Sbjct: 64 EDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYV 96
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 155/273 (56%), Gaps = 7/273 (2%)
Query: 370 EKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQA 429
EK P+CT+ +FP+ I+H L WAR EFEGL ++ VN YLT ++ AG Q
Sbjct: 11 EKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAG-TQP 69
Query: 430 RDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSA 489
+ L+ V L +R +T+ DC+TWA + + + ++QL FP + TS+G PFWS
Sbjct: 70 LEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSG 129
Query: 490 PKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQP 549
PKR P PL F V++ HL ++MAA+ L A+TYG+ + +A + V VP+F P
Sbjct: 130 PKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTP 186
Query: 550 KENVKIETDEKATSMSTGSIDDAVVINXXXXXXXXXXXXXPTGYKMNPIQFEKDDDTNFH 609
K VKI ++ + S+DD+ + G+KM PI FEKDDD+NFH
Sbjct: 187 KSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKL---PGFKMYPIDFEKDDDSNFH 243
Query: 610 MDLIAGLANMRARNYGIPEVDKLKAKFIAGRII 642
MD I +N+RA NY I D+ K+K IAG+II
Sbjct: 244 MDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 10/203 (4%)
Query: 205 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 264
+L + + +V VVG+G +GCE LKNL L G S + + D D I+ SNL+RQFLF+
Sbjct: 12 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 66
Query: 265 DWNIGQAKSTVXXXXXXLINPHLNTEALQIR-ANPETENVFNDTFWEXXXXXXXXXXXXX 323
++G++K+ V P N A NP+ +N F+
Sbjct: 67 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD----YNVEFFRQFILVMNALDNRA 122
Query: 324 XRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPH 383
R ++++ CL PL+ESGT G + +TE Y P ++ P CT+ + P
Sbjct: 123 ARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPS 182
Query: 384 NIDHCLTWARSEFEGLLEKTPAE 406
HC+ WA+ F L + A+
Sbjct: 183 EPIHCIVWAKYLFNQLFGEEDAD 205
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 600 FEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 659
++KDD + MD + AN+R + + + K +AG IIPAIAT+ A+ GL+ LE
Sbjct: 346 WDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLE 403
Query: 660 LYKVLDGGHKLEDYRNTFAN 679
K+L G K++ R F N
Sbjct: 404 GLKILSG--KIDQCRTIFLN 421
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 10/203 (4%)
Query: 205 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 264
+L + + +V VVG+G +GCE LKNL L G S + + D D I+ SNL+RQFLF+
Sbjct: 30 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 84
Query: 265 DWNIGQAKSTVXXXXXXLINPHLNTEALQIR-ANPETENVFNDTFWEXXXXXXXXXXXXX 323
++G++K+ V P N A NP+ +N F+
Sbjct: 85 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD----YNVEFFRQFILVMNALDNRA 140
Query: 324 XRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPH 383
R ++++ CL PL+ESGT G + +TE Y P ++ P CT+ + P
Sbjct: 141 ARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPS 200
Query: 384 NIDHCLTWARSEFEGLLEKTPAE 406
HC+ WA+ F L + A+
Sbjct: 201 EPIHCIVWAKYLFNQLFGEEDAD 223
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D MD + AN+R + + + K +AG IIPAIAT+ A+ GL+ LE K
Sbjct: 365 DKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLK 424
Query: 663 VLDGGHKLEDYRNTFAN 679
+L G K++ R F N
Sbjct: 425 ILSG--KIDQCRTIFLN 439
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PMCT+ S P +HC+ + R
Sbjct: 202 QVNFPMCTIASMPRLPEHCIEYVR 225
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 63 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 117
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 118 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 170
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 171 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 230
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PMCT+ S P +HC+ + R
Sbjct: 231 QVNFPMCTIASMPRLPEHCIEYVR 254
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 271 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330
Query: 663 V 663
+
Sbjct: 331 I 331
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 44 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 98
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 99 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 151
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 152 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 211
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PMCT+ S P +HC+ + R
Sbjct: 212 QVNFPMCTIASMPRLPEHCIEYVR 235
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 252 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 311
Query: 663 V 663
+
Sbjct: 312 I 312
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 405 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 459
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 460 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 512
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 513 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 572
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PMCT+ S P +HC+ + R
Sbjct: 573 QVNFPMCTIASMPRLPEHCIEYVR 596
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 613 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 672
Query: 663 V 663
+
Sbjct: 673 I 673
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 10/203 (4%)
Query: 205 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 264
+L + + +V VVG+G +GCE LKNL L G S + + D D I+ SNL+RQFLF+
Sbjct: 10 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 64
Query: 265 DWNIGQAKSTVXXXXXXLINPHLNTEALQIR-ANPETENVFNDTFWEXXXXXXXXXXXXX 323
++G++K+ V P N A NP+ +N F+
Sbjct: 65 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD----YNVEFFRQFILVMNALDNRA 120
Query: 324 XRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPH 383
R ++++ CL PL+ESGT G + +TE Y P ++ P T+ + P
Sbjct: 121 ARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPS 180
Query: 384 NIDHCLTWARSEFEGLLEKTPAE 406
HC+ WA+ F L + A+
Sbjct: 181 EPIHCIVWAKYLFNQLFGEEDAD 203
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D MD + AN+R + + + K +AG IIPAIAT+ A+ GL+ LE K
Sbjct: 345 DKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLK 404
Query: 663 VLDGGHKLEDYRNTFAN 679
+L G K++ R F N
Sbjct: 405 ILSG--KIDQCRTIFLN 419
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N Q+++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPP 201
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PM T+ S P +HC+ + R
Sbjct: 202 QVNFPMATIASMPRLPEHCIEYVR 225
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 31 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 85
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 86 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 138
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 139 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 198
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PM T+ S P +HC+ + R
Sbjct: 199 QVNFPMATIASMPRLPEHCIEYVR 222
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 239 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 298
Query: 663 VLDGGH 668
+ +
Sbjct: 299 IATSAY 304
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PM T+ S P +HC+ + R
Sbjct: 202 QVNFPMATIASMPRLPEHCIEYVR 225
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 323
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 324 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 369
R +I+ + PL++ GT G K N +++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPP 201
Query: 370 EKQAPMCTVHSFPHNIDHCLTWAR 393
+ PM T+ S P +HC+ + R
Sbjct: 202 QVNFPMATIASMPRLPEHCIEYVR 225
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 603 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 194 RYDAQISVFGSKL--QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251
RY+ QI + G Q+ L++++V +VG G LGC + LA GV G LT+ D D
Sbjct: 11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGV-----GNLTLLDFDT 65
Query: 252 IEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHL 287
+ SNL RQ L D +GQ K INPH+
Sbjct: 66 VSLSNLQRQTLHSDATVGQPKVESARDALTRINPHI 101
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 194 RYDAQISVFGSKL--QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251
RY QI + L Q+KL +++V ++G G LG LA GV G L + DDD
Sbjct: 10 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 64
Query: 252 IEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPE 299
+ SNL RQ LF +I + KS V +NP + ALQ R E
Sbjct: 65 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGE 112
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 194 RYDAQISVFGSKL--QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251
RY QI + L Q+KL +++V ++G G LG LA GV G L + DDD
Sbjct: 8 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 62
Query: 252 IEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPE 299
+ SNL RQ LF +I + KS V +NP + ALQ R E
Sbjct: 63 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGE 110
>pdb|2V31|A Chain A, Structure Of First Catalytic Cysteine Half-Domain Of Mouse
Ubiquitin-Activating Enzyme
Length = 112
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREAL 56
M +LN +P ++K PY+FSI DT+N+S Y +GGIV+QVK PK I+FK L +L
Sbjct: 56 MIQLNGCQPMEIKVLGPYTFSIC-DTSNFSDYIRGGIVSQVKVPKKISFKSLPASL 110
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252
++YD QI ++G + QK+L ++V +VG LG E KNL L GV LT+ D + +
Sbjct: 17 AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVK-----GLTMLDHEQV 71
Query: 253 EKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLN--TEALQIRANPET 300
+ QFL R ++G+ ++ +NP ++ + I PE+
Sbjct: 72 TPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPES 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 29/150 (19%)
Query: 39 TQVKQPKIINFKPLREALKDPGDFLLSDFSK------FDRPPVLHLAFQALDKFIQELGR 92
T VK K + F P++EAL+ D+S R + Q L KF + GR
Sbjct: 205 TMVK--KKVVFCPVKEALE-------VDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGR 255
Query: 93 FPVAGS-EEDAQKIISLFTNINDNLADERVEEIDHKLL----CHFAFGARAVLNPMAAMF 147
P + + EED++ ++ + ++ D+L I LL + F A P+ A+
Sbjct: 256 DPSSDTYEEDSELLLQIRNDVLDSLG------ISPDLLPEDFVRYCFSEMA---PVCAVV 306
Query: 148 GGIVGQEVVKACSGKFHPLLQFFYFDSVES 177
GGI+ QE+VKA S + P FF+FD ++
Sbjct: 307 GGILAQEIVKALSQRDPPHNNFFFFDGMKG 336
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
+Q KL+ AKV ++G G +G LA G+ G++ + D+D IE +NL+RQ LF +
Sbjct: 112 VQDKLKNAKVVILGCGGIGNHVSVILATSGI-----GEIILIDNDQIENTNLTRQVLFSE 166
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETE 301
++G+ K+ V N ++ + + N T+
Sbjct: 167 DDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTD 202
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 206 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
+Q KL+ AKV ++G G +G LA G+ G++ + D+D IE +NL+RQ LF +
Sbjct: 109 VQDKLKNAKVVILGCGGIGNHVSVILATSGI-----GEIILIDNDQIENTNLTRQVLFSE 163
Query: 266 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETE 301
++G+ K+ V N ++ + + N T+
Sbjct: 164 DDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTD 199
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 194 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 254 KSNLSRQFLFRDWNIGQAKS 273
+ F + +IG+ ++
Sbjct: 69 GEDAGNNFFLQRSSIGKNRA 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 61 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 111
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 407 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 466
Query: 112 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 467 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 510
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 194 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 254 KSNLSRQFLFRDWNIGQAKS 273
+ F + +IG+ ++
Sbjct: 67 GEDAGNNFFLQRSSIGKNRA 86
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 61 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 111
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 405 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 464
Query: 112 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 465 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 508
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 194 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 254 KSNLSRQFLFRDWNIGQAKS 273
+ F + +IG+ ++
Sbjct: 67 GEDAGNNFFLQRSSIGKNRA 86
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 61 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 111
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 410 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 469
Query: 112 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 470 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 513
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 194 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 15 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 69
Query: 254 KSNLSRQFLFRDWNIGQAKS 273
+ F + +IG+ ++
Sbjct: 70 GEDAGNNFFLQRSSIGKNRA 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 61 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 111
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 413 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 472
Query: 112 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 473 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 516
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 194 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 254 KSNLSRQFLFRDWNIGQAKS 273
+ F + +IG+ ++
Sbjct: 69 GEDAGNNFFLQRSSIGKNRA 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 61 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 111
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 412 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 471
Query: 112 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 472 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 515
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 270 QAKSTVXXXXXXLINPHLNTEALQI 294
+ K+ + I P ++ +++
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKL 404
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 270 QAKSTVXXXXXXLINPHLNTEALQI 294
+ K+ + I P ++ +++
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKL 404
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 378
Query: 270 QAKSTVXXXXXXLINPHLNTEALQI 294
+ K+ + I P ++ +++
Sbjct: 379 KPKAELAAASLKRIFPLMDATGVKL 403
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDAG 378
Query: 270 QAKSTVXXXXXXLINPHLNTEALQI 294
+ K+ + I P ++ +++
Sbjct: 379 KPKAELAAASLKRIFPLMDATGVKL 403
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 86
Query: 270 QAKSTVXXXXXXLINPHLNTEALQI 294
+ K+ + I P ++ +++
Sbjct: 87 KPKAELAAASLKRIFPLMDATGVKL 111
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 36 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 90
Query: 270 QAKSTVXXXXXXLINPHLNTEALQI 294
+ K+ + I P ++ +++
Sbjct: 91 KPKAELAAASLKRIFPLMDATGVKL 115
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 86
Query: 270 QAKSTVXXXXXXLINPHLNTEALQI 294
+ K+ + I P + +++
Sbjct: 87 KPKAELAAASLKRIFPLXDATGVKL 111
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 183 LDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVS 237
L+P D++P N +A LE+A + V+G G+L + NL + G+S
Sbjct: 160 LEPSDVEPXNEAIEA------------LEQADLIVLGPGSLYTSVISNLCVKGIS 202
>pdb|1AKM|A Chain A, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|B Chain B, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|C Chain C, Ornithine Transcarbamylase From Escherichia Coli
pdb|1DUV|G Chain G, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1DUV|H Chain H, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1DUV|I Chain I, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
Length = 333
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 240 NQGKLTITDDDVIEKSNLSRQFLFRD-W-NIGQAKSTVXXXXXXLINPHLNTEALQIRAN 297
N G +T+T+D + K F++ D W ++G+AK L +N++ +Q+ N
Sbjct: 208 NGGNITLTED--VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGN 265
Query: 298 PETE 301
PE +
Sbjct: 266 PEVK 269
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 133 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 177
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 133 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 177
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 142 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 186
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 130 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 174
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 129 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 173
>pdb|2OTC|A Chain A, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|B Chain B, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|C Chain C, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|D Chain D, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|E Chain E, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|F Chain F, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|G Chain G, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|H Chain H, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|I Chain I, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
Length = 333
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 240 NQGKLTITDDDVIEKSNLSRQFLFRD-W-NIGQAKSTVXXXXXXLINPHLNTEALQIRAN 297
N G +T+T+D + K F++ D W ++G+AK L +N++ +Q+ N
Sbjct: 208 NGGNITLTED--VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGN 265
Query: 298 PETE 301
PE +
Sbjct: 266 PEVK 269
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 142 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 186
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYIDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 133 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,952,436
Number of Sequences: 62578
Number of extensions: 1003949
Number of successful extensions: 2266
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2135
Number of HSP's gapped (non-prelim): 83
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)