BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003728
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKV-- 56
+L+V +I+A +PA+D G SDPYV++ L +++F+TKV RK+L+P + E+F+FKV
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79
Query: 57 -EDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKD 115
E LV++V D D++ D +G K+P++ V D + W LQ K+ + K
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHVTEEWRDLQSAEKEEQEK- 135
Query: 116 CGEILLTISF 125
G+I ++ +
Sbjct: 136 LGDICFSLRY 145
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 17/121 (14%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----RFKTKVVRKSLSPSWEEEFSFKV 56
KL V ++EA+N+ MD G SDPYV++ L + + KT + + +L+P + E FSF+V
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 57 ---EDLKDELVISVLDEDKYFNDD-----FVGFLKIPVSRVFDAD---NKSLPTA-WHSL 104
+ K ++V++VLD DK +D FVG+ +D N P A WH+L
Sbjct: 211 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
Query: 105 Q 105
Q
Sbjct: 271 Q 271
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIKFQQ--CDPMWNEIFEYDA--M 593
L V +I+ L A+D G DPYV VF K + K + +P++NE F +
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 594 DEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG-------KLAQA 646
+ L + VYDFD F++ +G ++ D + + W LQ KL
Sbjct: 81 ELAGKTLVMAVYDFDR-FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDI 139
Query: 647 CQS 649
C S
Sbjct: 140 CFS 142
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC--NG---KSRTSSIKFQQCDPMWNEIFEYDA 592
LTV +++ NL +D G DPYV NG K + ++IK +P +NE F ++
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 9/114 (7%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKV-- 56
+L+V +I+A +PA+D G SDPYV++ L +++F+TKV RK+L+P + E+F+FKV
Sbjct: 18 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 77
Query: 57 -EDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNK 109
E LV++V D D++ D +G K+P++ V D + W LQ K
Sbjct: 78 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHVTEEWRDLQSAEK 128
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIKFQQ--CDPMWNEIFEYDAMDE 595
L V +I+ L A+D G DPYV VF K + K + +P++NE F +
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--- 75
Query: 596 PPSMLD-----VEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640
P S L + VYDFD F++ +G ++ D + + W LQ
Sbjct: 76 PYSELGGKTLVMAVYDFDR-FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 124
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 9/110 (8%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKV-- 56
+L+V +I+A +PA+D G SDPYV++ L +++F+TKV RK+L+P + E+F+FKV
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 57 -EDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105
E LV++V D D++ D +G K+P++ V D + W LQ
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHVTEEWRDLQ 141
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIKFQQ--CDPMWNEIFEYDAMDE 595
L V +I+ L A+D G DPYV VF K + K + +P++NE F +
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--- 92
Query: 596 PPSMLD-----VEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640
P S L + VYDFD F++ +G ++ D + + W LQ
Sbjct: 93 PYSELGGKTLVMAVYDFDR-FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 17/131 (12%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDE 62
L V+V++A ++ A D +G SDP+ L+LG R +T V K+L+P W + F+F ++D+ D
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 63 LVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDC-----G 117
L ++V DED DF+G + IP+ + D QP KNKD G
Sbjct: 75 LEVTVFDEDGDKPPDFLGKVAIPLLSIRDG------------QPNCYVLKNKDLEQAFKG 122
Query: 118 EILLTISFSHN 128
I L + +N
Sbjct: 123 VIYLEMDLIYN 133
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 525 GSDHGVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMW 584
GS VK G +L V ++K +L A D SG DP+ + + ++ +P W
Sbjct: 4 GSSGDVKDVG---ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEW 60
Query: 585 NEIFEYDAMDEPPSMLDVEVYDFDG 609
N++F + + + +L+V V+D DG
Sbjct: 61 NKVFTF-PIKDIHDVLEVTVFDEDG 84
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 9/110 (8%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKV-- 56
+L+V +I+A +PA+D G SDPYV++ L +++F+TKV RK+L+P + E+F+FKV
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 57 -EDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105
E LV++V D D++ D +G K+P++ V D + W LQ
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHVTEEWRDLQ 141
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIKFQQ--CDPMWNEIFEYDAMDE 595
L V +I+ L A+D G DPYV VF K + K + +P++NE F +
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--- 92
Query: 596 PPSMLD-----VEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640
P S L + VYDFD F++ +G ++ D + + W LQ
Sbjct: 93 PYSELGGKTLVMAVYDFDR-FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 9/110 (8%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKV-- 56
+L+V +I+A +PA+D G SDPYV++ L +++F+TKV RK+L+P + E+F+FKV
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102
Query: 57 -EDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105
E LV++V D D++ D +G K+P++ V D + W LQ
Sbjct: 103 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHVTEEWRDLQ 149
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIKFQQ--CDPMWNEIFEYDAMDE 595
L V +I+ L A+D G DPYV VF K + K + +P++NE F +
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--- 100
Query: 596 PPSMLD-----VEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640
P S L + VYDFD F++ +G ++ D + + W LQ
Sbjct: 101 PYSELGGKTLVMAVYDFDR-FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-K 60
+L+V VIEA + A NG S+PY + +G Q + T+ ++ +L+P W F ++DL +
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQ 447
Query: 61 DELVISVLDEDKYFNDDFVGFLKIPVSRV 89
D L +++ D D++ DDF+G +IPV+++
Sbjct: 448 DVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 519 QARKQKGSDHGVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ 578
QAR QK S G G L+ V +I+ L A +G +PY + +S T+
Sbjct: 377 QARSQKTS-------GIGRLM-VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQD 428
Query: 579 QCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVK 626
+P WN ++ D +L + ++D D F+ LG EI K
Sbjct: 429 TLNPKWNFNCQFFIKDLYQDVLCLTLFDRD-QFSPDDFLGRTEIPVAK 475
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKV-- 56
+LVVR+++A ++PA D NG+SDPYV++ L +++F+TKV RK+L+P + E F F V
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 81
Query: 57 -EDLKDELVISVLDEDKYFNDDFVG 80
E + +L SV D D++ D +G
Sbjct: 82 AELAQRKLHFSVYDFDRFSRHDLIG 106
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL---GR--QRFKTKVVRKSLSPSWEEEFSFKVE 57
L V +I+A N+ AMD G+SDPYV+ L GR ++ KT + + +L+P++ E F V
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 214
Query: 58 DLKDE---LVISVLDEDKYFNDDFVGFLKI 84
E L I+V+D D +++ +G ++
Sbjct: 215 PESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDA 592
LLTV +IK NL A+D +GF DPYV + K R +SIK +P +NE +D
Sbjct: 154 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 213
Query: 593 MDEPPSM--LDVEVYDFDGPFNEATSLGHAEI 622
E L + V D+D +GH E+
Sbjct: 214 APESVENVGLSIAVVDYD-------CIGHNEV 238
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV---VFTCNGKSRTSSIKFQQCDPMWNEIFEYDA--M 593
L V +++ +L A DS+GF DPYV + K + + + +P++NE F++
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 594 DEPPSMLDVEVYDFD 608
+ L VYDFD
Sbjct: 83 ELAQRKLHFSVYDFD 97
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKV-- 56
+LVVR+++A ++PA D NG+SDPYV++ L +++F+TKV RK+L+P + E F F V
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 57 -EDLKDELVISVLDEDKYFNDDFVG 80
E + +L SV D D++ D +G
Sbjct: 81 AELAQRKLHFSVYDFDRFSRHDLIG 105
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL---GR--QRFKTKVVRKSLSPSWEEEFSFKVE 57
L V +I+A N+ AMD G+SDPYV+ L GR ++ KT + + +L+P++ E F V
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
Query: 58 DLKDE---LVISVLDEDKYFNDDFVGFLKI 84
E L I+V+D D +++ +G ++
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDA 592
LLTV +IK NL A+D +GF DPYV + K R +SIK +P +NE +D
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Query: 593 MDEPPSM--LDVEVYDFDGPFNEATSLGHAEI 622
E L + V D+D +GH E+
Sbjct: 213 APESVENVGLSIAVVDYD-------CIGHNEV 237
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV---VFTCNGKSRTSSIKFQQCDPMWNEIFEYDA--M 593
L V +++ +L A DS+GF DPYV + K + + + +P++NE F++
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 594 DEPPSMLDVEVYDFD 608
+ L VYDFD
Sbjct: 82 ELAQRKLHFSVYDFD 96
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKV 56
KL V V +A+N+ MD NG SDPYV+L+L + KTK +R +L+P W E F+FK+
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 57 E--DLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104
+ D L + + D D+ +DF+G L VS + K + W+ L
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM----KMPASGWYKL 123
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC------NGKSRTSSIKFQQCDPMWNEIFEYDA 592
L V + NL +D +G DPYV K +T +I+ +P WNE F +
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 77
Query: 593 M-DEPPSMLDVEVYDFD 608
+ L VE++D+D
Sbjct: 78 KPSDKDRRLSVEIWDWD 94
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKV 56
KL V V +A+N+ MD NG SDPYV+L+L + KTK +R +L+P W E F+FK+
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 57 E--DLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104
+ D L + + D D+ +DF+G L VS + K + W+ L
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM----KMPASGWYKL 122
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC------NGKSRTSSIKFQQCDPMWNEIFEYDA 592
L V + NL +D +G DPYV K +T +I+ +P WNE F +
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 76
Query: 593 M-DEPPSMLDVEVYDFD 608
+ L VE++D+D
Sbjct: 77 KPSDKDRRLSVEIWDWD 93
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 18/134 (13%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKD 61
K+ + V+ A+ + A D+ G SDPYV +Q+G+ + +TK + +L+P WEE F F+ + D
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 62 ELVISVLDED-----------KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKK 110
+ + VLDED K +DDF+G I V R + W++L + K
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV-RTLSGE----MDVWYNLDKRTDK 132
Query: 111 SKNKDCGEILLTIS 124
S G I L IS
Sbjct: 133 SAV--SGAIRLHIS 144
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPP 597
+++ ++ L A D +G DPYV V K RT +I + +P+W E F ++ +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTI-YGNLNPVWEENFHFECHN-SS 76
Query: 598 SMLDVEVYDFDGPFNEATS----------LGHAEINFVKSDISDLADVWIPLQGKLAQAC 647
+ V V D D LG I +S DVW L + ++
Sbjct: 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV--RTLSGEMDVWYNLDKRTDKSA 134
Query: 648 QS---KLHLRI 655
S +LH+ +
Sbjct: 135 VSGAIRLHISV 145
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 10/111 (9%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFK---- 55
L V++++A+ +PA D +G SDP+V++ L + + +TKV RK+L+P W E F F+
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 56 VEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106
+ ++ L + VLD D++ +D +G + IP+++V D + T W L+P
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV---DLTQMQTFWKDLKP 135
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRT--SSIKFQQCDPMWNEIFEYDAMDE 595
LTV ++K L A D SG DP+V ++ K + +K + +P WNE F ++
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 596 PP---SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640
+L ++V D+D F+ +G I K D++ + W L+
Sbjct: 88 EKVVQRILYLQVLDYDR-FSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 5 VRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVE-- 57
V V EARN+ MD NG SDPYV+L+L + KT+ V+ +L+P W E F F ++
Sbjct: 24 VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPG 83
Query: 58 DLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDA 92
D++ L + V D D+ +DF+G + VS + A
Sbjct: 84 DVERRLSVEVWDWDRTSRNDFMGAMSFGVSELLKA 118
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKV 56
KL V V +A+N+ D NG SDPYV+L+L + KTK +R +L+P W E F+FK+
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 57 E--DLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104
+ D L + + D D+ +DF G L VS + K + W+ L
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL----XKXPASGWYKL 124
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC------NGKSRTSSIKFQQCDPMWNEIFEYDA 592
L V + NL D +G DPYV K +T +I+ +P WNE F +
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 78
Query: 593 M-DEPPSMLDVEVYDFD----GPFNEATSLGHAEI 622
+ L VE++D+D F + S G +E+
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 10/122 (8%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQR--FKTKVVRKSLSPSWEEEFSFK 55
L V+V+ ++ D G SDPYV+L L R+ +TK ++K+L+P W EEF F+
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 56 VEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDAD-NKSLPTAWHS--LQPKNKKSK 112
V L+ V DE++ DDF+G + +P+S + D P + L+P++ KS+
Sbjct: 83 VNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKSR 142
Query: 113 NK 114
K
Sbjct: 143 VK 144
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 12/116 (10%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVE 57
L+V +I ++ AMD NGYSDP+V+L L + + KT++ +K+L+P + EEF + ++
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 58 --DL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKK 110
DL K L ISV D D ++D++G ++ +S A + L + L+ K+KK
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS----AKGERLKHWYECLKNKDKK 128
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN---GK--SRTSSIKFQQCDPMWNEIFEYDAM 593
L V +I+ +LAA+D++G+ DP+V GK + IK + +P +NE F YD
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 594 --DEPPSMLDVEVYDFD 608
D LD+ V+D+D
Sbjct: 77 HSDLAKKSLDISVWDYD 93
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 12/116 (10%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVE 57
L+V +I ++ AMD NGYSDP+V+L L + + KT++ +K+L+P + EEF + ++
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 58 --DL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKK 110
DL K L ISV D D ++D++G ++ +S A + L + L+ K+KK
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS----AKGERLKHWYECLKNKDKK 150
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN---GK--SRTSSIKFQQCDPMWNEIFEYDAM 593
L V +I+ +LAA+D++G+ DP+V GK + IK + +P +NE F YD
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 594 --DEPPSMLDVEVYDFD 608
D LD+ V+D+D
Sbjct: 99 HSDLAKKSLDISVWDYD 115
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 66/105 (62%), Gaps = 12/105 (11%)
Query: 3 LVVRVIEARNIPAMD-QNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSF---- 54
VV + EAR +PAMD Q+ SDPY+++ + + + KT+V+RK+L P+++E F+F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 55 --KVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSL 97
++++L L ++L D++ DD +G + IP+S + ++ K L
Sbjct: 84 YTQIQELA--LHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKML 126
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 18/110 (16%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL--GR------------QRFKTKVVRKSLSPSW 48
L++ +++ARN+ D NGYSDP+V++ L GR + +TK V+KSL+P W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 49 EEEFSFK---VEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADN 94
+ +K +E L K L ++V D D++ ++DF+G + I +S DN
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN 129
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 5 VRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWEEEFSFKVED 58
VRVI + D G SDPYVR+ L +TK ++KSL+P W EE F+V
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83
Query: 59 LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAW----HSLQPKNKKSKNK 114
+ L+ V DE++ DDF+G + +P+ + +N L + L P++ KS+ K
Sbjct: 84 QQHRLLFEVFDENRLTRDDFLGQVDVPLYPL-PTENPRLERPYTFKDFVLHPRSHKSRVK 142
Query: 115 DCGEILLTISF 125
G + L +++
Sbjct: 143 --GYLRLKMTY 151
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVE 57
L+V V +A+N+ MD NG SDPYV+L+L + KTK ++ SL+P W E F F+++
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 58 --DLKDELVISVLDEDKYFNDDFVGFLKIPVSRV 89
D L + + D D +DF+G L +S +
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 12/116 (10%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVE 57
L+V +I ++ A D NGYSDP+V+L L + + KT++ +K+L+P + EEF + ++
Sbjct: 39 LIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 58 --DL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKK 110
DL K L ISV D D ++D++G ++ +S A + L + L+ K+KK
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS----AKGERLKHWYECLKNKDKK 150
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN---GK--SRTSSIKFQQCDPMWNEIFEYDAM 593
L V +I+ +LAA D++G+ DP+V GK + IK + +P +NE F YD
Sbjct: 39 LIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 594 --DEPPSMLDVEVYDFD 608
D LD+ V+D+D
Sbjct: 99 HSDLAKKSLDISVWDYD 115
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 5 VRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVED 58
V+VI + D G SDPYVR+ L +TK ++KSL+P W EE F+V
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71
Query: 59 LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAW----HSLQPKNKKSKNK 114
+ ++ V DE++ DDF+G + +P+ + +N + + L P++ KS+ K
Sbjct: 72 QRHRILFEVFDENRLTRDDFLGQVDVPLYPL-PTENPRMERPYTFKDFVLHPRSHKSRVK 130
Query: 115 DCGEILLTISFSHNTSSADFN 135
G + L +++ S D N
Sbjct: 131 --GYLRLKMTYLPKNGSEDEN 149
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVE 57
L+V V +A+N+ MD NG SDPYV+L+L + KTK ++ SL+P W E F F+++
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 58 --DLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDA 92
D L + + D D +DF+G L +S + A
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFK-- 55
L +I A+ + MD NG +DPYV+L L + +TK +R + +P W E +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 56 -VEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRV 89
ED+ + L ISV DEDK+ +++F+G + + ++
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVF------TCNGKSRTSSIKFQQCDPMWNEIF 588
D L +I+ L +DS+G DPYV + + K RT +++ + +P+WNE
Sbjct: 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR-NPVWNETL 85
Query: 589 EYDAMDEPP---SMLDVEVYDFDGPFNEATSLGHAE 621
+Y + E L + V D D GH E
Sbjct: 86 QYHGITEEDMQRKTLRISVCDED-------KFGHNE 114
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFK-- 55
L +I A+ + MD NG +DPYV+L L + +TK +R + +P W E +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 56 -VEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRV 89
ED+ + L ISV DEDK+ +++F+G + + ++
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVF------TCNGKSRTSSIKFQQCDPMWNEIF 588
D L +I+ L +DS+G DPYV + + K RT +++ + +P+WNE
Sbjct: 25 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR-NPVWNETL 83
Query: 589 EYDAMDE 595
+Y + E
Sbjct: 84 QYHGITE 90
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 17/121 (14%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----RFKTKVVRKSLSPSWEEEFSFKV 56
KL V ++EA+N+ MD G SDPYV++ L + + KT + + +L+P + E FSF+V
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 57 ---EDLKDELVISVLDEDKYFNDD-----FVGFLKIPVSRVFDAD---NKSLPTA-WHSL 104
+ K ++V++VLD DK +D FVG+ +D N P A WH+L
Sbjct: 86 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 145
Query: 105 Q 105
Q
Sbjct: 146 Q 146
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC--NG---KSRTSSIKFQQCDPMWNEIFEYDAM 593
LTV +++ NL +D G DPYV NG K + ++IK +P +NE F ++
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 594 DEPPSMLD--VEVYDFD 608
E + V V D+D
Sbjct: 87 FEQIQKVQVVVTVLDYD 103
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 17/121 (14%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----RFKTKVVRKSLSPSWEEEFSFKV 56
KL V ++EA+N+ MD G SDPYV++ L + + KT + + +L+P + E FSF+V
Sbjct: 19 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 78
Query: 57 ---EDLKDELVISVLDEDKYFNDD-----FVGFLKIPVSRVFDAD---NKSLPTA-WHSL 104
+ K ++V++VLD DK +D FVG+ +D N P A WH+L
Sbjct: 79 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 138
Query: 105 Q 105
Q
Sbjct: 139 Q 139
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC--NG---KSRTSSIKFQQCDPMWNEIFEYDAM 593
LTV +++ NL +D G DPYV NG K + ++IK +P +NE F ++
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 79
Query: 594 DEPPSMLD--VEVYDFD 608
E + V V D+D
Sbjct: 80 FEQIQKVQVVVTVLDYD 96
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 17/121 (14%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----RFKTKVVRKSLSPSWEEEFSFKV 56
KL V ++EA+N+ MD G SDPYV++ L + + KT + + +L+P + E FSF+V
Sbjct: 18 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 77
Query: 57 ---EDLKDELVISVLDEDKYFNDD-----FVGFLKIPVSRVFDAD---NKSLPTA-WHSL 104
+ K ++V++VLD DK +D FVG+ +D N P A WH+L
Sbjct: 78 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 137
Query: 105 Q 105
Q
Sbjct: 138 Q 138
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC--NG---KSRTSSIKFQQCDPMWNEIFEYDAM 593
LTV +++ NL +D G DPYV NG K + ++IK +P +NE F ++
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 78
Query: 594 DEPPSMLD--VEVYDFD 608
E + V V D+D
Sbjct: 79 FEQIQKVQVVVTVLDYD 95
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDLKD 61
L V ++ A+ + D DPYV+L Q K+ V +P W E F F V +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 62 ELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121
EL + D+D DD VG IP+ VF + PTA++ ++ + K GEI +
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEPVF-VEGSIPPTAYNVVKDEEYK------GEIWV 124
Query: 122 TISFSHNTSSA 132
+SF + S+
Sbjct: 125 ALSFKPSGPSS 135
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSI-KFQQCDPMWNEIFEYDAMDEPP 597
L V L+ L D DPYV TC + + S++ + P WNE F + + E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF-TVSEGT 70
Query: 598 SMLDVEVYDFD 608
+ L +++D D
Sbjct: 71 TELKAKIFDKD 81
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 8/86 (9%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFK-----TKVVRKSLSPSWEEEFSFKV- 56
++V +I+ARN+ AMD G SDPYV++ L + + T +++L+P + E F+F +
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 57 -EDLKD-ELVISVLDEDKYFNDDFVG 80
E L++ ++I+V+D+DK +D +G
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIG 103
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSR-----TSSIKFQQCDPMWNEIFEYDAM 593
+ V +IK NL A+D G DPYV K + + K + +P++NE F +D
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 594 DE 595
E
Sbjct: 78 TE 79
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 13/100 (13%)
Query: 3 LVVRVIEARNIPA-MDQNG------YSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEF 52
L VRVIEAR++P + +G +S+PYV++ L + +T V RK+ P +EE +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 53 SFKV---EDLKDELVISVLDEDKYFNDDFVGFLKIPVSRV 89
+F++ E + L+++V+D DK+ +G + +P+ V
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
Length = 131
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 23 DPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFL 82
+ YV L++ + T VR S PSWE++F F++ L L + V ++ + D VG +
Sbjct: 24 NTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTV 81
Query: 83 KIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCG 117
IP+ R N+ P W +L + + ++ CG
Sbjct: 82 WIPL-RTIRQSNEEGPGEWLTLDSQAIMADSEICG 115
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-------GRQRFKTKVVRKSLSPSWEEEFSF 54
KL+V V RN+ A ++G SDPYVR+ L GR+ KT V +K+L+P +++ F F
Sbjct: 25 KLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFDQSFDF 81
Query: 55 KV 56
V
Sbjct: 82 SV 83
>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJS|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 167
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 23 DPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFL 82
+ YV L++ T VR S PSWE++F F++ L L + V ++ + D VG +
Sbjct: 33 NTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTV 90
Query: 83 KIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCG 117
IP+ R N+ P W +L + + ++ CG
Sbjct: 91 WIPL-RTIRQSNEEGPGEWLTLDSQAIMADSEICG 124
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQRF---KTKVVRKSLSPSWEEEFSFKV- 56
L V V++AR++P D +G SDPYV++ L ++R KT V + + + + E F F +
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 57 ----EDLKDELVISVLDEDKYFNDDFVGFL 82
E++ E + VLD ++ ++ +G L
Sbjct: 92 CESLEEISVEFL--VLDSERGSRNEVIGRL 119
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 539 LTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIK--FQQCDP--MWNEIFEYDAM 593
LTV ++K +L D SG DPYV V + K R S K ++C P ++NE+F +D
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 594 DEPPSMLDVEVYDFD---GPFNEA 614
E + VE D G NE
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEV 115
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 539 LTVALIKGDNLAAVD-SSGFCDPYV-VFTCNGKSR----TSSIKFQQCDPMWNEIFEYDA 592
L V + + LA D + +PYV + KSR +SIK +P+++E Y+
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI 84
Query: 593 MDEPPSMLDVEVYDFD----GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA 644
P S+L F G F T LG AEI + D +PL GK++
Sbjct: 85 ---PESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS 137
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 2 KLVVRVIEARNIPAMDQNGYS--DPYVRLQL---GR---QRFKTKVVRKSLSPSWEEEFS 53
+L VR+I + +P +++N S DP V +++ GR R + +P W+ EF
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557
Query: 54 FKVEDLKDELV-ISVLDEDKYFNDDFVGFLKIP 85
F+V LV V D D +DF+G IP
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 590
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 2 KLVVRVIEARNIPAMDQNGYS--DPYVRLQL---GR---QRFKTKVVRKSLSPSWEEEFS 53
+L VR+I + +P +++N S DP V +++ GR R + +P W+ EF
Sbjct: 496 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 555
Query: 54 FKVEDLKDELV-ISVLDEDKYFNDDFVGFLKIP 85
F+V LV V D D +DF+G IP
Sbjct: 556 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 588
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFK--VEDLK 60
LVV A ++ D +D Y+++ G Q F+T VV + +P W ++ F+ +
Sbjct: 396 LVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTG 454
Query: 61 DELVISVLDEDKYFNDDFVG 80
L + V D D ++DD +G
Sbjct: 455 GPLRVQVWDADYGWDDDLLG 474
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSF 54
+L+V ++ A+++P+ + +PYV++ + + +TK V+K+L P W + F +
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSF 54
+L+V ++ A+++P+ + +PYV++ + + +TK V+K+L P W + F +
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
>pdb|2BMM|A Chain A, X-Ray Structure Of A Novel Thermostable Hemoglobin From
The Actinobacterium Thermobifida Fusca
Length = 123
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 279 PRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKADGKVF 338
PRT++E +G+ L++ + + G E R +T+++AA + E+Q + + V+
Sbjct: 57 PRTYSERRGHPRLRMRHFPYRIGAEERDRWLTHMRAAVDDLALPAHLEQQLW---EYLVY 113
Query: 339 AILASVSTPE 348
A A V+ PE
Sbjct: 114 AAYAMVNVPE 123
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQRFKTKVVRKSLSPSWEEEFSFKVED 58
+K+ + V+ A+N+ D DP+ ++ + Q T V+ +L P W + + V
Sbjct: 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK 64
Query: 59 LKDELVISVLDEDKYFNDDFVGFL 82
D + ISV + K GFL
Sbjct: 65 -TDSITISVWNHKKIHKKQGAGFL 87
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 23 DPYVRLQLGRQRF-KTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81
DPY+ L + R +T +K+ SP+W +EF V + + ++ ++V + DDFV
Sbjct: 39 DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVAN 97
Query: 82 LKIPVSRVFDADNKSLPTAWHSLQPKNK 109
I + ++ W L+P+ K
Sbjct: 98 CTIQFEELLQNGSRHFED-WIDLEPEGK 124
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 33.1 bits (74), Expect = 0.70, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL----GRQRF-KTKVVRKSLSPSWEEEFSFKV- 56
L++ +IE + + + Q G DPYV++ L R R KT+ V P++ E F F V
Sbjct: 29 LLLHIIEGKGLIS-KQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ 87
Query: 57 -EDLKDELVISV 67
ED + L+++V
Sbjct: 88 EEDDQKRLLVTV 99
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 23 DPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFV 79
DPYV L + R +T+ ++P W E F F ++ ++ ++ L + Y D+ +
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 102
Query: 80 GFLKIPVSRVFDADNKSLP 98
G VS + + K +P
Sbjct: 103 GTATFTVSSMKVGEKKEVP 121
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 23 DPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFV 79
DPYV L + R +T+ ++P W E F F ++ ++ ++ L + Y D+ +
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 87
Query: 80 GFLKIPVSRVFDADNKSLP 98
G VS + + K +P
Sbjct: 88 GTATFTVSSMKVGEKKEVP 106
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 23 DPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFV 79
DPYV L + R +T+ ++P W E F F ++ ++ ++ L + Y D+ +
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 102
Query: 80 GFLKIPVSRVFDADNKSLP 98
G VS + + K +P
Sbjct: 103 GTATFTVSSMKVGEKKEVP 121
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 245 EVPSNLPGGVLVDQMYVIAPQDLNTLLFSPDSNFPRT----WAEEQGNTELQIG 294
+ P NLP LV +V P N F P FP W G +L++G
Sbjct: 282 DYPVNLPRNKLVYSPHVFGPDVYNQPYFGPAKGFPDNLPDIWYHHFGYVKLELG 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,828,961
Number of Sequences: 62578
Number of extensions: 1001089
Number of successful extensions: 2313
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2192
Number of HSP's gapped (non-prelim): 93
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)