Query 003728
Match_columns 800
No_of_seqs 736 out of 3312
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028 Ca2+-dependent phospho 99.9 1E-21 2.2E-26 218.8 23.4 104 2-108 168-277 (421)
2 cd04016 C2_Tollip C2 domain pr 99.9 2.7E-22 5.9E-27 185.0 15.1 118 537-657 2-121 (121)
3 COG5038 Ca2+-dependent lipid-b 99.9 6.8E-20 1.5E-24 213.0 27.8 123 535-658 1038-1161(1227)
4 cd04016 C2_Tollip C2 domain pr 99.9 1E-20 2.2E-25 174.6 15.9 117 2-125 3-121 (121)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 6.8E-21 1.5E-25 178.5 13.8 117 539-656 1-126 (126)
6 cd08376 C2B_MCTP_PRT C2 domain 99.8 4E-20 8.7E-25 170.7 15.9 115 538-658 1-115 (116)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.3E-20 1.2E-24 171.3 16.1 118 539-658 2-120 (121)
8 cd08682 C2_Rab11-FIP_classI C2 99.8 3.9E-20 8.5E-25 173.4 14.7 120 3-124 1-126 (126)
9 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.4E-20 9.6E-25 177.5 15.4 121 539-660 2-134 (150)
10 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.2E-20 1.3E-24 170.5 14.2 113 539-653 2-125 (126)
11 cd08681 C2_fungal_Inn1p-like C 99.8 4.2E-20 9.1E-25 171.1 12.1 117 537-657 1-118 (118)
12 cd04022 C2A_MCTP_PRT_plant C2 99.8 9.3E-20 2E-24 171.1 13.5 119 539-658 2-126 (127)
13 cd04036 C2_cPLA2 C2 domain pre 99.8 1.9E-19 4.1E-24 167.0 13.9 115 538-658 1-118 (119)
14 cd04024 C2A_Synaptotagmin-like 99.8 2.4E-19 5.2E-24 168.5 14.1 120 537-657 1-128 (128)
15 cd04022 C2A_MCTP_PRT_plant C2 99.8 3E-19 6.5E-24 167.6 14.7 121 2-126 1-126 (127)
16 cd04019 C2C_MCTP_PRT_plant C2 99.8 6.3E-19 1.4E-23 169.6 16.7 126 3-128 2-134 (150)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.2E-19 1.1E-23 164.6 15.7 120 2-127 1-121 (121)
18 cd08395 C2C_Munc13 C2 domain t 99.8 2.8E-19 6E-24 164.7 13.6 102 539-642 2-113 (120)
19 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3.1E-19 6.8E-24 166.0 14.1 115 537-657 1-121 (121)
20 cd08375 C2_Intersectin C2 doma 99.8 6.3E-19 1.4E-23 167.0 15.6 118 535-657 13-135 (136)
21 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.9E-19 8.5E-24 165.1 13.8 117 539-657 2-121 (121)
22 KOG1030 Predicted Ca2+-depende 99.8 1E-19 2.3E-24 171.0 9.9 95 535-631 4-98 (168)
23 cd08379 C2D_MCTP_PRT_plant C2 99.8 8.3E-19 1.8E-23 162.9 14.3 115 3-121 2-125 (126)
24 cd08678 C2_C21orf25-like C2 do 99.8 1.1E-18 2.3E-23 163.7 14.7 118 539-660 1-122 (126)
25 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.3E-19 2E-23 163.4 14.3 116 539-655 2-122 (123)
26 cd04024 C2A_Synaptotagmin-like 99.8 1.6E-18 3.5E-23 162.9 15.4 124 2-125 2-128 (128)
27 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.1E-18 4.5E-23 160.2 15.1 118 3-125 2-121 (121)
28 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.2E-18 2.5E-23 161.9 13.2 113 539-657 2-119 (121)
29 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.9E-18 4.2E-23 160.4 14.0 116 3-126 2-120 (121)
30 cd08400 C2_Ras_p21A1 C2 domain 99.8 3.5E-18 7.5E-23 160.0 15.8 116 538-658 5-123 (126)
31 cd04015 C2_plant_PLD C2 domain 99.8 3.6E-18 7.9E-23 166.0 16.1 119 537-658 7-158 (158)
32 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 3.7E-18 8E-23 158.8 14.5 116 539-656 2-120 (121)
33 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 3.8E-18 8.3E-23 161.5 14.8 122 2-125 1-132 (133)
34 cd08681 C2_fungal_Inn1p-like C 99.8 2.7E-18 5.8E-23 159.0 13.4 115 2-125 2-118 (118)
35 cd04010 C2B_RasA3 C2 domain se 99.8 1.8E-18 4E-23 165.4 12.2 114 539-655 2-147 (148)
36 cd08381 C2B_PI3K_class_II C2 d 99.8 2E-18 4.3E-23 160.6 11.8 102 536-639 12-121 (122)
37 cd04043 C2_Munc13_fungal C2 do 99.8 5.5E-18 1.2E-22 158.8 14.9 118 538-662 2-125 (126)
38 cd04017 C2D_Ferlin C2 domain f 99.8 8.4E-18 1.8E-22 159.5 16.1 122 2-128 2-134 (135)
39 cd08377 C2C_MCTP_PRT C2 domain 99.8 7.7E-18 1.7E-22 156.2 15.3 117 537-657 1-118 (119)
40 cd08376 C2B_MCTP_PRT C2 domain 99.8 8.6E-18 1.9E-22 155.1 15.5 113 3-126 2-115 (116)
41 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.2E-18 9E-23 161.3 13.7 118 538-657 1-132 (133)
42 cd08677 C2A_Synaptotagmin-13 C 99.8 2.2E-18 4.8E-23 156.5 10.7 102 534-639 11-118 (118)
43 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 8.9E-18 1.9E-22 156.7 15.2 119 2-123 1-122 (123)
44 cd08678 C2_C21orf25-like C2 do 99.8 1.1E-17 2.4E-22 156.8 15.8 120 3-128 1-122 (126)
45 cd04014 C2_PKC_epsilon C2 doma 99.8 1E-17 2.2E-22 158.3 15.7 115 536-659 3-130 (132)
46 cd04050 C2B_Synaptotagmin-like 99.8 3.5E-18 7.6E-23 154.8 12.0 101 538-642 1-103 (105)
47 cd08375 C2_Intersectin C2 doma 99.8 1.2E-17 2.6E-22 158.2 16.0 117 2-125 16-135 (136)
48 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.2E-17 4.7E-22 153.1 16.2 117 2-125 2-118 (119)
49 cd04028 C2B_RIM1alpha C2 domai 99.8 8.3E-18 1.8E-22 160.0 13.4 107 536-644 28-141 (146)
50 KOG1030 Predicted Ca2+-depende 99.7 5.1E-18 1.1E-22 159.7 10.9 91 2-92 7-97 (168)
51 cd04010 C2B_RasA3 C2 domain se 99.7 7.8E-18 1.7E-22 161.1 12.5 118 2-123 1-147 (148)
52 cd04046 C2_Calpain C2 domain p 99.7 3.3E-17 7.2E-22 153.5 16.4 119 3-127 5-123 (126)
53 cd04027 C2B_Munc13 C2 domain s 99.7 1.5E-17 3.2E-22 156.0 13.8 115 538-655 2-127 (127)
54 cd04046 C2_Calpain C2 domain p 99.7 3.3E-17 7.2E-22 153.5 16.0 118 536-658 2-122 (126)
55 cd04017 C2D_Ferlin C2 domain f 99.7 2.5E-17 5.3E-22 156.3 15.0 118 538-658 2-132 (135)
56 cd04029 C2A_SLP-4_5 C2 domain 99.7 1E-17 2.2E-22 156.6 11.8 107 533-640 11-125 (125)
57 cd04027 C2B_Munc13 C2 domain s 99.7 2.9E-17 6.3E-22 154.1 14.9 115 2-123 2-127 (127)
58 cd08400 C2_Ras_p21A1 C2 domain 99.7 5.8E-17 1.3E-21 151.7 16.7 118 2-127 5-124 (126)
59 cd08688 C2_KIAA0528-like C2 do 99.7 9.7E-18 2.1E-22 153.2 11.0 101 539-640 1-108 (110)
60 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 4.4E-17 9.5E-22 151.5 15.6 118 3-124 2-120 (121)
61 cd08373 C2A_Ferlin C2 domain f 99.7 3.6E-17 7.7E-22 153.6 15.0 117 543-662 2-120 (127)
62 cd08394 C2A_Munc13 C2 domain f 99.7 2.4E-17 5.2E-22 151.2 13.2 101 2-108 3-103 (127)
63 KOG2059 Ras GTPase-activating 99.7 2.9E-17 6.4E-22 181.8 16.3 118 2-125 6-124 (800)
64 cd08382 C2_Smurf-like C2 domai 99.7 3.1E-17 6.7E-22 153.0 14.1 119 2-123 1-122 (123)
65 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.3E-17 2.7E-22 156.0 11.4 105 535-640 13-125 (125)
66 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.6E-17 3.5E-22 155.2 12.0 107 533-640 12-123 (124)
67 cd04039 C2_PSD C2 domain prese 99.7 1.9E-17 4.1E-22 150.3 11.8 94 537-631 1-99 (108)
68 cd08381 C2B_PI3K_class_II C2 d 99.7 2.3E-17 5.1E-22 153.4 12.5 99 2-104 14-121 (122)
69 cd04041 C2A_fungal C2 domain f 99.7 1.1E-17 2.4E-22 153.0 10.1 100 537-640 1-107 (111)
70 cd08395 C2C_Munc13 C2 domain t 99.7 3.1E-17 6.8E-22 151.1 12.7 104 2-109 1-115 (120)
71 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.5E-17 5.4E-22 153.9 12.3 106 534-640 13-123 (124)
72 cd04015 C2_plant_PLD C2 domain 99.7 9.3E-17 2E-21 156.1 16.6 119 2-125 8-157 (158)
73 cd04036 C2_cPLA2 C2 domain pre 99.7 5.1E-17 1.1E-21 150.7 14.0 113 3-126 2-118 (119)
74 cd08382 C2_Smurf-like C2 domai 99.7 3.3E-17 7E-22 152.9 12.6 114 539-655 2-122 (123)
75 cd04040 C2D_Tricalbin-like C2 99.7 5.5E-17 1.2E-21 149.5 13.3 113 539-653 1-114 (115)
76 cd08392 C2A_SLP-3 C2 domain fi 99.7 3.8E-17 8.3E-22 153.0 12.1 104 2-105 16-128 (128)
77 cd04028 C2B_RIM1alpha C2 domai 99.7 5.7E-17 1.2E-21 154.2 13.4 104 2-108 30-140 (146)
78 cd04044 C2A_Tricalbin-like C2 99.7 7.5E-17 1.6E-21 150.6 13.4 118 537-658 2-123 (124)
79 cd04050 C2B_Synaptotagmin-like 99.7 6.4E-17 1.4E-21 146.5 12.5 102 3-108 2-104 (105)
80 cd08688 C2_KIAA0528-like C2 do 99.7 6.3E-17 1.4E-21 147.8 12.4 104 3-106 1-109 (110)
81 cd04031 C2A_RIM1alpha C2 domai 99.7 5E-17 1.1E-21 152.1 12.0 105 534-640 13-125 (125)
82 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.9E-17 1.1E-21 152.3 11.8 106 534-640 12-128 (128)
83 cd08677 C2A_Synaptotagmin-13 C 99.7 5E-17 1.1E-21 147.7 11.5 97 2-104 15-118 (118)
84 cd08386 C2A_Synaptotagmin-7 C2 99.7 9.6E-17 2.1E-21 150.2 13.1 107 533-640 12-124 (125)
85 cd08394 C2A_Munc13 C2 domain f 99.7 1.1E-16 2.4E-21 146.9 12.8 99 537-642 2-102 (127)
86 cd04030 C2C_KIAA1228 C2 domain 99.7 9.3E-17 2E-21 150.7 12.7 107 533-640 12-127 (127)
87 cd04018 C2C_Ferlin C2 domain t 99.7 9.3E-17 2E-21 153.9 12.5 103 539-642 2-126 (151)
88 cd08388 C2A_Synaptotagmin-4-11 99.7 1.1E-16 2.4E-21 150.2 12.7 107 533-640 12-127 (128)
89 cd08685 C2_RGS-like C2 domain 99.7 6.3E-17 1.4E-21 149.7 10.7 103 535-639 10-119 (119)
90 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.7E-16 5.8E-21 146.2 14.3 113 2-125 2-121 (121)
91 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.2E-16 2.6E-21 149.5 11.9 101 2-105 16-125 (125)
92 cd04011 C2B_Ferlin C2 domain s 99.7 1.2E-16 2.7E-21 146.2 11.7 101 536-641 3-110 (111)
93 cd04049 C2_putative_Elicitor-r 99.7 1.5E-16 3.2E-21 148.7 12.2 105 537-642 1-109 (124)
94 cd08390 C2A_Synaptotagmin-15-1 99.7 2E-16 4.4E-21 147.5 12.9 107 533-640 10-122 (123)
95 cd04051 C2_SRC2_like C2 domain 99.7 9.4E-17 2E-21 150.3 10.5 113 539-653 2-125 (125)
96 cd04018 C2C_Ferlin C2 domain t 99.7 2.2E-16 4.8E-21 151.3 12.7 107 2-108 1-127 (151)
97 cd04043 C2_Munc13_fungal C2 do 99.7 8.6E-16 1.9E-20 144.0 16.4 118 2-128 2-123 (126)
98 cd08373 C2A_Ferlin C2 domain f 99.7 6.3E-16 1.4E-20 145.1 15.5 116 7-130 2-120 (127)
99 cd04044 C2A_Tricalbin-like C2 99.7 3.9E-16 8.5E-21 145.7 13.8 119 2-127 3-124 (124)
100 cd08521 C2A_SLP C2 domain firs 99.7 1.8E-16 3.9E-21 147.9 11.4 105 534-639 11-123 (123)
101 cd04045 C2C_Tricalbin-like C2 99.7 2.7E-16 5.9E-21 145.8 12.4 103 537-642 1-104 (120)
102 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.3E-16 7.2E-21 146.3 12.7 101 2-105 16-125 (125)
103 KOG1032 Uncharacterized conser 99.7 4.4E-17 9.5E-22 186.5 8.1 351 443-794 3-355 (590)
104 cd08680 C2_Kibra C2 domain fou 99.7 2.1E-16 4.6E-21 146.8 11.1 106 533-639 10-124 (124)
105 cd04051 C2_SRC2_like C2 domain 99.7 2.4E-16 5.3E-21 147.5 11.6 116 2-121 1-125 (125)
106 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.7E-16 5.9E-21 153.4 12.3 106 535-641 25-138 (162)
107 cd08690 C2_Freud-1 C2 domain f 99.7 8E-16 1.7E-20 147.4 15.1 119 539-659 4-138 (155)
108 cd04038 C2_ArfGAP C2 domain pr 99.7 3.1E-16 6.7E-21 149.7 12.3 92 537-631 2-93 (145)
109 cd08676 C2A_Munc13-like C2 dom 99.7 2.8E-16 6E-21 150.9 11.8 100 534-639 25-153 (153)
110 cd04014 C2_PKC_epsilon C2 doma 99.7 1.4E-15 3.1E-20 143.7 16.3 115 2-127 5-130 (132)
111 cd04011 C2B_Ferlin C2 domain s 99.7 4.2E-16 9.2E-21 142.6 12.2 101 2-106 5-110 (111)
112 KOG0696 Serine/threonine prote 99.7 2.4E-17 5.1E-22 172.9 3.8 121 518-640 154-287 (683)
113 cd08685 C2_RGS-like C2 domain 99.7 4.2E-16 9.1E-21 144.2 11.4 100 1-104 12-119 (119)
114 cd08675 C2B_RasGAP C2 domain s 99.7 4.1E-16 8.9E-21 148.0 11.5 103 539-643 1-122 (137)
115 cd08389 C2A_Synaptotagmin-14_1 99.7 5.6E-16 1.2E-20 144.6 12.2 107 533-641 12-124 (124)
116 cd04031 C2A_RIM1alpha C2 domai 99.7 7.1E-16 1.5E-20 144.3 12.5 101 1-105 16-125 (125)
117 cd04032 C2_Perforin C2 domain 99.7 5E-16 1.1E-20 144.6 11.2 93 534-628 25-118 (127)
118 cd08691 C2_NEDL1-like C2 domai 99.7 2.2E-15 4.7E-20 142.3 15.6 118 2-123 2-136 (137)
119 cd04041 C2A_fungal C2 domain f 99.7 5.4E-16 1.2E-20 141.9 11.1 99 2-106 2-108 (111)
120 cd08387 C2A_Synaptotagmin-8 C2 99.7 9.2E-16 2E-20 143.3 12.6 101 2-105 17-123 (124)
121 cd08680 C2_Kibra C2 domain fou 99.7 7E-16 1.5E-20 143.3 11.5 101 2-104 15-124 (124)
122 KOG1032 Uncharacterized conser 99.6 7.1E-16 1.5E-20 176.6 13.6 154 254-415 279-435 (590)
123 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.4E-15 3E-20 142.1 13.2 101 2-105 17-123 (124)
124 cd08383 C2A_RasGAP C2 domain ( 99.6 1.5E-15 3.3E-20 140.3 13.2 112 539-657 2-117 (117)
125 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.4E-15 3.1E-20 142.3 13.2 103 1-106 16-125 (125)
126 cd08388 C2A_Synaptotagmin-4-11 99.6 1.4E-15 3E-20 142.8 13.0 104 2-106 17-128 (128)
127 cd04039 C2_PSD C2 domain prese 99.6 1.4E-15 3E-20 138.2 12.5 91 2-92 2-98 (108)
128 cd08691 C2_NEDL1-like C2 domai 99.6 2.5E-15 5.4E-20 141.9 14.2 114 538-655 2-136 (137)
129 cd04021 C2_E3_ubiquitin_ligase 99.6 2.1E-15 4.6E-20 141.0 13.5 114 538-655 3-124 (125)
130 cd04037 C2E_Ferlin C2 domain f 99.6 1.3E-15 2.8E-20 142.2 11.7 91 538-629 1-93 (124)
131 cd04030 C2C_KIAA1228 C2 domain 99.6 2.3E-15 5E-20 141.2 12.9 101 2-105 17-127 (127)
132 cd04013 C2_SynGAP_like C2 doma 99.6 4E-15 8.8E-20 141.1 14.4 117 537-659 11-140 (146)
133 cd08389 C2A_Synaptotagmin-14_1 99.6 2.2E-15 4.7E-20 140.7 12.4 102 1-106 16-124 (124)
134 cd04013 C2_SynGAP_like C2 doma 99.6 5.7E-15 1.2E-19 140.1 15.3 119 2-128 12-141 (146)
135 cd08384 C2B_Rabphilin_Doc2 C2 99.6 4.6E-16 1E-20 147.3 7.8 107 532-641 8-121 (133)
136 cd04052 C2B_Tricalbin-like C2 99.6 2.4E-15 5.2E-20 137.6 11.2 99 554-658 9-109 (111)
137 cd04049 C2_putative_Elicitor-r 99.6 4.2E-15 9.2E-20 138.9 12.9 104 2-108 2-110 (124)
138 cd08521 C2A_SLP C2 domain firs 99.6 4.9E-15 1.1E-19 138.1 12.6 100 2-104 15-123 (123)
139 cd04048 C2A_Copine C2 domain f 99.6 2.5E-15 5.4E-20 139.6 10.4 98 543-640 6-113 (120)
140 cd00275 C2_PLC_like C2 domain 99.6 9.9E-15 2.1E-19 137.0 14.5 115 538-657 3-127 (128)
141 cd04021 C2_E3_ubiquitin_ligase 99.6 1.4E-14 3E-19 135.5 15.0 119 2-123 3-124 (125)
142 cd08406 C2B_Synaptotagmin-12 C 99.6 2.8E-15 6E-20 141.7 10.3 103 535-640 13-122 (136)
143 cd08383 C2A_RasGAP C2 domain ( 99.6 9.9E-15 2.1E-19 134.8 13.8 112 3-125 2-117 (117)
144 cd04045 C2C_Tricalbin-like C2 99.6 7.4E-15 1.6E-19 136.2 12.9 103 2-108 2-105 (120)
145 cd04026 C2_PKC_alpha_gamma C2 99.6 5.3E-15 1.1E-19 139.6 11.8 106 535-642 11-122 (131)
146 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.2E-15 2.7E-20 144.9 7.5 105 535-642 13-124 (136)
147 cd04009 C2B_Munc13-like C2 dom 99.6 4.9E-15 1.1E-19 140.2 11.4 96 1-96 16-123 (133)
148 cd08675 C2B_RasGAP C2 domain s 99.6 5.9E-15 1.3E-19 140.1 11.8 102 3-108 1-122 (137)
149 cd04009 C2B_Munc13-like C2 dom 99.6 4.9E-15 1.1E-19 140.2 11.0 92 536-628 15-117 (133)
150 cd08390 C2A_Synaptotagmin-15-1 99.6 9.6E-15 2.1E-19 136.2 12.8 102 2-106 15-123 (123)
151 cd04038 C2_ArfGAP C2 domain pr 99.6 8.9E-15 1.9E-19 139.7 12.5 89 2-91 3-91 (145)
152 cd08690 C2_Freud-1 C2 domain f 99.6 2.2E-14 4.7E-19 137.6 15.1 117 3-126 4-137 (155)
153 KOG0696 Serine/threonine prote 99.6 4.8E-16 1E-20 163.2 4.0 103 2-108 181-290 (683)
154 cd08407 C2B_Synaptotagmin-13 C 99.6 4.7E-15 1E-19 140.1 9.9 102 535-639 13-123 (138)
155 cd04040 C2D_Tricalbin-like C2 99.6 1.7E-14 3.7E-19 132.9 13.2 112 3-121 1-114 (115)
156 PLN03008 Phospholipase D delta 99.6 1.1E-14 2.5E-19 168.0 14.2 121 537-660 14-179 (868)
157 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.3E-15 4.9E-20 143.1 7.1 106 534-642 12-124 (136)
158 cd00275 C2_PLC_like C2 domain 99.6 3.3E-14 7.2E-19 133.5 15.0 116 1-125 2-127 (128)
159 cd08406 C2B_Synaptotagmin-12 C 99.6 1.1E-14 2.4E-19 137.7 11.6 87 2-88 16-110 (136)
160 cd08402 C2B_Synaptotagmin-1 C2 99.6 9.3E-15 2E-19 138.9 11.0 106 533-641 11-123 (136)
161 cd04032 C2_Perforin C2 domain 99.6 1.1E-14 2.3E-19 135.7 11.0 88 2-90 29-118 (127)
162 cd08676 C2A_Munc13-like C2 dom 99.6 1.3E-14 2.9E-19 139.3 11.5 96 1-104 28-153 (153)
163 cd04035 C2A_Rabphilin_Doc2 C2 99.6 2E-14 4.4E-19 134.0 12.5 106 532-639 10-123 (123)
164 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.2E-14 2.6E-19 141.9 11.4 102 2-106 28-138 (162)
165 cd08410 C2B_Synaptotagmin-17 C 99.6 1.1E-14 2.3E-19 138.1 10.6 107 534-642 11-124 (135)
166 cd04037 C2E_Ferlin C2 domain f 99.6 1.9E-14 4.1E-19 134.4 11.1 115 3-126 2-119 (124)
167 cd08403 C2B_Synaptotagmin-3-5- 99.6 4.3E-15 9.3E-20 140.8 6.8 105 534-641 11-122 (134)
168 cd08407 C2B_Synaptotagmin-13 C 99.6 3.1E-14 6.8E-19 134.5 12.0 87 2-88 16-112 (138)
169 cd08404 C2B_Synaptotagmin-4 C2 99.5 3.9E-14 8.4E-19 134.6 12.5 103 1-108 15-125 (136)
170 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.6E-14 5.6E-19 135.3 11.2 102 2-108 14-123 (133)
171 cd08402 C2B_Synaptotagmin-1 C2 99.5 3E-14 6.4E-19 135.4 11.2 89 1-89 15-111 (136)
172 cd00276 C2B_Synaptotagmin C2 d 99.5 8.4E-15 1.8E-19 138.7 7.1 105 535-642 12-123 (134)
173 cd08686 C2_ABR C2 domain in th 99.5 7.7E-14 1.7E-18 126.5 12.7 93 539-639 1-107 (118)
174 PLN03200 cellulose synthase-in 99.5 1.9E-14 4.1E-19 180.8 11.9 119 535-659 1978-2101(2102)
175 cd08692 C2B_Tac2-N C2 domain s 99.5 2.2E-14 4.7E-19 133.7 9.3 105 533-639 10-121 (135)
176 cd08408 C2B_Synaptotagmin-14_1 99.5 5E-14 1.1E-18 133.8 11.7 101 2-106 16-125 (138)
177 cd04026 C2_PKC_alpha_gamma C2 99.5 5.4E-14 1.2E-18 132.7 11.8 102 2-107 14-122 (131)
178 cd08408 C2B_Synaptotagmin-14_1 99.5 4.6E-14 1E-18 134.0 11.0 106 533-640 11-124 (138)
179 PLN03008 Phospholipase D delta 99.5 8.6E-14 1.9E-18 160.9 14.9 107 20-131 75-182 (868)
180 cd08405 C2B_Synaptotagmin-7 C2 99.5 8.1E-14 1.8E-18 132.4 12.3 89 1-89 15-111 (136)
181 cd04052 C2B_Tricalbin-like C2 99.5 1E-13 2.2E-18 126.9 12.3 100 18-127 9-110 (111)
182 cd08409 C2B_Synaptotagmin-15 C 99.5 1.6E-14 3.5E-19 137.2 6.2 104 535-640 13-123 (137)
183 cd08692 C2B_Tac2-N C2 domain s 99.5 1.3E-13 2.9E-18 128.4 11.6 88 2-89 15-110 (135)
184 cd04048 C2A_Copine C2 domain f 99.5 1.5E-13 3.3E-18 127.6 11.8 98 6-106 5-114 (120)
185 KOG1011 Neurotransmitter relea 99.5 3.2E-14 7E-19 154.9 8.1 120 536-658 294-424 (1283)
186 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.7E-13 3.8E-18 129.8 12.2 102 1-107 14-123 (134)
187 cd08410 C2B_Synaptotagmin-17 C 99.5 1.6E-13 3.4E-18 130.2 11.8 103 2-108 15-125 (135)
188 cd04047 C2B_Copine C2 domain s 99.5 2.4E-13 5.2E-18 124.2 10.9 88 541-630 4-101 (110)
189 PF02893 GRAM: GRAM domain; I 99.5 3.5E-14 7.5E-19 118.0 4.8 67 690-756 1-69 (69)
190 KOG1028 Ca2+-dependent phospho 99.5 2.8E-13 6E-18 151.3 13.6 125 537-662 167-298 (421)
191 KOG1011 Neurotransmitter relea 99.5 8.4E-14 1.8E-18 151.8 9.0 122 2-130 296-428 (1283)
192 cd08409 C2B_Synaptotagmin-15 C 99.5 3.3E-13 7.2E-18 128.2 12.0 87 2-89 16-110 (137)
193 cd00276 C2B_Synaptotagmin C2 d 99.5 8.1E-14 1.8E-18 131.9 7.4 102 2-108 15-124 (134)
194 cd04035 C2A_Rabphilin_Doc2 C2 99.4 7.1E-13 1.5E-17 123.6 12.2 90 2-92 16-114 (123)
195 cd08686 C2_ABR C2 domain in th 99.4 5.8E-13 1.3E-17 120.8 10.5 80 3-88 1-92 (118)
196 PF00168 C2: C2 domain; Inter 99.4 7.8E-13 1.7E-17 114.1 10.3 82 539-621 1-85 (85)
197 KOG1326 Membrane-associated pr 99.4 3.1E-14 6.8E-19 163.3 0.8 89 537-626 613-703 (1105)
198 cd04047 C2B_Copine C2 domain s 99.4 1.6E-12 3.4E-17 118.7 9.3 87 4-91 3-100 (110)
199 PLN03200 cellulose synthase-in 99.4 1.7E-12 3.7E-17 163.5 11.3 115 2-127 1981-2101(2102)
200 PF00168 C2: C2 domain; Inter 99.3 5.4E-12 1.2E-16 108.8 9.8 81 3-83 1-85 (85)
201 smart00568 GRAM domain in gluc 99.3 1.8E-12 3.8E-17 105.0 5.9 59 698-756 2-61 (61)
202 KOG2059 Ras GTPase-activating 99.3 4.3E-12 9.2E-17 141.4 8.8 118 539-659 7-126 (800)
203 cd00030 C2 C2 domain. The C2 d 99.3 1.7E-11 3.8E-16 108.1 11.0 100 539-639 1-102 (102)
204 PLN02223 phosphoinositide phos 99.2 6.3E-11 1.4E-15 132.5 14.4 117 537-657 409-536 (537)
205 smart00239 C2 Protein kinase C 99.2 7.4E-11 1.6E-15 104.5 10.7 94 539-633 2-98 (101)
206 cd00030 C2 C2 domain. The C2 d 99.2 2E-10 4.3E-15 101.3 11.5 100 3-104 1-102 (102)
207 cd08374 C2F_Ferlin C2 domain s 99.2 1.5E-10 3.2E-15 108.0 10.1 92 539-631 2-125 (133)
208 PLN02223 phosphoinositide phos 99.2 4.6E-10 9.9E-15 125.7 15.3 116 2-125 410-536 (537)
209 smart00239 C2 Protein kinase C 99.1 4.6E-10 1E-14 99.3 11.3 90 2-91 1-94 (101)
210 PLN02270 phospholipase D alpha 99.1 4E-10 8.7E-15 131.0 13.7 121 537-660 8-150 (808)
211 PLN02952 phosphoinositide phos 99.1 4.8E-10 1E-14 128.2 13.9 117 537-657 470-598 (599)
212 KOG1328 Synaptic vesicle prote 99.1 2.3E-11 4.9E-16 135.1 1.8 96 532-628 942-1048(1103)
213 cd08374 C2F_Ferlin C2 domain s 99.1 5.8E-10 1.3E-14 104.1 10.6 90 2-91 1-123 (133)
214 PLN02952 phosphoinositide phos 99.1 1.8E-09 3.9E-14 123.6 15.4 116 2-125 471-598 (599)
215 PLN02230 phosphoinositide phos 99.1 1E-09 2.2E-14 125.4 12.7 117 537-657 469-597 (598)
216 KOG0169 Phosphoinositide-speci 99.0 1.1E-09 2.4E-14 124.7 11.3 117 538-658 617-744 (746)
217 PLN02230 phosphoinositide phos 99.0 3.7E-09 8E-14 120.8 14.2 116 2-125 470-597 (598)
218 PLN02222 phosphoinositide phos 99.0 4.6E-09 1E-13 119.8 13.7 117 537-657 452-580 (581)
219 PLN02270 phospholipase D alpha 99.0 7.8E-09 1.7E-13 120.4 15.0 124 2-130 9-152 (808)
220 PLN02222 phosphoinositide phos 98.9 9.8E-09 2.1E-13 117.2 15.2 116 2-125 453-580 (581)
221 PLN02228 Phosphoinositide phos 98.9 7E-09 1.5E-13 118.1 13.5 119 537-659 431-562 (567)
222 PLN02228 Phosphoinositide phos 98.9 1.2E-08 2.6E-13 116.2 15.0 118 2-127 432-562 (567)
223 KOG0169 Phosphoinositide-speci 98.9 5.5E-09 1.2E-13 119.1 11.9 117 2-126 617-744 (746)
224 COG5038 Ca2+-dependent lipid-b 98.9 4.3E-09 9.3E-14 124.2 10.8 95 536-632 435-532 (1227)
225 KOG1328 Synaptic vesicle prote 98.9 5.7E-10 1.2E-14 124.2 1.7 119 4-128 117-303 (1103)
226 cd08689 C2_fungal_Pkc1p C2 dom 98.9 7.8E-09 1.7E-13 90.6 8.2 83 539-628 1-87 (109)
227 KOG1264 Phospholipase C [Lipid 98.9 1.2E-08 2.6E-13 115.1 11.3 157 536-697 1064-1235(1267)
228 KOG1264 Phospholipase C [Lipid 98.8 1.3E-08 2.9E-13 114.7 11.3 119 1-128 1065-1191(1267)
229 KOG1031 Predicted Ca2+-depende 98.8 5.5E-09 1.2E-13 113.6 7.8 124 537-662 3-140 (1169)
230 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.3E-08 2.9E-13 89.2 8.7 84 3-91 1-88 (109)
231 KOG1031 Predicted Ca2+-depende 98.8 1.6E-08 3.5E-13 110.0 8.2 122 2-127 4-137 (1169)
232 PLN02352 phospholipase D epsil 98.5 5.7E-07 1.2E-11 104.9 12.4 116 536-660 9-132 (758)
233 KOG1013 Synaptic vesicle prote 98.4 5.9E-08 1.3E-12 100.5 1.2 157 2-166 94-262 (362)
234 PLN02352 phospholipase D epsil 98.3 6.9E-06 1.5E-10 96.1 13.5 118 2-131 11-135 (758)
235 KOG1326 Membrane-associated pr 98.1 1.7E-06 3.6E-11 100.9 3.4 86 3-88 615-703 (1105)
236 PLN02964 phosphatidylserine de 97.9 1.1E-05 2.5E-10 93.7 6.0 94 532-633 49-143 (644)
237 KOG1327 Copine [Signal transdu 97.9 3.2E-05 7E-10 86.5 8.2 185 549-738 2-220 (529)
238 KOG0905 Phosphoinositide 3-kin 97.9 1.4E-05 3E-10 94.4 5.3 103 2-107 1525-1636(1639)
239 KOG0905 Phosphoinositide 3-kin 97.8 1.1E-05 2.4E-10 95.1 4.2 105 535-640 1522-1634(1639)
240 KOG1013 Synaptic vesicle prote 97.8 3E-05 6.5E-10 80.8 5.4 85 2-86 234-326 (362)
241 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00014 2.9E-09 66.2 5.1 100 3-104 1-143 (143)
242 KOG4347 GTPase-activating prot 97.4 4.9E-05 1.1E-09 85.8 1.1 87 684-776 5-94 (671)
243 KOG1327 Copine [Signal transdu 97.4 0.00027 5.8E-09 79.4 6.1 86 542-629 141-236 (529)
244 cd08683 C2_C2cd3 C2 domain fou 97.2 0.00045 9.8E-09 62.9 4.4 101 539-639 1-143 (143)
245 PLN02964 phosphatidylserine de 97.2 0.00051 1.1E-08 80.2 5.9 83 3-92 56-140 (644)
246 KOG2060 Rab3 effector RIM1 and 97.1 0.00035 7.5E-09 74.2 3.5 105 2-108 270-381 (405)
247 KOG2060 Rab3 effector RIM1 and 97.0 0.00055 1.2E-08 72.8 3.6 105 537-643 269-381 (405)
248 KOG3837 Uncharacterized conser 96.9 0.00097 2.1E-08 71.4 4.5 125 537-662 367-507 (523)
249 KOG3837 Uncharacterized conser 96.7 0.0015 3.2E-08 70.1 4.0 117 3-126 369-503 (523)
250 PF15627 CEP76-C2: CEP76 C2 do 96.5 0.019 4.2E-07 54.9 9.8 121 537-658 9-150 (156)
251 cd08684 C2A_Tac2-N C2 domain f 96.4 0.0029 6.3E-08 53.6 3.2 94 540-638 2-102 (103)
252 cd08684 C2A_Tac2-N C2 domain f 96.2 0.0054 1.2E-07 52.0 3.9 85 4-91 2-94 (103)
253 KOG1265 Phospholipase C [Lipid 96.2 0.011 2.4E-07 68.9 7.6 111 2-128 704-825 (1189)
254 KOG1265 Phospholipase C [Lipid 95.9 0.039 8.4E-07 64.7 10.0 130 515-657 679-822 (1189)
255 PF12416 DUF3668: Cep120 prote 95.8 0.12 2.7E-06 56.2 13.3 121 3-128 2-134 (340)
256 PF15627 CEP76-C2: CEP76 C2 do 95.7 0.15 3.3E-06 48.8 11.8 125 3-129 11-153 (156)
257 PF12416 DUF3668: Cep120 prote 95.5 0.17 3.7E-06 55.1 12.9 120 539-661 2-135 (340)
258 cd08398 C2_PI3K_class_I_alpha 95.4 0.13 2.8E-06 49.9 10.2 83 539-626 10-105 (158)
259 cd08693 C2_PI3K_class_I_beta_d 95.3 0.13 2.7E-06 50.9 10.2 85 539-626 10-119 (173)
260 cd08398 C2_PI3K_class_I_alpha 95.2 0.29 6.2E-06 47.5 12.0 84 2-89 9-106 (158)
261 cd08693 C2_PI3K_class_I_beta_d 94.9 0.13 2.9E-06 50.7 8.8 85 2-88 9-119 (173)
262 cd08380 C2_PI3K_like C2 domain 94.4 0.29 6.3E-06 47.4 9.9 87 539-627 10-107 (156)
263 cd08397 C2_PI3K_class_III C2 d 94.0 0.53 1.2E-05 45.8 10.7 71 555-626 27-106 (159)
264 PF11605 Vps36_ESCRT-II: Vacuo 93.6 0.23 5E-06 43.1 6.7 55 717-773 34-89 (89)
265 cd08380 C2_PI3K_like C2 domain 93.6 0.35 7.5E-06 46.9 8.8 87 2-89 9-107 (156)
266 cd04012 C2A_PI3K_class_II C2 d 93.6 0.99 2.1E-05 44.5 12.1 88 538-626 9-118 (171)
267 PF10358 NT-C2: N-terminal C2 93.6 1.9 4E-05 40.9 13.7 119 536-661 6-138 (143)
268 KOG1452 Predicted Rho GTPase-a 93.5 0.14 3.1E-06 53.4 5.9 117 534-658 48-167 (442)
269 PF10358 NT-C2: N-terminal C2 93.4 3.2 6.9E-05 39.3 14.9 117 2-128 8-137 (143)
270 cd08687 C2_PKN-like C2 domain 92.3 1.6 3.4E-05 37.8 9.5 83 22-125 9-92 (98)
271 cd04012 C2A_PI3K_class_II C2 d 92.1 0.52 1.1E-05 46.5 7.7 88 2-89 9-119 (171)
272 cd08687 C2_PKN-like C2 domain 91.9 1.6 3.5E-05 37.7 9.2 84 557-657 8-92 (98)
273 cd08397 C2_PI3K_class_III C2 d 91.6 0.61 1.3E-05 45.3 7.3 70 20-89 28-107 (159)
274 PF10698 DUF2505: Protein of u 91.5 14 0.00031 35.8 17.2 145 257-416 4-156 (159)
275 cd08399 C2_PI3K_class_I_gamma 91.3 2.2 4.8E-05 42.2 11.0 69 539-608 12-88 (178)
276 PF00792 PI3K_C2: Phosphoinosi 89.9 1.5 3.2E-05 41.8 8.3 55 572-627 23-85 (142)
277 cd08399 C2_PI3K_class_I_gamma 88.9 2.5 5.3E-05 41.9 9.1 69 2-71 11-88 (178)
278 PF00792 PI3K_C2: Phosphoinosi 87.1 3.7 8E-05 39.0 9.0 55 35-89 22-85 (142)
279 smart00142 PI3K_C2 Phosphoinos 86.4 4.4 9.5E-05 36.0 8.4 71 539-609 13-92 (100)
280 KOG1452 Predicted Rho GTPase-a 85.5 1.6 3.4E-05 45.9 5.7 110 3-126 53-167 (442)
281 PF14470 bPH_3: Bacterial PH d 83.4 5.6 0.00012 34.6 7.7 62 698-759 1-64 (96)
282 smart00142 PI3K_C2 Phosphoinos 83.1 5.6 0.00012 35.3 7.6 69 3-71 13-91 (100)
283 PF14429 DOCK-C2: C2 domain in 81.8 5.7 0.00012 39.5 8.0 55 571-626 61-120 (184)
284 PF15625 CC2D2AN-C2: CC2D2A N- 81.3 37 0.0008 33.3 13.3 68 22-90 37-107 (168)
285 cd08694 C2_Dock-A C2 domains f 80.1 13 0.00027 37.3 9.5 55 571-625 55-114 (196)
286 cd08695 C2_Dock-B C2 domains f 75.2 15 0.00032 36.8 8.4 54 34-87 54-112 (189)
287 KOG0694 Serine/threonine prote 73.9 0.99 2.1E-05 52.6 -0.2 97 557-662 27-125 (694)
288 cd08695 C2_Dock-B C2 domains f 73.0 9.6 0.00021 38.0 6.5 53 571-624 55-111 (189)
289 PF14429 DOCK-C2: C2 domain in 72.0 11 0.00024 37.5 6.8 55 34-88 60-120 (184)
290 cd08694 C2_Dock-A C2 domains f 71.7 14 0.0003 37.0 7.3 54 34-87 54-114 (196)
291 PF14844 PH_BEACH: PH domain a 69.3 7.4 0.00016 34.8 4.5 69 704-775 2-86 (106)
292 KOG1329 Phospholipase D1 [Lipi 69.1 4.6 0.0001 48.6 3.8 100 557-658 137-240 (887)
293 PF15625 CC2D2AN-C2: CC2D2A N- 67.5 28 0.0006 34.2 8.4 67 558-627 37-106 (168)
294 cd08679 C2_DOCK180_related C2 65.8 16 0.00034 36.2 6.4 54 571-626 55-115 (178)
295 cd08679 C2_DOCK180_related C2 61.0 48 0.001 32.8 8.8 52 37-88 56-115 (178)
296 PTZ00447 apical membrane antig 57.4 1.2E+02 0.0027 32.8 11.2 111 3-125 60-172 (508)
297 PF11618 DUF3250: Protein of u 56.8 61 0.0013 29.2 7.9 95 25-126 2-105 (107)
298 cd08696 C2_Dock-C C2 domains f 55.6 29 0.00063 34.4 6.1 54 571-625 56-117 (179)
299 PF11618 DUF3250: Protein of u 55.6 39 0.00085 30.5 6.4 94 561-658 2-105 (107)
300 PF06219 DUF1005: Protein of u 52.1 88 0.0019 34.9 9.5 106 22-128 36-169 (460)
301 PF12068 DUF3548: Domain of un 51.8 17 0.00037 37.0 3.9 39 739-780 111-149 (213)
302 PF08567 TFIIH_BTF_p62_N: TFII 49.5 50 0.0011 28.0 5.8 53 720-775 14-68 (79)
303 KOG1329 Phospholipase D1 [Lipi 46.4 29 0.00063 42.1 5.2 103 22-128 138-242 (887)
304 cd08697 C2_Dock-D C2 domains f 46.4 55 0.0012 32.7 6.4 39 570-608 57-97 (185)
305 cd08696 C2_Dock-C C2 domains f 45.8 61 0.0013 32.1 6.6 39 33-71 54-95 (179)
306 cd08697 C2_Dock-D C2 domains f 45.8 68 0.0015 32.0 7.0 39 33-71 56-97 (185)
307 cd08868 START_STARD1_3_like Ch 43.8 3.5E+02 0.0076 27.2 13.1 92 317-415 107-205 (208)
308 KOG2419 Phosphatidylserine dec 43.1 5.3 0.00011 46.0 -1.4 57 557-615 304-361 (975)
309 KOG0694 Serine/threonine prote 42.3 9 0.0002 45.0 0.3 95 21-127 27-122 (694)
310 cd08903 START_STARD5-like Lipi 38.6 4.3E+02 0.0093 26.7 14.0 149 257-415 51-205 (208)
311 PF07162 B9-C2: Ciliary basal 37.3 3.5E+02 0.0077 26.3 10.6 78 3-86 4-101 (168)
312 PTZ00447 apical membrane antig 35.6 2.7E+02 0.0058 30.3 9.7 110 538-656 59-171 (508)
313 KOG4471 Phosphatidylinositol 3 33.6 71 0.0015 37.1 5.5 84 692-777 30-114 (717)
314 PF10409 PTEN_C2: C2 domain of 32.8 4E+02 0.0086 24.6 10.2 88 2-89 5-97 (134)
315 PF01060 DUF290: Transthyretin 32.2 1.6E+02 0.0035 24.8 6.3 39 594-642 8-46 (80)
316 smart00683 DM16 Repeats in sea 31.9 1.5E+02 0.0032 23.4 5.3 33 720-753 21-53 (55)
317 cd08869 START_RhoGAP C-termina 30.8 3.4E+02 0.0074 27.1 9.6 78 311-394 92-177 (197)
318 cd08870 START_STARD2_7-like Li 30.6 5.7E+02 0.012 25.7 13.7 147 259-418 57-209 (209)
319 cd08871 START_STARD10-like Lip 29.7 6.1E+02 0.013 25.7 11.9 93 319-418 106-203 (222)
320 PF07289 DUF1448: Protein of u 29.4 1.2E+02 0.0026 33.1 6.1 77 694-776 147-226 (339)
321 KOG0904 Phosphatidylinositol 3 28.0 1.9E+02 0.0041 35.4 7.9 66 539-607 345-421 (1076)
322 PF01852 START: START domain; 26.6 6.3E+02 0.014 24.9 13.5 96 318-419 103-204 (206)
323 PF06115 DUF956: Domain of unk 25.0 69 0.0015 29.2 2.9 41 715-756 20-60 (118)
324 cd08904 START_STARD6-like Lipi 25.0 7.3E+02 0.016 25.1 12.7 144 256-414 50-202 (204)
325 COG4687 Uncharacterized protei 23.5 53 0.0012 29.5 1.8 35 718-753 23-57 (122)
326 PF08151 FerI: FerI (NUC094) d 20.4 2.3E+02 0.005 23.6 4.9 45 86-131 3-47 (72)
327 cd08876 START_1 Uncharacterize 20.1 8.2E+02 0.018 23.9 14.2 138 256-409 45-188 (195)
No 1
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1e-21 Score=218.76 Aligned_cols=104 Identities=40% Similarity=0.653 Sum_probs=89.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEe---CCCCEEEEEEEecCCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDKYFN 75 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkv~~~t~nP~WnE~f~f~v~---~~~~~L~i~V~D~d~~~~ 75 (800)
.|.|+|++|++|+.++..|.+||||++.+.+ .+.+|++.++++||+|||+|.|.+. -....|.+.|||.|+|++
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr 247 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR 247 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence 5899999999999999777899999999964 5699999999999999999999983 235899999999999999
Q ss_pred CceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
+++||++.++|..+.... ....|.+|.+..
T Consensus 248 ~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~ 277 (421)
T KOG1028|consen 248 HDFIGEVILPLGEVDLLS---TTLFWKDLQPSS 277 (421)
T ss_pred ccEEEEEEecCccccccc---cceeeecccccc
Confidence 999999999988875322 256788887653
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=2.7e-22 Score=185.04 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=105.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCC-CCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCc
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~-t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 615 (800)
|+|.|+|++|++|+..+ .|++||||+|.+++++.+|+++.+ ++||+|||+|.|.+... ...|.|+|||+|. +++|+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCC-CcCCc
Confidence 57999999999998888 799999999999999999999866 89999999999987654 4689999999999 99999
Q ss_pred eeEEEEEEce-ecCCCCceeEEEECCccCcCccccceEEEEEE
Q 003728 616 SLGHAEINFV-KSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (800)
Q Consensus 616 ~iG~~~i~l~-~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~ 657 (800)
+||.+.|++. .+..++..+.|++|.++.+....|.|||.+.|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 56677778999999987776778999999875
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.86 E-value=6.8e-20 Score=213.03 Aligned_cols=123 Identities=29% Similarity=0.489 Sum_probs=108.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCC
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 613 (800)
+.|-|+|.+..|.||+..|.+|.+||||++.+++++ ++|+++++|+||.|||+|.+++.......+.+.|+|||. ..+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~-~~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS-GEK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc-CCC
Confidence 457899999999999999999999999999999996 999999999999999999999987778899999999999 889
Q ss_pred CceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEe
Q 003728 614 ATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 614 dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
+|.||.+.++|..+..+.....-++|+++......|.+|+.+.+.
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r 1161 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFR 1161 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceecc
Confidence 999999999999999888778888998875334456666655543
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=1e-20 Score=174.65 Aligned_cols=117 Identities=23% Similarity=0.474 Sum_probs=102.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~-t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
+|+|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+....|.|+|||+|.+++|++||
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 5899999999998777 789999999999999999999976 79999999999999766678999999999999999999
Q ss_pred eEEeeCcc-ccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 81 FLKIPVSR-VFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 81 ~v~i~l~~-l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
++.|++.. +.. +...+.||+|.+..++ ...|+|+|+++|
T Consensus 82 ~~~i~l~~~~~~---g~~~~~W~~L~~~~~~---~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVFN---GETLDDWYSLSGKQGE---DKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhccC---CCCccccEeCcCccCC---CCceEEEEEEeC
Confidence 99999964 543 2346899999876543 467999999987
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=6.8e-21 Score=178.55 Aligned_cols=117 Identities=19% Similarity=0.326 Sum_probs=102.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeC-----CCCcEEEEEEEEccCCCCC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-----EPPSMLDVEVYDFDGPFNE 613 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~-----~~~~~L~v~V~D~d~~~~~ 613 (800)
++|+|++|+||+.+|..|.+||||+|.+++++++|+++++++||+|||+|.|.+.. .....|.|.|||+|. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 57999999999999999999999999999999999999999999999999998865 246789999999998 889
Q ss_pred CceeEEEEEEceecC--CCCceeEEEECCccCc--CccccceEEEEE
Q 003728 614 ATSLGHAEINFVKSD--ISDLADVWIPLQGKLA--QACQSKLHLRIF 656 (800)
Q Consensus 614 dd~iG~~~i~l~~l~--~~~~~~~w~~L~~k~~--~~~~G~l~l~~~ 656 (800)
|++||++.|++.++. .+...+.|++|.++.+ ....|+|+|+++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 999999999999987 4556689999986533 235799998874
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=4e-20 Score=170.72 Aligned_cols=115 Identities=26% Similarity=0.493 Sum_probs=105.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
+|+|+|++|+||+..|..|.+||||++.++++.++|+++++|+||.|||+|.|.+.......|.|+|||+|. +++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 489999999999999999999999999999999999999999999999999998876657899999999998 8899999
Q ss_pred EEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEe
Q 003728 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
|++.+++.++..+...+.|++|.+. .|++++++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-----~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-----CcEEEEEEEec
Confidence 9999999999988889999999743 48899998775
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=5.3e-20 Score=171.25 Aligned_cols=118 Identities=27% Similarity=0.443 Sum_probs=107.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
|+|+|++|++|+..|..|.+||||++.++++ .++|+++.+++||.|||+|.|.+.. ..+.|.|+|||+|. +++|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d~-~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYDR-GLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCCC-CCCCcce
Confidence 8999999999999999999999999999884 5899999999999999999998754 36789999999999 8899999
Q ss_pred EEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEe
Q 003728 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
|++.+++.++..+...+.|++|.++.+....|.|+|++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 99999999999888899999998765556789999999875
No 8
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=3.9e-20 Score=173.41 Aligned_cols=120 Identities=32% Similarity=0.569 Sum_probs=104.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC------CCCEEEEEEEecCCCCCC
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED------LKDELVISVLDEDKYFND 76 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~------~~~~L~i~V~D~d~~~~d 76 (800)
++|+|++|+||+.++..|.+||||++.+++.+.+|+++++++||+|||+|.|.+.. ....|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999999999999999999999999999999999999999999965 357899999999998889
Q ss_pred ceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEE
Q 003728 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (800)
Q Consensus 77 ~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~ 124 (800)
++||++.|++.++... .+.....||+|.++.++ ..+.+|+|+|++.
T Consensus 81 ~~iG~~~i~l~~l~~~-~~~~~~~W~~L~~~~~~-~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDED-KGRRRTRWFKLESKPGK-DDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhcc-CCCcccEEEECcCCCCC-CccccceEEEEeC
Confidence 9999999999998632 23346799999965542 2467899999873
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=4.4e-20 Score=177.54 Aligned_cols=121 Identities=22% Similarity=0.326 Sum_probs=105.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCC-CCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~-t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
|+|+|++|+||+++|.+|++||||++.++++..+|+++.+ |+||+|||.|+|.+.....+.|.|+|||++. .++|++|
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~l 80 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEPL 80 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCeE
Confidence 8999999999999999999999999999999999998876 6999999999998865555789999999998 7889999
Q ss_pred EEEEEEceecCCC----CceeEEEECCccCc-------CccccceEEEEEEecC
Q 003728 618 GHAEINFVKSDIS----DLADVWIPLQGKLA-------QACQSKLHLRIFLNNT 660 (800)
Q Consensus 618 G~~~i~l~~l~~~----~~~~~w~~L~~k~~-------~~~~G~l~l~~~~~~~ 660 (800)
|++.|+|.++..+ ...+.||+|.+..+ ...+|+|||++.+...
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999998643 34589999986543 3568999999999843
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=6.2e-20 Score=170.47 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=99.5
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCC---
Q 003728 539 LTVALIKGDN---LAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFN--- 612 (800)
Q Consensus 539 L~V~vi~a~~---L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~--- 612 (800)
|.|+|++|+| |+++|..|++||||+|++++++.+|+++++++||+|||+|.|.+... ...|.|+|||+|. ++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~-~~~~~ 79 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQ-SHWKE 79 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCC-ccccc
Confidence 8999999999 89999999999999999999999999999999999999999987543 5689999999998 63
Q ss_pred ---CCceeEEEEEEceecCCCCceeEEEECCccC--cCccccceEE
Q 003728 613 ---EATSLGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHL 653 (800)
Q Consensus 613 ---~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~--~~~~~G~l~l 653 (800)
.|++||++.+++..+..+...+.||+|.... +....|.|++
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999999888889999998532 3345677764
No 11
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=4.2e-20 Score=171.14 Aligned_cols=117 Identities=22% Similarity=0.376 Sum_probs=103.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccC-CCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCc
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKF-QQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~-~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 615 (800)
|.|+|+|++|+||+..+..|++||||++.++++.++|+++. +++||.|||.|.|.+..+..+.|.|+|||++. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 46999999999999999999999999999999888888875 58999999999999877667889999999998 65 89
Q ss_pred eeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEE
Q 003728 616 SLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (800)
Q Consensus 616 ~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~ 657 (800)
+||++.+++.++..+...+.|++|..+. ...|.|+|++.|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999999987776779999998643 357899998864
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=9.3e-20 Score=171.13 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=104.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCC---CcEEEEEEEEccCCCC-CC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEP---PSMLDVEVYDFDGPFN-EA 614 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~---~~~L~v~V~D~d~~~~-~d 614 (800)
|+|+|++|++|++.|..|.+||||++.+++++++|+++.+++||.|||.|.|.+.... ...|.|+|||++. +. .|
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~d 80 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRRR 80 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCCC
Confidence 8999999999999999999999999999999999999999999999999999875432 3579999999998 65 89
Q ss_pred ceeEEEEEEceecC-CCCceeEEEECCccC-cCccccceEEEEEEe
Q 003728 615 TSLGHAEINFVKSD-ISDLADVWIPLQGKL-AQACQSKLHLRIFLN 658 (800)
Q Consensus 615 d~iG~~~i~l~~l~-~~~~~~~w~~L~~k~-~~~~~G~l~l~~~~~ 658 (800)
++||++.+++.++. .+.....||+|+.++ .....|.|+|++.++
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987 456678999998653 234689999999876
No 13
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=1.9e-19 Score=167.01 Aligned_cols=115 Identities=23% Similarity=0.351 Sum_probs=102.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCC
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 614 (800)
+|+|+|++|++|+..+..|++||||++.+++ ..++|+++++++||+|||+|.|.+.......|.|+|||+|. + +|
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~ 78 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MD 78 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CC
Confidence 3899999999999999999999999999863 45899999999999999999998866656689999999999 7 89
Q ss_pred ceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEe
Q 003728 615 TSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 615 d~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
++||++.+++.++..+...+.|++|..+ ..|+|++++.++
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~~----~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNPQ----GKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCCC----CCceEEEEEEee
Confidence 9999999999999988889999999754 368899988875
No 14
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=2.4e-19 Score=168.52 Aligned_cols=120 Identities=23% Similarity=0.417 Sum_probs=105.4
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCC
Q 003728 537 WLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~--~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 614 (800)
|+|+|+|++|+||+..+. .|.+||||++.++++.++|+++++++||.|||+|.|.+.....+.|.|+|||+|. ++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 579999999999999998 8999999999999999999999999999999999998876557899999999998 8899
Q ss_pred ceeEEEEEEceecCC---CCceeEEEECCccCc---CccccceEEEEEE
Q 003728 615 TSLGHAEINFVKSDI---SDLADVWIPLQGKLA---QACQSKLHLRIFL 657 (800)
Q Consensus 615 d~iG~~~i~l~~l~~---~~~~~~w~~L~~k~~---~~~~G~l~l~~~~ 657 (800)
++||++.+++.++.. ....+.|++|.++.. ....|+|+|++.+
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999999863 344589999986532 2358999999863
No 15
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3e-19 Score=167.65 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=105.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC----CCEEEEEEEecCCCC-CC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDEDKYF-ND 76 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~----~~~L~i~V~D~d~~~-~d 76 (800)
+|.|+|++|++|++.+..|.+||||++.+++++++|+++.++.||+|||.|.|.+... ...|.|+|||++.+. .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 5899999999999999889999999999999999999999999999999999999543 368999999999876 89
Q ss_pred ceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 77 ~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
++||++.+++.++.. .+.....||+|..++.. ...+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~--~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVP--PSEAVVQRYPLEKRGLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCC--CCCccceEeEeeeCCCC--CCccEEEEEEEEEc
Confidence 999999999999873 23346899999976432 35789999999873
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=6.3e-19 Score=169.57 Aligned_cols=126 Identities=31% Similarity=0.505 Sum_probs=108.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~-t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG 80 (800)
|+|+|++|+||++++.+|.+||||++.+++++.+|+++.+ +.||+|||.|.|.+.+. ...|.|+|||++.++++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 8999999999999999999999999999999999999977 69999999999999543 478999999999888899999
Q ss_pred eEEeeCcccccc-CCCCCccEEEEcccCCC----CCCCCcceEEEEEEEEEec
Q 003728 81 FLKIPVSRVFDA-DNKSLPTAWHSLQPKNK----KSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 81 ~v~i~l~~l~~~-~~~~~~~~w~~L~~~~~----~~~~~~~G~I~L~l~~~~~ 128 (800)
++.|||.++... +.+....+||+|....+ ++..+.+|+|+|+++|.+.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 999999998642 22345689999997653 2334678999999999754
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=5.2e-19 Score=164.56 Aligned_cols=120 Identities=33% Similarity=0.573 Sum_probs=106.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
+|+|+|++|++|+..+.+|.+||||++.+++ ...+|+++.++.||+|||+|.|.+.+....|.|+|||++.++++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 5899999999999999999999999999987 578999999999999999999999776789999999999988999999
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
++.+++.++... .....|++|.++.+ .+..|+|+|.++|.|
T Consensus 81 ~~~~~l~~l~~~---~~~~~~~~L~~~~~---~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELN---KPTEVKLKLEDPNS---DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCC---CCeEEEEECCCCCC---ccCceEEEEEEEECC
Confidence 999999998642 24678999986553 357899999999853
No 18
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.81 E-value=2.8e-19 Score=164.65 Aligned_cols=102 Identities=19% Similarity=0.324 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eeeEeeccCCCCCCeEeeEEEEEeeCC---CCcEEEEEEEEcc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN-----G--KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFD 608 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~--~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d 608 (800)
|+|+|++|+||+..+ .|.+||||+|++- . ++++|+++.+|+||+|||+|.|.+..+ ....|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999998 5999999999973 2 236899999999999999999998643 2356999999999
Q ss_pred CCCCCCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 609 ~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
. .++|++||++.+++.++..++..+.|++|...
T Consensus 81 ~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 F-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred c-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 8 78899999999999999998888999999754
No 19
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=3.1e-19 Score=165.97 Aligned_cols=115 Identities=27% Similarity=0.509 Sum_probs=103.0
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCC
Q 003728 537 WLLTVALIKGDNLAAVDS------SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~------~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 610 (800)
|+|+|+|++|+||+..|. .|.+||||++.++++.++|+++++++||.|||+|.|.+.....+.|.|+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 569999999999999885 3789999999999988999999999999999999998876667899999999998
Q ss_pred CCCCceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEE
Q 003728 611 FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (800)
Q Consensus 611 ~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~ 657 (800)
. +|++||++.+++.++..+...+.|++|.+. .+|+|++++++
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~~ 121 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLEW 121 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEeC
Confidence 6 889999999999999887778999999753 46899998764
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=6.3e-19 Score=166.96 Aligned_cols=118 Identities=20% Similarity=0.315 Sum_probs=102.6
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCC
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 614 (800)
..|.|+|+|++|++|++.|..|.+||||++.++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCC
Confidence 457899999999999999999999999999999999999999999999999999998876556789999999998 8899
Q ss_pred ceeEEEEEEceecCC-----CCceeEEEECCccCcCccccceEEEEEE
Q 003728 615 TSLGHAEINFVKSDI-----SDLADVWIPLQGKLAQACQSKLHLRIFL 657 (800)
Q Consensus 615 d~iG~~~i~l~~l~~-----~~~~~~w~~L~~k~~~~~~G~l~l~~~~ 657 (800)
++||++.+++.++.. ......|++|.+ ...|.|+|++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999998875 222346777743 346899999876
No 21
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=3.9e-19 Score=165.09 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=101.4
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCce
Q 003728 539 LTVALIKGDNLAAVD-SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 539 L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
|+|+|++|+||++++ ..|.+||||.|.++++. ++|+++++|+||.|||+|.|.+... ...|.|.|||+|. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCC-CCCCce
Confidence 789999999999974 46899999999998764 8999999999999999999988644 4689999999999 899999
Q ss_pred eEEEEEEceecCCCCceeEEEECCccC-cCccccceEEEEEE
Q 003728 617 LGHAEINFVKSDISDLADVWIPLQGKL-AQACQSKLHLRIFL 657 (800)
Q Consensus 617 iG~~~i~l~~l~~~~~~~~w~~L~~k~-~~~~~G~l~l~~~~ 657 (800)
||++.++++++..+...+.|++|.+.. .....|+|||++.+
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999998877789999998632 23358999998753
No 22
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1e-19 Score=171.03 Aligned_cols=95 Identities=31% Similarity=0.450 Sum_probs=88.3
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCC
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 614 (800)
.-|+|+|+|++|.||..+|..++|||||++.+++++.+|+++++++||+|||.|+|.+.+. ...|.++|||+|. ++.|
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~-fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDT-FSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCC-CCcc
Confidence 3478999999999999999889999999999999999999999999999999999977654 7899999999999 9999
Q ss_pred ceeEEEEEEceecCCCC
Q 003728 615 TSLGHAEINFVKSDISD 631 (800)
Q Consensus 615 d~iG~~~i~l~~l~~~~ 631 (800)
|+||.|+|+|..+....
T Consensus 82 D~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQ 98 (168)
T ss_pred cccceeeeccHHHHHHh
Confidence 99999999999887654
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=8.3e-19 Score=162.94 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=100.5
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCC-----
Q 003728 3 LVVRVIEARN---IPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF----- 74 (800)
Q Consensus 3 L~V~Vi~A~~---L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~----- 74 (800)
|.|+|++|+| |+.++..|.+||||++++++++.+|+++.+++||+|||+|.|.+.+....|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 8999999999 89999999999999999999999999999999999999999999766779999999999863
Q ss_pred -CCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEE
Q 003728 75 -NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (800)
Q Consensus 75 -~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L 121 (800)
+|++||++.+++..+... .....||+|.....+. .+..|+|++
T Consensus 82 ~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~-~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLNPSG-VKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCC---CEEeeEEEeEeCCCCC-ccCCcEEEe
Confidence 899999999999998642 2357899999765432 456788875
No 24
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=1.1e-18 Score=163.70 Aligned_cols=118 Identities=24% Similarity=0.403 Sum_probs=103.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCce
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG--KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~--~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
|.|+|++|+||+. ..|.+||||++.+++ ++++|+++++|+||.|||.|.|.+... ...|.|+|||+|. .++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCC-CCCCce
Confidence 5799999999998 678999999999974 558999999999999999999987543 6789999999999 888999
Q ss_pred eEEEEEEceecCCCCceeEEEECCccC--cCccccceEEEEEEecC
Q 003728 617 LGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHLRIFLNNT 660 (800)
Q Consensus 617 iG~~~i~l~~l~~~~~~~~w~~L~~k~--~~~~~G~l~l~~~~~~~ 660 (800)
||++.+++.++........|++|.++. +....|+|++++.|...
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999998888889999998653 24468999999998643
No 25
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.79 E-value=9.3e-19 Score=163.38 Aligned_cols=116 Identities=28% Similarity=0.513 Sum_probs=102.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeE
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLG 618 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG 618 (800)
|+|+|++|++|+.+|..|.+||||+|.++++..+|+++++++||.|||+|.|.+.......|.|+|||+|. ++++++||
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~iG 80 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFLG 80 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEeE
Confidence 89999999999999999999999999999999999999999999999999998876656789999999998 88999999
Q ss_pred EEEEEceecCCCCceeEEEECCccC-----cCccccceEEEE
Q 003728 619 HAEINFVKSDISDLADVWIPLQGKL-----AQACQSKLHLRI 655 (800)
Q Consensus 619 ~~~i~l~~l~~~~~~~~w~~L~~k~-----~~~~~G~l~l~~ 655 (800)
++.+++.++......+.|+.|.+.. .....|.|++.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999998777779999998522 223477777765
No 26
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.6e-18 Score=162.89 Aligned_cols=124 Identities=31% Similarity=0.568 Sum_probs=108.1
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCce
Q 003728 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~--~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~ 78 (800)
.|+|+|++|+||+..+. .+.+||||.+.++.++.+|++++++.||.|||+|.|.+.. ....|.|+|||++.++++++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~ 81 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDY 81 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCc
Confidence 48999999999999988 8899999999999999999999999999999999999965 56899999999999888999
Q ss_pred eEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 79 lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
||++.+++.++...+.......||.|.++.........|+|+|++++
T Consensus 82 lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 82 LGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999998743233346799999977544445689999999874
No 27
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=2.1e-18 Score=160.24 Aligned_cols=118 Identities=27% Similarity=0.464 Sum_probs=101.8
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 3 LVVRVIEARNIPAMD-QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
|.|+|++|+||++.+ .+|.+||||.+.++++ ..+|+++++++||+|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999999874 4678999999999865 58999999999999999999999766689999999999999999999
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
.+.++++++.. +...+.||+|++.... .+.+|+|+|+++|
T Consensus 82 ~~~i~l~~l~~---~~~~~~w~~L~~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHK---YYGKDTWFPLQPVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccC---CCCcEeeEEEEccCCC--CcccEEEEEEEEC
Confidence 99999999864 2346899999976433 2468999999874
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.2e-18 Score=161.93 Aligned_cols=113 Identities=24% Similarity=0.355 Sum_probs=99.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeE
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLG 618 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG 618 (800)
|+|+|++|+||+.+ .+||||++.++++..+|+++++++||.|||+|.|.+.......|.|+|||+|. + .+++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 89999999999988 79999999999988999999999999999999998765556789999999998 6 788999
Q ss_pred EEEEEceecCCCC-----ceeEEEECCccCcCccccceEEEEEE
Q 003728 619 HAEINFVKSDISD-----LADVWIPLQGKLAQACQSKLHLRIFL 657 (800)
Q Consensus 619 ~~~i~l~~l~~~~-----~~~~w~~L~~k~~~~~~G~l~l~~~~ 657 (800)
++.+++.++.... ..+.||+|....+....|.|+|.+.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999986533 24689999876555568999999876
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.9e-18 Score=160.43 Aligned_cols=116 Identities=34% Similarity=0.586 Sum_probs=101.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCceeEe
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
|.|+|++|+||+.+ .+||||++.+++++.+|++++++.||+|||+|.|.+.. ....|.++|||++.+ ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 69999999999999999999999999999999999965 468899999999986 7899999
Q ss_pred EEeeCccccccC--CCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 82 LKIPVSRVFDAD--NKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 82 v~i~l~~l~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
+.++++++.... .+....+||+|.++.+ .+.+|+|+|++.|.
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~---~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKG---GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCC---CccceEEEEEEEec
Confidence 999999986422 2334679999998754 36789999999983
No 30
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=3.5e-18 Score=160.03 Aligned_cols=116 Identities=16% Similarity=0.330 Sum_probs=99.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCce
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
.|+|+|++|+||+.. +.+||||+|.+++.+ .+|+++ +++||.|||+|.|.+.......|.|.|||+|. +++|++
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~~ 79 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDSE 79 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCCe
Confidence 499999999999985 479999999998865 688875 68999999999997654434679999999999 899999
Q ss_pred eEEEEEEceecCCCCceeEEEECCccC--cCccccceEEEEEEe
Q 003728 617 LGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHLRIFLN 658 (800)
Q Consensus 617 iG~~~i~l~~l~~~~~~~~w~~L~~k~--~~~~~G~l~l~~~~~ 658 (800)
||++.|+|..+..+...+.|++|.+.. +....|.|+|++.|.
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 999999999998888889999998754 345579999999986
No 31
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=3.6e-18 Score=165.96 Aligned_cols=119 Identities=22% Similarity=0.334 Sum_probs=102.1
Q ss_pred eEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eEeeccCCCCCCeEe
Q 003728 537 WLLTVALIKGDNLAAVD------------------------------SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWN 585 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d------------------------------~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~Wn 585 (800)
|+|.|+|++|++|+.+| ..|++||||+|.+++.+ .+|+++++++||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 77999999999999988 35779999999999866 699999999999999
Q ss_pred eEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcC--ccccceEEEEEEe
Q 003728 586 EIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ--ACQSKLHLRIFLN 658 (800)
Q Consensus 586 E~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~--~~~G~l~l~~~~~ 658 (800)
|+|.|.+. ...+.|.|.|||+|. ++ +++||++.+++.++..+...+.|++|.+..+. ...|+|||++.|.
T Consensus 87 E~F~~~~~-~~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCA-HYASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEcc-CCCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999764 446789999999998 65 57999999999999888888999999864333 3468999998873
No 32
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=3.7e-18 Score=158.75 Aligned_cols=116 Identities=20% Similarity=0.365 Sum_probs=100.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
|.|+|++|++|+++|..|++||||++.++++. ++|+++.+++||.|||.|.|.+... ...|.|+|||+|. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCC-CCCCCEE
Confidence 89999999999999999999999999998875 7999999999999999999987543 5789999999998 8899999
Q ss_pred EEEEEEceecCCCC-ceeEEEECCccC-cCccccceEEEEE
Q 003728 618 GHAEINFVKSDISD-LADVWIPLQGKL-AQACQSKLHLRIF 656 (800)
Q Consensus 618 G~~~i~l~~l~~~~-~~~~w~~L~~k~-~~~~~G~l~l~~~ 656 (800)
|++.+++.++.... ..+.|++|.+.. .....|+|++.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999998876533 368999998632 3345789988865
No 33
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=3.8e-18 Score=161.52 Aligned_cols=122 Identities=30% Similarity=0.551 Sum_probs=105.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-------~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~ 74 (800)
.|+|+|++|+||+..+..+.+||||++.+++. +.+|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999998899999999999754 57999999999999999999999766788999999999988
Q ss_pred CCceeEeEEeeCccccccCCC---CCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 75 NDDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
++++||++.+++.++...... .....||+|.++... .+..|+|+|++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK--SRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC--CcceeEEEEEEee
Confidence 999999999999998753221 246799999975433 3679999999998
No 34
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=2.7e-18 Score=159.05 Aligned_cols=115 Identities=32% Similarity=0.550 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCcee
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFV 79 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~-t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~l 79 (800)
+|.|+|++|+||+..+..+.+||||++.+++.+.+|+++.+ +.||+|||.|.|.+.. ....|.|+|||++..+ +++|
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~i 80 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLI 80 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccce
Confidence 69999999999999999999999999999999999998865 7999999999999954 4578999999999865 8999
Q ss_pred EeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 80 G~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
|++.+++.++...+ ....||+|...+ +..|+|+|+++|
T Consensus 81 G~~~~~l~~~~~~~---~~~~w~~L~~~~-----~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG---EFDDWYELTLKG-----RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC---CCCCcEEeccCC-----cEeeEEEEEEEC
Confidence 99999999986532 357999998643 568999999986
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=1.8e-18 Score=165.42 Aligned_cols=114 Identities=25% Similarity=0.393 Sum_probs=94.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeC--------------C-CCc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMD--------------E-PPS 598 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~--------------~-~~~ 598 (800)
|+|+|++|+||+. .+|.+||||+|.+.+ +.++|+++++|+||+|||+|.|++.. + ...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999998 578999999999876 45899999999999999999998841 1 235
Q ss_pred EEEEEEEEccCCCCCCceeEEEEEEceecCCC-CceeEEEECCccCc-----------CccccceEEEE
Q 003728 599 MLDVEVYDFDGPFNEATSLGHAEINFVKSDIS-DLADVWIPLQGKLA-----------QACQSKLHLRI 655 (800)
Q Consensus 599 ~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~-~~~~~w~~L~~k~~-----------~~~~G~l~l~~ 655 (800)
.|.|.|||++. ++.|+|||++.|++..+..+ ...+.||+|..+.. .+..|.|+|++
T Consensus 80 ~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 69999999998 78999999999999999876 56789999975422 23466776654
No 36
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=2e-18 Score=160.60 Aligned_cols=102 Identities=28% Similarity=0.430 Sum_probs=91.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEc
Q 003728 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDF 607 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~ 607 (800)
.+.|+|+|++|+||+.++ .|.+||||++.+. ..+++|+++++++||.|||+|.|++.. .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 567999999999999999 9999999999985 235899999999999999999998622 2356899999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEEC
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
|. ++++++||++.|+|.++...+..+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99 89999999999999999888778999998
No 37
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.77 E-value=5.5e-18 Score=158.84 Aligned_cols=118 Identities=23% Similarity=0.467 Sum_probs=102.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCC
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~---~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 614 (800)
.|+|+|++|++|+..+..|.+||||++.+++. .++|+++++++||.|||+|.|.+.......|.|+|||+|. ++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCCC
Confidence 58999999999999999999999999998643 4899999999999999999998876556789999999998 7899
Q ss_pred ceeEEEEEEceecCC---CCceeEEEECCccCcCccccceEEEEEEecCCC
Q 003728 615 TSLGHAEINFVKSDI---SDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (800)
Q Consensus 615 d~iG~~~i~l~~l~~---~~~~~~w~~L~~k~~~~~~G~l~l~~~~~~~~~ 662 (800)
++||++.++|..+.. +...+.|++|.+ +|++++++.+...++
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~~ 125 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGERD 125 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeecc
Confidence 999999999987543 335689999963 589999999987654
No 38
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=8.4e-18 Score=159.49 Aligned_cols=122 Identities=24% Similarity=0.474 Sum_probs=104.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC----------CCCEEEEEEEecC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED----------LKDELVISVLDED 71 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~----------~~~~L~i~V~D~d 71 (800)
+|+|+|++|++|+.++..|.+||||++.+++++.+|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 699999999999999999999999999999999999999999999999999998522 1257999999999
Q ss_pred CCCCCceeEeEEe-eCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 72 KYFNDDFVGFLKI-PVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 72 ~~~~d~~lG~v~i-~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
..++|++||++.+ |+..+...+......+||+|.... ...|+|+|++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~-----~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG-----QSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC-----CchhheeEEeEEEEe
Confidence 9889999999986 655554433455678999998543 478999999999753
No 39
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=7.7e-18 Score=156.18 Aligned_cols=117 Identities=26% Similarity=0.446 Sum_probs=102.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCce
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
|.|+|+|++|+||+..+..+.+||||++.+++...+|+++++++||.|||+|.|.+.. ....|.|+|||++. .+++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCC-CCCCce
Confidence 4699999999999999999999999999999988999999999999999999998643 36789999999998 789999
Q ss_pred eEEEEEEceecCCCCceeEEEECCccCc-CccccceEEEEEE
Q 003728 617 LGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFL 657 (800)
Q Consensus 617 iG~~~i~l~~l~~~~~~~~w~~L~~k~~-~~~~G~l~l~~~~ 657 (800)
||++.+++.++..+. ..|++|..... ....|+|+|++.+
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999986543 68999986533 3458999998875
No 40
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=8.6e-18 Score=155.13 Aligned_cols=113 Identities=34% Similarity=0.618 Sum_probs=101.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeEe
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
|+|+|++|+||+..+.++.+||||++.+++++.+|+++.++.||.|||+|.|.+.+. ...|.|+|||++.++++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 789999999999999889999999999999999999999999999999999999554 6899999999999889999999
Q ss_pred EEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 82 v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
+.++|.++... .....|++|.+. .|+|++.+.|.
T Consensus 82 ~~~~l~~l~~~---~~~~~w~~L~~~--------~G~~~~~~~~~ 115 (116)
T cd08376 82 CEIDLSALPRE---QTHSLELELEDG--------EGSLLLLLTLT 115 (116)
T ss_pred EEEeHHHCCCC---CceEEEEEccCC--------CcEEEEEEEec
Confidence 99999998642 346899999842 59999999874
No 41
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=4.2e-18 Score=161.27 Aligned_cols=118 Identities=23% Similarity=0.287 Sum_probs=101.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCC
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-------SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-------~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 610 (800)
+|+|+|++|+||+.+|..|.+||||++.+.+. .++|+++++|+||.|||+|.|.+... ...|.|+|||+|.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCC-
Confidence 38999999999999999999999999998765 37899999999999999999987553 5689999999998
Q ss_pred CCCCceeEEEEEEceecCCCCc------eeEEEECCccC-cCccccceEEEEEE
Q 003728 611 FNEATSLGHAEINFVKSDISDL------ADVWIPLQGKL-AQACQSKLHLRIFL 657 (800)
Q Consensus 611 ~~~dd~iG~~~i~l~~l~~~~~------~~~w~~L~~k~-~~~~~G~l~l~~~~ 657 (800)
+++|++||++.+++.++..... ...|++|++.. .....|.|+|++.|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8899999999999999876543 36899998643 23458999999876
No 42
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.76 E-value=2.2e-18 Score=156.51 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=87.6
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEc
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~----~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 607 (800)
...+.|+|+|++|+||+ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|++..+ ....|.|.|||+
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 34577999999999999 246799999999853 358999999999999999999988543 356799999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEEC
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
|. ++++++||++.+++.++..+...+.|..|
T Consensus 88 Dr-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 88 DR-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CC-CCCCceEEEEEEccccccCCccccchhcC
Confidence 99 99999999999999988777777888765
No 43
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=8.9e-18 Score=156.75 Aligned_cols=119 Identities=31% Similarity=0.561 Sum_probs=103.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG 80 (800)
+|+|+|++|++|+.++.++.+||||++.+++.+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 5899999999999999888999999999999999999999999999999999999554 578999999999988999999
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCCCC--CCCCcceEEEEEE
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKK--SKNKDCGEILLTI 123 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~--~~~~~~G~I~L~l 123 (800)
++.+++.++...+ ....||.|.+...+ ...+..|.|++.|
T Consensus 81 ~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC---CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999986422 35789999975533 2456789999876
No 44
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=1.1e-17 Score=156.79 Aligned_cols=120 Identities=23% Similarity=0.459 Sum_probs=103.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~--~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
|.|+|++|+||+. ..|.+||||++.++. ++.+|+++.++.||+|||+|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 6799999999988 678999999999973 578999999999999999999999666788999999999988899999
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
++.+++.++...+ ....|++|.++... .....|+|.+.+.|...
T Consensus 79 ~~~i~l~~l~~~~---~~~~~~~L~~~~~~-~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNP---SGRQIFPLQGRPYE-GDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCC---ceeEEEEecCCCCC-CCCcceEEEEEEEEecc
Confidence 9999999987533 35689999976432 24679999999999654
No 45
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1e-17 Score=158.34 Aligned_cols=115 Identities=25% Similarity=0.391 Sum_probs=101.6
Q ss_pred CeEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEE
Q 003728 536 GWLLTVALIKGDNLAAVDSS----------GFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEV 604 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~----------g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V 604 (800)
.|.|+|+|++|++|+..|.. |.+||||++.++++. .+|+++++|+||.|||+|+|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence 36799999999999998863 689999999999876 79999999999999999999875 357899999
Q ss_pred EEccCCCCCCceeEEEEEEceecCC--CCceeEEEECCccCcCccccceEEEEEEec
Q 003728 605 YDFDGPFNEATSLGHAEINFVKSDI--SDLADVWIPLQGKLAQACQSKLHLRIFLNN 659 (800)
Q Consensus 605 ~D~d~~~~~dd~iG~~~i~l~~l~~--~~~~~~w~~L~~k~~~~~~G~l~l~~~~~~ 659 (800)
||++. ++++++||++.++|.++.. +...+.|++|. .+|+|+|++.+..
T Consensus 81 ~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred EeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEcc------CCcEEEEEEEEec
Confidence 99998 7889999999999999887 56679999996 3589999999874
No 46
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=3.5e-18 Score=154.76 Aligned_cols=101 Identities=27% Similarity=0.338 Sum_probs=91.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
+|.|+|++|++|+..+..|.+||||+++++++.++|+++.++.||+|||+|.|.+..+..+.|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCcc
Confidence 389999999999999999999999999999999999999999999999999999877667789999999874 7899
Q ss_pred EEEEEEceecCCCC--ceeEEEECCcc
Q 003728 618 GHAEINFVKSDISD--LADVWIPLQGK 642 (800)
Q Consensus 618 G~~~i~l~~l~~~~--~~~~w~~L~~k 642 (800)
|++.++|.++.... ..+.||+|.++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999987554 46899999865
No 47
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=1.2e-17 Score=158.22 Aligned_cols=117 Identities=35% Similarity=0.640 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG 80 (800)
+|+|+|++|++|++.+..|.+||||++.++.+..+|++++++.||.|||+|.|.+.+. ...|.|+|||++.+++|++||
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG 95 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLG 95 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeE
Confidence 5899999999999999999999999999999999999999999999999999999654 478999999999988999999
Q ss_pred eEEeeCccccccCCCCCc--cEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 81 FLKIPVSRVFDADNKSLP--TAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~--~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
++.+++.++......... ..|..|. ....|+|+|++++
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~~~~~-------~~~~g~i~l~~~~ 135 (136)
T cd08375 96 RTEIRVADILKETKESKGPITKRLLLH-------EVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEHHHhccccccCCCcEEEEeccc-------cccceeEEEEEEe
Confidence 999999999752222222 3455553 2568999999987
No 48
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=2.2e-17 Score=153.15 Aligned_cols=117 Identities=34% Similarity=0.625 Sum_probs=104.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEe
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
+|.|+|++|+||+..+.++.+||||++.++....+|++++++.||.|||+|.|.+.+....|.|+|||++..+++++||+
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGK 81 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeE
Confidence 58999999999999999999999999999998999999999999999999999997767899999999998889999999
Q ss_pred EEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 82 v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
+.+++.++... ...||.|.++... .+..|+|+|++.+
T Consensus 82 ~~~~l~~~~~~-----~~~~~~l~~~~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 82 VAIPLLSIKNG-----ERKWYALKDKKLR--TRAKGSILLEMDV 118 (119)
T ss_pred EEEEHHHCCCC-----CceEEECcccCCC--CceeeEEEEEEEe
Confidence 99999998532 3689999876533 3579999999876
No 49
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=8.3e-18 Score=159.95 Aligned_cols=107 Identities=23% Similarity=0.334 Sum_probs=93.6
Q ss_pred CeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--Ce---eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEE-Ecc
Q 003728 536 GWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY-DFD 608 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~-D~d 608 (800)
.+.|.|+|++|+||++.+ ..|.+||||++++. ++ +++|+++++|+||+|||+|.|.+. .....|.|+|| |+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 467999999999999874 67899999999973 22 489999999999999999999987 55778999999 688
Q ss_pred CCCCCCceeEEEEEEceecCCCCceeEEEECCccCc
Q 003728 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA 644 (800)
Q Consensus 609 ~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~ 644 (800)
. ++++++||.+.|+|+++..+.....||+|.++..
T Consensus 107 ~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 R-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred C-CCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 8 8899999999999999987777789999986543
No 50
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=5.1e-18 Score=159.67 Aligned_cols=91 Identities=44% Similarity=0.749 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEe
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
-|+|+|++|.||..+|..+++||||.+++++++.+|+++.+++||+|||+|.|.+.+....|.+.|||+|.++.|+|+|.
T Consensus 7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~ 86 (168)
T KOG1030|consen 7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGE 86 (168)
T ss_pred EEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccce
Confidence 48999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCcccccc
Q 003728 82 LKIPVSRVFDA 92 (800)
Q Consensus 82 v~i~l~~l~~~ 92 (800)
+.|||..+...
T Consensus 87 A~I~l~p~~~~ 97 (168)
T KOG1030|consen 87 ATIPLKPLLEA 97 (168)
T ss_pred eeeccHHHHHH
Confidence 99999999763
No 51
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=7.8e-18 Score=161.09 Aligned_cols=118 Identities=36% Similarity=0.526 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEe---------------CC-C
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE---------------DL-K 60 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~---------------~~-~ 60 (800)
+|.|+|++|+||+. .+|.+||||+|.+.. .+++|+++++++||+|||+|.|.+. +. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999998 568999999999975 5789999999999999999999994 11 2
Q ss_pred CEEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCC--------CCCcceEEEEEE
Q 003728 61 DELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS--------KNKDCGEILLTI 123 (800)
Q Consensus 61 ~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~--------~~~~~G~I~L~l 123 (800)
..|.|.|||++.+++|+|||++.|++..+... ......||+|.++..++ +....|.|+|.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccccc--CCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999998643 12357899999875433 233457777654
No 52
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=3.3e-17 Score=153.48 Aligned_cols=119 Identities=20% Similarity=0.319 Sum_probs=105.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEeE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFL 82 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~v 82 (800)
|+|+|++|++|+..+.+|.+||||++.+++++.+|++++++.||+|||.|.|.+.+....|.|+|||++.+ +|++||.+
T Consensus 5 ~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~lG~~ 83 (126)
T cd04046 5 TQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFLGQA 83 (126)
T ss_pred EEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCceEEE
Confidence 78999999999999999999999999999999999999999999999999999977788999999999986 58999999
Q ss_pred EeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 83 KIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 83 ~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
.+++.++. .....|++|..+..+.+....|+|.+++.+.+
T Consensus 84 ~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 84 TLSADPND-----SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEecccCC-----CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99998753 23568999986655566788999999998753
No 53
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=1.5e-17 Score=156.05 Aligned_cols=115 Identities=24% Similarity=0.461 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCC-------
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP------- 610 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~------- 610 (800)
.|+|+|++|++|+..|..|.+||||+|.+++...+|+++.+++||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 4899999999999999999999999999998889999999999999999999977543 56899999999851
Q ss_pred ---CCCCceeEEEEEEceecCCCCceeEEEECCccCcC-ccccceEEEE
Q 003728 611 ---FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRI 655 (800)
Q Consensus 611 ---~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~-~~~G~l~l~~ 655 (800)
.+.+++||++.+++.++. +..+.|++|.++++. ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999998874 445899999976543 4588888764
No 54
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=3.3e-17 Score=153.48 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=100.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCc
Q 003728 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 615 (800)
.++|+|+|++|++|+..|..|.+||||++.++++.++|+++++++||.|||.|.|.+.. ....|.|+|||++. + .|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC-CCCEEEEEEEECCC-C-CCC
Confidence 36899999999999999999999999999999999999999999999999999996654 47789999999998 5 589
Q ss_pred eeEEEEEEceecCCCCceeEEEECCc---cCcCccccceEEEEEEe
Q 003728 616 SLGHAEINFVKSDISDLADVWIPLQG---KLAQACQSKLHLRIFLN 658 (800)
Q Consensus 616 ~iG~~~i~l~~l~~~~~~~~w~~L~~---k~~~~~~G~l~l~~~~~ 658 (800)
+||.+.+++..+. .....|++|.. +......|.|.|++.+.
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999998754 34467888863 23445689999988764
No 55
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=2.5e-17 Score=156.30 Aligned_cols=118 Identities=22% Similarity=0.381 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCC---------CCcEEEEEEEEcc
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE---------PPSMLDVEVYDFD 608 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~---------~~~~L~v~V~D~d 608 (800)
.|+|+|++|++|+.+|..|.+||||+|.++++.++|+++++|+||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5999999999999999999999999999999999999999999999999999975321 1257999999999
Q ss_pred CCCCCCceeEEEEE-EceecC---CCCceeEEEECCccCcCccccceEEEEEEe
Q 003728 609 GPFNEATSLGHAEI-NFVKSD---ISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 609 ~~~~~dd~iG~~~i-~l~~l~---~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
. .++|++||++.+ ++..+. .......|++|... ....|+|.|.+++.
T Consensus 82 ~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~--~~~~Geil~~~~~~ 132 (135)
T cd04017 82 S-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG--GQSAGELLAAFELI 132 (135)
T ss_pred C-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecC--CCchhheeEEeEEE
Confidence 9 889999999997 444443 23556899999744 23689999999875
No 56
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.74 E-value=1e-17 Score=156.55 Aligned_cols=107 Identities=26% Similarity=0.369 Sum_probs=92.9
Q ss_pred cCCCeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDS-SGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEV 604 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V 604 (800)
....+.|.|+|++|+||++.+. .|.+||||++++. ..+++|+++++++||+|||+|.|.+..+ ....|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3456789999999999999875 5899999999974 2248899999999999999999987543 245799999
Q ss_pred EEccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 605 YDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 605 ~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
||+|. ++++++||++.|++..+...+..+.|++|.
T Consensus 91 ~d~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999 899999999999999999888889999983
No 57
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=2.9e-17 Score=154.09 Aligned_cols=115 Identities=34% Similarity=0.598 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCC--------
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~-------- 73 (800)
+|+|+|++|++|+..+..|.+||||++.+++...+|+++.+++||.|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 699999999999999999999999999999999999999999999999999999865567899999999852
Q ss_pred ---CCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEE
Q 003728 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (800)
Q Consensus 74 ---~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l 123 (800)
..+++||++.+++.++.. ....||.|.++... ...+|+|+|++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~-----~~~~w~~L~~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG-----EMDVWYNLEKRTDK--SAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC-----CCCeEEECccCCCC--CcEeEEEEEEC
Confidence 468999999999998732 24799999987643 36799999975
No 58
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=5.8e-17 Score=151.74 Aligned_cols=118 Identities=24% Similarity=0.435 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEecCCCCCCcee
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYFNDDFV 79 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~-~kTkv~~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~d~~~~d~~l 79 (800)
.|+|+|++|+||+.. +.+||||++.+++.+ .+|++. ++.||.|||+|.|.+.+.. ..|.|.|||++.+++|++|
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 489999999999875 479999999998754 688874 6899999999999874433 6899999999998999999
Q ss_pred EeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 80 G~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
|++.+||..+.. +.....||+|.+... ......|+|+|+++|..
T Consensus 81 G~v~i~l~~l~~---~~~~~~W~~L~~~~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQN---GQETDEWYPLSSASP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccC---CCcccEeEEcccCCC-CCCCcCcEEEEEEEEEc
Confidence 999999999864 234578999997643 22467899999999964
No 59
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.74 E-value=9.7e-18 Score=153.20 Aligned_cols=101 Identities=21% Similarity=0.464 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeEeeccCCCCCCeE-eeEEEEEeeCC--CCcEEEEEEEEccCCCCCC
Q 003728 539 LTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKSRTSSIKFQQCDPMW-NEIFEYDAMDE--PPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~~~~~~T~v~~~t~nP~W-nE~f~f~~~~~--~~~~L~v~V~D~d~~~~~d 614 (800)
|+|+|++|+||+.++. .|.+||||++.++++.++|+++++++||.| ||+|.|.+... ..+.|.|+|||+|. +++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 6899999999999984 789999999999998899999999999999 99999987553 24689999999999 8999
Q ss_pred ceeEEEEEEceecCC---CCceeEEEECC
Q 003728 615 TSLGHAEINFVKSDI---SDLADVWIPLQ 640 (800)
Q Consensus 615 d~iG~~~i~l~~l~~---~~~~~~w~~L~ 640 (800)
++||++.+++.++.. ....+.||+|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999876 34468899995
No 60
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=4.4e-17 Score=151.54 Aligned_cols=118 Identities=30% Similarity=0.502 Sum_probs=101.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEe
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~-~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
|.|+|++|++|++++.+|.+||||++.+++.. .+|+++.+++||.|||.|.|.+.+....|.|.|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 89999999999999999999999999998754 79999999999999999999997666899999999999899999999
Q ss_pred EEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEE
Q 003728 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (800)
Q Consensus 82 v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~ 124 (800)
+.+++..+... ......|++|.+.... ....|+|+|.++
T Consensus 82 ~~~~~~~~~~~--~~~~~~W~~L~~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAH--PRGIDGWMNLTEVDPD--EEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccC--CCCCCcEEECeeeCCC--CccccEEEEEEE
Confidence 99999887532 1235789999875432 357899999875
No 61
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=3.6e-17 Score=153.58 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=103.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEccCCCCCCceeEEE
Q 003728 543 LIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEATSLGHA 620 (800)
Q Consensus 543 vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~dd~iG~~ 620 (800)
|++|++|+. ..|++||||+|.+++.+++|++++++.||+|||+|.|.+... ..+.|.|+|||++. .++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 689999999 688999999999999999999999999999999999988543 46789999999998 8899999999
Q ss_pred EEEceecCCCCceeEEEECCccCcCccccceEEEEEEecCCC
Q 003728 621 EINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (800)
Q Consensus 621 ~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~~~~~ 662 (800)
.+++.++..+.....|++|....+....|.|++++.|....+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999998888899999986555555789999999875443
No 62
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=2.4e-17 Score=151.20 Aligned_cols=101 Identities=30% Similarity=0.453 Sum_probs=89.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEe
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
+|.|+|++|++|+..+ ..||||.+++++++.+|+++++ .||.|||+|.|.+.+....|.|+|||++.+ .|++||+
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 6999999999997654 4689999999999999999988 499999999999987777799999999974 8999999
Q ss_pred EEeeCccccccCCCCCccEEEEcccCC
Q 003728 82 LKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 82 v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
+.|||.++...+ ..+..+||+|.+.-
T Consensus 78 v~i~L~~v~~~~-~~~~~~Wy~L~~~~ 103 (127)
T cd08394 78 VWIPLSTIRQSN-EEGPGEWLTLDSEV 103 (127)
T ss_pred EEEEhHHcccCC-CCCCCccEecChHH
Confidence 999999998753 45678999999653
No 63
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-17 Score=181.81 Aligned_cols=118 Identities=30% Similarity=0.464 Sum_probs=105.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
.|+|+|.+|+|||+.+..|..||||.|.++.+ ..+|.++-+++.|-|.|+|.|.++..-..|.+.|||.| +++|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccc
Confidence 48999999999999999999999999999875 59999999999999999999999887899999999999 79999999
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
.+.|.-.+|...+ ..+.|+.|.+-... ..++|+|+|++.+
T Consensus 85 Kvai~re~l~~~~---~~d~W~~L~~VD~d--sEVQG~v~l~l~~ 124 (800)
T KOG2059|consen 85 KVAIKREDLHMYP---GKDTWFSLQPVDPD--SEVQGKVHLELAL 124 (800)
T ss_pred eeeeeHHHHhhCC---CCccceeccccCCC--hhhceeEEEEEEe
Confidence 9999888885422 46899999987654 3688999999987
No 64
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=3.1e-17 Score=153.03 Aligned_cols=119 Identities=24% Similarity=0.432 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCC--Cce
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN--DDF 78 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~--d~~ 78 (800)
+|+|+|++|++|+..+.++.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++ +++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 489999999999999999999999999996 678999999999999999999999965 7899999999998765 589
Q ss_pred eEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEE
Q 003728 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (800)
Q Consensus 79 lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l 123 (800)
||++.+++.++..... ....||+|++..........|+|.+.+
T Consensus 80 lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD--TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC--CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975332 246799998776545567789999876
No 65
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=1.3e-17 Score=156.02 Aligned_cols=105 Identities=30% Similarity=0.476 Sum_probs=91.7
Q ss_pred CCeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEE
Q 003728 535 DGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 606 (800)
..+.|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++++||+|||+|.|++... ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 446799999999999999976 899999999973 2238999999999999999999987532 34589999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
+|. ++++++||++.|+|.++...+....|++|.
T Consensus 93 ~~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 93 RDS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 999 899999999999999998877778999983
No 66
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=1.6e-17 Score=155.22 Aligned_cols=107 Identities=31% Similarity=0.548 Sum_probs=94.6
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEc
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~---~~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 607 (800)
....+.|.|+|++|+||+++|..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 34567899999999999999999999999999983 3348999999999999999999987543 245899999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
|. ++++++||++.+++.++..++..+.|++|.
T Consensus 92 ~~-~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQ-FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CC-CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 98 889999999999999998888889999985
No 67
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=1.9e-17 Score=150.34 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=83.3
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCC-CCcEEEEEEEEccCCC
Q 003728 537 WLLTVALIKGDNLAAVDSS----GFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE-PPSMLDVEVYDFDGPF 611 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~----g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~~~ 611 (800)
|+|.|+|++|++|++.+.. +.+||||+|.++++.++|+++++++||+|||.|.|.+... ....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 5799999999999998742 4589999999998889999999999999999999987543 34579999999999 8
Q ss_pred CCCceeEEEEEEceecCCCC
Q 003728 612 NEATSLGHAEINFVKSDISD 631 (800)
Q Consensus 612 ~~dd~iG~~~i~l~~l~~~~ 631 (800)
+.|++||++.++|.++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999987654
No 68
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=2.3e-17 Score=153.39 Aligned_cols=99 Identities=31% Similarity=0.507 Sum_probs=87.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEE-eC---CCCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-ED---LKDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v-~~---~~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||+..+ .+.+||||++.+. ..+++|++++++.||+|||+|.|.+ +. ....|.|+|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 6899999999999999 8999999999996 3478999999999999999999987 21 35789999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
++++++||++.|+|.++... .....||+|
T Consensus 93 ~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L 121 (122)
T cd08381 93 LVENEFLGGVCIPLKKLDLS---QETEKWYPL 121 (122)
T ss_pred CcCCcEEEEEEEeccccccC---CCccceEEC
Confidence 89999999999999998642 236789988
No 69
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=1.1e-17 Score=153.04 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=87.7
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeccCCCCCCeEeeEEEEEeeCC---CCcEEEEEEEEccC
Q 003728 537 WLLTVALIKGDNLAAVDSS-GFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDG 609 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d~ 609 (800)
|+|+|+|++|++|+..|.. |.+||||+|.+.+ ..++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999988 9999999999843 348999999999999999999977543 35689999999999
Q ss_pred CCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 610 ~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
+++|++||++.+++.++. ....|+++.
T Consensus 81 -~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 81 -FTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred -CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 889999999999999987 346788875
No 70
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.1e-17 Score=151.06 Aligned_cols=104 Identities=27% Similarity=0.426 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--eEEEeeeccCCCCCeeccEEEEEEeCC----CCEEEEEEEec
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-G----R--QRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDE 70 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l-~----~--~~~kTkv~~~t~nP~WnE~f~f~v~~~----~~~L~i~V~D~ 70 (800)
+|+|+|++|++|+..+ .|.+||||+|++ + . ++++|+++.+++||+|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999987 489999999998 3 2 357899999999999999999999532 25699999999
Q ss_pred CCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCC
Q 003728 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNK 109 (800)
Q Consensus 71 d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~ 109 (800)
+..+++++||++.+|+.++...+ ....|++|.++..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCccc
Confidence 98778999999999999997533 3678999987643
No 71
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=2.5e-17 Score=153.95 Aligned_cols=106 Identities=26% Similarity=0.469 Sum_probs=93.4
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEcc
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 608 (800)
...+.|+|+|++|+||+.+|..|.+||||++.+.. +.++|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 34577999999999999999999999999999742 348999999999999999999987542 2458999999999
Q ss_pred CCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 609 ~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
. ++++++||++.+++.++..+...+.|++|+
T Consensus 93 ~-~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 R-FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred C-CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9 889999999999999998888889999986
No 72
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.73 E-value=9.3e-17 Score=156.12 Aligned_cols=119 Identities=29% Similarity=0.477 Sum_probs=101.5
Q ss_pred EEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeccCCCCCeecc
Q 003728 2 KLVVRVIEARNIPAMD------------------------------QNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEE 50 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d------------------------------~~g~~DPyv~v~l~~~~-~kTkv~~~t~nP~WnE 50 (800)
+|+|+|++|++|+++| ..|.+||||++++++.+ .+|+++.++.||.|||
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE 87 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNE 87 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccce
Confidence 5899999999999987 34678999999998765 6999999999999999
Q ss_pred EEEEEEeCCCCEEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 51 EFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 51 ~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
+|.|.+......|.|.|||++.++ +++||++.+|+.++.. +...+.||+|.+..++. .+..|+|+|++.|
T Consensus 88 ~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~---g~~~~~w~~L~~~~~~~-~~~~~~l~v~~~f 157 (158)
T cd04015 88 SFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS---GEPVEGWLPILDSNGKP-PKPGAKIRVSLQF 157 (158)
T ss_pred EEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccC---CCCcceEEECcCCCCCC-CCCCCEEEEEEEE
Confidence 999999766789999999999864 6899999999999864 23468999998764443 2557999999998
No 73
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=5.1e-17 Score=150.69 Aligned_cols=113 Identities=32% Similarity=0.485 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCce
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~ 78 (800)
|.|+|++|++|+..+..+.+||||++.++ ..+.+|++++++.||+|||+|.|.+.. ....|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999999888999999999996 357899999999999999999999954 346799999999998 8999
Q ss_pred eEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 79 lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
||++.+++.++.. +.....|++|.+. ..|+|++++.+.
T Consensus 81 iG~~~~~l~~l~~---g~~~~~~~~L~~~-------~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKL---GEKVRVTFSLNPQ-------GKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCC---CCcEEEEEECCCC-------CCceEEEEEEee
Confidence 9999999999864 2346889999854 369999988763
No 74
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=3.3e-17 Score=152.86 Aligned_cols=114 Identities=21% Similarity=0.356 Sum_probs=95.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCC--Cc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN-GKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE--AT 615 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~--dd 615 (800)
|+|+|++|++|+.++..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. .+.|.|+|||++. +++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 89999999999999999999999999996 556999999999999999999998754 6799999999998 664 57
Q ss_pred eeEEEEEEceecCCCC-ceeEEEECCccCc---CccccceEEEE
Q 003728 616 SLGHAEINFVKSDISD-LADVWIPLQGKLA---QACQSKLHLRI 655 (800)
Q Consensus 616 ~iG~~~i~l~~l~~~~-~~~~w~~L~~k~~---~~~~G~l~l~~ 655 (800)
+||++.+++.++.... ....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999986544 3478999975332 23366766654
No 75
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=5.5e-17 Score=149.49 Aligned_cols=113 Identities=31% Similarity=0.506 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
|+|+|++|++|+..+..|.+||||++.+++.. ++|+++.+++||.|||+|.|.+.....+.|.|+|||++. .+++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 58999999999999999999999999997654 899999999999999999998876667889999999998 7899999
Q ss_pred EEEEEEceecCCCCceeEEEECCccCcCccccceEE
Q 003728 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHL 653 (800)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l 653 (800)
|++.+++.++..+...+.|++|.++++ ...|.|.|
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~-~~~~~~~~ 114 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGG-GKLGAVFL 114 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCC-ccCceEEc
Confidence 999999999988888899999987643 34565543
No 76
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.72 E-value=3.8e-17 Score=153.01 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=90.8
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||++++.. |.+||||++.+.+ .++||++++++.||+|||+|.|.+... ...|.|.|||.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 689999999999999875 8999999999952 368999999999999999999998442 4799999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEcc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~ 105 (800)
++++++||++.|+|.++...+.......||+|.
T Consensus 96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 899999999999999996544455678999983
No 77
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=5.7e-17 Score=154.20 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=90.1
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEE-ecCCCC
Q 003728 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~-D~d~~~ 74 (800)
+|.|+|++|+||++.+ ..|.+||||++++.. .++||+++++++||+|||+|.|.+......|.|+|| |++.+.
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~ 109 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD 109 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 6899999999999874 578899999999943 378999999999999999999999866789999999 688888
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
++++||++.|+|+++... .....||+|.+..
T Consensus 110 ~~~~iG~~~i~L~~l~~~---~~~~~Wy~L~~~~ 140 (146)
T cd04028 110 KKVFMGVAQILLDDLDLS---NLVIGWYKLFPTS 140 (146)
T ss_pred CCceEEEEEEEcccccCC---CCceeEEecCCcc
Confidence 899999999999998432 2357899999764
No 78
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=7.5e-17 Score=150.59 Aligned_cols=118 Identities=21% Similarity=0.300 Sum_probs=100.1
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCC
Q 003728 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTCNG--KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~~--~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 613 (800)
|.|+|+|++|+||+..+. .|.+||||++.+++ ..++|+++.+++||.|||.|.|.+. ...+.|.|+|||++. .++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 679999999999997664 56799999999988 6699999999999999999999876 457899999999998 789
Q ss_pred CceeEEEEEEceecCCCCcee-EEEECCccCcCccccceEEEEEEe
Q 003728 614 ATSLGHAEINFVKSDISDLAD-VWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 614 dd~iG~~~i~l~~l~~~~~~~-~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
|++||++.+++.++..+...+ .|.+|.. +....|+|++++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--~~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR--NGKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhc--CCccceEEEEEEEeC
Confidence 999999999999998776664 4556643 233579999999874
No 79
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.71 E-value=6.4e-17 Score=146.52 Aligned_cols=102 Identities=29% Similarity=0.487 Sum_probs=91.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeEe
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
|.|+|++|+||+..+..+.+||||++++++++++|+++.++.||+|||+|.|.+.+. ...|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 789999999999998889999999999999999999999999999999999999653 5789999999986 789999
Q ss_pred EEeeCccccccCCCCCccEEEEcccCC
Q 003728 82 LKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 82 v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
+.++|.++...+ +...+.||+|.+++
T Consensus 79 ~~i~l~~l~~~~-~~~~~~w~~L~~~g 104 (105)
T cd04050 79 LTLPLSELLKEP-DLTLDQPFPLDNSG 104 (105)
T ss_pred EEEEHHHhhccc-cceeeeeEecCCCC
Confidence 999999997643 33468999998653
No 80
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=6.3e-17 Score=147.83 Aligned_cols=104 Identities=37% Similarity=0.684 Sum_probs=92.4
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeeeccCCCCCee-ccEEEEEEeCC---CCEEEEEEEecCCCCCCc
Q 003728 3 LVVRVIEARNIPAMDQ-NGYSDPYVRLQLGRQRFKTKVVRKSLSPSW-EEEFSFKVEDL---KDELVISVLDEDKYFNDD 77 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~-~g~~DPyv~v~l~~~~~kTkv~~~t~nP~W-nE~f~f~v~~~---~~~L~i~V~D~d~~~~d~ 77 (800)
|.|+|++|+||+.++. .+.+||||++.+++.+.+|+++++++||.| ||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 688999999999999999999999999999 99999999542 478999999999989999
Q ss_pred eeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 78 ~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
+||++.+++.++...+.......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999986443445789999974
No 81
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=5e-17 Score=152.09 Aligned_cols=105 Identities=27% Similarity=0.460 Sum_probs=89.7
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCC---CCcEEEEEEE
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVY 605 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~ 605 (800)
...+.|+|+|++|+||+..+..+.+||||+|.+.+ ..++|+++++++||+|||+|.|.+... ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 34577999999999999999999999999999864 458999999999999999999975432 3568999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
|+|. ++.+++||++.++|.+. .......||+|+
T Consensus 93 d~~~-~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDR-DGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred eCCC-CCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 9998 88999999999999983 334457899985
No 82
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.71 E-value=4.9e-17 Score=152.26 Aligned_cols=106 Identities=25% Similarity=0.372 Sum_probs=90.3
Q ss_pred CCCeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEE
Q 003728 534 GDGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVY 605 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~ 605 (800)
...+.|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++++||+|||+|.|.+... ....|.|.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 3457899999999999999975 999999999974 2247999999999999999999987543 2458999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCC---ceeEEEECC
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISD---LADVWIPLQ 640 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~---~~~~w~~L~ 640 (800)
|++. ++++++||++.|+|.++.... ....||+|.
T Consensus 92 ~~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9998 899999999999999986543 457899983
No 83
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=5e-17 Score=147.68 Aligned_cols=97 Identities=23% Similarity=0.382 Sum_probs=81.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~----~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~ 74 (800)
+|.|+|++|+||+ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|.++. ....|.++|||+|+++
T Consensus 15 ~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs 91 (118)
T cd08677 15 ELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFS 91 (118)
T ss_pred EEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCC
Confidence 7999999999998 346799999999964 57899999999999999999999943 2478999999999999
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEc
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
++++||++.+++.++.... ....|..|
T Consensus 92 ~~d~IG~v~l~l~~~~~~~---~~~~W~~~ 118 (118)
T cd08677 92 RHSTLGELRLKLADVSMML---GAAQWVDL 118 (118)
T ss_pred CCceEEEEEEccccccCCc---cccchhcC
Confidence 9999999999999873211 24567654
No 84
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=9.6e-17 Score=150.22 Aligned_cols=107 Identities=25% Similarity=0.472 Sum_probs=93.4
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeEeeccCCCCCCeEeeEEEEEeeCC---CCcEEEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC---NGKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYD 606 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~---~~~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 606 (800)
+.....|+|+|++|+||+..|..|.+||||++.+ +++.++|+++++++||.|||+|.|.+... ....|.++|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 3455789999999999999999999999999998 34458999999999999999999974321 23579999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
+|. ++++++||++.+++.++..+...+.|++|.
T Consensus 92 ~d~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDR-FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCC-CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 998 889999999999999999888889999985
No 85
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=1.1e-16 Score=146.87 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=85.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCce
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
+.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||+|.|.+.. ....|.|+|||+|. + .||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd~-~-~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKGL-I-WDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCCC-c-CCCc
Confidence 46999999999997755 4689999999999999999987 599999999997754 45669999999997 5 8999
Q ss_pred eEEEEEEceecCCCCce--eEEEECCcc
Q 003728 617 LGHAEINFVKSDISDLA--DVWIPLQGK 642 (800)
Q Consensus 617 iG~~~i~l~~l~~~~~~--~~w~~L~~k 642 (800)
||++.|+|.++..++.. .+||+|++.
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecChH
Confidence 99999999998866555 899999853
No 86
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.70 E-value=9.3e-17 Score=150.74 Aligned_cols=107 Identities=31% Similarity=0.422 Sum_probs=93.4
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVY 605 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~ 605 (800)
....+.|+|+|++|+||+..+..+.+||||++.+. ...++|+++++++||+|||+|.|.+... ....|.|.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 34457899999999999999999999999999985 3458999999999999999999987543 2468999999
Q ss_pred EccCCC--CCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 606 DFDGPF--NEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 606 D~d~~~--~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
|++. + +++++||++.+++.++..+...+.|++|.
T Consensus 92 ~~~~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKS-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCc-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9987 5 68999999999999998888889999984
No 87
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=9.3e-17 Score=153.95 Aligned_cols=103 Identities=22% Similarity=0.405 Sum_probs=89.1
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeC-CCCcEEEEE
Q 003728 539 LTVALIKGDNLAAVDSSG--------------FCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-EPPSMLDVE 603 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g--------------~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~-~~~~~L~v~ 603 (800)
|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+.. ...+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998554 78999999999999999999999999999999998743 445789999
Q ss_pred EEEccCCCCCCceeEEEEEEceecCCCCc-------eeEEEECCcc
Q 003728 604 VYDFDGPFNEATSLGHAEINFVKSDISDL-------ADVWIPLQGK 642 (800)
Q Consensus 604 V~D~d~~~~~dd~iG~~~i~l~~l~~~~~-------~~~w~~L~~k 642 (800)
|||+|. .++|++||++.+++.++...+. ...|+.|.+.
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999 8899999999999998866442 2567777654
No 88
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=1.1e-16 Score=150.21 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=89.7
Q ss_pred cCCCeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeeeEeeccCCCCCCeEeeEEEEE-eeCC--CCcEEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYD-AMDE--PPSMLDVEVY 605 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~---~~~~~T~v~~~t~nP~WnE~f~f~-~~~~--~~~~L~v~V~ 605 (800)
......|+|+|++|+||+..+.. |.+||||++.+. .++++|+++++++||.|||+|.|. +... ....|.|+||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 34557899999999999999886 999999999974 334799999999999999999993 3221 2347999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCC--CceeEEEECC
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDIS--DLADVWIPLQ 640 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~--~~~~~w~~L~ 640 (800)
|+|. +++|++||++.|+|.++... +....|++|.
T Consensus 92 d~d~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDR-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCC-CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999 89999999999999998655 5568899985
No 89
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.70 E-value=6.3e-17 Score=149.71 Aligned_cols=103 Identities=19% Similarity=0.307 Sum_probs=88.3
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCC-CCcEEEEEEEEcc
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE-PPSMLDVEVYDFD 608 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d 608 (800)
..+.|.|+|++|+||++++ .|.+||||++.+.. .+++|+++++++||.|||+|.|.+..+ ....|.|.|||+|
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3567999999999999999 88999999999753 247899999999999999999987442 2356899999999
Q ss_pred CCCC-CCceeEEEEEEceecCCCCceeEEEEC
Q 003728 609 GPFN-EATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 609 ~~~~-~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
. .. .+++||.+.|++.++..+...+.||.|
T Consensus 89 ~-~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 S-KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred C-CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 8 55 478999999999999877777999987
No 90
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.69 E-value=2.7e-16 Score=146.19 Aligned_cols=113 Identities=36% Similarity=0.662 Sum_probs=98.4
Q ss_pred EEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAMDQ------NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~------~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~ 74 (800)
.|+|+|++|+||+..+. .|.+||||++.++++..+|++++++.||.|||+|.|.+.+ ....|.|+|||++..
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~- 80 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD- 80 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-
Confidence 48999999999998875 3689999999999999999999999999999999999953 468999999999987
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
++++||++.+++.++... .....||+|.+. ..|+|+|.+.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~-------~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKK---GFIDEWLPLEDV-------KSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhccc---CccceEEECcCC-------CCceEEEEEeC
Confidence 899999999999998752 246799999853 46999998764
No 91
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.69 E-value=1.2e-16 Score=149.46 Aligned_cols=101 Identities=31% Similarity=0.453 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||++++.. |.+||||++.+.+ .+++|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 699999999999999875 8899999999952 35899999999999999999999843 24689999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEcc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~ 105 (800)
++++++||++.|+|.++... .....||+|+
T Consensus 96 ~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 96 LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 89999999999999998543 2457899985
No 92
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=1.2e-16 Score=146.15 Aligned_cols=101 Identities=22% Similarity=0.395 Sum_probs=88.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCC----CcEEEEEEEEccCCC
Q 003728 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEP----PSMLDVEVYDFDGPF 611 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~----~~~L~v~V~D~d~~~ 611 (800)
.+.|+|+|++|++|+ .|.+||||++++++++++|+++++++||.|||+|.|.+.... ...|.|+|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-L 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-c
Confidence 367999999999998 578999999999999999999999999999999999875432 3579999999998 8
Q ss_pred CCCceeEEEEEEceecCCCCc---eeEEEECCc
Q 003728 612 NEATSLGHAEINFVKSDISDL---ADVWIPLQG 641 (800)
Q Consensus 612 ~~dd~iG~~~i~l~~l~~~~~---~~~w~~L~~ 641 (800)
++|++||++.++|+++..+.. ...|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 889999999999999876644 478999963
No 93
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.69 E-value=1.5e-16 Score=148.70 Aligned_cols=105 Identities=26% Similarity=0.356 Sum_probs=94.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCC-CCCCeEeeEEEEEeeCC---CCcEEEEEEEEccCCCC
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDGPFN 612 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~-t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d~~~~ 612 (800)
|.|+|+|++|++|+..+..+++||||++.++++.++|+++.+ ++||.|||+|.|.+... ....|.|+|||++. ++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 469999999999999999999999999999988888888874 99999999999988665 25689999999998 88
Q ss_pred CCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 613 EATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
.|++||++.+++.++..++..+.|++|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999999888888999999864
No 94
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.69 E-value=2e-16 Score=147.54 Aligned_cols=107 Identities=28% Similarity=0.427 Sum_probs=93.6
Q ss_pred cCCCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~---~~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 606 (800)
....+.|+|+|++|+||+.++ ..|.+||||++++. .+.++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 345577999999999999998 68899999999973 3348899999999999999999987543 23579999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
++. .+.+++||++.++|.++......+.|++|+
T Consensus 90 ~~~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDR-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCc-CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998 788999999999999999988889999996
No 95
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=9.4e-17 Score=150.27 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeccC-CCCCCeEeeEEEEEeeCCC----CcEEEEEEEEccCCCC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKF-QQCDPMWNEIFEYDAMDEP----PSMLDVEVYDFDGPFN 612 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-~~~~T~v~~-~t~nP~WnE~f~f~~~~~~----~~~L~v~V~D~d~~~~ 612 (800)
|+|+|++|++|+..+..+++||||+|++++ +.++|++.. ++.||.|||.|.|.+.... ...|.|+|||++. ++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~~ 80 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-SL 80 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-CC
Confidence 899999999999999999999999999988 778888875 6899999999999886552 5789999999998 78
Q ss_pred CCceeEEEEEEceecCCCCc-----eeEEEECCccCcCccccceEE
Q 003728 613 EATSLGHAEINFVKSDISDL-----ADVWIPLQGKLAQACQSKLHL 653 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~~-----~~~w~~L~~k~~~~~~G~l~l 653 (800)
.|++||++.+++.++..+.. ...|++|..+. ....|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~-g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS-GKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC-CCcCeEEeC
Confidence 99999999999999876654 37899998754 345677764
No 96
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.2e-16 Score=151.34 Aligned_cols=107 Identities=26% Similarity=0.499 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEe--CCCCEEEE
Q 003728 2 KLVVRVIEARNIPAMDQNG--------------YSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVI 65 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g--------------~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~--~~~~~L~i 65 (800)
+|.|+|++|++|+.++..+ .+||||+|.+++++.+|++++++.||+|||+|.|.+. .....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999988553 6899999999999999999999999999999999973 34679999
Q ss_pred EEEecCCCCCCceeEeEEeeCccccccCCC----CCccEEEEcccCC
Q 003728 66 SVLDEDKYFNDDFVGFLKIPVSRVFDADNK----SLPTAWHSLQPKN 108 (800)
Q Consensus 66 ~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~----~~~~~w~~L~~~~ 108 (800)
+|||+|..++|++||++.+++.++...+.. ..++.|+.|+...
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 999999988999999999999998754321 2467999998653
No 97
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=8.6e-16 Score=143.97 Aligned_cols=118 Identities=27% Similarity=0.420 Sum_probs=100.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCc
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDD 77 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~ 77 (800)
.|.|+|++|++|+..+.++.+||||++.+++ ...+|++++++.||.|||+|.|.+.. ....|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999999999999999999864 35899999999999999999999955 3578999999999988899
Q ss_pred eeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 78 ~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
+||++.++|..+...+++.....|++|.+ .|+|+|.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~---------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT---------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC---------CCeEEEEEEEeee
Confidence 99999999998754332445678999973 4899999998643
No 98
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=6.3e-16 Score=145.11 Aligned_cols=116 Identities=22% Similarity=0.391 Sum_probs=100.5
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCCCCceeEeEE
Q 003728 7 VIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDFVGFLK 83 (800)
Q Consensus 7 Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~~d~~lG~v~ 83 (800)
|++|++|+. ..+.+||||++.+++.+++|++++++.||+|||+|.|.+.. ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 67899999999999999999999999999999999999953 3689999999999988999999999
Q ss_pred eeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCC
Q 003728 84 IPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (800)
Q Consensus 84 i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~~~ 130 (800)
+++.++... .....|++|.+..+. ...|+|+++++|.+...
T Consensus 80 ~~l~~l~~~---~~~~~~~~L~~~~~~---~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 80 VSLQDLVSE---GLLEVTEPLLDSNGR---PTGATISLEVSYQPPDG 120 (127)
T ss_pred EEhhHcccC---CceEEEEeCcCCCCC---cccEEEEEEEEEeCCCC
Confidence 999998752 346789999865543 35799999999987533
No 99
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.9e-16 Score=145.74 Aligned_cols=119 Identities=24% Similarity=0.394 Sum_probs=99.3
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCce
Q 003728 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~~--~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~ 78 (800)
.|.|+|++|++|+..+ ..+.+||||++.+++ ...+|+++.++.||.|||.|.|.+.+....|.|+|||++..++|++
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~ 82 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCce
Confidence 5899999999999765 346799999999987 7899999999999999999999998667899999999999889999
Q ss_pred eEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 79 lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
||++.+++.++..... ....|+.|... .+..|+|+++++|.|
T Consensus 83 iG~~~~~l~~l~~~~~--~~~~~~~~~~~-----~k~~G~i~~~l~~~p 124 (124)
T cd04044 83 IGTAEFDLSSLLQNPE--QENLTKNLLRN-----GKPVGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEHHHhccCcc--ccCcchhhhcC-----CccceEEEEEEEeCC
Confidence 9999999999975332 22345555432 256799999999964
No 100
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.68 E-value=1.8e-16 Score=147.87 Aligned_cols=105 Identities=28% Similarity=0.407 Sum_probs=91.4
Q ss_pred CCCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEE
Q 003728 534 GDGWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVY 605 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~ 605 (800)
...+.|+|+|++|+||+..+ ..|.+||||++.+.. ..++|+++++++||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 34577999999999999998 788999999998731 348999999999999999999987543 2458999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEEC
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
|+|. ++++++||++.+++.++..+...+.||+|
T Consensus 91 d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 9998 88999999999999999877777999987
No 101
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=2.7e-16 Score=145.79 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=91.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCc
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 615 (800)
|+|+|+|++|++|+..+..|.+||||++.++++. .+|+++.++.||.|||+|.|.+... .+.|.|+|||++. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCC-CCCCC
Confidence 5799999999999999999999999999998754 8999999999999999999976544 5789999999999 88999
Q ss_pred eeEEEEEEceecCCCCceeEEEECCcc
Q 003728 616 SLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 616 ~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
+||++.+++.++... ..+.||.|...
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 999999999998876 55778877654
No 102
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.68 E-value=3.3e-16 Score=146.31 Aligned_cols=101 Identities=27% Similarity=0.388 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~-~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||++.+. .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 68999999999998865 57899999999952 35899999999999999999999943 24689999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEcc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~ 105 (800)
++++++||++.|++.++... .....||+|.
T Consensus 96 ~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 99999999999999998643 3468999984
No 103
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.68 E-value=4.4e-17 Score=186.52 Aligned_cols=351 Identities=29% Similarity=0.351 Sum_probs=305.2
Q ss_pred CCccccceecccceeEeehhHHHHHhhheehcccCCCcccceecCCCCchhhhhhhhhhhhhhccchhHHHHHHHHHHhh
Q 003728 443 QSDWKLAVHYFANFTVVSSFFMGIYVLIHIWLATSTTIQGLEFVGLDLPDSIGEFIVCGVLVLQGERFLQLISRFMQARK 522 (800)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~~~d~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 522 (800)
..+|+....++....++......+++.++...+.+...+|..+.++++|+..+...-...++....+..-...++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~ 82 (590)
T KOG1032|consen 3 HMQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKL 82 (590)
T ss_pred cccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCcccccccccccccccccccccc
Confidence 34566667778888888888888999999999999999999999999999999998888787777777777777777777
Q ss_pred hcCCCCCccccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEE
Q 003728 523 QKGSDHGVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDV 602 (800)
Q Consensus 523 ~~~~d~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v 602 (800)
..+..++.+....++......+.+.++.....++.++||..+.+.+......+...+.+|.|++.+.|....-+-....|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~v 162 (590)
T KOG1032|consen 83 HKGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVV 162 (590)
T ss_pred CCCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeE
Confidence 77888888888899998899999999999888889999999999999999999999999999999999765555567888
Q ss_pred EEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEecCCCCcchhhhhhhhhhhcccc--
Q 003728 603 EVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKGSNVVKEYLTKMEKEVGKK-- 680 (800)
Q Consensus 603 ~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~~~~~~~~~~~~l~k~ek~vgkk-- 680 (800)
..++++..+.+..-.|.+...+.-- .......|..|.++.+....-+++++..+..++.+.....++...++.++.+
T Consensus 163 Ipf~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~ 241 (590)
T KOG1032|consen 163 IPFDEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQ 241 (590)
T ss_pred EeeeeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccc
Confidence 8888887566666677777666544 5566789999998888777778889989998888888899999999988777
Q ss_pred ccccCCCcccccccccCCCccceeeecccceeeeecccccceeeecceeEEeccCCCceeEEEEEccccceEEEcCCccc
Q 003728 681 INLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLS 760 (800)
Q Consensus 681 ~~~~sr~~n~~f~~~F~lp~~E~l~~~~~c~l~~~~~~~G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~k~~~~~~ 760 (800)
-.....+.++.++..|.+|.+|.+...|+|.+.+..+++|+++++....||++.+||..+++..+|+++..++.......
T Consensus 242 ~~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~ 321 (590)
T KOG1032|consen 242 GNVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWK 321 (590)
T ss_pred cccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeecccccccccccccccc
Confidence 35677788899999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cCCCCeEEEEEecCCccccCCCCccCCCCCcccc
Q 003728 761 SMGSPVIVMTLRQGRGMDARHGAKTQDEEGQSWH 794 (800)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (800)
..+.+....++..++|++|.+|.|..+.+|+..+
T Consensus 322 ~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l 355 (590)
T KOG1032|consen 322 GPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTL 355 (590)
T ss_pred CCCccceeEeccCCccCCCcCCCccccccceeeE
Confidence 6667779999999999999999999988888654
No 104
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.68 E-value=2.1e-16 Score=146.77 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=90.7
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C----eeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEV 604 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~----~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V 604 (800)
....+.|.|+|++|+||++.+..|.+||||++.+- . .+++|+++++++||+|||+|.|++..+ ....|.|.|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 33457799999999999999989999999999952 1 358999999999999999999987543 356899999
Q ss_pred EEccCCCCCCceeEEEEEEceecCCCC-ceeEEEEC
Q 003728 605 YDFDGPFNEATSLGHAEINFVKSDISD-LADVWIPL 639 (800)
Q Consensus 605 ~D~d~~~~~dd~iG~~~i~l~~l~~~~-~~~~w~~L 639 (800)
||+|. ++++++||.+.|+|.++.... ....||+|
T Consensus 90 ~~~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EeCCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99998 899999999999999986554 46789876
No 105
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=2.4e-16 Score=147.49 Aligned_cols=116 Identities=21% Similarity=0.374 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeecc-CCCCCeeccEEEEEEeCC-----CCEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVR-KSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkv~~-~t~nP~WnE~f~f~v~~~-----~~~L~i~V~D~d~~~ 74 (800)
+|+|+|++|++|+..+..+.+||||++++++ ++.+|+++. ++.||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999988 889999986 489999999999999655 589999999999888
Q ss_pred CCceeEeEEeeCccccccCCC--CCccEEEEcccCCCCCCCCcceEEEE
Q 003728 75 NDDFVGFLKIPVSRVFDADNK--SLPTAWHSLQPKNKKSKNKDCGEILL 121 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~--~~~~~w~~L~~~~~~~~~~~~G~I~L 121 (800)
++++||++.+++.++...... .....||.|....+ +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g----~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG----KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC----CcCeEEeC
Confidence 899999999999999864321 13578999997653 56788864
No 106
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=2.7e-16 Score=153.39 Aligned_cols=106 Identities=23% Similarity=0.388 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeCC---CCcEEEEEEEE
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYD 606 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 606 (800)
..+.|+|+|++|+||+..|..|.+||||++.+. ...++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 457899999999999999999999999999872 2458999999999999999999975321 24579999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECCc
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 641 (800)
+|. +++|++||++.+++.++......+.|+.|.+
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999 8899999999999999987777899999964
No 107
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.67 E-value=8e-16 Score=147.45 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=96.3
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeEeeccCCCCCCeEeeEEEEEeeCCC--------CcEEEEE
Q 003728 539 LTVALIKGDN--LAAVDSSGFCDPYVVFTC--N---GKSRTSSIKFQQCDPMWNEIFEYDAMDEP--------PSMLDVE 603 (800)
Q Consensus 539 L~V~vi~a~~--L~~~d~~g~sDPYv~v~~--~---~~~~~T~v~~~t~nP~WnE~f~f~~~~~~--------~~~L~v~ 603 (800)
..++|..|++ |++.+..+.+||||++.+ + .++.+|+++++|+||+|||+|.|.+.... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455555555 888888899999999986 2 34599999999999999999999884431 3469999
Q ss_pred EEEccCCC-CCCceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEec
Q 003728 604 VYDFDGPF-NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNN 659 (800)
Q Consensus 604 V~D~d~~~-~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~~ 659 (800)
|||++. + .+|++||++.++|..+........|++|.. +....+|+|++++.+-.
T Consensus 84 V~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecC
Confidence 999997 5 579999999999999987766778999873 23467899999999754
No 108
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=3.1e-16 Score=149.68 Aligned_cols=92 Identities=32% Similarity=0.490 Sum_probs=84.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCce
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
|.|+|+|++|+||+..|. +.+||||++.++++..+|+++++++||.|||+|.|.+... ...|.|+|||+|. ++.|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCC-CCCCCE
Confidence 679999999999999997 8999999999999999999999999999999999987655 7889999999999 899999
Q ss_pred eEEEEEEceecCCCC
Q 003728 617 LGHAEINFVKSDISD 631 (800)
Q Consensus 617 iG~~~i~l~~l~~~~ 631 (800)
||++++++.++....
T Consensus 79 iG~a~i~l~~l~~~~ 93 (145)
T cd04038 79 MGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEHHHhhhhh
Confidence 999999998876543
No 109
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.67 E-value=2.8e-16 Score=150.91 Aligned_cols=100 Identities=28% Similarity=0.512 Sum_probs=87.8
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeEeeccCCCCCCeE
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----------------------------SRTSSIKFQQCDPMW 584 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-----------------------------~~~T~v~~~t~nP~W 584 (800)
.+.+.|+|+|++|+||.++|.+|.+||||+|.+... .++|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 356889999999999999999999999999998531 268999999999999
Q ss_pred eeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEEC
Q 003728 585 NEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 585 nE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
||+|.|.+.....+.|.|+|||+| +++||++.+++.++.. ...+.||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999886655678999999986 7899999999999883 456999987
No 110
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.67 E-value=1.4e-15 Score=143.71 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=99.5
Q ss_pred EEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEec
Q 003728 2 KLVVRVIEARNIPAMDQN----------GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE 70 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~----------g~~DPyv~v~l~~~~-~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~ 70 (800)
.|+|+|++|++|+..+.. +.+||||++.+++++ .+|+++.++.||.|||+|.|.+. ....|.|.|||+
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~ 83 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeC
Confidence 589999999999988763 579999999998765 69999999999999999999996 458999999999
Q ss_pred CCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 71 d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
+.++.+++||++.++|.++... .+.....|++|.+ .|+|+|+++|..
T Consensus 84 ~~~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~---------~G~l~l~~~~~~ 130 (132)
T cd04014 84 AAIGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEP---------QGKLHVKIELKG 130 (132)
T ss_pred CCCCCCceEEEEEEEhHHhccc-CCCcccEEEEccC---------CcEEEEEEEEec
Confidence 9888899999999999998753 1234689999972 599999999864
No 111
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=4.2e-16 Score=142.64 Aligned_cols=101 Identities=31% Similarity=0.510 Sum_probs=90.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-----CCEEEEEEEecCCCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYFND 76 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~-----~~~L~i~V~D~d~~~~d 76 (800)
.|+|+|++|++|+ .+.+||||++.+++++++|+++.++.||.|||+|.|.+... ...|.|+|||++.++++
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 5899999999998 57899999999999999999999999999999999998432 36899999999998889
Q ss_pred ceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 77 ~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
++||++.++|+++...........|++|..
T Consensus 81 ~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 81 TLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999987666667889999964
No 112
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.67 E-value=2.4e-17 Score=172.95 Aligned_cols=121 Identities=24% Similarity=0.408 Sum_probs=102.8
Q ss_pred HHHhhhcCCCC-------CccccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeccCCCCCCeEe
Q 003728 518 MQARKQKGSDH-------GVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWN 585 (800)
Q Consensus 518 ~~~~~~~~~d~-------~~~~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~Wn 585 (800)
.....+++.|| .+.++..+..|+|+|.+|+||.++|.+|.|||||.+.+- ..+++|++++.++||+||
T Consensus 154 ~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wN 233 (683)
T KOG0696|consen 154 ENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWN 233 (683)
T ss_pred hcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcccc
Confidence 45567777777 345566778899999999999999999999999999973 223899999999999999
Q ss_pred eEEEEEeeC-CCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 586 EIFEYDAMD-EPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 586 E~f~f~~~~-~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
|+|+|.+.+ +...+|.|+|||||+ -+++||+|...+.++++.. ...+.||.|.
T Consensus 234 Etftf~Lkp~DkdrRlsiEvWDWDr-TsRNDFMGslSFgisEl~K-~p~~GWyKlL 287 (683)
T KOG0696|consen 234 ETFTFKLKPSDKDRRLSIEVWDWDR-TSRNDFMGSLSFGISELQK-APVDGWYKLL 287 (683)
T ss_pred ceeEEecccccccceeEEEEecccc-cccccccceecccHHHHhh-cchhhHHHHh
Confidence 999999844 456789999999999 7999999999999999865 4568899885
No 113
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=4.2e-16 Score=144.21 Aligned_cols=100 Identities=26% Similarity=0.493 Sum_probs=85.4
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--CCCEEEEEEEecCCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~ 73 (800)
.+|.|+|++|+||++++ .|.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|+|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 37999999999999998 78999999999963 36799999999999999999999843 346799999999986
Q ss_pred C-CCceeEeEEeeCccccccCCCCCccEEEEc
Q 003728 74 F-NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 74 ~-~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
. ++++||++.||+.++... .....||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 5 478999999999999632 235799986
No 114
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.66 E-value=4.1e-16 Score=148.00 Aligned_cols=103 Identities=24% Similarity=0.389 Sum_probs=92.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeEeeccCCCCCCeEeeEEEEEeeCC---------------CCcE
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---------------PPSM 599 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~----~~~~~T~v~~~t~nP~WnE~f~f~~~~~---------------~~~~ 599 (800)
|+|+|++|++|+.+ ..|.+||||+|.++ +..++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999998 6669999999999999999999987654 4568
Q ss_pred EEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccC
Q 003728 600 LDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 643 (800)
Q Consensus 600 L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~ 643 (800)
|.|+|||++. ++++++||++.+++.++........|++|..+.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 789999999999999988777789999998653
No 115
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=5.6e-16 Score=144.63 Aligned_cols=107 Identities=17% Similarity=0.343 Sum_probs=91.6
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-C--CeeeEeeccCCCCCCeEeeEEEEE-eeCC--CCcEEEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC-N--GKSRTSSIKFQQCDPMWNEIFEYD-AMDE--PPSMLDVEVYD 606 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~-~--~~~~~T~v~~~t~nP~WnE~f~f~-~~~~--~~~~L~v~V~D 606 (800)
......|.|+|++|+||++.+..|.+||||.+.+ . .++++|+++++ +||+|||+|.|+ +... ....|.|+|||
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 3345679999999999999999999999999875 2 33488999887 999999999997 4322 35679999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECCc
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 641 (800)
+|. ++++++||++.|+|.++..+.....|++|++
T Consensus 91 ~~~-~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 91 VER-MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCC-cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 999 8999999999999999988888899999963
No 116
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=7.1e-16 Score=144.28 Aligned_cols=101 Identities=31% Similarity=0.572 Sum_probs=87.4
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDED 71 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d 71 (800)
.+|.|+|++|+||+..+.++.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 37999999999999999889999999999964 57899999999999999999998633 3578999999999
Q ss_pred CCCCCceeEeEEeeCccccccCCCCCccEEEEcc
Q 003728 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 72 ~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~ 105 (800)
.++++++||++.++|.+... + ....||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~~-~---~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADALL-D---DEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEecccccc-c---CCcceEECc
Confidence 98899999999999998432 2 246899985
No 117
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.66 E-value=5e-16 Score=144.56 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=82.6
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEe-eCCCCcEEEEEEEEccCCCC
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDA-MDEPPSMLDVEVYDFDGPFN 612 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~-~~~~~~~L~v~V~D~d~~~~ 612 (800)
...+.|+|+|++|++|+. +..|.+||||+|.++++.++|+++++++||+|||+|.|.. .....+.|.|+|||+|. ++
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~s 102 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-GW 102 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-CC
Confidence 344789999999999984 7788999999999999999999999999999999999964 33457789999999999 88
Q ss_pred CCceeEEEEEEceecC
Q 003728 613 EATSLGHAEINFVKSD 628 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~ 628 (800)
+|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999998654
No 118
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.66 E-value=2.2e-15 Score=142.33 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEeeeccCCCCCee-ccEEEEEEeCCCCEEEEEE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-------------QRFKTKVVRKSLSPSW-EEEFSFKVEDLKDELVISV 67 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-------------~~~kTkv~~~t~nP~W-nE~f~f~v~~~~~~L~i~V 67 (800)
-..|++++|+||+ ++..|++||||++.+.. ++++|+++++++||+| ||+|.|.+. ....|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4678999999998 77789999999999942 3689999999999999 999999994 457899999
Q ss_pred EecCCCCC---CceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEE
Q 003728 68 LDEDKYFN---DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (800)
Q Consensus 68 ~D~d~~~~---d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l 123 (800)
||++..+. +++||++.+|+.++...+.......||+|..++.. ..+.|+|.|.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~--s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPT--DHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCC--CcEEEEEEEEe
Confidence 99875333 79999999999999876555557789999987743 47889999876
No 119
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=5.4e-16 Score=141.93 Aligned_cols=99 Identities=29% Similarity=0.581 Sum_probs=87.1
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~---~~~~kTkv~~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d~~ 73 (800)
.|+|+|++|++|+..+.. +.+||||++.+. ....+|+++++++||+|||+|.|.+.. ....|.++|||++.+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 589999999999999988 899999999984 346899999999999999999998843 347899999999999
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
++|++||++.+++.++.. ...|++++.
T Consensus 82 ~~dd~lG~~~i~l~~l~~------~~~~~~~~~ 108 (111)
T cd04041 82 TADDRLGRVEIDLKELIE------DRNWMGRRE 108 (111)
T ss_pred CCCCcceEEEEEHHHHhc------CCCCCcccc
Confidence 999999999999999963 457888763
No 120
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.65 E-value=9.2e-16 Score=143.34 Aligned_cols=101 Identities=30% Similarity=0.572 Sum_probs=89.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~~ 75 (800)
+|.|+|++|+||++.+..|.+||||++.+. ....+|++++++.||+|||+|.|.+... ...|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 96 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSR 96 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCC
Confidence 589999999999999999999999999994 3468999999999999999999998432 4689999999999889
Q ss_pred CceeEeEEeeCccccccCCCCCccEEEEcc
Q 003728 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~ 105 (800)
+++||++.+++.++...+ ....||+|+
T Consensus 97 ~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 97 DECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred CceeEEEEEecccccCCC---CcceEEECc
Confidence 999999999999996433 468899996
No 121
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.65 E-value=7e-16 Score=143.29 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~------~~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||++.+..+.+||||++.+. ..+++|++++++.||+|||+|.|++.. ....|.|+|||++.
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 699999999999999888899999999984 247899999999999999999999954 35799999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
++++++||++.|+|.++...+ .....||+|
T Consensus 95 ~~~~~~lG~~~i~L~~~~~~~--~~~~~Wy~l 124 (124)
T cd08680 95 DQQEECLGGAQISLADFESSE--EMSTKWYNL 124 (124)
T ss_pred CCceeEEEEEEEEhhhccCCC--ccccccccC
Confidence 899999999999999984322 135789876
No 122
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.65 E-value=7.1e-16 Score=176.64 Aligned_cols=154 Identities=25% Similarity=0.328 Sum_probs=137.2
Q ss_pred ceeeeEEecChhhhhccccCCCCcccHHHHHhcCCcceeeecccccCCCCceEEEEEEEeecCCCC--ceeEEeEEEEEE
Q 003728 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLI--KATKGFEEQTYL 331 (800)
Q Consensus 254 ~l~d~~~~~~~~~~~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~sy~~~~~~~~--k~~~~~e~q~~~ 331 (800)
++.+..+.++++.+|+++|+ |+.|...+.+.++.++++..+|.....+ ...|.++|++++..++ |++.|.++|++.
T Consensus 279 v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~~-~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~ 356 (590)
T KOG1032|consen 279 VLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRSG-ILLRTLSYTKGLPAKSGPKSTDCEGTQTLH 356 (590)
T ss_pred ccccccccccccccceeecc-CcceeeeccccccccccccccccCCCcc-ceeEeccCCccCCCcCCCccccccceeeEE
Confidence 77888899999999999999 9999999999999999999999887665 8999999999998665 999999999999
Q ss_pred ecCCce-EEEEEEEeCCCCCCCCeEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeeeeeehhhhhccHHHHHHHHHHH
Q 003728 332 KADGKV-FAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQ 410 (800)
Q Consensus 332 ~~~~~~-~~v~~~~~tpdVP~g~~F~v~~~y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~~k~~Ie~~~~~g~~~~~~~ 410 (800)
+.+-.. +-|..++.||+||||++|.|+++|||. |.+.++|+|.++.+|.|++++|.+.|+|.++. +.+..+..
T Consensus 357 ~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~-----~~~~~~~~l~v~~~V~~~~~sw~~~~~~~~~~-~~k~lv~~ 430 (590)
T KOG1032|consen 357 HQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLIS-----RAGSNSCKLKVSTSVEWTKSSWDVPVSEIGSN-TLKDLVEI 430 (590)
T ss_pred eccchhhhhhhheeccCCccccceeeeeEEEEEE-----ecCCcceeecceeEEEeccCchhhcccccccc-chhhHHHH
Confidence 988555 778899999999999999999999999 57779999999999999999999999999986 45454554
Q ss_pred HHHHH
Q 003728 411 FATFL 415 (800)
Q Consensus 411 ~~~~l 415 (800)
+.+.+
T Consensus 431 ~~~~~ 435 (590)
T KOG1032|consen 431 LEKLL 435 (590)
T ss_pred HHHHH
Confidence 44444
No 123
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.65 E-value=1.4e-15 Score=142.12 Aligned_cols=101 Identities=40% Similarity=0.684 Sum_probs=88.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~~ 75 (800)
+|.|+|++|+||+..+..+.+||||++.+.+ ...+|++++++.||+|||+|.|.+.. ....|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~ 96 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK 96 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCC
Confidence 6899999999999999889999999999853 46899999999999999999999843 24689999999999889
Q ss_pred CceeEeEEeeCccccccCCCCCccEEEEcc
Q 003728 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~ 105 (800)
+++||++.+++.++.. +.....|++|.
T Consensus 97 ~~~lG~~~i~l~~~~~---~~~~~~W~~l~ 123 (124)
T cd08385 97 HDLIGEVRVPLLTVDL---GHVTEEWRDLE 123 (124)
T ss_pred CceeEEEEEecCcccC---CCCcceEEEcc
Confidence 9999999999999854 33468999985
No 124
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.65 E-value=1.5e-15 Score=140.28 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEccCCCCCCc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~dd 615 (800)
|+|+|++|+||+.. |.+||||++.++++. ++|+++++ +||.|||+|.|.+... ....|.|.+||.+. .+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999987 789999999999865 79999988 9999999999987653 23568888898887 66676
Q ss_pred eeEEEEEEceecCCCCceeEEEECCccCc-CccccceEEEEEE
Q 003728 616 SLGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFL 657 (800)
Q Consensus 616 ~iG~~~i~l~~l~~~~~~~~w~~L~~k~~-~~~~G~l~l~~~~ 657 (800)
++|.+.|. .+..+...+.|++|.+... ....|+|+|++.|
T Consensus 77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77765554 4445667799999986543 3458999998864
No 125
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.4e-15 Score=142.30 Aligned_cols=103 Identities=34% Similarity=0.627 Sum_probs=89.5
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecCCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkv~~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d~~ 73 (800)
++|.|+|++|+||+..+..+.+||||++.+. ..+.+|++++++.||+|||+|.|.+.+ ....|.++|||++.+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5799999999999999989999999999993 467899999999999999999998522 236799999999998
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
+++++||++.+++.++.. +.....|+.|++
T Consensus 96 ~~~~~iG~~~i~l~~l~~---~~~~~~W~~l~~ 125 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDL---TEEQTFWKDLKP 125 (125)
T ss_pred cCCcEeeEEEEecccccC---CCCcceEEecCC
Confidence 899999999999999864 234689999974
No 126
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.65 E-value=1.4e-15 Score=142.80 Aligned_cols=104 Identities=37% Similarity=0.588 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEE-EeC---CCCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~---~~~~kTkv~~~t~nP~WnE~f~f~-v~~---~~~~L~i~V~D~d~~ 73 (800)
+|.|+|++|+||+..+.. +.+||||++.+. .++.+|++++++.||+|||+|.|. +.. ....|.+.|||++.+
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 699999999999998876 889999999995 346799999999999999999994 432 235799999999999
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
+++++||++.|+|.++...+++ ....|.+|++
T Consensus 97 ~~d~~lG~~~i~L~~l~~~~~~-~~~~~~~~~~ 128 (128)
T cd08388 97 SRDDVIGEVVCPLAGADLLNEG-ELLVSREIQP 128 (128)
T ss_pred CCCceeEEEEEeccccCCCCCc-eEEEEEeccC
Confidence 9999999999999998654333 3678988864
No 127
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=1.4e-15 Score=138.15 Aligned_cols=91 Identities=25% Similarity=0.486 Sum_probs=81.0
Q ss_pred EEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC--CCCEEEEEEEecCCCCC
Q 003728 2 KLVVRVIEARNIPAMDQN----GYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYFN 75 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~----g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~~~ 75 (800)
-|.|+|++|++|++.+.. +.+||||++.+++++++|++++++.||+|||.|.|.+.+ ....|.|+|||++.+++
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~ 81 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSF 81 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCC
Confidence 389999999999987642 358999999999999999999999999999999999844 33589999999999999
Q ss_pred CceeEeEEeeCcccccc
Q 003728 76 DDFVGFLKIPVSRVFDA 92 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~~ 92 (800)
|++||++.++|.++...
T Consensus 82 dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 82 NDYVATGSLSVQELLNA 98 (108)
T ss_pred CcceEEEEEEHHHHHhh
Confidence 99999999999999753
No 128
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.64 E-value=2.5e-15 Score=141.93 Aligned_cols=114 Identities=21% Similarity=0.295 Sum_probs=92.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CeeeEeeccCCCCCCeE-eeEEEEEeeCCCCcEEEEE
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCN-------------GKSRTSSIKFQQCDPMW-NEIFEYDAMDEPPSMLDVE 603 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-------------~~~~~T~v~~~t~nP~W-nE~f~f~~~~~~~~~L~v~ 603 (800)
+.+|++++|+||+ ++..|++||||++.+. ++.++|+++++++||.| ||+|.|.+. ..+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4789999999998 7889999999999984 23589999999999999 999999774 35689999
Q ss_pred EEEccCCCCC---CceeEEEEEEceecCCCC---ceeEEEECCccCc-CccccceEEEE
Q 003728 604 VYDFDGPFNE---ATSLGHAEINFVKSDISD---LADVWIPLQGKLA-QACQSKLHLRI 655 (800)
Q Consensus 604 V~D~d~~~~~---dd~iG~~~i~l~~l~~~~---~~~~w~~L~~k~~-~~~~G~l~l~~ 655 (800)
|||++. .++ +++||++.|++.++..+. ....|++|...+. ...+|.|.+++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999876 333 789999999999986543 2467999985432 23477887765
No 129
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=2.1e-15 Score=140.95 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=93.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCce
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
.|+|+|++|+ |...+..+.+||||+|.++++ .++|+++++++||.|||.|.|.+. ..+.|.|+|||++. .+.|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 4999999999 655666889999999999988 699999999999999999999864 35789999999999 889999
Q ss_pred eEEEEEEceecCCCCc-----eeEEEECCccC--cCccccceEEEE
Q 003728 617 LGHAEINFVKSDISDL-----ADVWIPLQGKL--AQACQSKLHLRI 655 (800)
Q Consensus 617 iG~~~i~l~~l~~~~~-----~~~w~~L~~k~--~~~~~G~l~l~~ 655 (800)
||++.++|.++..... ...|++|...+ .....|+|++++
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999998865433 23589987433 234578888765
No 130
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.3e-15 Score=142.21 Aligned_cols=91 Identities=23% Similarity=0.407 Sum_probs=82.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCc
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS--RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~--~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 615 (800)
+|+|+|++|++|++.|..|++||||++.++++. .+|+++++++||.|||+|.|.+..+....|.|+|||+|. +++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCc
Confidence 489999999999999999999999999999876 578888899999999999998766656789999999999 88999
Q ss_pred eeEEEEEEceecCC
Q 003728 616 SLGHAEINFVKSDI 629 (800)
Q Consensus 616 ~iG~~~i~l~~l~~ 629 (800)
+||++.+++.+...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999987653
No 131
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.63 E-value=2.3e-15 Score=141.25 Aligned_cols=101 Identities=33% Similarity=0.497 Sum_probs=88.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~ 73 (800)
+|.|+|++|+||+..+.++.+||||++.+. ..+++|++++++.||+|||+|.|.+... ...|.|.|||.+.+
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~ 96 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF 96 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc
Confidence 799999999999999998999999999995 4579999999999999999999999432 47899999999875
Q ss_pred --CCCceeEeEEeeCccccccCCCCCccEEEEcc
Q 003728 74 --FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 74 --~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~ 105 (800)
+++++||++.+++.++... .....||+|.
T Consensus 97 ~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 97 LSREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred cCCCCceEEEEEEeccccccc---CCccceEECc
Confidence 6899999999999998542 3468999984
No 132
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=4e-15 Score=141.14 Aligned_cols=117 Identities=14% Similarity=0.288 Sum_probs=97.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCC---
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFN--- 612 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~--- 612 (800)
..|.|.|++|++|++++ ||||.|.++++. .+|+++.++.||.|+|.|.|..... ...|.|.||+.+...+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 34999999999999865 799999999998 6999999999999999999964333 5789999987653122
Q ss_pred CCceeEEEEEEceecCCCCceeEEEECCccCcC---------ccccceEEEEEEec
Q 003728 613 EATSLGHAEINFVKSDISDLADVWIPLQGKLAQ---------ACQSKLHLRIFLNN 659 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~---------~~~G~l~l~~~~~~ 659 (800)
++++||.+.|++.++..+...+.||+|.+..+. ...++||+++.|..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 578999999999999988888999999864433 34689999999874
No 133
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=2.2e-15 Score=140.68 Aligned_cols=102 Identities=34% Similarity=0.491 Sum_probs=88.2
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEE-EeC---CCCEEEEEEEecCCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkv~~~t~nP~WnE~f~f~-v~~---~~~~L~i~V~D~d~~ 73 (800)
.+|.|+|++|+||++.+..+.+||||++.+. .++++|+++++ .||+|||+|.|+ +.. ....|.++|||++.+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 3799999999999999988899999998874 35789999887 999999999998 532 357899999999999
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
+++++||++.|+|+++.. ......||+|++
T Consensus 95 ~~~~~lG~~~i~L~~l~~---~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNL---EGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCC---CCCceEEEeCCC
Confidence 999999999999999954 235789999974
No 134
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=5.7e-15 Score=140.12 Aligned_cols=119 Identities=18% Similarity=0.337 Sum_probs=99.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCC-C---CCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDK-Y---FND 76 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~-~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~-~---~~d 76 (800)
.|.|.|++|++||+++ +|||.+.+++.+ .+|+++.++.||.|+|+|.|.....-..|.|.||+.+. . .++
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCC
Confidence 5899999999999864 799999999987 59999999999999999999875556889999987653 2 257
Q ss_pred ceeEeEEeeCccccccCCCCCccEEEEcccCCCCC------CCCcceEEEEEEEEEec
Q 003728 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS------KNKDCGEILLTISFSHN 128 (800)
Q Consensus 77 ~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~------~~~~~G~I~L~l~~~~~ 128 (800)
++||.+.||+.++.. +...+.||+|.+..+.+ .....+.|++++.|.+.
T Consensus 87 ~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 87 QLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 899999999999963 44578999999876553 13456899999999754
No 135
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.63 E-value=4.6e-16 Score=147.27 Aligned_cols=107 Identities=23% Similarity=0.368 Sum_probs=90.1
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEE
Q 003728 532 AQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEV 604 (800)
Q Consensus 532 ~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V 604 (800)
.....+.|.|+|++|+||++.|..|.+||||+|.+.+ ..++|+++++++||+|||+|.|.+..+ ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 3345678999999999999999999999999999842 248999999999999999999987543 245799999
Q ss_pred EEccCCCCCCceeEEEEEEceecCCCCceeEEEECCc
Q 003728 605 YDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (800)
Q Consensus 605 ~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 641 (800)
||+|. .+++++||++.+++.. .++..+.|+++..
T Consensus 88 ~d~d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDI-GKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCC-CCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99998 7889999999999975 3445578988753
No 136
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.4e-15 Score=137.61 Aligned_cols=99 Identities=25% Similarity=0.416 Sum_probs=85.4
Q ss_pred CCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCC-CC
Q 003728 554 SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI-SD 631 (800)
Q Consensus 554 ~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~-~~ 631 (800)
.+|.+||||+|.++++. ++|++++++.||.|||.|.|.+.+...+.|.|.|||++. + .|++||++.++|.++.. ..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 47899999999998865 899999999999999999998766556789999999998 7 89999999999998854 34
Q ss_pred ceeEEEECCccCcCccccceEEEEEEe
Q 003728 632 LADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 632 ~~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
..+.|++|.+ ...|+|++++.|.
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~ 109 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWK 109 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEe
Confidence 4589999985 2469999998875
No 137
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=4.2e-15 Score=138.86 Aligned_cols=104 Identities=32% Similarity=0.565 Sum_probs=93.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCC----CCEEEEEEEecCCCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL----KDELVISVLDEDKYFND 76 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~-t~nP~WnE~f~f~v~~~----~~~L~i~V~D~d~~~~d 76 (800)
+|.|+|++|++|+..+..+.+||||++.++++.++|+++.+ +.||.|||+|.|.+... ...|.|+|||.+.+.++
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d 81 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDD 81 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCC
Confidence 68999999999999988899999999999999999999885 89999999999999654 47899999999998899
Q ss_pred ceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 77 ~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
++||++.+++.++...+ ..+.|+.|.+..
T Consensus 82 ~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~ 110 (124)
T cd04049 82 DFIGEATIHLKGLFEEG---VEPGTAELVPAK 110 (124)
T ss_pred CeEEEEEEEhHHhhhCC---CCcCceEeeccc
Confidence 99999999999997633 358899999864
No 138
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.61 E-value=4.9e-15 Score=138.15 Aligned_cols=100 Identities=27% Similarity=0.469 Sum_probs=86.9
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 15 SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 6899999999999988 778999999999842 468999999999999999999998542 4689999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
++++++||++.++|.++... .....||+|
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~---~~~~~w~~l 123 (123)
T cd08521 95 FGRNTFLGEVEIPLDSWDLD---SQQSEWYPL 123 (123)
T ss_pred CcCCceeeEEEEeccccccc---CCCccEEEC
Confidence 88999999999999998532 236889987
No 139
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.61 E-value=2.5e-15 Score=139.56 Aligned_cols=98 Identities=26% Similarity=0.291 Sum_probs=87.0
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCee-------eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccC---CCC
Q 003728 543 LIKGDNLAAVDSSGFCDPYVVFTCNGKS-------RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDG---PFN 612 (800)
Q Consensus 543 vi~a~~L~~~d~~g~sDPYv~v~~~~~~-------~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~---~~~ 612 (800)
.++|++|+..|..|++||||+|.+.+.. ++|+++++++||.|||+|.|.+..+..+.|.|+|||+|. .++
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4899999999999999999999986543 899999999999999999998765556789999999994 147
Q ss_pred CCceeEEEEEEceecCCCCceeEEEECC
Q 003728 613 EATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
++++||++.+++.++..+.....|++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999999888888999994
No 140
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.61 E-value=9.9e-15 Score=137.05 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeEeeccCCCC-CCeEeeEEEEEeeCCCCcEEEEEEEEcc
Q 003728 538 LLTVALIKGDNLAAVD--SSGFCDPYVVFTCN------GKSRTSSIKFQQC-DPMWNEIFEYDAMDEPPSMLDVEVYDFD 608 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d--~~g~sDPYv~v~~~------~~~~~T~v~~~t~-nP~WnE~f~f~~~~~~~~~L~v~V~D~d 608 (800)
.|+|+|++|+||+..+ ..+.+||||++++. ...++|+++.++. ||.|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5999999999999988 58899999999983 4458898887775 9999999999887554567999999999
Q ss_pred CCCCCCceeEEEEEEceecCCCCceeEEEECCccCcC-ccccceEEEEEE
Q 003728 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRIFL 657 (800)
Q Consensus 609 ~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~-~~~G~l~l~~~~ 657 (800)
. . ++++||++.+++.++..+ ..|++|..+.+. ...|.|.+++++
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 899999999999998543 578999866554 457899988875
No 141
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=1.4e-14 Score=135.52 Aligned_cols=119 Identities=24% Similarity=0.391 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
+|.|+|++|+ |...+..+.+||||++.++++ ..+|+++.++.||.|||+|.|.+. ....|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6899999998 555555788999999999887 899999999999999999999985 4579999999999988999999
Q ss_pred eEEeeCccccccCCCCCcc--EEEEcccCCCCCCCCcceEEEEEE
Q 003728 81 FLKIPVSRVFDADNKSLPT--AWHSLQPKNKKSKNKDCGEILLTI 123 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~--~w~~L~~~~~~~~~~~~G~I~L~l 123 (800)
++.++|.++...+.+.... .|+.|...+. ......|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENK-GSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCC-CcceeeeeEEEEe
Confidence 9999999998655544443 4888885442 1346789998875
No 142
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.60 E-value=2.8e-15 Score=141.73 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=84.9
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--e---eeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEc
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG--K---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~--~---~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 607 (800)
....|.|+|++|+||+..|..|.+||||++++.. + +++|+++++++||+|||+|.|.+..+ ....|.|+|||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4467999999999999999999999999999732 2 36899999999999999999987542 356799999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
|. ++++++||++.|.... .+...+.|..+.
T Consensus 93 d~-~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 93 TE-DGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred CC-CCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 98 8999999999997653 344456666554
No 143
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.60 E-value=9.9e-15 Score=134.82 Aligned_cols=112 Identities=28% Similarity=0.423 Sum_probs=89.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCCCCCce
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFNDDF 78 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~~d~~ 78 (800)
|.|+|++|+||+.. +.+||||.+.++++ ..+|+++++ .||.|||+|.|.+.+. ...|.|.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999875 479999999 9999999999999652 3578888999887666667
Q ss_pred eEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 79 lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
+|.+.|.. +.. +.....||+|.++... ....|+|+|.+.|
T Consensus 78 ~g~v~l~~--~~~---~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDL---GQGKDEWFPLTPVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCC---CCcceeEEECccCCCC--CCcCceEEEEEEC
Confidence 77655544 322 2346799999987543 3578999999976
No 144
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=7.4e-15 Score=136.18 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=92.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
.|+|+|++|++|+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++.+++|++||
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG 81 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeee
Confidence 4899999999999999889999999999976 468999999999999999999999776789999999999988999999
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCC
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
++.+++.++... ....||.|.+..
T Consensus 82 ~~~~~l~~l~~~----~~~~~~~~~~~~ 105 (120)
T cd04045 82 SVEINVSDLIKK----NEDGKYVEYDDE 105 (120)
T ss_pred EEEEeHHHhhCC----CCCceEEecCCC
Confidence 999999999764 357899998754
No 145
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=5.3e-15 Score=139.63 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=92.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCC-CCcEEEEEEEEcc
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE-PPSMLDVEVYDFD 608 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d 608 (800)
..+.|+|+|++|+||+..+..|.+||||+|.+.+ ..++|+++.++.||.|||+|.|.+... ....|.|+|||++
T Consensus 11 ~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~ 90 (131)
T cd04026 11 KDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD 90 (131)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC
Confidence 3477999999999999999899999999999853 458999999999999999999987543 3568999999999
Q ss_pred CCCCCCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 609 ~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
. +.++++||++.+++.++... ..+.||+|...
T Consensus 91 ~-~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 91 R-TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred C-CCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8 78999999999999998754 67899999743
No 146
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.60 E-value=1.2e-15 Score=144.89 Aligned_cols=105 Identities=24% Similarity=0.349 Sum_probs=88.9
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEc
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 607 (800)
....|.|+|++|+||+..|..|.+||||+|.+. ++ +++|+++++++||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 456799999999999999999999999999973 22 37899999999999999999987532 345799999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
|. ++++++||++.+++.. .+.....|++|...
T Consensus 93 d~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 93 DR-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CC-CCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 99 8999999999999987 34556889988643
No 147
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.60 E-value=4.9e-15 Score=140.16 Aligned_cols=96 Identities=33% Similarity=0.505 Sum_probs=84.4
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeeeccCCCCCeeccEEEEEEeC-----CCCEEEEEEE
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRKSLSPSWEEEFSFKVED-----LKDELVISVL 68 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-------~~~~kTkv~~~t~nP~WnE~f~f~v~~-----~~~~L~i~V~ 68 (800)
.+|.|+|++|++|+..+.++.+||||+|.+. ..+++|+++++++||+|||+|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 3689999999999999988999999999995 347999999999999999999999843 2468999999
Q ss_pred ecCCCCCCceeEeEEeeCccccccCCCC
Q 003728 69 DEDKYFNDDFVGFLKIPVSRVFDADNKS 96 (800)
Q Consensus 69 D~d~~~~d~~lG~v~i~l~~l~~~~~~~ 96 (800)
|++.++++++||++.++|.++...++..
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~~~~ 123 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVEDTS 123 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCcccccc
Confidence 9999888999999999999997544433
No 148
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=5.9e-15 Score=140.10 Aligned_cols=102 Identities=34% Similarity=0.587 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeeeccCCCCCeeccEEEEEEeCC----------------CCE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----RQRFKTKVVRKSLSPSWEEEFSFKVEDL----------------KDE 62 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~----~~~~kTkv~~~t~nP~WnE~f~f~v~~~----------------~~~ 62 (800)
|.|+|++|++|+.+ .++.+||||++.++ ..+++|+++.++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 78899999999998 6789999999999999999999998543 468
Q ss_pred EEEEEEecCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 63 LVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 63 L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
|.|+|||.+.+++++|||++.+++.++... .....||+|.++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCC---CcccceEecCCcC
Confidence 999999999988899999999999998642 2468999999875
No 149
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.59 E-value=4.9e-15 Score=140.16 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=81.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeeeEeeccCCCCCCeEeeEEEEEeeCC----CCcEEEEEE
Q 003728 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-------GKSRTSSIKFQQCDPMWNEIFEYDAMDE----PPSMLDVEV 604 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-------~~~~~T~v~~~t~nP~WnE~f~f~~~~~----~~~~L~v~V 604 (800)
...|+|+|++|++|+..+..|.+||||+|.+. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 45699999999999999999999999999985 2358999999999999999999987542 345899999
Q ss_pred EEccCCCCCCceeEEEEEEceecC
Q 003728 605 YDFDGPFNEATSLGHAEINFVKSD 628 (800)
Q Consensus 605 ~D~d~~~~~dd~iG~~~i~l~~l~ 628 (800)
||+|. +++|++||++.++|.++.
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCC
Confidence 99999 888999999999999876
No 150
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.59 E-value=9.6e-15 Score=136.21 Aligned_cols=102 Identities=30% Similarity=0.554 Sum_probs=88.5
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~---~~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~ 74 (800)
+|.|+|++|+||+..+ ..+.+||||++.+. ....+|++++++.||+|||+|.|.+... ...|.|+|||++..+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~ 94 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFS 94 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCC
Confidence 6899999999999998 68889999999984 3568899999999999999999998432 468999999999988
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
++++||++.++|.++.... ....|++|.+
T Consensus 95 ~~~~iG~~~i~L~~l~~~~---~~~~w~~L~~ 123 (123)
T cd08390 95 RHCIIGHVLFPLKDLDLVK---GGVVWRDLEP 123 (123)
T ss_pred CCcEEEEEEEeccceecCC---CceEEEeCCC
Confidence 8999999999999986532 3579999964
No 151
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.59 E-value=8.9e-15 Score=139.68 Aligned_cols=89 Identities=37% Similarity=0.637 Sum_probs=84.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEe
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~ 81 (800)
.|+|+|++|+||+..+. +.+||||++.+++++.+|++++++.||+|||+|.|.+.+....|.|+|||++.+++|++||+
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 58999999999999887 88999999999999999999999999999999999998778899999999999999999999
Q ss_pred EEeeCccccc
Q 003728 82 LKIPVSRVFD 91 (800)
Q Consensus 82 v~i~l~~l~~ 91 (800)
+.+++.++..
T Consensus 82 a~i~l~~l~~ 91 (145)
T cd04038 82 AEIDLEPLVE 91 (145)
T ss_pred EEEEHHHhhh
Confidence 9999999875
No 152
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2.2e-14 Score=137.56 Aligned_cols=117 Identities=15% Similarity=0.276 Sum_probs=95.6
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEEEeeeccCCCCCeeccEEEEEEeCC---------CCEEEEE
Q 003728 3 LVVRVIEARN--IPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---------KDELVIS 66 (800)
Q Consensus 3 L~V~Vi~A~~--L~~~d~~g~~DPyv~v~l-----~~~~~kTkv~~~t~nP~WnE~f~f~v~~~---------~~~L~i~ 66 (800)
..++|..|++ |+..+.++.+||||++.+ ..++.+|+++++|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 778887889999999997 24689999999999999999999999543 3579999
Q ss_pred EEecCCC-CCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 67 VLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 67 V~D~d~~-~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
|||.+.+ .+|++||++.++|..+... .....|++|.... ....|+|++.++.-
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~---~~~~~~~~L~~~~----k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK---CEIHESVDLMDGR----KATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc---CcceEEEEhhhCC----CCcCCEEEEEEEec
Confidence 9999986 4799999999999998542 2345699998533 26789999999984
No 153
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=4.8e-16 Score=163.22 Aligned_cols=103 Identities=39% Similarity=0.652 Sum_probs=92.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEe--CCCCEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v~--~~~~~L~i~V~D~d~~~ 74 (800)
.|.|+|.+|+||.++|.||.+||||++.+- ..+++|++++.++||+|||+|.|.+. +.+..|.|+|||||+-+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 588999999999999999999999999993 34799999999999999999999994 45689999999999999
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
+++|+|...+.+++|... ....||.|....
T Consensus 261 RNDFMGslSFgisEl~K~----p~~GWyKlLsqe 290 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKA----PVDGWYKLLSQE 290 (683)
T ss_pred cccccceecccHHHHhhc----chhhHHHHhhhh
Confidence 999999999999999753 368999998754
No 154
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.59 E-value=4.7e-15 Score=140.12 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=83.0
Q ss_pred CCeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-----eeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEE
Q 003728 535 DGWLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVY 605 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~--~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~ 605 (800)
..+.|+|+|++|+||+.+|. .+.+||||++++..+ +++|+++++++||+|||+|.|.+..+ ....|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 45679999999999999983 355999999996432 27899999999999999999988543 2456999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEEC
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
|+|. ++++++||++.+.+.. .+...+.|..+
T Consensus 93 d~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 93 NQDS-PGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred eCCC-CcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 9999 8999999999999864 33344555554
No 155
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.7e-14 Score=132.88 Aligned_cols=112 Identities=34% Similarity=0.541 Sum_probs=95.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCceeE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~lG 80 (800)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999888999999999975 45899999999999999999999954 4688999999999988899999
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEE
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L 121 (800)
++.+++.++... .....|++|.++++ ...|.+.|
T Consensus 81 ~~~~~l~~l~~~---~~~~~~~~L~~~g~----~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPE---ETTELTLPLDGQGG----GKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCC---CcEEEEEECcCCCC----ccCceEEc
Confidence 999999998642 34689999997764 34566653
No 156
>PLN03008 Phospholipase D delta
Probab=99.58 E-value=1.1e-14 Score=168.04 Aligned_cols=121 Identities=21% Similarity=0.370 Sum_probs=102.6
Q ss_pred eEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCee-eEe
Q 003728 537 WLLTVALIKGDNLAAVDS------------------------------------------SGFCDPYVVFTCNGKS-RTS 573 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~------------------------------------------~g~sDPYv~v~~~~~~-~~T 573 (800)
|.|.|+|.+|++|+.+|. .++|||||+|.+++++ .+|
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 679999999999986332 3478999999998875 799
Q ss_pred eccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc--cccce
Q 003728 574 SIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA--CQSKL 651 (800)
Q Consensus 574 ~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~--~~G~l 651 (800)
+++++++||+|||+|.|.+.. +...|.|.|||+|. ++ +|+||.+.|++.++..++..+.|++|.+..++. ..++|
T Consensus 94 rVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred EeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence 999999999999999998655 46789999999999 76 579999999999999998899999998654443 36799
Q ss_pred EEEEEEecC
Q 003728 652 HLRIFLNNT 660 (800)
Q Consensus 652 ~l~~~~~~~ 660 (800)
||+++|...
T Consensus 171 ~v~lqf~pv 179 (868)
T PLN03008 171 FIDMKFTPF 179 (868)
T ss_pred EEEEEEEEc
Confidence 999997643
No 157
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.58 E-value=2.3e-15 Score=143.10 Aligned_cols=106 Identities=26% Similarity=0.377 Sum_probs=88.0
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---eeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEE
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC--NGK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~--~~~---~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 606 (800)
...+.|.|+|++|+||+..+..|.+||||+|.+ ++. .++|+++++++||.|||+|.|.+..+ ....|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 345779999999999999999999999999997 322 37899999999999999999987532 24579999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
+|. ++++++||++.+++... +...+.|+++...
T Consensus 92 ~~~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 92 KDR-LSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred CCC-CCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 999 88999999999999875 4445677777543
No 158
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.58 E-value=3.3e-14 Score=133.47 Aligned_cols=116 Identities=27% Similarity=0.507 Sum_probs=97.6
Q ss_pred CEEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEeeeccCCC-CCeeccEEEEEEeCCC-CEEEEEEEec
Q 003728 1 MKLVVRVIEARNIPAMD--QNGYSDPYVRLQL------GRQRFKTKVVRKSL-SPSWEEEFSFKVEDLK-DELVISVLDE 70 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d--~~g~~DPyv~v~l------~~~~~kTkv~~~t~-nP~WnE~f~f~v~~~~-~~L~i~V~D~ 70 (800)
|+|+|+|++|+||+..+ ..+.+||||++++ ...+.+|+++.++. ||.|||+|.|.+.... ..|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999999888 5788999999999 34568999988765 9999999999986443 5799999999
Q ss_pred CCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 71 d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
+.. ++++||++.+++.++.. +..|++|....+. ....|.|.+.+++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKGE--PLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC------ceEEEEecCCCCC--CCcceeEEEEEEE
Confidence 987 89999999999999842 4578999876543 2457999998875
No 159
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.58 E-value=1.1e-14 Score=137.66 Aligned_cols=87 Identities=26% Similarity=0.344 Sum_probs=77.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~ 73 (800)
+|.|+|++|+||+..+..|.+||||++.+.+ .+.+|+++++++||+|||+|.|.++. .+..|.|+|||++.+
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~ 95 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence 6999999999999999889999999999943 25789999999999999999999943 357899999999999
Q ss_pred CCCceeEeEEeeCcc
Q 003728 74 FNDDFVGFLKIPVSR 88 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~ 88 (800)
+++++||++.|+...
T Consensus 96 ~~~~~iG~v~lg~~~ 110 (136)
T cd08406 96 GKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCeeEEEEECCCC
Confidence 999999999997654
No 160
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.58 E-value=9.3e-15 Score=138.88 Aligned_cols=106 Identities=25% Similarity=0.431 Sum_probs=87.7
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeEeeccCCCCCCeEeeEEEEEeeCCC--CcEEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G---KSRTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVY 605 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~---~~~~T~v~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~ 605 (800)
....+.|+|+|++|++|+.+|..|.+||||+|.+. + ..++|+++++++||.|||+|.|.+.... ...|.|+||
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~ 90 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVL 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 34557899999999999999999999999999984 2 2378999999999999999999875432 347999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEECCc
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 641 (800)
|+|. +++|++||++.|++... +...+.|+++..
T Consensus 91 d~~~-~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 91 DYDR-IGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred eCCC-CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 9999 89999999999999763 344467777753
No 161
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=1.1e-14 Score=135.70 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=79.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEe--CCCCEEEEEEEecCCCCCCcee
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYFNDDFV 79 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~--~~~~~L~i~V~D~d~~~~d~~l 79 (800)
+|+|+|++|++|+. +..+.+||||+|.+++++.+|++++++.||+|||+|.|... +....|.|+|||++.+++|++|
T Consensus 29 ~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~I 107 (127)
T cd04032 29 TLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLL 107 (127)
T ss_pred EEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCee
Confidence 69999999999984 66788999999999999999999999999999999999753 3468999999999998899999
Q ss_pred EeEEeeCcccc
Q 003728 80 GFLKIPVSRVF 90 (800)
Q Consensus 80 G~v~i~l~~l~ 90 (800)
|++.++|....
T Consensus 108 G~~~i~l~~~~ 118 (127)
T cd04032 108 GTCSVVPEAGV 118 (127)
T ss_pred EEEEEEecCCc
Confidence 99999998764
No 162
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.57 E-value=1.3e-14 Score=139.29 Aligned_cols=96 Identities=40% Similarity=0.678 Sum_probs=84.1
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeeeccCCCCCeeccE
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----------------------------RFKTKVVRKSLSPSWEEE 51 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-----------------------------~~kTkv~~~t~nP~WnE~ 51 (800)
+.|.|+|++|+||++++.+|.+||||++.++.. ..+|+++.+++||.|||+
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~ 107 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNET 107 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccE
Confidence 479999999999999999999999999998632 378999999999999999
Q ss_pred EEEEEeCC-CCEEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCccEEEEc
Q 003728 52 FSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 52 f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
|.|.+... ...|.|+|||++ +++||++.++++++.. . ..+.||+|
T Consensus 108 F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~---~~d~W~~L 153 (153)
T cd08676 108 FRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-C---GLDSWFKL 153 (153)
T ss_pred EEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-C---CCCCeEeC
Confidence 99999653 578999999997 7899999999999962 1 35899987
No 163
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.57 E-value=2e-14 Score=134.04 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=88.8
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeCC---CCcEEEEE
Q 003728 532 AQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVE 603 (800)
Q Consensus 532 ~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~L~v~ 603 (800)
.....+.|+|+|++|++|+..+..+.+||||++.+. ....+|+++++++||.|||+|.|..... ....|.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 334557799999999999999988999999999973 2348999999999999999999953322 24689999
Q ss_pred EEEccCCCCCCceeEEEEEEceecCCCCceeEEEEC
Q 003728 604 VYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 604 V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
|||++. + .+++||++.++++++..++..+.|+.|
T Consensus 90 v~d~~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 90 VLDEDR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EEEcCC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 999998 7 889999999999999988777777654
No 164
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.57 E-value=1.2e-14 Score=141.86 Aligned_cols=102 Identities=30% Similarity=0.493 Sum_probs=87.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 28 ~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred eEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC
Confidence 599999999999999988999999999983 357999999999999999999998622 23589999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
++++++||++.+++.++...+ ....|+.|..
T Consensus 108 ~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~~ 138 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKSYG---QAVDWMDSTG 138 (162)
T ss_pred CCCCceEEEEEEeCCccccCC---CccccccCCh
Confidence 888999999999999986432 3578988864
No 165
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.57 E-value=1.1e-14 Score=138.12 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=85.4
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-CCe----eeEeeccCCCCCCeEeeEEEEEeeCCC--CcEEEEEEEE
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC-NGK----SRTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYD 606 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~-~~~----~~~T~v~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D 606 (800)
...+.|+|+|++|+||+..|..|.+||||++.+ .+. .++|+++++|+||.|||+|.|.+..+. ...|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 345779999999999999999999999999996 332 379999999999999999999874332 3369999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
+|. .+++++||++.|....... ...+.|..|...
T Consensus 91 ~d~-~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 91 HNV-KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred CCC-CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 998 8999999999876533221 224678777543
No 166
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=1.9e-14 Score=134.37 Aligned_cols=115 Identities=29% Similarity=0.437 Sum_probs=91.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeccEEEEEEe-CCCCEEEEEEEecCCCCCCcee
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFV 79 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~--~kTkv~~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~~~~d~~l 79 (800)
|+|+|++|++|++.+..+.+||||++.+++.. .+|++++++.||.|||+|.|.+. +....|.|+|||++.+++|++|
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i 81 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI 81 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence 78999999999999999999999999998765 57888999999999999999984 3457899999999998899999
Q ss_pred EeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 80 G~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
|++.+++.+..... ...|.-+.+.. ...|.++....+.
T Consensus 82 G~~~i~l~~~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~ 119 (124)
T cd04037 82 GETVIDLEDRFFSK----HRATCGLPPTY-----EESGPNQWRDSLK 119 (124)
T ss_pred EEEEEeecccccch----HHHhccCCCcc-----cccCceecCcccC
Confidence 99999999875310 12222232221 3467777666554
No 167
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.56 E-value=4.3e-15 Score=140.82 Aligned_cols=105 Identities=27% Similarity=0.426 Sum_probs=86.7
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeEeeccCCCCCCeEeeEEEEEeeCCC--CcEEEEEEEE
Q 003728 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYD 606 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D 606 (800)
...+.|+|+|++|++|+++|..|.+||||+|.+. ++ .++|+++++++||.|||+|.|.+..+. ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 3457899999999999999999999999999973 22 378999999999999999999874432 2469999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECCc
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 641 (800)
+|. ++++++||++.+++.. .+...+.|+++-.
T Consensus 91 ~~~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 91 YDR-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CCC-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 999 8999999999998763 3444567877753
No 168
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.55 E-value=3.1e-14 Score=134.51 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=76.5
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecC
Q 003728 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDED 71 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~--~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d 71 (800)
+|.|.|++|+||+.++. .+.+||||++++.. .+++|++++++.||+|||.|.|.++.. ...|.|+|||+|
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 69999999999999883 35599999999964 257899999999999999999999542 478999999999
Q ss_pred CCCCCceeEeEEeeCcc
Q 003728 72 KYFNDDFVGFLKIPVSR 88 (800)
Q Consensus 72 ~~~~d~~lG~v~i~l~~ 88 (800)
.++++++||++.+++..
T Consensus 96 ~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 96 SPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCcCcceeceEEecCcC
Confidence 99999999999999865
No 169
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.55 E-value=3.9e-14 Score=134.59 Aligned_cols=103 Identities=29% Similarity=0.483 Sum_probs=87.3
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (800)
++|.|+|++|+||+..+.+|.+||||++.+.. .+.+|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 47999999999999999999999999999842 25789999999999999999999843 34679999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
++++++||++.+++... . .....|+.|....
T Consensus 95 ~~~~~~iG~~~~~~~~~-~----~~~~~w~~l~~~~ 125 (136)
T cd08404 95 VTKNEVIGRLVLGPKAS-G----SGGHHWKEVCNPP 125 (136)
T ss_pred CCCCccEEEEEECCcCC-C----chHHHHHHHHhCC
Confidence 99999999999999872 2 1256788886543
No 170
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.55 E-value=2.6e-14 Score=135.28 Aligned_cols=102 Identities=34% Similarity=0.589 Sum_probs=87.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~ 73 (800)
+|.|+|++|+||++.+..+.+||||++.+.+ .+.+|+++++++||+|||+|.|.+... ...|.|+|||++..
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~ 93 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG 93 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC
Confidence 7999999999999999999999999999953 368999999999999999999998432 46899999999998
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
+++++||++.+++... +.....||.+....
T Consensus 94 ~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~~ 123 (133)
T cd08384 94 KSNDYIGGLQLGINAK-----GERLRHWLDCLKNP 123 (133)
T ss_pred CCccEEEEEEEecCCC-----CchHHHHHHHHhCC
Confidence 8899999999999752 12346788887543
No 171
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.54 E-value=3e-14 Score=135.41 Aligned_cols=89 Identities=36% Similarity=0.588 Sum_probs=78.5
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (800)
.+|.|+|++|++|+.++..|.+||||++.++. .+++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 94 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR 94 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 36999999999999999999999999999942 357899999999999999999998432 2489999999999
Q ss_pred CCCCceeEeEEeeCccc
Q 003728 73 YFNDDFVGFLKIPVSRV 89 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l 89 (800)
++++++||++.|++...
T Consensus 95 ~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 95 IGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCceeEEEEECCccC
Confidence 99999999999999763
No 172
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.54 E-value=8.4e-15 Score=138.71 Aligned_cols=105 Identities=25% Similarity=0.381 Sum_probs=90.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeEeeccCCCCCCeEeeEEEEEeeCCC--CcEEEEEEEEc
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYDF 607 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 607 (800)
..+.|.|+|++|+||+..+..+.+||||++++.+. .++|+++.++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 44679999999999999998999999999997542 378999999999999999999875542 46899999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
+. ++++++||.+.+++.+ .+...+.|++|...
T Consensus 92 ~~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 92 DS-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 98 7899999999999998 55666899999754
No 173
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=7.7e-14 Score=126.46 Aligned_cols=93 Identities=18% Similarity=0.337 Sum_probs=74.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEc------
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDF------ 607 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~------ 607 (800)
|.|+|.+|+||+ |.+||||++.++. ...+|+++.+|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999995 4699999999853 34899999999999999999998753 67999999998
Q ss_pred -cCCCCCCceeEEEEEEcee--cCCCCceeEEEEC
Q 003728 608 -DGPFNEATSLGHAEINFVK--SDISDLADVWIPL 639 (800)
Q Consensus 608 -d~~~~~dd~iG~~~i~l~~--l~~~~~~~~w~~L 639 (800)
|. .++|++||++.+.|.. +.....+..-+.|
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred ccc-cCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 56 6889999888887743 3333444555555
No 174
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.54 E-value=1.9e-14 Score=180.76 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=102.0
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeccCCCCCCeEeeEEEEEeeCCC-CcEEEEEEEEccCCCC
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEP-PSMLDVEVYDFDGPFN 612 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~~~~~~-~~~L~v~V~D~d~~~~ 612 (800)
-.|.|+|+|++|+||. +..|.+||||++.++++ +++|++++++.||+|||+|+|.+..++ .+.|+|+|||+|. |+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f~ 2054 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-FG 2054 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-cC
Confidence 4588999999999998 44789999999999966 689999999999999999998765543 3679999999999 85
Q ss_pred CCceeEEEEEEceecCCCCceeEEEECCccCcCccccc---eEEEEEEec
Q 003728 613 EATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSK---LHLRIFLNN 659 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~---l~l~~~~~~ 659 (800)
+| .||+++|++.++..++....||+|.+++++ .|+ |++++.|.+
T Consensus 2055 kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k--~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2055 KS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNK--DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CC-CCceEEEEHHHHhcCceeeeeeecCccccc--CCCcceEEEEEEecC
Confidence 55 999999999999998889999999865332 345 899888864
No 175
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.53 E-value=2.2e-14 Score=133.67 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=83.1
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeEeeccCCCC-CCeEeeEEEEEeeCC-CCcEEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQC-DPMWNEIFEYDAMDE-PPSMLDVEVY 605 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~-nP~WnE~f~f~~~~~-~~~~L~v~V~ 605 (800)
+...+.|+|+|++|+||++++..+.+||||+|.+- ++ +++|+++++|+ ||.|||+|.|++..+ ....|.|+||
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence 34567899999999999998667788999999852 22 38999999996 699999999998653 2346889999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEEC
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L 639 (800)
|+|. .+++++||++.+..... .+...+.|...
T Consensus 90 d~~~-~~~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 90 SRSS-VRRKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred eCCC-CcCCceEEEEEECCccC-CchhhhhHHHH
Confidence 9998 88999999999998763 22234566554
No 176
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=5e-14 Score=133.75 Aligned_cols=101 Identities=25% Similarity=0.441 Sum_probs=84.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~------~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (800)
+|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|+|||.+.
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~ 95 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC
Confidence 6999999999999999999999999999942 25799999999999999999999953 34699999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
++++++||++.+++...-.. ....|+.+..
T Consensus 96 ~~~~~~iG~v~l~~~~~~~~----~~~hW~~~l~ 125 (138)
T cd08408 96 MKRKEMIGWFSLGLNSSGEE----EEEHWNEMKE 125 (138)
T ss_pred CCCCcEEEEEEECCcCCCch----HHHHHHHHHh
Confidence 89999999999988754211 1245666654
No 177
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.53 E-value=5.4e-14 Score=132.72 Aligned_cols=102 Identities=40% Similarity=0.654 Sum_probs=90.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--CCCEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~~ 74 (800)
+|.|+|++|++|+..+..+.+||||.+.+.+ ...+|++++++.||.|||+|.|.+.. ....|.|+|||++.++
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~ 93 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT 93 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCC
Confidence 6899999999999988888999999999963 67999999999999999999999854 3578999999999888
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEcccC
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~ 107 (800)
++++||++.+++.++... ....||+|...
T Consensus 94 ~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 94 RNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred CcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 899999999999999642 46789999864
No 178
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=4.6e-14 Score=134.00 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=86.5
Q ss_pred cCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---Ce---eeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEE
Q 003728 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEV 604 (800)
Q Consensus 533 ~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~---~~---~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V 604 (800)
....+.|.|+|++|+||+.++..|.+||||++.+. ++ +++|+++++++||+|||+|.|.+..+ ....|.|.|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 33457799999999999999999999999999973 22 37999999999999999999988543 345899999
Q ss_pred EEccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 605 YDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 605 ~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
||+|. ++++++||++.+.+..... +..+.|..+.
T Consensus 91 ~~~~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 91 YNKRK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred EECCC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 99998 8999999999998864321 2235677664
No 179
>PLN03008 Phospholipase D delta
Probab=99.52 E-value=8.6e-14 Score=160.87 Aligned_cols=107 Identities=24% Similarity=0.415 Sum_probs=92.1
Q ss_pred CCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCc
Q 003728 20 GYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLP 98 (800)
Q Consensus 20 g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~ 98 (800)
+++||||+|.++++ ..+|+++.++.||+|||+|.|.+.+....|.++|||+|.++ +++||++.||+.++... ...
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G---e~v 150 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG---ERI 150 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCC---Cce
Confidence 46799999999876 46999999999999999999999877789999999999986 68999999999998653 346
Q ss_pred cEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 003728 99 TAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (800)
Q Consensus 99 ~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~~~~ 131 (800)
..|++|....+++ .+..|+|+|++.|.+....
T Consensus 151 d~Wl~Ll~~~~kp-~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 151 SGWFPVLGASGKP-PKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEccccCCCC-CCCCcEEEEEEEEEEcccc
Confidence 7999999877654 3567999999999987544
No 180
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=8.1e-14 Score=132.43 Aligned_cols=89 Identities=35% Similarity=0.618 Sum_probs=78.7
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeccCCCCCeeccEEEEEEeC--C-CCEEEEEEEecCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDK 72 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~--~---~~~kTkv~~~t~nP~WnE~f~f~v~~--~-~~~L~i~V~D~d~ 72 (800)
.+|.|+|++|+||+..+.++.+||||++.+. + .+.+|++++++.||+|||+|.|.+.. . ...|.|+|||++.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~ 94 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence 3799999999999999989999999999983 2 35789999999999999999999842 2 4689999999999
Q ss_pred CCCCceeEeEEeeCccc
Q 003728 73 YFNDDFVGFLKIPVSRV 89 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l 89 (800)
++++++||++.+++.+.
T Consensus 95 ~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 95 LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCcEeEEEEECCccC
Confidence 89999999999999875
No 181
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=1e-13 Score=126.88 Aligned_cols=100 Identities=27% Similarity=0.516 Sum_probs=85.5
Q ss_pred CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeEeEEeeCccccccCCC
Q 003728 18 QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (800)
Q Consensus 18 ~~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~ 95 (800)
++|.+||||.+.++++ ..+|+++.++.||.|||.|.|.+.+. ...|.|.|||++.+ ++++||.+.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~-- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT-- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh--
Confidence 4788999999999875 57999999999999999999999654 57899999999998 8999999999999986422
Q ss_pred CCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
.....||+|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~-------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG-------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC-------CCCCEEEEEEEEec
Confidence 23579999985 24699999999965
No 182
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.51 E-value=1.6e-14 Score=137.21 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=85.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEc
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 607 (800)
..+.|.|+|++|+||+..+ .+.+||||++.+.. .+++|+++++++||.|||+|.|.+..+ ....|.|+|||+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 3467999999999999999 88899999999642 247899999999999999999988543 235799999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
+. .+++++||++.|.......+...+.|..+-
T Consensus 92 ~~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 92 GG-VRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred CC-CCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 98 889999999999865544444456666654
No 183
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.50 E-value=1.3e-13 Score=128.45 Aligned_cols=88 Identities=19% Similarity=0.334 Sum_probs=75.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCC-CCeeccEEEEEEeC--CCCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSL-SPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~-nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~ 73 (800)
+|.|.|++|+||+++...+..||||+|.+.. .++||+++++++ ||+|||+|.|++.. .+-.|.|+|||++..
T Consensus 15 rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~ 94 (135)
T cd08692 15 RIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSV 94 (135)
T ss_pred eEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCC
Confidence 6999999999999986666789999999831 468999999995 69999999999943 235788999999988
Q ss_pred CCCceeEeEEeeCccc
Q 003728 74 FNDDFVGFLKIPVSRV 89 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l 89 (800)
+++++||++.++....
T Consensus 95 ~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 95 RRKHFLGQVWISSDSS 110 (135)
T ss_pred cCCceEEEEEECCccC
Confidence 8999999999998764
No 184
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.50 E-value=1.5e-13 Score=127.56 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=84.2
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeccEEEEEEe-CCCCEEEEEEEecCC----C
Q 003728 6 RVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDK----Y 73 (800)
Q Consensus 6 ~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-------~~kTkv~~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~----~ 73 (800)
-.++|++|+..+..|.+||||++.+.+. ..+|+++++++||+|||+|.|.+. +....|.++|||++. +
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3488999999999999999999999654 489999999999999999999873 345789999999997 7
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEccc
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
+++++||++.+++.++...+ ....|+.|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP---GQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC---CcEEEEEccC
Confidence 89999999999999997543 3567888843
No 185
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.2e-14 Score=154.94 Aligned_cols=120 Identities=25% Similarity=0.425 Sum_probs=99.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCC-----
Q 003728 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP----- 610 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~----- 610 (800)
...++++|+.|++|.++|..|+|||||.+.++..+++|+++...+||+|||.|.|+.++. ...|++.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHH
Confidence 356999999999999999999999999999999999999999999999999999998876 67899999999841
Q ss_pred -----CCCCceeEEEEEEceecCCCCceeEEEECCccCc-CccccceEEEEEEe
Q 003728 611 -----FNEATSLGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFLN 658 (800)
Q Consensus 611 -----~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~-~~~~G~l~l~~~~~ 658 (800)
-..|||+|+..|.+..+.. .-+.||.|+.+.. .+..|-|+|.+.+.
T Consensus 373 rqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEE
Confidence 1368999999999998764 3489999985432 23455555555543
No 186
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.50 E-value=1.7e-13 Score=129.80 Aligned_cols=102 Identities=29% Similarity=0.543 Sum_probs=83.8
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (800)
.+|+|+|++|++|++.+..|.+||||++.+.. .+.+|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 37999999999999999999999999999842 357899999999999999999998432 2479999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEcccC
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~ 107 (800)
++++++||++.+++... +.....|+.+...
T Consensus 94 ~~~~~~IG~~~l~~~~~-----~~~~~~w~~~~~~ 123 (134)
T cd08403 94 VGHNELIGVCRVGPNAD-----GQGREHWNEMLAN 123 (134)
T ss_pred CCCCceeEEEEECCCCC-----CchHHHHHHHHHC
Confidence 99999999999998632 1123567666543
No 187
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.49 E-value=1.6e-13 Score=130.17 Aligned_cols=103 Identities=30% Similarity=0.467 Sum_probs=83.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--C-CCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~--~-~~~L~i~V~D~d~~ 73 (800)
+|.|+|++|++|+..+.+|.+||||++++.. .+++|++++++.||+|||+|.|.+.. . ...|.|+|||++..
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~ 94 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVK 94 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 6899999999999999999999999999832 35799999999999999999999942 2 34799999999988
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
+++++||++.|....... .....|+.|....
T Consensus 95 ~~~~~iG~~~l~~~~~~~----~~~~~W~~l~~~~ 125 (135)
T cd08410 95 SSNDFIGRIVIGQYSSGP----SETNHWRRMLNSQ 125 (135)
T ss_pred CCCcEEEEEEEcCccCCc----hHHHHHHHHHhCC
Confidence 999999999876543311 1246788777554
No 188
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.47 E-value=2.4e-13 Score=124.18 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=75.0
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeEeeccCCCCCCeEeeEEEEEee----CCCCcEEEEEEEEccCC
Q 003728 541 VALIKGDNLAAVDSSGFCDPYVVFTCNGK------SRTSSIKFQQCDPMWNEIFEYDAM----DEPPSMLDVEVYDFDGP 610 (800)
Q Consensus 541 V~vi~a~~L~~~d~~g~sDPYv~v~~~~~------~~~T~v~~~t~nP~WnE~f~f~~~----~~~~~~L~v~V~D~d~~ 610 (800)
+-.++|++|+.+|..|++||||++.+.+. .++|+++++++||.|| +|.|.+. .+....|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 34579999999999999999999997543 3899999999999999 6887653 2236789999999999
Q ss_pred CCCCceeEEEEEEceecCCC
Q 003728 611 FNEATSLGHAEINFVKSDIS 630 (800)
Q Consensus 611 ~~~dd~iG~~~i~l~~l~~~ 630 (800)
+++|++||++++++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 88999999999999998743
No 189
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.47 E-value=3.5e-14 Score=118.05 Aligned_cols=67 Identities=40% Similarity=0.726 Sum_probs=48.8
Q ss_pred cccccccCCCccceeeecccceeee-ecccccceeeecceeEEeccCCCcee-EEEEEccccceEEEcC
Q 003728 690 SAFQKLFGLPPEEFLINDFTCHLKR-KMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 756 (800)
Q Consensus 690 ~~f~~~F~lp~~E~l~~~~~c~l~~-~~~~~G~ly~s~~~~cf~s~~~g~~~-k~~~~~~di~~i~k~~ 756 (800)
+.|++.|+||.+|.|+..|.|++++ +++++|+||++.+++||+|+.++..+ +++|||.||..|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 3689999999999999999999999 99999999999999999999999888 9999999999999963
No 190
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.8e-13 Score=151.35 Aligned_cols=125 Identities=26% Similarity=0.404 Sum_probs=106.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeccCCCCCCeEeeEEEEEeeC--CCCcEEEEEEEEccCCC
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMD--EPPSMLDVEVYDFDGPF 611 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~~~~--~~~~~L~v~V~D~d~~~ 611 (800)
..|+|+|++|++|+.+|..|.+||||++++-- .+++|++.++|+||.|||+|.|.+.. .....|.+.|||+|+ |
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr-f 245 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR-F 245 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-c
Confidence 45999999999999999888899999999753 34999999999999999999998633 346789999999999 9
Q ss_pred CCCceeEEEEEEceecCCCCceeEEEECCcc--CcCccccceEEEEEEecCCC
Q 003728 612 NEATSLGHAEINFVKSDISDLADVWIPLQGK--LAQACQSKLHLRIFLNNTKG 662 (800)
Q Consensus 612 ~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k--~~~~~~G~l~l~~~~~~~~~ 662 (800)
++|++||++.++|..+........|.+|... ......|.|.+.+.|....+
T Consensus 246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 9999999999999998877777899999853 22233479999999887654
No 191
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.4e-14 Score=151.77 Aligned_cols=122 Identities=33% Similarity=0.561 Sum_probs=107.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCC--------
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~-------- 73 (800)
++.++|+.|.+|.++|+.|++||||.+++++.+++|+++..++||+|||.|+|+..+....|.+.|||+|.-
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqk 375 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQK 375 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ---CCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCC
Q 003728 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (800)
Q Consensus 74 ---~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~~~ 130 (800)
.+|+|+|+..|.+..+.. ..+.||.|..+..++ .+.|-|+|.|...-.+.
T Consensus 376 l~resddflgqtvievrtlsg-----emdvwynlekrtdks--avsgairlhisveikge 428 (1283)
T KOG1011|consen 376 LTRESDDFLGQTVIEVRTLSG-----EMDVWYNLEKRTDKS--AVSGAIRLHISVEIKGE 428 (1283)
T ss_pred hhhcccccccceeEEEEeccc-----chhhhcchhhccchh--hccceEEEEEEEEEcCc
Confidence 368999999999988742 257899999988765 57899998888765433
No 192
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.47 E-value=3.3e-13 Score=128.20 Aligned_cols=87 Identities=31% Similarity=0.444 Sum_probs=76.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--C-CCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~--~-~~~L~i~V~D~d~~ 73 (800)
+|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||+|||+|.|.++. . ...|.|+|||.+..
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 6899999999999988 78899999999853 36799999999999999999999942 2 36899999999988
Q ss_pred CCCceeEeEEeeCccc
Q 003728 74 FNDDFVGFLKIPVSRV 89 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l 89 (800)
+++++||++.++....
T Consensus 95 ~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 95 RKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCcceEEEEEECCccc
Confidence 8999999999986443
No 193
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=8.1e-14 Score=131.94 Aligned_cols=102 Identities=32% Similarity=0.526 Sum_probs=88.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----RFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-----~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~ 73 (800)
+|.|+|++|+||+..+..+.+||||++.+.+. +++|+++.++.||.|||+|.|.+... ...|.|+|||.+.+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 79999999999999988889999999999642 57999999999999999999999543 47899999999988
Q ss_pred CCCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
+++++||++.+++.+ . +.....|++|....
T Consensus 95 ~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 GRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred CCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 889999999999998 2 22357899988654
No 194
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.45 E-value=7.1e-13 Score=123.62 Aligned_cols=90 Identities=36% Similarity=0.662 Sum_probs=79.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEE-eC---CCCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-ED---LKDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v-~~---~~~~L~i~V~D~d~ 72 (800)
+|.|+|++|++|++.+..+.+||||++.+. ....+|++++++.||+|||+|.|.. .. ....|.|+|||++.
T Consensus 16 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 799999999999999888899999999984 2468999999999999999999964 22 24689999999998
Q ss_pred CCCCceeEeEEeeCcccccc
Q 003728 73 YFNDDFVGFLKIPVSRVFDA 92 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~ 92 (800)
+ .+++||++.+++.++...
T Consensus 96 ~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred c-CCeeEEEEEEEcccCCCC
Confidence 7 899999999999999653
No 195
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.44 E-value=5.8e-13 Score=120.77 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=69.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEec-------
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE------- 70 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~------- 70 (800)
|.|+|.+|+||+ +.+||||++.++. .+.+|+++.+++||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 689999999995 4599999999853 46999999999999999999999964 78999999998
Q ss_pred CCCCCCceeEeEEeeCcc
Q 003728 71 DKYFNDDFVGFLKIPVSR 88 (800)
Q Consensus 71 d~~~~d~~lG~v~i~l~~ 88 (800)
|..++|+++|.+.+.|..
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 466789999888887754
No 196
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.43 E-value=7.8e-13 Score=114.06 Aligned_cols=82 Identities=35% Similarity=0.590 Sum_probs=75.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 615 (800)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|||+|.|.+.......|.|+|||++. +++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999999899999999999987 66999999999999999999999766667779999999999 88899
Q ss_pred eeEEEE
Q 003728 616 SLGHAE 621 (800)
Q Consensus 616 ~iG~~~ 621 (800)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 197
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.41 E-value=3.1e-14 Score=163.26 Aligned_cols=89 Identities=25% Similarity=0.371 Sum_probs=82.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCC
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS--RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~--~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 614 (800)
.+++|.|++|.+|.+.|.+|.+||||.+.+|++. -+...+.+|+||++++.|++...-+....+.++|||+|. ++.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~-~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL-EAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec-cccc
Confidence 5688999999999999999999999999999887 788899999999999999998877777789999999999 8999
Q ss_pred ceeEEEEEEcee
Q 003728 615 TSLGHAEINFVK 626 (800)
Q Consensus 615 d~iG~~~i~l~~ 626 (800)
+.||+..++|..
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999843
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.38 E-value=1.6e-12 Score=118.75 Aligned_cols=87 Identities=22% Similarity=0.483 Sum_probs=75.8
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEeeeccCCCCCeeccEEEEEEe-----CCCCEEEEEEEecCC
Q 003728 4 VVRVIEARNIPAMDQNGYSDPYVRLQLGRQ------RFKTKVVRKSLSPSWEEEFSFKVE-----DLKDELVISVLDEDK 72 (800)
Q Consensus 4 ~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~------~~kTkv~~~t~nP~WnE~f~f~v~-----~~~~~L~i~V~D~d~ 72 (800)
.+-.++|++|+..+..+.+||||++.+.+. .++|+++++++||+|| +|.|.+. +....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 455679999999999999999999998543 5899999999999999 7888763 225799999999999
Q ss_pred CCCCceeEeEEeeCccccc
Q 003728 73 YFNDDFVGFLKIPVSRVFD 91 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~ 91 (800)
+++|++||++.+++.++..
T Consensus 82 ~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 82 SGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCcEEEEEEEEHHHHhc
Confidence 9999999999999999963
No 199
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.36 E-value=1.7e-12 Score=163.51 Aligned_cols=115 Identities=26% Similarity=0.443 Sum_probs=97.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCC--CEEEEEEEecCCCCCCce
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLK--DELVISVLDEDKYFNDDF 78 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~--~~L~i~V~D~d~~~~d~~ 78 (800)
.|+|+|++|+||. +..|.+||||++.++++ +.||++++++.||+|||+|.|.+.++. ..|+|+|||+|.+++ +.
T Consensus 1981 ~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k-d~ 2057 (2102)
T PLN03200 1981 SLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK-SS 2057 (2102)
T ss_pred ceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC-CC
Confidence 5899999999998 55789999999999966 889999999999999999998885543 779999999999854 58
Q ss_pred eEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceE---EEEEEEEEe
Q 003728 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGE---ILLTISFSH 127 (800)
Q Consensus 79 lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~---I~L~l~~~~ 127 (800)
+|.+.|++.++...+ ....||+|.+++.+ .|+ |++.+.|.+
T Consensus 2058 ~G~~~i~l~~vv~~~---~~~~~~~L~~~~~k-----~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEG---TYSGEYSLNPESNK-----DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEHHHHhcCc---eeeeeeecCccccc-----CCCcceEEEEEEecC
Confidence 999999999997533 36789999965432 466 999988853
No 200
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.34 E-value=5.4e-12 Score=108.78 Aligned_cols=81 Identities=40% Similarity=0.741 Sum_probs=73.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEe-CCCCEEEEEEEecCCCCCCce
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDF 78 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkv~~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~~~~d~~ 78 (800)
|+|+|++|+||+..+..+..||||++.++. ...+|+++.++.+|.|+|+|.|.+. +....|.|+|||.+..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999976 6799999999999999999999973 344669999999999888999
Q ss_pred eEeEE
Q 003728 79 VGFLK 83 (800)
Q Consensus 79 lG~v~ 83 (800)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 201
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.33 E-value=1.8e-12 Score=104.97 Aligned_cols=59 Identities=37% Similarity=0.571 Sum_probs=56.6
Q ss_pred CCccceeeecccceeeeecccccceeeecceeEEeccCCCcee-EEEEEccccceEEEcC
Q 003728 698 LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 756 (800)
Q Consensus 698 lp~~E~l~~~~~c~l~~~~~~~G~ly~s~~~~cf~s~~~g~~~-k~~~~~~di~~i~k~~ 756 (800)
||++|.|+++|.|+|++.++++|+||++++++||+|+.+|..+ +++||+.||..|+|..
T Consensus 2 l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~ 61 (61)
T smart00568 2 LPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST 61 (61)
T ss_pred cCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence 7899999999999999999999999999999999999999989 9999999999999963
No 202
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.30 E-value=4.3e-12 Score=141.39 Aligned_cols=118 Identities=22% Similarity=0.312 Sum_probs=105.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
|.|+|.+|+||++.+..|.+||||.|.+++.. .+|.++.+++.|-|.|+|.|.++.. -..|.|-|||.| +++|+.|
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d--~~~D~~I 83 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD--LKRDDII 83 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc--ccccccc
Confidence 89999999999999999999999999999887 9999999999999999999977554 567999999999 4899999
Q ss_pred EEEEEEceecCCCCceeEEEECCccCc-CccccceEEEEEEec
Q 003728 618 GHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFLNN 659 (800)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~-~~~~G~l~l~~~~~~ 659 (800)
|.+.|.-.++....+.+.|+.|..-.. ...+|++||++.+..
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 999999888887778899999986443 345999999999754
No 203
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.30 E-value=1.7e-11 Score=108.13 Aligned_cols=100 Identities=34% Similarity=0.616 Sum_probs=88.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCcee
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~i 617 (800)
|.|+|++|++|......+..||||.+.+.+ ...+|.++.++.||.|||.|.|.+.......|.|+|||++. ...+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 579999999999877778999999999988 77999999999999999999998876446789999999998 6778899
Q ss_pred EEEEEEceecC-CCCceeEEEEC
Q 003728 618 GHAEINFVKSD-ISDLADVWIPL 639 (800)
Q Consensus 618 G~~~i~l~~l~-~~~~~~~w~~L 639 (800)
|++.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999988 66667888875
No 204
>PLN02223 phosphoinositide phospholipase C
Probab=99.25 E-value=6.3e-11 Score=132.48 Aligned_cols=117 Identities=20% Similarity=0.278 Sum_probs=94.7
Q ss_pred eEEEEEEEEeecCCC-----CCCCCCCCcEEEEEECCee-----eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEE
Q 003728 537 WLLTVALIKGDNLAA-----VDSSGFCDPYVVFTCNGKS-----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYD 606 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~-----~d~~g~sDPYv~v~~~~~~-----~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D 606 (800)
..|+|+|+.|++++. .+.....||||+|.+.|.. ++|++..++.||.|||+|+|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 569999999998752 1234568999999976543 678899999999999999999977767789999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc-cccceEEEEEE
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~~~~ 657 (800)
+|. .+.|+|+|++.+|+..+..+. .+++|..+.+.. ...+|.+++.+
T Consensus 489 ~D~-~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEV-STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCC-CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 998 788999999999999998765 568998765544 35677777665
No 205
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.22 E-value=7.4e-11 Score=104.49 Aligned_cols=94 Identities=30% Similarity=0.537 Sum_probs=82.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~---~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 615 (800)
|.|+|++|++|...+..+..+|||++.+.+. ..+|+++.++.||.|||+|.|.+.....+.|.|+|||.+. ...+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 7899999999999887678999999999875 6999999999999999999998766557899999999998 66789
Q ss_pred eeEEEEEEceecCCCCce
Q 003728 616 SLGHAEINFVKSDISDLA 633 (800)
Q Consensus 616 ~iG~~~i~l~~l~~~~~~ 633 (800)
++|.+.+++.++..+...
T Consensus 81 ~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eeEEEEEEHHHcccCccc
Confidence 999999999888765543
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.18 E-value=2e-10 Score=101.29 Aligned_cols=100 Identities=50% Similarity=0.865 Sum_probs=86.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCceeE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~lG 80 (800)
|.|+|++|++|+.....+.++|||.+.+.. ...+|+++.++.||.|||.|.|.+.. ....|.|+||+.+....+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 579999999998877777899999999987 88999999999999999999999966 6789999999999877789999
Q ss_pred eEEeeCccccccCCCCCccEEEEc
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
.+.+++.++.. .......|++|
T Consensus 81 ~~~~~l~~l~~--~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLD--SGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhh--cCCcCcceecC
Confidence 99999999861 12245678765
No 207
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.16 E-value=1.5e-10 Score=108.05 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEECCe---eeEeeccCCCCC--CeEeeEEEEEeeCC--------------
Q 003728 539 LTVALIKGDNLAAVD--SSGF--CDPYVVFTCNGK---SRTSSIKFQQCD--PMWNEIFEYDAMDE-------------- 595 (800)
Q Consensus 539 L~V~vi~a~~L~~~d--~~g~--sDPYv~v~~~~~---~~~T~v~~~t~n--P~WnE~f~f~~~~~-------------- 595 (800)
|+|.|.+|++++..+ ..|. +||||++.+.+. +++|.+..+++| |.||+.|.|.+...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966544 3664 999999998753 399999999999 99999999887542
Q ss_pred ---------CCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCC
Q 003728 596 ---------PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISD 631 (800)
Q Consensus 596 ---------~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~ 631 (800)
....|.++|||.|. +++||+||.++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 23569999999999 999999999999999876544
No 208
>PLN02223 phosphoinositide phospholipase C
Probab=99.15 E-value=4.6e-10 Score=125.67 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEec
Q 003728 2 KLVVRVIEARNIPAM-----DQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~-----d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~ 70 (800)
+|.|+|+.|.+++.. +.....||||+|.+.+ .+.+|++..++.||+|||+|.|.+..++ ..|+|+|+|+
T Consensus 410 ~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~ 489 (537)
T PLN02223 410 ILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDY 489 (537)
T ss_pred EEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEec
Confidence 689999999987521 2234589999999943 3577888778999999999999996555 6799999999
Q ss_pred CCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 71 d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
|...+++|+|+..+|+..+.. +.++++|.++.+.. -..-.|.+++.+
T Consensus 490 D~~~~ddfiGQ~~LPv~~Lr~------GyR~VpL~~~~g~~--l~~~~Ll~~f~~ 536 (537)
T PLN02223 490 EVSTADAFCGQTCLPVSELIE------GIRAVPLYDERGKA--CSSTMLLTRFKW 536 (537)
T ss_pred CCCCCCcEEEEEecchHHhcC------CceeEeccCCCcCC--CCCceEEEEEEe
Confidence 988889999999999999854 57899999877653 234577777765
No 209
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=4.6e-10 Score=99.33 Aligned_cols=90 Identities=44% Similarity=0.790 Sum_probs=80.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCc
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ---RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDD 77 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~---~~kTkv~~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~ 77 (800)
+|.|+|++|++|......+..+|||.+.+... ..+|+++.++.||.|||+|.|.+... ...|.|+|||.+....+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 47899999999998876667999999999865 79999999999999999999999666 899999999999877789
Q ss_pred eeEeEEeeCccccc
Q 003728 78 FVGFLKIPVSRVFD 91 (800)
Q Consensus 78 ~lG~v~i~l~~l~~ 91 (800)
++|.+.+++.++..
T Consensus 81 ~~G~~~~~l~~~~~ 94 (101)
T smart00239 81 FIGQVTIPLSDLLL 94 (101)
T ss_pred eeEEEEEEHHHccc
Confidence 99999999988854
No 210
>PLN02270 phospholipase D alpha
Probab=99.13 E-value=4e-10 Score=130.96 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=101.1
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCee-eEeeccCCC-CCCeEeeEEEEEeeCCC
Q 003728 537 WLLTVALIKGDNLAAVD------------------SSGFCDPYVVFTCNGKS-RTSSIKFQQ-CDPMWNEIFEYDAMDEP 596 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d------------------~~g~sDPYv~v~~~~~~-~~T~v~~~t-~nP~WnE~f~f~~~~~~ 596 (800)
|.|.|+|++|++|+.++ ..++|||||.|.+++.+ .+|+++.+. .||+|||+|.+.+ ...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~-ah~ 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC-AHM 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee-ccC
Confidence 67999999999998631 13678999999999887 899999885 6999999999965 444
Q ss_pred CcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCcc--ccceEEEEEEecC
Q 003728 597 PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQAC--QSKLHLRIFLNNT 660 (800)
Q Consensus 597 ~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~--~G~l~l~~~~~~~ 660 (800)
...+.|.|.|.|. ++.. +||.+.|++.++..++..+.||++.+..++.. ..+||++++|...
T Consensus 87 ~~~v~f~vkd~~~-~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNP-IGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCc-cCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 6899999999998 7655 99999999999999888899999987665544 4589999987653
No 211
>PLN02952 phosphoinositide phospholipase C
Probab=99.12 E-value=4.8e-10 Score=128.22 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=91.5
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEE
Q 003728 537 WLLTVALIKGDNLAAV------DSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~------d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 605 (800)
..|+|+|+.|++|+.. +.....||||+|.+.| .+++|+++.++.||.|||+|.|.+..+.-..|+|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4699999999987532 1123359999999754 3389999999999999999999987765677999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc-cccceEEEEEE
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~~~~ 657 (800)
|+|. .+.++|+|++.+++..+..+. .|++|..+.+.. ....|.+++.+
T Consensus 550 D~D~-~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDM-SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCC-CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9998 788999999999999998776 499998654432 34455555543
No 212
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.10 E-value=2.3e-11 Score=135.11 Aligned_cols=96 Identities=26% Similarity=0.443 Sum_probs=85.3
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-------eEeeccCCCCCCeEeeEEEEEeeCCCCc----EE
Q 003728 532 AQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-------RTSSIKFQQCDPMWNEIFEYDAMDEPPS----ML 600 (800)
Q Consensus 532 ~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-------~~T~v~~~t~nP~WnE~f~f~~~~~~~~----~L 600 (800)
+.+....|.|.|+.|+++.+.|.+|.|||||+|.+..+. .+|+|+++|+||+|+|+|+|.+..+++. .+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 344557789999999999999999999999999987654 8999999999999999999999777654 49
Q ss_pred EEEEEEccCCCCCCceeEEEEEEceecC
Q 003728 601 DVEVYDFDGPFNEATSLGHAEINFVKSD 628 (800)
Q Consensus 601 ~v~V~D~d~~~~~dd~iG~~~i~l~~l~ 628 (800)
.|+|+|+|- ++.+||-|++.+.|..+.
T Consensus 1022 ~FTVMDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1022 HFTVMDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEEeeccce-ecccccchHHHHhhCCCC
Confidence 999999998 899999999999988764
No 213
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.09 E-value=5.8e-10 Score=104.08 Aligned_cols=90 Identities=32% Similarity=0.443 Sum_probs=77.2
Q ss_pred EEEEEEEEeecCCCCCC--CCC--CCcEEEEEECC---eEEEeeeccCCCC--CeeccEEEEEEeC--------------
Q 003728 2 KLVVRVIEARNIPAMDQ--NGY--SDPYVRLQLGR---QRFKTKVVRKSLS--PSWEEEFSFKVED-------------- 58 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~--~g~--~DPyv~v~l~~---~~~kTkv~~~t~n--P~WnE~f~f~v~~-------------- 58 (800)
+|+|.|.+|+|++..+. .|. +||||++.+.+ .+++|.+..+++| |.||+.|.|++.-
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 48999999999765443 564 99999999964 5699999999999 9999999998732
Q ss_pred ----------CCCEEEEEEEecCCCCCCceeEeEEeeCccccc
Q 003728 59 ----------LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFD 91 (800)
Q Consensus 59 ----------~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~ 91 (800)
....|.++|||.|.+++|++||++.++|..+..
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 136899999999999999999999999998864
No 214
>PLN02952 phosphoinositide phospholipase C
Probab=99.06 E-value=1.8e-09 Score=123.59 Aligned_cols=116 Identities=27% Similarity=0.328 Sum_probs=90.8
Q ss_pred EEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEe
Q 003728 2 KLVVRVIEARNIPAM------DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~------d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D 69 (800)
+|.|+|+.|.+|+.. +.....||||+|.+- ..+.+|+++.++.||+|||+|.|.+..++ ..|+|.|||
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D 550 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVRE 550 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEe
Confidence 689999999987531 112335999999984 35789999999999999999999996544 679999999
Q ss_pred cCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 70 ~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
+|..+.++|+|+..+|+..+.. +.+|++|.++.+.. ...-.|.+++.|
T Consensus 551 ~D~~~~ddfiGq~~lPv~~Lr~------GyR~VpL~~~~G~~--l~~a~Llv~f~~ 598 (599)
T PLN02952 551 YDMSEKDDFGGQTCLPVSELRP------GIRSVPLHDKKGEK--LKNVRLLMRFIF 598 (599)
T ss_pred cCCCCCCCeEEEEEcchhHhcC------CceeEeCcCCCCCC--CCCEEEEEEEEe
Confidence 9988889999999999999954 56899998776543 223455555554
No 215
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.05 E-value=1e-09 Score=125.37 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=93.8
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECCe-----eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEE
Q 003728 537 WLLTVALIKGDNLAAV------DSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~------d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 605 (800)
..|.|+|+.|++++.. +.....||||+|.+-|. +++|++..++.||.|||+|+|.+..+.-..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5699999999987521 22335799999997542 278889999999999999999987766778999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc-cccceEEEEEE
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~~~~ 657 (800)
|+|. ...|+|+|++.+++..|..+.. .++|..+.|.. ...+|.+++.+
T Consensus 549 d~d~-~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDI-NEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCC-CCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 9998 7899999999999999987754 57888765544 35577777665
No 216
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.02 E-value=1.1e-09 Score=124.67 Aligned_cols=117 Identities=21% Similarity=0.378 Sum_probs=95.3
Q ss_pred EEEEEEEEeecCCCC-CC---CCCCCcEEEEEECCee-----eEee-ccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEc
Q 003728 538 LLTVALIKGDNLAAV-DS---SGFCDPYVVFTCNGKS-----RTSS-IKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDF 607 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~-d~---~g~sDPYv~v~~~~~~-----~~T~-v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~ 607 (800)
.|.|+|+.|++++.. +. ...+||||.|.+.|.. .+|+ +..++-||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 699999999966554 22 3568999999987655 6677 888999999999999999887788899999999
Q ss_pred cCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc-cccceEEEEEEe
Q 003728 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLN 658 (800)
Q Consensus 608 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~~~~~ 658 (800)
|. .++|||+|+..+|+..+..+..+ ++|.++.|.. ...+|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 99 88999999999999999887655 6777654432 356777777765
No 217
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.99 E-value=3.7e-09 Score=120.81 Aligned_cols=116 Identities=24% Similarity=0.299 Sum_probs=92.8
Q ss_pred EEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEe
Q 003728 2 KLVVRVIEARNIPAM------DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~------d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D 69 (800)
+|.|+|+.+.+++.. +.....||||+|.+- ..+.+|++..++.||+|||+|.|.+.-++ ..|+|.|+|
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d 549 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHE 549 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEE
Confidence 689999999987521 222347999999993 34578998888999999999999996554 789999999
Q ss_pred cCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 70 ~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
+|...+++|+|+..+|+..|.. +.+.++|.++.+.. -..-.|.+++.+
T Consensus 550 ~d~~~~ddfiGQ~~lPv~~Lr~------GyR~V~L~~~~G~~--l~~~~Ll~~f~~ 597 (598)
T PLN02230 550 HDINEKDDFGGQTCLPVSEIRQ------GIHAVPLFNRKGVK--YSSTRLLMRFEF 597 (598)
T ss_pred CCCCCCCCEEEEEEcchHHhhC------ccceEeccCCCcCC--CCCCeeEEEEEe
Confidence 9988899999999999999954 57789999877653 234577777765
No 218
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.97 E-value=4.6e-09 Score=119.84 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=92.2
Q ss_pred eEEEEEEEEeecCC----CC--CCCCCCCcEEEEEECCe-----eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEE
Q 003728 537 WLLTVALIKGDNLA----AV--DSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (800)
Q Consensus 537 ~~L~V~vi~a~~L~----~~--d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 605 (800)
..|+|+|+.|++++ .. +.....||||+|.+.|- +++|+++.++.||.|||+|+|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 46999999999853 21 22345799999997543 378999999999999999999987766678999999
Q ss_pred EccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc-cccceEEEEEE
Q 003728 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (800)
Q Consensus 606 D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~~~~ 657 (800)
|+|. ...|+|||++.+++..+..+.. .++|..+.+.. ...+|.+++.+
T Consensus 532 d~D~-~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDM-SEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCC-CCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEe
Confidence 9998 7889999999999999987654 57887665543 35566666654
No 219
>PLN02270 phospholipase D alpha
Probab=98.95 E-value=7.8e-09 Score=120.40 Aligned_cols=124 Identities=19% Similarity=0.380 Sum_probs=102.6
Q ss_pred EEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCeE-EEeeeccCC-CCCeeccEEEEEEeCCCC
Q 003728 2 KLVVRVIEARNIPAMD------------------QNGYSDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKD 61 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d------------------~~g~~DPyv~v~l~~~~-~kTkv~~~t-~nP~WnE~f~f~v~~~~~ 61 (800)
+|.|+|++|++|++.+ ..+.+||||.|.+++.+ .+|+++.+. .||.|+|.|.+++.....
T Consensus 9 ~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~ 88 (808)
T PLN02270 9 TLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMAS 88 (808)
T ss_pred ceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcc
Confidence 5889999999998631 12468999999998765 799999884 699999999999977789
Q ss_pred EEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCC
Q 003728 62 ELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (800)
Q Consensus 62 ~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~~~ 130 (800)
.+.|.|.|.+.++ ..+||.+.||+.++...+ ....||++....++.. +..-.|++++.|.+...
T Consensus 89 ~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~-~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 89 NIIFTVKDDNPIG-ATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPI-HGGSKIHVKLQYFEVTK 152 (808)
T ss_pred eEEEEEecCCccC-ceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcC-CCCCEEEEEEEEEEccc
Confidence 9999999999876 569999999999997643 4789999998776542 33469999999988643
No 220
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.94 E-value=9.8e-09 Score=117.20 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=92.1
Q ss_pred EEEEEEEEeecCC--CC----CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEe
Q 003728 2 KLVVRVIEARNIP--AM----DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (800)
Q Consensus 2 ~L~V~Vi~A~~L~--~~----d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D 69 (800)
+|.|+|+.|.+++ .. +.....||||+|.+. ..+.+|+++.++.||+|||+|.|.+.-++ ..|+|.|||
T Consensus 453 ~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d 532 (581)
T PLN02222 453 TLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHE 532 (581)
T ss_pred eEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEE
Confidence 6899999998753 11 123457999999994 35689999999999999999999996554 789999999
Q ss_pred cCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 70 ~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
+|....++|+|+..+|+..|.. +.+.++|.++.+.. -..-.|.+++.+
T Consensus 533 ~D~~~~ddfigq~~lPv~~Lr~------GyR~V~L~~~~g~~--l~~a~Lfv~~~~ 580 (581)
T PLN02222 533 YDMSEKDDFGGQTCLPVWELSQ------GIRAFPLHSRKGEK--YKSVKLLVKVEF 580 (581)
T ss_pred CCCCCCCcEEEEEEcchhhhhC------ccceEEccCCCcCC--CCCeeEEEEEEe
Confidence 9987889999999999999854 57789998877653 234577777765
No 221
>PLN02228 Phosphoinositide phospholipase C
Probab=98.94 E-value=7e-09 Score=118.06 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECCe-----eeEeeccCCCCCCeE-eeEEEEEeeCCCCcEEEEEE
Q 003728 537 WLLTVALIKGDNLAA---V---DSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMW-NEIFEYDAMDEPPSMLDVEV 604 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~---~---d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~W-nE~f~f~~~~~~~~~L~v~V 604 (800)
..|+|+|+.|++|+. . +.....||||+|.+.|- +++|++++++.||.| ||+|+|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998731 1 12334799999997543 378999999999999 99999998776667899999
Q ss_pred EEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc-cccceEEEEEEec
Q 003728 605 YDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLNN 659 (800)
Q Consensus 605 ~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~~~~~~ 659 (800)
+|+|. .+.|+|+|++.|++..+..+. ..++|.++.+.. ...+|.+++.+..
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 99998 788999999999999997765 357887665544 4667888888763
No 222
>PLN02228 Phosphoinositide phospholipase C
Probab=98.93 E-value=1.2e-08 Score=116.23 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=95.3
Q ss_pred EEEEEEEEeecCCC---CC---CCCCCCcEEEEEEC-----CeEEEeeeccCCCCCee-ccEEEEEEeCCC-CEEEEEEE
Q 003728 2 KLVVRVIEARNIPA---MD---QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSW-EEEFSFKVEDLK-DELVISVL 68 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~---~d---~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~W-nE~f~f~v~~~~-~~L~i~V~ 68 (800)
+|.|+|++|.+|+. .+ .....||||+|.+. ..+.+|+++.++.||+| ||+|.|.+..++ ..|+|.|+
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~ 511 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQ 511 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEE
Confidence 69999999998731 11 12347999999984 34679999988899999 999999996554 68999999
Q ss_pred ecCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 69 DEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 69 D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
|+|..+.++|+|+..+|+..|.. +.+.++|.+..+.. -....|.+++.+.+
T Consensus 512 D~d~~~~d~figq~~lPv~~Lr~------GYR~VpL~~~~G~~--l~~atLfv~~~~~~ 562 (567)
T PLN02228 512 DYDNDTQNDFAGQTCLPLPELKS------GVRAVRLHDRAGKA--YKNTRLLVSFALDP 562 (567)
T ss_pred eCCCCCCCCEEEEEEcchhHhhC------CeeEEEccCCCCCC--CCCeEEEEEEEEcC
Confidence 99987889999999999999853 57889998877652 34578999998864
No 223
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.92 E-value=5.5e-09 Score=119.12 Aligned_cols=117 Identities=25% Similarity=0.392 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEECC-----eEEEeeecc-CCCCCeeccEEEEEEeCCC-CEEEEEEEec
Q 003728 2 KLVVRVIEARNIPAMDQ----NGYSDPYVRLQLGR-----QRFKTKVVR-KSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~----~g~~DPyv~v~l~~-----~~~kTkv~~-~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~ 70 (800)
+|.|+|+.+.++++... ...+||||.|++-+ .+.+|+++. ++.||.|+|+|.|.+..++ .-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 59999999997755332 24589999999843 468999555 5899999999999997665 7899999999
Q ss_pred CCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 71 d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
|..++|+|+|+..+|+..|.. +.+-++|.++.+.. -..-.|.+++.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~------GyRhVpL~~~~G~~--~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ------GYRHVPLLSREGEA--LSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhC------ceeeeeecCCCCcc--ccceeEEEEEEEe
Confidence 998999999999999999953 56789999876652 4567888888774
No 224
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.91 E-value=4.3e-09 Score=124.19 Aligned_cols=95 Identities=21% Similarity=0.434 Sum_probs=83.8
Q ss_pred CeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCC
Q 003728 536 GWLLTVALIKGDNLAAVD--SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFN 612 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d--~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~ 612 (800)
-|+|.|+|.+|++|...| .++..|||+++.+.+.. .||+++++++||+|||+|-+.+ +...+.|.++|||++. +.
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~l-ns~~d~L~LslyD~n~-~~ 512 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL-NSFTDPLNLSLYDFNS-FK 512 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEe-cccCCceeEEEEeccc-cC
Confidence 488999999999999999 68999999999987665 7999999999999999999854 4557899999999888 89
Q ss_pred CCceeEEEEEEceecCCCCc
Q 003728 613 EATSLGHAEINFVKSDISDL 632 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~~ 632 (800)
+|+.+|++.++|..+.....
T Consensus 513 sd~vvG~~~l~L~~L~~~~~ 532 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPV 532 (1227)
T ss_pred CcceeeeEEechHHhhhccc
Confidence 99999999999987765443
No 225
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.87 E-value=5.7e-10 Score=124.18 Aligned_cols=119 Identities=33% Similarity=0.638 Sum_probs=99.6
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------EEEeeeccCCCCCeeccEE
Q 003728 4 VVRVIEARNIPAMDQNGYSDPYVRLQLGR-------------Q------------------RFKTKVVRKSLSPSWEEEF 52 (800)
Q Consensus 4 ~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-------------~------------------~~kTkv~~~t~nP~WnE~f 52 (800)
.|.+.+|+||.+++.+|.+|||+...+.. + -+.|.+.++|+||.|+|.|
T Consensus 117 ~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF 196 (1103)
T KOG1328|consen 117 NISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKF 196 (1103)
T ss_pred HHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhhe
Confidence 45567899999999999999999988721 0 1567888899999999999
Q ss_pred EEEEeCCC-CEEEEEEEecCC---------------------------------CC---CCceeEeEEeeCccccccCCC
Q 003728 53 SFKVEDLK-DELVISVLDEDK---------------------------------YF---NDDFVGFLKIPVSRVFDADNK 95 (800)
Q Consensus 53 ~f~v~~~~-~~L~i~V~D~d~---------------------------------~~---~d~~lG~v~i~l~~l~~~~~~ 95 (800)
.|.+.+.+ +.+++.+||+|. -+ .|+|+|++.|||.++...
T Consensus 197 ~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~--- 273 (1103)
T KOG1328|consen 197 QFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD--- 273 (1103)
T ss_pred eeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc---
Confidence 99997764 899999999986 01 278999999999999542
Q ss_pred CCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
..++||+|++++.++ +++|.++|.+++...
T Consensus 274 -Gld~WFkLepRS~~S--~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 274 -GLDQWFKLEPRSDKS--KVQGQVKLKLWLSTK 303 (1103)
T ss_pred -hHHHHhccCcccccc--cccceEEEEEEEeee
Confidence 257999999998775 799999999999876
No 226
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.87 E-value=7.8e-09 Score=90.62 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=69.7
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCC
Q 003728 539 LTVALIKGDNLAAVD---SSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 539 L~V~vi~a~~L~~~d---~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 614 (800)
|+|+|..|+|+...+ ..+++||||+|.+++. +.+|++ +.||.|||+|.|++. ....+.+.|||+.. +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC--Cee
Confidence 689999999999888 5788999999999988 578877 499999999999883 47789999999875 555
Q ss_pred ceeEEEEEEceecC
Q 003728 615 TSLGHAEINFVKSD 628 (800)
Q Consensus 615 d~iG~~~i~l~~l~ 628 (800)
-.||-.-+.++++.
T Consensus 74 ~Pi~llW~~~sdi~ 87 (109)
T cd08689 74 VPVGLLWLRLSDIA 87 (109)
T ss_pred cceeeehhhHHHHH
Confidence 57888888777654
No 227
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.85 E-value=1.2e-08 Score=115.09 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=109.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe------eeEeeccCCCCCCeEe-eEEEEEeeCCCCcEEEEEEEEcc
Q 003728 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK------SRTSSIKFQQCDPMWN-EIFEYDAMDEPPSMLDVEVYDFD 608 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~------~~~T~v~~~t~nP~Wn-E~f~f~~~~~~~~~L~v~V~D~d 608 (800)
...|.|.|+.|+.|+..+ .|..-|||+|.+-|. .++|.++.+++||+|| |.|+|++..+.-.-|++.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 367999999999999654 455679999996432 3888899999999999 99999998887888999999999
Q ss_pred CCCCCCceeEEEEEEceecCCCCceeEEEECCccC-cCccccceEEEEEEecCCCCcchhhh----h-hhhhhhccccc-
Q 003728 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL-AQACQSKLHLRIFLNNTKGSNVVKEY----L-TKMEKEVGKKI- 681 (800)
Q Consensus 609 ~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~-~~~~~G~l~l~~~~~~~~~~~~~~~~----l-~k~ek~vgkk~- 681 (800)
. ++...|||+|..|+..+..+- .-+||...- ..-.-..|.+.+.+-...+.+...-. | .+.+...|..+
T Consensus 1143 m-fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~~~~~~~sS~~~lr~R~~~~ngqlf~ 1218 (1267)
T KOG1264|consen 1143 M-FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLESEEELYSSCRQLRRRQEELNGQLFL 1218 (1267)
T ss_pred c-cCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccccCccccccchhHHHHHHHhhhcCCeec
Confidence 9 888889999999999987654 347886432 22234566666665544443322211 1 23332334332
Q ss_pred -cccCCCcccccccccC
Q 003728 682 -NLRSPQTNSAFQKLFG 697 (800)
Q Consensus 682 -~~~sr~~n~~f~~~F~ 697 (800)
..+.+.+++..++.|+
T Consensus 1219 ~~~~~~lr~s~~d~~~~ 1235 (1267)
T KOG1264|consen 1219 YDTHQNLRNSNRDALVK 1235 (1267)
T ss_pred hhhhhhhhhcccccccc
Confidence 2334455566666664
No 228
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.84 E-value=1.3e-08 Score=114.65 Aligned_cols=119 Identities=24% Similarity=0.412 Sum_probs=93.2
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeE-EEeeeccCCCCCeec-cEEEEEEeCCC-CEEEEEEEecCC
Q 003728 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQR-FKTKVVRKSLSPSWE-EEFSFKVEDLK-DELVISVLDEDK 72 (800)
Q Consensus 1 ~~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~-~kTkv~~~t~nP~Wn-E~f~f~v~~~~-~~L~i~V~D~d~ 72 (800)
|+|.|.|+.||+|+... .|.+.|||.|.+- ..+ ++|.|+.+++||+|| |.|+|++.+++ ..|++.|+|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 68999999999999544 3457799999983 234 555666678999999 99999997665 789999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
++...|||++..|+..+.. +.+-++|.. +.+++-....|++.+..-+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~------GfRsVpLkN--~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKS------GFRSVPLKN--GYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhc------cceeeeccc--CchhhhhhhhheeeeEeccc
Confidence 9988999999999999853 455567764 33444556777777777544
No 229
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.84 E-value=5.5e-09 Score=113.58 Aligned_cols=124 Identities=15% Similarity=0.389 Sum_probs=98.9
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeEeeccCCCCCCeEe-eEEEEEeeCC--CCcEEEEEEEEccCCCC
Q 003728 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWN-EIFEYDAMDE--PPSMLDVEVYDFDGPFN 612 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~~~~~~T~v~~~t~nP~Wn-E~f~f~~~~~--~~~~L~v~V~D~d~~~~ 612 (800)
|.|-|+|..|++|+-+|. ....|.||.|++++..++|.+-.+++||.|| +.|.|++.+. ....|.|+++|+|. .+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 568999999999999987 4567999999999999999999999999999 7899988543 35679999999999 99
Q ss_pred CCceeEEEEEEceecCCCC----------ceeEEEECCccCcCccccceEEEEEEecCCC
Q 003728 613 EATSLGHAEINFVKSDISD----------LADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~----------~~~~w~~L~~k~~~~~~G~l~l~~~~~~~~~ 662 (800)
.+|-||.+.|++..+.... ....|+|+.+.- ....|.|.+-+.+..-++
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgirgeinvivkvdlfnd 140 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGIRGEINVIVKVDLFND 140 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccccceeEEEEEEeehhh
Confidence 9999999999997764322 226799997532 123567776666444333
No 230
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.84 E-value=1.3e-08 Score=89.18 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=72.7
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCce
Q 003728 3 LVVRVIEARNIPAMD---QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d---~~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~ 78 (800)
|.|+|.+|+|+.-.. ..+.+||||.+.+++. +.+|++ +.||.|||+|.|++ +....+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC-Ceecc
Confidence 689999999998777 5678999999999876 888987 47999999999999 468999999999876 55668
Q ss_pred eEeEEeeCccccc
Q 003728 79 VGFLKIPVSRVFD 91 (800)
Q Consensus 79 lG~v~i~l~~l~~ 91 (800)
||..-++++++..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998864
No 231
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.76 E-value=1.6e-08 Score=109.97 Aligned_cols=122 Identities=30% Similarity=0.543 Sum_probs=102.0
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEEEeeeccCCCCCeecc-EEEEEEeCC---CCEEEEEEEecCCCCCC
Q 003728 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGRQRFKTKVVRKSLSPSWEE-EFSFKVEDL---KDELVISVLDEDKYFND 76 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE-~f~f~v~~~---~~~L~i~V~D~d~~~~d 76 (800)
+|.|+|..||+||.+|+. ...|.||.+.+++..++|.|..+++||.||. -|.|+|.+. .+.|.|.+.|+|.++.+
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysan 83 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSAN 83 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccc
Confidence 588999999999999974 4589999999999999999999999999995 589999553 47899999999999999
Q ss_pred ceeEeEEeeCcccccc-------CCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 77 DFVGFLKIPVSRVFDA-------DNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 77 ~~lG~v~i~l~~l~~~-------~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
+-||.+.|++..+... ..+.....|+++.+.-. ..+|+|.+-+...-
T Consensus 84 daigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih----girgeinvivkvdl 137 (1169)
T KOG1031|consen 84 DAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH----GIRGEINVIVKVDL 137 (1169)
T ss_pred cccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc----cccceeEEEEEEee
Confidence 9999999999887632 22334568999997653 56899998776543
No 232
>PLN02352 phospholipase D epsilon
Probab=98.52 E-value=5.7e-07 Score=104.93 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=88.6
Q ss_pred CeEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccC
Q 003728 536 GWLLTVALIKGDNLAAV----DSS-GFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDG 609 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~----d~~-g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~ 609 (800)
-|.|.++|.+|+-+... +.. ...||||.|.+++.+ .+| .+.-||+|||+|.+.+.......+.|.|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC--
Confidence 36799999999844332 111 123999999999877 566 5566999999999976544336899999872
Q ss_pred CCCCCceeEEEEEEceecCCCCc-eeEEEECCccCcCcccc-ceEEEEEEecC
Q 003728 610 PFNEATSLGHAEINFVKSDISDL-ADVWIPLQGKLAQACQS-KLHLRIFLNNT 660 (800)
Q Consensus 610 ~~~~dd~iG~~~i~l~~l~~~~~-~~~w~~L~~k~~~~~~G-~l~l~~~~~~~ 660 (800)
..+||.+.|++.++..++. .+.||++.+..++...| +||++++|...
T Consensus 84 ----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 4599999999999988766 79999998766655555 88899988643
No 233
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=5.9e-08 Score=100.45 Aligned_cols=157 Identities=22% Similarity=0.365 Sum_probs=118.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEE--eC-C-CCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV--ED-L-KDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v--~~-~-~~~L~i~V~D~d~ 72 (800)
.+.+++..|++|.+++.++..|||+.+.++. .+.+|++..+++||.|+|+..... .+ . ...+++.|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 3678999999999999999999999999964 347888999999999998876655 22 1 3678899999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEE--cccCC-CCCCCCcceEEEEEEEEEecCCCCcccCCCCCcCcccCCCC
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHS--LQPKN-KKSKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKTTES 149 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~--L~~~~-~~~~~~~~G~I~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (800)
+..++++|+..+++..+...+.. ....|+. +.... .......+|+|.+++.|... -+...+..++|.++
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~k-~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~-------~~~l~vt~iRc~~l 245 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQRK-SFNICLEKSLPSERADRDEDEERGAILISLAYSST-------TPGLIVTIIRCSHL 245 (362)
T ss_pred cccccCcccchhhhhccChhhcc-hhhhhhhccCCcccccccchhhccceeeeeccCcC-------CCceEEEEEEeeee
Confidence 99999999999999988654432 2233433 22111 11223678999999998543 23456778899999
Q ss_pred CCCCCCCCCCCCCCCCc
Q 003728 150 PKRSFSGPSNAPSPVRV 166 (800)
Q Consensus 150 ~~~s~~~~s~~~s~~~~ 166 (800)
.++++++++........
T Consensus 246 ~ssDsng~sDpyvS~~l 262 (362)
T KOG1013|consen 246 ASSDSNGYSDPYVSQRL 262 (362)
T ss_pred eccccCCCCCccceeec
Confidence 99999999987755433
No 234
>PLN02352 phospholipase D epsilon
Probab=98.28 E-value=6.9e-06 Score=96.10 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=89.1
Q ss_pred EEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEecCCCC
Q 003728 2 KLVVRVIEARNIPAM----DQN-GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~----d~~-g~~DPyv~v~l~~~~-~kTkv~~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~d~~~ 74 (800)
+|.++|.+|+-+... +.. ...||||.|.+++.+ .+| .+..||+|+|.|.+++.... ..+.++|.|
T Consensus 11 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----- 82 (758)
T PLN02352 11 TLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----- 82 (758)
T ss_pred ceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----
Confidence 589999999843221 111 123999999998765 577 55669999999999996555 789999988
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~~~~ 131 (800)
...+||.+.||+.++...+ ...+.||++....++.. . ...|++++.|.+....
T Consensus 83 ~~~~ig~~~~p~~~~~~g~--~~~~~~~~~~~~~~~p~-~-~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA--SFINGFFPLIMENGKPN-P-ELKLRFMLWFRPAELE 135 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC--cccceEEEcccCCCCCC-C-CCEEEEEEEEEEhhhC
Confidence 2679999999999997632 22689999998776643 2 2699999999887443
No 235
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.10 E-value=1.7e-06 Score=100.94 Aligned_cols=86 Identities=29% Similarity=0.523 Sum_probs=78.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeccEEEEEEe-CCCCEEEEEEEecCCCCCCcee
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFV 79 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~--~kTkv~~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~~~~d~~l 79 (800)
++|+|++|-+|.+.|.+|.+|||+.+.+|++. -++..+.+++||+|++.|.+... +....|.+.|||+|.+++|+.|
T Consensus 615 vrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~i 694 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKI 694 (1105)
T ss_pred EEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchh
Confidence 67999999999999999999999999999876 77888999999999999998873 4568899999999999999999
Q ss_pred EeEEeeCcc
Q 003728 80 GFLKIPVSR 88 (800)
Q Consensus 80 G~v~i~l~~ 88 (800)
|+..++|+.
T Consensus 695 get~iDLEn 703 (1105)
T KOG1326|consen 695 GETTIDLEN 703 (1105)
T ss_pred hceehhhhh
Confidence 999998754
No 236
>PLN02964 phosphatidylserine decarboxylase
Probab=97.92 E-value=1.1e-05 Score=93.70 Aligned_cols=94 Identities=13% Similarity=0.258 Sum_probs=78.3
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCC
Q 003728 532 AQGDGWLLTVALIKGDNLAAVDSSGFCDPYVV-FTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (800)
Q Consensus 532 ~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~-v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 610 (800)
+..-.|...+++++|+ ++ ..|||++ +++|.+.++|.+.++|+||+|||...|.+........++.|||++.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~- 120 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR- 120 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-
Confidence 3345689999999998 44 3699766 5688888999999999999999999998866655668999999999
Q ss_pred CCCCceeEEEEEEceecCCCCce
Q 003728 611 FNEATSLGHAEINFVKSDISDLA 633 (800)
Q Consensus 611 ~~~dd~iG~~~i~l~~l~~~~~~ 633 (800)
+++++++|.++++|.++...+..
T Consensus 121 ~s~n~lv~~~e~~~t~f~~kqi~ 143 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQEPE 143 (644)
T ss_pred CCHHHhhhheeecHhhccHHHHH
Confidence 99999999999998777655543
No 237
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.87 E-value=3.2e-05 Score=86.53 Aligned_cols=185 Identities=18% Similarity=0.117 Sum_probs=122.2
Q ss_pred CCCCCCCCCCCcEEEEEEC-------------------CeeeEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccC
Q 003728 549 LAAVDSSGFCDPYVVFTCN-------------------GKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDG 609 (800)
Q Consensus 549 L~~~d~~g~sDPYv~v~~~-------------------~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~ 609 (800)
+.+.|..+++||-|.+... .+..+|.++.+.+||.|-+.|.+++..+..+.|+++++|-|.
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~ 81 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS 81 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCC
Confidence 4445666777777776541 112589999999999999999999999989999999999885
Q ss_pred C---CCCCceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEecCCCCcc---hhhh-hhhhhhhcccc--
Q 003728 610 P---FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKGSNV---VKEY-LTKMEKEVGKK-- 680 (800)
Q Consensus 610 ~---~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~~~~~~~~---~~~~-l~k~ek~vgkk-- 680 (800)
. ++.+||+|+++..+..+........-+-++. ......|.+.++++-....+... +..+ |++++ .++++
T Consensus 82 ~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd-~f~ksd~ 159 (529)
T KOG1327|consen 82 RTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-GKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKD-FFSKSDP 159 (529)
T ss_pred ccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-CccCCcccEEEEeecccccCceeeeeeeeeecCccc-ccccCCc
Confidence 1 3567899999999998875543332222322 13445777777777433222111 1111 44444 33333
Q ss_pred ccccCCCc-ccccccccCCCccceeeecccceeee-ecccc----cceeeecceeEEeccCCCc
Q 003728 681 INLRSPQT-NSAFQKLFGLPPEEFLINDFTCHLKR-KMLLQ----GRLFLSARIIGFHANLFGH 738 (800)
Q Consensus 681 ~~~~sr~~-n~~f~~~F~lp~~E~l~~~~~c~l~~-~~~~~----G~ly~s~~~~cf~s~~~g~ 738 (800)
|....++- .+..+. +..+|.+.++.++.|.. .++.+ +..-.+...+|++.+..|.
T Consensus 160 ~l~~~~~~~d~s~~~---~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQM---LYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred ceEEEEecCCCceee---ccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCC
Confidence 22222221 222333 34589999999999988 66666 5667888899999999875
No 238
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.86 E-value=1.4e-05 Score=94.42 Aligned_cols=103 Identities=30% Similarity=0.466 Sum_probs=84.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEE---eCC-CCEEEEEEEecCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV---EDL-KDELVISVLDEDK 72 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v---~~~-~~~L~i~V~D~d~ 72 (800)
+|.|-|.-|++|+-......+||||+.++.+ .++||+++++|.||.|||...+.- ... ...|.++||..+.
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~ 1604 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG 1604 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc
Confidence 6889999999996655555699999999963 369999999999999999998873 222 4899999999999
Q ss_pred CCCCceeEeEEeeCccccccCCCCCccEEEEcccC
Q 003728 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (800)
Q Consensus 73 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~ 107 (800)
+..+.|+|.+.|||.++.... ....||.|...
T Consensus 1605 ~~en~~lg~v~i~L~~~~l~k---E~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1605 LLENVFLGGVNIPLLKVDLLK---ESVGWYNLGAC 1636 (1639)
T ss_pred eeeeeeeeeeecchhhcchhh---hhcceeecccc
Confidence 899999999999999885322 24589999753
No 239
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.84 E-value=1.1e-05 Score=95.12 Aligned_cols=105 Identities=25% Similarity=0.328 Sum_probs=87.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeEeeccCCCCCCeEeeEEEEE-eeC--CCCcEEEEEEEE
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYD-AMD--EPPSMLDVEVYD 606 (800)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~-~~~--~~~~~L~v~V~D 606 (800)
..++|+|-|..|++|+-..-+...||||+.++--. ++||+++.+|.||.+||....+ +.. ....+|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 45889999999999966554667999999997422 2899999999999999998875 211 224679999999
Q ss_pred ccCCCCCCceeEEEEEEceecCCCCceeEEEECC
Q 003728 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (800)
Q Consensus 607 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 640 (800)
.+. +..+.++|.+.|+|.++........||+|.
T Consensus 1602 ~~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGG-LLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccc-eeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 998 889999999999999998877777999995
No 240
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=3e-05 Score=80.77 Aligned_cols=85 Identities=32% Similarity=0.476 Sum_probs=73.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~ 73 (800)
.|.|+++++.+|..+|.+|-+||||...+.. .+++|.+.+++++|.||++|.|.+.+. ...+.|.|||.+..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G 313 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG 313 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC
Confidence 4789999999999999999999999999852 468999999999999999999999543 47899999999997
Q ss_pred CCCceeEeEEeeC
Q 003728 74 FNDDFVGFLKIPV 86 (800)
Q Consensus 74 ~~d~~lG~v~i~l 86 (800)
...+++|-+..-+
T Consensus 314 ~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 314 KSNDSIGGSMLGG 326 (362)
T ss_pred cCccCCCcccccc
Confidence 7888888765433
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.51 E-value=0.00014 Score=66.19 Aligned_cols=100 Identities=22% Similarity=0.415 Sum_probs=75.1
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeeccCCCCCeeccEEEEEEe-----CC-
Q 003728 3 LVVRVIEARNIPAMDQ-------------NGYSDPYVRLQL----GRQRFKTKVVRKSLSPSWEEEFSFKVE-----DL- 59 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~-------------~g~~DPyv~v~l----~~~~~kTkv~~~t~nP~WnE~f~f~v~-----~~- 59 (800)
|.|.|.+|.+|.+.-. .-.-++||++++ +.+.++|+++.++-.|.|+..++|.++ +.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678888888853211 112689999996 356799999999999999999999873 11
Q ss_pred ----------CCEEEEEEEecCCC----------CCCceeEeEEeeCccccccCCCCCccEEEEc
Q 003728 60 ----------KDELVISVLDEDKY----------FNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (800)
Q Consensus 60 ----------~~~L~i~V~D~d~~----------~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L 104 (800)
...+.++||+...- .+|-.||.+.||+.+|+... ..-.+||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r--sGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR--SGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc--cCccccccC
Confidence 35899999997642 24568999999999998633 345789875
No 242
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.40 E-value=4.9e-05 Score=85.81 Aligned_cols=87 Identities=26% Similarity=0.333 Sum_probs=69.8
Q ss_pred cCCCcccccccccCCCccceeeecccceeee---ecccccceeeecceeEEeccCCCceeEEEEEccccceEEEcCCccc
Q 003728 684 RSPQTNSAFQKLFGLPPEEFLINDFTCHLKR---KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLS 760 (800)
Q Consensus 684 ~sr~~n~~f~~~F~lp~~E~l~~~~~c~l~~---~~~~~G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~k~~~~~~ 760 (800)
..+.+++.| ..|+|| |.|...-.|.++. ..+.+|+||+|.+++||.|..+. .+.+++|+..|..||+.+. +
T Consensus 5 ~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~--s 78 (671)
T KOG4347|consen 5 DARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDD--S 78 (671)
T ss_pred hhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCc--c
Confidence 457888899 999999 9999999999988 56788999999999999999977 4899999999999999982 2
Q ss_pred cCCCCeEEEEEecCCc
Q 003728 761 SMGSPVIVMTLRQGRG 776 (800)
Q Consensus 761 ~~~~~~~~~~~~~~~~ 776 (800)
+.-...|.++++.+-|
T Consensus 79 s~~~~~i~~~~~~~~~ 94 (671)
T KOG4347|consen 79 SLFTQLISLFTSNMVG 94 (671)
T ss_pred ccchhhhHHhhcCcce
Confidence 2223345555554444
No 243
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.36 E-value=0.00027 Score=79.36 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=69.0
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEE--CCee----eEeeccCCCCCCeEeeEEEEE----eeCCCCcEEEEEEEEccCCC
Q 003728 542 ALIKGDNLAAVDSSGFCDPYVVFTC--NGKS----RTSSIKFQQCDPMWNEIFEYD----AMDEPPSMLDVEVYDFDGPF 611 (800)
Q Consensus 542 ~vi~a~~L~~~d~~g~sDPYv~v~~--~~~~----~~T~v~~~t~nP~WnE~f~f~----~~~~~~~~L~v~V~D~d~~~ 611 (800)
-.++|++|..+|..+++|||..+.- +... ++|.++++++||.|.+.. +. ...++...+.+.+||+|. .
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~-~ 218 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDS-N 218 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc-cchhhhcccCCCCceEEEEeccCC-C
Confidence 3466899999999999999999873 2222 899999999999997532 21 123446789999999998 7
Q ss_pred CCCceeEEEEEEceecCC
Q 003728 612 NEATSLGHAEINFVKSDI 629 (800)
Q Consensus 612 ~~dd~iG~~~i~l~~l~~ 629 (800)
+++++||++..++.++..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 888999999999988864
No 244
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.17 E-value=0.00045 Score=62.88 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=72.3
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEE----CCeeeEeeccCCCCCCeEeeEEEEEee--------
Q 003728 539 LTVALIKGDNLAAVDS-------------SGFCDPYVVFTC----NGKSRTSSIKFQQCDPMWNEIFEYDAM-------- 593 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~-------------~g~sDPYv~v~~----~~~~~~T~v~~~t~nP~WnE~f~f~~~-------- 593 (800)
|.|.|++|.+|++.-. .=.-++||.+.+ +++.++|+++-++..|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577788888764311 112479999994 244599999999999999999999764
Q ss_pred CC-------CCcEEEEEEEEccCC---------CCCCceeEEEEEEceecCCCCc-eeEEEEC
Q 003728 594 DE-------PPSMLDVEVYDFDGP---------FNEATSLGHAEINFVKSDISDL-ADVWIPL 639 (800)
Q Consensus 594 ~~-------~~~~L~v~V~D~d~~---------~~~dd~iG~~~i~l~~l~~~~~-~~~w~~L 639 (800)
.. ....+.++||..+.. -..|-+||.+.||+.++..... ...|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 10 134589999987641 1245589999999999765444 3789885
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.16 E-value=0.00051 Score=80.20 Aligned_cols=83 Identities=19% Similarity=0.420 Sum_probs=68.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcE-EEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPY-VRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPy-v~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~lG 80 (800)
..+++++|+ ++ ..||| +.+++|.+.++|.+.++|+||+||+...|.+.+. ....++.|||.+.++.++.+|
T Consensus 56 ~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~ 128 (644)
T PLN02964 56 ALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVG 128 (644)
T ss_pred EEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhh
Confidence 456777776 33 35885 5567799999999999999999999999999443 356799999999999999999
Q ss_pred eEEeeCcccccc
Q 003728 81 FLKIPVSRVFDA 92 (800)
Q Consensus 81 ~v~i~l~~l~~~ 92 (800)
.++++|.++...
T Consensus 129 ~~e~~~t~f~~k 140 (644)
T PLN02964 129 YCELDLFDFVTQ 140 (644)
T ss_pred heeecHhhccHH
Confidence 999999888653
No 246
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.00035 Score=74.24 Aligned_cols=105 Identities=26% Similarity=0.362 Sum_probs=85.8
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEE-ecCCCC
Q 003728 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~~-----~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~-D~d~~~ 74 (800)
+|.|.|++|++|..+... ..++|||+|++.. .+.+|+...++.+|.+-+...|.-.+....|.+.|| |...+.
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd 349 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMD 349 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccc
Confidence 578999999999765532 2699999999853 358899999999998889899988888899999999 566777
Q ss_pred CCceeEeEEeeCccccccCCCCCccEEEEcccCC
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~ 108 (800)
.+.|+|.+.+-+.++-.. ..+...||+|.+..
T Consensus 350 ~k~fmg~aqi~l~eL~ls--~~~~igwyKlfgss 381 (405)
T KOG2060|consen 350 HKSFMGVAQIMLDELNLS--SSPVIGWYKLFGSS 381 (405)
T ss_pred hHHHhhHHHHHhhhhccc--cccceeeeeccCCc
Confidence 889999999999888532 22567999998765
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.00055 Score=72.80 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=83.8
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEE-CCee----eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEE-ccC
Q 003728 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTC-NGKS----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYD-FDG 609 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~-~~~~----~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D-~d~ 609 (800)
|.|.|.|++|++|..+-. ...++|||.|++ ++.. .+|+...+|++|.+-+...|+- .++...|.+.||- +..
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdygR 347 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDYGR 347 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEeccccc
Confidence 569999999999988754 347899999995 3322 7899999999998888888753 3346689999994 555
Q ss_pred CCCCCceeEEEEEEceecCCCC-ceeEEEECCccC
Q 003728 610 PFNEATSLGHAEINFVKSDISD-LADVWIPLQGKL 643 (800)
Q Consensus 610 ~~~~dd~iG~~~i~l~~l~~~~-~~~~w~~L~~k~ 643 (800)
...+.|+|.+.|.+.++.... ....||+|.+..
T Consensus 348 -md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 348 -MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred -cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 677789999999999998777 668899998643
No 248
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.89 E-value=0.00097 Score=71.44 Aligned_cols=125 Identities=15% Similarity=0.201 Sum_probs=94.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeccCCCCCCeEeeEEEEEeeCCCC-----------cEE
Q 003728 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDEPP-----------SML 600 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~-----------~~L 600 (800)
..|.+.|+++.+++.....---|-||.+.+. .++.+|.+++.|..|.++|.|.+++...+. .-+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 4578888999888765433335678888752 234789999999999999999998865322 228
Q ss_pred EEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEecCCC
Q 003728 601 DVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (800)
Q Consensus 601 ~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~~~~~ 662 (800)
.|+||.+...+.+|.++|.+++.+..+...-.....++|.+. .+..+|+|.+++.+.+.-+
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-RK~vGGkLevKvRiR~Pi~ 507 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-RKAVGGKLEVKVRIRQPIG 507 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-ccccCCeeEEEEEEecccc
Confidence 999999987457789999999999888766656777888642 2345899999999875443
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.68 E-value=0.0015 Score=70.13 Aligned_cols=117 Identities=20% Similarity=0.348 Sum_probs=88.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---C---------CCEEEE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---L---------KDELVI 65 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkv~~~t~nP~WnE~f~f~v~~---~---------~~~L~i 65 (800)
|.+.|+++.+++........|-|+.+++- .++.+|.+++++.+|.|+|.|.+.+.. . ...+.|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 44567777777654433346778888872 467899999999999999999999943 1 357999
Q ss_pred EEEecCCC-CCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 66 SVLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 66 ~V~D~d~~-~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
+||+...| .+|.++|.+.+.|.-|. +.+.....|+|.+..+ .+.|.|.+.+..-
T Consensus 449 eifhkggf~rSdkl~gt~nikle~Le---n~cei~e~~~l~DGRK----~vGGkLevKvRiR 503 (523)
T KOG3837|consen 449 EIFHKGGFNRSDKLTGTGNIKLEILE---NMCEICEYLPLKDGRK----AVGGKLEVKVRIR 503 (523)
T ss_pred EEeeccccccccceeceeeeeehhhh---cccchhhceecccccc----ccCCeeEEEEEEe
Confidence 99998854 67999999999998873 3444556788876542 5789999988874
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.49 E-value=0.019 Score=54.90 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=88.7
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcE--EEEEECCeeeEeeccCCCCCCeEeeEEEEEeeCCC-------------CcE
Q 003728 537 WLLTVALIKGDNLAAVDS--SGFCDPY--VVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEP-------------PSM 599 (800)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~--~g~sDPY--v~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~-------------~~~ 599 (800)
.-|.|+|+.++-...--. .|..+.- +-+.+++|+++|+.+..+.+|.++|.|-|++..+. .+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 348899998885543211 1444444 44557899999999999999999999999986542 356
Q ss_pred EEEEEEEccCCCCCCceeEEEEEEceecCCCCce--eEEEECCccCcC--ccccceEEEEEEe
Q 003728 600 LDVEVYDFDGPFNEATSLGHAEINFVKSDISDLA--DVWIPLQGKLAQ--ACQSKLHLRIFLN 658 (800)
Q Consensus 600 L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~--~~w~~L~~k~~~--~~~G~l~l~~~~~ 658 (800)
+++.|.-.|. .+...++|.-.+++..+...+.. ..-+.|.+..+. ...|-|.|++++-
T Consensus 89 ihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 89 IHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred eEEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 8888888887 66668999999999988776665 444455554332 4689999999865
No 251
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.41 E-value=0.0029 Score=53.64 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=67.4
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEE--EEECCee-eEeeccCCCCCCeEeeEEEEEeeC--CCCcEEEEEEEEccCCCC
Q 003728 540 TVALIKGDNLAAVDSSGFCDP--YVV--FTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMD--EPPSMLDVEVYDFDGPFN 612 (800)
Q Consensus 540 ~V~vi~a~~L~~~d~~g~sDP--Yv~--v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~--~~~~~L~v~V~D~d~~~~ 612 (800)
-|+|+.|++|.-....| -+| |++ ++++... ++|++.....||++.|+|.|.+.- -....|.|.|+.. ..
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~---~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ---TP 77 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc---CC
Confidence 47899999997655433 334 443 3344333 899999999999999999997733 2345689999983 45
Q ss_pred CCceeEEEEEEceecCCCCceeEEEE
Q 003728 613 EATSLGHAEINFVKSDISDLADVWIP 638 (800)
Q Consensus 613 ~dd~iG~~~i~l~~l~~~~~~~~w~~ 638 (800)
+..-||.+.+.+..+.. +..+.|..
T Consensus 78 RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCCH-HHhhhhhc
Confidence 77799999999988654 33455654
No 252
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.24 E-value=0.0054 Score=52.04 Aligned_cols=85 Identities=16% Similarity=0.303 Sum_probs=63.1
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEEE--EEC-CeEEEeeeccCCCCCeeccEEEEEEe--C-CCCEEEEEEEecCCCCC
Q 003728 4 VVRVIEARNIPAMDQNGYSDP--YVRL--QLG-RQRFKTKVVRKSLSPSWEEEFSFKVE--D-LKDELVISVLDEDKYFN 75 (800)
Q Consensus 4 ~V~Vi~A~~L~~~d~~g~~DP--yv~v--~l~-~~~~kTkv~~~t~nP~WnE~f~f~v~--~-~~~~L~i~V~D~d~~~~ 75 (800)
-++|+.++||......| -+| |++= ++. ....||.+..+..||+|.|+|.|.+. . ..-.|.+.|+..- .+
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~--~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT--PR 78 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC--Cc
Confidence 37899999997655433 234 4442 333 34688999999999999999999983 2 2468999999943 46
Q ss_pred CceeEeEEeeCccccc
Q 003728 76 DDFVGFLKIPVSRVFD 91 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~ 91 (800)
.+.||.+.+.++++-.
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 7899999999988754
No 253
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.20 E-value=0.011 Score=68.91 Aligned_cols=111 Identities=23% Similarity=0.367 Sum_probs=81.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeeeccC-CCCCeeccE-EEEEE--eCCCCEEEEEEEec
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-------QRFKTKVVRK-SLSPSWEEE-FSFKV--EDLKDELVISVLDE 70 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-------~~~kTkv~~~-t~nP~WnE~-f~f~v--~~~~~~L~i~V~D~ 70 (800)
++.|+|+++.-|..++ ...||.|.+-+ ..++|+++.+ +.||+|+|+ |.|.- -+.-..|+|.||++
T Consensus 704 t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred eEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 6899999999997664 45899999832 4588888886 699999976 78863 33447899999997
Q ss_pred CCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 71 d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
.. .|||+-.+|+..+. .+.+.+.|......+ -..-.|.+.+.....
T Consensus 780 gg----K~ig~RIlpvd~l~------~GYrhv~LRse~Nqp--l~lp~Lfv~i~~kdy 825 (1189)
T KOG1265|consen 780 GG----KFIGQRILPVDGLN------AGYRHVCLRSESNQP--LTLPALFVYIVLKDY 825 (1189)
T ss_pred CC----ceeeeeccchhccc------CcceeEEecCCCCCc--cccceeEEEEEeecc
Confidence 64 69999999998874 256778887665432 223455555555443
No 254
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.89 E-value=0.039 Score=64.65 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=85.4
Q ss_pred HHHHHHhhhcCCCCCccccCCC---eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEee-ccCCCCCCe
Q 003728 515 SRFMQARKQKGSDHGVKAQGDG---WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-------SRTSS-IKFQQCDPM 583 (800)
Q Consensus 515 ~~~~~~~~~~~~d~~~~~~~~~---~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-------~~~T~-v~~~t~nP~ 583 (800)
..||+++.. ..|-......++ +.+.|+||+|.-|..++. .-||.|.+-|- .++|+ +..+++||+
T Consensus 679 PdfmRrpDr-~fdPFse~~VdgvIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npv 753 (1189)
T KOG1265|consen 679 PDFMRRPDR-QFDPFSESPVDGVIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPV 753 (1189)
T ss_pred hHHhhCCCc-CcCCcccCcccceEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcc
Confidence 456665552 223222222232 779999999999988763 38999986332 14444 456899999
Q ss_pred Eee-EEEEEe-eCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCccCcCc-cccceEEEEEE
Q 003728 584 WNE-IFEYDA-MDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (800)
Q Consensus 584 WnE-~f~f~~-~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~~~~ 657 (800)
|+| -|.|.- .-+.-..|+|.||+... .+||+-.+++..+..+.. .+.|....++. .-..|.+.+.+
T Consensus 754 y~eepfvF~KVvLpeLA~lRiavyeEgg-----K~ig~RIlpvd~l~~GYr---hv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 754 YEEEPFVFRKVVLPELASLRIAVYEEGG-----KFIGQRILPVDGLNAGYR---HVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred cccCCcccceecccchhheeeeeeccCC-----ceeeeeccchhcccCcce---eEEecCCCCCccccceeEEEEEe
Confidence 995 577753 33335679999999764 599999999999887654 46776554432 23455555554
No 255
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.85 E-value=0.12 Score=56.17 Aligned_cols=121 Identities=18% Similarity=0.370 Sum_probs=93.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC--------CCCEEEEEEEecC-CC
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--------LKDELVISVLDED-KY 73 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~--------~~~~L~i~V~D~d-~~ 73 (800)
+.|+|++|+|.+... ...-++...+++....|-.+..+..|.||.+..++++. ....|++++|..+ .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 34568888899999999999899999999999999842 2468999999987 44
Q ss_pred CCCceeEeEEeeCccc---cccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 74 FNDDFVGFLKIPVSRV---FDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 74 ~~d~~lG~v~i~l~~l---~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
...+.||.+.+||..+ .. ........||+|..-+.+- .+..-+|+|.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~-~~~~~~~~W~~LL~~~~~y-~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQE-KNQKQKPKWYKLLSSSSKY-KKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccc-cccccCCCeeEcccccccc-ccCCccEEEEEEEecc
Confidence 6678999999999998 32 2224678999999763221 1345688888888654
No 256
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.71 E-value=0.15 Score=48.81 Aligned_cols=125 Identities=23% Similarity=0.262 Sum_probs=85.6
Q ss_pred EEEEEEEeecCCCCCCC--CCCCc--EEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC--------------CCEEE
Q 003728 3 LVVRVIEARNIPAMDQN--GYSDP--YVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL--------------KDELV 64 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~--g~~DP--yv~v~l~~~~~kTkv~~~t~nP~WnE~f~f~v~~~--------------~~~L~ 64 (800)
|+++|..++-....-.. +..+. ++-+.+++++++|+.+..+.+|.++|.|.|++... ...|+
T Consensus 11 L~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pih 90 (156)
T PF15627_consen 11 LHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIH 90 (156)
T ss_pred EEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceE
Confidence 67778777644221110 23333 44455589999999999999999999999999321 35788
Q ss_pred EEEEecCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecC
Q 003728 65 ISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNT 129 (800)
Q Consensus 65 i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~~ 129 (800)
+.|.-.|..+...++|+-.++...++..+.+.. ..-..|....... +...|-|.+++.+.|..
T Consensus 91 ivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~-~~~vEL~G~~~e~-kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 91 IVLIRTDPSGETTLVGSHFLDWRKVLCSGNGST-SFTVELCGVGPES-KVPVGILDLRLELLPNL 153 (156)
T ss_pred EEEEEecCCCceEeeeeceehHHHHhccCCCcc-ceeEEEeccCCCC-ccceeEEEEEEEeecCC
Confidence 888888876667899999999999886544321 1223343333222 35789999999998753
No 257
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.55 E-value=0.17 Score=55.08 Aligned_cols=120 Identities=13% Similarity=0.237 Sum_probs=90.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEeeC-------CCCcEEEEEEEEccCCC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-------EPPSMLDVEVYDFDGPF 611 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~-------~~~~~L~v~V~D~d~~~ 611 (800)
+.|+|++|+|.+... .-.-.+..++++....|..+..+-.|.||..+.+++.. .....|++++|-.|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998862 33456667899999999999999999999999887632 23567999999998324
Q ss_pred CCCceeEEEEEEceec---CCC--CceeEEEECCccC--cCccccceEEEEEEecCC
Q 003728 612 NEATSLGHAEINFVKS---DIS--DLADVWIPLQGKL--AQACQSKLHLRIFLNNTK 661 (800)
Q Consensus 612 ~~dd~iG~~~i~l~~l---~~~--~~~~~w~~L~~k~--~~~~~G~l~l~~~~~~~~ 661 (800)
+..+.||.+.++|... ..+ .....||+|-+-. -....-+|.|.+.+....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 6778999999999887 444 3457899998642 222345666666665443
No 258
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.37 E-value=0.13 Score=49.88 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=59.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEccC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~ 609 (800)
++|+|++|+++.-.+ .+|-||.+. .|++. ..|+.+.. .+|.|||..+|++.- +....|.|+||+...
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 899999999998653 478888875 45554 34444443 689999999998732 335679999999764
Q ss_pred CCC----CCceeEEEEEEcee
Q 003728 610 PFN----EATSLGHAEINFVK 626 (800)
Q Consensus 610 ~~~----~dd~iG~~~i~l~~ 626 (800)
-. ....||.+.++|-+
T Consensus 86 -~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 86 -RKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred -ccCCCCceEEEEEEEEEEEC
Confidence 11 12468998888755
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.34 E-value=0.13 Score=50.87 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=59.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEccC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~ 609 (800)
++|+|+.+.+|... ...++-||.+. .|++. .+|+.+.-+.++.|||.++|++.- +....|.|.||+...
T Consensus 10 f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 10 FSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred EEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 89999999999862 23466677754 46665 466666556779999999997632 335679999999754
Q ss_pred CCC----------------CCceeEEEEEEcee
Q 003728 610 PFN----------------EATSLGHAEINFVK 626 (800)
Q Consensus 610 ~~~----------------~dd~iG~~~i~l~~ 626 (800)
.. .+..||.+.++|-+
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 88 -KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred -cccccccccccccccccCcceEEEEEeEEEEc
Confidence 11 13577777777654
No 260
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.21 E-value=0.29 Score=47.51 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=60.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEE--e--CCCCEEEEEEEecC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~----~kTkv~~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (800)
.++|+|+.|.+++..+ .+|-||.+++ |++. ..|+.+.. .++.|||-..|++ . +.+..|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 4789999999987643 4688998876 4432 34443433 6799999999988 3 33589999999965
Q ss_pred CCC----CCceeEeEEeeCccc
Q 003728 72 KYF----NDDFVGFLKIPVSRV 89 (800)
Q Consensus 72 ~~~----~d~~lG~v~i~l~~l 89 (800)
.-. ....||.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 311 235699999988764
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.85 E-value=0.13 Score=50.73 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=59.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EEEeeeccCCCCCeeccEEEEEE--e--CCCCEEEEEEEecC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQ----RFKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~----~~kTkv~~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (800)
+++|+|+.+.+|... ....+-||.+.+ |++ ...|+.+.-+.++.|||.+.|++ . +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 478999999999862 234666777765 443 24565555557799999999987 3 33579999999965
Q ss_pred CCC----------------CCceeEeEEeeCcc
Q 003728 72 KYF----------------NDDFVGFLKIPVSR 88 (800)
Q Consensus 72 ~~~----------------~d~~lG~v~i~l~~ 88 (800)
... ....||.+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 321 13577777777655
No 262
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.37 E-value=0.29 Score=47.42 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=60.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEccC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~ 609 (800)
++|++....++...+ ....+-||.+. .|++. ..|.......++.|||..+|++.- +....|.|.||+.+.
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 788888888887622 23466677664 45653 455554444789999999998622 335679999999876
Q ss_pred CCC--CCceeEEEEEEceec
Q 003728 610 PFN--EATSLGHAEINFVKS 627 (800)
Q Consensus 610 ~~~--~dd~iG~~~i~l~~l 627 (800)
.. .+..||.+.++|-+.
T Consensus 89 -~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 89 -PGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred -CCCCcceEEEEEeEEeEcc
Confidence 33 457999999988653
No 263
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.97 E-value=0.53 Score=45.76 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=51.6
Q ss_pred CCCCCcEEEEE--ECCee----eEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEccCCCCCCceeEEEEEEce
Q 003728 555 SGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDGPFNEATSLGHAEINFV 625 (800)
Q Consensus 555 ~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~ 625 (800)
...+|-||.+. .+++. ..|+.+.-+..+.|||...|++.- +....|.|+|||.+. .+....||.+.++|-
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lF 105 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeE
Confidence 34577787775 35544 466666666778999999998732 335679999999876 456678999999875
Q ss_pred e
Q 003728 626 K 626 (800)
Q Consensus 626 ~ 626 (800)
+
T Consensus 106 d 106 (159)
T cd08397 106 N 106 (159)
T ss_pred C
Confidence 5
No 264
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=93.64 E-value=0.23 Score=43.13 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=41.2
Q ss_pred ccc-cceeeecceeEEeccCCCceeEEEEEccccceEEEcCCccccCCCCeEEEEEec
Q 003728 717 LLQ-GRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQ 773 (800)
Q Consensus 717 ~~~-G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~k~~~~~~~~~~~~~~~~~~~ 773 (800)
..| |++|++...+||--+.......+.||+.+|..++...+++ ..+|-|++.+++
T Consensus 34 ~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~--~sSpKI~l~l~~ 89 (89)
T PF11605_consen 34 NFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL--KSSPKIILHLKP 89 (89)
T ss_dssp T-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT--SSS-EEEEEES-
T ss_pred cccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc--CCCCeEEEEecC
Confidence 444 9999999999997655444557999999999998888877 458899988864
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.63 E-value=0.35 Score=46.89 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=60.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EEEeeeccCCCCCeeccEEEEEE--e--CCCCEEEEEEEecC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQ----RFKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~----~~kTkv~~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (800)
.++|+|....++...+ ....+-||.+++ |++ ...|.......++.|||...|++ . +.+..|.|+||+..
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4678888888876521 234667777766 443 23444444346899999999987 2 34589999999977
Q ss_pred CCC--CCceeEeEEeeCccc
Q 003728 72 KYF--NDDFVGFLKIPVSRV 89 (800)
Q Consensus 72 ~~~--~d~~lG~v~i~l~~l 89 (800)
... .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 533 467999999998774
No 266
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.62 E-value=0.99 Score=44.48 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=62.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eEeeccC----CCCCCeEeeEEEEEeeC---CCCcEEEEEE
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKF----QQCDPMWNEIFEYDAMD---EPPSMLDVEV 604 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~----~t~nP~WnE~f~f~~~~---~~~~~L~v~V 604 (800)
.+.|+|..+.+++.......+|-||.+. .|++. ..|+... -...+.|||.++|++.- +....|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 4899999999999876555688888875 46665 3444221 12357899999998732 2356799999
Q ss_pred EEccCCCC---------CCceeEEEEEEcee
Q 003728 605 YDFDGPFN---------EATSLGHAEINFVK 626 (800)
Q Consensus 605 ~D~d~~~~---------~dd~iG~~~i~l~~ 626 (800)
|+... .. .+..||.+.++|-+
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 89 YGTTS-SPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEec-CCccccccccccceEEEEEeEeeEc
Confidence 99775 33 34689999988855
No 267
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.58 E-value=1.9 Score=40.91 Aligned_cols=119 Identities=21% Similarity=0.344 Sum_probs=77.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee----eEeeccCCCCCCeEeeEEEEEeeC---C-----CCcEEEEE
Q 003728 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---E-----PPSMLDVE 603 (800)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~----~~T~v~~~t~nP~WnE~f~f~~~~---~-----~~~~L~v~ 603 (800)
...+.|+|.+..+++. ...--||....++.. .+......+-.-.|||.|.+.+.- . ..-.+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3568899999999987 223345555555543 223333345557899999887632 1 12348888
Q ss_pred EEEccCCCCCCceeEEEEEEceecCCC--CceeEEEECCccCcCccccceEEEEEEecCC
Q 003728 604 VYDFDGPFNEATSLGHAEINFVKSDIS--DLADVWIPLQGKLAQACQSKLHLRIFLNNTK 661 (800)
Q Consensus 604 V~D~d~~~~~dd~iG~~~i~l~~l~~~--~~~~~w~~L~~k~~~~~~G~l~l~~~~~~~~ 661 (800)
|+..+. -++...+|.+.|+|++.... .....-++|... ......|+|.+.+...+
T Consensus 82 v~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 82 VFEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELR 138 (143)
T ss_pred EEEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECc
Confidence 888743 23336999999999998774 344667777654 23456788888766444
No 268
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.47 E-value=0.14 Score=53.39 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=77.7
Q ss_pred CCCeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCC
Q 003728 534 GDGWLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (800)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~--~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 610 (800)
+-.|+|.++++++++|.-... +-+-+-||++.++.+. .+|.+.....-=.|.|+|+.++.+. ..+.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~p- 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWPP- 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc--eeeeEEEeecCc-
Confidence 345889999999999976543 4457899999999876 6777777777778999999988763 478999999997
Q ss_pred CCCCceeEEEEEEceecCCCCceeEEEECCccCcCccccceEEEEEEe
Q 003728 611 FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 611 ~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
-.++.+.-..-+.+..+. .+..+.-+.|.- ...|.+.+++-+.
T Consensus 125 q~RHKLC~~g~l~~~~v~-rqspd~~~Al~l----ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 125 QRRHKLCHLGLLEAFVVD-RQSPDRVVALYL----EPRGQPPLRLPLA 167 (442)
T ss_pred hhhccccccchhhhhhhh-hcCCcceeeeec----ccCCCCceecccC
Confidence 455655433334333332 222233333321 1235566666544
No 269
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.36 E-value=3.2 Score=39.30 Aligned_cols=117 Identities=23% Similarity=0.312 Sum_probs=76.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---EEeeecc-CCCCCeeccEEEEEEe----CC-----CCEEEEEEE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR---FKTKVVR-KSLSPSWEEEFSFKVE----DL-----KDELVISVL 68 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~---~kTkv~~-~t~nP~WnE~f~f~v~----~~-----~~~L~i~V~ 68 (800)
++.|+|.+..++|. .....||.+..++.. ..|.... .+..-.|||+|.+.+. .. ...+.+.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 57789999999987 224456666666543 4444433 3556799999999871 11 257889998
Q ss_pred ecCCCCCCceeEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 69 DEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 69 D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
....-++...+|.+.|+|.++.... ......-++|.... .....|.+++.+...
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~-~~~~~~~~~l~~~~-----~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANED-EEPITVRLLLKKCK-----KSNATLSISISLSEL 137 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcC-CCcEEEEEeCccCC-----CCCcEEEEEEEEEEC
Confidence 8753233368999999999997532 12234456665441 446788888888654
No 270
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.32 E-value=1.6 Score=37.78 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCccE
Q 003728 22 SDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTA 100 (800)
Q Consensus 22 ~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~~ 100 (800)
.+-.+.+.+++. ..+|.-.. ..+..|++.|.|++ +.+.+|.|.||-.|- ..+-|..-+.|.+... ..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~L-dRsRELEI~VywrD~---RslCav~~lrLEd~~~-------~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLEL-ERSRELEIAVYWRDW---RSLCAVKFLKLEDERH-------EV 76 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEe-ecccEEEEEEEEecc---hhhhhheeeEhhhhcc-------cc
Confidence 677888999875 45555433 45788999999999 457899999998765 3455666666766321 22
Q ss_pred EEEcccCCCCCCCCcceEEEEEEEE
Q 003728 101 WHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 101 w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
-.+| .++|.+...++|
T Consensus 77 ~~~l---------epqg~l~~ev~f 92 (98)
T cd08687 77 QLDM---------EPQLCLVAELTF 92 (98)
T ss_pred eecc---------ccccEEEEEEEe
Confidence 2344 346888887777
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.11 E-value=0.52 Score=46.45 Aligned_cols=88 Identities=23% Similarity=0.351 Sum_probs=62.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeecc--C--CCCCeeccEEEEEE--e--CCCCEEEEEE
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVR--K--SLSPSWEEEFSFKV--E--DLKDELVISV 67 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~----~kTkv~~--~--t~nP~WnE~f~f~v--~--~~~~~L~i~V 67 (800)
.+.|+|.++.+++........|-|+.+++ |++. ..|+... + ...+.|||...|++ . +.+..|.|+|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999998775556788998876 4432 3444322 1 23577999999988 2 3457999999
Q ss_pred EecCCCC---------CCceeEeEEeeCccc
Q 003728 68 LDEDKYF---------NDDFVGFLKIPVSRV 89 (800)
Q Consensus 68 ~D~d~~~---------~d~~lG~v~i~l~~l 89 (800)
|+..... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976533 356888888887663
No 272
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.95 E-value=1.6 Score=37.69 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=59.2
Q ss_pred CCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeE
Q 003728 557 FCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADV 635 (800)
Q Consensus 557 ~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~ 635 (800)
-++-.+++.+++.. ..|..+. -.+..|++.|.|++.. ...|.|.||-+|- ..+.|-..+-|.+. .+..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~----RslCav~~lrLEd~----~~~~ 76 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW----RSLCAVKFLKLEDE----RHEV 76 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc----hhhhhheeeEhhhh----cccc
Confidence 37888999998866 6666553 3688999999998755 5689999998875 34677777777662 2344
Q ss_pred EEECCccCcCccccceEEEEEE
Q 003728 636 WIPLQGKLAQACQSKLHLRIFL 657 (800)
Q Consensus 636 w~~L~~k~~~~~~G~l~l~~~~ 657 (800)
-++|+ .+|.+..++.|
T Consensus 77 ~~~le------pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME------PQLCLVAELTF 92 (98)
T ss_pred eeccc------cccEEEEEEEe
Confidence 44554 35677777665
No 273
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.56 E-value=0.61 Score=45.33 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEE--e--CCCCEEEEEEEecCCCCCCceeEeEEeeCccc
Q 003728 20 GYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDEDKYFNDDFVGFLKIPVSRV 89 (800)
Q Consensus 20 g~~DPyv~v~l--~~~~----~kTkv~~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l 89 (800)
..+|-||.+++ +++. ..|+.+.-+..+.|||-..|++ . +.+..|.|+|||...-+....+|.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34788998877 4332 3555555466789999999998 3 34589999999987645677899999988663
No 274
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=91.50 E-value=14 Score=35.78 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=96.2
Q ss_pred eeEEecChhhhhccccCCCCcccHHHHHhcCCcceeeecccccCCCCceEEEEEEEeecC-------CCC-ceeEEeEEE
Q 003728 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN-------KLI-KATKGFEEQ 328 (800)
Q Consensus 257 d~~~~~~~~~~~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~sy~~~~~-------~~~-k~~~~~e~q 328 (800)
...|+.++++++.++.++ .|+....+..+..+.....-....++ ...++.-..+.. +.+ .....++++
T Consensus 4 ~~~~~~~~~~v~~~~~d~--~y~~~r~~~~g~~~~~~~~~~~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE--DYWEARCAALGADNAEVESFEVDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH--HHHHHHHHHcCCCCceEEEEEEcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 356899999999999964 68888888877755555554333333 222222222221 122 467788888
Q ss_pred EEEecCCceEEEEEEEeCCCCCCCCeEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeeeeeehhhhhccHHHHHHHHH
Q 003728 329 TYLKADGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (800)
Q Consensus 329 ~~~~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~~k~~Ie~~~~~g~~~~~ 408 (800)
+....++..+....++..+ |.+.++.-.+.+.+ +...|++.+...+.-.- .+|-++||+-+...+...+
T Consensus 80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~------~~~gt~~~~~g~v~v~V-PlvGgkiE~~v~~~~~~~~ 148 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRP------DGGGTRLTVEGEVKVKV-PLVGGKIEKAVAENLRKLL 148 (159)
T ss_pred EEecCCCCeEEEEEEEEec----CceEEEEEEEEEec------CCCCEEEEEEEEEEEEE-ccccHHHHHHHHHHHHHHH
Confidence 8855566777766666655 66677888888874 45678777777665432 5899999999998887776
Q ss_pred HHHHHHHh
Q 003728 409 EQFATFLS 416 (800)
Q Consensus 409 ~~~~~~l~ 416 (800)
..-.+...
T Consensus 149 ~~e~~~~~ 156 (159)
T PF10698_consen 149 EAEQEFTA 156 (159)
T ss_pred HHHHHHHH
Confidence 65554443
No 275
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.30 E-value=2.2 Score=42.20 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=44.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee---eEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEcc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS---RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFD 608 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~---~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d 608 (800)
++|+|..+.++ ..+.....--||.+. .|++. .+|+.+.-+.+|.|||.++|++.- +....|.|.||+..
T Consensus 12 friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 78888888743 322222223455543 34443 456666667789999999998732 34567999999964
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.94 E-value=1.5 Score=41.76 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=38.6
Q ss_pred EeeccCCC-CCCeEeeEEEEEeeC---CCCcEEEEEEEEccCCCCCC----ceeEEEEEEceec
Q 003728 572 TSSIKFQQ-CDPMWNEIFEYDAMD---EPPSMLDVEVYDFDGPFNEA----TSLGHAEINFVKS 627 (800)
Q Consensus 572 ~T~v~~~t-~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~~~~~d----d~iG~~~i~l~~l 627 (800)
.|....-+ .+|.|||.++|++.- +....|.|.||+.+. .... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECC
Confidence 45555555 799999999998632 345689999999887 3443 5899999887654
No 277
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.88 E-value=2.5 Score=41.86 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=44.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---EEeeeccCCCCCeeccEEEEEE--eC--CCCEEEEEEEecC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR---FKTKVVRKSLSPSWEEEFSFKV--ED--LKDELVISVLDED 71 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~---~kTkv~~~t~nP~WnE~f~f~v--~~--~~~~L~i~V~D~d 71 (800)
.++|+|..+. .+..+......-||.+.+ |+.. .+|....-+.++.|||-+.|++ .+ ....|.|.||+..
T Consensus 11 ~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 3678888886 343333322334666544 4332 3455555567899999999988 33 3589999999964
No 278
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.13 E-value=3.7 Score=39.01 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=40.3
Q ss_pred EEeeeccCC-CCCeeccEEEEEE--e--CCCCEEEEEEEecCCCCCC----ceeEeEEeeCccc
Q 003728 35 FKTKVVRKS-LSPSWEEEFSFKV--E--DLKDELVISVLDEDKYFND----DFVGFLKIPVSRV 89 (800)
Q Consensus 35 ~kTkv~~~t-~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d~~~~d----~~lG~v~i~l~~l 89 (800)
..|+...-+ .++.|||.+.|++ . +.+..|.|+||..+..... ..||.+.++|-+.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 356666555 7999999999998 2 3468999999998764444 6899999998774
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.42 E-value=4.4 Score=36.04 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=48.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEccC
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~ 609 (800)
+.+.+..+++.........+|-||.+. .|++. ..|+.+.-...+.|||..+|++.- +....|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 566777777776654333468888885 45554 456665556669999999997632 335679999998653
No 280
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=85.52 E-value=1.6 Score=45.93 Aligned_cols=110 Identities=19% Similarity=0.180 Sum_probs=70.2
Q ss_pred EEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCce-
Q 003728 3 LVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF- 78 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~--~g~~DPyv~v~l~~~-~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~- 78 (800)
|.++++.+|+|..... .-.-+-||++.++.+ +.+|.+-....--.|.|+|+.++.+ ...+.+-||.|+.-.++++
T Consensus 53 L~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC 131 (442)
T KOG1452|consen 53 LYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLC 131 (442)
T ss_pred EEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhcccc
Confidence 6789999999954433 345788999998764 4666665556666899999998843 4678888888886444443
Q ss_pred -eEeEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 79 -VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 79 -lG~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
.| .+.+..+.. ...+.-+.|+- ..+|++-+++.+.
T Consensus 132 ~~g--~l~~~~v~r----qspd~~~Al~l-------ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 132 HLG--LLEAFVVDR----QSPDRVVALYL-------EPRGQPPLRLPLA 167 (442)
T ss_pred ccc--hhhhhhhhh----cCCcceeeeec-------ccCCCCceecccC
Confidence 34 233333322 11233344432 3468888888763
No 281
>PF14470 bPH_3: Bacterial PH domain
Probab=83.45 E-value=5.6 Score=34.62 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=48.5
Q ss_pred CCccceeeecccceeeee-cccccceeeecceeEEeccC-CCceeEEEEEccccceEEEcCCcc
Q 003728 698 LPPEEFLINDFTCHLKRK-MLLQGRLFLSARIIGFHANL-FGHKTNFFFLWEDIEDIQVLPPSL 759 (800)
Q Consensus 698 lp~~E~l~~~~~c~l~~~-~~~~G~ly~s~~~~cf~s~~-~g~~~k~~~~~~di~~i~k~~~~~ 759 (800)
|.++|.+.....|.+... -...|-+.++.+.+-|.... ++..+...+||++|.+|+..++.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~ 64 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGIL 64 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcccc
Confidence 346788888888887743 23348899998888888765 667888999999999999998755
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=83.14 E-value=5.6 Score=35.35 Aligned_cols=69 Identities=28% Similarity=0.403 Sum_probs=45.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEE--e--CCCCEEEEEEEecC
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~----~kTkv~~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (800)
+.+.+..+.+.+.......++-||.+++ |++. ..|+.+.-...+.|||-..|++ . +.+..|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556677777655443333578899877 4432 3455444456689999999987 2 34579999999854
No 283
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.84 E-value=5.7 Score=39.53 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=33.4
Q ss_pred eEeeccCCCCCCeEeeEEEEEeeCCC--CcEEEEEEEEccCCCC-CC--ceeEEEEEEcee
Q 003728 571 RTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYDFDGPFN-EA--TSLGHAEINFVK 626 (800)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~d~~~~-~d--d~iG~~~i~l~~ 626 (800)
+.|.+..++.+|.|+|+|.+++..+. ...|.|++++... -. ++ ..+|.+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~-~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSC-KESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE----SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecc-ccccCccceeEEEEEEeee
Confidence 78899999999999999999886653 4569999998664 21 11 578888887765
No 284
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=81.33 E-value=37 Score=33.28 Aligned_cols=68 Identities=12% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCcEEEEEECCeE-EEeeeccCC--CCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEeEEeeCcccc
Q 003728 22 SDPYVRLQLGRQR-FKTKVVRKS--LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVF 90 (800)
Q Consensus 22 ~DPyv~v~l~~~~-~kTkv~~~t--~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~ 90 (800)
..-|+++.++++. .+|+...-+ ..-.+||.|.+.+....+.|.++||.... ..+..|+++.+|+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 5578999997754 556554432 23467999999998888999999999887 67899999999987654
No 285
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.12 E-value=13 Score=37.32 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=40.1
Q ss_pred eEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEccCCCCCC---ceeEEEEEEce
Q 003728 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEA---TSLGHAEINFV 625 (800)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~d---d~iG~~~i~l~ 625 (800)
++|.+...+.+|.|+|++.+.+..+ ....|.|+++....--.+| ..+|-+.++|-
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 8899999999999999999988654 4557889987754200122 46777777764
No 286
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=75.24 E-value=15 Score=36.76 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=38.2
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCC-C-CceeEeEEeeCc
Q 003728 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF-N-DDFVGFLKIPVS 87 (800)
Q Consensus 34 ~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~-~-d~~lG~v~i~l~ 87 (800)
..+|-|...+.+|.|+|++.+.++. ...-|.+++++...-. + ...+|-+-+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 5788899889999999999999943 2467888887744211 1 145666666653
No 287
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.94 E-value=0.99 Score=52.58 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCCcEEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCC-CCcee
Q 003728 557 FCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI-SDLAD 634 (800)
Q Consensus 557 ~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~-~~~~~ 634 (800)
.-|||+-|.+.-.. ..+.+...+..|.|+|+|..++.. ...+.|.|+.... ...+.+...+++..+++.. .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCC-cchhhHHHhHHHHHHHHHHHhhhhh
Confidence 46899998887555 466668899999999999998655 4578888888654 4555555555555555442 23347
Q ss_pred EEEECCccCcCccccceEEEEEEecCCC
Q 003728 635 VWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (800)
Q Consensus 635 ~w~~L~~k~~~~~~G~l~l~~~~~~~~~ 662 (800)
.|+.++. .|+++..+.+.++-.
T Consensus 104 ~w~~~~~------~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 104 LWVLIEE------LGTLLKPAALTGTLE 125 (694)
T ss_pred hcccccc------ccceeeeecccCcCC
Confidence 7998753 377888888776544
No 288
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=73.00 E-value=9.6 Score=38.03 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=38.7
Q ss_pred eEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEccCCCCC--CceeEEEEEEc
Q 003728 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNE--ATSLGHAEINF 624 (800)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~--dd~iG~~~i~l 624 (800)
++|.+...+.+|.|+|++.+.+..+ ....|.|+++.... -.+ ...+|-+.++|
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~-~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST-KDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee-ccCCCCCceEEEEEee
Confidence 7899999999999999999988655 35568888877443 111 14567666666
No 289
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=72.02 E-value=11 Score=37.52 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=32.1
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCC-C--CceeEeEEeeCcc
Q 003728 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF-N--DDFVGFLKIPVSR 88 (800)
Q Consensus 34 ~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~-~--d~~lG~v~i~l~~ 88 (800)
...|.+...+.+|.|+|+|.+.++. .+.-|.+++++...-. + ...+|.+-+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3677788888999999999999943 2467999999855321 1 1577887777765
No 290
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=71.69 E-value=14 Score=36.99 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=39.1
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCC-CC---CceeEeEEeeCc
Q 003728 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-FN---DDFVGFLKIPVS 87 (800)
Q Consensus 34 ~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~-~~---d~~lG~v~i~l~ 87 (800)
..+|-|...+.+|.|+|++.+.++. ...-|.+++++...- .+ ...+|-+-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 5788888889999999999999943 346899999875421 11 245776666664
No 291
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=69.25 E-value=7.4 Score=34.83 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=48.5
Q ss_pred eeecccceeee-ecccccceeeecceeEEecc---------------CCCceeEEEEEccccceEEEcCCccccCCCCeE
Q 003728 704 LINDFTCHLKR-KMLLQGRLFLSARIIGFHAN---------------LFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVI 767 (800)
Q Consensus 704 l~~~~~c~l~~-~~~~~G~ly~s~~~~cf~s~---------------~~g~~~k~~~~~~di~~i~k~~~~~~~~~~~~~ 767 (800)
+.-.+.|.+-. ...+.|.|.+...++.|..+ .........+|+.||..|.+-.-.+. .-||
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr---~~Al 78 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR---DTAL 78 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE---EEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc---ceEE
Confidence 34467899987 55567999999999999877 33345557899999999998865442 4488
Q ss_pred EEEEecCC
Q 003728 768 VMTLRQGR 775 (800)
Q Consensus 768 ~~~~~~~~ 775 (800)
-|+...|+
T Consensus 79 EiF~~dg~ 86 (106)
T PF14844_consen 79 EIFFSDGR 86 (106)
T ss_dssp EEEETTS-
T ss_pred EEEEcCCc
Confidence 88887765
No 292
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=69.12 E-value=4.6 Score=48.65 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=74.6
Q ss_pred CCCcEEEEEECCee-eEeeccCCC-CCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCcee
Q 003728 557 FCDPYVVFTCNGKS-RTSSIKFQQ-CDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLAD 634 (800)
Q Consensus 557 ~sDPYv~v~~~~~~-~~T~v~~~t-~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~ 634 (800)
++++|+.+.+.... .+|....+. .+|.|.+.|+.. .......+.+.|-+.+. .+....+|.+.+++..+..+....
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~-~~h~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIG-FAHKAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhcccc-ccccccEEEEeecCCcc-ccceeEEEEeccchhhhhcccccc
Confidence 47999999988766 667777676 899999999874 34446678999988887 665779999999999998887788
Q ss_pred EEEECCccCcCcc--ccceEEEEEEe
Q 003728 635 VWIPLQGKLAQAC--QSKLHLRIFLN 658 (800)
Q Consensus 635 ~w~~L~~k~~~~~--~G~l~l~~~~~ 658 (800)
.|+++-...+... ...+++++.+.
T Consensus 215 ~~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 215 GWFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred ceeeeeccCCccccCCcccceEEeeE
Confidence 9999865433322 33445545543
No 293
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=67.46 E-value=28 Score=34.17 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=48.7
Q ss_pred CCcEEEEEECCee-eEeecc--CCCCCCeEeeEEEEEeeCCCCcEEEEEEEEccCCCCCCceeEEEEEEceec
Q 003728 558 CDPYVVFTCNGKS-RTSSIK--FQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKS 627 (800)
Q Consensus 558 sDPYv~v~~~~~~-~~T~v~--~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l 627 (800)
..=|++|.++++. .+|+.. .....=.+||.|.+.+.. ....|.++||.... ..+.+|+.+.+++-..
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG--LSDRLLAEVFVPVPGS 106 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC--ccceEEEEEEeeCCCC
Confidence 3468889999887 333332 233334568999998866 57899999999875 5677999999998554
No 294
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=65.81 E-value=16 Score=36.24 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=37.9
Q ss_pred eEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEccCCCC-----CCceeEEEEEEcee
Q 003728 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFN-----EATSLGHAEINFVK 626 (800)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~-----~dd~iG~~~i~l~~ 626 (800)
++|.+..+ .+|.|+|+|.+.++.. +...|.|++++.+. -. ....+|.+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~-~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS-KKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEcccc-ccccCCCccceEEEEEEeccc
Confidence 55555555 9999999999988554 35679999998764 11 23467777766644
No 295
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=60.96 E-value=48 Score=32.77 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=34.4
Q ss_pred eeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCC-----CCCceeEeEEeeCcc
Q 003728 37 TKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-----FNDDFVGFLKIPVSR 88 (800)
Q Consensus 37 Tkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~-----~~d~~lG~v~i~l~~ 88 (800)
+.++..+.+|.|+|+|.+.++. ...-|.+++++...- .....+|-+-+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444899999999999932 356899999986631 224456666666543
No 296
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=57.41 E-value=1.2e+02 Score=32.75 Aligned_cols=111 Identities=14% Similarity=0.254 Sum_probs=73.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCC--eeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSP--SWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkv~~~t~nP--~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG 80 (800)
|.|.|.+-.++. -...-|+.+..|+...+|..+.-+..- .-.|.....+.....+|+|.||-... .+..-||
T Consensus 60 LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hIg 133 (508)
T PTZ00447 60 LLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHIG 133 (508)
T ss_pred EEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEEE
Confidence 445555544442 235679999999888888665443322 23344555556667899999998765 5577899
Q ss_pred eEEeeCccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003728 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (800)
Q Consensus 81 ~v~i~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~ 125 (800)
.+.+.+..=.- +...+...||.+...+ ...++|.|++.=
T Consensus 134 dI~InIn~dII-dk~FPKnkWy~c~kDG-----q~~cRIqLSFhK 172 (508)
T PTZ00447 134 QIKIDINASVI-SKSFPKNEWFVCFKDG-----QEICKVQMSFYK 172 (508)
T ss_pred EEEecccHHHH-hccCCccceEEEecCC-----ceeeeEEEEehh
Confidence 99998875332 2345678999996543 456888887753
No 297
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=56.80 E-value=61 Score=29.25 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=49.9
Q ss_pred EEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCC--------CCEEEEEEEecCCCCCCceeEeEEeeCccccccCCC
Q 003728 25 YVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDL--------KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (800)
Q Consensus 25 yv~v~l~~-~~~kTkv~~~t~nP~WnE~f~f~v~~~--------~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~ 95 (800)
||.+.+.. +.+.|.++. +.+|.+|-+-.|.|... ...+.|+++..-. .....+|.+.+++..++.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence 56666654 456666665 88999998888888322 4789999998663 3467899999999999853321
Q ss_pred CCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003728 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (800)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~ 126 (800)
....-..|....+ ..-|.|...+++.
T Consensus 80 -~i~~~~~l~g~~~----~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 -RIHGSATLVGVSG----EDFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS-----TSEEEEEEEEEE
T ss_pred -eEEEEEEEeccCC----CeEEEEEEEEEec
Confidence 1233445544432 3678888777763
No 298
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=55.59 E-value=29 Score=34.39 Aligned_cols=54 Identities=9% Similarity=0.188 Sum_probs=38.7
Q ss_pred eEeeccCCCCCCeEeeEEEEEeeCCC--CcEEEEEEEEccCCCCC------CceeEEEEEEce
Q 003728 571 RTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYDFDGPFNE------ATSLGHAEINFV 625 (800)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~d~~~~~------dd~iG~~~i~l~ 625 (800)
..|.|..++.+|.|+|++.+.++... ...|.|+.++.+. -.+ ...+|.+-++|-
T Consensus 56 ~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~-~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 56 AYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC-QKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred EEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec-cccccCCCccceEEEEEEeee
Confidence 78899999999999999999886553 4568899998654 111 234565555553
No 299
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=55.56 E-value=39 Score=30.48 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=48.3
Q ss_pred EEEEEECCee-eEeeccCCCCCCeEeeEEEEEeeCC-------CCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCc
Q 003728 561 YVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDE-------PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDL 632 (800)
Q Consensus 561 Yv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~-------~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~ 632 (800)
||.+.+-.-. ..|.++ .+.||.+|-+-.+.+..+ ....+.|+++..-. .....+|.+.|++..+.....
T Consensus 2 Fct~dFydfEtq~Tpvv-~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVV-RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---E-ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeecccce-eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCCC
Confidence 4444443333 566666 499999999988877544 23468999987654 346799999999998774443
Q ss_pred --eeEEEECCccCcCccccceEEEEEEe
Q 003728 633 --ADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 633 --~~~w~~L~~k~~~~~~G~l~l~~~~~ 658 (800)
...-..|.+..++ .-|.|...+.+.
T Consensus 79 ~~i~~~~~l~g~~~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE-DFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS--TSEEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC-eEEEEEEEEEec
Confidence 3445566555444 567776666543
No 300
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=52.07 E-value=88 Score=34.86 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=64.9
Q ss_pred CCcEEEEEECCeEEEeeeccC----CCCC-e-eccEEEEEEe--------CC------CCEEEEEEEecCC-----C-CC
Q 003728 22 SDPYVRLQLGRQRFKTKVVRK----SLSP-S-WEEEFSFKVE--------DL------KDELVISVLDEDK-----Y-FN 75 (800)
Q Consensus 22 ~DPyv~v~l~~~~~kTkv~~~----t~nP-~-WnE~f~f~v~--------~~------~~~L~i~V~D~d~-----~-~~ 75 (800)
+.+||+|++.+...+|..+.- +.+| . -+-.-.|.++ .. ...|+|.||.-.. + ..
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 567999999876555544432 1111 1 1122344442 11 1579999998443 2 35
Q ss_pred CceeEeEEeeCccccccCCCC--CccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 76 DDFVGFLKIPVSRVFDADNKS--LPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~~--~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
..+||.+.|||. +...+.+. ....|..+.............+|||.+...+.
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 679999999997 33223222 35689999876544333467899999987653
No 301
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=51.82 E-value=17 Score=37.04 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=34.4
Q ss_pred eeEEEEEccccceEEEcCCccccCCCCeEEEEEecCCccccC
Q 003728 739 KTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGMDAR 780 (800)
Q Consensus 739 ~~k~~~~~~di~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (800)
.-.|.+|+.||..|++.++.+ |.+-|++++|.|-.+-|=
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~---G~~~lv~~~kdG~~~p~L 149 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSL---GWWYLVFILKDGTSLPPL 149 (213)
T ss_pred ceEEEEEhhheeeEEecCCCC---CceEEEEEecCCCccCce
Confidence 458999999999999999866 888999999999988773
No 302
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=49.45 E-value=50 Score=28.00 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=39.4
Q ss_pred cceeeecce--eEEeccCCCceeEEEEEccccceEEEcCCccccCCCCeEEEEEecCC
Q 003728 720 GRLFLSARI--IGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGR 775 (800)
Q Consensus 720 G~ly~s~~~--~cf~s~~~g~~~k~~~~~~di~~i~k~~~~~~~~~~~~~~~~~~~~~ 775 (800)
|.||++..+ +-|-.+-.+....+.||+.+|...+..+..-. --.|=|+++.+.
T Consensus 14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~---Kv~Lki~~~~~~ 68 (79)
T PF08567_consen 14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSP---KVMLKIVLKDDS 68 (79)
T ss_dssp EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSS---TEEEEEEETTSC
T ss_pred cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCc---ceEEEEEEecCC
Confidence 999999999 99988755544489999999999998876432 226777777664
No 303
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=46.44 E-value=29 Score=42.14 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCcEEEEEECCe-EEEeeeccCC-CCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCcc
Q 003728 22 SDPYVRLQLGRQ-RFKTKVVRKS-LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (800)
Q Consensus 22 ~DPyv~v~l~~~-~~kTkv~~~t-~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~ 99 (800)
.++|+.+.+... -.+|....+. .+|.|.+.|..........+.+.|-+.+..+....+|.+.+++..+... ....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~---~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG---HRIG 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc---cccc
Confidence 489999988654 3667777665 8999999998888777889999998888766678999999999988753 3467
Q ss_pred EEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003728 100 AWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 100 ~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
+|+++....++.. ...-.+.+++.|.+.
T Consensus 215 ~~~~Il~~d~~~~-~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 215 GWFPILDNDGKPH-QKGSNESLRLGFTPM 242 (887)
T ss_pred ceeeeeccCCccc-cCCcccceEEeeEee
Confidence 8999886654321 122344455555544
No 304
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.37 E-value=55 Score=32.66 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=31.9
Q ss_pred eeEeeccCCCCCCeEeeEEEEEeeCC--CCcEEEEEEEEcc
Q 003728 570 SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (800)
Q Consensus 570 ~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 608 (800)
...|.|..++.+|.|+|++.+.+... ....|.|+.++.+
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 37888999999999999999987554 3456899999865
No 305
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=45.81 E-value=61 Score=32.13 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.1
Q ss_pred eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecC
Q 003728 33 QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (800)
Q Consensus 33 ~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d 71 (800)
....|.|...+.+|.|+|++.+.++- ...-|.+++++..
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 35778888889999999999999942 2467889998844
No 306
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=45.79 E-value=68 Score=32.00 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=31.4
Q ss_pred eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecC
Q 003728 33 QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (800)
Q Consensus 33 ~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d 71 (800)
....|.|...+.+|.|.|++.+.++- ...-|.++.|+..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 35778888889999999999999942 3467889999865
No 307
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=43.81 E-value=3.5e+02 Score=27.16 Aligned_cols=92 Identities=8% Similarity=0.092 Sum_probs=51.8
Q ss_pred CCCceeEEeEEEEEEecCCceEEEEEE-EeCCCCCC-CCeEEEE---EEEEEecCCCCCCCCCceEEEEEEEEEEeeee-
Q 003728 317 KLIKATKGFEEQTYLKADGKVFAILAS-VSTPEVMY-GGSFKTE---LLFCITPGPELSSGEQSSHLVISWRMNFLQST- 390 (800)
Q Consensus 317 ~~~k~~~~~e~q~~~~~~~~~~~v~~~-~~tpdVP~-g~~F~v~---~~y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~- 390 (800)
.+++.-...-.++..+.+ +.|+|... +.-|.+|- .++-+++ ..|.|++- ..+++.|++.....+...++.
T Consensus 107 ~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~---~~~~~~t~v~~~~~~Dp~G~iP 182 (208)
T cd08868 107 GLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL---PNNPNKCNFTWLLNTDLKGWLP 182 (208)
T ss_pred CcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEEC---CCCCCceEEEEEEEECCCCCCc
Confidence 345555554444444444 55555443 33466663 4555555 55778852 235578888888888888773
Q ss_pred -eehhhhhccHHHHHHHHHHHHHHHH
Q 003728 391 -MMKGMIENGARSALRETYEQFATFL 415 (800)
Q Consensus 391 -~~k~~Ie~~~~~g~~~~~~~~~~~l 415 (800)
|+ +.+.+..++-+.+..+.+.+
T Consensus 183 ~~l---vN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 183 QYL---VDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred cee---eehhhHHHHHHHHHHHHHHH
Confidence 44 44444445545555554444
No 308
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=43.13 E-value=5.3 Score=45.99 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=41.4
Q ss_pred CCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEee-CCCCcEEEEEEEEccCCCCCCc
Q 003728 557 FCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAM-DEPPSMLDVEVYDFDGPFNEAT 615 (800)
Q Consensus 557 ~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~~-~~~~~~L~v~V~D~d~~~~~dd 615 (800)
+.+|+++..++.+.++|+....+.+|+|||. +++.. .+....|...|.+++. ++-+|
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~-~~lnd 361 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE-LDLND 361 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc-ccccc
Confidence 5789999999999999999999999999997 55442 2223345556666655 44444
No 309
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.33 E-value=9 Score=44.98 Aligned_cols=95 Identities=15% Similarity=0.095 Sum_probs=61.3
Q ss_pred CCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEeEEeeCccccccCCCCCcc
Q 003728 21 YSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (800)
Q Consensus 21 ~~DPyv~v~l~~~~-~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~lG~v~i~l~~l~~~~~~~~~~ 99 (800)
..+||+.|.+.-.. ..+.+.+.+..|.|+++|...+. ....+.|.|+.......+.+..++.+-.+++.. ......
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~--~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKL--LALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHH--Hhhhhh
Confidence 46899999886433 34445667899999999999973 467788888887654444444444444444432 111345
Q ss_pred EEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003728 100 AWHSLQPKNKKSKNKDCGEILLTISFSH 127 (800)
Q Consensus 100 ~w~~L~~~~~~~~~~~~G~I~L~l~~~~ 127 (800)
.|..+.+ .|.+...+.+..
T Consensus 104 ~w~~~~~---------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 104 LWVLIEE---------LGTLLKPAALTG 122 (694)
T ss_pred hcccccc---------ccceeeeecccC
Confidence 7877643 477777777654
No 310
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=38.63 E-value=4.3e+02 Score=26.68 Aligned_cols=149 Identities=8% Similarity=0.030 Sum_probs=74.5
Q ss_pred eeEEecChhhhhccccCCCCcccHHHHHhcCCcceeeecccccCCCCceEEEEEEEeecCC---CCceeEEeEEEEEEec
Q 003728 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANK---LIKATKGFEEQTYLKA 333 (800)
Q Consensus 257 d~~~~~~~~~~~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~sy~~~~~~---~~k~~~~~e~q~~~~~ 333 (800)
.-..++++++++++|+..+..+.......-.... .-..-++ .+ .+.|.+++-. .+..-...-.+...+.
T Consensus 51 e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~-----vle~id~--~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~ 122 (208)
T cd08903 51 EGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFE-----VVEAISD--DV-SVCRTVTPSAAMKIISPRDFVDVVLVKRY 122 (208)
T ss_pred EEEecCCHHHHHHHHHhccchhhhhhhhccccEE-----EEEEecC--CE-EEEEEecchhcCCCcCCCceEEEEEEEec
Confidence 3457899999999998543333222211111111 1000011 11 2345444432 2444444433344444
Q ss_pred CCceEEEEEEEe-CCCC-CCCCeEEEEEE-EEEecCCCCCCCCCceEEEEEEEEEEeeeeeehhhhhccHHHHHHHHHHH
Q 003728 334 DGKVFAILASVS-TPEV-MYGGSFKTELL-FCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQ 410 (800)
Q Consensus 334 ~~~~~~v~~~~~-tpdV-P~g~~F~v~~~-y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~~k~~Ie~~~~~g~~~~~~~ 410 (800)
+++.+++..... -|.. |-.++.+++.. +...+- .++.+++.|++.....+.+.++ +=+.+|.+...+.+.+++..
T Consensus 123 ~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~-~~~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~~~ 200 (208)
T cd08903 123 EDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCE-PVPGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAEFYNN 200 (208)
T ss_pred CCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEE-ECCCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHHHHHH
Confidence 444444443233 3344 35688888666 333331 1244678898888888877554 23455555556666666665
Q ss_pred HHHHH
Q 003728 411 FATFL 415 (800)
Q Consensus 411 ~~~~l 415 (800)
+...+
T Consensus 201 Lr~~~ 205 (208)
T cd08903 201 LTKAV 205 (208)
T ss_pred HHHHH
Confidence 55554
No 311
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=37.31 E-value=3.5e+02 Score=26.32 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=52.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----------Ce-EEEeeeccC-----CCCCeeccEEEEEEe--CC--CCE
Q 003728 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----------RQ-RFKTKVVRK-----SLSPSWEEEFSFKVE--DL--KDE 62 (800)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~----------~~-~~kTkv~~~-----t~nP~WnE~f~f~v~--~~--~~~ 62 (800)
+.=.|..|.+... .+-||+..+. .. ...|.+... +..-.||.-|.+.+. .. =..
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 4457888886542 4568888772 23 455555443 334579988888772 22 279
Q ss_pred EEEEEEecCCCCCCceeEeEEeeC
Q 003728 63 LVISVLDEDKYFNDDFVGFLKIPV 86 (800)
Q Consensus 63 L~i~V~D~d~~~~d~~lG~v~i~l 86 (800)
|.++||..|.++++...|-..+.|
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999988887655443
No 312
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=35.64 E-value=2.7e+02 Score=30.31 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=71.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeccCCCCCCeEeeEEEEEe-eCCCCcEEEEEEEEccCCCCCCce
Q 003728 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDA-MDEPPSMLDVEVYDFDGPFNEATS 616 (800)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~~-~~~~~~~L~v~V~D~d~~~~~dd~ 616 (800)
-|-|.|.+-.++.. ...-|+.+..|....+|..+.-+..-+-+=.-.+.+ .......|++.||-... .+..-
T Consensus 59 ~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL--vkk~h 131 (508)
T PTZ00447 59 YLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL--TKKVH 131 (508)
T ss_pred eEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc--cceeE
Confidence 36677766666543 356799999998888886665444444442222222 23345679999998764 56778
Q ss_pred eEEEEEEcee--cCCCCceeEEEECCccCcCccccceEEEEE
Q 003728 617 LGHAEINFVK--SDISDLADVWIPLQGKLAQACQSKLHLRIF 656 (800)
Q Consensus 617 iG~~~i~l~~--l~~~~~~~~w~~L~~k~~~~~~G~l~l~~~ 656 (800)
||.+.+.+.. +...-..+.||-+... | ...+++.|++.
T Consensus 132 IgdI~InIn~dIIdk~FPKnkWy~c~kD-G-q~~cRIqLSFh 171 (508)
T PTZ00447 132 IGQIKIDINASVISKSFPKNEWFVCFKD-G-QEICKVQMSFY 171 (508)
T ss_pred EEEEEecccHHHHhccCCccceEEEecC-C-ceeeeEEEEeh
Confidence 9999999865 3344556899999532 2 24567777765
No 313
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.63 E-value=71 Score=37.07 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=66.4
Q ss_pred cccccC-CCccceeeecccceeeeecccccceeeecceeEEeccCCCceeEEEEEccccceEEEcCCccccCCCCeEEEE
Q 003728 692 FQKLFG-LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMT 770 (800)
Q Consensus 692 f~~~F~-lp~~E~l~~~~~c~l~~~~~~~G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~k~~~~~~~~~~~~~~~~ 770 (800)
+...|. |+.+..+...|-|-+.. +..|.|+++.-.+-|.+..-+..--+.+|+.=|+.++|..++.+.-.+.+|.|+
T Consensus 30 ~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~ 107 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEIT 107 (717)
T ss_pred ccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEE
Confidence 455665 66677777779999888 788999999999999988777655677999999999999887764436688888
Q ss_pred EecCCcc
Q 003728 771 LRQGRGM 777 (800)
Q Consensus 771 ~~~~~~~ 777 (800)
-+.-|-+
T Consensus 108 CKDmr~l 114 (717)
T KOG4471|consen 108 CKDMRNL 114 (717)
T ss_pred eccccce
Confidence 7766653
No 314
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=32.77 E-value=4e+02 Score=24.56 Aligned_cols=88 Identities=13% Similarity=0.237 Sum_probs=53.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE-EeeeccCCCCCeeccEEEEEEe---CCCCEEEEEEEecCC-CCCC
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRF-KTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDK-YFND 76 (800)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~-kTkv~~~t~nP~WnE~f~f~v~---~~~~~L~i~V~D~d~-~~~d 76 (800)
.|.++=+.-.++|..+..+.+.||+.+.-+.... .+........-.=...+.+.+. .....+.|.+|+... ...+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 3555556667788776677899999999887765 3332221111111233444442 236889999999773 3456
Q ss_pred ceeEeEEeeCccc
Q 003728 77 DFVGFLKIPVSRV 89 (800)
Q Consensus 77 ~~lG~v~i~l~~l 89 (800)
+.+.++.+.-.-+
T Consensus 85 ~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 85 EKMFRFWFNTGFI 97 (134)
T ss_dssp EEEEEEEEEGGGS
T ss_pred CeEEEEEEeeeee
Confidence 6777777665554
No 315
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=32.15 E-value=1.6e+02 Score=24.81 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=28.5
Q ss_pred CCCCcEEEEEEEEccCCCCCCceeEEEEEEceecCCCCceeEEEECCcc
Q 003728 594 DEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (800)
Q Consensus 594 ~~~~~~L~v~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~k 642 (800)
..+.....|++||.|. +..|++|+.+..+ .+..|.|.+.
T Consensus 8 ~~P~~~~~V~L~e~d~-~~~Ddll~~~~Td---------~~G~F~l~G~ 46 (80)
T PF01060_consen 8 GKPAKNVKVKLWEDDY-FDPDDLLDETKTD---------SDGNFELSGS 46 (80)
T ss_pred CccCCCCEEEEEECCC-CCCCceeEEEEEC---------CCceEEEEEE
Confidence 3445567899999998 8899999987662 2445777654
No 316
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=31.89 E-value=1.5e+02 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=29.0
Q ss_pred cceeeecceeEEeccCCCceeEEEEEccccceEE
Q 003728 720 GRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQ 753 (800)
Q Consensus 720 G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~ 753 (800)
|.++++...++|||..- ...-+.|||..|..+.
T Consensus 21 G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~ 53 (55)
T smart00683 21 GVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVR 53 (55)
T ss_pred eEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEE
Confidence 99999999999999885 3778899999998775
No 317
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=30.78 E-value=3.4e+02 Score=27.13 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=44.2
Q ss_pred EEeecCCCCceeEEeEEEE-EEecCCceEEEEEEEeCC--CCCCCCeEEEE---EEEEEecCCCCCCCCCceEEEEEEEE
Q 003728 311 YIKAANKLIKATKGFEEQT-YLKADGKVFAILASVSTP--EVMYGGSFKTE---LLFCITPGPELSSGEQSSHLVISWRM 384 (800)
Q Consensus 311 y~~~~~~~~k~~~~~e~q~-~~~~~~~~~~v~~~~~tp--dVP~g~~F~v~---~~y~i~~g~~~~~~~~~~~l~i~~~i 384 (800)
|..+...+++.-....... ....++..|++......| .+|= ++.+++ ..|.|+| .+++.|++.--..+
T Consensus 92 ~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p-----~~~~~t~vty~~~~ 165 (197)
T cd08869 92 YVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEP-----CGSGKSRVTHICRV 165 (197)
T ss_pred EEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEE-----CCCCCeEEEEEEEE
Confidence 4444444454444443322 222334456655544433 4555 555444 5688884 56788999888888
Q ss_pred EEeeee--eehh
Q 003728 385 NFLQST--MMKG 394 (800)
Q Consensus 385 ~~~~s~--~~k~ 394 (800)
...++. |+-.
T Consensus 166 Dp~G~iP~wl~N 177 (197)
T cd08869 166 DLRGRSPEWYNK 177 (197)
T ss_pred CCCCCCCceeec
Confidence 888874 5533
No 318
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=30.60 E-value=5.7e+02 Score=25.71 Aligned_cols=147 Identities=12% Similarity=0.193 Sum_probs=79.9
Q ss_pred EE-ecChhhhhccccCCCCcccHHHHHh-cCCcceeeecccccCCCCceEEEEEEEeecCCCCceeEEeEEEEEEecCCc
Q 003728 259 MY-VIAPQDLNTLLFSPDSNFPRTWAEE-QGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKADGK 336 (800)
Q Consensus 259 ~~-~~~~~~~~~llf~~~s~f~~~~~~~-~~~~~~~~~~w~~~~~~~~~~R~~sy~~~~~~~~k~~~~~e~q~~~~~~~~ 336 (800)
.+ .++++.+++++.. ..+....... .+...++. ..+.+ .+.+-|....-.+++.-...-.......+++
T Consensus 57 ~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~le~----~~~~~---~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 57 VFEDCTPELLRDFYWD--DEYRKKWDETVIEHETLEE----DEKSG---TEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred EEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEEEe----cCCCC---cEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 45 5799999999975 4444443332 22222211 01101 2322233333334554444433333333245
Q ss_pred eEEEEEEE-eCCCCCCCCeEEEE---EEEEEecCCCCCCCCCceEEEEEEEEEEeeeeeehhhhhccHHHHHHHHHHHHH
Q 003728 337 VFAILASV-STPEVMYGGSFKTE---LLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQFA 412 (800)
Q Consensus 337 ~~~v~~~~-~tpdVP~g~~F~v~---~~y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~~k~~Ie~~~~~g~~~~~~~~~ 412 (800)
.+++.... .-|.+|-.+.-+|+ -.|.|++- ..+++.|++.+.+..+- +..+=+.++...+..|.-+.++.+.
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~---~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~ 203 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAV---KGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLE 203 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEe---cCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHH
Confidence 55554444 44678865555554 45677741 12667888888888875 3335566677777777778888888
Q ss_pred HHHhcc
Q 003728 413 TFLSQT 418 (800)
Q Consensus 413 ~~l~~~ 418 (800)
+++++|
T Consensus 204 ~a~~~Y 209 (209)
T cd08870 204 NALRKY 209 (209)
T ss_pred HHHhcC
Confidence 777654
No 319
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=29.70 E-value=6.1e+02 Score=25.72 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=48.2
Q ss_pred CceeEEeEEEEEEecCCceEE-EEEEEeCCCCCC-CCeEEEEE---EEEEecCCCCCCCCCceEEEEEEEEEEeeeeeeh
Q 003728 319 IKATKGFEEQTYLKADGKVFA-ILASVSTPEVMY-GGSFKTEL---LFCITPGPELSSGEQSSHLVISWRMNFLQSTMMK 393 (800)
Q Consensus 319 ~k~~~~~e~q~~~~~~~~~~~-v~~~~~tpdVP~-g~~F~v~~---~y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~~k 393 (800)
+..-...........+ +.++ +..++..|++|- .++-++++ .|.|.+ .+++.|++.....+...++. =+
T Consensus 106 vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p-----~~~~~t~vt~~~~~Dp~G~I-P~ 178 (222)
T cd08871 106 LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRP-----TGPKGCTLTYVTQNDPKGSL-PK 178 (222)
T ss_pred CCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEE-----CCCCCEEEEEEEecCCCCCc-CH
Confidence 4433333333333333 5544 445555677874 44455544 467774 55778988888888887763 11
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhcc
Q 003728 394 GMIENGARSALRETYEQFATFLSQT 418 (800)
Q Consensus 394 ~~Ie~~~~~g~~~~~~~~~~~l~~~ 418 (800)
.++...+....-..+..+.+.+.++
T Consensus 179 ~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 179 WVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1222222222334445555555554
No 320
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=29.41 E-value=1.2e+02 Score=33.09 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=59.6
Q ss_pred cccCCCccceeeecccceeee---ecccccceeeecceeEEeccCCCceeEEEEEccccceEEEcCCccccCCCCeEEEE
Q 003728 694 KLFGLPPEEFLINDFTCHLKR---KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMT 770 (800)
Q Consensus 694 ~~F~lp~~E~l~~~~~c~l~~---~~~~~G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~k~~~~~~~~~~~~~~~~ 770 (800)
+...|-+.|.+.+.+.-.|.- +-.+ |.++++...+.||++..- .--+.||+-.|..|+...+ .+| +++||-
T Consensus 147 ~~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne-~fNVSiPylqi~~i~ir~S---KfG-~aLVie 220 (339)
T PF07289_consen 147 GQLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNE-SFNVSIPYLQIKSIRIRDS---KFG-PALVIE 220 (339)
T ss_pred CeEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCc-cccccchHhhheeeeeecc---ccc-eEEEEE
Confidence 334566788888889988866 2222 889999999999998744 4557899999999998874 455 899998
Q ss_pred EecCCc
Q 003728 771 LRQGRG 776 (800)
Q Consensus 771 ~~~~~~ 776 (800)
.....|
T Consensus 221 T~~~sG 226 (339)
T PF07289_consen 221 TSESSG 226 (339)
T ss_pred EeccCC
Confidence 887776
No 321
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=28.01 E-value=1.9e+02 Score=35.39 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=44.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----CCee----eEeeccCCCCCCeEeeEEEEEeeC---CCCcEEEEEEEEc
Q 003728 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC----NGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDF 607 (800)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~----~~~~----~~T~v~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~ 607 (800)
++|+++.+.++.. .-..|-+|.|.. |++. +.|+-+..+.+|.||+..+|++.- +....|.+.||--
T Consensus 345 frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 345 FRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred eEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 7888888776532 335677777764 4544 455556668899999999998732 2345677877753
No 322
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=26.64 E-value=6.3e+02 Score=24.89 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=57.3
Q ss_pred CCceeEEeEEEEEEecCCc-eEEEEEEEeCCCCC--CCCeEEEEEE---EEEecCCCCCCCCCceEEEEEEEEEEeeeee
Q 003728 318 LIKATKGFEEQTYLKADGK-VFAILASVSTPEVM--YGGSFKTELL---FCITPGPELSSGEQSSHLVISWRMNFLQSTM 391 (800)
Q Consensus 318 ~~k~~~~~e~q~~~~~~~~-~~~v~~~~~tpdVP--~g~~F~v~~~---y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~ 391 (800)
+++.-...--....+..++ .+++..++..|..| ..+.-++++. |+|++ .+++.|++.....++..++.
T Consensus 103 p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~-----~~~~~~~vt~~~~~D~~G~i- 176 (206)
T PF01852_consen 103 PVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRP-----LGDGRTRVTYVSQVDPKGWI- 176 (206)
T ss_dssp TSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEE-----ETTCEEEEEEEEEEESSSSS-
T ss_pred CCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEE-----ccCCCceEEEEEEECCCCCC-
Confidence 3454333333333332344 45555677778776 4777777765 67884 66677988888888887764
Q ss_pred ehhhhhccHHHHHHHHHHHHHHHHhccc
Q 003728 392 MKGMIENGARSALRETYEQFATFLSQTI 419 (800)
Q Consensus 392 ~k~~Ie~~~~~g~~~~~~~~~~~l~~~~ 419 (800)
-+.++..-+.+++-+.++.+.+.|+++-
T Consensus 177 P~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 177 PSWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 1333333444555566677777776653
No 323
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=25.02 E-value=69 Score=29.25 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=32.8
Q ss_pred ecccccceeeecceeEEeccCCCceeEEEEEccccceEEEcC
Q 003728 715 KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLP 756 (800)
Q Consensus 715 ~~~~~G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~k~~ 756 (800)
-+.-+|++.+..+=+=||.+.. .+.-+.|||.+|..|...-
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n-~~dyIQIPW~eI~~V~a~V 60 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRN-VEDYIQIPWEEIDYVIASV 60 (118)
T ss_pred cccccCeEEEcccceEeecCCC-hhhcEEeChhheeEEEEEE
Confidence 3557799999999988976653 3678899999998887763
No 324
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=25.01 E-value=7.3e+02 Score=25.10 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=73.9
Q ss_pred eeeEEecChhhhhccccCCCCcccHHHHHhcCCcceeeecccc-cCCCCceEEEEEEEeecCC---CCceeEEeEEEEEE
Q 003728 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRF-ENGCESLKRDVTYIKAANK---LIKATKGFEEQTYL 331 (800)
Q Consensus 256 ~d~~~~~~~~~~~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~-~~~~~~~~R~~sy~~~~~~---~~k~~~~~e~q~~~ 331 (800)
..-+++.+++++|++++.+. ...+.-. .+....+-. -.++. .++|.+.... .+..-...--+...
T Consensus 50 ~egvi~~~~e~v~~~l~~~e--~r~~Wd~-----~~~~~~iie~Id~~T----~I~~~~~~~~~~~~vspRDfV~vr~~~ 118 (204)
T cd08904 50 VEGIIPESPAKLIQFMYQPE--HRIKWDK-----SLQVYKMLQRIDSDT----FICHTITQSFAMGSISPRDFVDLVHIK 118 (204)
T ss_pred EEEEecCCHHHHHHHHhccc--hhhhhcc-----cccceeeEEEeCCCc----EEEEEecccccCCcccCceEEEEEEEE
Confidence 44458899999999887532 1111111 111111111 11111 3566555432 24433333333333
Q ss_pred ecCCceEEEEEEEeC-CCC-CCCCeEEEEEE---EEEecCCCCCCCCCceEEEEEEEEEEeeeeeehhhhhccHHHHHHH
Q 003728 332 KADGKVFAILASVST-PEV-MYGGSFKTELL---FCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRE 406 (800)
Q Consensus 332 ~~~~~~~~v~~~~~t-pdV-P~g~~F~v~~~---y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~~k~~Ie~~~~~g~~~ 406 (800)
+.+++.|++...... |.. |--++.+-+.. |.|.| ++.+++.|+|....++..+++ +=+.+|++.-.+.+.+
T Consensus 119 r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~p---l~~~p~~t~l~~~~~~DlkG~-lP~~vv~~~~~~~~~~ 194 (204)
T cd08904 119 RYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSP---LPENPAYSKLVMFVQPELRGN-LSRSVIEKTMPTNLVN 194 (204)
T ss_pred EeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEE---CCCCCCceEEEEEEEeCCCCC-CCHHHHHHHhHHHHHH
Confidence 446777776554444 444 35566666654 45664 334556788888777666543 3456666666666655
Q ss_pred HHHHHHHH
Q 003728 407 TYEQFATF 414 (800)
Q Consensus 407 ~~~~~~~~ 414 (800)
.+..+.+.
T Consensus 195 f~~~~~~~ 202 (204)
T cd08904 195 LILDAKDG 202 (204)
T ss_pred HHHHHHHh
Confidence 55554443
No 325
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.52 E-value=53 Score=29.47 Aligned_cols=35 Identities=11% Similarity=0.361 Sum_probs=26.1
Q ss_pred cccceeeecceeEEeccCCCceeEEEEEccccceEE
Q 003728 718 LQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQ 753 (800)
Q Consensus 718 ~~G~ly~s~~~~cf~s~~~g~~~k~~~~~~di~~i~ 753 (800)
-+|++.+...-+=||-+. ...--+.|||.+|..|-
T Consensus 23 ~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~ 57 (122)
T COG4687 23 EYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVD 57 (122)
T ss_pred hcCeEEEcccceeecCCC-ChhheeEecHHHhheeh
Confidence 459999998888885444 44667889999996443
No 326
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=20.41 E-value=2.3e+02 Score=23.62 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=32.3
Q ss_pred CccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 003728 86 VSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (800)
Q Consensus 86 l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~~~~ 131 (800)
+..+-.++++.....|..|....... ....|.|.++++.....+.
T Consensus 3 lgtVY~qP~H~~~~KW~~L~dP~D~~-~G~kGYlKv~i~Vlg~GD~ 47 (72)
T PF08151_consen 3 LGTVYNQPDHQFYRKWALLTDPDDTS-AGVKGYLKVDISVLGPGDE 47 (72)
T ss_pred eeeeecCCCCeeEeceEEecCCCCCc-cCCceEEEEEEEEEcCCCc
Confidence 34444556666778999998765433 3678999999999877554
No 327
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=20.06 E-value=8.2e+02 Score=23.88 Aligned_cols=138 Identities=13% Similarity=0.026 Sum_probs=65.8
Q ss_pred eeeEEecChhhhhccccCCCCcccHHHHHhcCCcceeeecccccCCCCceEEEEEEEeecC-CCCceeEEeEEEEEEec-
Q 003728 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN-KLIKATKGFEEQTYLKA- 333 (800)
Q Consensus 256 ~d~~~~~~~~~~~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~sy~~~~~-~~~k~~~~~e~q~~~~~- 333 (800)
..-.++++++++++++... ....++...-.... .-. ..++. ..+.|..-.. .++..-..+-.......
T Consensus 45 ~~~~i~~s~e~v~~vi~d~--e~~~~w~~~~~~~~--vie----~~~~~--~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~ 114 (195)
T cd08876 45 AVAEVDASIEAFLALLRDT--ESYPQWMPNCKESR--VLK----RTDDN--ERSVYTVIDLPWPVKDRDMVLRSTTEQDA 114 (195)
T ss_pred EEEEEeCCHHHHHHHHhhh--HhHHHHHhhcceEE--Eee----cCCCC--cEEEEEEEecccccCCceEEEEEEEEEcC
Confidence 4445888999999998743 33344433221111 111 11111 2333333211 22332222222222222
Q ss_pred CCceEEEEEEEeCCCCCCC-C---eEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeeeeeehhhhhccHHHHHHHHHH
Q 003728 334 DGKVFAILASVSTPEVMYG-G---SFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYE 409 (800)
Q Consensus 334 ~~~~~~v~~~~~tpdVP~g-~---~F~v~~~y~i~~g~~~~~~~~~~~l~i~~~i~~~~s~~~k~~Ie~~~~~g~~~~~~ 409 (800)
+++.+++......+++|-. + .+.....|.|.+ .+++.|++.....+.+.++ +-+.+|..-+..+....+.
T Consensus 115 ~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~-----~~~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~ 188 (195)
T cd08876 115 DDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTP-----LGNGKTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLE 188 (195)
T ss_pred CCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEE-----CCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 2344544444333335532 2 234445588884 5678898888888888653 4555555555544433333
Done!