Query 003728
Match_columns 800
No_of_seqs 625 out of 3312
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 18:56:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003728.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1774-1778//hhsearch_pdb/003728hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r83_A Synaptotagmin-1; C2A-C2 1.0 1 1 224.5 30.2 102 2-106 20-127 (284)
2 1dqv_A Synaptotagmin III; beta 1.0 1 1 223.4 17.6 102 2-105 21-129 (296)
3 2fk9_A Protein kinase C, ETA t 1.0 1 1 163.0 13.8 116 534-658 26-156 (157)
4 2dmh_A Myoferlin; beta-sandwic 1.0 1 1 156.8 16.4 123 535-659 5-133 (140)
5 2r83_A Synaptotagmin-1; C2A-C2 1.0 1 1 156.3 19.9 210 535-749 17-246 (284)
6 3jzy_A Intersectin 2; C2 domai 1.0 1 1 155.8 14.5 119 535-658 385-507 (510)
7 1gmi_A Protein kinase C, epsil 1.0 1 1 155.1 13.1 118 535-661 4-135 (136)
8 3kwu_A MUNC13-1; calcium bindi 1.0 1 1 154.4 18.5 120 535-658 15-146 (148)
9 3m7f_B E3 ubiquitin-protein li 1.0 1 1 154.0 16.5 125 2-128 9-142 (176)
10 1cjy_A CPLA2, protein (cytosol 1.0 1 1 153.9 6.8 102 2-107 19-127 (749)
No 1
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=224.48 Aligned_cols=102 Identities=39% Similarity=0.698 Sum_probs=89.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECC---EEEEEEECCCCCCCEECCEEEEEEEC---CCCEEEEEEEECCCCCC
Q ss_conf 9999999854599999999997199999899---58983101499998231199999709---99989999996589999
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (800)
Q Consensus 2 ~L~V~V~~A~~L~~~d~~g~~DPyv~i~l~~---~~~kTkv~~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~~ 75 (800)
+|.|+|++|++|++++.+|.+||||++.+++ ++++|+++++++||+|||+|.|.+.. ....|.+.|||++.+++
T Consensus 20 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~ 99 (284)
T 2r83_A 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSK 99 (284)
T ss_dssp EEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSC
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCEECCEEEEEECHHHHCCCEEEEEEEECCCCCC
T ss_conf 99999998409998778999796799999819985476885159999825736999846688375789999998898877
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCEEEECCC
Q ss_conf 9533969941730015688998648999456
Q 003728 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (800)
+++||++.+++..+... .....|++|.+
T Consensus 100 ~~~lG~~~i~l~~l~~~---~~~~~w~~L~~ 127 (284)
T 2r83_A 100 HDIIGEFKVPMNTVDFG---HVTEEWRDLQS 127 (284)
T ss_dssp CCEEEEEEEEGGGCCCS---SCEEEEEECBC
T ss_pred CCEEEEEEECCHHCCCC---CCCEEEEEEEC
T ss_conf 74658999735013567---76303898303
No 2
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=1.00 E-value=1 Score=223.37 Aligned_cols=102 Identities=35% Similarity=0.669 Sum_probs=84.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEE---CCEEEEEEECCCCCCCEECCEEEEEEECC---CCEEEEEEEECCCCCC
Q ss_conf 99999998545999999999971999998---99589831014999982311999997099---9989999996589999
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (800)
Q Consensus 2 ~L~V~V~~A~~L~~~d~~g~~DPyv~i~l---~~~~~kTkv~~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~~ 75 (800)
+|.|+|++|++|++++.+|.+||||++.+ +.++++|+++++++||+|||+|.|.+... ...|.|.|||+|.+++
T Consensus 21 ~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~ 100 (296)
T 1dqv_A 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR 100 (296)
T ss_dssp EEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSC
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHCCCEEEEEEEECCCCCC
T ss_conf 89999999579998678998083999999858971476872479999738207999936899267889999997589887
Q ss_pred CCEEEEEEEE-CCCCCCCCCCCCCCEEEECC
Q ss_conf 9533969941-73001568899864899945
Q 003728 76 DDFVGFLKIP-VSRVFDADNKSLPTAWHSLQ 105 (800)
Q Consensus 76 d~~lG~v~i~-l~~l~~~~~~~~~~~w~~L~ 105 (800)
+++||++.++ +..+... ......|+.|.
T Consensus 101 ~~~iG~~~i~~l~~~~~~--~~~~~~w~~L~ 129 (296)
T 1dqv_A 101 HDLIGQVVLDNLLELAEQ--PPDRPLWRDIL 129 (296)
T ss_dssp CCEEEEEECCCTTGGGSS--CSSCCCCEECB
T ss_pred CCEEEEEEECCCCCCCCC--CCCCEEEECCC
T ss_conf 746799992531021337--76504662023
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=163.03 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=101.7
Q ss_pred CCCEEEEEEEEEEECCCCCCC----------CCCCCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEE
Q ss_conf 878499999999663999999----------8888729999999966-68660689999817249999843799967999
Q 003728 534 GDGWLLTVALIKGDNLAAVDS----------SGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDV 602 (800)
Q Consensus 534 ~~~~~L~V~ii~a~~L~~~d~----------~g~sDPYv~i~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i 602 (800)
...+.|+|+|++|++|+++|. .|.+||||++.+++++ .+|+++++|+||+|||+|.|.+.. ...|.|
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~ 103 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLEL 103 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEECCC--CCEEEE
T ss_conf 276089999999889987555543220236788878299999999966786522799998337589999189--999999
Q ss_pred EEEECCCCCCCCCEEEEEEEECEECCCC----CCEEEEEECCCCCCCCCCCCEEEEEEEE
Q ss_conf 9998148999894248899982114799----9531999777667674463149999980
Q 003728 603 EVYDFDGPFNEATSLGHAEINFVKSDIS----DLADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 603 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~----~~~~~w~~L~~k~~~~~~g~l~l~~~~~ 658 (800)
+|||+|. +++||+||++.|++.++..+ ...+.|++|+. +|+|+++++++
T Consensus 104 ~V~D~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~------~G~i~l~l~~~ 156 (157)
T 2fk9_A 104 AVFHETP-LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP------EGKVFVVITLT 156 (157)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS------SCEEEEEEEEC
T ss_pred EEEECCC-CCCCCEEEEEEEEHHHHHCCCCCCCCCCEEEECCC------CCEEEEEEEEE
T ss_conf 9998998-88898998999998993224577876337998999------93999999997
No 4
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=156.76 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=95.8
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECC---CCCEEEEEEEECCCCC
Q ss_conf 7849999999966399999988887299999999666866068999981724999984379---9967999999814899
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDGPF 611 (800)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~l~i~V~D~d~~~ 611 (800)
..+.|.|+|++|++|+..|. |.+||||++.+++++++|+++++++||+|||+|.|.+... ....|.|+|||+|. +
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-~ 82 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-I 82 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC-S
T ss_pred CCCEEEEEEEEEECCCCCCC-CCCCEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCC-C
T ss_conf 88489999998058998899-989949999999876783404699899617579998316565778889999997987-7
Q ss_pred CCCCEEEEEEEECEECCCCCCEEEEEE---CCCCCCCCCCCCEEEEEEEEC
Q ss_conf 989424889998211479995319997---776676744631499999803
Q 003728 612 NEATSLGHAEINFVKSDISDLADVWIP---LQGKLAQACQSKLHLRIFLNN 659 (800)
Q Consensus 612 ~~dd~lG~~~i~l~~l~~~~~~~~w~~---L~~k~~~~~~g~l~l~~~~~~ 659 (800)
++|++||++.+++.++..+...+.|++ |.+..+....|+|++++.+..
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEC
T ss_conf 799568999999899444798316885166337889887878999999978
No 5
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=156.25 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=140.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC---EEEEEECCCCCCCCEEEEEEEEEEECC--CCCEEEEEEEECCC
Q ss_conf 7849999999966399999988887299999999---666866068999981724999984379--99679999998148
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (800)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~---~~~~T~v~~~t~nP~WnE~f~f~~~~~--~~~~l~i~V~D~d~ 609 (800)
..+.|+|+|++|++|+.+|..|.+||||++.++. +.++|+++++++||.|||+|.|.+..+ ....|.|+|||+|.
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~ 96 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR 96 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCEECCEEEEEECHHHHCCCEEEEEEEECCC
T ss_conf 89999999998409998778999796799999819985476885159999825736999846688375789999998898
Q ss_pred CCCCCCEEEEEEEECEECCCCCCEEEEEECCCCCC--CCCCCCEEEEEEEECCCCCCCHHHH----HHHHHHHCCCC--C
Q ss_conf 99989424889998211479995319997776676--7446314999998038998612444----32222110332--2
Q 003728 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA--QACQSKLHLRIFLNNTKGSNVVKEY----LTKMEKEVGKK--I 681 (800)
Q Consensus 610 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~--~~~~g~l~l~~~~~~~~~~~~~~~~----l~k~~~~~gkk--~ 681 (800)
+++|++||++.+++.++..+...+.|++|....+ ....|.+++.+.+....+...+... |..++ ..|+. |
T Consensus 97 -~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d-~~~~~dpy 174 (284)
T 2r83_A 97 -FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPY 174 (284)
T ss_dssp -SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEE
T ss_pred -CCCCCEEEEEEECCHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCC-CCCCCCEE
T ss_conf -8777465899973501356776303898303355665666638999996076795499999967888767-89996848
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECC--CC-CCE-EEECCEEEEECCCCCCEE---EEEEECCCC
Q ss_conf 246877543112234888641232010202433023--56-514-443133578615799504---999974421
Q 003728 682 NLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKML--LQ-GRL-FLSARIIGFHANLFGHKT---NFFFLWEDI 749 (800)
Q Consensus 682 ~~~s~~~n~~f~~~F~lp~~E~l~~~~~c~~~~~~~--~~-G~l-y~s~~~~cF~s~~~g~~~---~~~i~~~~i 749 (800)
...+-..+......++ +++..+..++.|...+. +. ..+ .....+.+|+.+.+|.+. .+.|++..+
T Consensus 175 v~v~~~~~~~~~~~~k---T~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 175 VKIHLMQNGKRLKKKK---TTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp EEEEEEETTEEEEEEE---CCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred EEEEEEECCCEEEEEC---CCEECCCCCCEECEEEEEECCHHHHCCEEEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 9999986993731331---51331899977740389848979908538999999689888885788999898888
No 6
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=1.00 E-value=1 Score=155.80 Aligned_cols=119 Identities=22% Similarity=0.268 Sum_probs=105.5
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 78499999999663999999888872999999996668660689999817249999843799967999999814899989
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (800)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i~V~D~d~~~~~d 614 (800)
..+.|+|+|++|++|+++|..|.+||||++.++++.++|+++++|+||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~-~~~~ 463 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ-FSPD 463 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS-SSSC
T ss_pred CCCEEEEEECEEECCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCC-CCCC
T ss_conf 776699994545369999999997807999999960318856899899327438998348989979999983898-8888
Q ss_pred CEEEEEEEECEECCCCCC----EEEEEECCCCCCCCCCCCEEEEEEEE
Q ss_conf 424889998211479995----31999777667674463149999980
Q 003728 615 TSLGHAEINFVKSDISDL----ADVWIPLQGKLAQACQSKLHLRIFLN 658 (800)
Q Consensus 615 d~lG~~~i~l~~l~~~~~----~~~w~~L~~k~~~~~~g~l~l~~~~~ 658 (800)
|+||++.+++.++..+.. ...|++|.+. ..|+|++++.+.
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~----~~G~i~l~~~l~ 507 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----PTGEVWVRFDLQ 507 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS----SSCEEEEEEEEE
T ss_pred CCEEEEEEEHHHHCCCCCCCCCEEEEECCCCC----CCCEEEEEEEEE
T ss_conf 70389999999925556778844566357887----883699999999
No 7
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=155.11 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=100.5
Q ss_pred CCEEEEEEEEEEECCCCCCCCCC-----------CCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEE
Q ss_conf 78499999999663999999888-----------8729999999966-68660689999817249999843799967999
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGF-----------CDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDV 602 (800)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~-----------sDPYv~i~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i 602 (800)
..+.|+|+|++|++|+++|..|+ +||||++.++++. .+|+++++|+||.|||+|+|.+... ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCEEEEEECCC--CEEEE
T ss_conf 4408999999686999866365113355467767695899998996700335787996974488899980689--99999
Q ss_pred EEEECCCCCCCCCEEEEEEEECEECCCCC--CEEEEEECCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 99981489998942488999821147999--531999777667674463149999980389
Q 003728 603 EVYDFDGPFNEATSLGHAEINFVKSDISD--LADVWIPLQGKLAQACQSKLHLRIFLNNTK 661 (800)
Q Consensus 603 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~~--~~~~w~~L~~k~~~~~~g~l~l~~~~~~~~ 661 (800)
+|||+|. +++||+||.+.+++.++..+. ..+.|++|.. .|+|++++.+..+.
T Consensus 82 ~V~d~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 82 AVFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEEE
T ss_pred EEEECCC-CCCCCEEEEEEEEHHHHCCCCCCCCCEEEECCC------CEEEEEEEEEEECC
T ss_conf 9996998-888988999999889921057987117898599------80999999999168
No 8
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=1.00 E-value=1 Score=154.36 Aligned_cols=120 Identities=23% Similarity=0.412 Sum_probs=105.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC---
Q ss_conf 78499999999663999999888872999999996668660689999817249999843799967999999814899---
Q 003728 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPF--- 611 (800)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i~V~D~d~~~--- 611 (800)
..+.|+|+|++|++|+++|..|.+||||++.++++.++|+++++++||.|||+|.|.+... ...|.|+|||+|. +
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~-~~~~ 92 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD-DIKS 92 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC-SHHH
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCEEEEEECCC-CCEEEEEEEECCC-CCCC
T ss_conf 5537999999610998889998918379999999998877557998987246899984499-9989999998998-8443
Q ss_pred --------CCCCEEEEEEEECEECCCCCCEEEEEECCCCCCC-CCCCCEEEEEEEE
Q ss_conf --------9894248899982114799953199977766767-4463149999980
Q 003728 612 --------NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRIFLN 658 (800)
Q Consensus 612 --------~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~-~~~g~l~l~~~~~ 658 (800)
+.|++||++.+++.++ ....+.|++|..+.+. ...|.|+|++.++
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEEHHHC--CCCCCEEEECCCCCCCCCCCEEEEEEEEEE
T ss_conf 310123577896579999998997--688988998406888888766899999999
No 9
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=153.97 Aligned_cols=125 Identities=29% Similarity=0.520 Sum_probs=74.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECC------EEEEEEECCCCCCCEECCEEEEEEECCCCEEEEEEEECCCCCC
Q ss_conf 9999999854599999999997199999899------5898310149999823119999970999989999996589999
Q 003728 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN 75 (800)
Q Consensus 2 ~L~V~V~~A~~L~~~d~~g~~DPyv~i~l~~------~~~kTkv~~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~ 75 (800)
.|.|+|++|++|++++.+|.+||||++.++. .+++|+++++++||+|||+|.|.+.+....|.|.|||++.+++
T Consensus 9 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~ 88 (176)
T 3m7f_B 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTR 88 (176)
T ss_dssp EEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 99999997368987678989581899999887788651165761779999864666999975999979999998988778
Q ss_pred CCEEEEEEEECCCCCCCCCC---CCCCEEEECCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 95339699417300156889---986489994569989999722299999999936
Q 003728 76 DDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (800)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (800)
++|||++.|+|..+...... ....+||+|.++... ....|+|+|+++|.+.
T Consensus 89 d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 89 DDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK--SRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTT--CCCCSEEEEEEEECC-
T ss_pred CCEEEEEEEEHHHCCCCCCCCCCCCCCCEEECCCCCCC--CCCCEEEEEEEEEEEC
T ss_conf 96779999998994556775454443117883356788--9657799999999809
No 10
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=1.00 E-value=1 Score=153.87 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=90.6
Q ss_pred EEEEEEEEEECCCC---CCCCCCCCCEEEEEEC---CEEEEEEECCCCCCCEECCEEEEEEEC-CCCEEEEEEEECCCCC
Q ss_conf 99999998545999---9999999719999989---958983101499998231199999709-9998999999658999
Q 003728 2 KLVVRVIEARNIPA---MDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYF 74 (800)
Q Consensus 2 ~L~V~V~~A~~L~~---~d~~g~~DPyv~i~l~---~~~~kTkv~~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~ 74 (800)
+|.|+|++|++|++ +|.+|.+||||++.++ ..+++|+++++++||+|||+|.|.+.. ....|.|+|||+|.++
T Consensus 19 ~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ 98 (749)
T 1cjy_A 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVM 98 (749)
T ss_dssp EEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSS
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCEECCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCC
T ss_conf 89999999989987435688999585899999268887686613758989853137999952799987999999888777
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCEEEECCCC
Q ss_conf 995339699417300156889986489994569
Q 003728 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (800)
Q Consensus 75 ~d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~~ 107 (800)
+++||++.+++.++.. +.....|++|.+.
T Consensus 99 -ddfIG~v~I~L~~L~~---g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 99 -DETLGTATFTVSSMKV---GEKKEVPFIFNQV 127 (749)
T ss_dssp -CEEEEEECCBSTTSCT---TCCCCEEEEETTT
T ss_pred -CCEEEEEEEEHHHCCC---CCCEEEEEECCCC
T ss_conf -8556799988898178---9832778855887
Done!