BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003729
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/815 (43%), Positives = 523/815 (64%), Gaps = 25/815 (3%)
Query: 1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPG 60
+ +LNDG K++ P++F + YG Y KGGI T+VK P+ ++FK L++ L +P
Sbjct: 210 LDKLNDGTLFKVEVLGPFAFRIGS-VKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNP- 267
Query: 61 DFLLSDFSKFDRPPPLHLAFQALDKF-VSELGRFPVAGSEEDAQKLISVATNIN----ES 115
+F+ SDF+KFDR LHL FQAL +F V G P ++EDA +LI + T+++ E
Sbjct: 268 EFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEV 327
Query: 116 LGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSV 175
LG+G D+N L++ ++ AR + + A FGG+V QEV+KACSGKF PL QF YFDS+
Sbjct: 328 LGEGV--DVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSL 385
Query: 176 ESLPTE---PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVA 232
ESLP P + +P+NSRYD QI+VFG QKK+ ++KVF+VGSGA+GCE LKN A
Sbjct: 386 ESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWA 445
Query: 233 LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLN--IE 290
L+G+ G+ G + +TD+D IEKSNL+RQFLFR ++G+ +NP L I
Sbjct: 446 LLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKIN 505
Query: 291 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350
A ++VGPETE +F+D+FWE++ V NALDNV+AR YVD+RC++++KPLLESGTLG K N
Sbjct: 506 AKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGN 565
Query: 351 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAY 410
TQ++IP LTE+Y +SRDPPEK P+CT+ SFP+ IDH + WA+S F+G + VN Y
Sbjct: 566 TQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMY 625
Query: 411 LSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQL 470
L+ P ++ +GD + LE + + L K F+DCI WARL+FE F++ +KQL
Sbjct: 626 LTQPNFVEQTLKQSGDVKGV--LESISDSL-SSKPHNFEDCIKWARLEFEKKFNHDIKQL 682
Query: 471 IFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTN 530
+F FP+DA TS G PFWS KR P PL+F + H HFV+A + LRA +GI D +
Sbjct: 683 LFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNS 742
Query: 531 NPKM--LAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKN 588
P + +D +++P+F P + KI ++ + + + + I+ L+ L +
Sbjct: 743 KPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPD--PS 800
Query: 589 LPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATS 648
+GF+L+P+ FEKDDDTN+H++ I +N RA+NY I D+ K KFIAGRIIPAIAT+
Sbjct: 801 TLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATT 860
Query: 649 TAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWD 707
T++ TGLV LELYK++D +E Y+N F NLALP F +EP+ ++ + + +WD
Sbjct: 861 TSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWD 920
Query: 708 RWILKDNPTLRELIQWL-KDKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREV 764
R+ +K + L +LI+ KD+GL +S G LL+ S FP + KER++ + L + V
Sbjct: 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLV 980
Query: 765 AKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYF 799
K ++P + + + + +D E D+++P I+I+
Sbjct: 981 TKKDIPAHVSTMILEICADDKEGEDVEVPFITIHL 1015
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252
S Y Q+ V G + K++ + V I+G LG E KNV L GV +T+ D + +
Sbjct: 8 SLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKS-----MTVFDPEPV 62
Query: 253 EKSNLSRQFLFRDWNIGQ 270
+ ++LS QF + +IGQ
Sbjct: 63 QLADLSTQFFLTEKDIGQ 80
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/810 (43%), Positives = 509/810 (62%), Gaps = 30/810 (3%)
Query: 1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPG 60
M LNDG PRK++ PY+F++ + G+ G+ TQVK P ++FK LRE+L+DP
Sbjct: 207 MPGLNDGTPRKVEVKGPYTFSIG-SVKDLGSAGYNGVFTQVKVPTKISFKSLRESLKDP- 264
Query: 61 DFLLSDFSKFDRPPPLHLAFQALDKFV-SELGRFPVAGSEEDAQKLISVATNINESLGDG 119
+++ DF K RPP H+AFQAL F + G P ++ DA + I +L
Sbjct: 265 EYVYPDFGKMMRPPQYHIAFQALSAFADAHEGSLPRPRNDIDAAEFFEFCKKIASTL-QF 323
Query: 120 RVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP 179
VE ++ KL++ ++ AR L M+A GG V QEV+KA + KF+PL Q+FYFDS+ESLP
Sbjct: 324 DVE-LDEKLIKEISYQARGDLVAMSAFLGGAVAQEVLKATTSKFYPLKQYFYFDSLESLP 382
Query: 180 TEPLDSTEF-KPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSC 238
+ S E KP RYD QI+VFG++ Q+K+ F+VG+GA+GCE LKN A+MGV+
Sbjct: 383 SSVTISEETCKPRGCRYDGQIAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVAT 442
Query: 239 GNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLN--IEALQNRV 296
G G +++TD D IEKSNL+RQFLFR ++G+ +NP L I + Q RV
Sbjct: 443 GESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERV 502
Query: 297 GPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIP 356
GPE+E +F D F+E ++ V NALDNV AR+YVD+RC++F+KPLLESGTLG K NTQ+V+P
Sbjct: 503 GPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGNTQVVVP 562
Query: 357 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVE 416
HLTE+YG+S+DPPEK P+CT+ +FP+ I+H + WAR FEGL ++ VN YLS+P
Sbjct: 563 HLTESYGSSQDPPEKSFPICTLKNFPNRIEHTIAWARDLFEGLFKQPIDNVNMYLSSPNF 622
Query: 417 YTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPE 476
TS+ + + R+ LE + + L EK F++CI WARL+F+ +F+N ++QL+F FP+
Sbjct: 623 LETSLKTS--SNPREVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPK 680
Query: 477 DAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLA 536
D+ TSTG PFWS PKR P PL F + H F++AA+ L A +G+ +P +
Sbjct: 681 DSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYAFNYGL---KSETDPAIYE 737
Query: 537 EAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS----- 591
+ P F PK KI +E TA+ D +L+ +LP
Sbjct: 738 RVLAGYNPPPFAPKSGIKIQVNENEEAPETAANKDKQ-------ELKSIADSLPPPSSLV 790
Query: 592 GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAM 651
GFRL P +FEKDDD+N+H+D I +N+RA NY I D+ K KF+AG+I+PA+ TSTA+
Sbjct: 791 GFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAV 850
Query: 652 ATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVIKHRDMSWTVWDRWI 710
+GLVCLEL K++DG K+E+Y+N F NLA+ LF+ ++P+ PK+ + +WDR+
Sbjct: 851 VSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYN 910
Query: 711 LKDNPTLRELIQWL-KDKGLNAYSISCGSCLLFNSMFPRHK--ERMDKKVVDLAREVAKV 767
L D TL+ELI + K++GL +S G LL+ + P K ER+ K+ +L ++ K
Sbjct: 911 LPDC-TLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKK 969
Query: 768 ELPPYRRHLDVVVACEDDEDNDIDIPLISI 797
+L P+R+HL + + C+D D+++P I I
Sbjct: 970 KLEPFRKHLVLEICCDDANGEDVEVPFICI 999
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 195 YDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEK 254
Y Q+ V G + K++ + V I+G LG E KNV L GV +T+ D
Sbjct: 9 YSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVK-----SVTLYDPQPTRI 63
Query: 255 SNLSRQFLFRDWNIG 269
+LS Q+ + +IG
Sbjct: 64 EDLSSQYFLTEDDIG 78
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 215 bits (547), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 165/280 (58%), Gaps = 21/280 (7%)
Query: 370 EKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNP--VEYTTSMANAGDA 427
EK P+CT+ +FP+ I+H L WAR EFEGL ++ VN YL++ VE T +A
Sbjct: 11 EKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGT--- 67
Query: 428 QARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFW 487
Q + LE V L ++ + + DC+TWA + + N ++QL+ FP D TS+GAPFW
Sbjct: 68 QPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFW 127
Query: 488 SAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDF 547
S PKR PHPL F + HL +VMAA+ L A+T+G+ + + +A + V VP+F
Sbjct: 128 SGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEF 184
Query: 548 LPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEK 602
PK KI ++ + ASVDD+ +LE+ + LPS GF++ PI FEK
Sbjct: 185 TPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEK 236
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRII 642
DDD+N+HMD I +N+RA NY I D+ K+K IAG+II
Sbjct: 237 DDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Query: 205 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 264
+L + + +V +VG+G +GCE LKN+ L G S + + D D I+ SNL+RQFLF+
Sbjct: 12 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 66
Query: 265 DWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNA 324
++G+ P+ NI A + + NV F+ V+NALDN A
Sbjct: 67 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNV---EFFRQFILVMNALDNRAA 123
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHN 384
R +V++ CL PL+ESGT G + +TE Y P ++ P CT+ + P
Sbjct: 124 RNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSE 183
Query: 385 IDHCLTWARSEFEGLLEKTPAE 406
HC+ WA+ F L + A+
Sbjct: 184 PIHCIVWAKYLFNQLFGEEDAD 205
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D MD + AN+R +S+ + K +AG IIPAIAT+ A+ GL+ LE K
Sbjct: 347 DKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLK 406
Query: 663 VLDGGHKLEDYRNTFAN 679
+L G K++ R F N
Sbjct: 407 ILSG--KIDQCRTIFLN 421
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Query: 205 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 264
+L + + +V +VG+G +GCE LKN+ L G S + + D D I+ SNL+RQFLF+
Sbjct: 30 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 84
Query: 265 DWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNA 324
++G+ P+ NI A + + NV F+ V+NALDN A
Sbjct: 85 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNV---EFFRQFILVMNALDNRAA 141
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHN 384
R +V++ CL PL+ESGT G + +TE Y P ++ P CT+ + P
Sbjct: 142 RNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSE 201
Query: 385 IDHCLTWARSEFEGLLEKTPAE 406
HC+ WA+ F L + A+
Sbjct: 202 PIHCIVWAKYLFNQLFGEEDAD 223
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D MD + AN+R +S+ + K +AG IIPAIAT+ A+ GL+ LE K
Sbjct: 365 DKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLK 424
Query: 663 VLDGGHKLEDYRNTFAN 679
+L G K++ R F N
Sbjct: 425 ILSG--KIDQCRTIFLN 439
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 8/202 (3%)
Query: 205 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 264
+L + + +V +VG+G +GCE LKN+ L G S + + D D I+ SNL+RQFLF+
Sbjct: 10 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 64
Query: 265 DWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNA 324
++G+ P+ NI A + + NV F+ V+NALDN A
Sbjct: 65 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNV---EFFRQFILVMNALDNRAA 121
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHN 384
R +V++ CL PL+ESGT G + +TE Y P ++ P T+ + P
Sbjct: 122 RNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSE 181
Query: 385 IDHCLTWARSEFEGLLEKTPAE 406
HC+ WA+ F L + A+
Sbjct: 182 PIHCIVWAKYLFNQLFGEEDAD 203
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D MD + AN+R +S+ + K +AG IIPAIAT+ A+ GL+ LE K
Sbjct: 345 DKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLK 404
Query: 663 VLDGGHKLEDYRNTFAN 679
+L G K++ R F N
Sbjct: 405 ILSG--KIDQCRTIFLN 419
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 405 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 459
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 460 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 514
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 515 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 574
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PMCT+ S P +HC+ + R
Sbjct: 575 NFPMCTIASMPRLPEHCIEYVR 596
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 613 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 672
Query: 663 V 663
+
Sbjct: 673 I 673
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 203
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PMCT+ S P +HC+ + R
Sbjct: 204 NFPMCTIASMPRLPEHCIEYVR 225
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 63 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 117
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 118 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 172
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 173 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 232
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PMCT+ S P +HC+ + R
Sbjct: 233 NFPMCTIASMPRLPEHCIEYVR 254
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 271 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330
Query: 663 V 663
+
Sbjct: 331 I 331
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 44 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 98
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 99 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 153
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 154 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 213
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PMCT+ S P +HC+ + R
Sbjct: 214 NFPMCTIASMPRLPEHCIEYVR 235
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 252 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 311
Query: 663 V 663
+
Sbjct: 312 I 312
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N Q+++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPPQV 203
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PM T+ S P +HC+ + R
Sbjct: 204 NFPMATIASMPRLPEHCIEYVR 225
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 31 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 85
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 86 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 140
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 141 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 200
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PM T+ S P +HC+ + R
Sbjct: 201 NFPMATIASMPRLPEHCIEYVR 222
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 239 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 298
Query: 663 VLDGGH 668
+ +
Sbjct: 299 IATSAY 304
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 203
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PM T+ S P +HC+ + R
Sbjct: 204 NFPMATIASMPRLPEHCIEYVR 225
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 24/202 (11%)
Query: 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 265
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 266 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 325
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 326 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 371
+++ + PL++ GT G K N +++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPPQV 203
Query: 372 QAPMCTVHSFPHNIDHCLTWAR 393
PM T+ S P +HC+ + R
Sbjct: 204 NFPMATIASMPRLPEHCIEYVR 225
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 603 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 662
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 663 VLDGGH 668
+ +
Sbjct: 302 IATSAY 307
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 194 RYDAQISVFGAKL--QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251
RY QI + L Q+KL D++V I+G G LG +A GV G L + DDD
Sbjct: 10 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 64
Query: 252 IEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWEN 311
+ SNL RQ LF +I + +NP + + ALQ R+ T D
Sbjct: 65 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRL---TGEALKDAV-AR 120
Query: 312 ITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIP 356
V++ DN+ R ++ C+ PL+ + +G ++ P
Sbjct: 121 ADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTP 165
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 194 RYDAQISVFGAKL--QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251
RY QI + L Q+KL D++V I+G G LG +A GV G L + DDD
Sbjct: 8 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 62
Query: 252 IEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWEN 311
+ SNL RQ LF +I + +NP + + ALQ R+ T D
Sbjct: 63 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRL---TGEALKDAV-AR 118
Query: 312 ITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIP 356
V++ DN+ R ++ C+ PL+ + +G ++ P
Sbjct: 119 ADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTP 163
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 194 RYDAQISVFGAKL--QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251
RY+ QI + G Q+ L+D++V IVG G LGC + +A GV G LT+ D D
Sbjct: 11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGV-----GNLTLLDFDT 65
Query: 252 IEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWEN 311
+ SNL RQ L D +GQ INP + I + DD
Sbjct: 66 VSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAI--------TPVNALLDDAELAA 117
Query: 312 ITC----VINALDNVNARLYVDQRCLYFQKPLLESGTL 345
+ V++ DNV R ++ C + PL+ +
Sbjct: 118 LIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAI 155
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252
++YD QI ++G + QK+L ++V +VG LG E KN+ L GV LT+ D + +
Sbjct: 17 AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVK-----GLTMLDHEQV 71
Query: 253 EKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENI 312
+ QFL R ++G+ +NP ++++ + + E+ F +
Sbjct: 72 TPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCL 131
Query: 313 TCVINALDNVNARLYVDQRC 332
TC + + + VDQ C
Sbjct: 132 TCC-----SRDVIVKVDQIC 146
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 23/147 (15%)
Query: 39 TQVKQPKVLNFKPLREALEDPGDFLLSDFSK------FDRPPPLHLAFQALDKFVSELGR 92
T VK+ V F P++EALE D+S R + Q L KF ++ GR
Sbjct: 205 TMVKKKVV--FCPVKEALE-------VDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGR 255
Query: 93 FPVAGS-EEDAQKLISVATNINESLGDGRVEDINTKLL-RHFAFGARAVLNPMAAMFGGI 150
P + + EED++ L+ + ++ +SLG I+ LL F + + P+ A+ GGI
Sbjct: 256 DPSSDTYEEDSELLLQIRNDVLDSLG------ISPDLLPEDFVRYCFSEMAPVCAVVGGI 309
Query: 151 VGQEVVKACSGKFHPLYQFFYFDSVES 177
+ QE+VKA S + P FF+FD ++
Sbjct: 310 LAQEIVKALSQRDPPHNNFFFFDGMKG 336
>pdb|2V31|A Chain A, Structure Of First Catalytic Cysteine Half-Domain Of Mouse
Ubiquitin-Activating Enzyme
Length = 112
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREAL 56
M +LN +P +IK PY+F++ DT+N+ Y++GGIV+QVK PK ++FK L +L
Sbjct: 56 MIQLNGCQPMEIKVLGPYTFSIC-DTSNFSDYIRGGIVSQVKVPKKISFKSLPASL 110
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 178 LPTEPLDSTEFKPINSRYDAQI---SVFGAK---LQKKLEDAKVFIVGSGALGCEFLKNV 231
+P E +STE N+RY +GA +Q KL++AKV I+G G +G +
Sbjct: 79 IPGEYNNSTE----NNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVIL 134
Query: 232 ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEA 291
A G+ G++ + D+D IE +NL+RQ LF + ++G+ N +++
Sbjct: 135 ATSGI-----GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 189
Query: 292 LQNRVGPETE--NVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 343
+ + T+ V + W V++A N +V++ C+ +P + +G
Sbjct: 190 IALNINDYTDLHKVPEADIW-----VVSADHPFNLINWVNKYCVRANQPYINAG 238
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 22/176 (12%)
Query: 178 LPTEPLDSTEFKPINSRYDAQI---SVFGAK---LQKKLEDAKVFIVGSGALGCEFLKNV 231
+P E +STE N+RY +GA +Q KL++AKV I+G G +G +
Sbjct: 82 IPGEYNNSTE----NNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVIL 137
Query: 232 ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEA 291
A G+ G++ + D+D IE +NL+RQ LF + ++G+ N +++
Sbjct: 138 ATSGI-----GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 192
Query: 292 LQNRVGPETE--NVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 345
+ + T+ V + W V++A N +V++ C+ +P + +G +
Sbjct: 193 IALNINDYTDLHKVPEADIW-----VVSADHPFNLINWVNKYCVRANQPYINAGYV 243
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 194 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 254 KSNLSRQFLFRDWNIGQ 270
+ F + +IG+
Sbjct: 67 GEDAGNNFFLQRSSIGK 83
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 61 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 117
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 410 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 469
Query: 118 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
+ + + F A + +AA GG QEV+K + +F
Sbjct: 470 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 513
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 194 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 254 KSNLSRQFLFRDWNIGQ 270
+ F + +IG+
Sbjct: 67 GEDAGNNFFLQRSSIGK 83
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 61 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 117
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 405 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 464
Query: 118 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
+ + + F A + +AA GG QEV+K + +F
Sbjct: 465 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 508
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 194 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 15 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 69
Query: 254 KSNLSRQFLFRDWNIGQ 270
+ F + +IG+
Sbjct: 70 GEDAGNNFFLQRSSIGK 86
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 61 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 117
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 413 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 472
Query: 118 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
+ + + F A + +AA GG QEV+K + +F
Sbjct: 473 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 516
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 194 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 254 KSNLSRQFLFRDWNIGQ 270
+ F + +IG+
Sbjct: 69 GEDAGNNFFLQRSSIGK 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 61 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 117
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 412 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 471
Query: 118 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
+ + + F A + +AA GG QEV+K + +F
Sbjct: 472 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 515
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 194 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 254 KSNLSRQFLFRDWNIGQ 270
+ F + +IG+
Sbjct: 69 GEDAGNNFFLQRSSIGK 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 61 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 117
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 407 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 466
Query: 118 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 163
+ + + F A + +AA GG QEV+K + +F
Sbjct: 467 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 510
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 270 Q 270
+
Sbjct: 380 K 380
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 270 Q 270
+
Sbjct: 380 K 380
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 378
Query: 270 Q 270
+
Sbjct: 379 K 379
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLF 263
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALY 372
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 86
Query: 270 Q 270
+
Sbjct: 87 K 87
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 86
Query: 270 Q 270
+
Sbjct: 87 K 87
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 36 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 90
Query: 270 Q 270
+
Sbjct: 91 K 91
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 232 ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEA 291
A M CG GKL + D D +E +N++R F F+ G INP + E
Sbjct: 52 AEMLTRCG-IGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEV 109
Query: 292 LQ-NRVGPETENVFDDTFWEN-------ITCVINALDNVNARLYVDQRCLYFQKPLLESG 343
N E F D + V++ +DN AR+ ++ C + +ESG
Sbjct: 110 HNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESG 169
Query: 344 TL--GAKCNTQMVIP 356
+ Q++IP
Sbjct: 170 VSENAVSGHIQLIIP 184
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 49 FKPLREALE-DPGDFLLSDFSKFDRPPPL-HLAFQALDKFVSELGRFPVAGSEEDA--QK 104
F+ L E + DP D + D D P + +L F + + V L FP G E +
Sbjct: 184 FQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGF-GMSQKVGHLDFFPNGGKEMPGCQKN 242
Query: 105 LISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNP 142
++S +IN + +G + LR + + A ++LNP
Sbjct: 243 ILSTIVDIN-GIWEGTQNFVACNHLRSYKYYASSILNP 279
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 708 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 753
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 708 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 753
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 708 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 753
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 265 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 310
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 708 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 753
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 708 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 753
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 708 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 753
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 258 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 303
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 133 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 177
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 133 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 177
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 142 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 186
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 129 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 173
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 142 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 186
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 133 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 177
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 130 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 174
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 325 RLYVDQRCLYFQKPLLESGTLGAKC--NTQMVIPHLTENYGASRD 367
+ + D + L + ++ SG GA NT+ V+ +LTE+YG +D
Sbjct: 132 KAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQD 176
>pdb|3KD3|A Chain A, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
pdb|3KD3|B Chain B, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
Length = 219
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 396 FEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVL 437
E +L+K+PA++ +EY T++ GD RD+L++ L
Sbjct: 25 LEPILQKSPAKLKE-----IEYITNLGXQGDISFRDSLQKRL 61
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 374 PMCTVHSFPHNIDHCLTWARSEFEGLL--EKTPAEVNAYLSNP---VEYTTSMANAGDAQ 428
P CT+ + P HC+ WA+ F L E EV+ ++P E T + A A +
Sbjct: 6 PGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASN 65
Query: 429 ARDNLERV 436
+++R+
Sbjct: 66 EDGDIKRI 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,497,800
Number of Sequences: 62578
Number of extensions: 1047977
Number of successful extensions: 2469
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2327
Number of HSP's gapped (non-prelim): 84
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)