Query 003730
Match_columns 799
No_of_seqs 540 out of 6103
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 18:00:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003730.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1779-1782//hhsearch_pdb/003730hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 357.6 22.2 336 31-385 8-381 (768)
2 4ecn_A Leucine-rich repeat pro 1.0 1 1 344.0 26.6 335 29-385 263-741 (876)
3 4eco_A Uncharacterized protein 1.0 1 1 343.4 18.2 337 31-385 26-501 (636)
4 1ogq_A PGIP-2, polygalacturona 1.0 1 1 327.2 18.0 281 31-340 2-287 (313)
5 3rgz_A Protein brassinosteroid 1.0 1 1 325.1 22.2 295 80-385 98-407 (768)
6 2id5_A Lingo-1, leucine rich r 1.0 1 1 306.9 23.4 326 62-394 6-342 (477)
7 3v47_A TOLL-like receptor 5B a 1.0 1 1 306.7 21.4 324 61-390 6-413 (455)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 294.2 26.3 201 61-263 5-216 (606)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 292.6 23.3 332 51-394 6-367 (597)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 291.9 24.4 319 60-385 5-389 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=357.59 Aligned_cols=336 Identities=25% Similarity=0.389 Sum_probs=263.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCC---CC--------
Q ss_conf 9998899999999986569999998999999999999401305899999821387999158867533---79--------
Q 003730 31 ITDPIEVSALRSIKKSLVDDYSKLSNWNRGDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGN---LS-------- 99 (799)
Q Consensus 31 ~~~~~e~~~L~~~k~~~~~~~~~l~~W~~~~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~g~---~~-------- 99 (799)
.+.++|+.||++||+++.|+. .+++|..+++|| .|+||+|+. .+++.|+++++++.|. ++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C-~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPC-TFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGG-GSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCC-CCCCEEECC-------CCEEEEECCCCCCCCCCCCCCHHHHCCCC
T ss_conf 687899999999996678962-146878999876-884138789-------92789877899867755766965731680
Q ss_pred ---------------CCCCCCCCCCEEECCCCCCCCCCCH--HHCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCEEEC
Q ss_conf ---------------6747999764998228987778950--00168755646620777889974102-78987763651
Q 003730 100 ---------------PEIGRLSYLTILDFMWNKISGSIPK--EIGNIKSLELLLLNGNELTGSLPEEL-GYLPKLDRIQI 161 (799)
Q Consensus 100 ---------------~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L 161 (799)
..++.+++|++|+|++|.+++.+|. .++++++|++|++++|.+.+..|..+ ..+++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 22467868886787033245788998989898578707896787278899989896882677479778563889998989
Q ss_pred CCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 245467997711---37888878798468988899982269999886786547868788992489999996895647757
Q 003730 162 DQNYISGSLPKS---FANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNF 238 (799)
Q Consensus 162 s~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 238 (799)
++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|++++.+|. +..+++|++|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCC
T ss_conf 79835885871556643589889898978803465784--5478689898928827887711-12699999897948858
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCHH
Q ss_conf 8988850012899987999005889668997789998648984367687889998876--78598984387289986410
Q 003730 239 EGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSN 316 (799)
Q Consensus 239 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~--~~L~~L~Ls~N~l~~~~p~~ 316 (799)
.+ .+|..+..+++|+.|++++|.+++..|.. .+++|+.|++++|.+++.+|..... .+|+.|++++|++++.+|..
T Consensus 236 ~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 236 SG-DFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CS-CHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CC-CCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHH
T ss_conf 78-16577744888898989888665716724-36878989791785577258888844686889989689677842367
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCC-HHHHCCCCCCCCCEEECCCCCCC-CCCCCCC-CC-CCCEEEECCCCCC
Q ss_conf 479987867846144288889975-02001247565432871487688-9888888-89-8615641389632
Q 003730 317 FSGLPRLQRLFIANNSLSGSIPSS-IWQSRTLNATETFILDFQNNNLT-NISGSFN-IP-PNVTVRLRGNPFC 385 (799)
Q Consensus 317 ~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~~~l~~L~l~~N~l~-~~~~~~~-~~-~l~~l~l~~N~~~ 385 (799)
|..+++|+.|++++|.+.+.+|.. +..+.. ++.|++++|.++ .+|..+. .+ .+..+++.+|.+.
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~-----L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRG-----LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTT-----CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHCCCC-----CCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCC
T ss_conf 7558776677897885257379788724888-----8788484784376230989863227719986278747
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=343.98 Aligned_cols=335 Identities=21% Similarity=0.291 Sum_probs=259.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC------CCCCCCCC------------CEEEECCCCCCCCCCEEEEEEEC
Q ss_conf 9999988999999999865699999989999------99999999------------40130589999982138799915
Q 003730 29 DSITDPIEVSALRSIKKSLVDDYSKLSNWNR------GDPCTSNW------------TGVLCFNTTMDDGYLHLRELQLL 90 (799)
Q Consensus 29 ~~~~~~~e~~~L~~~k~~~~~~~~~l~~W~~------~~~C~~~w------------~gv~C~~~~~~~~~~~l~~L~l~ 90 (799)
...+...|+.||++||+++.++ +|+. .+||+|.| .||.|+.. .+++.|+|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls 331 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLA 331 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECT
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC------CCEEEEECC
T ss_conf 4546317899999999973799-----98868986533677640346665453357684283699------979899872
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCC------------------------------------------------
Q ss_conf 88675337967479997649982-28987778------------------------------------------------
Q 003730 91 NLNLSGNLSPEIGRLSYLTILDF-MWNKISGS------------------------------------------------ 121 (799)
Q Consensus 91 ~~~l~g~~~~~l~~l~~L~~L~L-s~N~l~~~------------------------------------------------ 121 (799)
++++.|.+|+.+++|++|++|+| ++|.++|.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 47899948557741555628430125633566642223445441156788877766665420375111567878776507
Q ss_pred ----------------------------CCHHHCCCCCCCEEEECCCCCCC-----------------CCCCCCC--CCC
Q ss_conf ----------------------------95000168755646620777889-----------------9741027--898
Q 003730 122 ----------------------------IPKEIGNIKSLELLLLNGNELTG-----------------SLPEELG--YLP 154 (799)
Q Consensus 122 ----------------------------~p~~l~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~ 154 (799)
+|..|+++++|++|+|++|++++ .+|..+. +++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred CCCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 33243222354423120405666761521188756999878979688678874653223322222244587444025599
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCCCCCC-------CCCCCEEECCCCCCCCCCCC--CCC
Q ss_conf 77636512454679977113788887879846898-889-99822699-------99886786547868788992--489
Q 003730 155 KLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSR-------LPSLVHMLLDNNNLTGYLPP--ELS 223 (799)
Q Consensus 155 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~-------l~~L~~L~L~~N~l~~~~p~--~l~ 223 (799)
+|+.|+|++|.+.+.+|..|.++++|+.|+|++|+ +++ .+|..++. +++|+.|++++|+++ .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHH
T ss_conf 9778987189887527387737999899989689876566461778752330155688319982289477-618723551
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCC---CCC
Q ss_conf 9999968956477578988850012899987999005889668997789998-648984367687889998876---785
Q 003730 224 ELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPN-LGYLDLSSNQLNGSIPPGRLS---LNI 299 (799)
Q Consensus 224 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~-L~~L~ls~N~l~~~~p~~~~~---~~L 299 (799)
.+++|+.|+|++|.+. .+| .+..+++|+.|+|++|.++..+..+..+++ |+.|++++|.++ .+|..... .+|
T Consensus 571 ~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred CCCCCCEEECCCCCCC--CCH-HHCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCC
T ss_conf 5898898989799825--621-2247985007987187125035877525114989998499787-47644522556777
Q ss_pred CEEECCCCCCCCCCCHHC---C--CCCCCCEEECCCCCCCCCCCCCHH-HHCCCCCCCCCEEECCCCCCCCCCCCCC-CC
Q ss_conf 989843872899864104---7--998786784614428888997502-0012475654328714876889888888-89
Q 003730 300 TTIKLSNNKLTGTIPSNF---S--GLPRLQRLFIANNSLSGSIPSSIW-QSRTLNATETFILDFQNNNLTNISGSFN-IP 372 (799)
Q Consensus 300 ~~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~~~l~~L~l~~N~l~~~~~~~~-~~ 372 (799)
+.|+|++|++++.+|... . .+++|+.|++++|.++ .+|..++ .+. +|+.|++++|.++.+|.... ..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~-----~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS-----PISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC-----CCSEEECCSCCCSCCCTTSSSCT
T ss_pred CEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCC-----CCCEEECCCCCCCCCCHHHHCCC
T ss_conf 8897708847886432000000135797688983199688-65978871389-----88999898996885496784555
Q ss_pred --------CCCEEEECCCCCC
Q ss_conf --------8615641389632
Q 003730 373 --------PNVTVRLRGNPFC 385 (799)
Q Consensus 373 --------~l~~l~l~~N~~~ 385 (799)
.+..|+|.+|.+.
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC
T ss_pred CCCCCCCCCCCEEECCCCCCC
T ss_conf 334321487158988899786
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=343.42 Aligned_cols=337 Identities=21% Similarity=0.287 Sum_probs=279.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCC---CEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 99988999999999865699999--------98999999999999---40130589999982138799915886753379
Q 003730 31 ITDPIEVSALRSIKKSLVDDYSK--------LSNWNRGDPCTSNW---TGVLCFNTTMDDGYLHLRELQLLNLNLSGNLS 99 (799)
Q Consensus 31 ~~~~~e~~~L~~~k~~~~~~~~~--------l~~W~~~~~C~~~w---~gv~C~~~~~~~~~~~l~~L~l~~~~l~g~~~ 99 (799)
.....|+.||..+++++.++... ..+|+...+|| .| +||+|+.. .+++.|+|++++++|.+|
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c-~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD-MWGAQPGVSLNSN------GRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG-GTTCCTTEEECTT------CCEEEEECTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEECCC------CCEEEEEECCCCCCCCCC
T ss_conf 667788999999999758997454776776578877799800-0147798487678------978899842766577288
Q ss_pred CCCCCCCCCCEEECCCCC--------------------------------------------------------------
Q ss_conf 674799976499822898--------------------------------------------------------------
Q 003730 100 PEIGRLSYLTILDFMWNK-------------------------------------------------------------- 117 (799)
Q Consensus 100 ~~l~~l~~L~~L~Ls~N~-------------------------------------------------------------- 117 (799)
+.+++|++|++|+|++|.
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 57856845118987688512377433453235673388888887657775541170666778877776427554654101
Q ss_pred ----------------CCCCCCHHHCCCCCCCEEEECCCCCCCC-----------------CCCCCC--CCCCCCEEECC
Q ss_conf ----------------7778950001687556466207778899-----------------741027--89877636512
Q 003730 118 ----------------ISGSIPKEIGNIKSLELLLLNGNELTGS-----------------LPEELG--YLPKLDRIQID 162 (799)
Q Consensus 118 ----------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls 162 (799)
+++ +|..|+++++|++|+|++|++++. +|..+. ++++|++|+++
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred CCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEC
T ss_conf 3344213001013677750-787772564787898868823664232212222210010248632200446878889804
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCC--CCCCCCCCCEEE
Q ss_conf 454679977113788887879846898-889-998226999------9886786547868788992--489999996895
Q 003730 163 QNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSRL------PSLVHMLLDNNNLTGYLPP--ELSELPKLLILQ 232 (799)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~ 232 (799)
+|.+.+.+|..|.++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|+.|+
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEE
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEE
T ss_conf 8857762838883499978897847988766533578875430465788888989799377-667655542578889896
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCC---CCCCEEECCCCC
Q ss_conf 6477578988850012899987999005889668997789998-648984367687889998876---785989843872
Q 003730 233 LDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPN-LGYLDLSSNQLNGSIPPGRLS---LNITTIKLSNNK 308 (799)
Q Consensus 233 L~~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~-L~~L~ls~N~l~~~~p~~~~~---~~L~~L~Ls~N~ 308 (799)
+++|.+.| .+| .+..+++|+.|++++|.++..+..+..+++ |+.|++++|.++ .+|..... .+|+.|++++|+
T Consensus 337 L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 337 CLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCCCCC-CHH-HHCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCC
T ss_conf 90880705-166-6478898898989899403033756510236868985298275-44665533345766889774885
Q ss_pred CCCCCCHHCC-------CCCCCCEEECCCCCCCCCCCCCHHH-HCCCCCCCCCEEECCCCCCCCCCCCCC--CC------
Q ss_conf 8998641047-------9987867846144288889975020-012475654328714876889888888--89------
Q 003730 309 LTGTIPSNFS-------GLPRLQRLFIANNSLSGSIPSSIWQ-SRTLNATETFILDFQNNNLTNISGSFN--IP------ 372 (799)
Q Consensus 309 l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~~~l~~L~l~~N~l~~~~~~~~--~~------ 372 (799)
+++.+|..+. .+++|+.|++++|.++ .+|..++. +.. ++.|++++|.++.+|.... ..
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~-----L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP-----LSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC-----CSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCC-----CCEEECCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 788652442002201125898888977279668-678788715898-----89898979978873978840440012214
Q ss_pred -CCCEEEECCCCCC
Q ss_conf -8615641389632
Q 003730 373 -PNVTVRLRGNPFC 385 (799)
Q Consensus 373 -~l~~l~l~~N~~~ 385 (799)
.+..+++.+|.+.
T Consensus 488 ~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 488 YLLTSIDLRFNKLT 501 (636)
T ss_dssp GGCCEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
T ss_conf 77338989699388
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=1.00 E-value=1 Score=327.17 Aligned_cols=281 Identities=30% Similarity=0.511 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCC--CCCCCCCCCCC
Q ss_conf 999889999999998656999999899999-999999940130589999982138799915886753--37967479997
Q 003730 31 ITDPIEVSALRSIKKSLVDDYSKLSNWNRG-DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSG--NLSPEIGRLSY 107 (799)
Q Consensus 31 ~~~~~e~~~L~~~k~~~~~~~~~l~~W~~~-~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~g--~~~~~l~~l~~ 107 (799)
.|.++|+.||++||+++.++. .+.+|..+ ++|.|.|.||.|+..+ ...+++.|+++++++++ .+|..+.++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCEEECCCC---CCCEEEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf 889899999999998667962-0247778899776878625857898---776488998889974687656965747888
Q ss_pred CCEEECCC-CCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 64998228-98777895000168755646620777889974102789877636512454679977113788887879846
Q 003730 108 LTILDFMW-NKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (799)
Q Consensus 108 L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 186 (799)
|++|+|++ |.+.+.+|..|.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 88632788886366589668467899979896884677489788378988989697783577278678459887868894
Q ss_pred CCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 8988899982269999-886786547868788992489999996895647757898885001289998799900588966
Q 003730 187 NNSISGQIPPELSRLP-SLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (799)
Q Consensus 187 ~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (799)
+|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|.+.+ ..|..+..+++|+.|++++|.+++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCCCCCCCCHHHHHHHHCCCEEECCCCEEECCCCHHHHCCC-CCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCEEE
T ss_conf 88445818778863453185998859862152776886881-3689791784658-377777467888789897772142
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 899778999864898436768788999887678598984387289986410479987867846144288889975
Q 003730 266 PMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSS 340 (799)
Q Consensus 266 ~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 340 (799)
.++.+..+++|+.| ++++|++++.+|..+..+++|+.|++++|++++.+|..
T Consensus 236 ~~~~~~~l~~L~~L-----------------------~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 236 DLGKVGLSKNLNGL-----------------------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp BGGGCCCCTTCCEE-----------------------ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ECCCCCCCCCCCEE-----------------------ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 25863446878989-----------------------89288216848757866847898988688330517988
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=325.06 Aligned_cols=295 Identities=27% Similarity=0.375 Sum_probs=209.7
Q ss_pred CCCEEEEEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHH-CCCCCCCEEEECCCCCCCCCCCC---CCCC
Q ss_conf 821387999158867533796--74799976499822898777895000-16875564662077788997410---2789
Q 003730 80 GYLHLRELQLLNLNLSGNLSP--EIGRLSYLTILDFMWNKISGSIPKEI-GNIKSLELLLLNGNELTGSLPEE---LGYL 153 (799)
Q Consensus 80 ~~~~l~~L~l~~~~l~g~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~---~~~l 153 (799)
...+++.|++++|.++|.+|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|++++..|.. +.++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
T ss_conf 57889989898985787078967872788999898968826774797785638899989897983588587155664358
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 87763651245467997711378888787984689888999822699998867865478687889924899999968956
Q 003730 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQL 233 (799)
Q Consensus 154 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 233 (799)
++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|. ++.+++|++|++++|++++.+|..+..+++|+.|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 9889898978803465784--5478689898928827887711-126999998979488587816577744888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCC-CCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCC
Q ss_conf 477578988850012899987999005889668997-789-9986489843676878899988-7678598984387289
Q 003730 234 DNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSR-IPNLGYLDLSSNQLNGSIPPGR-LSLNITTIKLSNNKLT 310 (799)
Q Consensus 234 ~~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~-l~~L~~L~ls~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~ 310 (799)
++|.+.+ .+|.. .+++|+.|++++|.+++.+|. +.. +++|+.|++++|.+++.+|... ...+|+.|++++|+++
T Consensus 255 s~n~l~~-~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 255 SSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CSSCCEE-SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCCCCC-CCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 8886657-16724--36878989791785577258888844686889989689677842367755877667789788525
Q ss_pred CCCCHH-CCCCCCCCEEECCCCCCCCCCCCCHHHHC-CCCCCCCCEEECCCCCCCC-CCCCC-C--CCCCCEEEECCCCC
Q ss_conf 986410-47998786784614428888997502001-2475654328714876889-88888-8--89861564138963
Q 003730 311 GTIPSN-FSGLPRLQRLFIANNSLSGSIPSSIWQSR-TLNATETFILDFQNNNLTN-ISGSF-N--IPPNVTVRLRGNPF 384 (799)
Q Consensus 311 ~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~~~l~~L~l~~N~l~~-~~~~~-~--~~~l~~l~l~~N~~ 384 (799)
+.+|.. +..+++|+.|++++|.+++.+|..+..+. .|+ .|++++|.+++ ++..+ . .+.+..+++.+|.+
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~-----~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL-----TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS-----EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCC-----EEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC
T ss_conf 7379788724888878848478437623098986322771-----99862787478767666533247761898977846
Q ss_pred C
Q ss_conf 2
Q 003730 385 C 385 (799)
Q Consensus 385 ~ 385 (799)
.
T Consensus 407 ~ 407 (768)
T 3rgz_A 407 T 407 (768)
T ss_dssp E
T ss_pred C
T ss_conf 5
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=306.92 Aligned_cols=326 Identities=22% Similarity=0.239 Sum_probs=286.5
Q ss_pred CCCC--CCCEEEECCCCCC---C-CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEE
Q ss_conf 9999--9940130589999---9-82138799915886753379674799976499822898777895000168755646
Q 003730 62 PCTS--NWTGVLCFNTTMD---D-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELL 135 (799)
Q Consensus 62 ~C~~--~w~gv~C~~~~~~---~-~~~~l~~L~l~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 135 (799)
.|.| .|..|.|....+. . -..+++.|+++++++++..+..|.++++|++|+|++|.+++..|..|.++++|++|
T Consensus 6 ~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 6 RCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEECCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEE
T ss_conf 88577999879838998673787789998389787993645797671589878998899994377085032087368998
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 62077788997410278987763651245467997711378888787984689888999822699998867865478687
Q 003730 136 LLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (799)
Q Consensus 136 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 215 (799)
+|++|+++...+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|+++
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC
T ss_conf 89999687438320258777797889999566379657166435998989999555108400358899998979899586
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC--
Q ss_conf 88992489999996895647757898885001289998799900588966899-778999864898436768788999--
Q 003730 216 GYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPP-- 292 (799)
Q Consensus 216 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~-- 292 (799)
+..+..+..+++|+.|++++|.+.+ ..+..|..+++|+.|++++|.+.+..+ ......+|+.|++++|.++. +|.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 243 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLA 243 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHH
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCE-ECHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCHHH
T ss_conf 1474572226777688699995757-386440467556613588886655568332467632579786993355-49778
Q ss_pred CCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCCCC--C
Q ss_conf 88767859898438728998641047998786784614428888997502001247565432871487688988888--8
Q 003730 293 GRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--N 370 (799)
Q Consensus 293 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~~l~~L~l~~N~l~~~~~~~--~ 370 (799)
.....+|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+..|+ .|++++|.++.++... .
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-----~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR-----VLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC-----EEECCSSCCSCCCGGGBSC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCEECHHHHCCCCCCC-----EEECCCCCCCEECHHHCCC
T ss_conf 42713068628999937846821341552579778989826558988844763589-----8989999576439867578
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 898615641389632256621225
Q 003730 371 IPPNVTVRLRGNPFCLNTNAEQFC 394 (799)
Q Consensus 371 ~~~l~~l~l~~N~~~~~~~~~~~~ 394 (799)
++.+..+++.+|||.|+|....+-
T Consensus 319 l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 319 VGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp GGGCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 766678985699855766507587
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=1.00 E-value=1 Score=306.67 Aligned_cols=324 Identities=17% Similarity=0.221 Sum_probs=272.5
Q ss_pred CCCCCCCCEEEECCCCCC---CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEE
Q ss_conf 999999940130589999---98213879991588675337967479997649982289877789-50001687556466
Q 003730 61 DPCTSNWTGVLCFNTTMD---DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI-PKEIGNIKSLELLL 136 (799)
Q Consensus 61 ~~C~~~w~gv~C~~~~~~---~~~~~l~~L~l~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 136 (799)
..|.|.+..|.|...++. .-..+++.|+++++.+++..+..+.++++|++|+|++|.+.+.+ +..|.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCEEE
T ss_conf 40488756347677786547888875677980688357478657504765557887688544267845133665578772
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCC
Q ss_conf 2077788997410278987763651245467997711--378888787984689888999822-6999988678654786
Q 003730 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKS--FANLNKTRHFHMNNNSISGQIPPE-LSRLPSLVHMLLDNNN 213 (799)
Q Consensus 137 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~ 213 (799)
|++|++++..|..|..+++|++|++++|.+++..+.. |..+++|++|++++|.+.+..|.. +..+++|++|++++|+
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 89885376586452575348897687888775544702126812089987999966754800200777746678677786
Q ss_pred CCCCCCCCCCCC----------------------------------CCCCEEECCCCCCCCCCCCCCCC-----------
Q ss_conf 878899248999----------------------------------99968956477578988850012-----------
Q 003730 214 LTGYLPPELSEL----------------------------------PKLLILQLDNNNFEGTTIPASYS----------- 248 (799)
Q Consensus 214 l~~~~p~~l~~l----------------------------------~~L~~L~L~~N~l~~~~~p~~~~----------- 248 (799)
+++..+..+..+ ++|+.|++++|.+.+ ..|..+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEE
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCC-CCHHHHHCCCCCCCEEEE
T ss_conf 5655755631014200010245567242253110463213431346501268567886653-230334212355635567
Q ss_pred ----------------------------CCCCCCEEEEECCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCC-CCCC
Q ss_conf ----------------------------899987999005889668997-7899986489843676878899988-7678
Q 003730 249 ----------------------------NMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGR-LSLN 298 (799)
Q Consensus 249 ----------------------------~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~-~~~~ 298 (799)
..++|+.|++++|.+++.+|. +..+++|+.|++++|.+.+..|... ...+
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred EECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 50344343232210220367523334434567328984376201346545054777788889988304568667548656
Q ss_pred CCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCE
Q ss_conf 59898438728998641047998786784614428888997502001247565432871487688988888--8898615
Q 003730 299 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVT 376 (799)
Q Consensus 299 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~~l~~L~l~~N~l~~~~~~~--~~~~l~~ 376 (799)
|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..+..+..| +.|++++|+++.++... .++.+..
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL-----KELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----CEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCC-----CEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 8789898986687496672673358789898996352596562466566-----48989999366479767335776558
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 64138963225662
Q 003730 377 VRLRGNPFCLNTNA 390 (799)
Q Consensus 377 l~l~~N~~~~~~~~ 390 (799)
+++.+|||.|+|+.
T Consensus 400 L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 400 IWLHTNPWDCSCPR 413 (455)
T ss_dssp EECCSSCBCCCTTT
T ss_pred EECCCCCCCCCCCC
T ss_conf 98069980467770
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=294.15 Aligned_cols=201 Identities=21% Similarity=0.214 Sum_probs=155.9
Q ss_pred CCCCCC--CCEEEECCCCCC---C-CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCE
Q ss_conf 999999--940130589999---9-8213879991588675337967479997649982289877789500016875564
Q 003730 61 DPCTSN--WTGVLCFNTTMD---D-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (799)
Q Consensus 61 ~~C~~~--w~gv~C~~~~~~---~-~~~~l~~L~l~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 134 (799)
+||.|. -..|.|.+..+. . -..+++.|+++++.+++..+..|.++++|++|+|++|.+++..|..|.++++|++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCE
T ss_conf 77532178970574688845189888887678878889757737545557766748868877366439777306010688
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCC
Q ss_conf 6620777889974102789877636512454679977113788887879846898889-998226999988678654786
Q 003730 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNN 213 (799)
Q Consensus 135 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~ 213 (799)
|++++|++++..|..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|+
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCC
T ss_conf 67879856304852207865378887037755544511348988779896878852325306867326777788766885
Q ss_pred CCCCCCCCCCCCCCCC----EEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 8788992489999996----8956477578988850012899987999005889
Q 003730 214 LTGYLPPELSELPKLL----ILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSL 263 (799)
Q Consensus 214 l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l 263 (799)
+++..+..+..+++|+ .|++++|.+.+ ++.......+|+.|++++|.+
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~--~~~~~~~~~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDF--IQDQAFQGIKLHELTLRGNFN 216 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCE--ECTTTTTTCEEEEEEEESCCS
T ss_pred CEECCHHHHHHHHCCCCCCCEEECCCCCCCE--ECCCCCCCCEEEEEECCCCCC
T ss_conf 3105733412120342002430046897532--571105676043352467856
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=292.56 Aligned_cols=332 Identities=19% Similarity=0.166 Sum_probs=258.5
Q ss_pred CCCCCCCCCCCCCCCC---CCEEEECCC----C--C-----CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 9999899999999999---940130589----9--9-----998213879991588675337967479997649982289
Q 003730 51 YSKLSNWNRGDPCTSN---WTGVLCFNT----T--M-----DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWN 116 (799)
Q Consensus 51 ~~~l~~W~~~~~C~~~---w~gv~C~~~----~--~-----~~~~~~l~~L~l~~~~l~g~~~~~l~~l~~L~~L~Ls~N 116 (799)
...+++|..+.+|+.. |.++.|... + . .-...+++.+++.++.+....+..+..+++|++|+|++|
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n 85 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 32256789998576557675068547603246666656754346788618983389778769898802899768989899
Q ss_pred CCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 87778950001687556466207778899741027898776365124546799771137888878798468988899982
Q 003730 117 KISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPP 196 (799)
Q Consensus 117 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 196 (799)
.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCHH
T ss_conf 79998957860789888898979908998978875899998897438999977878764698878898468968987755
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---------------CCCCCCCCEEEEECC
Q ss_conf 26999988678654786878899248999999689564775789888500---------------128999879990058
Q 003730 197 ELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPAS---------------YSNMSKLLKLSLRNC 261 (799)
Q Consensus 197 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~p~~---------------~~~l~~L~~L~Ls~N 261 (799)
.|..+++|++|++++|.+++.. +..+++|+.|++++|.+.+...|.. ....++|+.|+|++|
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS
T ss_pred HHHCCCCCCEEECCCCCCCCCC---HHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 5522875737889688788768---5660146654201474433357730420344678556556655787888989899
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 896689977899986489843676878899988-7678598984387289986410479987867846144288889975
Q 003730 262 SLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGR-LSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSS 340 (799)
Q Consensus 262 ~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 340 (799)
.+++. +.+..+++|+.|++++|.+.+.+|..+ ...+|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..
T Consensus 243 ~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 243 NLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp CCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred CCCCC-HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCC-CCCCC
T ss_conf 99997-566258988887897996588797785075588888997998887-7743246998838989899888-55821
Q ss_pred HHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 020012475654328714876889888888898615641389632256621225
Q 003730 341 IWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAEQFC 394 (799)
Q Consensus 341 ~~~l~~L~~~~l~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~~~~~~~~~~ 394 (799)
+..+..| +.|++++|.++.++ ...++.+..+++.+|||.|+|....+.
T Consensus 320 ~~~l~~L-----~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 320 QPQFDRL-----ENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp HHHHTTC-----SEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCCCCC-----CEEECCCCCCCCCC-HHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 0148988-----98989899789869-201399898992398998804999999
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=291.95 Aligned_cols=319 Identities=19% Similarity=0.179 Sum_probs=258.1
Q ss_pred CCCCCCC--CCEEEECCCCCCC----CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCC
Q ss_conf 9999999--9401305899999----821387999158867533796747999764998228987778950001687556
Q 003730 60 GDPCTSN--WTGVLCFNTTMDD----GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLE 133 (799)
Q Consensus 60 ~~~C~~~--w~gv~C~~~~~~~----~~~~l~~L~l~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 133 (799)
...|.|. +..+.|...+... -..+++.|+++++.+++..+..|.++++|++|+|++|.+.+..|..|.++++|+
T Consensus 5 ~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (606)
T 3t6q_A 5 DQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84 (606)
T ss_dssp -CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCC
T ss_conf 68601236872377777980628677898675898158734717966725676652897889835524851136843367
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 46620777889974102789877636512454679977113788887879846898889998226999988678654786
Q 003730 134 LLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN 213 (799)
Q Consensus 134 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 213 (799)
+|++++|++++..|..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|+
T Consensus 85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 64488985654586552344215376521267665781012237822389887983411476545687656877765684
Q ss_pred CCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCCC-----------------------------------------
Q ss_conf 8788992489999996--895647757898885001289-----------------------------------------
Q 003730 214 LTGYLPPELSELPKLL--ILQLDNNNFEGTTIPASYSNM----------------------------------------- 250 (799)
Q Consensus 214 l~~~~p~~l~~l~~L~--~L~L~~N~l~~~~~p~~~~~l----------------------------------------- 250 (799)
+++..+..+..+++|+ .|++++|.+.+ ..|..+...
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred CCCCCHHHHHHHCCCCEEEEECCCCCCCC-CCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCC
T ss_conf 45549656332215640389667981475-48667300100135567726677776513356442200201102641226
Q ss_pred ----------CCCCEEEEECCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCHHCC
Q ss_conf ----------9987999005889668997-789998648984367687889998-8767859898438728998641047
Q 003730 251 ----------SKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPG-RLSLNITTIKLSNNKLTGTIPSNFS 318 (799)
Q Consensus 251 ----------~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~L~Ls~N~l~~~~p~~~~ 318 (799)
.+|+.|++++|.+++..+. +..+++|+.|++++|.++ .+|.. ....+|+.|++++|++++..|..+.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred CHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 866743032075059994457658557777445667888956288267-7782141654688897716876867602330
Q ss_pred CCCCCCEEECCCCCCCCCCCCC-HHHHCCCCCCCCCEEECCCCCCCCCC---CCC-CCCCCCEEEECCCCCC
Q ss_conf 9987867846144288889975-02001247565432871487688988---888-8898615641389632
Q 003730 319 GLPRLQRLFIANNSLSGSIPSS-IWQSRTLNATETFILDFQNNNLTNIS---GSF-NIPPNVTVRLRGNPFC 385 (799)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~~~l~~L~l~~N~l~~~~---~~~-~~~~l~~l~l~~N~~~ 385 (799)
.+++|+.|++++|.+.+.+|.. +..+. +++.|++++|.++.+. ..+ .++.+..+++.+|.+.
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLE-----NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCT-----TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCC-----CCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
T ss_conf 1576898889899744434624550667-----589887889966645675221056788898989899677
Done!