Query 003731
Match_columns 799
No_of_seqs 320 out of 820
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 18:18:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003731.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1779-1782//hhsearch_pdb/003731hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 215.0 14.7 116 106-221 5-122 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 130.6 12.3 97 112-218 46-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 99.6 10.9 94 112-216 8-101 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 41.1 6.6 92 112-204 18-123 (404)
5 2ktr_A Sequestosome-1; autopha 1.0 1 1 31.0 4.8 61 676-743 17-94 (117)
6 1vd2_A Protein kinase C, IOTA 1.0 1 1 29.3 7.2 56 677-739 4-59 (89)
7 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 28.4 5.1 62 677-744 3-80 (102)
8 1oey_J P40-PHOX, neutrophil cy 1.0 1 1 27.2 5.4 60 688-773 17-80 (107)
9 1wmh_B Partitioning defective- 1.0 1 1 26.7 6.6 70 678-754 5-76 (86)
10 1q1o_A Cell division control p 1.0 1 1 23.4 7.1 74 678-753 4-85 (98)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=214.99 Aligned_cols=116 Identities=28% Similarity=0.445 Sum_probs=107.1
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCH
Q ss_conf 99999830189854747799889225504247430999988999997089997469973898999808997026424620
Q 003731 106 IPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS 185 (799)
Q Consensus 106 ~~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs 185 (799)
...+....+|+|+||+|||++++||+||+++|+.|||+++..+.+++++|.++|.+|++|+|||+||+++++|+|++||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHH
T ss_conf 78999862499998557718977799678999966886544457883899999589999999999978999638837748
Q ss_pred HHHCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCCC
Q ss_conf 02013587779889999825--8838998983589998
Q 003731 186 VFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRAIRPPT 221 (799)
Q Consensus 186 ~FV~~K~L~aGD~VvF~R~~--~g~L~vGIRRa~r~~~ 221 (799)
.||++|+|++||.|+|++.+ .+.|+|++||+.++..
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~ 122 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 122 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 87787199889899999953899689999998999986
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=130.59 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=85.4
Q ss_pred CEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 30189854747799889225504247430999988999997089997469973898999808997026424620020135
Q 003731 112 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 191 (799)
Q Consensus 112 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FV~~K 191 (799)
..+|.|+||+||+.+...+.||+++|+.+||.. .+.+.+.|. |+.|.|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~-------~~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI-------SGFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC-------CSEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECCHHCCCCCEEEECHHHHHHHCCCC-------CEEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHHC
T ss_conf 998999978566189867990999999748888-------837999979-9478989999589--078777638988875
Q ss_pred CCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 8777988999982588--38998983589
Q 003731 192 RLVAGDSVLFIWNEKN--QLLLGIRRAIR 218 (799)
Q Consensus 192 ~L~aGD~VvF~R~~~g--~L~vGIRRa~r 218 (799)
+|++||.++|...++. .+.|.|-|+.-
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 99989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=99.60 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=80.8
Q ss_pred CEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 30189854747799889225504247430999988999997089997469973898999808997026424620020135
Q 003731 112 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 191 (799)
Q Consensus 112 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FV~~K 191 (799)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|++++..+. ++..|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCC--CCEEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHHC
T ss_conf 9878999877775--531888999998648669-------9889999799999999999989--9499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 8777988999982588389989835
Q 003731 192 RLVAGDSVLFIWNEKNQLLLGIRRA 216 (799)
Q Consensus 192 ~L~aGD~VvF~R~~~g~L~vGIRRa 216 (799)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECC
T ss_conf 9998989999985897699999789
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=41.10 Aligned_cols=92 Identities=23% Similarity=0.300 Sum_probs=66.2
Q ss_pred CEEEEEECCCCCCCCC----CCEEECHHHHHHHCCCCC-CCCCCCCCEEEE--EECCCCEEEEEEEEEC------CCCCE
Q ss_conf 3018985474779988----922550424743099998-899999708999--7469973898999808------99702
Q 003731 112 TNYFCKTLTASDTSTH----GGFSVPRRAAEKVFPSLD-FSLQPPAQELIA--RDLHDVEWKFRHIFRG------QPKRH 178 (799)
Q Consensus 112 ~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~fP~Ld-~~~~~p~q~L~~--~Dl~G~~W~Fr~iyrg------~prrh 178 (799)
...|+|.|++.|++.. ++|.+|+......||.|+ .....|.+.+.+ -|-..-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred CHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCE
T ss_conf 04135772244578877764445785689998635489865567763157784168884277899983264668988745
Q ss_pred EECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 6424620-0201358777988999982
Q 003731 179 LLTTGWS-VFVSAKRLVAGDSVLFIWN 204 (799)
Q Consensus 179 lLTtGWs-~FV~~K~L~aGD~VvF~R~ 204 (799)
.||. |. .+.-.....+||.++|.+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 8840-2789865466888788999872
No 5
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=30.97 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCCCEEEEEEECC-----CCCEEECCC-----------CCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 9852068994216-----410122058-----------98895899999987636-777457999997169888078966
Q 003731 676 TPTRTFVKVYKSG-----SVGRSLDIS-----------RFSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDV 738 (799)
Q Consensus 676 ~~~~~~vKV~m~G-----~igRkvDL~-----------~~~sY~eL~~~L~~MF~-~~g~L~d~~~s~w~lvY~D~EgD~ 738 (799)
.....-||++..| .--|..-|. .-.+|++|+..+.++|. +. ...|++.|.|.|||+
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDl 89 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDL 89 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCE
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-------CCCEEEEEECCCCCE
T ss_conf 4452899999806777887279988426777431124567779999999999734558-------983899999899998
Q ss_pred EECCC
Q ss_conf 86278
Q 003731 739 LLLGD 743 (799)
Q Consensus 739 mLvGD 743 (799)
.-...
T Consensus 90 ItISs 94 (117)
T 2ktr_A 90 VAFSS 94 (117)
T ss_dssp EEECS
T ss_pred EEECC
T ss_conf 97638
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=29.26 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=42.6
Q ss_pred CCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 852068994216410122058988958999999876367774579999971698880789668
Q 003731 677 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVL 739 (799)
Q Consensus 677 ~~~~~vKV~m~G~igRkvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~w~lvY~D~EgD~m 739 (799)
+...-||++-.|. -|.+.+..--+|++|..++.++|.+. ....+++.|.|.|||+.
T Consensus 4 ~~~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 4 GSQVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp SSCEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCE
T ss_pred CCEEEEEEEECCE-EEEEECCCCCCHHHHHHHHHHHHCCC------CCCEEEEEEECCCCCCC
T ss_conf 8718999994785-99998799989999999999996889------89827999998997950
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=28.36 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=42.1
Q ss_pred CCCEEEEEEECC-----CCCEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 852068994216-----4101220589-----------889589999998763677745799999716988807896686
Q 003731 677 PTRTFVKVYKSG-----SVGRSLDISR-----------FSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLL 740 (799)
Q Consensus 677 ~~~~~vKV~m~G-----~igRkvDL~~-----------~~sY~eL~~~L~~MF~~~g~L~d~~~s~w~lvY~D~EgD~mL 740 (799)
....-||+|..| .--|..-|.. ..+|++|+..+.++|.. |. ...+++.|.|.|||+.-
T Consensus 3 ~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l~---~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 3 HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---LR---PGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---SC---SSCEEEEEECTTCCEEE
T ss_pred CCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CC---CCCEEEEEECCCCCEEE
T ss_conf 7469999998167777872699883367775422244666699999999997544---57---98389999989999897
Q ss_pred CCCC
Q ss_conf 2785
Q 003731 741 LGDD 744 (799)
Q Consensus 741 vGD~ 744 (799)
..++
T Consensus 77 iSsD 80 (102)
T 2kkc_A 77 FSSD 80 (102)
T ss_dssp ECSH
T ss_pred ECCH
T ss_conf 6488
No 8
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=27.24 Aligned_cols=60 Identities=30% Similarity=0.325 Sum_probs=48.7
Q ss_pred CCCCEEE----CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCHHHHHCCEEEEEEECHHH
Q ss_conf 6410122----058988958999999876367774579999971698880789668627854566750300879919565
Q 003731 688 GSVGRSL----DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPED 763 (799)
Q Consensus 688 G~igRkv----DL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~w~lvY~D~EgD~mLvGD~PW~~F~~~vkri~I~~~~e 763 (799)
|...|.| ||+.--.|.+|..-..+-|..+ +-.|-|.|.|||+ |+|+..++
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDL-----------------IrilddeD 70 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDL-----------------VRLLSDED 70 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCE-----------------EECCSHHH
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC---------CEEEEEECCCCCE-----------------EEECCHHH
T ss_conf 734203887156466977899999999873410---------0466303688998-----------------99816577
Q ss_pred HHCCCCCCCC
Q ss_conf 5111422344
Q 003731 764 VQKMGEQGVE 773 (799)
Q Consensus 764 ~~~m~~~~~~ 773 (799)
+.-|..++..
T Consensus 71 v~lmi~~sr~ 80 (107)
T 1oey_J 71 VALMVRQARG 80 (107)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHC
T ss_conf 8999999613
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=26.74 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=50.7
Q ss_pred CCEEEEEEECCCCCE-EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEECCC-CCHHHHHCCEE
Q ss_conf 520689942164101-220589889589999998763677745799999716988807896686278-54566750300
Q 003731 678 TRTFVKVYKSGSVGR-SLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD-DPWEAFVSNVW 754 (799)
Q Consensus 678 ~~~~vKV~m~G~igR-kvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~w~lvY~D~EgD~mLvGD-~PW~~F~~~vk 754 (799)
+-.-||.+-++.+=| ++|-..-.+|++|..-++++|.+. ...+++.|.|.+||++-.-+ +-..+-+.+++
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred CEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC-------CCCEEEEEECCCCCEEEECCHHHHHHHHHHCC
T ss_conf 8799986338804676726887878899999999975789-------98789999889999761458899999997288
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=23.40 Aligned_cols=74 Identities=12% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCEEEEEEECC-----CCC--EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEECC-CCCHHHH
Q ss_conf 52068994216-----410--122058988958999999876367774579999971698880789668627-8545667
Q 003731 678 TRTFVKVYKSG-----SVG--RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG-DDPWEAF 749 (799)
Q Consensus 678 ~~~~vKV~m~G-----~ig--RkvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~w~lvY~D~EgD~mLvG-D~PW~~F 749 (799)
+..-|||+-.. +++ |.|=+..--+|++|...+.+-|++. ...+- +...++-|+|.|||+...+ |+=|++-
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~i-~~~~klkYkDEdGD~Vtl~sddDl~~A 81 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNNI-SPITKIKYQDEDGDFVVLGSDEDWNVA 81 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSCC-CCCCCEEEECSSSCEEEECSHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC-CCCCC-CCEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf 5189999935765666668679999669998999999999997678-65454-650479999699998877288999999
Q ss_pred HCCE
Q ss_conf 5030
Q 003731 750 VSNV 753 (799)
Q Consensus 750 ~~~v 753 (799)
+.++
T Consensus 82 ~e~~ 85 (98)
T 1q1o_A 82 KEML 85 (98)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9997
Done!