BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003732
(799 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Query: 433 IRNLFSAKTIHE---YSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVG 489
I +LF A +++ + L+ ++ + L ++ G+ +PAG FVP +IG+ +GRL G
Sbjct: 301 INDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYG 360
Query: 490 MFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLIS 549
+ + I G+YA++GAA+F G R +S VI+ E+T ++ L +++ +L++
Sbjct: 361 ELMRVVFGN-AIVPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLA 418
Query: 550 KAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKE 588
VG+AF+ LYE ++ +P + + + +MTA+E
Sbjct: 419 VIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTARE 457
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 21/199 (10%)
Query: 78 FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYI 137
F L+G+ L ++++V + ++ FAG+++Y++ + L S +
Sbjct: 13 FLTLLGVTAALFIFAVDLAVHGLEELRMKISR---LAGRFAGYILYVVSGVALCLLSTFW 69
Query: 138 ITKFAPAAAGSGIPEIKGYLNGV--DIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLV 195
+ A GSG+P++K L+G + L R L K G I ++GGGL +G EGP V
Sbjct: 70 CAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNV 129
Query: 196 HTGACIASLLGQGGSTKYHLRYRWLQVFR---SDRD-RRDLXXXXXXXXXXXXXXXXXXX 251
H IA H YR L VF+ +DR R
Sbjct: 130 HIACIIA-----------HQFYR-LGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGG 177
Query: 252 XLFALEEVTSWWRSQLMWR 270
L+++E + S++ Q W+
Sbjct: 178 VLYSIETIASFYLVQAFWK 196
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 20/209 (9%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G TGL V +V + + ++ L +IL + +L +
Sbjct: 37 FMAAVVGTLTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFIL-SALLAMVGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ KFAP A GSGIPEI+G L ++ + +R L K G +G++G G+ LG+EGP V
Sbjct: 96 LVRKFAPEAGGSGIPEIEGALE--ELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQ 153
Query: 197 TGACIASLLGQGGSTKYHLRYRWLQVF--RSDRDRRDLXXXXXXXXXXXXXXXXXXXXLF 254
G + ++ L VF RS R L LF
Sbjct: 154 IGGNLGRMV--------------LDVFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILF 199
Query: 255 ALEEVTSWWRSQLM-WRVFFTSAIVAVVV 282
+EE+ +R L+ + FT I++ +V
Sbjct: 200 IIEEMRPQFRYNLISIKAVFTGVIMSSIV 228
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL +S LL + ++ F P G F P + +G+ G GM
Sbjct: 318 NLIPIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAV 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIMLVL 546
+ + ++E GT+A+ G + + S+R ++ V+++E+T+N + LP+I+ L
Sbjct: 378 LFPQYHLEAGTFAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCL 430
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 79 ALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYII 138
A+++G+ TG+ +V N W+ L I+ +LV LI+ +V S +++
Sbjct: 35 AIVVGLITGVLGAGFKSAVNNMLQWRSQLA-QILAPIPPLAWLVTALISGGMVALSFWLM 93
Query: 139 TKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTG 198
+FAP +GSGIP+I+G+L G ++ R L K+ G S+G G+ G EGP + G
Sbjct: 94 KRFAPDTSGSGIPQIEGHLEGK--LPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMG 151
Query: 199 ACIASLLG 206
I + G
Sbjct: 152 GSIGQMTG 159
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLK-FLPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + +LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLWLPMII 427
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMG-ALVHTADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMG-ALVHTADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMG-ALVHTADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+ GP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRAGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMG-ALVHTADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMG-ALVHTADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A G+GIPEI+G L D + +R L K FG +G++GGG+ LG++GP V
Sbjct: 96 LVRKYAPEAGGAGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG++GP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG++GP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+ GP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRAGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMG-ALVHTADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVY 136
F A ++G GLAAV + V + +Y V L + +L +
Sbjct: 37 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYF 95
Query: 137 IITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVH 196
++ K+AP A GSGIPEI+G L D + +R L K FG +G++GGG+ LG+EGP V
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 197 TGACIASLL 205
G I ++
Sbjct: 154 IGGNIGRMV 162
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 411
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 57 REEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSY 116
R Q R L + + F A ++G GLAAV + V + +Y
Sbjct: 1 RRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNY 59
Query: 117 FAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIF 176
V L + +L +++ K+AP A GSGIPEI+G L D + +R L K F
Sbjct: 60 PLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFF 117
Query: 177 GSIGSVGGGLALGKEGPLVHTGACIASLL 205
G +G++GGG+ LG+EGP V G I ++
Sbjct: 118 GGLGTLGGGMVLGREGPTVQIGGNIGRMV 146
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 411
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 57 REEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSY 116
R Q R L + + F A ++G GLAAV + V + +Y
Sbjct: 1 RRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNY 59
Query: 117 FAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIF 176
V L + +L +++ K+AP A GSGIPEI+G L D + +R L K F
Sbjct: 60 PLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFF 117
Query: 177 GSIGSVGGGLALGKEGPLVHTGACIASLL 205
G +G++GGG+ LG+EGP V G I ++
Sbjct: 118 GGLGTLGGGMVLGREGPTVQIGGNIGRMV 146
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
NL T +S L+ V ++ F P G F P + +G+ G GM V
Sbjct: 303 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 362
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKF-LPLIM 543
+ + ++E GT+A+ G + L S+R ++ ++++E+T+N + LP+I+
Sbjct: 363 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 412
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 57 REEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSY 116
R Q R L + + F A ++G GLAAV + V + +Y
Sbjct: 2 RRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMG-ALVHTADNY 60
Query: 117 FAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIF 176
V L + +L +++ K+AP A GSGIPEI+G L D + +R L K F
Sbjct: 61 PLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFF 118
Query: 177 GSIGSVGGGLALGKEGPLVHTGACIASLL 205
G +G++GGG+ LG+EGP V G I ++
Sbjct: 119 GGLGTLGGGMVLGREGPTVQIGGNIGRMV 147
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 705 LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
L+ SP+ V + + V ++FR+LGLR V R++G+IT+KD+L
Sbjct: 114 LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT-HNGRLLGIITKKDVL 160
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 711 VVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
V P D+SL K + Q + + +V + ++++GLIT KD++
Sbjct: 169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM 210
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
M + I + + P+ + +L+ +L L +RH+ +V +++G+++++DLL
Sbjct: 1 MSLMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+G + P+P VV E +L + + R + VV +++G+ITR +++
Sbjct: 87 VGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVV 138
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+G + P+P VV E +L + + R + VV +++G+ITR +++
Sbjct: 101 VGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVV 152
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+G PSP VV + +L L + R + VV ++IG++TR +++
Sbjct: 100 VGDLXTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,167,251
Number of Sequences: 62578
Number of extensions: 812936
Number of successful extensions: 1408
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 66
length of query: 799
length of database: 14,973,337
effective HSP length: 107
effective length of query: 692
effective length of database: 8,277,491
effective search space: 5728023772
effective search space used: 5728023772
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)