Query 003732
Match_columns 799
No_of_seqs 471 out of 2702
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 7E-157 1E-161 1267.1 45.3 689 39-755 51-746 (762)
2 KOG0476 Cl- channel CLC-2 and 100.0 1.7E-86 3.7E-91 730.6 28.6 647 58-757 78-859 (931)
3 KOG0475 Cl- channel CLC-3 and 100.0 2.2E-84 4.7E-89 706.1 39.7 589 79-755 58-694 (696)
4 cd03685 ClC_6_like ClC-6-like 100.0 4.1E-77 8.8E-82 675.9 45.2 459 44-576 1-462 (466)
5 PRK01862 putative voltage-gate 100.0 1.1E-74 2.3E-79 677.3 57.1 543 77-757 26-572 (574)
6 cd03684 ClC_3_like ClC-3-like 100.0 6E-68 1.3E-72 598.4 38.5 412 83-573 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 3E-66 6.4E-71 582.1 39.5 415 76-575 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 3.7E-65 7.9E-70 572.1 36.6 407 83-562 1-416 (416)
9 cd01031 EriC ClC chloride chan 100.0 5.1E-58 1.1E-62 514.2 39.0 401 82-566 1-402 (402)
10 PRK01610 putative voltage-gate 100.0 6.6E-58 1.4E-62 512.2 38.8 411 74-568 3-417 (418)
11 PRK05277 chloride channel prot 100.0 5.6E-57 1.2E-61 510.5 42.0 411 77-568 2-417 (438)
12 COG0038 EriC Chloride channel 100.0 6.6E-55 1.4E-59 490.4 39.4 411 76-573 23-436 (443)
13 PF00654 Voltage_CLC: Voltage 100.0 6.1E-55 1.3E-59 481.2 31.7 348 130-554 2-354 (355)
14 cd01034 EriC_like ClC chloride 100.0 3E-54 6.5E-59 481.2 35.1 383 87-562 1-390 (390)
15 cd01033 ClC_like Putative ClC 100.0 5.3E-54 1.2E-58 477.7 36.3 384 83-556 1-386 (388)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.3E-51 2.9E-56 460.3 35.3 383 83-550 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 2.2E-48 4.7E-53 432.0 36.4 376 79-562 2-378 (378)
18 PRK03655 putative ion channel 100.0 1E-45 2.2E-50 411.7 34.8 383 73-553 10-397 (414)
19 COG3448 CBS-domain-containing 99.7 1.6E-16 3.5E-21 160.6 17.6 133 581-758 242-374 (382)
20 cd01034 EriC_like ClC chloride 99.7 6.7E-16 1.4E-20 172.9 19.0 184 73-284 199-382 (390)
21 cd01033 ClC_like Putative ClC 99.7 2.5E-16 5.5E-21 175.8 15.1 183 75-285 204-386 (388)
22 PRK05277 chloride channel prot 99.6 1.7E-15 3.6E-20 172.2 16.0 189 74-284 215-403 (438)
23 COG2524 Predicted transcriptio 99.6 4.7E-15 1E-19 148.0 12.2 123 581-756 169-291 (294)
24 cd00400 Voltage_gated_ClC CLC 99.6 1.1E-14 2.5E-19 162.9 13.0 178 73-276 203-380 (383)
25 PRK01862 putative voltage-gate 99.6 2.1E-14 4.5E-19 169.0 14.8 183 75-284 238-421 (574)
26 PRK10892 D-arabinose 5-phospha 99.5 6.4E-14 1.4E-18 153.6 15.8 147 557-754 169-323 (326)
27 PRK11543 gutQ D-arabinose 5-ph 99.5 8.1E-14 1.8E-18 152.5 16.4 148 557-754 164-318 (321)
28 PRK01610 putative voltage-gate 99.5 5.5E-14 1.2E-18 158.2 14.8 184 74-284 219-403 (418)
29 COG4109 Predicted transcriptio 99.5 1.9E-14 4E-19 149.3 8.5 152 539-760 157-310 (432)
30 cd01031 EriC ClC chloride chan 99.5 4.3E-13 9.4E-18 151.0 15.0 187 73-284 204-390 (402)
31 cd03682 ClC_sycA_like ClC sycA 99.5 5.7E-13 1.2E-17 148.6 15.8 172 73-281 197-370 (378)
32 cd04641 CBS_pair_28 The CBS do 99.4 1.7E-12 3.8E-17 120.2 13.4 117 595-753 3-119 (120)
33 cd04618 CBS_pair_5 The CBS dom 99.4 1.5E-12 3.3E-17 116.6 11.9 94 595-753 3-97 (98)
34 PRK15094 magnesium/cobalt effl 99.4 1E-12 2.2E-17 140.8 11.8 130 581-762 64-195 (292)
35 COG3620 Predicted transcriptio 99.4 1.4E-12 3.1E-17 121.1 10.9 123 582-757 63-185 (187)
36 cd04603 CBS_pair_KefB_assoc Th 99.4 2.9E-12 6.3E-17 117.1 12.9 108 595-753 3-110 (111)
37 cd04619 CBS_pair_6 The CBS dom 99.4 2.9E-12 6.4E-17 117.6 12.9 111 595-753 3-113 (114)
38 PRK07807 inosine 5-monophospha 99.4 2E-12 4.2E-17 146.8 13.1 145 558-758 58-207 (479)
39 TIGR03520 GldE gliding motilit 99.4 3.5E-12 7.7E-17 143.2 13.3 127 581-761 188-316 (408)
40 cd04600 CBS_pair_HPP_assoc Thi 99.3 8.2E-12 1.8E-16 116.1 12.5 121 595-754 4-124 (124)
41 cd04631 CBS_pair_18 The CBS do 99.3 1.1E-11 2.3E-16 115.5 12.6 122 595-754 3-125 (125)
42 cd04639 CBS_pair_26 The CBS do 99.3 1.1E-11 2.4E-16 112.8 12.3 108 595-753 3-110 (111)
43 cd04630 CBS_pair_17 The CBS do 99.3 2.3E-11 4.9E-16 111.6 13.5 110 595-753 3-113 (114)
44 cd04605 CBS_pair_MET2_assoc Th 99.3 2.4E-11 5.2E-16 110.4 13.5 106 595-753 4-109 (110)
45 cd04586 CBS_pair_BON_assoc Thi 99.3 1E-11 2.2E-16 117.6 11.3 125 595-753 4-134 (135)
46 cd04617 CBS_pair_4 The CBS dom 99.3 2.2E-11 4.8E-16 112.5 13.0 110 595-753 3-117 (118)
47 cd04607 CBS_pair_NTP_transfera 99.3 2.9E-11 6.2E-16 110.6 13.2 109 595-753 4-112 (113)
48 cd04593 CBS_pair_EriC_assoc_ba 99.3 2.8E-11 6.1E-16 111.0 13.1 111 595-754 3-115 (115)
49 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.7E-11 3.6E-16 111.3 11.4 104 595-753 4-107 (108)
50 cd04627 CBS_pair_14 The CBS do 99.3 2.5E-11 5.4E-16 113.0 12.9 118 595-752 3-121 (123)
51 cd04608 CBS_pair_PALP_assoc Th 99.3 1.1E-11 2.4E-16 116.0 10.4 111 595-754 4-123 (124)
52 cd04595 CBS_pair_DHH_polyA_Pol 99.3 3.3E-11 7.2E-16 109.5 13.3 106 595-753 4-109 (110)
53 cd04801 CBS_pair_M50_like This 99.3 2.2E-11 4.8E-16 111.6 12.0 108 595-753 3-113 (114)
54 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 2.5E-11 5.5E-16 110.7 12.3 110 595-753 3-113 (114)
55 cd04803 CBS_pair_15 The CBS do 99.3 3.1E-11 6.8E-16 111.8 12.7 119 595-753 3-121 (122)
56 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 4.3E-11 9.4E-16 108.3 13.3 105 595-753 4-108 (109)
57 cd04623 CBS_pair_10 The CBS do 99.3 4.5E-11 9.8E-16 108.8 13.2 110 595-753 3-112 (113)
58 cd04624 CBS_pair_11 The CBS do 99.3 6E-11 1.3E-15 108.1 13.4 109 595-753 3-111 (112)
59 cd04588 CBS_pair_CAP-ED_DUF294 99.3 7E-11 1.5E-15 107.3 13.5 107 595-753 3-109 (110)
60 TIGR00400 mgtE Mg2+ transporte 99.3 1.8E-11 3.8E-16 139.6 11.5 123 582-760 129-256 (449)
61 cd04629 CBS_pair_16 The CBS do 99.3 3.6E-11 7.8E-16 109.8 11.3 111 595-753 3-113 (114)
62 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.9E-11 6.4E-16 137.1 12.8 122 580-758 84-205 (475)
63 cd04614 CBS_pair_1 The CBS dom 99.3 5.5E-11 1.2E-15 105.9 11.9 94 595-754 3-96 (96)
64 cd04590 CBS_pair_CorC_HlyC_ass 99.3 7.1E-11 1.5E-15 107.4 12.9 107 595-753 3-110 (111)
65 PRK07107 inosine 5-monophospha 99.3 4.9E-11 1.1E-15 136.2 14.3 148 557-755 64-219 (502)
66 cd04626 CBS_pair_13 The CBS do 99.3 6.5E-11 1.4E-15 107.8 12.4 108 595-753 3-110 (111)
67 cd04642 CBS_pair_29 The CBS do 99.3 6.8E-11 1.5E-15 110.6 12.9 123 595-753 3-125 (126)
68 TIGR01137 cysta_beta cystathio 99.3 6.5E-11 1.4E-15 135.9 15.3 148 555-755 305-453 (454)
69 cd04636 CBS_pair_23 The CBS do 99.2 6.4E-11 1.4E-15 111.7 12.4 129 595-753 3-131 (132)
70 cd04635 CBS_pair_22 The CBS do 99.2 4.9E-11 1.1E-15 110.5 11.4 119 595-753 3-121 (122)
71 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 8.8E-11 1.9E-15 105.9 12.6 103 595-753 3-105 (106)
72 COG0038 EriC Chloride channel 99.2 9.9E-11 2.1E-15 132.7 15.8 182 76-285 235-418 (443)
73 cd04615 CBS_pair_2 The CBS dom 99.2 9.9E-11 2.2E-15 106.8 12.8 110 595-753 3-112 (113)
74 PF00654 Voltage_CLC: Voltage 99.2 8.9E-11 1.9E-15 130.1 14.7 185 75-282 163-353 (355)
75 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.6E-10 3.5E-15 104.9 13.8 108 595-753 3-110 (111)
76 cd04585 CBS_pair_ACT_assoc2 Th 99.2 1.2E-10 2.5E-15 107.6 12.6 119 595-753 3-121 (122)
77 cd04643 CBS_pair_30 The CBS do 99.2 9.3E-11 2E-15 107.5 11.8 114 595-754 3-116 (116)
78 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.5E-10 3.2E-15 105.6 13.0 110 595-753 3-112 (113)
79 cd04599 CBS_pair_GGDEF_assoc2 99.2 9.5E-11 2.1E-15 105.4 11.6 102 595-753 3-104 (105)
80 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1.5E-10 3.3E-15 105.0 13.1 108 595-753 3-110 (111)
81 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.1E-10 2.4E-15 106.5 12.2 110 595-753 4-113 (114)
82 cd04620 CBS_pair_7 The CBS dom 99.2 1.4E-10 2.9E-15 106.4 12.7 109 595-753 3-114 (115)
83 cd04622 CBS_pair_9 The CBS dom 99.2 1.9E-10 4E-15 104.9 13.4 110 595-753 3-112 (113)
84 cd04621 CBS_pair_8 The CBS dom 99.2 1.2E-10 2.6E-15 110.7 12.6 132 595-753 3-134 (135)
85 cd04632 CBS_pair_19 The CBS do 99.2 1.3E-10 2.8E-15 108.9 12.6 124 595-754 3-128 (128)
86 TIGR01302 IMP_dehydrog inosine 99.2 8.5E-11 1.8E-15 133.7 13.5 118 584-756 80-201 (450)
87 PRK03655 putative ion channel 99.2 3E-10 6.5E-15 127.5 17.5 172 75-282 222-397 (414)
88 cd04637 CBS_pair_24 The CBS do 99.2 1.4E-10 3E-15 107.5 12.1 120 595-754 3-122 (122)
89 cd03684 ClC_3_like ClC-3-like 99.2 2.5E-10 5.3E-15 129.9 16.6 194 74-285 205-427 (445)
90 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2.3E-10 5E-15 104.1 13.1 108 595-753 3-110 (111)
91 cd04640 CBS_pair_27 The CBS do 99.2 8.6E-11 1.9E-15 110.0 10.4 116 595-753 3-125 (126)
92 cd04601 CBS_pair_IMPDH This cd 99.2 1.1E-10 2.3E-15 105.9 10.8 105 595-753 4-109 (110)
93 cd04591 CBS_pair_EriC_assoc_eu 99.2 2.3E-10 5E-15 103.7 12.7 102 595-754 4-105 (105)
94 PRK11573 hypothetical protein; 99.2 1.2E-10 2.6E-15 130.8 12.8 133 581-762 184-317 (413)
95 COG2905 Predicted signal-trans 99.2 6.8E-11 1.5E-15 130.6 10.1 127 581-758 146-272 (610)
96 PRK05567 inosine 5'-monophosph 99.2 1.4E-10 3.1E-15 133.3 13.1 117 585-756 88-205 (486)
97 COG0517 FOG: CBS domain [Gener 99.2 4.3E-10 9.4E-15 103.1 13.7 113 588-752 3-117 (117)
98 cd04602 CBS_pair_IMPDH_2 This 99.2 3E-10 6.5E-15 104.1 12.4 108 595-753 4-113 (114)
99 cd02205 CBS_pair The CBS domai 99.2 3.7E-10 8.1E-15 101.7 12.7 110 595-753 3-112 (113)
100 cd04610 CBS_pair_ParBc_assoc T 99.2 3E-10 6.4E-15 102.5 12.0 103 595-753 4-106 (107)
101 cd04589 CBS_pair_CAP-ED_DUF294 99.2 5E-10 1.1E-14 101.9 13.5 108 595-753 3-110 (111)
102 cd04625 CBS_pair_12 The CBS do 99.2 4.9E-10 1.1E-14 102.1 13.4 109 595-753 3-111 (112)
103 TIGR00393 kpsF KpsF/GutQ famil 99.2 2.1E-10 4.6E-15 122.2 12.4 115 583-747 154-268 (268)
104 cd04802 CBS_pair_3 The CBS dom 99.1 7E-10 1.5E-14 101.0 13.9 109 595-753 3-111 (112)
105 PLN02274 inosine-5'-monophosph 99.1 2.5E-10 5.5E-15 130.6 13.2 116 590-757 106-223 (505)
106 PTZ00314 inosine-5'-monophosph 99.1 1.8E-10 3.9E-15 131.9 11.9 119 586-756 98-218 (495)
107 cd04584 CBS_pair_ACT_assoc Thi 99.1 3.7E-10 8.1E-15 104.3 11.9 118 595-753 3-120 (121)
108 cd04606 CBS_pair_Mg_transporte 99.1 2.4E-10 5.3E-15 103.8 10.2 102 598-754 2-108 (109)
109 cd04609 CBS_pair_PALP_assoc2 T 99.1 5.2E-10 1.1E-14 101.2 12.3 108 595-754 3-110 (110)
110 cd04594 CBS_pair_EriC_assoc_ar 99.1 6.3E-10 1.4E-14 100.3 12.6 100 596-753 4-103 (104)
111 cd04633 CBS_pair_20 The CBS do 99.1 4.4E-10 9.5E-15 103.9 11.8 119 595-754 3-121 (121)
112 PRK14869 putative manganese-de 99.1 3.8E-10 8.2E-15 132.4 14.0 169 584-757 68-305 (546)
113 COG1253 TlyC Hemolysins and re 99.1 4.8E-10 1E-14 127.2 13.1 132 581-764 203-336 (429)
114 cd04634 CBS_pair_21 The CBS do 99.1 1.3E-09 2.9E-14 104.5 13.0 135 595-753 3-142 (143)
115 cd04598 CBS_pair_GGDEF_assoc T 99.1 9.6E-10 2.1E-14 101.3 11.3 112 595-753 3-118 (119)
116 cd03685 ClC_6_like ClC-6-like 99.1 1.7E-09 3.7E-14 123.6 15.7 168 73-284 274-441 (466)
117 cd04638 CBS_pair_25 The CBS do 99.1 1.4E-09 3E-14 98.2 11.7 103 595-753 3-105 (106)
118 COG2239 MgtE Mg/Co/Ni transpor 99.0 5.4E-10 1.2E-14 124.9 8.2 153 583-794 131-288 (451)
119 cd01036 ClC_euk Chloride chann 99.0 1.1E-08 2.3E-13 115.8 16.5 174 74-284 234-409 (416)
120 COG4536 CorB Putative Mg2+ and 98.9 2.5E-09 5.4E-14 113.0 9.1 131 581-761 197-329 (423)
121 COG4535 CorC Putative Mg2+ and 98.9 4.6E-09 9.9E-14 104.1 8.1 130 581-762 64-195 (293)
122 PF00571 CBS: CBS domain CBS d 98.8 8.9E-09 1.9E-13 82.1 6.1 55 702-756 2-56 (57)
123 cd03683 ClC_1_like ClC-1-like 98.8 6.1E-08 1.3E-12 109.9 15.0 177 74-284 230-406 (426)
124 cd04592 CBS_pair_EriC_assoc_eu 98.7 7.6E-08 1.6E-12 91.3 11.3 116 595-739 3-118 (133)
125 PF00571 CBS: CBS domain CBS d 98.5 2.2E-07 4.7E-12 74.0 7.1 56 586-646 1-56 (57)
126 KOG1764 5'-AMP-activated prote 98.4 1E-06 2.2E-11 97.8 11.0 124 593-759 238-362 (381)
127 TIGR01186 proV glycine betaine 98.4 2.3E-06 5E-11 94.6 13.5 108 595-757 252-359 (363)
128 KOG2550 IMP dehydrogenase/GMP 98.4 6.2E-07 1.3E-11 95.7 8.0 111 595-756 118-228 (503)
129 PRK10070 glycine betaine trans 98.4 2.5E-06 5.4E-11 95.6 12.7 120 584-758 274-395 (400)
130 COG3448 CBS-domain-containing 98.3 6.1E-07 1.3E-11 92.0 3.7 151 538-756 152-302 (382)
131 cd04597 CBS_pair_DRTGG_assoc2 97.9 1.7E-05 3.8E-10 72.7 6.1 55 699-753 58-112 (113)
132 cd04597 CBS_pair_DRTGG_assoc2 97.8 4.6E-05 9.9E-10 69.9 7.1 54 584-642 58-111 (113)
133 PRK14869 putative manganese-de 97.8 1.1E-05 2.3E-10 95.0 3.4 141 582-754 244-391 (546)
134 KOG0475 Cl- channel CLC-3 and 97.8 8.3E-05 1.8E-09 84.0 9.4 190 76-282 309-513 (696)
135 COG2524 Predicted transcriptio 97.8 2.5E-05 5.4E-10 79.2 4.6 59 699-758 172-230 (294)
136 cd04618 CBS_pair_5 The CBS dom 97.7 4.2E-05 9E-10 68.2 4.9 47 709-755 3-50 (98)
137 TIGR00400 mgtE Mg2+ transporte 97.7 3.5E-05 7.6E-10 88.2 5.5 114 584-758 195-308 (449)
138 COG3620 Predicted transcriptio 97.7 5E-05 1.1E-09 71.5 4.5 62 697-759 63-124 (187)
139 cd04641 CBS_pair_28 The CBS do 97.6 0.00021 4.5E-09 65.8 7.2 49 708-756 2-50 (120)
140 cd04603 CBS_pair_KefB_assoc Th 97.5 0.00015 3.3E-09 65.8 6.0 55 584-643 56-110 (111)
141 cd04614 CBS_pair_1 The CBS dom 97.5 0.00014 3E-09 64.5 5.5 48 708-755 2-49 (96)
142 smart00116 CBS Domain in cysta 97.5 0.00025 5.4E-09 52.9 6.0 47 709-755 2-48 (49)
143 cd04619 CBS_pair_6 The CBS dom 97.4 0.00025 5.4E-09 64.7 6.1 56 583-643 58-113 (114)
144 cd04592 CBS_pair_EriC_assoc_eu 97.4 0.00042 9E-09 65.6 7.2 50 708-757 2-51 (133)
145 PRK10892 D-arabinose 5-phospha 97.4 0.00018 3.9E-09 79.0 5.2 59 698-756 201-261 (326)
146 PRK11543 gutQ D-arabinose 5-ph 97.3 0.0002 4.4E-09 78.4 5.1 58 699-756 197-256 (321)
147 cd04608 CBS_pair_PALP_assoc Th 97.3 0.0007 1.5E-08 63.0 7.5 51 707-757 2-52 (124)
148 cd04600 CBS_pair_HPP_assoc Thi 97.3 0.00054 1.2E-08 63.1 6.4 50 707-756 2-51 (124)
149 cd04617 CBS_pair_4 The CBS dom 97.3 0.00041 8.9E-09 63.7 5.4 56 583-643 57-117 (118)
150 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.00064 1.4E-08 60.9 6.4 49 707-755 2-50 (109)
151 PRK05567 inosine 5'-monophosph 97.2 0.0011 2.4E-08 76.6 9.6 57 584-645 147-204 (486)
152 cd04605 CBS_pair_MET2_assoc Th 97.2 0.0011 2.3E-08 59.7 7.3 50 707-756 2-51 (110)
153 cd04624 CBS_pair_11 The CBS do 97.2 0.001 2.2E-08 60.1 7.1 50 708-757 2-51 (112)
154 cd04582 CBS_pair_ABC_OpuCA_ass 97.2 0.00096 2.1E-08 59.6 6.8 48 708-755 2-49 (106)
155 cd04607 CBS_pair_NTP_transfera 97.1 0.00094 2E-08 60.5 6.4 54 584-642 58-111 (113)
156 cd04613 CBS_pair_SpoIVFB_EriC_ 97.1 0.001 2.3E-08 60.0 6.6 50 707-756 1-50 (114)
157 cd04642 CBS_pair_29 The CBS do 97.1 0.00056 1.2E-08 63.6 4.8 49 708-756 2-50 (126)
158 cd04643 CBS_pair_30 The CBS do 97.1 0.0013 2.8E-08 59.8 6.9 49 708-756 2-50 (116)
159 cd04623 CBS_pair_10 The CBS do 97.1 0.0015 3.2E-08 58.9 7.1 50 708-757 2-51 (113)
160 cd04593 CBS_pair_EriC_assoc_ba 97.1 0.0014 3.1E-08 59.5 7.0 50 708-757 2-51 (115)
161 cd04606 CBS_pair_Mg_transporte 97.1 0.0011 2.5E-08 59.6 6.3 57 583-644 52-108 (109)
162 TIGR00393 kpsF KpsF/GutQ famil 97.1 0.00054 1.2E-08 72.9 4.7 59 698-756 154-213 (268)
163 PRK07807 inosine 5-monophospha 97.1 0.00071 1.5E-08 77.5 5.8 56 698-753 88-143 (479)
164 cd04620 CBS_pair_7 The CBS dom 97.1 0.0011 2.4E-08 60.2 6.1 56 583-643 57-114 (115)
165 cd04625 CBS_pair_12 The CBS do 97.0 0.0015 3.2E-08 59.0 6.8 55 583-643 57-111 (112)
166 cd04585 CBS_pair_ACT_assoc2 Th 97.0 0.0013 2.9E-08 60.0 6.4 57 582-643 65-121 (122)
167 cd04615 CBS_pair_2 The CBS dom 97.0 0.0015 3.2E-08 59.1 6.6 56 582-642 56-111 (113)
168 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0014 3.1E-08 58.9 6.4 56 583-643 52-107 (108)
169 cd04627 CBS_pair_14 The CBS do 97.0 0.0011 2.3E-08 61.3 5.5 52 586-642 70-121 (123)
170 cd04630 CBS_pair_17 The CBS do 97.0 0.0016 3.5E-08 59.2 6.6 55 583-643 59-113 (114)
171 cd04640 CBS_pair_27 The CBS do 97.0 0.0017 3.7E-08 60.3 6.7 46 708-753 2-47 (126)
172 TIGR01302 IMP_dehydrog inosine 97.0 0.00094 2E-08 76.4 5.8 58 697-754 78-138 (450)
173 cd04586 CBS_pair_BON_assoc Thi 97.0 0.0016 3.5E-08 61.3 6.5 50 707-756 2-51 (135)
174 cd04621 CBS_pair_8 The CBS dom 97.0 0.002 4.2E-08 61.0 7.0 56 582-643 79-134 (135)
175 cd04632 CBS_pair_19 The CBS do 97.0 0.0022 4.7E-08 59.6 7.1 48 708-755 2-49 (128)
176 cd04631 CBS_pair_18 The CBS do 96.9 0.0018 4E-08 59.7 6.5 50 708-757 2-52 (125)
177 cd04610 CBS_pair_ParBc_assoc T 96.9 0.002 4.3E-08 57.6 6.4 55 584-643 52-106 (107)
178 cd04588 CBS_pair_CAP-ED_DUF294 96.9 0.0025 5.4E-08 57.3 7.1 49 708-757 2-50 (110)
179 TIGR01137 cysta_beta cystathio 96.9 0.0016 3.5E-08 75.0 7.1 60 698-757 334-393 (454)
180 cd04629 CBS_pair_16 The CBS do 96.9 0.0018 3.8E-08 58.6 6.0 49 708-756 2-50 (114)
181 cd04584 CBS_pair_ACT_assoc Thi 96.9 0.0018 3.9E-08 59.2 6.1 48 708-755 2-49 (121)
182 cd04801 CBS_pair_M50_like This 96.9 0.0021 4.4E-08 58.4 6.4 49 708-756 2-51 (114)
183 cd04612 CBS_pair_SpoIVFB_EriC_ 96.9 0.0023 4.9E-08 57.5 6.6 50 707-757 1-50 (111)
184 cd04803 CBS_pair_15 The CBS do 96.9 0.0019 4.2E-08 59.2 6.1 57 582-643 65-121 (122)
185 cd04635 CBS_pair_22 The CBS do 96.9 0.0022 4.7E-08 58.9 6.4 57 582-643 65-121 (122)
186 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0017 3.7E-08 58.6 5.6 54 584-642 58-111 (113)
187 cd04602 CBS_pair_IMPDH_2 This 96.9 0.0022 4.7E-08 58.3 6.3 55 584-643 57-113 (114)
188 cd04639 CBS_pair_26 The CBS do 96.9 0.0019 4.2E-08 58.1 5.9 55 584-643 56-110 (111)
189 cd04604 CBS_pair_KpsF_GutQ_ass 96.9 0.0022 4.9E-08 57.9 6.2 55 584-643 59-113 (114)
190 cd04802 CBS_pair_3 The CBS dom 96.8 0.0027 5.8E-08 57.3 6.6 54 583-642 57-110 (112)
191 cd04611 CBS_pair_PAS_GGDEF_DUF 96.8 0.0026 5.6E-08 57.2 6.4 56 583-643 55-110 (111)
192 TIGR03415 ABC_choXWV_ATP choli 96.8 0.0038 8.2E-08 69.7 8.9 51 705-757 331-381 (382)
193 cd04609 CBS_pair_PALP_assoc2 T 96.8 0.0029 6.2E-08 56.7 6.5 49 708-757 2-50 (110)
194 PRK07107 inosine 5-monophospha 96.8 0.0024 5.2E-08 73.7 7.4 57 583-644 160-218 (502)
195 cd04590 CBS_pair_CorC_HlyC_ass 96.8 0.0033 7.2E-08 56.6 6.9 51 708-758 2-53 (111)
196 cd04800 CBS_pair_CAP-ED_DUF294 96.8 0.0026 5.7E-08 57.2 6.1 55 583-643 56-110 (111)
197 smart00116 CBS Domain in cysta 96.8 0.0037 8E-08 46.4 6.0 47 595-645 2-48 (49)
198 cd04595 CBS_pair_DHH_polyA_Pol 96.8 0.0032 7E-08 56.6 6.7 55 583-643 55-109 (110)
199 KOG1764 5'-AMP-activated prote 96.8 0.0059 1.3E-07 68.1 10.0 125 595-758 164-288 (381)
200 cd02205 CBS_pair The CBS domai 96.8 0.0038 8.3E-08 55.5 7.0 51 708-758 2-52 (113)
201 cd04601 CBS_pair_IMPDH This cd 96.8 0.0026 5.7E-08 57.0 5.9 56 583-643 53-109 (110)
202 PTZ00314 inosine-5'-monophosph 96.8 0.0017 3.8E-08 74.9 5.8 53 701-753 98-153 (495)
203 COG4175 ProV ABC-type proline/ 96.8 0.0023 5E-08 67.6 6.1 113 581-757 271-384 (386)
204 cd04622 CBS_pair_9 The CBS dom 96.8 0.0025 5.4E-08 57.6 5.7 55 584-643 58-112 (113)
205 cd04589 CBS_pair_CAP-ED_DUF294 96.7 0.0036 7.7E-08 56.4 6.6 55 583-643 56-110 (111)
206 cd04598 CBS_pair_GGDEF_assoc T 96.7 0.003 6.4E-08 57.7 6.1 48 708-756 2-50 (119)
207 cd04633 CBS_pair_20 The CBS do 96.7 0.0034 7.3E-08 57.5 6.4 57 581-643 64-120 (121)
208 cd04636 CBS_pair_23 The CBS do 96.7 0.0042 9.2E-08 58.1 7.1 57 581-643 75-131 (132)
209 COG0517 FOG: CBS domain [Gener 96.7 0.0038 8.3E-08 56.6 6.6 52 585-641 63-116 (117)
210 cd04626 CBS_pair_13 The CBS do 96.7 0.0037 8E-08 56.3 6.4 53 584-642 57-109 (111)
211 TIGR01303 IMP_DH_rel_1 IMP deh 96.7 0.0036 7.7E-08 71.8 7.6 59 584-647 146-204 (475)
212 cd04599 CBS_pair_GGDEF_assoc2 96.7 0.004 8.6E-08 55.3 6.5 53 584-642 51-103 (105)
213 COG2905 Predicted signal-trans 96.7 0.002 4.3E-08 72.6 5.3 64 700-763 150-213 (610)
214 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.0035 7.7E-08 56.4 6.0 49 589-643 56-104 (105)
215 cd04594 CBS_pair_EriC_assoc_ar 96.6 0.0042 9E-08 55.5 6.1 53 585-643 51-103 (104)
216 TIGR03520 GldE gliding motilit 96.6 0.0024 5.3E-08 72.2 5.4 56 701-756 193-251 (408)
217 cd04634 CBS_pair_21 The CBS do 96.6 0.0043 9.3E-08 59.2 6.1 48 708-756 2-49 (143)
218 PLN02274 inosine-5'-monophosph 96.5 0.0031 6.7E-08 72.9 5.6 50 704-753 105-157 (505)
219 cd04637 CBS_pair_24 The CBS do 96.5 0.0058 1.3E-07 56.1 6.3 55 584-643 67-121 (122)
220 COG4109 Predicted transcriptio 96.4 0.0065 1.4E-07 64.6 6.8 62 581-647 246-307 (432)
221 PRK15094 magnesium/cobalt effl 96.1 0.0088 1.9E-07 64.5 6.1 56 700-755 68-126 (292)
222 cd04638 CBS_pair_25 The CBS do 95.9 0.018 4E-07 51.3 6.4 53 585-643 53-105 (106)
223 COG2239 MgtE Mg/Co/Ni transpor 95.1 0.03 6.4E-07 63.5 5.6 61 582-647 194-254 (451)
224 TIGR01186 proV glycine betaine 94.6 0.067 1.5E-06 59.5 6.8 57 585-647 303-359 (363)
225 KOG2550 IMP dehydrogenase/GMP 93.0 0.11 2.4E-06 56.6 4.3 57 583-644 170-226 (503)
226 PRK11573 hypothetical protein; 92.8 0.23 4.9E-06 56.4 7.0 55 701-755 189-246 (413)
227 PRK10070 glycine betaine trans 92.7 0.23 5.1E-06 55.9 6.8 58 585-648 338-395 (400)
228 KOG0474 Cl- channel CLC-7 and 91.8 1.3 2.8E-05 51.2 11.0 77 172-260 457-533 (762)
229 COG1253 TlyC Hemolysins and re 90.5 0.5 1.1E-05 53.9 6.6 58 701-758 208-268 (429)
230 KOG0476 Cl- channel CLC-2 and 90.5 0.34 7.3E-06 56.7 5.0 66 698-763 587-654 (931)
231 KOG2118 Predicted membrane pro 84.7 1.7 3.7E-05 50.4 6.3 130 580-760 200-332 (498)
232 TIGR03415 ABC_choXWV_ATP choli 82.7 2.6 5.6E-05 47.3 6.5 55 585-647 327-381 (382)
233 COG1125 OpuBA ABC-type proline 82.6 2.1 4.5E-05 44.6 5.1 42 713-754 267-308 (309)
234 COG4175 ProV ABC-type proline/ 71.5 7.5 0.00016 41.9 5.6 53 589-647 332-384 (386)
235 COG4535 CorC Putative Mg2+ and 70.7 18 0.00038 37.3 7.7 58 584-647 133-190 (293)
236 COG4536 CorB Putative Mg2+ and 59.6 17 0.00037 39.9 5.6 48 595-646 277-324 (423)
237 PRK09765 PTS system 2-O-a-mann 59.2 3.7E+02 0.008 32.5 17.4 41 234-285 526-568 (631)
238 PF10518 TAT_signal: TAT (twin 55.8 8.6 0.00019 25.3 1.7 23 228-250 3-25 (26)
239 COG1125 OpuBA ABC-type proline 53.8 21 0.00046 37.5 4.9 58 581-643 246-307 (309)
240 TIGR02865 spore_II_E stage II 53.8 5.2E+02 0.011 32.0 20.5 83 480-566 197-289 (764)
241 PRK10478 putative PTS system f 45.8 4.4E+02 0.0095 29.4 13.9 22 169-190 177-198 (359)
242 PRK11388 DNA-binding transcrip 43.0 40 0.00087 40.7 6.0 146 558-747 14-162 (638)
243 PRK02509 hypothetical protein; 40.4 3.4E+02 0.0073 34.1 13.0 21 317-337 325-345 (973)
244 PF01102 Glycophorin_A: Glycop 36.3 45 0.00097 31.0 3.8 17 320-336 66-82 (122)
245 PRK09400 secE preprotein trans 29.1 1.8E+02 0.0038 23.6 5.6 29 70-98 29-58 (61)
246 COG3817 Predicted membrane pro 27.4 1.2E+02 0.0025 31.8 5.3 26 500-525 245-270 (313)
247 KOG4267 Predicted membrane pro 26.4 1.2E+02 0.0026 27.5 4.5 46 475-521 28-73 (110)
248 COG4129 Predicted membrane pro 24.2 1.6E+02 0.0034 32.4 6.1 49 520-568 107-159 (332)
249 PRK01844 hypothetical protein; 23.9 1.9E+02 0.0041 24.2 4.9 21 317-337 4-24 (72)
250 KOG0236 Sulfate/bicarbonate/ox 22.9 2.9E+02 0.0064 33.5 8.6 19 228-246 361-379 (665)
251 PF04550 Phage_holin_2: Phage 21.1 4.5E+02 0.0098 22.9 6.8 50 462-516 23-72 (89)
252 PF10399 UCR_Fe-S_N: Ubiquitin 20.7 64 0.0014 23.9 1.5 19 226-244 8-28 (41)
253 COG5336 Uncharacterized protei 20.4 2.2E+02 0.0049 25.8 5.0 46 272-335 48-93 (116)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-157 Score=1267.15 Aligned_cols=689 Identities=54% Similarity=0.923 Sum_probs=638.0
Q ss_pred CCCCCCCccccchhchHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Q 003732 39 GSSSVESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS--- 115 (799)
Q Consensus 39 ~~~~~esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~--- 115 (799)
++++|||||||++||+.|+|+||++.+.+.++|.+.||+++++||+++|++|.++|..+|++.++|+.++.+.+.+.
T Consensus 51 k~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~ 130 (762)
T KOG0474|consen 51 KVCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQ 130 (762)
T ss_pred CCCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999987776654
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccc
Q 003732 116 ---YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEG 192 (799)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EG 192 (799)
++..++.|.+++++++++++.++.+++|.|+||||||||+||||+++|+.+++||+++|++|+++++++|+.+||||
T Consensus 131 ~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEG 210 (762)
T KOG0474|consen 131 KGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEG 210 (762)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHH
Q 003732 193 PLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVF 272 (799)
Q Consensus 193 P~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~ 272 (799)
||||.||+||+.++|++|.+++++|||+|+||||+|||++++||+|||+||+|+||+||+||++||.++||++.++||+|
T Consensus 211 PMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~f 290 (762)
T KOG0474|consen 211 PMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTF 290 (762)
T ss_pred CeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 003732 273 FTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH 352 (799)
Q Consensus 273 ~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~ 352 (799)
|++++++++++.++..|.+|+|+.|+.+++++|++.+....|+.+|+++|+++||+||++|++||.+|....+.+ +.+
T Consensus 291 Fss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r--~~~ 368 (762)
T KOG0474|consen 291 FSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRR--YNY 368 (762)
T ss_pred HHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHH--Hhc
Confidence 999999999999999999999999999999999999777899999999999999999999999995544433333 335
Q ss_pred ccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHH
Q 003732 353 KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDA 432 (799)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~ 432 (799)
.|.+..|++++++++++|+++.|.+|++.+|+|||.+... .+|| +|+||+|+ |||+|+|+|||+||+
T Consensus 369 ~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~--~~~p----------~f~Cp~~~-YNdlAtL~fnt~dda 435 (762)
T KOG0474|consen 369 EKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITE--GQCP----------TFFCPDGE-YNDLATLFFNTNDDA 435 (762)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCccc--ccCc----------cccCCCCc-hhHHHHHHcCCcHHH
Confidence 6777889999999999999999999999999999974321 1455 48999998 999999999999999
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh
Q 003732 433 IRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAA 512 (799)
Q Consensus 433 i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaa 512 (799)
|+++||..+ ++|++.+|++|++.+++++++|||+.+|+|+|+|++++||++||++|+++..++ ++|||.||++|||
T Consensus 436 VrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~---~id~G~yAllGAA 511 (762)
T KOG0474|consen 436 VRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYT---NIDPGLYALLGAA 511 (762)
T ss_pred HHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhh---ccCchHHHHHhHH
Confidence 999999876 999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred hhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhhcccHHHHHHHhcCCCCCCCCchhhhcccchhhhccC
Q 003732 513 SFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA 592 (799)
Q Consensus 513 a~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~ 592 (799)
|++||++|||+|++||++|+| +..+++|+|++.++|++|+|.||+++||.+++.||+|++++++++.+++++|+|+|++
T Consensus 512 a~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~ 590 (762)
T KOG0474|consen 512 AFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSK 590 (762)
T ss_pred HHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccC
Confidence 999999999999999999999 5677888899999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCC-CceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccc
Q 003732 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNG-ERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSF 671 (799)
Q Consensus 593 ~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~-~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (799)
+ +++++..+++..++++|++++||+|||||++..+ .+++.|+|.|+||+.+|+++. |.++......+ +..+++
T Consensus 591 p-vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~-f~~~~~~~~~~----~~~~~~ 664 (762)
T KOG0474|consen 591 P-VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRV-FVEESRSTFDL----PVRRKF 664 (762)
T ss_pred C-eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhh-hhccCccccCc----chhhcC
Confidence 9 9999999999999999999999999999985432 379999999999999999988 65443322221 111111
Q ss_pred ccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhh
Q 003732 672 SEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (799)
Q Consensus 672 ~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DL 751 (799)
+ + ++..++.++++|+.++++|+++++|++|+||++|++|++++|+.+++.+||+.|+||+.||++.++++|++||+|+
T Consensus 665 ~-~-~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 665 T-F-RDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred C-H-HHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 1 1 1222467789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHh
Q 003732 752 LIED 755 (799)
Q Consensus 752 l~~~ 755 (799)
.++.
T Consensus 743 ~~~~ 746 (762)
T KOG0474|consen 743 ARYR 746 (762)
T ss_pred hhHH
Confidence 9876
No 2
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-86 Score=730.58 Aligned_cols=647 Identities=26% Similarity=0.471 Sum_probs=496.1
Q ss_pred HHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003732 58 EEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYI 137 (799)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 137 (799)
++|..|..+++++.....|++.+++|++++++++.+|.+++.+++.+.+....+-.......|+.|+.+++.+.++++.+
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f 157 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGF 157 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777888899999999999999999999999999998887655443333335577888999999999999999
Q ss_pred hhhcccccCCCCHHHHHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCcccccccc
Q 003732 138 ITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRY 217 (799)
Q Consensus 138 ~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~ 217 (799)
+++++|+|-||||||||.+|+|+..+++++.||+++|++|..+++|||+++|||||+||+++.+++.+++..+.
T Consensus 158 ~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~------ 231 (931)
T KOG0476|consen 158 CHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTAC------ 231 (931)
T ss_pred HheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875322
Q ss_pred ccccccCChhhhhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCccccc
Q 003732 218 RWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHF 297 (799)
Q Consensus 218 ~~~~~f~~~~~~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f 297 (799)
..-..|+|+....+++++|+|.|||+.|.||+|||||++|++++||..++|||.||+++.++++++.+..|.....-..
T Consensus 232 ~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~tI- 310 (931)
T KOG0476|consen 232 QFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVTI- 310 (931)
T ss_pred hccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhhh-
Confidence 2335678888899999999999999999999999999999999999999999999999999999999876654211100
Q ss_pred CCCceEEeeccC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HH--HhcccCCceeeeehhHHHHHHH
Q 003732 298 GSGGFIIWDISD-GQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWR---RN--YLHKKGNRVKIIEACVISVITS 371 (799)
Q Consensus 298 ~~~~~~~f~~~~-~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~ 371 (799)
...|+.++ .+.+|.+.|+|+|+++|++||++|++|+ ++.+++. |. +.++-....|++.+.+++++.+
T Consensus 311 ----tA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fV---ylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~s 383 (931)
T KOG0476|consen 311 ----TALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFV---YLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFS 383 (931)
T ss_pred ----HHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceee---eeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHh
Confidence 01223332 3458999999999999999999999999 5544331 11 1111122347888999998888
Q ss_pred HHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCccc---chhhhhhccC------------cHHHHHHh
Q 003732 372 VISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEY---NDLATIFFNT------------QDDAIRNL 436 (799)
Q Consensus 372 ~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y---~~la~l~~~~------------~~~~i~~l 436 (799)
.+.|..- + | .|. .|+ + ..+.+++.|- +.....+.
T Consensus 384 sltfP~G-l---------------------G---~f~-----aG~-l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW 432 (931)
T KOG0476|consen 384 SLTFPPG-L---------------------G---QFL-----AGR-LSFRETLVDFFDNCTWWVQTNDSELCPAHILTHW 432 (931)
T ss_pred heecCCc-c---------------------c---ccc-----ccc-ccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhh
Confidence 8776321 1 1 110 111 0 0111111000 00000111
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCCCChHHHHH
Q 003732 437 FSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLNIEEGTYAL 508 (799)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~--------~~~~~~~~~al 508 (799)
.+. ....-.+.+|++|++.||++++++..+.+|+|+|+|.+++||++||++|+.+..++| .+.+.||.||+
T Consensus 433 ~~p-~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAV 511 (931)
T KOG0476|consen 433 YHP-EGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAV 511 (931)
T ss_pred cCC-CCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhh
Confidence 110 001223567999999999999999999999999999999999999999998877653 23688999999
Q ss_pred HHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhhcccHHHHHHHhcCCCCCCCCchhh--hcccch
Q 003732 509 LGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYK--MRQMTA 586 (799)
Q Consensus 509 iGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~--l~~l~v 586 (799)
+|||||- |+..+|+|.+||++|+||++..++|+|+|+++|+.|+.++.+|+||..++.|++|||++.++.. .+.+.|
T Consensus 512 VGAAAfs-GaVTHTvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~V 590 (931)
T KOG0476|consen 512 VGAAAFS-GAVTHTVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKV 590 (931)
T ss_pred hhhhhhc-cceeeeeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEe
Confidence 9999975 5555799999999999999999999999999999999999999999999999999999877654 468899
Q ss_pred hhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCC----------
Q 003732 587 KEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL---------- 656 (799)
Q Consensus 587 ~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~---------- 656 (799)
+|+|.+| +..+..++|.+|+.+.++.++.+.||+||+++ +..++|.|.|++|..+++++. .++++
T Consensus 591 E~iMV~d-v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e--smiLlGSV~R~~L~~ll~~~i--g~~~r~~~a~~r~r~ 665 (931)
T KOG0476|consen 591 EHIMVTD-VKYITKDTTYRELREALQTTTLRSFPLVESKE--SMILLGSVARRYLTALLQRHI--GPEPRLVEAQKRVRT 665 (931)
T ss_pred eeecccc-ceeeeccCcHHHHHHHHHhCccceeccccCcc--cceeeehhHHHHHHHHHHhhc--CccHhHHHHHHHhhh
Confidence 9999999 99999999999999999998899999999854 789999999999999887632 11111
Q ss_pred --------------------CCCCCC-------CCC------cc--------------cccccc-------------ccc
Q 003732 657 --------------------PCDTRG-------GSK------PI--------------SHSFSE-------------FVK 676 (799)
Q Consensus 657 --------------------~~~~~~-------~~~------~~--------------~~~~~~-------------~~~ 676 (799)
.++... .++ +. .+.+.+ ..+
T Consensus 666 ~~E~~~~~~~~~~~ee~~~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~ 745 (931)
T KOG0476|consen 666 ASEIFLTIFERSKKEEPPRRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRD 745 (931)
T ss_pred hhhchhhhhhhhhccCCCCCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCccccccccccc
Confidence 000000 000 00 000000 000
Q ss_pred cCC-CC------------------------CCCccccccCccc--------cccccccccc-cCCCCeeecCCCCHHHHH
Q 003732 677 PAS-SK------------------------GLSIDDIHLSSDD--------MEMYIDLGPF-LNPSPYVVPEDMSLSKVY 722 (799)
Q Consensus 677 ~~~-~~------------------------~~~i~di~~~~~~--------~~~~idl~~~-m~~~p~tV~~~~sL~~a~ 722 (799)
... .+ ...-.+.++..+| .+..+|+.+. +|+.|+.+.+.+||.+++
T Consensus 746 ~~~~~~~p~~~~~~l~~~~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~H 825 (931)
T KOG0476|consen 746 MESPLHGPAAEHHPLHKLLTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVH 825 (931)
T ss_pred cccCCCCCcccccccccccccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHH
Confidence 000 00 0000001122221 2345666664 689999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 723 NLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 723 ~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
.+|.-+|++|..|++. ||++|+|+.+||.++..+
T Consensus 826 tLFSLLgL~~AYVT~~-GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 826 TLFSLLGLNHAYVTSC-GRLVGVVALKELRKAIEN 859 (931)
T ss_pred HHHHHhccchhhhccc-CcEEEEEEHHHHHHHHHh
Confidence 9999999999999998 999999999999998876
No 3
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-84 Score=706.07 Aligned_cols=589 Identities=32% Similarity=0.548 Sum_probs=464.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHh----h-hh-hhhhHHHHHH
Q 003732 79 ALLIGIGTGLAAVFINISVENFAGWKFSLT---------------------------FSII----Q-KS-YFAGFLVYIL 125 (799)
Q Consensus 79 ~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~---------------------------~~~~----~-~~-~~~~~~~~~~ 125 (799)
.+++|..+|..+.+.+...+| ++|.+.. ...+ + .+ +...|++|+.
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~ 135 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVL 135 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHH
Confidence 488888999888888888876 2221110 0000 0 01 3458999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCHHHHHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHh
Q 003732 126 INLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLL 205 (799)
Q Consensus 126 ~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l 205 (799)
+++.++.++..+++.++|.|.||||||+|+.+.|..+.+++..+|++.|.++..++++||+|+|||||+||++.|+|+.+
T Consensus 136 ~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~ 215 (696)
T KOG0475|consen 136 WALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIF 215 (696)
T ss_pred HHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccccccc-ccCChhhhhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 206 GQGGSTKYHLRYRWLQ-VFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 206 ~~~~s~~~~~~~~~~~-~f~~~~~~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
++ +++ +-.|+..+|+.++|.+|||+|++|||||||++|++|+++++++.+.+|+.|+|+.+|..+++.
T Consensus 216 s~-----------~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~ 284 (696)
T KOG0475|consen 216 SK-----------IFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRS 284 (696)
T ss_pred hh-----------hhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHee
Confidence 87 333 334778899999999999999999999999999999999999999999999999999998876
Q ss_pred hhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehh
Q 003732 285 AMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEAC 364 (799)
Q Consensus 285 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (799)
. ..|+++....|.+. .+.+|++.|+++|+++|++||+.|.+|.|+| .++.+++...+...+++++++
T Consensus 285 i---------~pf~~~~~vLf~V~-Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n---~~~~~~rK~~~lg~~pv~ev~ 351 (696)
T KOG0475|consen 285 I---------NPFGNSRLVLFYVD-YDRPWSLFELLPFILLGIFGGLWGAFFIRLN---IRFCRFRKSSKLGKFPVLEVV 351 (696)
T ss_pred e---------cccCCCceEEEEEe-ccCCcccccchHHHHHHHhhhHHHHHHHHHH---HHHHhccchhhccCCcchhHH
Confidence 4 46777777778776 6789999999999999999999999999544 444443322234567899999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccc
Q 003732 365 VISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHE 444 (799)
Q Consensus 365 ~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~ 444 (799)
.++++|++++|+.|+++-....-. ......|+ ...+- + + -+ +..-
T Consensus 352 ~vt~iTaiIs~~np~~r~~~~e~i--~~Lf~~C~---------------~~~s~-~---l-~~-------------~~~~ 396 (696)
T KOG0475|consen 352 FVTLVTAIISLFNPETRFNMSELI--TILFNKCS---------------PSSST-S---L-PE-------------TTVY 396 (696)
T ss_pred HHHHHHHHHHhcCHHHHhhHHHHH--HHHHhhcC---------------Ccccc-c---C-cc-------------cchH
Confidence 999999999999998731000000 00011121 11100 0 0 00 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCCCChHHHHHHHhhhhhh
Q 003732 445 YSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLNIEEGTYALLGAASFLG 516 (799)
Q Consensus 445 ~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~--------~~~~~~~~~aliGaaa~l~ 516 (799)
-..+.|+..+++|+++|++|+|+++|+|+|+|||.+||+.||++|.++..+.. ...+.|+.||++||||.++
T Consensus 397 ~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~Ls 476 (696)
T KOG0475|consen 397 SAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLS 476 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhc
Confidence 12456677788999999999999999999999999999999999988776543 2358899999999999999
Q ss_pred hhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhh-cccHHHHHHHhcCCCCCCCCchhhhcccchhhhccC---
Q 003732 517 GSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA--- 592 (799)
Q Consensus 517 g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~--- 592 (799)
|++|+|+|++|||+|+||++.+++|+|+|+++|+||++.+ ..++||.+++++|+|+++++.+.. +--..++|.+
T Consensus 477 GvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~ 554 (696)
T KOG0475|consen 477 GVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRS 554 (696)
T ss_pred CcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcC
Confidence 9999999999999999999999999999999999999999 778999999999999997765543 3334455432
Q ss_pred -CceEEecCc-ccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccc
Q 003732 593 -QKVVSLPRI-IKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHS 670 (799)
Q Consensus 593 -~kvv~l~~~-~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (799)
++..+++.+ ++++|+..+|+++++++||||-+. ++++++|+|+|+|+...+.+.....+... + .+
T Consensus 555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~--~sq~lvGfv~rr~l~~~i~~ar~~q~~~~---------~--~~ 621 (696)
T KOG0475|consen 555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE--DSQRLVGFVLRRNLFLAILNARKIQSFIV---------T--TS 621 (696)
T ss_pred chhheeccccceeHHHHHHHHhhcccCCceEEEcc--ccceeEEEEchHHHHHHHhhhccccccce---------e--cc
Confidence 225556554 899999999999999999998652 27899999999999876654220100000 0 00
Q ss_pred cccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHh
Q 003732 671 FSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKD 750 (799)
Q Consensus 671 ~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~D 750 (799)
. .+.++. .....+.....|++.+|+.+|++|.+++|.+.+.++|++.|++++.|.++ |++.|+||+||
T Consensus 622 ~-~f~~~~----------~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~-G~l~Giitkkd 689 (696)
T KOG0475|consen 622 I-YFNDPS----------PSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN-GILLGIITKKD 689 (696)
T ss_pred c-ccCCCC----------ccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC-CeeEeeeehHH
Confidence 0 011111 11112334568899999999999999999999999999999999988765 99999999999
Q ss_pred hhhHh
Q 003732 751 LLIED 755 (799)
Q Consensus 751 Ll~~~ 755 (799)
+++..
T Consensus 690 ~l~~~ 694 (696)
T KOG0475|consen 690 CLRHT 694 (696)
T ss_pred HHHhh
Confidence 99864
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=4.1e-77 Score=675.92 Aligned_cols=459 Identities=56% Similarity=0.942 Sum_probs=393.9
Q ss_pred CCccccchhchHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHH
Q 003732 44 ESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS-YFAGFLV 122 (799)
Q Consensus 44 esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 122 (799)
||+||++.||+++|.|||+|++++...+.+.||++++++|+++|+++.+++..++++++++.....+...+. .+..|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLV 80 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 899999999999999999999988899999999999999999999999999999999999877654444333 4455677
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHH
Q 003732 123 YILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIA 202 (799)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig 202 (799)
|+.+++++++++++++.+++|.++|||+||+++++||.+.|+.+++|+++.|++++++++++|+|+|||||++|+||++|
T Consensus 81 ~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 81 YLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 77888899999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHhhccCccccccccccccccCChhhhhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHH
Q 003732 203 SLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (799)
Q Consensus 203 ~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~ 282 (799)
++++|..++.++++++++|+++++++||++++||+|||+||+|||||+|++|++||+.++|+.+..|+.++++++|+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99998766666666778888888899999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--cCCceee
Q 003732 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK--KGNRVKI 360 (799)
Q Consensus 283 ~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~--~~~~~~~ 360 (799)
+.+......+....|+.++.+.|+......+++..|+++++++|++||++|.+|+ +.+.+..+++.+. +.+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~---~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
T cd03685 241 NFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFN---HLNHKVTRFRKRINHKGKLLKV 317 (466)
T ss_pred HHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccchhHH
Confidence 8765543322223455444445554434456889999999999999999999999 4554444443221 1233456
Q ss_pred eehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcc
Q 003732 361 IEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAK 440 (799)
Q Consensus 361 ~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~ 440 (799)
+++++++++++++.+
T Consensus 318 l~~~lv~~~~~~~~~----------------------------------------------------------------- 332 (466)
T cd03685 318 LEALLVSLVTSVVAF----------------------------------------------------------------- 332 (466)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 666555555443211
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhcc
Q 003732 441 TIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMR 520 (799)
Q Consensus 441 ~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r 520 (799)
...+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.+.+..+.+|+.||++||||+++|++|
T Consensus 333 ------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~r 406 (466)
T cd03685 333 ------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMR 406 (466)
T ss_pred ------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhh
Confidence 12345566789999999999999999999999999999999999998876666789999999999999999999
Q ss_pred chhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhhcccHHHHHHHhcCCCCCCCC
Q 003732 521 MTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESR 576 (799)
Q Consensus 521 ~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~ 576 (799)
+|+|+++|++|+||++++++|+|+++++|+++++.+++|+||.+++.||+||+++.
T Consensus 407 aPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 407 MTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 5
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.1e-74 Score=677.35 Aligned_cols=543 Identities=19% Similarity=0.285 Sum_probs=438.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHH-HHHH
Q 003732 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIP-EIKG 155 (799)
Q Consensus 77 ~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip-ev~~ 155 (799)
++++++|+++|+++.+|+..+++++++++....++.......+|++...++++.+++++++..+..+.++++|++ .+++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~~ 105 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYMEA 105 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHH
Confidence 478999999999999999999999999875322111111112344444556666677777777666766655544 4666
Q ss_pred HHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHH
Q 003732 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (799)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~ 235 (799)
+.++ .+.+++|+.+.|++++++++++|+|+|||||++|+||++|+++++ |++. +++++|.+++|
T Consensus 106 ~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~ 169 (574)
T PRK01862 106 VALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVAC 169 (574)
T ss_pred HHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHH
Confidence 6654 345678999999999999999999999999999999999999987 4443 46778999999
Q ss_pred hhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCc
Q 003732 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYS 315 (799)
Q Consensus 236 G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~ 315 (799)
|+|||+||+||||++|++|++|++...|+.+.++++++++++++++.+.+ ++.++ .|+++ ....++
T Consensus 170 G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~-~~~~~~ 235 (574)
T PRK01862 170 GAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF-----------AGYQP--PYEMP-VFPAVT 235 (574)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeeCC-CcCcCC
Confidence 99999999999999999999999988898899999999998888887653 23333 35554 345678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCC
Q 003732 316 FEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGI 395 (799)
Q Consensus 316 ~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~ 395 (799)
..++++++++|++||++|++|+ +.+.++.+++.+.+ ..+++...+.+++++++.++.|.+
T Consensus 236 ~~~~~~~~~lGv~~G~~~~~f~---~~~~~~~~~~~~~~--~~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 236 GWEVLLFVALGVLCGAAAPQFL---RLLDASKNQFKRLP--VPLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8999999999999999999999 66666655543222 223345566777888887777765
Q ss_pred CCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccch
Q 003732 396 ECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFV 475 (799)
Q Consensus 396 ~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~ 475 (799)
.| .||+. ++.+++. ...+..++.++++|+++|++|+|+|+|||+|.
T Consensus 296 -----~g-------------~G~~~------------i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~ 341 (574)
T PRK01862 296 -----WG-------------NGYSV------------VNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFT 341 (574)
T ss_pred -----hc-------------CCHHH------------HHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchh
Confidence 12 22432 4444432 34456677788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh
Q 003732 476 PGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDA 555 (799)
Q Consensus 476 P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~ 555 (799)
|++++||++|+++|.+++.+.+....+|+.|+++||||+++|++|+|++++++++|+|++++.++|+|+++++|+++++.
T Consensus 342 P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 342 PTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887655556788899999999999999999999999999999999999999999999999998
Q ss_pred h-cccHHHHHHHhcCCCCCCCCchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEE
Q 003732 556 F-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIG 634 (799)
Q Consensus 556 ~-~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvG 634 (799)
+ ++++||.++++++. +.+.+.+++++++|+|+++ ..+++++++++|+.+.+++++++.+||+|+ +++++|
T Consensus 422 ~~~~~iy~~~~~~~~~----~~~~~~L~~~~V~dim~~~-~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~----~g~lvG 492 (574)
T PRK01862 422 LGTTSMYEITLRRHQD----EAERERLRTTQMRELIQPA-QTVVPPTASVADMTRVFLEYPVKYLYVVDD----DGRFRG 492 (574)
T ss_pred hCCCChHHHHHHhccc----cchhhHHhhCcHHHHhcCC-CceeCCCCCHHHHHHHHHhCCCceEEEEcC----CCeEEE
Confidence 8 89999999998764 2355678999999999998 899999999999999999999999999998 789999
Q ss_pred EEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecC
Q 003732 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (799)
Q Consensus 635 iItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~ 714 (799)
+|+++|+.+.+.++. . .. ..+++++|++++.++++
T Consensus 493 iVt~~dL~~~l~~~~-----~------------------------~~----------------~~~v~dim~~~~~~v~~ 527 (574)
T PRK01862 493 AVALKDITSDLLDKR-----D------------------------TT----------------DKTAADYAHTPFPLLTP 527 (574)
T ss_pred EEEHHHHHHHhhccc-----c------------------------cc----------------cchHHHhccCCCeeECC
Confidence 999999977443211 0 00 01234458899999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHHhhhhHhcc
Q 003732 715 DMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 715 ~~sL~~a~~lf~~~glr~lpVvd~~--g~lvGIITr~DLl~~~~~ 757 (799)
|+++.++.+.|.+++.+++||+|++ ++++|+||++|+++++.+
T Consensus 528 d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 528 DMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999876 589999999999998754
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=6e-68 Score=598.38 Aligned_cols=412 Identities=39% Similarity=0.695 Sum_probs=344.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHccccc
Q 003732 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (799)
Q Consensus 83 Gi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (799)
|+++|+++..++..++++.+++.... .|+.|+.+++++++++++++++++|.++|||||+||++++|.+.
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 70 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII 70 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc
Confidence 78999999999999999988776432 45667788888999999999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCcccccccccccccc-CChhhhhhHHHHhhhhhh
Q 003732 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVF-RSDRDRRDLVTCGCAAGV 241 (799)
Q Consensus 163 ~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f-~~~~~~r~lv~~G~aAgv 241 (799)
++.+++|+++.|++++++++++|+|+|||||++|+||++|++++| |++.+ .++.+||++++||+|||+
T Consensus 71 ~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAGl 139 (445)
T cd03684 71 RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAGV 139 (445)
T ss_pred cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999999986 44333 378899999999999999
Q ss_pred hhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHH
Q 003732 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (799)
Q Consensus 242 aaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (799)
||+|||||||++|++||+.++|+.+.+|++++++++|+++.+.+. .|+.++...|+++ ...+++..|+++
T Consensus 140 aAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~---------~~~~~~~~~f~~~-~~~~~~~~~l~~ 209 (445)
T cd03684 140 AVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLN---------PFGTGRLVLFEVE-YDRDWHYFELIP 209 (445)
T ss_pred HHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhc---------ccCCCCceEEecc-CCCCccHHHHHH
Confidence 999999999999999999999999999999999999998887653 2333444456554 245688899999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003732 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (799)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (799)
++++|++||++|.+|+ +.+.++.+++.+.+.+.++++++++++++++++.++.|+...
T Consensus 210 ~i~lGi~~Gl~g~lf~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~p~~~~------------------- 267 (445)
T cd03684 210 FILLGIFGGLYGAFFI---KANIKWARFRKKSLLKRYPVLEVLLVALITALISFPNPYTRL------------------- 267 (445)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHcc-------------------
Confidence 9999999999999999 555555554432221234677888899999999998887620
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHhhhc----------------cccc-chhHHHHHHHHHHHHHHHHHH
Q 003732 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSA----------------KTIH-EYSAQSLLTFLVMFYTLAVVT 464 (799)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~----------------~~~~-~~~~~~l~~~~~~k~~lt~~t 464 (799)
+| ++. ++.+|.. ..+. ..+...+++++++|+++|++|
T Consensus 268 ------------~g--~~~------------i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt 321 (445)
T cd03684 268 ------------DM--TEL------------LELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFT 321 (445)
T ss_pred ------------ch--hhH------------HHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 01 011 1111110 0001 123456777889999999999
Q ss_pred hcCccCcccchhHHHHHHHHHHHHHHHHHHhh---hc-----------CCCChHHHHHHHhhhhhhhhccchhHHHHHHH
Q 003732 465 FGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFY---KK-----------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMV 530 (799)
Q Consensus 465 ~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~---~~-----------~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~ 530 (799)
+|+|+|||+|+|++++||++|+++|.+++.+. |. ...+|+.||++||||+++|++|+|+|+++|++
T Consensus 322 ~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ 401 (445)
T cd03684 322 FGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMF 401 (445)
T ss_pred HcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheee
Confidence 99999999999999999999999999998653 21 24789999999999999999999999999999
Q ss_pred HHcCCcchhHHHHHHHHHHHHHHhhh-cccHHHHHHHhcCCCCC
Q 003732 531 EITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGVPLL 573 (799)
Q Consensus 531 E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~iy~~~l~~kg~p~l 573 (799)
|+||++++++|+|+++++|+++++.+ ++++||.+++.||+||+
T Consensus 402 ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 402 ELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred eccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 99999999999999999999999999 58999999999999986
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=3e-66 Score=582.08 Aligned_cols=415 Identities=31% Similarity=0.565 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHH
Q 003732 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (799)
Q Consensus 76 w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (799)
|++.+++|+++|+++.+++..++++.+++..... ..+++.+..|+.|+.+++++++++++++++++|.++|||||||++
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~ 80 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYS-LLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKT 80 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHH
Confidence 8889999999999999999999999988765532 223335556777888888889999999999999999999999999
Q ss_pred HHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHH
Q 003732 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (799)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~ 235 (799)
+++|.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|+.++|.. +.+ . ..++++.+||++++|
T Consensus 81 ~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~----~~~--~-~~~~~~~~rr~Li~~ 153 (426)
T cd03683 81 ILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLT----TFF--S-GIYENESRRMEMLAA 153 (426)
T ss_pred HHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhc----ccc--c-ccccCHHHHHHHHHh
Confidence 999988899999999999999999999999999999999999999999999732 110 0 014577889999999
Q ss_pred hhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeecc-CCCCCC
Q 003732 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDIS-DGQEDY 314 (799)
Q Consensus 236 G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~-~~~~~~ 314 (799)
|+|||+||+||||++|++|++|++.++|+.+.+|+++++|++++++.+.+.++..... ..+ . .|... ....++
T Consensus 154 GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~~ 227 (426)
T cd03683 154 ACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQE-TIT---A--LFKTTFFVDFPF 227 (426)
T ss_pred HhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccc---c--cccccccCCCCC
Confidence 9999999999999999999999999999999999999999999998876543211100 000 0 01111 123467
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc--ccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCC
Q 003732 315 SFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH--KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (799)
Q Consensus 315 ~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 392 (799)
+..++++++++|+++|++|++|++++....++++++.. ...+..+++++++++++++++.+ |
T Consensus 228 ~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p-------------- 291 (426)
T cd03683 228 DVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P-------------- 291 (426)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H--------------
Confidence 88999999999999999999999555544444333211 11123455666666666554321 1
Q ss_pred CCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcc
Q 003732 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (799)
Q Consensus 393 ~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG 472 (799)
...++++++.|+++|++|+|+|+|||
T Consensus 292 ------------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GG 317 (426)
T cd03683 292 ------------------------------------------------------FLTLFLFIVVKFVLTALAITLPVPAG 317 (426)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 23456678899999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhh-------cCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHH
Q 003732 473 QFVPGIMIGSTYGRLVGMFVVNFYK-------KLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLV 545 (799)
Q Consensus 473 ~f~P~l~iGa~~G~l~g~~~~~~~~-------~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~ 545 (799)
+|+|++++||++|+++|.+++.+.| ....+|+.||++||||+++|++|+|.+ ++|++|+||++++++|+|++
T Consensus 318 if~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t-~vlv~E~Tg~~~~llpl~ia 396 (426)
T cd03683 318 IFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSV-AVIIFELTGQISHLLPVLIA 396 (426)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHH-HheeeeecCCcchHHHHHHH
Confidence 9999999999999999999988775 345789999999999999999998665 57999999999999999999
Q ss_pred HHHHHHHHhhhcccHHHHHHHhcCCCCCCC
Q 003732 546 LLISKAVGDAFSEGLYEEQAHLRGVPLLES 575 (799)
Q Consensus 546 ~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~ 575 (799)
+++|+++++.+++|+||.+++.||+||+|+
T Consensus 397 ~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 397 VLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 999999999998899999999999999974
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=3.7e-65 Score=572.12 Aligned_cols=407 Identities=43% Similarity=0.716 Sum_probs=335.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHccccc
Q 003732 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (799)
Q Consensus 83 Gi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (799)
|+++|+++.+++..++++++++..+..+. .+++...|+.|+.+++++++++++++.+++|.++||||||+|+++||.+.
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI-PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc
Confidence 67899999999999999999988775432 33345567778888889999999999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhh
Q 003732 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (799)
Q Consensus 163 ~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgva 242 (799)
|+++++|+++.|++++++++++|+|+|||||++|+||++|+++++..+..++...+++++++++++||++++||+|||+|
T Consensus 80 ~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGla 159 (416)
T cd01036 80 PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVA 159 (416)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999999854433333335566677889999999999999999
Q ss_pred hhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCC-ceEEeeccCCCCCCchhhHHH
Q 003732 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSG-GFIIWDISDGQEDYSFEELLP 321 (799)
Q Consensus 243 aaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~-~~~~f~~~~~~~~~~~~~l~~ 321 (799)
|+|||||+|++|++||+.++|+.+.+|++++++.+++++.+.+.++........+..+ ..+.++++ ...+++..|+++
T Consensus 160 AaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 238 (416)
T cd01036 160 SAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFIP 238 (416)
T ss_pred hccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999988876543221100000000 00122232 345678899999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003732 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (799)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (799)
++++|++||++|.+|+++++...+++++..+.+.+++|++++++++++++++.+
T Consensus 239 ~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------- 292 (416)
T cd01036 239 TVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY-------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999955544444333221212345577778887777765432
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHH
Q 003732 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (799)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iG 481 (799)
...++++++.|+++|++|+|+|+|||+|+|++++|
T Consensus 293 ---------------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iG 327 (416)
T cd01036 293 ---------------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIG 327 (416)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 12345677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc--------CCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Q 003732 482 STYGRLVGMFVVNFYKK--------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVG 553 (799)
Q Consensus 482 a~~G~l~g~~~~~~~~~--------~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~ 553 (799)
|++|+++|.+++.++|. ..++|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|++++
T Consensus 328 A~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~ 407 (416)
T cd01036 328 AAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVA 407 (416)
T ss_pred HHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHH
Confidence 99999999999887653 2478999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHH
Q 003732 554 DAFSEGLYE 562 (799)
Q Consensus 554 ~~~~~~iy~ 562 (799)
+.+++|+||
T Consensus 408 ~~~~~siY~ 416 (416)
T cd01036 408 DAFCESLYH 416 (416)
T ss_pred HhhCCCCCC
Confidence 999999997
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=5.1e-58 Score=514.23 Aligned_cols=401 Identities=29% Similarity=0.503 Sum_probs=332.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHcccc
Q 003732 82 IGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (799)
Q Consensus 82 iGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (799)
+|+++|+++.+|+..+++++++++....... ..+..|+.++.++.+++++++++++++.|+++|+|+|++++.++|..
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~ 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA--NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC
Confidence 5899999999999999999999887532211 22223445566677788888889888999999999999999999854
Q ss_pred cccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhh
Q 003732 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (799)
Q Consensus 162 ~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgv 241 (799)
+...+++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. ++.++|++++||+|||+
T Consensus 79 --~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag~ 143 (402)
T cd01031 79 --PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAGL 143 (402)
T ss_pred --CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHhH
Confidence 34578999999999999999999999999999999999999987 3333 56789999999999999
Q ss_pred hhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHH
Q 003732 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (799)
Q Consensus 242 aaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (799)
+++||||++|++|++|++.++|+.+.+++.++++.+|+++.+.+ +++++ .|.++ ....++..|+++
T Consensus 144 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~~~~~--~~~~~-~~~~~~~~~l~~ 209 (402)
T cd01031 144 AAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF-----------FGLGP--VLSIP-PLPALPLKSYWL 209 (402)
T ss_pred HHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eEecC-CCCCCCHHHHHH
Confidence 99999999999999999988888889999999999998887653 23333 34444 245688999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003732 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (799)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (799)
++++|+++|++|++|+ +.+.+.++++.+.+ +..+++.+.+.+++++++.++.|+. .
T Consensus 210 ~illGv~~G~~g~~f~---~~~~~~~~~~~~~~-~~~~~~~~~l~gl~~~~~~~~~p~~--------------------~ 265 (402)
T cd01031 210 LLLLGIIAGLLGYLFN---RSLLKSQDLYRKLK-KLPRELRVLLPGLLIGPLGLLLPEA--------------------L 265 (402)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc-cCChhHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 55555555542221 2234555667778888888777765 1
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHH
Q 003732 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (799)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iG 481 (799)
| .| | +.++.+++ +++++..++.+++.|+++|++|+|+|+|||+|+|++++|
T Consensus 266 g-----------~G--~------------~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iG 316 (402)
T cd01031 266 G-----------GG--H------------GLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALG 316 (402)
T ss_pred C-----------CH--H------------HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2 12 2 23444443 345667788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhh-cccH
Q 003732 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGL 560 (799)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~i 560 (799)
|++|+++|++++.+++....+|+.||++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++
T Consensus 317 a~~G~~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~si 396 (402)
T cd01031 317 ALLGLLFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPI 396 (402)
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999887766789999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHH
Q 003732 561 YEEQAH 566 (799)
Q Consensus 561 y~~~l~ 566 (799)
||.+++
T Consensus 397 Y~~~l~ 402 (402)
T cd01031 397 YEALLE 402 (402)
T ss_pred hHHHhC
Confidence 998863
No 10
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=6.6e-58 Score=512.21 Aligned_cols=411 Identities=17% Similarity=0.258 Sum_probs=325.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccc--ccCCCCH
Q 003732 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTF-SIIQKSYFAGFLVYILINLILVFSSVYIITKFAP--AAAGSGI 150 (799)
Q Consensus 74 ~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p--~a~GsGi 150 (799)
++|++++++|+++|+.+.+|...+++++++.+.... ++.+.....++++...++++.+++++++..++.| ..+++|+
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~ 82 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAP 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCc
Confidence 456689999999999999999999998765432111 1111111112233455677777888888777765 4788999
Q ss_pred HHHHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhh
Q 003732 151 PEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR 230 (799)
Q Consensus 151 pev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r 230 (799)
+++++.++. ++.+++|+.+.|++++++++++|+|+|||||++|+||++|++++| +++ +++|||
T Consensus 83 ~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~r 145 (418)
T PRK01610 83 TDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEWK 145 (418)
T ss_pred HHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHHH
Confidence 999887765 366889999999999999999999999999999999999999997 333 567899
Q ss_pred hHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCC
Q 003732 231 DLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (799)
Q Consensus 231 ~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~ 310 (799)
.+++||+|||+||+||||++|++|++|++.+.++.+.+.++++++.+++++.+.+ ++.. ...|+++ .
T Consensus 146 ~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~-~~~~~i~-~ 212 (418)
T PRK01610 146 LWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSD-ALLYNVQ-L 212 (418)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCC-CCeeecC-C
Confidence 9999999999999999999999999999988787777777777777777666543 2221 1235555 3
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCC
Q 003732 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESD 390 (799)
Q Consensus 311 ~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 390 (799)
...++..+++.++++|+++|++|.+|+ +.+++.++++.+.+ ..+++.+.+.+++++++.++.|..
T Consensus 213 ~~~~~~~~l~~~i~lGii~Gl~g~~f~---~~~~~~~~~~~~~~--~~~~~~~~lggli~g~l~~~~p~~---------- 277 (418)
T PRK01610 213 SVTVQARDYALIISTGLLAGLCGPLLL---TLMNASHRGFVSLK--LAPPWQLALGGLIVGLLSLFTPAV---------- 277 (418)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcccc--cchhHHHHHHHHHHHHHHHHhhHH----------
Confidence 456788999999999999999999999 66666666553332 223455677788888888777765
Q ss_pred CCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccC
Q 003732 391 LDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVP 470 (799)
Q Consensus 391 ~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~ 470 (799)
.| .||+. ++.+++ .++....++.+++.|+++|++|+|+|.|
T Consensus 278 ----------~G-------------~G~~~------------i~~~~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~~ 318 (418)
T PRK01610 278 ----------WG-------------NGYSV------------VQSFLT----APPLLMLIAGIFLCKLLAVLASSGSGAP 318 (418)
T ss_pred ----------hC-------------CcHHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12 22433 333332 1234455666778999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHH
Q 003732 471 AGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (799)
Q Consensus 471 gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~ 550 (799)
||+|.|++++||++|.++|.+++.+++....++..||++||+|++++++|+|++++++++|+||++++++|+|+++++|+
T Consensus 319 GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~ 398 (418)
T PRK01610 319 GGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIAS 398 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHH
Confidence 99999999999999999999998776544555789999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-cccHHHHHHHhc
Q 003732 551 AVGDAF-SEGLYEEQAHLR 568 (799)
Q Consensus 551 ~v~~~~-~~~iy~~~l~~k 568 (799)
++++.+ ++++||.++..|
T Consensus 399 ~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 399 VISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHhCCCCchHHHHhcc
Confidence 999998 999999998754
No 11
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=5.6e-57 Score=510.54 Aligned_cols=411 Identities=27% Similarity=0.500 Sum_probs=327.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHH
Q 003732 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (799)
Q Consensus 77 ~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (799)
++++++|+++|+++.+|+..++++++++++...+ .....+..|..++.++.+++.++.++++++.|.++|+|+||++++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~ 80 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-VADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGA 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHH
Confidence 4688999999999999999999999998765332 111123334444556667777888899999999999999999999
Q ss_pred HcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHh
Q 003732 157 LNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCG 236 (799)
Q Consensus 157 l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G 236 (799)
+++.+... ..++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++||
T Consensus 81 l~~~~~~~--~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~~G 146 (438)
T PRK05277 81 LEGLRPVR--WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLAAG 146 (438)
T ss_pred HcCCCccc--hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHHHH
Confidence 99754322 25789999999999999999999999999999999999987 3332 2567899999999
Q ss_pred hhhhhhhhhcCccchhhhheeccccch--hhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCC
Q 003732 237 CAAGVAAAFRAPVGGVLFALEEVTSWW--RSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDY 314 (799)
Q Consensus 237 ~aAgvaaaF~APi~GvlFalE~~~~~~--~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~ 314 (799)
+|||+||+||||++|++|++|++.+.+ +.+.+++.++++++++++.+.+. +..+ .++++. ...+
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~-----------g~~~--~~~~~~-~~~~ 212 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN-----------GEQA--VIEVGK-FSAP 212 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc-----------CCCc--eEeccC-CCCC
Confidence 999999999999999999999887643 56667888888888888776532 2223 344442 2335
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccc-CCcee-eeehhHHHHHHHHHHhcccccccCCCCCCCCCC
Q 003732 315 SFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKK-GNRVK-IIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (799)
Q Consensus 315 ~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 392 (799)
+..+++.++++|+++|++|++|+ +.+.+.++++.+.+ .++++ ++.+.+++++++++.++.|..
T Consensus 213 ~~~~l~~~i~lGi~~G~~g~lf~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~------------ 277 (438)
T PRK05277 213 PLNTLWLFLLLGIIFGIFGVLFN---KLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA------------ 277 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh------------
Confidence 67889999999999999999999 66666655543222 12222 234456666677776665543
Q ss_pred CCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcc
Q 003732 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (799)
Q Consensus 393 ~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG 472 (799)
. |.+|+. ++..++ ++++...++.+++.|+++|++|+|+|+|||
T Consensus 278 --------~-------------g~G~~~------------i~~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG 320 (438)
T PRK05277 278 --------V-------------GGGFNL------------IPIALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGG 320 (438)
T ss_pred --------c-------------CChHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 1 222433 344433 235566677788999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Q 003732 473 QFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAV 552 (799)
Q Consensus 473 ~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v 552 (799)
+|.|++++||++|+++|.+++.+++....+|..|+++||+|+++|++|+|+|++++++|+||+++.++|+|+++++|+++
T Consensus 321 ~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v 400 (438)
T PRK05277 321 IFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLL 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999888776678999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-cccHHHHHHHhc
Q 003732 553 GDAF-SEGLYEEQAHLR 568 (799)
Q Consensus 553 ~~~~-~~~iy~~~l~~k 568 (799)
++.+ ++++||.++++.
T Consensus 401 ~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 401 AQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHhCCCChHHHHHHHH
Confidence 9999 799999999864
No 12
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-55 Score=490.42 Aligned_cols=411 Identities=28% Similarity=0.439 Sum_probs=321.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHhhhcccccCCCCHHHHH
Q 003732 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSV-YIITKFAPAAAGSGIPEIK 154 (799)
Q Consensus 76 w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~p~a~GsGipev~ 154 (799)
+....++|++.|+.....+....+.......... ..+.. .+++.+.....++++++ ++..++.|+++|+|+|+++
T Consensus 23 i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i 98 (443)
T COG0038 23 IGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS---AAQAP-GPWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQAI 98 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccccc-hhHHHHHHHHHHHHHHHHHHHHHhCccccCCChhHHH
Confidence 3467777777777777777666666544332111 01111 12233334445555555 7888899999999999999
Q ss_pred HHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHH
Q 003732 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVT 234 (799)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~ 234 (799)
+.+++. ++.+++|..++|+++++++++||+|+|||||++|+|+++|+.+++ |++. ++.|||.+++
T Consensus 99 ~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~Ll~ 163 (443)
T COG0038 99 EALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRILLA 163 (443)
T ss_pred HHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHH
Confidence 998874 456889999999999999999999999999999999999999997 4443 5789999999
Q ss_pred HhhhhhhhhhhcCccchhhhheeccccc-hhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCC
Q 003732 235 CGCAAGVAAAFRAPVGGVLFALEEVTSW-WRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQED 313 (799)
Q Consensus 235 ~G~aAgvaaaF~APi~GvlFalE~~~~~-~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~ 313 (799)
||+|||+||+|||||+|++|++|++... |+.+.++++++++.++..+...+ ++.+ ..+.+.. ...
T Consensus 164 ~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~-----------~~~~--~~~~~~~-~~~ 229 (443)
T COG0038 164 AGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-----------GGPH--FLLPIVT-TPH 229 (443)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc-----------CCCC--ceeeccc-cCc
Confidence 9999999999999999999999999887 88888888888887777776543 1212 2334432 466
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCC
Q 003732 314 YSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDS 393 (799)
Q Consensus 314 ~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~ 393 (799)
++.++++.++++|+++|++|.+|. +.+.+.++.+.+. +..+.+.+.+.+++++++.++.|..
T Consensus 230 ~~~~~~~~~~~lGii~G~~g~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~g~l~g~~~l~~P~~------------- 291 (443)
T COG0038 230 MSLWDLLLYLVLGIIAGLFGVLLS---RLLALSRRFFRRL--PLPPLLRPALGGLLVGALGLLFPEV------------- 291 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHhchhh-------------
Confidence 789999999999999999999999 5544443332222 2225667778888888888888766
Q ss_pred CCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCccc
Q 003732 394 GIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQ 473 (799)
Q Consensus 394 ~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~ 473 (799)
.| .|+++++ ..++ .++....++.+++.|+++|++|+|+|+|||+
T Consensus 292 -------lg-----------~G~~~~~--------------~~~~----~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGi 335 (443)
T COG0038 292 -------LG-----------NGYGLIQ--------------LALA----GEGGLLVLLLLFLLKLLATLLSYGSGAPGGI 335 (443)
T ss_pred -------hC-----------CCccHHH--------------HHHc----cCccHHHHHHHHHHHHHHHHHHHhcCCCcce
Confidence 12 2432322 1221 2223333677889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Q 003732 474 FVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVG 553 (799)
Q Consensus 474 f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~ 553 (799)
|.|++++||++|.++|.+++..++.....|..|+++||+|++++++|+|++++++++||||+++.++|+|+++++++.++
T Consensus 336 f~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~ 415 (443)
T COG0038 336 FAPSLFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVS 415 (443)
T ss_pred ehHHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999877555567889999999999999999999999999999999999999999999999999
Q ss_pred hhh-cccHHHHHHHhcCCCCC
Q 003732 554 DAF-SEGLYEEQAHLRGVPLL 573 (799)
Q Consensus 554 ~~~-~~~iy~~~l~~kg~p~l 573 (799)
+.. ++++|+...++++.+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~ 436 (443)
T COG0038 416 RLLGGRPIYTQLLARRGAPIL 436 (443)
T ss_pred HHhCCCcHHHHHHHhcCchhh
Confidence 988 89999999999988743
No 13
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=6.1e-55 Score=481.18 Aligned_cols=348 Identities=35% Similarity=0.593 Sum_probs=272.8
Q ss_pred HHHHHHHHhhhcccccCCCCHHHHHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccC
Q 003732 130 LVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGG 209 (799)
Q Consensus 130 ~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~ 209 (799)
++++++++++++.|.++|+||||+++.+++.+. .+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~--~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSG--RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 456778899999999999999999999998543 4899999999999999999999999999999999999999987
Q ss_pred ccccccccccccccCChhh-hhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhh
Q 003732 210 STKYHLRYRWLQVFRSDRD-RRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGW 288 (799)
Q Consensus 210 s~~~~~~~~~~~~f~~~~~-~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~ 288 (799)
+++. ++.+ +|.+++||+|||+||+|||||+|++|++|++.++++.+.++++++++.+++++.+.+..
T Consensus 78 ---------~~~~--~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~- 145 (355)
T PF00654_consen 78 ---------RFRL--SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFG- 145 (355)
T ss_dssp ---------HTT----CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHT-
T ss_pred ---------hhcc--cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcC-
Confidence 3333 3344 77799999999999999999999999999999999999999999999999999887543
Q ss_pred hcCCcccccCCCceEEee-ccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHH
Q 003732 289 CKSGKCGHFGSGGFIIWD-ISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVIS 367 (799)
Q Consensus 289 ~~~~~~~~f~~~~~~~f~-~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (799)
..+ .|+ ++ ....+++.++++++++|++||++|.+|+++++..++..+++. +.+.++++++.+.+
T Consensus 146 ----------~~~--~f~~~~-~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~--~~~~~~~l~~~i~g 210 (355)
T PF00654_consen 146 ----------NHP--IFGSVP-QLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK--RLKIPPILRPVIGG 210 (355)
T ss_dssp ----------SS---SS---T-T-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred ----------cCc--cccccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHH
Confidence 222 133 43 234789999999999999999999999954444444333321 22233456888999
Q ss_pred HHHHHHHhcccc--cccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccch
Q 003732 368 VITSVISFGLPL--LRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEY 445 (799)
Q Consensus 368 ~~~~~~~~~~p~--~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~ 445 (799)
++++++.++.|+ + .| .| |+. ++.+++++ +..+
T Consensus 211 l~~g~l~~~~p~~~~--------------------~g-----------~G--~~~------------i~~ll~~~-~~~~ 244 (355)
T PF00654_consen 211 LVIGLLAFFFPEGSV--------------------LG-----------SG--YEL------------IQSLLSGS-PPWF 244 (355)
T ss_dssp HHHHHHHHSSGG-SG--------------------SS-----------SS--TTH------------HHHHCTT-----S
T ss_pred HHHHHHHHHHhhhcc--------------------cC-----------Cc--HHH------------HHHHHcCC-cchh
Confidence 999999998886 4 11 12 343 44555422 1246
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHhhhhhhhhccchhH
Q 003732 446 SAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKL-NIEEGTYALLGAASFLGGSMRMTVS 524 (799)
Q Consensus 446 ~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~-~~~~~~~aliGaaa~l~g~~r~pis 524 (799)
+...++.++++|+++|++|+++|+|||+|+|++++||++|+++|.+++..++.. ..+|+.|+++||+|++++++|+|++
T Consensus 245 ~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt 324 (355)
T PF00654_consen 245 SLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLT 324 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHH
Confidence 788899999999999999999999999999999999999999999999986532 3489999999999999999999999
Q ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh
Q 003732 525 LCVIMVEITNNLKFLPLIMLVLLISKAVGD 554 (799)
Q Consensus 525 ~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~ 554 (799)
++++++|+||++++++|+|+++++|+.+++
T Consensus 325 ~~vl~~Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 325 AIVLVLELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHHHHHHHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987
No 14
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=3e-54 Score=481.19 Aligned_cols=383 Identities=25% Similarity=0.400 Sum_probs=294.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHccc---ccc
Q 003732 87 GLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGV---DIH 163 (799)
Q Consensus 87 Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~---~~~ 163 (799)
|+++..|+..+++++++++.... .+ +|+.++..+++. .++.+++.++.|.++||||||+++.+++. +.+
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~p~~~-~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~ 72 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA----TH---PWLPLLLTPAGF-ALIAWLTRRFFPGAAGSGIPQVIAALELPSAAARR 72 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH----hc---hHHHHHHHHHHH-HHHHHHHHhhCCCCCCCCHHHHHHHHccccccccc
Confidence 56788899999999887764421 11 233344445444 45556667789999999999999999853 356
Q ss_pred cchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhhh
Q 003732 164 GILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAA 243 (799)
Q Consensus 164 ~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgvaa 243 (799)
+++++|+++.|++++++++++|+|+|||||++|+|+++|++++| +++. +++.+||++++||+|||+||
T Consensus 73 ~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~-~~~~~~r~li~~GaaAGlaa 140 (390)
T cd01034 73 RLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPK-WGGLSERGLILAGGAAGLAA 140 (390)
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------Hccc-CchHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999997 3332 13688999999999999999
Q ss_pred hhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHHHH
Q 003732 244 AFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMA 323 (799)
Q Consensus 244 aF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~ 323 (799)
+||||++|++|++|++.++|+.+..++.++++.+++++.+.+ +++.+ .|+++. ...++..++++++
T Consensus 141 ~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~g~~~--~f~~~~-~~~~~~~~~~~~i 206 (390)
T cd01034 141 AFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV-----------LGNYP--YFGVAA-VALPLGEAWLLVL 206 (390)
T ss_pred HhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--ccCCCC-CCcCCHHHHHHHH
Confidence 999999999999999999998888888888888887776543 23322 233332 2235678899999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhc---ccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCC
Q 003732 324 VIGVIGGLLGALFNQLTLYMTSWRRNYLH---KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRP 400 (799)
Q Consensus 324 ~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~ 400 (799)
++|+++|++|.+|+ +.+.+..+++.+ .+...+.++.+.+.+++++++.++.|..
T Consensus 207 llGii~G~~g~lF~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~-------------------- 263 (390)
T cd01034 207 VCGVVGGLAGGLFA---RLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGL-------------------- 263 (390)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCc--------------------
Confidence 99999999999999 554444443321 1112223344555566666665543311
Q ss_pred CCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHH
Q 003732 401 PGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMI 480 (799)
Q Consensus 401 ~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~i 480 (799)
. .|.||+. ++.+++++. .. ...+++.|+++|++|+|+|+|||.|.|++++
T Consensus 264 ~------------~G~G~~~------------i~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~i 313 (390)
T cd01034 264 T------------FGTGYLQ------------ARAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAV 313 (390)
T ss_pred c------------ccCcHHH------------HHHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHH
Confidence 0 1222444 333333211 11 2235679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhh-ccc
Q 003732 481 GSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEG 559 (799)
Q Consensus 481 Ga~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~ 559 (799)
||++|++++.+++ ..+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ +++
T Consensus 314 Ga~~G~~~~~~~~------~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~ 387 (390)
T cd01034 314 GAGLGSLLAALLG------SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEP 387 (390)
T ss_pred HHHHHHHHHHHhc------CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998763 258999999999999999999999999999999999999999999999999999998 788
Q ss_pred HHH
Q 003732 560 LYE 562 (799)
Q Consensus 560 iy~ 562 (799)
+||
T Consensus 388 iY~ 390 (390)
T cd01034 388 LYH 390 (390)
T ss_pred CCC
Confidence 986
No 15
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=5.3e-54 Score=477.67 Aligned_cols=384 Identities=23% Similarity=0.307 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHcccc
Q 003732 83 GIGTGLAAVFINISVENFAGWKFSLTFSI-IQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (799)
Q Consensus 83 Gi~~Gl~a~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (799)
|+++|+.+..|+..+++++++.+...... .+.....++++....+++.+++++++..++ + ..|+|+||+++++++.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~-~-~~g~gi~~v~~~~~~~- 77 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLL-R-RKGKKLVSIKQAVRGK- 77 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHH-h-ccCCCcccHHHHhcCC-
Confidence 68899999999999999999887542211 111111122333344556666666554333 3 4799999999999873
Q ss_pred cccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhh
Q 003732 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (799)
Q Consensus 162 ~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgv 241 (799)
+.+++++.+.|.+++++++++|+|+|||||++|+|+++|+++++ ++|. ++++||++++||+|||+
T Consensus 78 --~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGl 142 (388)
T cd01033 78 --KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGL 142 (388)
T ss_pred --CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999987 3343 67889999999999999
Q ss_pred hhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHH
Q 003732 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (799)
Q Consensus 242 aaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (799)
||+||||++|++|++|++.++|+.+.++++++++.+++++.+.+ +++.+ .|.++. .++++.++++
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~f~~~~--~~~~~~~l~~ 207 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL-----------KGDHP--IYDIPP--MQLSTPLLIW 207 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------CCCCc--eeecCC--CCCCHHHHHH
Confidence 99999999999999999999899888888888888888877653 33333 345542 3345788999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003732 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (799)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (799)
++++|+++|++|.+|+ +.+.+.++++.+.+ +.++.+.+.+++++++.++.|.. .
T Consensus 208 ~illGi~~Gl~~~lf~---~~~~~~~~~~~~~~---~~~~~~~l~gl~~g~~~~~~p~~--------------------~ 261 (388)
T cd01033 208 ALLAGPVLGVVAAGFR---RLSQAARAKRPKGK---RILWQMPLAFLVIGLLSIFFPQI--------------------L 261 (388)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 66666665542211 12233556667777777777765 1
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHH
Q 003732 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (799)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iG 481 (799)
| .| |+ .++.+++. +++...++.+++.|+++|++|+|+|.|||+|.|++++|
T Consensus 262 G-----------~G--~~------------~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iG 312 (388)
T cd01033 262 G-----------NG--RA------------LAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALG 312 (388)
T ss_pred C-----------Cc--HH------------HHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHH
Confidence 2 12 32 24444432 34455677788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcC-CcchhHHHHHHHHHHHHHHhhh
Q 003732 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITN-NLKFLPLIMLVLLISKAVGDAF 556 (799)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg-~~~~l~pi~~~~~~a~~v~~~~ 556 (799)
|++|+++|++++...| ..++..|+++||||++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 313 a~~G~~~g~~~~~~~p--~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 313 ALLGALLGIVWNALLP--PLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999887653 56789999999999999999999999999999999 9999999999999999999865
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.3e-51 Score=460.28 Aligned_cols=383 Identities=28% Similarity=0.463 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHccccc
Q 003732 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (799)
Q Consensus 83 Gi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (799)
|+++|+++.+|+..+++.++++++...+.. .....+++++...+++.+++++++..+..| +.|+|+|+++..+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~-- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL-AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG-- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC--
Confidence 688999999999999999988876432111 001223444555666777777777777666 8999999999988753
Q ss_pred ccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhh
Q 003732 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (799)
Q Consensus 163 ~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgva 242 (799)
++.+++++++.|++++++++++|+|+|+|||++|+|+++|+++++ +++. ++.++|.+++||+|||++
T Consensus 77 ~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aagla 143 (383)
T cd00400 77 GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGIA 143 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999987 2332 567899999999999999
Q ss_pred hhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHHH
Q 003732 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPM 322 (799)
Q Consensus 243 aaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~ 322 (799)
|+||||++|++|++|++.++++.+.+++.++++.+++++.+.+. +..+ .|+++ ...+++..+++++
T Consensus 144 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~-----------~~~~--~~~~~-~~~~~~~~~~~~~ 209 (383)
T cd00400 144 AAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF-----------GAEP--AFGVP-LYDPLSLLELPLY 209 (383)
T ss_pred HhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCC--eeeCC-CCCcCCHHHHHHH
Confidence 99999999999999999999888888999999988888877542 2222 34444 2467889999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCC
Q 003732 323 AVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPG 402 (799)
Q Consensus 323 ~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g 402 (799)
+++|+++|++|.+|+ +.+.++++++.+. +.++++.+.+.+++++++.++.|+.. |
T Consensus 210 il~Gv~~g~~g~~f~---~~~~~~~~~~~~~--~~~~~~~~~i~gll~~~~~~~~p~~~--------------------g 264 (383)
T cd00400 210 LLLGLLAGLVGVLFV---RLLYKIERLFRRL--PIPPWLRPALGGLLLGLLGLFLPQVL--------------------G 264 (383)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHH--------------------c
Confidence 999999999999999 6666665554322 23355667778888888888877761 1
Q ss_pred CCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHH
Q 003732 403 MYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGS 482 (799)
Q Consensus 403 ~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa 482 (799)
.| |+. ++..+ +++++...++.+++.|++++++|+|+|+|||.|.|++++||
T Consensus 265 -----------~G--~~~------------~~~~~----~~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa 315 (383)
T cd00400 265 -----------SG--YGA------------ILLAL----AGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGA 315 (383)
T ss_pred -----------Cc--HHH------------HHHHH----cCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Confidence 12 332 22222 23455667777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHH
Q 003732 483 TYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (799)
Q Consensus 483 ~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~ 550 (799)
++|+++|++++.+++....+|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++||
T Consensus 316 ~~G~~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 316 ALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999999877666789999999999999999999999999999999999999999999998874
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.2e-48 Score=431.99 Aligned_cols=376 Identities=20% Similarity=0.302 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHc
Q 003732 79 ALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLN 158 (799)
Q Consensus 79 ~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~ 158 (799)
++++|+++|+++.+|+..+++++++++.. +|.. ..++ +.+++++++..++.|. .|+|++|+++.++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~-----------~~~~-~~~p-~~g~~i~~l~~~~~~~-~~~g~~~v~~~~~ 67 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH-----------PWLL-PFLP-LAGLLIGYLYQKFGKN-SEKGNNLIIEEIH 67 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHH-HHHH-HHHHHHHHHHHHhCcc-cCCChHHHHHHHH
Confidence 67999999999999999999998875521 1221 2223 3445556677776555 5789999988877
Q ss_pred ccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhh
Q 003732 159 GVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCA 238 (799)
Q Consensus 159 g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~a 238 (799)
+. .+.+++|..+.|++++.+++++|+|+|||||++|+|+++|+++++ ++|. ++.++|.+++||+|
T Consensus 68 ~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~a 132 (378)
T cd03682 68 GP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGIA 132 (378)
T ss_pred cc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHH
Confidence 53 245678899999999999999999999999999999999999997 3332 45678999999999
Q ss_pred hhhhhhhcCccchhhhheeccc-cchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchh
Q 003732 239 AGVAAAFRAPVGGVLFALEEVT-SWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFE 317 (799)
Q Consensus 239 AgvaaaF~APi~GvlFalE~~~-~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~ 317 (799)
||++|+||||++|++|++|++. +.++.+.+++.++++.+++.+.+.+ +.++ ..|.++ ...+++..
T Consensus 133 Aglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~------------~~~~-~~~~~~-~~~~~~~~ 198 (378)
T cd03682 133 AGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL------------GLEH-THYHIV-FIPTLDPL 198 (378)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------------CCCC-CccccC-CCCCCCHH
Confidence 9999999999999999999985 5555666677777777776665432 1111 123333 23567889
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCC
Q 003732 318 ELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIEC 397 (799)
Q Consensus 318 ~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~ 397 (799)
++++++++|+++|++|.+|+ +.+++.++++.+.+ ..+++.+.+.+++++++.++.+.-
T Consensus 199 ~l~~~i~~Gi~~gl~g~~f~---~~~~~~~~~~~~~~--~~~~~~~~iggl~~g~~~~~~~~~----------------- 256 (378)
T cd03682 199 LFVKVILAGIIFGLAGRLFA---ELLHFLKKLLKKRI--KNPYLRPFVGGLLIILLVYLLGSR----------------- 256 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHhcCC-----------------
Confidence 99999999999999999999 55555554442221 223455666677777766543221
Q ss_pred CCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCcccchhH
Q 003732 398 PRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPG 477 (799)
Q Consensus 398 p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~ 477 (799)
+ . .|++|+.+.. .+++. +.+ ...++.|+++|++|+|+|+|||+|.|+
T Consensus 257 -~---~----------~G~g~~~i~~-----------~~~~~----~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~ 303 (378)
T cd03682 257 -R---Y----------LGLGTPLIED-----------SFFGG----TVY----PYDWLLKLIFTVITLGAGFKGGEVTPL 303 (378)
T ss_pred -c---c----------ccCCHHHHHH-----------HHhcC----Cch----HHHHHHHHHHHHHHHhcCCCCceechH
Confidence 0 0 1333443221 12221 122 123579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccchhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhhc
Q 003732 478 IMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFS 557 (799)
Q Consensus 478 l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~ 557 (799)
+++||++|+++|+++ +.++..|+++||+|++++++|+|++++++++|+|| .+.++|+|+++++|+.+++ +
T Consensus 304 l~iGa~~G~~~~~~~-------~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~ 373 (378)
T cd03682 304 FFIGATLGNALAPIL-------GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--H 373 (378)
T ss_pred HHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--C
Confidence 999999999999886 45788999999999999999999999999999999 6788899999999999997 7
Q ss_pred ccHHH
Q 003732 558 EGLYE 562 (799)
Q Consensus 558 ~~iy~ 562 (799)
+++|+
T Consensus 374 ~~iy~ 378 (378)
T cd03682 374 TGIYG 378 (378)
T ss_pred CCCCC
Confidence 88884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=1e-45 Score=411.69 Aligned_cols=383 Identities=16% Similarity=0.216 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHH
Q 003732 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (799)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (799)
++.++.++++|+++|+++.+|...+++++++.|....+........+| +...++.+.+++++++.++ .|...|+ .|+
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~gGllvgll~~~-~~~~~G~-~~~ 86 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPL-WIIGMLTLTGIAVGLVIRF-SPGHAGP-DPA 86 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccch-HHHHHHHHHHHHHHHHHHH-cCCCCCC-hHH
Confidence 345679999999999999999999999999887543211111111122 2234456777888888655 4765566 566
Q ss_pred HHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003732 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (799)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~l 232 (799)
++...++ .++.+.+..|++++.+++++|+|+|||||++|+||+++++++| +++ +..++|++
T Consensus 87 ~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l 147 (414)
T PRK03655 87 TEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDW 147 (414)
T ss_pred HHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHH
Confidence 6666433 3556888999999999999999999999999999999999997 221 23457788
Q ss_pred HHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCC
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQE 312 (799)
Q Consensus 233 v~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~ 312 (799)
+.||+|||+||+||||++|++|++||+.+.+.... |...+.+.+++.+...+... .+ ++.+.++++ ...
T Consensus 148 ~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~~a~~v~~~-------~~--~~~~~~~~~-~~~ 216 (414)
T PRK03655 148 TILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAAAGALTTGL-------FF--HPHFSLPIA-HYG 216 (414)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH-------hC--CCCcceecC-CCC
Confidence 99999999999999999999999999977665422 32333333333333222111 11 122233443 234
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCCceeeeehhHHHHHHHHHHhcc-cccccCCCCCCCCC
Q 003732 313 DYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGL-PLLRKCSPCPESDL 391 (799)
Q Consensus 313 ~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~c~~~~~~~~ 391 (799)
..+..++++++++|++||++|.+|+ +...++++++.+.+.+ .+...+.+++++++.++. |..
T Consensus 217 ~~~~~~~~~~l~lgi~~gl~G~lf~---~~~~~~~~~~~~~~~p---~~~~~lgGl~vg~l~l~~~~~~----------- 279 (414)
T PRK03655 217 QMEMTDILSGAIVAAIAIAAGMVAV---WCLPRLHALMHRLKNP---VLVLGIGGFILGILGVIGGPLT----------- 279 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHhCCcc-----------
Confidence 4667889999999999999999999 6666666665433333 233456667777766542 221
Q ss_pred CCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhcCccCc
Q 003732 392 DSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPA 471 (799)
Q Consensus 392 ~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~g 471 (799)
. |.||+.+ +.+... .+++...++++++.|+++|++|+|+|+||
T Consensus 280 ---------~-------------g~Gy~~i------------~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~G 322 (414)
T PRK03655 280 ---------L-------------FKGLDEM------------QQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRG 322 (414)
T ss_pred ---------c-------------cCCHHHH------------HHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 1 2335543 333321 24566777788899999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhcc----chhHHHHHHHHHcCCcchhHHHHHHHH
Q 003732 472 GQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMR----MTVSLCVIMVEITNNLKFLPLIMLVLL 547 (799)
Q Consensus 472 G~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r----~pis~~vi~~E~Tg~~~~l~pi~~~~~ 547 (799)
|+|.|++++||++|..++.+++ ..++...+++||+|+++|++| +|+|+.||++||| +.|+|++++
T Consensus 323 GiF~PsL~iGA~~G~~~~~l~p------~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~ 391 (414)
T PRK03655 323 GRIFPAVFVGVALGLMLHAHVP------AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVM 391 (414)
T ss_pred ceehHHHHHHHHHHHHHHHhcc------CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHH
Confidence 9999999999999999998752 467888999999999999999 6999999999999 666777777
Q ss_pred HHHHHH
Q 003732 548 ISKAVG 553 (799)
Q Consensus 548 ~a~~v~ 553 (799)
++-++.
T Consensus 392 ~~~~~~ 397 (414)
T PRK03655 392 LPAWLL 397 (414)
T ss_pred HHHHHH
Confidence 666554
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.6e-16 Score=160.64 Aligned_cols=133 Identities=19% Similarity=0.349 Sum_probs=110.8
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003732 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (799)
Q Consensus 581 l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~ 660 (799)
+..++..|||+++ ++++++++++.++.++|++++.+.+||+|+ +.+++|+|+++|+.+.-.. .+
T Consensus 242 ~~~LtcadIMSrd-Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~----~~rl~GiVt~~dl~~~a~~------~p----- 305 (382)
T COG3448 242 MGELTCADIMSRD-VVTVSTDTSIDHARKLLQEHRIKALPVLDE----HRRLVGIVTQRDLLKHARP------SP----- 305 (382)
T ss_pred hccccHHHhcCcc-ceecCCcCChHHHHHHHHHcCccccccccc----ccceeeeeeHHHHhhccCc------ch-----
Confidence 4678899999999 999999999999999999999999999999 7899999999999653111 00
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003732 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (799)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g 740 (799)
..++. .-++++++++ |+++..|+.+|++..+..-.|.+.|++++||+|++|
T Consensus 306 -------~qrlr------~~~~~~vk~i----------------mt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g 356 (382)
T COG3448 306 -------FQRLR------FLRPPTVKGI----------------MTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAG 356 (382)
T ss_pred -------HHHhh------ccCCCccccc----------------ccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCC
Confidence 00110 1122344554 999999999999999999999999999999999999
Q ss_pred eEEEEEeHHhhhhHhccC
Q 003732 741 RVIGLITRKDLLIEDGED 758 (799)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (799)
+++||||..|++.+..+.
T Consensus 357 ~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 357 KLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cEEEEeeHHHHHHHHHHH
Confidence 999999999999976543
No 20
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.69 E-value=6.7e-16 Score=172.86 Aligned_cols=184 Identities=20% Similarity=0.190 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHH
Q 003732 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (799)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (799)
+..|...+++|+++|+++.+|+..+.+.++++.+..... ....+++ ...+.+++.+.+..+..|...|+|.++
T Consensus 199 ~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~gl~~~~~~~~~~~~~~G~G~~~ 271 (390)
T cd01034 199 GEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRF---RRRRPVL----FAALCGLALALIGLVSGGLTFGTGYLQ 271 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cchhhHH----HHHHHHHHHHHHHHhCCCccccCcHHH
Confidence 334568999999999999999999888876654321100 0111111 111223333333333445788999999
Q ss_pred HHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003732 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (799)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~l 232 (799)
++..+++.. ......++.|++.+++++++|.++|+|+|++++||++|+.+++ +++ ..+.+.+
T Consensus 272 i~~~~~~~~---~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~ 333 (390)
T cd01034 272 ARAALEGGG---GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGAL 333 (390)
T ss_pred HHHHHhCCC---cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHH
Confidence 999887632 3446778999999999999999999999999999999999987 222 2467899
Q ss_pred HHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 233 v~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
+.+||||++|+++|||+++++|++|++.+ .+.+.+.++++.+|..+.+.
T Consensus 334 a~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 334 VLLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 34556666666666666553
No 21
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=2.5e-16 Score=175.77 Aligned_cols=183 Identities=20% Similarity=0.162 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHH
Q 003732 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (799)
Q Consensus 75 ~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (799)
.+.+.+++|+++|+++.+|+..+.++++++. .... .++. ..+.+++.+. +.++.|+..|+|.+.++
T Consensus 204 ~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~~~~-~~~~----~~l~gl~~g~-~~~~~p~~~G~G~~~i~ 269 (388)
T cd01033 204 LLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------KGKR-ILWQ----MPLAFLVIGL-LSIFFPQILGNGRALAQ 269 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccc-hHHH----HHHHHHHHHH-HHHHHHHHhCCcHHHHH
Confidence 4557899999999999999999888776431 1111 1111 1123333343 34567999999999999
Q ss_pred HHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHH
Q 003732 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVT 234 (799)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~ 234 (799)
..+++..... .....++.|++.+.+|+++|.++|.|+|++.+||++|+.+++. ++.+.++.+.+.++.
T Consensus 270 ~~~~~~~~~~-~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~p~~~~~~~a~ 337 (388)
T cd01033 270 LAFSTTLTLS-LLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIV-----------WNALLPPLSIAAFAL 337 (388)
T ss_pred HHHcCCchHH-HHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH-----------HHHhCCcccHHHHHH
Confidence 8887643222 2367789999999999999999999999999999999999973 221112345678999
Q ss_pred HhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHh
Q 003732 235 CGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (799)
Q Consensus 235 ~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~ 285 (799)
|||||++|+++||||++++|++|++.. +.+.+.+.++++++|+.+.+.+
T Consensus 338 ~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 338 IGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999762 3466778888888888777643
No 22
>PRK05277 chloride channel protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=172.23 Aligned_cols=189 Identities=20% Similarity=0.240 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHH
Q 003732 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (799)
Q Consensus 74 ~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (799)
..+...+++|+++|+++.+|+..+.+++++..+. .......+ .....+.+++.+.+ .++.|+..|+|.+.+
T Consensus 215 ~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~i~gl~~g~l-~~~~p~~~g~G~~~i 285 (438)
T PRK05277 215 NTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----HGGNKKRW---VLMGGAVGGLCGLL-GLLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccccHHH---HHHHHHHHHHHHHH-HHHhhhhcCChHHHH
Confidence 3455789999999999999999988887654321 11111111 11223344444444 456799999999999
Q ss_pred HHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHH
Q 003732 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (799)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv 233 (799)
+..+++. .+-...+..++.|++.+.+++++|.++|.|+|++++||++|..+++..+. +++. ++.+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAA-------LFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-------HcCc--ccccHHHHH
Confidence 9988863 22222345679999999999999999999999999999999998863211 1111 234567899
Q ss_pred HHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 234 ~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
.+||||++|+++|||+++++|++|++.+ ...+.+.++++.+|..+.+.
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~~ 403 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQF 403 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 34555666667666666553
No 23
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.60 E-value=4.7e-15 Score=147.98 Aligned_cols=123 Identities=14% Similarity=0.300 Sum_probs=110.4
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003732 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (799)
Q Consensus 581 l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~ 660 (799)
..+.+++++|+++ ++++.+++|++++.+.+.+++.++.||+|+ ++++|+++.+|+..++.+..
T Consensus 169 iPk~~V~~~~s~~-~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-----dk~vGiit~~dI~~aia~g~----------- 231 (294)
T COG2524 169 IPKEKVKNLMSKK-LITVRPDDTLREAAKLFYEKGIRGAPVVDD-----DKIVGIITLSDIAKAIANGN----------- 231 (294)
T ss_pred cCcchhhhhccCC-ceEecCCccHHHHHHHHHHcCccCCceecC-----CceEEEEEHHHHHHHHHcCC-----------
Confidence 4567899999999 999999999999999999999999999998 59999999999998876533
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003732 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (799)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g 740 (799)
....++++|.++++++++|+.+.+|.++|..++..+|.|+|.+|
T Consensus 232 ------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g 275 (294)
T COG2524 232 ------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNG 275 (294)
T ss_pred ------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCC
Confidence 01234556999999999999999999999999999999999889
Q ss_pred eEEEEEeHHhhhhHhc
Q 003732 741 RVIGLITRKDLLIEDG 756 (799)
Q Consensus 741 ~lvGIITr~DLl~~~~ 756 (799)
+.+|||||+|+++.+.
T Consensus 276 kpvGiITrTDIL~~ia 291 (294)
T COG2524 276 KPVGIITRTDILTRIA 291 (294)
T ss_pred cEEEEEehHHHHHHhh
Confidence 9999999999998764
No 24
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.57 E-value=1.1e-14 Score=162.94 Aligned_cols=178 Identities=21% Similarity=0.223 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHH
Q 003732 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (799)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (799)
...+...+++|+++|+++.+|+....++++++... . . ++.+. .++.+++.+. +.++.|+..|+|.++
T Consensus 203 ~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~-----~---~-~~~~~---~~i~gll~~~-~~~~~p~~~g~G~~~ 269 (383)
T cd00400 203 LLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL-----P---I-PPWLR---PALGGLLLGL-LGLFLPQVLGSGYGA 269 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C---C-cHHHH---HHHHHHHHHH-HHHHHHHHHcCcHHH
Confidence 44556899999999999999999998887654321 0 1 11111 2233444444 355679999999999
Q ss_pred HHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003732 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (799)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~l 232 (799)
++..+++.. +-......++.|++.+.+++++|.++|.|+|++.+||++|..+++.. +. ++. .++.+.+.+
T Consensus 270 ~~~~~~~~~-~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~----~~---~~~--~~~~~~~~~ 339 (383)
T cd00400 270 ILLALAGEL-SLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLL----PA---LFP--GLVASPGAY 339 (383)
T ss_pred HHHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH----HH---hCC--cccCChHHH
Confidence 988877632 21223457899999999999999999999999999999999999731 11 111 134567899
Q ss_pred HHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHH
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSA 276 (799)
Q Consensus 233 v~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ 276 (799)
+.+||+|++++++|+|+++++|++|++.+ .+.+.+.++++.
T Consensus 340 ~~~G~aa~la~~~~aPlt~~vl~~Eltg~---~~~l~p~~ia~~ 380 (383)
T cd00400 340 ALVGMAALLAAVLRAPLTAILLVLELTGD---YSLLLPLMLAVV 380 (383)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 99999999999999999999999999874 234444444433
No 25
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.56 E-value=2.1e-14 Score=169.00 Aligned_cols=183 Identities=19% Similarity=0.219 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHH
Q 003732 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (799)
Q Consensus 75 ~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (799)
.+.+.+++|+++|+++.+|...+.+.++++... . .++++.. .+.+++.+.+ .++.|+..|+|.+.++
T Consensus 238 ~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~--------~-~~~~~~~---~~~gl~~g~l-~~~~p~~~g~G~~~i~ 304 (574)
T PRK01862 238 EVLLFVALGVLCGAAAPQFLRLLDASKNQFKRL--------P-VPLPVRL---ALGGLLVGVI-SVWVPEVWGNGYSVVN 304 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------C-CchhHHH---HHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 345789999999999999999888776543211 1 1111121 2333444443 4567999999999999
Q ss_pred HHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCCh-hhhhhHH
Q 003732 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSD-RDRRDLV 233 (799)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~-~~~r~lv 233 (799)
..+++.. .-..-...++.|++.+.+++++|.++|.++|++.+||++|+.+++.. +. ++.+. .+.-.++
T Consensus 305 ~~~~~~~-~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~----~~------~~~~~~~~~~~~a 373 (574)
T PRK01862 305 TILHAPW-TWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAM----HA------LWPGHTSAPFAYA 373 (574)
T ss_pred HHHcCCc-hHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHH----HH------hCCCcccchHHHH
Confidence 8887632 11122446789999999999999999999999999999999999731 10 11111 2233488
Q ss_pred HHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 234 ~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
.+||||.+|+++|||+++++|++|++.+ ...+.+.++++++|.++.+.
T Consensus 374 ~vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 374 MVGMGAFLAGATQAPLMAILMIFEMTLS---YQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999855 45566777777777766653
No 26
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=6.4e-14 Score=153.60 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=120.5
Q ss_pred cccHHHHHHHhcCCCC---CCCCchhhh---cccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCC
Q 003732 557 SEGLYEEQAHLRGVPL---LESRPKYKM---RQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNG 628 (799)
Q Consensus 557 ~~~iy~~~l~~kg~p~---l~~~~~~~l---~~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~ 628 (799)
..++|...+..+|.-. ........+ ..++++|+|++ + ++++++++++.++.+.|.+++++.+||+|+
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~-~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---- 243 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDE-IPHVSKTASLRDALLEITRKNLGMTVICDD---- 243 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCC-CeEECCCCCHHHHHHHHHhcCCCeEEEEcC----
Confidence 5678888888888765 444455556 78899999997 7 999999999999999999888878888887
Q ss_pred CceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCC
Q 003732 629 ERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS 708 (799)
Q Consensus 629 ~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~ 708 (799)
+++++|+|+.+|+.+.+.... . .. ..+++++|+++
T Consensus 244 ~g~lvGivt~~Dl~~~~~~~~----------~-------------------~~----------------~~~v~~im~~~ 278 (326)
T PRK10892 244 NMKIEGIFTDGDLRRVFDMGI----------D-------------------LR----------------QASIADVMTPG 278 (326)
T ss_pred CCcEEEEEecHHHHHHHhcCC----------C-------------------cc----------------cCCHHHhcCCC
Confidence 689999999999977543221 0 00 11234459999
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 709 p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
+.++.+++++.+++++|.+++.+++||+|+ ++++|+||++|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEeeC-CEEEEEEEhHHhHhc
Confidence 999999999999999999999999999985 899999999999875
No 27
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.54 E-value=8.1e-14 Score=152.48 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=122.7
Q ss_pred cccHHHHHHHhcCCCC---CCCCchhhhc---ccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC
Q 003732 557 SEGLYEEQAHLRGVPL---LESRPKYKMR---QMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE 629 (799)
Q Consensus 557 ~~~iy~~~l~~kg~p~---l~~~~~~~l~---~l~v~diM~~~-kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~ 629 (799)
..++|...+..+|.-. ...++...++ .++|+|+|.++ .++++++++++.++.+.|.+++...+||+|+ +
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~----~ 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA----Q 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC----C
Confidence 5578888888887755 5556666788 89999999873 2788999999999999999888899999998 7
Q ss_pred ceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCC
Q 003732 630 RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSP 709 (799)
Q Consensus 630 ~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p 709 (799)
++++|+|+.+|+.+.+.... .. ...+.++|++++
T Consensus 240 g~~iG~vt~~dl~~~~~~~~------------------------------~~----------------~~~v~~im~~~~ 273 (321)
T PRK11543 240 QQVQGVFTDGDLRRWLVGGG------------------------------AL----------------TTPVNEAMTRGG 273 (321)
T ss_pred CcEEEEecHHHHHHHHhCCC------------------------------Cc----------------CCcHHHhcCCCC
Confidence 89999999999987543211 00 011334599999
Q ss_pred eeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 710 YVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 710 ~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999874
No 28
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.54 E-value=5.5e-14 Score=158.19 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHH
Q 003732 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (799)
Q Consensus 74 ~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (799)
..+.+.+++|+++|+++.+|...+.+.+++.... ...+++. ..+.+++.+.+.. +.|+..|+|.+.+
T Consensus 219 ~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--------~~~~~~~----~~lggli~g~l~~-~~p~~~G~G~~~i 285 (418)
T PRK01610 219 RDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--------KLAPPWQ----LALGGLIVGLLSL-FTPAVWGNGYSVV 285 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------ccchhHH----HHHHHHHHHHHHH-HhhHHhCCcHHHH
Confidence 3455789999999999999999888776543211 1111211 1234444454443 4499999999999
Q ss_pred HHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhh-hhhH
Q 003732 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRD-RRDL 232 (799)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~-~r~l 232 (799)
+..+++.. .-.+..-.++.|++.+.+|+++|.++|.++|++.+||++|+.+++.. + ..+.+..+ .-.+
T Consensus 286 ~~~~~~~~-~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~----~------~~~~~~~~~~~~~ 354 (418)
T PRK01610 286 QSFLTAPP-LLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSL----G------LWLPDGEEITLLL 354 (418)
T ss_pred HHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH----H------HhCCCcccchHHH
Confidence 98887521 11112233689999999999999999999999999999999999732 1 01112222 3456
Q ss_pred HHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 233 v~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
..+||||.+|+++|||++++++++|++.++ ....+.++++++|+++.+.
T Consensus 355 a~vGmaA~laa~~~aPltaivl~~Eltg~~---~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 355 GLTGMATLLAATTHAPIMSTLMICEMTGEY---QLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCCH---hHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999998753 3455667777777776654
No 29
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.52 E-value=1.9e-14 Score=149.28 Aligned_cols=152 Identities=19% Similarity=0.249 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHHHhhhcccHHHHHHHhcCCCCCCCCchhhhcccchhhhccC--CceEEecCcccHHHHHHHHhhCCC
Q 003732 539 LPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKH 616 (799)
Q Consensus 539 l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~ 616 (799)
-+|++-+.-=.+.|+...|+.+|+.+++. . -++|+|+|.+ + ..++.+.+++++..++-++++|
T Consensus 157 ~lPvlstsYDTFTVAtmIN~Al~n~lIKk-d-------------I~~Vedi~~P~~~-~~yL~~~d~v~d~~~l~~kt~~ 221 (432)
T COG4109 157 GLPVLSTSYDTFTVATMINKALSNQLIKK-D-------------IITVEDIMTPLED-TSYLRETDTVEDWLDLVEKTGH 221 (432)
T ss_pred CCceEEecccceeHHHHHHHHHHHhhhhh-h-------------eeeHHHhcccccc-ceeccccccHHHHHHHHHHcCC
Confidence 35666666666778887889999988863 2 2789999994 6 8899999999999999999999
Q ss_pred CeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccc
Q 003732 617 NGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDME 696 (799)
Q Consensus 617 ~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~ 696 (799)
+.|||+|+ ..+++|+|+.+|+... + +..++
T Consensus 222 sRfPVvn~----~~kvvGvVt~rDv~~~---~--------------------------------~~t~i----------- 251 (432)
T COG4109 222 SRFPVVNR----SMKVVGVVTMRDVLDK---K--------------------------------PSTTI----------- 251 (432)
T ss_pred Cccceecc----cceEEEEEEehhhhcC---C--------------------------------CCccH-----------
Confidence 99999999 7899999999998442 1 11123
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhccCCc
Q 003732 697 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDST 760 (799)
Q Consensus 697 ~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~~~~ 760 (799)
..+|+++|++|.+.+++..+.+.|.-.++..+||+|++++++|+|||+|+++.+.....
T Consensus 252 -----eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 252 -----EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred -----HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence 33499999999999999999999999999999999999999999999999998764433
No 30
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.47 E-value=4.3e-13 Score=151.02 Aligned_cols=187 Identities=21% Similarity=0.214 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHH
Q 003732 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (799)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (799)
...+...+++|+++|+++.+|...+.++++++.+.. .. ..++. .. +.+++.+.+ .++.|+..|+|.+.
T Consensus 204 ~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~----~~---~~~~~-~~---l~gl~~~~~-~~~~p~~~g~G~~~ 271 (402)
T cd01031 204 LKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK----KL---PRELR-VL---LPGLLIGPL-GLLLPEALGGGHGL 271 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cC---ChhHH-HH---HHHHHHHHH-HHHHHHHhCCHHHH
Confidence 344557899999999999999999888876643210 01 11121 11 233333333 33479999999887
Q ss_pred HHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003732 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (799)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~l 232 (799)
++..+++. .+-..-...++.|++.+.+++++|.++|.+.|++.+||++|..+++.... +++ .+..+...+
T Consensus 272 i~~~~~~~-~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~~--~~~~~~~~~ 341 (402)
T cd01031 272 ILSLAGGN-FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQ-------LGP--IPISAPATF 341 (402)
T ss_pred HHHHHcCC-chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-------hcC--cccccHHHH
Confidence 88777652 22222234678999999999999999999999999999999999973211 111 124567889
Q ss_pred HHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 233 v~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
+.+||||.+++++|+|++++++++|++.+ ...+.+.++++++|..+.+.
T Consensus 342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~---~~~l~p~~ia~~ia~~v~~~ 390 (402)
T cd01031 342 AIAGMAAFFAAVVRAPITAIILVTEMTGN---FNLLLPLMVVCLVAYLVADL 390 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 34556666666666666543
No 31
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.47 E-value=5.7e-13 Score=148.60 Aligned_cols=172 Identities=17% Similarity=0.222 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc-ccccCCCCHH
Q 003732 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKF-APAAAGSGIP 151 (799)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~p~a~GsGip 151 (799)
...+.+.+++|+++|+++.+|+..+.++++++.+. ....|+ . +.+.+++.+.+.... .|...|.|.+
T Consensus 197 ~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~--------~~~~~~-~---~~iggl~~g~~~~~~~~~~~~G~g~~ 264 (378)
T cd03682 197 PLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR--------IKNPYL-R---PFVGGLLIILLVYLLGSRRYLGLGTP 264 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCcHH-H---HHHHHHHHHHHHHHhcCCccccCCHH
Confidence 33445789999999999999999998887664322 111122 1 123334444443332 3556799998
Q ss_pred HHHH-HHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhh
Q 003732 152 EIKG-YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR 230 (799)
Q Consensus 152 ev~~-~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r 230 (799)
+++. ..++ ..+...++.|++.+.+|+++|.++|.+.|++.+||++|+.+++ +++. +..
T Consensus 265 ~i~~~~~~~-----~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~ 323 (378)
T cd03682 265 LIEDSFFGG-----TVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVS 323 (378)
T ss_pred HHHHHHhcC-----CchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHH
Confidence 8877 4433 2345668999999999999999999999999999999999997 2221 234
Q ss_pred hHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 003732 231 DLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVV 281 (799)
Q Consensus 231 ~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v 281 (799)
.++.|||||.+++++|||++++++++|++.. ....+.++++.+|+++
T Consensus 324 ~~~~~Gmaa~laa~~raPlt~ivl~~Eltg~----~~~~p~~ia~~ia~~~ 370 (378)
T cd03682 324 LLAALGFVAVFAGATNTPLACIIMGIELFGA----ENAPYFFIACLVAYLF 370 (378)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhCc----cchHHHHHHHHHHHHH
Confidence 7899999999999999999999999999873 2334555555555444
No 32
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.7e-12 Score=120.23 Aligned_cols=117 Identities=17% Similarity=0.309 Sum_probs=93.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|.+++.+.+||+|+ +++++|+++++|+...+..+. .....
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~----~~~~~Giv~~~dl~~~~~~~~-~~~~~------------------- 58 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIVDE----NGKVVDVYSRFDVINLAKEGA-YNNLD------------------- 58 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEECC----CCeEEEEEeHHHHHHHHhcCc-ccccc-------------------
Confidence 788999999999999999999999999987 689999999999987654322 00000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.++.+ .+..++.|..++.++++++++.+++++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 59 --------~~~~~----------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 59 --------LTVGE----------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred --------CCHHH----------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 00110 01123346677889999999999999999999999999998899999999999976
No 33
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.5e-12 Score=116.59 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=84.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|.+++++++||+|+. +++++|+|+.+|+.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~---~~~~~Givt~~Dl~~~------------------------------ 49 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSR---KQQFVGMLTITDFILI------------------------------ 49 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCC---CCEEEEEEEHHHHhhh------------------------------
Confidence 7899999999999999999999999999861 3799999999999542
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIITr~DLl~ 753 (799)
+. +.++.+++++.++.++|.+.+.+++||+|++ |+++|+||++|+++
T Consensus 50 ------------------------------~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 50 ------------------------------LR--LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ------------------------------ee--eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 11 5789999999999999999999999999987 89999999999975
No 34
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.41 E-value=1e-12 Score=140.83 Aligned_cols=130 Identities=20% Similarity=0.349 Sum_probs=108.2
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003732 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (799)
Q Consensus 581 l~~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~ 658 (799)
+...+|+|+|++ + +++++.++++.++.+.+.+++|+.+||+++. .++++|+|+.+|++..+....
T Consensus 64 l~~~~V~diMtpr~~-i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~---~d~iiGiv~~kDll~~~~~~~--------- 130 (292)
T PRK15094 64 IADQRVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAHSRFPVISED---KDHIEGILMAKDLLPFMRSDA--------- 130 (292)
T ss_pred cCCCEEeEEccchHH-EEEEeCCCCHHHHHHHHHhcCCcEEEEecCC---CCcEEEEEEHHHHHhHhhccC---------
Confidence 456799999998 6 9999999999999999999999999999861 268999999999976432111
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003732 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (799)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~ 738 (799)
. ..++.++|. ++++|++++++.++++.|++.+.+.+||+|+
T Consensus 131 ----------------------~----------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe 171 (292)
T PRK15094 131 ----------------------E----------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE 171 (292)
T ss_pred ----------------------C----------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC
Confidence 0 011233464 4568999999999999999999999999999
Q ss_pred CCeEEEEEeHHhhhhHhccCCcch
Q 003732 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (799)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (799)
.|.++|+||++|+++.+.+++.++
T Consensus 172 ~G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 172 FGGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred CCCEEEEeEHHHHHHHHhCCCccc
Confidence 999999999999999998877654
No 35
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.41 E-value=1.4e-12 Score=121.06 Aligned_cols=123 Identities=24% Similarity=0.363 Sum_probs=103.3
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~ 661 (799)
..++++++|++| ++.+++++++.+++++|++.+++.+||+++ ++++|-|+.+++.+.+.++. +
T Consensus 63 ~~ita~~iM~sp-vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-----~k~VGsItE~~iv~~~le~~----e------- 125 (187)
T COG3620 63 TRITAKTIMHSP-VVSVSPDDSISDVVNLMRDKGISQLPVIEE-----DKVVGSITENDIVRALLEGM----E------- 125 (187)
T ss_pred ceEeHhhhccCC-eeEECchhhHHHHHHHHHHcCCccCceeeC-----CeeeeeecHHHHHHHHhccc----c-------
Confidence 468999999999 999999999999999999999999999997 89999999999988764431 0
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003732 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (799)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~ 741 (799)
.+. ...++++|..+.++|++++++..+.+++..+.- +.|++ +|+
T Consensus 126 ----------------------~i~-----------~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e-~G~ 169 (187)
T COG3620 126 ----------------------SIR-----------SLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE-NGK 169 (187)
T ss_pred ----------------------chh-----------hhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe-CCc
Confidence 011 223455699999999999999999999987754 77775 499
Q ss_pred EEEEEeHHhhhhHhcc
Q 003732 742 VIGLITRKDLLIEDGE 757 (799)
Q Consensus 742 lvGIITr~DLl~~~~~ 757 (799)
++||||+.|+++...+
T Consensus 170 ~vGIITk~DI~k~~~~ 185 (187)
T COG3620 170 VVGIITKADIMKLLAG 185 (187)
T ss_pred eEEEEeHHHHHHHHhc
Confidence 9999999999987643
No 36
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=2.9e-12 Score=117.13 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=90.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++++.+||+|+ +++++|+|+..|+.....+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~----~~~~~G~v~~~dl~~~~~~~~------------------------- 53 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDE----ENKVLGQVTLSDLLEIGPNDY------------------------- 53 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC----CCCEEEEEEHHHHHhhccccc-------------------------
Confidence 678899999999999999999999999997 689999999999966311100
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...+ +.++|..++.++++++++.+++++|.+++.+++||+|++|+++|+||++|+++
T Consensus 54 ------~~~~----------------v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 54 ------ETLK----------------VCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ------cccC----------------hhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 0001 23348888899999999999999999999999999998899999999999975
No 37
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=2.9e-12 Score=117.63 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=93.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.+.+.+.. ..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~----~g~~~G~vt~~dl~~~~~~~~----~~------------------- 55 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP----HGKLAGVLTKTDVVRQMGRCG----GP------------------- 55 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC----CCCEEEEEehHHHHHHHhhcC----CC-------------------
Confidence 678899999999999999999999999998 689999999999987543211 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ....+.++|++++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 56 -----~----------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 -----G----------------CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred -----c----------------ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 0 011234458889999999999999999999999999999998899999999999975
No 38
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.39 E-value=2e-12 Score=146.76 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=117.5
Q ss_pred ccHHHHHHHhcCCCCCCCC-----chhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceE
Q 003732 558 EGLYEEQAHLRGVPLLESR-----PKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLV 632 (799)
Q Consensus 558 ~~iy~~~l~~kg~p~l~~~-----~~~~l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~l 632 (799)
..+|..+.+..|+-.++.. ....++.++++++|.++ ++++++++++.++.+.|.+++++.+||+|+ ++++
T Consensus 58 ~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~-pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~----~gkl 132 (479)
T PRK07807 58 RRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDT-PVTLSPDDTVGDALALLPKRAHGAVVVVDE----EGRP 132 (479)
T ss_pred HHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccC-CeEECCCCCHHHHHHHHHhcCCceEEEECC----CCeE
Confidence 4455555555544443322 23457788999999999 999999999999999999999999999997 7899
Q ss_pred EEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeee
Q 003732 633 IGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712 (799)
Q Consensus 633 vGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV 712 (799)
+|+|+.+|+... .. ..+++++|++++.++
T Consensus 133 vGIVT~rDL~~~---~~------------------------------------------------~~~V~diMt~~~itV 161 (479)
T PRK07807 133 VGVVTEADCAGV---DR------------------------------------------------FTQVRDVMSTDLVTL 161 (479)
T ss_pred EEEEeHHHHhcC---cc------------------------------------------------CCCHHHhccCCceEE
Confidence 999999998321 00 012344599999999
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhccC
Q 003732 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (799)
Q Consensus 713 ~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~~ 758 (799)
++++++.+++++|.+++.+++||+|++|+++|+||++||++.....
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 9999999999999999999999999889999999999999966543
No 39
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.37 E-value=3.5e-12 Score=143.17 Aligned_cols=127 Identities=21% Similarity=0.313 Sum_probs=108.6
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003732 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (799)
Q Consensus 581 l~~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~ 658 (799)
+++.+|+|+|++ + +++++.+++++++.+.+.+++|+.+||+++. .++++|+|+.+|++..+.++
T Consensus 188 l~~~~v~diMtpr~~-v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~---~d~ivGiv~~kDll~~~~~~---------- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLD-IFALDIETSFSEIIPKIIENGYSRIPVYKET---IDNITGVLYIKDLLPHLNKK---------- 253 (408)
T ss_pred cCCCEeeeeCCchHh-EEEEECCCCHHHHHHHHHhCCCCEEEEEcCC---CCceEEEEEHHHHHhHhccC----------
Confidence 578899999997 6 9999999999999999999999999999862 36899999999997532110
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003732 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (799)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~ 738 (799)
..+++++|. +|++|++++++.++++.|++.+.+..+|+|+
T Consensus 254 ---------------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE 293 (408)
T TIGR03520 254 ---------------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE 293 (408)
T ss_pred ---------------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC
Confidence 012344464 6889999999999999999999999999999
Q ss_pred CCeEEEEEeHHhhhhHhccCCcc
Q 003732 739 ASRVIGLITRKDLLIEDGEDSTT 761 (799)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~ 761 (799)
.|.++|+||.+|++++..++..+
T Consensus 294 ~G~~~GiVT~eDileeivgei~d 316 (408)
T TIGR03520 294 YGGTSGLVTLEDIIEEIVGDISD 316 (408)
T ss_pred CCCEEEEEEHHHHHHHHhCCCCC
Confidence 99999999999999999877654
No 40
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=8.2e-12 Score=116.07 Aligned_cols=121 Identities=22% Similarity=0.403 Sum_probs=95.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+|+.+++...+.... .... . +
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~Giv~~~~l~~~~~~~~-~~~~------~----~-------- 60 (124)
T cd04600 4 VVTVTPDTSLEEAWALLRRHRIKALPVVDG----DRRLVGIVTQRDLLRHARPDG-RRPL------R----G-------- 60 (124)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCceeeEECC----CCCEEEEEEHHHHHhhhcccc-cchh------h----h--------
Confidence 788999999999999999999999999987 689999999999976543221 0000 0 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
..+ ......++.++|++.+.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 61 ---------~~~-------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 61 ---------RLR-------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred ---------hhh-------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 000 0011234556689999999999999999999999999999999988999999999999763
No 41
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.1e-11 Score=115.52 Aligned_cols=122 Identities=18% Similarity=0.319 Sum_probs=96.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-ceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~-~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (799)
+.+++++.++.++.+.|.+.+++.+||+|+ + ++++|+|+++|+...+.++..+.....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~----~~~~~~G~v~~~dl~~~~~~~~~~~~~~~----------------- 61 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDE----GTGKLVGIITATDILKYLGGGEKFNKIKT----------------- 61 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeC----CCCEEEEEEEHHHHHHHhhccchhccccc-----------------
Confidence 678899999999999999999999999987 5 899999999999876543220000000
Q ss_pred ccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
-.. ......++.++|.+.+.++++++++.++++.|++.+.+++||+|++|+++|+||++|+++
T Consensus 62 -----------~~~------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 62 -----------GNG------LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred -----------ccc------chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 000 000123455668888999999999999999999999999999998899999999999986
Q ss_pred H
Q 003732 754 E 754 (799)
Q Consensus 754 ~ 754 (799)
+
T Consensus 125 ~ 125 (125)
T cd04631 125 A 125 (125)
T ss_pred C
Confidence 3
No 42
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.1e-11 Score=112.84 Aligned_cols=108 Identities=23% Similarity=0.328 Sum_probs=92.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++++++++.+.+.+.+++.+||+|+ +++++|+|+..++...+.... .
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~----~~~~~G~v~~~~l~~~~~~~~-----~------------------- 54 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVDG----DGHLVGLLTRDDLIRALAEGG-----P------------------- 54 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEECC----CCcEEEEeeHHHHHHHHHhcC-----C-------------------
Confidence 678899999999999999888999999997 689999999999987653211 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
..++.++|++.+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+.+
T Consensus 55 -----------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 -----------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred -----------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 01233448888899999999999999999999999999998899999999999975
No 43
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.3e-11 Score=111.56 Aligned_cols=110 Identities=17% Similarity=0.304 Sum_probs=92.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-ceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~-~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (799)
+.++++++++.++++.|++.+++.+||+|+ + ++++|+++.+|+++.+.+.. ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~~G~v~~~dl~~~~~~~~-~~--------------------- 56 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKR----RESDAYGIVTMRDILKKVVAEG-RD--------------------- 56 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEEC----CCCcEEEEEehHHHHHHHHhCC-CC---------------------
Confidence 788999999999999999889999999997 5 89999999999987543321 00
Q ss_pred ccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.. ..++.++|++++.++++++++.+++++|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 57 ------~~----------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 57 ------PD----------------RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ------CC----------------ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 00 11233458888899999999999999999999999999998 99999999999976
No 44
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.4e-11 Score=110.35 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=91.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.+.+++++.+||+|+ +++++|+++.++++..+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~~~~~------------------------- 54 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVVDE----DGRLVGIVTSWDISKAVARDK------------------------- 54 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEECC----CCcEEEEEeHHHHHHHHhhCc-------------------------
Confidence 788999999999999999999999999988 689999999999976543211
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|+.+
T Consensus 55 ------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 55 ------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 0133447788899999999999999999999999999998899999999999964
No 45
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=1e-11 Score=117.65 Aligned_cols=125 Identities=22% Similarity=0.351 Sum_probs=95.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+........ ...+. .+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~~~~~Gvi~~~dl~~~~~~~~-~~~~~----~~------------- 61 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDNHISGLPVVDD----DGRLVGIVSEGDLLRRAELGT-ERRRA----RW------------- 61 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHcCCCCceEECC----CCCEEEEeeHHHHHHHhcccC-cchhh----hH-------------
Confidence 788999999999999999999999999997 689999999999986543221 00000 00
Q ss_pred cccCCCCCCCccccccCcc------ccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeH
Q 003732 675 VKPASSKGLSIDDIHLSSD------DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITR 748 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~------~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr 748 (799)
.++....+ ......+++++|++++.++.+++++.++++.|++.+.+++||+| +|+++|+||+
T Consensus 62 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~ 129 (135)
T cd04586 62 -----------LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSR 129 (135)
T ss_pred -----------HHHhcchHHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEh
Confidence 00000000 00112356677988999999999999999999999999999999 6999999999
Q ss_pred Hhhhh
Q 003732 749 KDLLI 753 (799)
Q Consensus 749 ~DLl~ 753 (799)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04586 130 ADLLR 134 (135)
T ss_pred Hhhhc
Confidence 99975
No 46
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.2e-11 Score=112.50 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=90.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++.+.+||+|+ +++++|+|+..|+......+. +
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~----~~~~~Givt~~dl~~~~~~~~----~-------------------- 54 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDE----DGDLVGVVSRKDLLKASIGGA----D-------------------- 54 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCCEEEEEEHHHHHHHHHcCC----C--------------------
Confidence 688999999999999999888899999997 689999999999987643211 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEecCC---CeEEEEEeHH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRK 749 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~---g~lvGIITr~ 749 (799)
....+++ ++|.+ .+.++++++++.+++++|.+.+.+++||+|++ ++++|+||++
T Consensus 55 -----~~~~~~~----------------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~ 113 (118)
T cd04617 55 -----LQKVPVG----------------VIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKT 113 (118)
T ss_pred -----ccCCCHH----------------HHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhh
Confidence 0001122 23764 67899999999999999999999999999987 6999999999
Q ss_pred hhhh
Q 003732 750 DLLI 753 (799)
Q Consensus 750 DLl~ 753 (799)
|+++
T Consensus 114 ~l~~ 117 (118)
T cd04617 114 NITK 117 (118)
T ss_pred heec
Confidence 9875
No 47
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.9e-11 Score=110.60 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=91.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
..++++++++.++.+.|.+.++..+||+|+ +++++|+++.+|+...+.+..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~dl~~~~~~~~------------------------- 54 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE----NGRLLGTVTDGDIRRALLKGL------------------------- 54 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC----CCCEEEEEEcHHHHHHHhcCC-------------------------
Confidence 567899999999999999888899999987 689999999999976543221
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.. ...+.++|++.+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|++.
T Consensus 55 -----~~----------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 55 -----SL----------------DDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -----Cc----------------CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 00 01233448888899999999999999999999999999998899999999999974
No 48
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.30 E-value=2.8e-11 Score=111.01 Aligned_cols=111 Identities=24% Similarity=0.365 Sum_probs=92.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+++.+||...+.+.. .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~dl~~~~~~~~-~----------------------- 54 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDR----DGGVVGIITLPDLLRALEADE-A----------------------- 54 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcC----CCCEEEEEEHHHHHHHHhccc-c-----------------------
Confidence 677889999999999999999999999998 689999999999987654321 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHHhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLL 752 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~--g~lvGIITr~DLl 752 (799)
.. ...++++|.+++.++.+++++.+++++|.+.+.+++||+|++ |+++|+||++|++
T Consensus 55 -----~~----------------~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 55 -----GE----------------PSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred -----cc----------------cccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 00 011334488899999999999999999999999999999987 7999999999997
Q ss_pred hH
Q 003732 753 IE 754 (799)
Q Consensus 753 ~~ 754 (799)
++
T Consensus 114 ~~ 115 (115)
T cd04593 114 LA 115 (115)
T ss_pred cC
Confidence 63
No 49
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=1.7e-11 Score=111.27 Aligned_cols=104 Identities=22% Similarity=0.332 Sum_probs=90.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++++++++.+.|.+++++.+||+|+ +++++|+|+.+++.... .
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~---~------------------------- 51 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVVDE----KNKVVGIVTSKDVAGKD---P------------------------- 51 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEECC----CCeEEEEecHHHHhccc---c-------------------------
Confidence 788999999999999999988999999997 68999999999995310 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
..+++++|++.+.++++++++.++.+.|.+.+.+.+||+|++|+++|++|++|+++
T Consensus 52 -----------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 -----------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -----------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 01234458888899999999999999999999999999998899999999999975
No 50
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.5e-11 Score=112.95 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=91.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-ceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~-~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (799)
+.++++++++.++.+.|.+.++..+||+|+ + ++++|+|+.+|+.+.+..+. -..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~----~~~~~~Giv~~~dl~~~~~~~~-~~~-------------------- 57 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEE----ESGEVIGILSQRRLVEFLWENA-RSF-------------------- 57 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEEeC----CCCcEEEEEEHHHHHHHHHHhH-Hhc--------------------
Confidence 678899999999999999888999999998 5 89999999999987654321 000
Q ss_pred ccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhh
Q 003732 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (799)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl 752 (799)
+..+. .........+.|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+.
T Consensus 58 ----------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 58 ----------PGLDP-----LYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ----------cchhh-----hhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 00000 00000112234788889999999999999999999999999999889999999999984
No 51
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.30 E-value=1.1e-11 Score=116.00 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=91.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|+++++..+||+|+ +++++|+++.+++...+..+. .
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~----~~~~~Gii~~~dl~~~~~~~~-~----------------------- 55 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDE----SGKILGMVTLGNLLSSLSSGK-V----------------------- 55 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCCEEEEEEHHHHHHHHHHhc-c-----------------------
Confidence 788999999999999999999999999988 689999999999987554322 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHH---------cCCCEEEEecCCCeEEEE
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQ---------LGLRHIFVVPRASRVIGL 745 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~---------~glr~lpVvd~~g~lvGI 745 (799)
+. ...+.++|++++.++.+++++.++.+++.+ .+.+++||+|++|+++||
T Consensus 56 -----~~----------------~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Gi 114 (124)
T cd04608 56 -----QP----------------SDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGI 114 (124)
T ss_pred -----CC----------------CCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEE
Confidence 00 112444599999999999999999996533 367889999988999999
Q ss_pred EeHHhhhhH
Q 003732 746 ITRKDLLIE 754 (799)
Q Consensus 746 ITr~DLl~~ 754 (799)
||++|++++
T Consensus 115 vt~~Dl~~~ 123 (124)
T cd04608 115 VTKIDLLSY 123 (124)
T ss_pred EehhHhhhh
Confidence 999999875
No 52
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=3.3e-11 Score=109.52 Aligned_cols=106 Identities=24% Similarity=0.399 Sum_probs=90.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+++++.++++.++.+.|++.+++.+||+|+ ++++|+++.+|+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~dl~~~~~~~~------------------------- 53 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEG-----GRVVGIISRRDVEKALRHGL------------------------- 53 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-----CEEEEEEEHHHHHHHHhccc-------------------------
Confidence 788999999999999999889999999986 79999999999977543211
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...++.++|++.+.++.+++++.+++++|.+.+.+++||+| +|+++|+||++|+++
T Consensus 54 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 ----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 01123445888999999999999999999999999999999 699999999999975
No 53
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=2.2e-11 Score=111.55 Aligned_cols=108 Identities=26% Similarity=0.381 Sum_probs=87.7
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~-~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (799)
+.++++++++.++.+.|.+.+ ...+||+|+ +++++|+|+.+|+.....+..
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~dl~~~~~~~~------------------------ 54 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDN----EGRYVGIISLADLRAIPTSQW------------------------ 54 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcC----CCcEEEEEEHHHHHHHHHhhc------------------------
Confidence 678899999999999987664 789999987 689999999999977543211
Q ss_pred ccccCCCCCCCccccccCccccccccccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhh
Q 003732 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (799)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DL 751 (799)
. ...+.++|++ .+.++.+++++.++++.|++.+.+++||+|++++++|+||++|+
T Consensus 55 -------~----------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di 111 (114)
T cd04801 55 -------A----------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADL 111 (114)
T ss_pred -------c----------------ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccce
Confidence 0 0112333653 35689999999999999999999999999988999999999998
Q ss_pred hh
Q 003732 752 LI 753 (799)
Q Consensus 752 l~ 753 (799)
++
T Consensus 112 ~~ 113 (114)
T cd04801 112 LR 113 (114)
T ss_pred ec
Confidence 75
No 54
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.30 E-value=2.5e-11 Score=110.65 Aligned_cols=110 Identities=23% Similarity=0.433 Sum_probs=93.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|++.+++.+||+|+ +++++|+|+++|+...+.+.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~G~v~~~~l~~~~~~~~------~------------------ 54 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDD----DGRLVGIVSLDDIREILFDPS------L------------------ 54 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECC----CCCEEEEEEHHHHHHHHhccc------c------------------
Confidence 678899999999999999999999999998 689999999999987543321 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecC-CCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR-ASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~-~g~lvGIITr~DLl~ 753 (799)
. ...++.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|++|++|++.
T Consensus 55 ----------~-----------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 55 ----------Y-----------DLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ----------c-----------ccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 0 012344558899999999999999999999999999999987 799999999999975
No 55
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.1e-11 Score=111.79 Aligned_cols=119 Identities=22% Similarity=0.354 Sum_probs=95.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+++.+++...+.... ..+. .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~G~v~~~~l~~~~~~~~--~~~~-----~------------- 58 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNE----DGKLVGLLTQRDLLRAALSSL--SDNG-----E------------- 58 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEECC----CCCEEEEEEHHHHHHHhcccc--cccc-----c-------------
Confidence 678899999999999999999999999987 689999999999987653311 0000 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. .. +.....++.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 59 -----~---~~--------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 59 -----E---SL--------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred -----c---cc--------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 0 00 001234566678899999999999999999999999999999998899999999999975
No 56
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.29 E-value=4.3e-11 Score=108.29 Aligned_cols=105 Identities=24% Similarity=0.367 Sum_probs=90.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.++.++.+.|.+++++.+||+|+ +++++|+++.+|+.......
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~dl~~~~~~~-------------------------- 53 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDK----DNKLLGIVSLESLEQAYKEA-------------------------- 53 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEcC----CCcEEEEEEHHHHHHHhhcC--------------------------
Confidence 677899999999999999989999999998 68999999999997643110
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.++.++|.+.+.++++++++.++.+.|.+.+.+++||+|++|+++|++|++|+++
T Consensus 54 ------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 ------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 0123347888899999999999999999999999999998899999999999975
No 57
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=4.5e-11 Score=108.82 Aligned_cols=110 Identities=14% Similarity=0.278 Sum_probs=92.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.++.++.+.+.+.+++.+||+|+ +++++|+++.+|+...+.... . .
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~Giv~~~~l~~~~~~~~-~-~--------------------- 55 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDD----GGRLVGIFSERDIVRKVALRG-A-S--------------------- 55 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECC----CCCEEEEEehHHHHHHHhhcC-C-C---------------------
Confidence 678899999999999999999999999987 689999999999987653321 0 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ...++.++|++++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 56 -----~----------------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 56 -----A----------------LDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -----c----------------cccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 0 012344558888899999999999999999999999999998 99999999999975
No 58
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6e-11 Score=108.12 Aligned_cols=109 Identities=17% Similarity=0.352 Sum_probs=92.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.+++++.+.|.+.+++.+||+|+ +++++|+|+.+|++..+.... .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~~l~~~~~~~~--~---------------------- 54 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVVDP----DERPIGIVTERDIVRAVAAGI--D---------------------- 54 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEECC----CCCEEEEeeHHHHHHHHhccC--C----------------------
Confidence 678899999999999999889999999998 689999999999977543321 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...++.++|++++.++.+++++.++.+.|.+.+...+||+|++|+++|++|++|+++
T Consensus 55 ----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 55 ----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 001233458888999999999999999999999999999998899999999999975
No 59
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.27 E-value=7e-11 Score=107.29 Aligned_cols=107 Identities=20% Similarity=0.361 Sum_probs=91.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~~l~~~~~~~~------------------------- 52 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVVDD-----GKLVGIVTLSDIAHAIARGL------------------------- 52 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEHHHHHHHHhccc-------------------------
Confidence 678899999999999999989999999986 79999999999987543221
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...++.++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 53 ----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 53 ----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 001234457888899999999999999999999999999998899999999999975
No 60
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.26 E-value=1.8e-11 Score=139.57 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=103.3
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhh-----CCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCC
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRT-----NKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~-----~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~ 656 (799)
...+++++|+++ +++++++++++++.+.+++ .+...+||+|+ +++++|+|+.+|++.. ..
T Consensus 129 ~e~tvg~iMt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~----~~~l~GvV~l~dLl~a---~~------- 193 (449)
T TIGR00400 129 SDDSAGRIMTIE-YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE----SKHLKGVLSIRDLILA---KP------- 193 (449)
T ss_pred CcchHHHhCcCc-eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC----CCeEEEEEEHHHHhcC---CC-------
Confidence 457899999998 9999999999999999975 23456788887 6899999999998431 00
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 003732 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (799)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVv 736 (799)
. ..++++|+++++++++++++.++.+.|++++...+||+
T Consensus 194 -------------------------~----------------~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVV 232 (449)
T TIGR00400 194 -------------------------E----------------EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVV 232 (449)
T ss_pred -------------------------C----------------CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEE
Confidence 0 12344599889999999999999999999999999999
Q ss_pred cCCCeEEEEEeHHhhhhHhccCCc
Q 003732 737 PRASRVIGLITRKDLLIEDGEDST 760 (799)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~ 760 (799)
|++|+++|+||++|+++.+.++..
T Consensus 233 D~~g~lvGiIt~~Dil~~l~~~~~ 256 (449)
T TIGR00400 233 DNEGRLVGIVTVDDIIDVIQSEAT 256 (449)
T ss_pred cCCCeEEEEEEHHHHHHHHHhhhH
Confidence 999999999999999998876543
No 61
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=3.6e-11 Score=109.85 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=91.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++.+.+||+|+ +++++|+|+.+++.+.+.... +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~G~v~~~~l~~~~~~~~-~~~~-------------------- 57 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDD----NGNLVGFLSEQDCLKQLLESS-YHCD-------------------- 57 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEECC----CCeEEEEeehHHHHHHhhhhh-hccC--------------------
Confidence 678899999999999998888889999987 689999999999986543211 0000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
....+.++|++++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 58 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 58 ----------------------GVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred ----------------------CCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 011244558888899999999999999999999999999998 99999999999975
No 62
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.26 E-value=2.9e-11 Score=137.11 Aligned_cols=122 Identities=17% Similarity=0.235 Sum_probs=104.7
Q ss_pred hhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003732 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (799)
Q Consensus 580 ~l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~ 659 (799)
.++.+++.++|.++ ++++++++++.++.+.|++.+++.+||+|+ ++++|+|+.+|+... ..
T Consensus 84 ~v~~VKv~eim~~~-pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-----gklvGIVT~rDL~~~---~~---------- 144 (475)
T TIGR01303 84 TVAFVKSRDLVLDT-PITLAPHDTVSDAMALIHKRAHGAAVVILE-----DRPVGLVTDSDLLGV---DR---------- 144 (475)
T ss_pred HHhhcchhhccccC-CeEECCCCCHHHHHHHHHhcCCeEEEEEEC-----CEEEEEEEHHHhhcC---CC----------
Confidence 46788899999998 999999999999999999999988888876 689999999998321 00
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003732 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (799)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~ 739 (799)
..+++++|+++++++++++++.++.++|.+++.+++||+|++
T Consensus 145 --------------------------------------~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~ 186 (475)
T TIGR01303 145 --------------------------------------FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD 186 (475)
T ss_pred --------------------------------------CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence 012344599999999999999999999999999999999988
Q ss_pred CeEEEEEeHHhhhhHhccC
Q 003732 740 SRVIGLITRKDLLIEDGED 758 (799)
Q Consensus 740 g~lvGIITr~DLl~~~~~~ 758 (799)
|+++|+||++||++.....
T Consensus 187 g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 187 GTLAGILTRTGALRATIYT 205 (475)
T ss_pred CeEEEEEEHHHHHHHHhCC
Confidence 9999999999999966543
No 63
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=5.5e-11 Score=105.94 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=84.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|.+++...+||+|+ +++++|+++.+|+...
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~----~~~~~Giv~~~dl~~~------------------------------ 48 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLDD----DGKLSGIITERDLIAK------------------------------ 48 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEECC----CCCEEEEEEHHHHhcC------------------------------
Confidence 788899999999999999899999999997 6899999999999431
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
..+.++++++++.++.++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 49 --------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 49 --------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 015789999999999999999999999999988999999999999763
No 64
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.26 E-value=7.1e-11 Score=107.45 Aligned_cols=107 Identities=27% Similarity=0.430 Sum_probs=89.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-ceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~-~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (799)
+++++++++++++.+.|.+.++..+||+|+ + ++++|+++..|+.....++. .
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~----~~~~~~G~v~~~~l~~~~~~~~--~--------------------- 55 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDG----DLDNIIGVVHVKDLLRALAEGE--E--------------------- 55 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECC----CCceEEEEEEHHHHHHHHHcCC--C---------------------
Confidence 788999999999999999988999999988 5 89999999999987654321 0
Q ss_pred ccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ..+.++| +++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 56 -------~-----------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 56 -------D-----------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -------c-----------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 0 0112224 45788999999999999999999999999998899999999999975
No 65
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.25 E-value=4.9e-11 Score=136.21 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=111.5
Q ss_pred cccHHHHHHHhcCCCCCCCCc--hhhhcc-cchhhhcc---CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCc
Q 003732 557 SEGLYEEQAHLRGVPLLESRP--KYKMRQ-MTAKEACG---AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGER 630 (799)
Q Consensus 557 ~~~iy~~~l~~kg~p~l~~~~--~~~l~~-l~v~diM~---~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~ 630 (799)
+..+--.+.+.+|+++.+... +...+. .+++++|. .+ .+++++++++.++.+.|.+++++.+||+|+. ..++
T Consensus 64 gdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~-~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~-~~~g 141 (502)
T PRK07107 64 DDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVS-DSNLTPDNTLADVLDLKEKTGHSTVAVTEDG-TAHG 141 (502)
T ss_pred hHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCC-CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC-CcCC
Confidence 344555567778887654321 222222 35788886 34 5689999999999999999999999999861 1147
Q ss_pred eEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCC--C
Q 003732 631 LVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--S 708 (799)
Q Consensus 631 ~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~ 708 (799)
+++|+|+..|+.... .. . ...++++|++ +
T Consensus 142 kLvGIVT~~DLr~~~--~~-------------------------------~----------------~~~V~dIMt~~~~ 172 (502)
T PRK07107 142 KLLGIVTSRDYRISR--MS-------------------------------L----------------DTKVKDFMTPFEK 172 (502)
T ss_pred EEEEEEEcHHhhccc--cC-------------------------------C----------------CCCHHHHhCCCCC
Confidence 999999999995310 00 0 1123344886 6
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 709 p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
++++++++++.+|+++|.+++++++||+|++++++|+||++|+++..
T Consensus 173 ~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 173 LVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred eEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 78899999999999999999999999999889999999999999854
No 66
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.5e-11 Score=107.79 Aligned_cols=108 Identities=18% Similarity=0.275 Sum_probs=91.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++++++++.+.+.+++++.+||+|+ +++++|+++.+|+........ .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~dl~~~~~~~~-~----------------------- 54 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDN----EEKLKGVVTFTDILDLDLFES-F----------------------- 54 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcC----CCCEEEEEehHHhHHHHhhcc-c-----------------------
Confidence 678899999999999999999999999987 689999999999976432211 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
....+.++|++++.++.+++++.++.+.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 55 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 55 ----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 001233448888899999999999999999999999999998 99999999999874
No 67
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.8e-11 Score=110.57 Aligned_cols=123 Identities=24% Similarity=0.330 Sum_probs=92.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|.+++...+||+|+ +++++|+++.+|+.....++........
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~----~~~~~Giv~~~dl~~~~~~~~~~~~~~~------------------ 60 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDE----KGKLIGNISASDLKGLLLSPDDLLLYRT------------------ 60 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECC----CCcEEEEEEHHHhhhhhcCcchhhcccc------------------
Confidence 788999999999999999989999999998 6899999999999875432210000000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ...++. ....+....|.+++.++++++++.++.++|.+.+.+++||+|++++++|+||+.|+++
T Consensus 61 -------~-~~~~~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 61 -------I-TFKELS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -------h-hhhhhh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 0 000000 0001122236778899999999999999999999999999998899999999999975
No 68
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.25 E-value=6.5e-11 Score=135.88 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=113.7
Q ss_pred hhcccHHHHHHHhcCCCCCCC-CchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEE
Q 003732 555 AFSEGLYEEQAHLRGVPLLES-RPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVI 633 (799)
Q Consensus 555 ~~~~~iy~~~l~~kg~p~l~~-~~~~~l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lv 633 (799)
++..-+++.++..+++-..+. ...+.+++++++|+|.++ +.++++++++.++.+.|.+++++.+||+|+ +++++
T Consensus 305 y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~----~~~~~ 379 (454)
T TIGR01137 305 YMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA-PVTVHPTETVGDAIEILREYGFDQLPVVTE----AGKVL 379 (454)
T ss_pred ccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCeEE
Confidence 445555667777766532222 234568899999999998 999999999999999999999999999997 68999
Q ss_pred EEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeec
Q 003732 634 GLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVP 713 (799)
Q Consensus 634 GiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~ 713 (799)
|+|+.+|+...+..+. . .. ...+.++|++++.+++
T Consensus 380 Givt~~dl~~~~~~~~-~----------------------------~~----------------~~~v~~im~~~~~~v~ 414 (454)
T TIGR01137 380 GSVTLRELLSALFAGK-A----------------------------NP----------------DDAVSKVMSKKFIQIG 414 (454)
T ss_pred EEEEHHHHHHHHhccC-C----------------------------Cc----------------CCCHHHhcCCCCeEEC
Confidence 9999999987543321 0 00 0123344888888999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 714 EDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 714 ~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
+++++.++.++|.+.+ .|||+++|+++|+||++|+++++
T Consensus 415 ~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 415 EGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 9999999999999864 35555569999999999999874
No 69
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.4e-11 Score=111.74 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=95.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|.+.+++.+||+|+ +++++|+++..++...+.... ...... . .....+
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~----~~~~~G~i~~~~l~~~~~~~~-~~~~~~---------~--~~~~~~ 66 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVDN----EGRVVGIVSEGDLIRKIYKGK-GLFYVT---------L--LYSVIF 66 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceECC----CCCEEEEEeHHHHHHHHhccC-Cccccc---------c--cccccc
Confidence 678899999999999999889999999998 689999999999987654321 000000 0 000000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.+ ++. .+.....++.++|++++..+.+++++.+++++|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 67 ~~---------~~~----~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 67 LD---------ESK----IKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred cc---------hHH----HHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00 000 0000123566779999999999999999999999999999999998 99999999999986
No 70
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=4.9e-11 Score=110.49 Aligned_cols=119 Identities=17% Similarity=0.296 Sum_probs=92.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|++++.|++....... +.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~~~~~-~~~~~~------------------ 59 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQK----AGELIGIITRRDIIRAGSVRT-SVEDQQ------------------ 59 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECC----CCcEEEEEEcHHHHhhccccc-cccchh------------------
Confidence 678899999999999999989999999987 799999999999976421100 000000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. . ......++.++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|++|++|+++
T Consensus 60 ------~---------~--~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 60 ------R---------T--QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ------h---------h--hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 0 0 000112344558888999999999999999999999999999998899999999999976
No 71
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.24 E-value=8.8e-11 Score=105.88 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=88.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+++++++.++.++.+.|.+.++..+||+|+ +++++|+++..|+......
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~----~g~~~Giv~~~dl~~~~~~--------------------------- 51 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDA----DGQPLGFVTRREAARASGG--------------------------- 51 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECC----CCCEEEEEeHHHHHHhccc---------------------------
Confidence 678899999999999999888899999987 6899999999999653100
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
+ +.++|.+.+.++.+++++.++++.|.+.+...+||+|++++++|+||++|+++
T Consensus 52 ---------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 ---------C----------------CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred ---------c----------------hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1 22337777788999999999999999999999999998899999999999975
No 72
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.24 E-value=9.9e-11 Score=132.70 Aligned_cols=182 Identities=23% Similarity=0.240 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHH
Q 003732 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (799)
Q Consensus 76 w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (799)
....+++|++.|+.+.++........+++. + ...++.+.. .+.++++ .+...+.|+..|.|...++.
T Consensus 235 ~~~~~~lGii~G~~g~~~~~~~~~~~~~~~--------~-~~~~~~~~~---~~~g~l~-g~~~l~~P~~lg~G~~~~~~ 301 (443)
T COG0038 235 LLLYLVLGIIAGLFGVLLSRLLALSRRFFR--------R-LPLPPLLRP---ALGGLLV-GALGLLFPEVLGNGYGLIQL 301 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c-CcchHHHHH---HHHHHHH-HHHHHhchhhhCCCccHHHH
Confidence 346789999999999888877755432221 1 111112221 2233333 34566789999999999988
Q ss_pred HHcccccccch-hHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCC-hhhhhhHH
Q 003732 156 YLNGVDIHGIL-LFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRS-DRDRRDLV 233 (799)
Q Consensus 156 ~l~g~~~~~~l-~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~-~~~~r~lv 233 (799)
..++.- ... ..-.++.|++.+.+|++||.++|...|++.+|+++|..+++.... .+.. ..+.-.++
T Consensus 302 ~~~~~~--~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~----------~~~~~~~~~~~~a 369 (443)
T COG0038 302 ALAGEG--GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGL----------LFPPSILEPGLFA 369 (443)
T ss_pred HHccCc--cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHh----------hcCccccchHHHH
Confidence 887632 222 356789999999999999999999999999999999999973211 1111 33445799
Q ss_pred HHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHHh
Q 003732 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (799)
Q Consensus 234 ~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~ 285 (799)
.+||+|.++++-|+|++++++++|++.+ .++.+..+.++++++.+.+..
T Consensus 370 l~Gm~a~la~~~~aPlta~vlv~EmTg~---~~~~l~ll~a~~ia~~~~~~~ 418 (443)
T COG0038 370 LLGMAAFLAATTRAPLTAIVLVLEMTGN---YQLLLPLLIACLIAYLVSRLL 418 (443)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCC---cchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 456778888888888877654
No 73
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=9.9e-11 Score=106.84 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=91.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.+.+.+++.+||+|+ +++++|+++.+|+...+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~----~~~~~G~v~~~dl~~~~~~~~~~----------------------- 55 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD----KKRLVGIITRYDVLSYALESEEL----------------------- 55 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC----CCCEEEEEEHHHHHHhhhhhhhh-----------------------
Confidence 567889999999999999999999999998 68999999999997643221100
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
....+.++|.+++.++.+++++.++++.|.+.+..++||+|++|+++|+||++|+++
T Consensus 56 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 ----------------------KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred ----------------------cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 001234458888999999999999999999999999999998899999999999975
No 74
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.23 E-value=8.9e-11 Score=130.05 Aligned_cols=185 Identities=24% Similarity=0.256 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccc--cCCCCHHH
Q 003732 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPA--AAGSGIPE 152 (799)
Q Consensus 75 ~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~--a~GsGipe 152 (799)
.+.+.+++|+++|+++.+|.....++.+++.+.. ......++ ..++.+++.+ ++.++.|+ ..|+|...
T Consensus 163 ~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~~~~l----~~~i~gl~~g-~l~~~~p~~~~~g~G~~~ 232 (355)
T PF00654_consen 163 ELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-----RLKIPPIL----RPVIGGLVIG-LLAFFFPEGSVLGSGYEL 232 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHH----HHHHHHHHHH-HHHHSSGG-SGSSSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccccchHH----HHHHHHHHHH-HHHHHHhhhcccCCcHHH
Confidence 3458899999999999999999998887654331 00001111 2223334444 34566688 99999999
Q ss_pred HHHHHcccc--cccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCC--hhh
Q 003732 153 IKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRS--DRD 228 (799)
Q Consensus 153 v~~~l~g~~--~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~--~~~ 228 (799)
++..+++.. ..-....-..+.|++.+.+++++|.++|...|++.+|+++|..++... +. .+.+ ..+
T Consensus 233 i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~----~~------~~~~~~~~~ 302 (355)
T PF00654_consen 233 IQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALL----GS------FFPGISSVD 302 (355)
T ss_dssp HHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHH----HH------H-GGG-T-S
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHH----Hh------hCCCcCCCc
Confidence 999887631 111222445789999999999999999999999999999999999732 11 1111 114
Q ss_pred hhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHH
Q 003732 229 RRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (799)
Q Consensus 229 ~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~ 282 (799)
...+..+||+|.++++.|+|++.+++.+|++.+ .+...+.++++++|..+.
T Consensus 303 ~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~~~a~~v~ 353 (355)
T PF00654_consen 303 PGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAVAVAYLVA 353 (355)
T ss_dssp HHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999985 345566666666666554
No 75
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.23 E-value=1.6e-10 Score=104.90 Aligned_cols=108 Identities=28% Similarity=0.487 Sum_probs=91.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+......+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~~l~~~~~~~~--~---------------------- 53 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-----GRPLGIVTERDILRLLASGP--D---------------------- 53 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEeHHHHHHHHhcCC--C----------------------
Confidence 678899999999999999988999999986 79999999999987543211 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
....+.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 ----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 ----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 011233448888999999999999999999999999999998899999999999975
No 76
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.22 E-value=1.2e-10 Score=107.56 Aligned_cols=119 Identities=20% Similarity=0.340 Sum_probs=93.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.++.++.+.|.+.+++.+||+|+ ++++|++++.++........ ....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~i~~~~l~~~~~~~~--~~~~------------------- 56 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVDR-----GKLVGIVTDRDLKLASPSKA--TTLD------------------- 56 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEecC-----CeEEEEEeHHHHHHhhhccc--cccc-------------------
Confidence 678899999999999999999999999986 79999999999977543211 0000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
..+... .....++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 57 ----------~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 57 ----------IWELYY----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ----------chhhhh----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 000000 00123455668889999999999999999999999999999998899999999999976
No 77
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=9.3e-11 Score=107.47 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=90.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|++.+.+.+||+|+ +++++|+++.+|+...+.... ..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~Giv~~~dl~~~~~~~~--~~~-------------------- 56 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDK----EGKYVGTISLTDILWKLKGLE--NLD-------------------- 56 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECC----CCcEEEEEeHHHHHHHhhccC--chh--------------------
Confidence 788999999999999999999999999997 689999999999987543211 000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
..++ ....+.++|++.+.++.+++++.++++.|.+.+ .+||+|++|+++|+||++|++++
T Consensus 57 ----------~~~~--------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 57 ----------LERL--------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred ----------HHHH--------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 0000 011234458888999999999999999998865 59999988999999999999763
No 78
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.22 E-value=1.5e-10 Score=105.63 Aligned_cols=110 Identities=16% Similarity=0.300 Sum_probs=90.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++++++++.+.|.+++.+.+||+|+ ++++|+|+.+|+...+.... ...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~dl~~~~~~~~-~~~--------------------- 55 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVMDG-----NKLVGIFTSKDIALRVVAQG-LDP--------------------- 55 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-----CEEEEEEEhHHHHHHHHhcC-CCc---------------------
Confidence 678899999999999998888889999986 79999999999974332111 000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...++.++|++++.++.+++++.++++.|.+.+.+++||+|++++++|+||++|+++
T Consensus 56 ----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 56 ----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 001234458888999999999999999999999999999998899999999999975
No 79
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=9.5e-11 Score=105.36 Aligned_cols=102 Identities=12% Similarity=0.288 Sum_probs=87.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|++.+++.+||+|+ ++++|+++.+++.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~Giv~~~~l~~~~---~------------------------- 49 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVVED-----GKLVGIITSRDVRRAH---P------------------------- 49 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEehHHhhccc---c-------------------------
Confidence 677899999999999999888899999975 7999999999995421 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...+.++|++.+.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++.
T Consensus 50 -----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 50 -----------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred -----------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 00133458888999999999999999999999999999998 99999999999973
No 80
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.22 E-value=1.5e-10 Score=105.04 Aligned_cols=108 Identities=22% Similarity=0.439 Sum_probs=91.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++.+.+||+|+ ++++|+++++|+.....+.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~-~----------------------- 53 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD-----GRLVGIVTLADIRRVPAEGR-E----------------------- 53 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEeeC-----CeEEEEEEHHHHHHHHhcCc-c-----------------------
Confidence 678899999999999999888899999986 79999999999976543211 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ..++.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 -----------~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 54 -----------A-----------TVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -----------c-----------ccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 0 01233447888999999999999999999999999999998899999999999975
No 81
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.22 E-value=1.1e-10 Score=106.52 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=92.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.+.+.+++.+||+|+ +++++|+++..++...+.+.. ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~~i~~~~~~~~--~~--------------------- 56 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDE----DGRLVGIFTDGDLRRALEKGL--DI--------------------- 56 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEcC----CCCEEEEechHHHHHHHhccC--cc---------------------
Confidence 677889999999999998888899999998 689999999999988664322 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ...+.++|++.+.++.+++++.++.+.|++.+...+||+|++++++|+||++|+++
T Consensus 57 ------~----------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 57 ------L----------------TLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred ------c----------------cCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 0 01234458888899999999999999999999999999998899999999999975
No 82
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=1.4e-10 Score=106.40 Aligned_cols=109 Identities=17% Similarity=0.300 Sum_probs=87.4
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~-~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (799)
+.+++++.++.++.+.|.+++ +..+||+|+ ++++|+++..|+...+..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~-~~--------------------- 55 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVEK-----GRLLGIFTERDIVRLTAIGK-DL--------------------- 55 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-----CcEEEEEeHHHHHHHHhcCC-Cc---------------------
Confidence 678899999999999998877 566777664 78999999999987543321 00
Q ss_pred ccccCCCCCCCccccccCccccccccccccccCCCCeeecCC--CCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhh
Q 003732 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPED--MSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (799)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~--~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DL 751 (799)
....+.++|.+++.++.++ +++.++++.|.+.+...+||+|++|+++|+||++|+
T Consensus 56 -----------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl 112 (115)
T cd04620 56 -----------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESI 112 (115)
T ss_pred -----------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHh
Confidence 0012334487888889887 789999999999999999999988999999999999
Q ss_pred hh
Q 003732 752 LI 753 (799)
Q Consensus 752 l~ 753 (799)
++
T Consensus 113 ~~ 114 (115)
T cd04620 113 RQ 114 (115)
T ss_pred hc
Confidence 86
No 83
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=1.9e-10 Score=104.94 Aligned_cols=110 Identities=19% Similarity=0.320 Sum_probs=90.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++++.+||+|+ ++++|+++++|+...+..+. ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~i~~~~l~~~~~~~~-----~~------------------ 54 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN-----DRLVGIVTDRDIVVRAVAEG-----RD------------------ 54 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEhHHHHHHHhhcc-----CC------------------
Confidence 778899999999999999999999999986 89999999999863211111 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ...+++++|++.+.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 55 -----~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 55 -----P----------------DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred -----c----------------ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 0 001234458888999999999999999999999999999998899999999999975
No 84
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=1.2e-10 Score=110.67 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=94.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+|+..|+...+.... ...... ..+ . +
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~----~~~~~Giv~~~dl~~~~~~~~-~~~~~~--~~~--------~---~ 64 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDD----NGKPVGVITYRDLAFAEFEDN-ERGLPK--KSI--------K---M 64 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEECC----CCCEEEEEeHHHHHHHhhccc-ccccch--hhh--------h---h
Confidence 678899999999999999999999999998 799999999999987654221 000000 000 0 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
....... .+.. ......+++++|.+++..+.+++++.++++.|.+.+.+++||+|+ |+++|+||+.|+++
T Consensus 65 ~~~~~~~----~~~~----~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 65 KRKAGQK----RYRY----VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred hhhcccc----cccc----cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 0000000 0000 000122455668888899999999999999999999999999998 99999999999976
No 85
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.3e-10 Score=108.86 Aligned_cols=124 Identities=16% Similarity=0.262 Sum_probs=93.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+++++|+...+.... ...... ..
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~G~it~~dl~~~~~~~~-~~~~~~--~~-------------- 61 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDD----NGKLTGIVTRHDIVDFVVRDR-DKARTG--DR-------------- 61 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECC----CCcEEEEEEHHHHHHHHhhhh-hhcchh--hh--------------
Confidence 678899999999999999999999999998 689999999999987653211 000000 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEec--CCCeEEEEEeHHhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP--RASRVIGLITRKDLL 752 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd--~~g~lvGIITr~DLl 752 (799)
.. ..+.....+++++|+++++++++++++.++.+.|.+.+.+.+||++ ++++++|+||++|++
T Consensus 62 ----------~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 62 ----------SG-----EKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred ----------hh-----hhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 00 0000011235566888899999999999999999999999999984 469999999999997
Q ss_pred hH
Q 003732 753 IE 754 (799)
Q Consensus 753 ~~ 754 (799)
++
T Consensus 127 ~~ 128 (128)
T cd04632 127 RA 128 (128)
T ss_pred cC
Confidence 63
No 86
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.21 E-value=8.5e-11 Score=133.74 Aligned_cols=118 Identities=19% Similarity=0.358 Sum_probs=101.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC---ceEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE---RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~---~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~ 660 (799)
.+.++.|.++ ++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|+..... .
T Consensus 80 k~~~~~~~~~-~vtl~~~~tv~eal~~m~~~~~s~lpVvd~----~~~~~~lvGIVt~rDL~~~~~--~----------- 141 (450)
T TIGR01302 80 KRAENGIISD-PVTISPETTVADVLELMERKGISGIPVVED----GDMTGKLVGIITKRDIRFVKD--K----------- 141 (450)
T ss_pred ccccCceecC-ceEeCCCCCHHHHHHHHHHcCCCEEEEEeC----CCCCCeEEEEEEHHHHhhhhc--C-----------
Confidence 4568889888 999999999999999999999999999998 4 69999999999954210 0
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccccccccC-CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003732 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (799)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~ 739 (799)
..+++++|+ ++++++++++++.+++++|.+.+.+++||+|++
T Consensus 142 -------------------------------------~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~ 184 (450)
T TIGR01302 142 -------------------------------------GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN 184 (450)
T ss_pred -------------------------------------CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence 012344588 489999999999999999999999999999999
Q ss_pred CeEEEEEeHHhhhhHhc
Q 003732 740 SRVIGLITRKDLLIEDG 756 (799)
Q Consensus 740 g~lvGIITr~DLl~~~~ 756 (799)
|+++|+||++|+++...
T Consensus 185 G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 185 GELVGLITMKDIVKRRK 201 (450)
T ss_pred CcEEEEEEhHHhhhccc
Confidence 99999999999999753
No 87
>PRK03655 putative ion channel protein; Provisional
Probab=99.21 E-value=3e-10 Score=127.45 Aligned_cols=172 Identities=12% Similarity=0.060 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHH
Q 003732 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (799)
Q Consensus 75 ~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (799)
.|...+++|+++|+++.+|.......+++.... ..+++ . ..+++++.+.+.....|...|+|..+++
T Consensus 222 ~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~---------~~p~~-~---~~lgGl~vg~l~l~~~~~~~g~Gy~~i~ 288 (414)
T PRK03655 222 DILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL---------KNPVL-V---LGIGGFILGILGVIGGPLTLFKGLDEMQ 288 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccchH-H---HHHHHHHHHHHHHHhCCccccCCHHHHH
Confidence 455778899999999999987776665443211 01111 1 1244455555555446888999999999
Q ss_pred HHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHH
Q 003732 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVT 234 (799)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~ 234 (799)
..+++.+.+-..-.-..+.|++.+.+|++||.++|...|+..+||++|+.+++. + .+.+....++
T Consensus 289 ~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l-----------~----p~~~~~~~v~ 353 (414)
T PRK03655 289 QMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH-----------V----PAVPAAITVS 353 (414)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh-----------c----cCCChHHHHH
Confidence 888763332222223567999999999999999999999999999999999872 1 2334566889
Q ss_pred Hhhhhhhhhhhc----CccchhhhheeccccchhhhhHHHHHHHHHHHHHHH
Q 003732 235 CGCAAGVAAAFR----APVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (799)
Q Consensus 235 ~G~aAgvaaaF~----APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~ 282 (799)
+||+|.++++-+ +|+++++.++|++ ..+.+.++++++.+.
T Consensus 354 ~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 354 CAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHHH
Confidence 999999999999 6999999999997 345566666666554
No 88
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.4e-10 Score=107.54 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=94.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+++++++++++++.+.|++.+++.+||+|+ ++++|+++.+++...+.+.. .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 57 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVVED-----NELVGVISDRDYLKAISPFL--GTAGE------------------ 57 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-----CeEEEEEEHHHHHHHHHHHh--ccccc------------------
Confidence 778999999999999999999999999986 79999999999987654211 00000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
...+. .....++.++|+++++++.+++++.++.+.|.+.+.+.+||+|++++++|++|++|++++
T Consensus 58 ---------~~~~~------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 58 ---------TEKDL------ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred ---------hHHHH------HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 00000 001124566788999999999999999999999999999999988999999999999863
No 89
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.20 E-value=2.5e-10 Score=129.90 Aligned_cols=194 Identities=16% Similarity=0.099 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHH
Q 003732 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (799)
Q Consensus 74 ~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (799)
..+.+.+++|+++|+++.+|+....++++++.+.. .....++.. .+.+++.+.+ .++.|+..|+|-..+
T Consensus 205 ~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~-------~~~~~~~~~---~l~~l~~~~l-~~~~p~~~~~g~~~i 273 (445)
T cd03684 205 FELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL-------LKRYPVLEV---LLVALITALI-SFPNPYTRLDMTELL 273 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhHHHHH---HHHHHHHHHH-HhChHHHccchhhHH
Confidence 34557899999999999999999988877654321 001111111 2233333433 456799999998778
Q ss_pred HHHHccccc----------------ccc----hhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCcccc
Q 003732 154 KGYLNGVDI----------------HGI----LLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKY 213 (799)
Q Consensus 154 ~~~l~g~~~----------------~~~----l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~ 213 (799)
+..+++... ..+ .-.-.++.|++.+.+++++|.++|...|+..+||++|..++...+...
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~ 353 (445)
T cd03684 274 ELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA 353 (445)
T ss_pred HHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH
Confidence 776653210 001 112346899999999999999999999999999999999987422100
Q ss_pred cccccccc---ccC------ChhhhhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 214 HLRYRWLQ---VFR------SDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 214 ~~~~~~~~---~f~------~~~~~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
. ++. +|. ...+.-.++.+||||-+|++.|||++++++.+|++.+ ...+.+.++++.+|..+.+.
T Consensus 354 ~----~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~vs~~ 426 (445)
T cd03684 354 Y----SYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWVADA 426 (445)
T ss_pred h----hCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHHHHH
Confidence 0 000 010 1123457899999999999999999999999999986 45667888888888777764
Q ss_pred h
Q 003732 285 A 285 (799)
Q Consensus 285 ~ 285 (799)
+
T Consensus 427 ~ 427 (445)
T cd03684 427 I 427 (445)
T ss_pred h
Confidence 3
No 90
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.20 E-value=2.3e-10 Score=104.07 Aligned_cols=108 Identities=19% Similarity=0.344 Sum_probs=90.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.+++++.+.|.+.++..+||+|+ ++++|+++.+++...+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-----~~~~G~v~~~~l~~~~~~~~-~~---------------------- 54 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD-----GRLVGIVTDRDLRNRVVAEG-LD---------------------- 54 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEEC-----CEEEEEEEhHHHHHHHhccC-CC----------------------
Confidence 678899999999999998888889999986 79999999999976433211 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...++.++|++++.++++++++.++++.|.+.+.+++||+|+ |+++|++|++|+++
T Consensus 55 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 55 ----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred ----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 011234458889999999999999999999999999999998 99999999999975
No 91
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=8.6e-11 Score=109.97 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=86.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+......+........
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~----~~~~~Giv~~~dl~~~~~~~~~~~~~~~------------------ 60 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDS----DDNFIGVITAVDLLGEEPIKRIQEGGIS------------------ 60 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcC----CCcEEEEEEHHHHhhChhhHHHHHcCCC------------------
Confidence 678899999999999999888899999997 6899999999999752100000000000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeee------cCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEe
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV------PEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLIT 747 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV------~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIIT 747 (799)
. ...+++++|++++..+ .+++++.++++.|.+.+.+++||+|++ |+++|+||
T Consensus 61 -----~----------------~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it 119 (126)
T cd04640 61 -----R----------------SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIIS 119 (126)
T ss_pred -----c----------------hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEe
Confidence 0 0112334476655443 368999999999999999999999986 79999999
Q ss_pred HHhhhh
Q 003732 748 RKDLLI 753 (799)
Q Consensus 748 r~DLl~ 753 (799)
+.|+++
T Consensus 120 ~~di~~ 125 (126)
T cd04640 120 TSDIAR 125 (126)
T ss_pred HHHHhh
Confidence 999976
No 92
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.19 E-value=1.1e-10 Score=105.86 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=87.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.++.++.+.|.+.++..+||+|+ +++++|+++.+++.... . .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~---~-----~------------------- 52 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDD----DGKLVGIVTNRDLRFET---D-----L------------------- 52 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcC----CCEEEEEEEhhHeeecc---c-----C-------------------
Confidence 678899999999999999899999999998 68999999999884210 0 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecC-CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE-DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~-~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...+.++|++.+..+.+ ++++.++++.|.+.+.+.+||+|++++++|+||++|+++
T Consensus 53 -----------------------~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 -----------------------DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred -----------------------CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 01233447777777777 999999999999999999999998899999999999975
No 93
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.19 E-value=2.3e-10 Score=103.68 Aligned_cols=102 Identities=49% Similarity=0.850 Sum_probs=87.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
...+++++++.++.+.+.+.+++.+||+|+.. -+++++|+|+++|+.....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-ESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCC-CCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 67889999999999999999999999998610 03799999999999654211
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
+|.+++.++++++++.++++.|.+.+.+++||++ +|+++|+||++|++++
T Consensus 56 -----------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -----------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred -----------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 3778888999999999999999999999999996 4999999999999763
No 94
>PRK11573 hypothetical protein; Provisional
Probab=99.18 E-value=1.2e-10 Score=130.82 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=109.4
Q ss_pred hcccchhhhccC-CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003732 581 MRQMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (799)
Q Consensus 581 l~~l~v~diM~~-~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~ 659 (799)
+++.+|+|+|++ .++++++.+++++++.+.+++++|+.+||.++. .+.++|+|..+|++..+.++. .
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~---~D~IiGiv~~kDll~~~~~~~-----~---- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS---LDDAISMLRVREAYRLMTEKK-----E---- 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC---CCceEEEEEHHHHHHHhhccC-----c----
Confidence 578899999997 229999999999999999999999999999863 478999999999986432211 0
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003732 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (799)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~ 739 (799)
... .++.+++ ++|+.|++++++.++++.|++.+.+-..|+|+.
T Consensus 252 -----------------------~~~-------------~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy 294 (413)
T PRK11573 252 -----------------------FTK-------------ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY 294 (413)
T ss_pred -----------------------CCH-------------HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence 000 0122223 578899999999999999999999999999999
Q ss_pred CeEEEEEeHHhhhhHhccCCcch
Q 003732 740 SRVIGLITRKDLLIEDGEDSTTV 762 (799)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~~~ 762 (799)
|...|+||.+|+++...+++.++
T Consensus 295 G~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred CCeEEEeeHHHHHHHHhCCCCcc
Confidence 99999999999999999887654
No 95
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.18 E-value=6.8e-11 Score=130.55 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=108.9
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003732 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (799)
Q Consensus 581 l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~ 660 (799)
+-..+++++|+.+ ++++++..++.++.+.|.+.+.+..-++++ ++.+.||||++|+....-.+. +
T Consensus 146 ~~~trv~~~~~~~-~~~v~~~~~i~~aa~km~~~gv~s~v~l~~----~~~~~GIvT~~dl~~~v~~~g-----~----- 210 (610)
T COG2905 146 FILTRVGEVKTLP-AVTVSPQASIQDAARKMKDEGVSSLVVLDD----SGPLLGIVTRKDLRSRVIADG-----R----- 210 (610)
T ss_pred HHHHHHHHHhcCC-CcccCccCcHHHHHHHHHhcCCCeEEEEcC----CCCccceeehHHHHHHHHhcC-----C-----
Confidence 3446789999999 999999999999999999999998889988 789999999999987543322 0
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003732 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (799)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g 740 (799)
+ ....+.++|+.+|++|..++.+.+|+-+|.+++++|+||+++ |
T Consensus 211 -------------------~----------------~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~-g 254 (610)
T COG2905 211 -------------------S----------------KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED-G 254 (610)
T ss_pred -------------------C----------------cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC-C
Confidence 1 123345569999999999999999999999999999999987 9
Q ss_pred eEEEEEeHHhhhhHhccC
Q 003732 741 RVIGLITRKDLLIEDGED 758 (799)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (799)
+++||||.+||++.....
T Consensus 255 q~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 255 QPLGILTLTDILRLFSQN 272 (610)
T ss_pred eeeEEeeHHHHHHhhCCC
Confidence 999999999999987643
No 96
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.17 E-value=1.4e-10 Score=133.28 Aligned_cols=117 Identities=18% Similarity=0.293 Sum_probs=101.2
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCC
Q 003732 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGS 664 (799)
Q Consensus 585 ~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~ 664 (799)
.++|+|.++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.... .
T Consensus 88 ~~~dim~~~-~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~----~g~lvGiVt~~DL~~~~---~--------------- 144 (486)
T PRK05567 88 RSESGVVTD-PVTVTPDTTLAEALALMARYGISGVPVVDE----NGKLVGIITNRDVRFET---D--------------- 144 (486)
T ss_pred hhhhcccCC-CeEeCCCCCHHHHHHHHHHhCCCEEEEEcc----CCEEEEEEEHHHhhhcc---c---------------
Confidence 478899998 999999999999999999999999999998 78999999999994310 0
Q ss_pred CccccccccccccCCCCCCCccccccCccccccccccccccC-CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003732 665 KPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (799)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lv 743 (799)
. ..+++++|+ ++++++++++++.++.+.|.+.+.+.+||+|++|+++
T Consensus 145 ----------------~----------------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lv 192 (486)
T PRK05567 145 ----------------L----------------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLK 192 (486)
T ss_pred ----------------C----------------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence 0 012334487 7889999999999999999999999999999999999
Q ss_pred EEEeHHhhhhHhc
Q 003732 744 GLITRKDLLIEDG 756 (799)
Q Consensus 744 GIITr~DLl~~~~ 756 (799)
|+||++|+++...
T Consensus 193 GiIT~~DLl~~~~ 205 (486)
T PRK05567 193 GLITVKDIEKAEE 205 (486)
T ss_pred EEEEhHHhhhhhh
Confidence 9999999998753
No 97
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.17 E-value=4.3e-10 Score=103.07 Aligned_cols=113 Identities=19% Similarity=0.349 Sum_probs=95.5
Q ss_pred hhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcc
Q 003732 588 EACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPI 667 (799)
Q Consensus 588 diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~ 667 (799)
++|.++ ++++.++.++.++...|.++++..+||+++ ++++|+++.+|+...+.... .
T Consensus 3 ~~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-----~~l~Giit~~di~~~~~~~~-----~------------ 59 (117)
T COG0517 3 DIMTKD-VITVKPDTSVRDALLLMSENGVSAVPVVDD-----GKLVGIITERDILRALAAGG-----K------------ 59 (117)
T ss_pred ccccCC-CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEHHHHHHHHhccC-----C------------
Confidence 445566 899999999999999999999999999987 58999999999988765422 0
Q ss_pred ccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHH-cCCCEEEEecCCC-eEEEE
Q 003732 668 SHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQ-LGLRHIFVVPRAS-RVIGL 745 (799)
Q Consensus 668 ~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~-~glr~lpVvd~~g-~lvGI 745 (799)
.. ..+.++|++++.++.+++++.++.+.|.+ .+.+++||+|+++ +++|+
T Consensus 60 -------------~~----------------~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGi 110 (117)
T COG0517 60 -------------RL----------------LPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGI 110 (117)
T ss_pred -------------cc----------------ccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEE
Confidence 00 02344488899999999999999999999 6999999999986 99999
Q ss_pred EeHHhhh
Q 003732 746 ITRKDLL 752 (799)
Q Consensus 746 ITr~DLl 752 (799)
+|++|++
T Consensus 111 vt~~di~ 117 (117)
T COG0517 111 ITLSDIL 117 (117)
T ss_pred EEHHHcC
Confidence 9999974
No 98
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=3e-10 Score=104.13 Aligned_cols=108 Identities=21% Similarity=0.325 Sum_probs=87.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+. +++++++|+++.+|+.... . .
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~~~~G~v~~~dl~~~~-~-~------------------------- 55 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDG-KSGGKLLGIVTSRDIDFLT-D-S------------------------- 55 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCC-CcCCEEEEEEEhHHhhhhh-c-c-------------------------
Confidence 6788999999999999998888999999851 0137999999999985321 0 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecC--CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE--DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~--~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl 752 (799)
..+++++|.+.+.++.. ++++.++++.|++.+.+++||+|++|+++|+||++|++
T Consensus 56 -----------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 56 -----------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -----------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 01133447777777766 99999999999999999999999889999999999987
Q ss_pred h
Q 003732 753 I 753 (799)
Q Consensus 753 ~ 753 (799)
+
T Consensus 113 ~ 113 (114)
T cd04602 113 K 113 (114)
T ss_pred c
Confidence 5
No 99
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.16 E-value=3.7e-10 Score=101.74 Aligned_cols=110 Identities=26% Similarity=0.448 Sum_probs=92.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+++++|+...+.+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~G~v~~~~l~~~~~~~~--~~--------------------- 55 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDD----DGRLVGIVTERDLLRALAEGG--LD--------------------- 55 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECC----CCCEEEEEeHHHHHHHHHhcc--CC---------------------
Confidence 678899999999999999988999999998 689999999999987654322 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
+ ...+.++|..++.++++++++.++++.|.+.+.+++||+|++++++|++|++|+++
T Consensus 56 ------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 56 ------------P----------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ------------c----------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 0 00133457788899999999999999999999999999999999999999999975
No 100
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=3e-10 Score=102.51 Aligned_cols=103 Identities=23% Similarity=0.426 Sum_probs=88.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+++++.+.++.++.+.|++.+...+||+|+ ++++|+++..++... ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~g~v~~~~l~~~---~~------------------------- 50 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN-----GKVVGIVSARDLLGK---DP------------------------- 50 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeEC-----CEEEEEEEHHHhhcc---Cc-------------------------
Confidence 788899999999999998888889999986 799999999998531 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
..++.++|++.+.++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 51 -----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 -----------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred -----------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 01234458888899999999999999999999999999998899999999999975
No 101
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.16 E-value=5e-10 Score=101.88 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=89.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+++++++++++++.+.|.+.+++.+||+|+ +++.|+++.+++...+..+. .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~~~~-~----------------------- 53 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG-----DPRLGIVTRTDLLDAVLLDG-L----------------------- 53 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC-----CeEEEEEEHHHHHHHHHcCC-C-----------------------
Confidence 678899999999999999888889999986 68999999999987543221 0
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ....+.++|++++..+++++++.++.+.|.+.+.+.+||+|+ ++++|+||++|+++
T Consensus 54 -----~----------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 54 -----P----------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -----C----------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 0 011233448888899999999999999999999999999987 99999999999975
No 102
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=4.9e-10 Score=102.06 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=87.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++...++|.++ ++++|+++.+|+.+.+.... .+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~---~~-------------------- 54 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-----GELVGLLTFREVLQAMAQHG---AG-------------------- 54 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-----CEEEEEEEHHHHHHHHHhcC---Cc--------------------
Confidence 678899999999999998777777766654 89999999999987543210 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.. ...+.++|++.+.++++++++.++++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 55 -----~~----------------~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 55 -----VL----------------DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK 111 (112)
T ss_pred -----hh----------------cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence 00 01233448888889999999999999999999999999985 99999999999976
No 103
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.15 E-value=2.1e-10 Score=122.19 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=96.3
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~ 662 (799)
.++++|+|.+++++++++++++.++.+.|.+.+++.+||+|+ +++++|+|+.+|+...+....
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~----~g~~~Givt~~dl~~~~~~~~------------- 216 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE----NNQLVGVFTDGDLRRALLGGG------------- 216 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC----CCCEEEEEEcHHHHHHHhcCC-------------
Confidence 479999997632678899999999999999999999999997 689999999999987543211
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003732 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (799)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~l 742 (799)
+. ..+++++|.+++.++.+++++.++++.|.+.+.+++||+|++|++
T Consensus 217 -----------------~~----------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 263 (268)
T TIGR00393 217 -----------------SL----------------KSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKV 263 (268)
T ss_pred -----------------cc----------------cCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeE
Confidence 00 012334588889999999999999999999999999999988999
Q ss_pred EEEEe
Q 003732 743 IGLIT 747 (799)
Q Consensus 743 vGIIT 747 (799)
+|+|+
T Consensus 264 ~GvI~ 268 (268)
T TIGR00393 264 LGVLH 268 (268)
T ss_pred EEEEC
Confidence 99985
No 104
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=7e-10 Score=101.02 Aligned_cols=109 Identities=17% Similarity=0.373 Sum_probs=89.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.++.++.+.|.+.+++.+||+|+ ++++|+++..|+...+..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~-~~---------------------- 54 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDN-----EKPVGIITERDLVKKVVSRN-LK---------------------- 54 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEEC-----CEEEEEEEHHHHHHHHhhcc-CC----------------------
Confidence 678899999999999999989999999997 49999999999987543211 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
. ....+.++|++.+.++.+++++.++++.|.+.+.+.+||+|+ ++++|+||++|+++
T Consensus 55 -----~----------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 55 -----P----------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred -----c----------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhhhhc
Confidence 0 011233448888899999999999999999999999999997 49999999999875
No 105
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.15 E-value=2.5e-10 Score=130.64 Aligned_cols=116 Identities=11% Similarity=0.144 Sum_probs=96.6
Q ss_pred ccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccc
Q 003732 590 CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISH 669 (799)
Q Consensus 590 M~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 669 (799)
|.++ ++++++++++.++.+.|.+++++.+||+|+.. .+++++|+|+.+|+.... .
T Consensus 106 mi~d-pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~-~~GklvGIVT~~DL~~v~---~-------------------- 160 (505)
T PLN02274 106 FVSD-PVVKSPSSTISSLDELKASRGFSSVCVTETGT-MGSKLLGYVTKRDWDFVN---D-------------------- 160 (505)
T ss_pred ccCC-CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC-cCCeEEEEEEHHHHhhcc---c--------------------
Confidence 6777 89999999999999999999999999998610 027999999999995321 0
Q ss_pred ccccccccCCCCCCCccccccCccccccccccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEe
Q 003732 670 SFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747 (799)
Q Consensus 670 ~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIIT 747 (799)
. ..+++++|++. +.++++++++.+++++|.+.+.+.+||+|++++++|+||
T Consensus 161 -----------~----------------~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvIT 213 (505)
T PLN02274 161 -----------R----------------ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVT 213 (505)
T ss_pred -----------c----------------CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence 0 11233448766 679999999999999999999999999998899999999
Q ss_pred HHhhhhHhcc
Q 003732 748 RKDLLIEDGE 757 (799)
Q Consensus 748 r~DLl~~~~~ 757 (799)
++|+++....
T Consensus 214 r~DIlk~~~~ 223 (505)
T PLN02274 214 RTDVKRVKGY 223 (505)
T ss_pred HHHHHHHhhC
Confidence 9999997754
No 106
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.14 E-value=1.8e-10 Score=131.88 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=99.5
Q ss_pred hhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCC
Q 003732 586 AKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSK 665 (799)
Q Consensus 586 v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~ 665 (799)
+++.|..+ ++++++++++.++.+.|++++++.+||+|+.. .+++++|+|+.+|+... +.
T Consensus 98 ~e~g~i~d-pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~-~~gkLvGIVt~~DL~~~---~~---------------- 156 (495)
T PTZ00314 98 FENGFIMD-PYVLSPNHTVADVLEIKEKKGFSSILITVDGK-VGGKLLGIVTSRDIDFV---KD---------------- 156 (495)
T ss_pred cccccccC-CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc-cCCeEEEEEEHHHHhhc---cc----------------
Confidence 66788888 89999999999999999999999999998610 13799999999999521 00
Q ss_pred ccccccccccccCCCCCCCccccccCccccccccccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003732 666 PISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (799)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lv 743 (799)
. ..+++++|++ ++.++++++++.++.++|.+++.+.+||+|++++++
T Consensus 157 ---------------~----------------~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~li 205 (495)
T PTZ00314 157 ---------------K----------------STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELV 205 (495)
T ss_pred ---------------C----------------CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEE
Confidence 0 1123445887 789999999999999999999999999999999999
Q ss_pred EEEeHHhhhhHhc
Q 003732 744 GLITRKDLLIEDG 756 (799)
Q Consensus 744 GIITr~DLl~~~~ 756 (799)
|+||++|+++...
T Consensus 206 GIIT~~DIl~~~~ 218 (495)
T PTZ00314 206 ALVSRSDLKKNRG 218 (495)
T ss_pred EEEEehHhhhccc
Confidence 9999999998643
No 107
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.14 E-value=3.7e-10 Score=104.28 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=92.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.+++++.++.++.+.+.+++++.+||+|+ +++++|+++.+++........ .....
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 58 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVDE----EGRLVGIVTDRDLRDASPSPF--TTLSE------------------ 58 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEECC----CCcEEEEEEHHHHHHHhhhhc--ccchh------------------
Confidence 678899999999999999999999999998 689999999999976432211 00000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.+. ......+++++|++.+.++.+++++.++++.|.+.+..++||+|+ ++++|++|.+|+++
T Consensus 59 -----------~~~-----~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 59 -----------HEL-----YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred -----------hhh-----hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 000 000123355568888999999999999999999999999999998 99999999999976
No 108
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=2.4e-10 Score=103.79 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=84.8
Q ss_pred ecCcccHHHHHHHHhhCCC-----CeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccc
Q 003732 598 LPRIIKVADVVSILRTNKH-----NGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFS 672 (799)
Q Consensus 598 l~~~~tv~~~~~~L~~~~~-----~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (799)
+++++++.++.+.|+++++ ..+||+|+ +++++|+|+.+++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~----~~~~~G~v~~~~l~~~---~~----------------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE----EGRLLGVVSLRDLLLA---DP----------------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC----CCCEEEEEEHHHHhcC---CC-----------------------
Confidence 4678899999999987763 67999987 6899999999988531 00
Q ss_pred cccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhh
Q 003732 673 EFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (799)
Q Consensus 673 ~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl 752 (799)
..++.++|++++.++.+++++.++.+.|.+.+.+++||+|++++++|+||++|++
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 0123344788889999999999999999999999999999889999999999998
Q ss_pred hH
Q 003732 753 IE 754 (799)
Q Consensus 753 ~~ 754 (799)
++
T Consensus 107 ~~ 108 (109)
T cd04606 107 DV 108 (109)
T ss_pred hh
Confidence 75
No 109
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.14 E-value=5.2e-10 Score=101.22 Aligned_cols=108 Identities=25% Similarity=0.344 Sum_probs=87.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.|.+++++.+||+|+ ++++|+++..|+.+.+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~dl~~~~~~~~--~~--------------------- 54 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-----GRVVGSIDESDLLDALIEGK--AK--------------------- 54 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC-----CeeEEEEeHHHHHHHHhccc--cc---------------------
Confidence 678899999999999999999999999986 78999999999987653321 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
...++.++|++++.++++++++.++.++|.+ . ..+||+|++|+++|+||++|++++
T Consensus 55 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 55 ----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred ----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 0012334488888999999999999999998 3 358899888999999999999864
No 110
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.13 E-value=6.3e-10 Score=100.26 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=85.9
Q ss_pred EEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccccc
Q 003732 596 VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFV 675 (799)
Q Consensus 596 v~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (799)
+++++++++.++.+.+.+.++..+||+|+ ++++|+++.+|+.....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~----------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-----NKFLGAVYLKDIENATY----------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-----CEEEEEEEHHHHhhhcc-----------------------------
Confidence 57789999999999999999999999986 79999999999854210
Q ss_pred ccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 676 KPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 676 ~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIVTLDSILD 103 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC-CEEEEEEEHHHhhc
Confidence 0122347788899999999999999999999999999985 99999999999875
No 111
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=4.4e-10 Score=103.90 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=92.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|.+.+++.+||+|+ ++++|+++++++...+.... ..+..
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 57 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEG-----GKLVGIVTEKDIADALRSFR--PLVRD------------------ 57 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEEC-----CEEEEEEchHHHHHhhhhhh--hcccc------------------
Confidence 678899999999999999888999999986 79999999999987543211 00000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
... +......++.++|++++.++.+++++.++.++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 58 -----------~~~----~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 58 -----------RHQ----ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred -----------hhh----hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 000 0000112344568888999999999999999999999999999998 999999999999863
No 112
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.13 E-value=3.8e-10 Score=132.40 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=114.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccc---cCCCCC----
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVD---FQHSPL---- 656 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~---~~~~~~---- 656 (799)
.+++|+|+++ ++++++++++.++++.|.+++++.+||+|+ +++++|+|+++|+.+.+.+..- +..-..
T Consensus 68 ~~V~dim~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEIDK-PVTVSPDTSLKEAWNLMDENNVKTLPVVDE----EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 6899999998 999999999999999999999999999998 6899999999999886554220 000000
Q ss_pred ---------CCCCCCCC---Ccc------ccccccccccC-----CC-------------------CCCCcc-c------
Q 003732 657 ---------PCDTRGGS---KPI------SHSFSEFVKPA-----SS-------------------KGLSID-D------ 687 (799)
Q Consensus 657 ---------~~~~~~~~---~~~------~~~~~~~~~~~-----~~-------------------~~~~i~-d------ 687 (799)
........ ... ...+....++. .+ ....+. +
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 00000000 000 00000000000 00 000000 0
Q ss_pred ---cc--cC-------ccccccccccccccC-CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 688 ---IH--LS-------SDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 688 ---i~--~~-------~~~~~~~idl~~~m~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
+. .+ .........++++|+ +++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP 302 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence 00 00 011234577889999 899999999999999999999999999999988999999999999996
Q ss_pred hcc
Q 003732 755 DGE 757 (799)
Q Consensus 755 ~~~ 757 (799)
..+
T Consensus 303 ~~~ 305 (546)
T PRK14869 303 VRK 305 (546)
T ss_pred ccC
Confidence 654
No 113
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.11 E-value=4.8e-10 Score=127.16 Aligned_cols=132 Identities=27% Similarity=0.350 Sum_probs=110.8
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003732 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (799)
Q Consensus 581 l~~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~ 658 (799)
+++.+|+++|++ + +.+++.+.++.++.+.+.+++|+.+||.++. .+.++|+++.+|++..+.+.. -
T Consensus 203 l~~~~v~eiMtPR~~-i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~---~D~iiGiv~~Kdll~~~~~~~-~------- 270 (429)
T COG1253 203 LDDRTVREIMTPRTD-IVALDLTDTVEELIELILESGHSRIPVYDGD---LDNIIGIVHVKDLLRALLDGQ-S------- 270 (429)
T ss_pred cCCcEeeeEeeeccc-EEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC---CCcEEEEEEHHHHHHHHhcCc-c-------
Confidence 678899999997 5 8999999999999999999999999999942 578999999999988654432 0
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003732 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (799)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~ 738 (799)
+ .+....+ ++|+.|++++++.++++.|++.+.+...|+|+
T Consensus 271 ----------------------------~-----------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE 310 (429)
T COG1253 271 ----------------------------D-----------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE 310 (429)
T ss_pred ----------------------------c-----------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc
Confidence 0 0000012 27889999999999999999999999999999
Q ss_pred CCeEEEEEeHHhhhhHhccCCcchhh
Q 003732 739 ASRVIGLITRKDLLIEDGEDSTTVEL 764 (799)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~~~ 764 (799)
.|.+.|+||.+|++++..++..++..
T Consensus 311 yG~~~GlVTleDIiEeIvGei~de~d 336 (429)
T COG1253 311 YGGVEGLVTLEDIIEEIVGEIPDEHD 336 (429)
T ss_pred CCCeEEEeEHHHHHHHHhCCCcCccc
Confidence 99999999999999999988776544
No 114
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=1.3e-09 Score=104.49 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=95.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++++++++++.++.+.|++++++.+||+|+ ++++|+++++|+...+.... ...+.. .. +....+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-----~~~~G~v~~~dl~~~~~~~~-~~~~~~--~~--------~~~~~~ 66 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLDG-----GKLVGIVSESDILKLLVTHD-PSGNLW--LP--------SPLELI 66 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeEC-----CeEEEEecHHHHHHHHHhcc-Cccccc--cC--------Ccceee
Confidence 778999999999999999999999999986 68999999999987664322 000000 00 000000
Q ss_pred cccCCCCCCCcccc-ccCc---c-ccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHH
Q 003732 675 VKPASSKGLSIDDI-HLSS---D-DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRK 749 (799)
Q Consensus 675 ~~~~~~~~~~i~di-~~~~---~-~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~ 749 (799)
...+.++ ...+ . +.....++.++|++.+.++.+++++.++++.|.+.+.+++||+|+ ++++|+||++
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~ 138 (143)
T cd04634 67 -------ELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRG 138 (143)
T ss_pred -------eccchheeehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence 0001110 0000 0 000124566778899999999999999999999999999999998 9999999999
Q ss_pred hhhh
Q 003732 750 DLLI 753 (799)
Q Consensus 750 DLl~ 753 (799)
|+++
T Consensus 139 dl~~ 142 (143)
T cd04634 139 DIIE 142 (143)
T ss_pred Hhhc
Confidence 9874
No 115
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=9.6e-10 Score=101.29 Aligned_cols=112 Identities=24% Similarity=0.374 Sum_probs=88.3
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~-~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (799)
+.++++++++.++.+.+++.+ ++.+||+|+ ++++|+++.+|+...+.+.. ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-----~~~~G~v~~~~l~~~~~~~~--~~~~------------------ 57 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDD-----GRPVGLIMREALMELLSTPY--GRAL------------------ 57 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEEC-----CeeEEEEEHHHHHHHHhchh--hHHH------------------
Confidence 667889999999999998876 889999986 79999999999976543211 0000
Q ss_pred ccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEE---EEecCCCeEEEEEeHHh
Q 003732 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHI---FVVPRASRVIGLITRKD 750 (799)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~l---pVvd~~g~lvGIITr~D 750 (799)
....++.++|++++.++.+++++.++++.|.+.+.+++ ||+|++|+++|+||++|
T Consensus 58 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~d 115 (119)
T cd04598 58 ----------------------YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKD 115 (119)
T ss_pred ----------------------HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHH
Confidence 00112445588999999999999999999999986544 68888899999999999
Q ss_pred hhh
Q 003732 751 LLI 753 (799)
Q Consensus 751 Ll~ 753 (799)
+++
T Consensus 116 i~~ 118 (119)
T cd04598 116 LLR 118 (119)
T ss_pred Hhc
Confidence 975
No 116
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.07 E-value=1.7e-09 Score=123.64 Aligned_cols=168 Identities=17% Similarity=0.157 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHH
Q 003732 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (799)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (799)
...+.+.+++|+++|+++.+|+....++++++.... .. . ....+...++.+++.+++. +
T Consensus 274 ~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~--~-~~~~~l~~~lv~~~~~~~~-~------------ 332 (466)
T cd03685 274 YFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRIN-----HK--G-KLLKVLEALLVSLVTSVVA-F------------ 332 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc--c-chhHHHHHHHHHHHHHHHH-H------------
Confidence 344568999999999999999999988876543220 00 0 1111122222222222221 1
Q ss_pred HHHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003732 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (799)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~l 232 (799)
. ....-.++.|++.+.+++++|.++|...|+..+||++|..++..... ++.. ...+.-.+
T Consensus 333 ----------~-~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~~~--~~~~~~~~ 392 (466)
T cd03685 333 ----------P-QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGS-------YFGF--TSIDPGLY 392 (466)
T ss_pred ----------H-HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHH-------Hccc--cCCCchHH
Confidence 0 01133457899999999999999999999999999999999873211 1111 23345679
Q ss_pred HHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 233 v~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
+.+||||-++++.|+|++++++.+|++.+ ...+.+.++++++|..+.+.
T Consensus 393 aliGmaa~lag~~raPlt~iviv~ElTg~---~~~l~pl~ia~~iA~~va~~ 441 (466)
T cd03685 393 ALLGAAAFLGGVMRMTVSLTVILLELTNN---LTYLPPIMLVLMIAKWVGDY 441 (466)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 45667778888777777664
No 117
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=1.4e-09 Score=98.20 Aligned_cols=103 Identities=23% Similarity=0.368 Sum_probs=87.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++.+.+.+.+++.+||+|+ +++++|+++++++... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~g~v~~~~l~~~---~~------------------------- 50 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKK----SGELVGIITRKDLLRN---PE------------------------- 50 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcC----CCcEEEEEEHHHHHhc---cc-------------------------
Confidence 678889999999999999988999999987 6899999999999531 00
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
...+.++|++.+.++.+++++.++.+.|++.+.+.+||+|+ |+++|+||++|+++
T Consensus 51 -----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 51 -----------------------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -----------------------cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 00123447788899999999999999999999999999996 89999999999875
No 118
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.01 E-value=5.4e-10 Score=124.93 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=116.6
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCC
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~-----~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~ 657 (799)
.-+++.+|+.+ +++++++.|++++++.+++. ....++|+|+ +++++|+++.++|+.. +.
T Consensus 131 e~taG~~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~----~~~L~Gvvsl~~Ll~a---~~-------- 194 (451)
T COG2239 131 EDTAGRIMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE----KGKLLGVVSLRDLLTA---EP-------- 194 (451)
T ss_pred hhhhhccceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECC----ccceEEEeeHHHHhcC---Cc--------
Confidence 35789999999 99999999999999999843 3567889998 7899999999998431 10
Q ss_pred CCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEec
Q 003732 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (799)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd 737 (799)
...+++ +|++.+++|++++..+++.++|+++++-++||||
T Consensus 195 ------------------------~~~i~~----------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 195 ------------------------DELLKD----------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred ------------------------HhHHHH----------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 112334 4999999999999999999999999999999999
Q ss_pred CCCeEEEEEeHHhhhhHhccCCcchhhhhhhhhhhhccccccccccccccccccccc
Q 003732 738 RASRVIGLITRKDLLIEDGEDSTTVELQSTSVRAQRRDKSLLTRNTEAELPLLNGLL 794 (799)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 794 (799)
++++++|+||..|+++...++..+.-.+... ...+...........+.|..||+
T Consensus 235 ~~~~LiG~itiDDiidvi~eEa~eDi~~~~G---~~~~~~~~~~v~~~~k~R~~WLl 288 (451)
T COG2239 235 EDNRLIGIITIDDIIDVIEEEATEDILRMAG---PLDVPDLFASVLKLVKKRIPWLL 288 (451)
T ss_pred CCCceeeeeeHHHHHHHHHHHHHHHHHHhcC---CCCCchhccCHHHHHhhhHHHHH
Confidence 9999999999999999887665432222111 12223444445555566665554
No 119
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.97 E-value=1.1e-08 Score=115.77 Aligned_cols=174 Identities=18% Similarity=0.108 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHH
Q 003732 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (799)
Q Consensus 74 ~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (799)
..+...+++|+++|+++.+|+....++.+++.+.... ......++ .+.+.+++.+.+. +
T Consensus 234 ~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~i~~~~~-~------------- 292 (416)
T cd01036 234 YEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFR---KTARYRVL----EPVLFTLIYSTIH-Y------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhHH----HHHHHHHHHHHHH-H-------------
Confidence 3456789999999999999999998887765432110 00111111 1222333332221 1
Q ss_pred HHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccc--cCChhhhhh
Q 003732 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQV--FRSDRDRRD 231 (799)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~--f~~~~~~r~ 231 (799)
+ ..-.-.++.|++.+.+++++|.++|...|+..+||++|..++...+..++- -.++ .....+...
T Consensus 293 ---~-------~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~---~~~~~~~~~~~~~~~ 359 (416)
T cd01036 293 ---A-------PTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVA---GIGAESATLWADPGV 359 (416)
T ss_pred ---H-------HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccc---cccccccCCccChHH
Confidence 0 011345789999999999999999999999999999999998742211100 0000 001234567
Q ss_pred HHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 232 LVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 232 lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
++.+||||-++++.|+|++++++.+|++.+ .....+.++++.+|..+.+.
T Consensus 360 ~alvGmaa~l~~~~r~Plt~~vi~~ElTg~---~~~l~pl~ia~~ia~~v~~~ 409 (416)
T cd01036 360 YALIGAAAFLGGTTRLTFSICVIMMELTGD---LHHLLPLMVAILIAKAVADA 409 (416)
T ss_pred HHHHHHHHHhhhhhcchHhhhhheeeccCC---hhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999976 45566777777777766654
No 120
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.93 E-value=2.5e-09 Score=112.95 Aligned_cols=131 Identities=24% Similarity=0.314 Sum_probs=111.0
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003732 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (799)
Q Consensus 581 l~~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~ 658 (799)
+++++|+|+|.+ + +..+..+++.+++++.+.++.|+.+||-.++ -+..+|++..+|+++++.++.-|.
T Consensus 197 Le~~tV~DIMvpR~~-i~~id~d~~~e~iv~ql~~s~HtRiplyr~~---~DnIiGvlh~r~llr~l~e~~~~~------ 266 (423)
T COG4536 197 LENLTVSDIMVPRNE-IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD---LDNIIGVLHVRDLLRLLNEKNEFT------ 266 (423)
T ss_pred cccceeeeeeccccc-eeeecCCCCHHHHHHHHhhCCCCceeeecCC---hhHhhhhhhHHHHHHHhhccCccc------
Confidence 679999999987 5 8899999999999999999999999998763 356999999999999876543000
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003732 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (799)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~ 738 (799)
..|+.. .-..|+.|++.+++.+-+..|++.+-|.-.|||+
T Consensus 267 ---------------------------------------k~d~~~-~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE 306 (423)
T COG4536 267 ---------------------------------------KEDILR-AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE 306 (423)
T ss_pred ---------------------------------------HhHHHH-HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec
Confidence 011111 2367899999999999999999999999999999
Q ss_pred CCeEEEEEeHHhhhhHhccCCcc
Q 003732 739 ASRVIGLITRKDLLIEDGEDSTT 761 (799)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~ 761 (799)
.|.+.|+||.+|++++..++..+
T Consensus 307 YG~i~GLVTLEDIlEEIVGdftd 329 (423)
T COG4536 307 YGDIQGLVTLEDILEEIVGDFTD 329 (423)
T ss_pred cCcEEeeeeHHHHHHHHhccccc
Confidence 99999999999999999888774
No 121
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.88 E-value=4.6e-09 Score=104.10 Aligned_cols=130 Identities=23% Similarity=0.359 Sum_probs=110.1
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003732 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (799)
Q Consensus 581 l~~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~ 658 (799)
..+++|+|+|.+ . .++++.+.++.+....+.++.|+.|||+.+. +..+.|++..+||+..+....
T Consensus 64 iadl~vrDiMIPRSQ-M~~l~~~~~l~~~l~~iiesaHSRfPVi~ed---kD~v~GIL~AKDLL~~~~~~~--------- 130 (293)
T COG4535 64 IADLRVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAHSRFPVISED---KDHVEGILLAKDLLPFMRSDA--------- 130 (293)
T ss_pred HHHhhHhhhcccHHH-heeccccCCHHHHHHHHHHhccccCCcccCC---chhhhhhhhHHHHHHHhcCCc---------
Confidence 468899999987 4 8899999999999999999999999999873 578999999999998765432
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003732 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (799)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~ 738 (799)
...|+++ +-|+...|++.-.+...++-||..+.+...|+|+
T Consensus 131 --------------------------------------~~F~i~~-lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE 171 (293)
T COG4535 131 --------------------------------------EPFDIKE-LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE 171 (293)
T ss_pred --------------------------------------ccccHHH-hcccceecccchhHHHHHHHHHhhcCceEEEEec
Confidence 0112222 3466678999999999999999999999999999
Q ss_pred CCeEEEEEeHHhhhhHhccCCcch
Q 003732 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (799)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (799)
.|-+.|.||.+|+++...+++.++
T Consensus 172 fGgVsGLVTIEDiLEqIVGdIEDE 195 (293)
T COG4535 172 FGGVSGLVTIEDILEQIVGDIEDE 195 (293)
T ss_pred cCCeeeeEEHHHHHHHHhcccccc
Confidence 999999999999999998887764
No 122
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.80 E-value=8.9e-09 Score=82.10 Aligned_cols=55 Identities=31% Similarity=0.553 Sum_probs=51.5
Q ss_pred ccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 702 GPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 702 ~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
+++|+++++++++++++.++.+.|++.+.+++||+|++|+++|+||++||+++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 3569999999999999999999999999999999999999999999999998764
No 123
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.80 E-value=6.1e-08 Score=109.86 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHH
Q 003732 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (799)
Q Consensus 74 ~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (799)
..|...+++|+++|+++.+|+....++.+++.+... ...-...... ....+.+++.+.+. .|
T Consensus 230 ~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~~---l~~~~~g~~~~~l~---~p---------- 291 (426)
T cd03683 230 QELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRL--FSKFLKRSPL---LYPAIVALLTAVLT---FP---------- 291 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcccchH---HHHHHHHHHHHHHH---HH----------
Confidence 445689999999999999999998888776433210 0000000111 11222333333221 23
Q ss_pred HHHHcccccccchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHH
Q 003732 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (799)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv 233 (799)
-....-.++.|++.+.+++++|.++|...|+..+||++|..++......++.. +........+.-.++
T Consensus 292 ----------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~--~~~~~~~~~~~~~~a 359 (426)
T cd03683 292 ----------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEG--IRGGISNPIGPGGYA 359 (426)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcc--cccCCCCCcCchHHH
Confidence 01223457899999999999999999999999999999999886321111000 000000123456799
Q ss_pred HHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHHHH
Q 003732 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (799)
Q Consensus 234 ~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~~~ 284 (799)
.+||||-++++.|+|.+.+ +.+|++.+ ...+.+.++++++|..+.+.
T Consensus 360 lvGmaa~~a~~~ra~~t~v-lv~E~Tg~---~~~llpl~ia~~ia~~v~~~ 406 (426)
T cd03683 360 VVGAAAFSGAVTHTVSVAV-IIFELTGQ---ISHLLPVLIAVLISNAVAQF 406 (426)
T ss_pred HHHHHHHHHHHHhHHHHHh-eeeeecCC---cchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875 89999976 35567777777777766653
No 124
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.74 E-value=7.6e-08 Score=91.26 Aligned_cols=116 Identities=10% Similarity=0.151 Sum_probs=79.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.++++++++.++++.|.+++++.+||+|+ +++++|+|+.+|+++.+.... ...... ..+
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~----~g~l~Givt~~Dl~~~~~~~~-~~~~~~--~~~------------- 62 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDS----DDFLEGILTLGDIQRFLFTNK-TTRVQP--EDE------------- 62 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECC----CCeEEEEEEHHHHHHHHhhcc-cccccc--chh-------------
Confidence 788999999999999999999999999998 789999999999988664322 100000 000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~ 739 (799)
-...+...+.++. ....+.+.|.+++.++++++++.+|+++|.+++.+++||+|++
T Consensus 63 --~~~~~~~~v~~i~-------~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 63 --TKQTNTCLVSSVC-------TKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred --hcccccccHHHHh-------hhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0000000001110 0000112245678899999999999999999999999999864
No 125
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.55 E-value=2.2e-07 Score=74.04 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=52.6
Q ss_pred hhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHh
Q 003732 586 AKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (799)
Q Consensus 586 v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~ 646 (799)
|+|+|+++ ++++++++++.++.+.|++++++.+||+|+ +++++|+|+++||++.+.
T Consensus 1 v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP-PITVSPDDSLEEALEIMRKNGISRLPVVDE----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS-SEEEETTSBHHHHHHHHHHHTSSEEEEEST----TSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC-CEEEcCcCcHHHHHHHHHHcCCcEEEEEec----CCEEEEEEEHHHHHhhhh
Confidence 68999998 999999999999999999999999999998 799999999999988753
No 126
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.43 E-value=1e-06 Score=97.82 Aligned_cols=124 Identities=16% Similarity=0.251 Sum_probs=98.2
Q ss_pred CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccc
Q 003732 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFS 672 (799)
Q Consensus 593 ~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (799)
+ +..+.+++++.++++.|.+.+.+++||||+ .++.+|.+++.|...+..... +.....
T Consensus 238 ~-i~~i~~~~~v~~al~~m~~~~is~lpvV~~----~g~~v~~~s~~Dv~~l~~~~~-~~~~~~---------------- 295 (381)
T KOG1764|consen 238 N-IASISEDTPVIEALKIMSERRISALPVVDE----NGKKVGNYSRFDVIHLAREGT-YNNLDL---------------- 295 (381)
T ss_pred h-heeecCCCcHHHHHHHHHhcCcCcceEEcC----CCceecceehhhhhhhhhcCc-cCccch----------------
Confidence 5 888999999999999999999999999998 677799999999988765543 221110
Q ss_pred cccccCCCCCCC-ccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhh
Q 003732 673 EFVKPASSKGLS-IDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (799)
Q Consensus 673 ~~~~~~~~~~~~-i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DL 751 (799)
+ +. +..+.++.-....+++.++.++.++++.+...+.+++.|||++|+++|+||..|+
T Consensus 296 -----------~~l~----------~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDi 354 (381)
T KOG1764|consen 296 -----------SCLS----------EALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDI 354 (381)
T ss_pred -----------hHHH----------HHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHH
Confidence 0 00 1111222222335899999999999999999999999999999999999999999
Q ss_pred hhHhccCC
Q 003732 752 LIEDGEDS 759 (799)
Q Consensus 752 l~~~~~~~ 759 (799)
+.+.....
T Consensus 355 l~~l~~~p 362 (381)
T KOG1764|consen 355 LSYLVLTP 362 (381)
T ss_pred HHHHHhCc
Confidence 99886543
No 127
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.42 E-value=2.3e-06 Score=94.64 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=89.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
.....++.+..++.+.+...+.+...|+|+ ++++.|.++.+++...++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~------------------------- 302 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDR----QNKLVGVVDVESIKQARKKAQ------------------------- 302 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeHHHHHHHhhcCC-------------------------
Confidence 345566778899999999999999999998 789999999999876543211
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
. +.+.+.+...++++++++.+++..|.+.+.. +||+|++|+++|+||+.+++++
T Consensus 303 ---------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 303 ---------G----------------LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDA 356 (363)
T ss_pred ---------c----------------hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHH
Confidence 1 1222666778899999999999999999999 9999999999999999999998
Q ss_pred hcc
Q 003732 755 DGE 757 (799)
Q Consensus 755 ~~~ 757 (799)
+.+
T Consensus 357 ~~~ 359 (363)
T TIGR01186 357 LYD 359 (363)
T ss_pred HHh
Confidence 754
No 128
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.40 E-value=6.2e-07 Score=95.68 Aligned_cols=111 Identities=14% Similarity=0.368 Sum_probs=93.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
++.++|..++.++++.-..++..++||.++... .++|+|+|+.+|+-.+ +++.
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~-~~KLvG~vtsrdi~f~-~~~~------------------------- 170 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR-GSKLVGIITSRDIQFL-EDNS------------------------- 170 (503)
T ss_pred CcccCCcccchhhhhhcccccccccccccCCcc-cceeEEEEehhhhhhh-hccc-------------------------
Confidence 578899999999999999999999999976321 3799999999999543 2111
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
..++| +|.+.+++.+...+++++-+++++.....+||||++|+++-+|+|.||.+.
T Consensus 171 --------~~~~~----------------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 171 --------LLVSD----------------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred --------chhhh----------------hcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 12333 488889999999999999999999999999999999999999999999886
Q ss_pred hc
Q 003732 755 DG 756 (799)
Q Consensus 755 ~~ 756 (799)
..
T Consensus 227 ~~ 228 (503)
T KOG2550|consen 227 RD 228 (503)
T ss_pred cC
Confidence 54
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2.5e-06 Score=95.57 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=94.3
Q ss_pred cchhhhccCCce--EEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003732 584 MTAKEACGAQKV--VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (799)
Q Consensus 584 l~v~diM~~~kv--v~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~ 661 (799)
+++.++|.++.. +...+..+..++++.|.+.+.+...|+|+ ++++.|+|+.+++......+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~------------ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIER----GNKFVGAVSIDSLKTALTQQQ------------ 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcC----CCcEEEEEeHHHHHhhhhcCC------------
Confidence 566777755301 22335668899999999999999999998 799999999999965432211
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003732 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (799)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~ 741 (799)
++.+.+.+...+|.+++++.+++..+.+.... +||+|++|+
T Consensus 338 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 378 (400)
T PRK10070 338 --------------------------------------GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQ 378 (400)
T ss_pred --------------------------------------chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCc
Confidence 12222566678999999999999999998777 999999999
Q ss_pred EEEEEeHHhhhhHhccC
Q 003732 742 VIGLITRKDLLIEDGED 758 (799)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (799)
++|+||+.++++.+.+.
T Consensus 379 ~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 379 YVGIISKGMLLRALDRE 395 (400)
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 99999999999987544
No 130
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.25 E-value=6.1e-07 Score=91.97 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHhhhcccHHHHHHHhcCCCCCCCCchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCC
Q 003732 538 FLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHN 617 (799)
Q Consensus 538 ~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~ 617 (799)
.+.|+.+.+++-...+- +|+. +..+.+|.....++...+. -.++ ....+..-+-+|+-+.+++.+.
T Consensus 152 ~l~Pval~SliLv~~a~-----lynn-l~~r~YPh~~~~p~an~Hg------T~Dp-pp~~rvgfs~~Dld~aL~~~~E- 217 (382)
T COG3448 152 VLWPVALNSLILVGLAL-----LYNN-LTRRTYPHHWLSPPANLHG------TADP-PPSQRVGFSSEDLDAALQRLGE- 217 (382)
T ss_pred eehhhhhhhHHHHHHHH-----HHHH-HhcCCCCCccCCCcccccC------CCCC-CchhccCCCHHHHHHHHHhcCc-
Confidence 57777777776655554 4555 5566777432222222111 1122 3344445566677777766443
Q ss_pred eeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCcccccc
Q 003732 618 GFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEM 697 (799)
Q Consensus 618 ~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~ 697 (799)
.+| |+|+||..++++.++..- .+ ...
T Consensus 218 ---~lD------------IdrddLe~llr~~elqa~--------------~R-------------------------~~~ 243 (382)
T COG3448 218 ---TLD------------IDRDDLERLLRETELQAL--------------RR-------------------------RMG 243 (382)
T ss_pred ---eec------------CCHHHHHHHHHHHHHHHH--------------HH-------------------------Hhc
Confidence 333 478899888776430000 00 001
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 698 ~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
..+..++|.++.+++++++++.++++++.+++++.+||+|++.|++||||+.|+++...
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~ 302 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR 302 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC
Confidence 34566679999999999999999999999999999999999999999999999998543
No 131
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.92 E-value=1.7e-05 Score=72.73 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=50.0
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 699 idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
..+.++|.+.+.++++++++.++++.|++.+.+.+||+|++|+++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 3456669899999999999999999999999999999998899999999999864
No 132
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.82 E-value=4.6e-05 Score=69.92 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=50.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
.+++|+|.++ +.++++++++.++++.|.++++..+||+|+ +++++|+|+.+|+.
T Consensus 58 ~~v~dim~~~-~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~----~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRK-PVTARPNDPLREALNLMHEHNIRTLPVVDD----DGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCC-CCEECCcCcHHHHHHHHHHcCCCEEEEECC----CCeEEEEEEHHHhh
Confidence 6799999998 999999999999999999999999999998 68999999999985
No 133
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.81 E-value=1.1e-05 Score=94.97 Aligned_cols=141 Identities=18% Similarity=0.320 Sum_probs=98.7
Q ss_pred cccchhhhcc-CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003732 582 RQMTAKEACG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (799)
Q Consensus 582 ~~l~v~diM~-~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~ 660 (799)
...+++++|+ ++ ++++++++++.++.+.|.+++++.+||||+ +++++|+|+++|+.....++..+.+.....+
T Consensus 244 ~~~~V~~iM~~~~-~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~----~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q- 317 (546)
T PRK14869 244 QSIPVSYIMTTED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDE----DGKVVGVISRYHLLSPVRKKVILVDHNEKSQ- 317 (546)
T ss_pred cCCCHHHhccCCC-cEEECCCCcHHHHHHHHHhcCCCceEEEcC----CCCEEEEEEHHHhhccccCceEEEcCccccc-
Confidence 4678999999 78 999999999999999999999999999998 7999999999999875443221111110000
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccc---cccccCCCCeee---cCCCCHHHHHHHHHHcCCCEEE
Q 003732 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYID---LGPFLNPSPYVV---PEDMSLSKVYNLFRQLGLRHIF 734 (799)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~id---l~~~m~~~p~tV---~~~~sL~~a~~lf~~~glr~lp 734 (799)
..+.++ ..+....+| +.++|++.|+.+ +...+...+.++|++.+....|
T Consensus 318 -----------------------~~~~~~--~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~ 372 (546)
T PRK14869 318 -----------------------AVEGIE--EAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSP 372 (546)
T ss_pred -----------------------cccchh--hceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCH
Confidence 000000 000001111 233466676655 3366678899999999999888
Q ss_pred EecCCCeEEEEEeHHhhhhH
Q 003732 735 VVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 735 Vvd~~g~lvGIITr~DLl~~ 754 (799)
++.. .-+.||+|-++.++.
T Consensus 373 ~ia~-~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 373 EIAG-LLLAAILSDTLLFKS 391 (546)
T ss_pred HHHH-HHHHHHHHHhcCccC
Confidence 8865 679999999888875
No 134
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.78 E-value=8.3e-05 Score=83.96 Aligned_cols=190 Identities=21% Similarity=0.170 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHH
Q 003732 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (799)
Q Consensus 76 w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (799)
.+..+++|+..|+.+.++...-.+..+.+... ....+. .+.+ +++.....++.+..|..+=.+..-+..
T Consensus 309 L~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~----~lg~~p---v~ev----~~vt~iTaiIs~~np~~r~~~~e~i~~ 377 (696)
T KOG0475|consen 309 LLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS----KLGKFP---VLEV----VFVTLVTAIISLFNPETRFNMSELITI 377 (696)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHhccchh----hccCCc---chhH----HHHHHHHHHHHhcCHHHHhhHHHHHHH
Confidence 34678999999999999888766655554322 011111 1111 222333445577788877777555655
Q ss_pred HHccccc------c-------cchhHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccc-ccccccc
Q 003732 156 YLNGVDI------H-------GILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYH-LRYRWLQ 221 (799)
Q Consensus 156 ~l~g~~~------~-------~~l~~~~l~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~-~~~~~~~ 221 (799)
.+|.-.. + -.+....++.|++.++++.|++.+.|..-|+..+||+.|-.+|-..-+.+. -+|.
T Consensus 378 Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~--- 454 (696)
T KOG0475|consen 378 LFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFN--- 454 (696)
T ss_pred HHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCcc---
Confidence 5543211 1 123355678999999999999999999999999999999988843211111 1111
Q ss_pred ccC-ChhhhhhHHHHhhhhhhhhhhcCccchhhhheeccccchhhhhHHHHHHHHHHHHHHH
Q 003732 222 VFR-SDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (799)
Q Consensus 222 ~f~-~~~~~r~lv~~G~aAgvaaaF~APi~GvlFalE~~~~~~~~~~~~~~~~~~~ia~~v~ 282 (799)
.|. +-.-.......||||-++.+-|-|++-|+.-+|++.. .+...+.+.+.+++..+.
T Consensus 455 ~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~---l~~IlPlm~av~~SkwI~ 513 (696)
T KOG0475|consen 455 LFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA---LNYILPLMLAVMISKWIG 513 (696)
T ss_pred ccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc---ceeHHHHHHHHHHHHHHH
Confidence 111 1122456778999999999999999999999999976 234455555555554443
No 135
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.76 E-value=2.5e-05 Score=79.15 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=54.5
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhccC
Q 003732 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (799)
Q Consensus 699 idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~~ 758 (799)
..+.++|.++++++.+++|+.++..+|.++++|..||+|+ ++++|++|..|+.++..+.
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g 230 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANG 230 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcC
Confidence 4567789999999999999999999999999999999998 5999999999999988764
No 136
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.72 E-value=4.2e-05 Score=68.25 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=43.2
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHHhhhhHh
Q 003732 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (799)
Q Consensus 709 p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIITr~DLl~~~ 755 (799)
++++++++++.++.++|.+.+.+++||+|++ |+++|+||++|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 4789999999999999999999999999975 8999999999998755
No 137
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.71 E-value=3.5e-05 Score=88.17 Aligned_cols=114 Identities=15% Similarity=0.224 Sum_probs=92.1
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (799)
.+++++|+++ +.++++++++.++.+.|+++++..+||||+ +++++|+|+.+|+++.+.+..
T Consensus 195 ~~v~~im~~~-~~~v~~~~~~~eal~~m~~~~~~~lpVVD~----~g~lvGiIt~~Dil~~l~~~~-------------- 255 (449)
T TIGR00400 195 EILSSIMRSS-VFSIVGVNDQEEVARLIQKYDFLAVPVVDN----EGRLVGIVTVDDIIDVIQSEA-------------- 255 (449)
T ss_pred CcHHHHhCCC-CeeECCCCCHHHHHHHHHHcCCCEEeEEcC----CCeEEEEEEHHHHHHHHHhhh--------------
Confidence 4699999998 999999999999999999999999999998 789999999999998765422
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003732 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (799)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lv 743 (799)
.+| +|+....+..+++.+.++...+.++++..++|. .+.
T Consensus 256 ---------------------~ed----------------~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~ 294 (449)
T TIGR00400 256 ---------------------TED----------------FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVS 294 (449)
T ss_pred ---------------------HHH----------------HHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHH
Confidence 012 255555555567788999999999999999885 578
Q ss_pred EEEeHHhhhhHhccC
Q 003732 744 GLITRKDLLIEDGED 758 (799)
Q Consensus 744 GIITr~DLl~~~~~~ 758 (799)
|++| ..+++.+.+.
T Consensus 295 ~~~t-~~ii~~f~~~ 308 (449)
T TIGR00400 295 STFT-ATIISNYEDL 308 (449)
T ss_pred HHHH-HHHHHHHHHH
Confidence 8888 7777765443
No 138
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.65 E-value=5e-05 Score=71.48 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=56.7
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhccCC
Q 003732 697 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (799)
Q Consensus 697 ~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~~~ 759 (799)
..+..+.+|+++.+.|.+++++.++.++|++.|...+||+++ ++++|-||..|+.+...+..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence 356667779999999999999999999999999999999998 99999999999999887664
No 139
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00021 Score=65.84 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
++.++++++++.++.++|.+.+.+++||+|++|+++|++|++|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 4578999999999999999999999999998899999999999998654
No 140
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00015 Score=65.85 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=50.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
.++.++|..+ +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|+++
T Consensus 56 ~~v~~~~~~~-~~~v~~~~~l~~al~~m~~~~~~~lpVvd~----~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVP-VPIVYCDSKVTDLLRIFRETEPPVVAVVDK----EGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecC-CcEECCCCcHHHHHHHHHHcCCCeEEEEcC----CCeEEEEEEhHHhhc
Confidence 4688999888 899999999999999999999999999997 689999999999864
No 141
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.00014 Score=64.47 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|++|.+|+.+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence 567899999999999999999999999999889999999999998754
No 142
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.51 E-value=0.00025 Score=52.92 Aligned_cols=47 Identities=30% Similarity=0.566 Sum_probs=42.6
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 709 p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
+.++.+++++.++.+.|++.+.+++||++++++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46789999999999999999999999999889999999999997653
No 143
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.44 E-value=0.00025 Score=64.70 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
..+++++|.++ ++++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|+++
T Consensus 58 ~~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRA-VVSCRPGDLLHDVWQVMKQRGLKNIPVVDE----NARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCeEEEECC----CCcEEEEEEhHhhcc
Confidence 35788999988 999999999999999999999999999997 689999999999853
No 144
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.40 E-value=0.00042 Score=65.64 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
.+.++.+++++.++.+.|.+.+..++||+|++|+++|+||.+|++++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 45789999999999999999999999999998999999999999987653
No 145
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.38 E-value=0.00018 Score=78.99 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=51.9
Q ss_pred ccccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 698 YIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 698 ~idl~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
.+.++++|++ ++.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 4456777987 8999999999999999999999988888998899999999999987554
No 146
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.34 E-value=0.0002 Score=78.39 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=52.9
Q ss_pred cccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 699 IDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 699 idl~~~m~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
..++++|+++ +.++++++++.++.+.|++.+..++||+|++|+++|+||.+|+.+...
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence 5677789998 999999999999999999999999999999899999999999987654
No 147
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.30 E-value=0.0007 Score=63.04 Aligned_cols=51 Identities=18% Similarity=0.399 Sum_probs=46.1
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 707 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
+++.++++++++.++.+.|++.+.+++||+|++++++|+||.+|+++...+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence 456889999999999999999999999999988999999999999976543
No 148
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.27 E-value=0.00054 Score=63.14 Aligned_cols=50 Identities=28% Similarity=0.475 Sum_probs=45.6
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 707 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
+++.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhc
Confidence 56788999999999999999999999999998899999999999987654
No 149
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.26 E-value=0.00041 Score=63.65 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=49.8
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC---ceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE---RLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~---~~lvGiItr~dL~~ 643 (799)
..+++++|.+ + +.++++++++.++++.|.+++++.+||+|+ + ++++|+|+++++.+
T Consensus 57 ~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~----~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGVIMTRMPN-ITTTTPEESVLEAAKKLIEHQVDSLPVVEK----VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHHHhCCCCC-cEEECCCCcHHHHHHHHHHcCCCEeeEEeC----CCccceEEEEEEhhheec
Confidence 5668889985 6 889999999999999999999999999998 4 69999999999854
No 150
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.25 E-value=0.00064 Score=60.94 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=44.2
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 707 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
+++.++++++++.++.+.|.+.+.+++||+|++++++|+||.+|+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 3457889999999999999999999999999889999999999998754
No 151
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.22 E-value=0.0011 Score=76.62 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=52.1
Q ss_pred cchhhhcc-CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHH
Q 003732 584 MTAKEACG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (799)
Q Consensus 584 l~v~diM~-~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL 645 (799)
.+++|+|+ ++ ++++++++++.++.+.|.+++.+.+||+|+ +++++|+|+++|+++.+
T Consensus 147 ~~V~dim~~~~-~v~v~~~~sl~eal~~m~~~~~~~lpVVDe----~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKER-LVTVPEGTTLEEALELLHEHRIEKLPVVDD----NGRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCcEEEEEEhHHhhhhh
Confidence 46889998 67 899999999999999999999999999998 78999999999997754
No 152
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.19 E-value=0.0011 Score=59.71 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=45.3
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 707 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
+++.++++++++.++.+.|.+.+..++||+|++|+++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 45678999999999999999999999999998899999999999987654
No 153
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.001 Score=60.08 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=45.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 46789999999999999999999999999988999999999999886544
No 154
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.18 E-value=0.00096 Score=59.60 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=43.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
++.++++++++.++.+.|.+.+.+++||+|++|+++|++|++|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence 567899999999999999999999999999889999999999998753
No 155
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.13 E-value=0.00094 Score=60.53 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=49.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
.++.++|.++ +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|++
T Consensus 58 ~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRN-PITAKVGSSREEILALMRERSIRHLPILDE----EGRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCC-CEEEcCCCCHHHHHHHHHHCCCCEEEEECC----CCCEEEEEEhHHhc
Confidence 4688999888 899999999999999999999999999997 68999999999985
No 156
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.13 E-value=0.001 Score=60.00 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=45.1
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 707 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
+++.++++++++.++.+.|++.+.+++||+|++++++|+|+++|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF 50 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh
Confidence 35678999999999999999999999999998899999999999987654
No 157
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.00056 Score=63.57 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=44.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
.+.++++++++.++.+.|.+.+...+||+|++|+++|+|+.+|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 3578999999999999999999999999998899999999999998664
No 158
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.0013 Score=59.76 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=44.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
.+.++++++++.++.+.|++.+.+.+||+|++++++|+++.+|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 3578999999999999999999999999998899999999999988664
No 159
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.0015 Score=58.91 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=45.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
++.++++++++.++.+.|.+.+..++||+|++++++|++|++|+++...+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence 45678999999999999999999999999988999999999999986543
No 160
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.08 E-value=0.0014 Score=59.51 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=45.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
++.++.+++++.++.+.|.+.+...+||+|++|+++|+++.+|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~ 51 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEA 51 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhc
Confidence 46788999999999999999999999999998999999999999986543
No 161
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.08 E-value=0.0011 Score=59.62 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=51.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~l 644 (799)
+.+++++|.++ +.++++++++.++.+.|.+++...+||+|+ +++++|+|+++|+++.
T Consensus 52 ~~~v~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTD-VISVSADDDQEEVARLFEKYDLLALPVVDE----EGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCC-CeEEcCCCCHHHHHHHHHHcCCceeeeECC----CCcEEEEEEhHHhhhh
Confidence 35688999888 899999999999999999999999999987 6899999999999753
No 162
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.07 E-value=0.00054 Score=72.95 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=53.5
Q ss_pred ccccccccCCC-CeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 698 YIDLGPFLNPS-PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 698 ~idl~~~m~~~-p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
.+.++++|+++ +.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 46777889888 899999999999999999999999999998899999999999988653
No 163
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.06 E-value=0.00071 Score=77.53 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=51.0
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 698 ~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
.+..+++|.++|.++++++++.++.++|++.+.+.+||+|++++++|+||.+|+..
T Consensus 88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG 143 (479)
T ss_pred hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence 34556679999999999999999999999999999999999899999999999854
No 164
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.06 E-value=0.0011 Score=60.17 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=49.4
Q ss_pred ccchhhhccCCceEEecCc--ccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRI--IKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~--~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
+.++.++|.++ +.+++++ +++.++++.|.+++...+||+|+ +++++|+|+++|+++
T Consensus 57 ~~~i~~~~~~~-~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~----~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQP-VVTLQESEIQDIFTALSLFRQHQIRHLPVLDD----QGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCC-cEEEecccccCHHHHHHHHHHhCCceEEEEcC----CCCEEEEEEhHHhhc
Confidence 35788999888 8888876 68999999999999999999998 689999999999864
No 165
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0015 Score=58.99 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=49.7
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
..++.++|.++ +.++++++++.++++.|.+++...+||+|+ ++++|+|+++|+..
T Consensus 57 ~~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-----~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPE-PIVASPDDSIDEVRRLMVERHLRYLPVLDG-----GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCC-CeEECCCCCHHHHHHHHHHcCCCeeeEEEC-----CEEEEEEEHHHhhc
Confidence 35788999888 899999999999999999999999999985 79999999999864
No 166
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.03 E-value=0.0013 Score=59.98 Aligned_cols=57 Identities=16% Similarity=0.383 Sum_probs=51.8
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
...++.++|.++ +.++++++++.++++.|.+.+.+.+||+|+ +++++|+|++.|+++
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRD-PITVSPDASVEEAAELMLERKISGLPVVDD----QGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCC-CeEeCCCCcHHHHHHHHHHcCCCceeEECC----CCcEEEEEEHHHhhh
Confidence 356789999988 999999999999999999999999999987 689999999999864
No 167
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.03 E-value=0.0015 Score=59.09 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=50.5
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
...++.++|.++ +.++++++++.++++.|.+++.+.+||+|+ +++++|++++.|+.
T Consensus 56 ~~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNSP-VITIDANDSIAKARWLMSNNNISRLPVLDD----KGKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccCC-ceEECCCCcHHHHHHHHHHcCCCeeeEECC----CCeEEEEEEHHHhh
Confidence 345788999888 999999999999999999999999999987 68999999999985
No 168
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.03 E-value=0.0014 Score=58.88 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=50.7
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
+.+++++|.++ +.++++++++.++.+.|.+++.+.+||+|+ +++++|+++++|+..
T Consensus 52 ~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKN-PITVNPKTSVASVAHMMIWEGIEMLPVVDD----NKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCC-CeEECCCCCHHHHHHHHHHcCCCeeeEEcC----CCCEEEEEEHHHhhc
Confidence 45688999888 899999999999999999999999999997 689999999999853
No 169
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.01 E-value=0.0011 Score=61.34 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=47.0
Q ss_pred hhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 586 AKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 586 v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
+.++|.++ +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|+.
T Consensus 70 ~~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSD-VISINGDQPLIDALHLMHNEGISSVAVVDN----QGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCC-ceEeCCCCCHHHHHHHHHHcCCceEEEECC----CCcEEEEEeHHHhh
Confidence 34578788 999999999999999999999999999988 68999999999985
No 170
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.00 E-value=0.0016 Score=59.15 Aligned_cols=55 Identities=11% Similarity=0.299 Sum_probs=49.9
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
..++.++|.++ +.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|++.
T Consensus 59 ~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTKP-LISVSPDMDIKYCARLMERTNIRRAPVVEN-----NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCEeeEeeC-----CEEEEEEEHHHhhc
Confidence 35788999888 999999999999999999999999999986 78999999999853
No 171
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0017 Score=60.29 Aligned_cols=46 Identities=37% Similarity=0.602 Sum_probs=42.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhh
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~ 753 (799)
++.++.+++++.++.+.|++.+.+++||+|++|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4578999999999999999999999999998899999999999986
No 172
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.97 E-value=0.00094 Score=76.44 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=52.0
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC---CeEEEEEeHHhhhhH
Q 003732 697 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLIE 754 (799)
Q Consensus 697 ~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~---g~lvGIITr~DLl~~ 754 (799)
...++++.|.+++.++++++++.++.++|++.+.+.+||+|++ ++++|+||++|++..
T Consensus 78 ~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~ 138 (450)
T TIGR01302 78 RVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV 138 (450)
T ss_pred hhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence 3456667789999999999999999999999999999999987 799999999999753
No 173
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.97 E-value=0.0016 Score=61.26 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 707 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
+++.++.+++++.++.+.|.+.+.+++||+|++++++|+|+++|+.+...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~ 51 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE 51 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence 45678999999999999999999999999998899999999999987654
No 174
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.96 E-value=0.002 Score=61.01 Aligned_cols=56 Identities=14% Similarity=0.390 Sum_probs=50.7
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
...+++++|.++ +..+.+++++.++.+.|.+++++.+||+++ ++++|+|+++|+.+
T Consensus 79 ~~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTEE-IITVSPNDDVVDAAKLMLEANISGLPVVDN-----DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCCC-CeEECCCCCHHHHHHHHHHcCCCEEEEEeC-----CEEEEEEEHHHHhh
Confidence 356799999988 899999999999999999999999999986 79999999999854
No 175
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.95 E-value=0.0022 Score=59.63 Aligned_cols=48 Identities=29% Similarity=0.435 Sum_probs=43.6
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
++.++.+++++.++.++|.+.+.+.+||+|++++++|+||++|+.+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 346789999999999999999999999999989999999999998754
No 176
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.94 E-value=0.0018 Score=59.66 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=44.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHHhhhhHhcc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIITr~DLl~~~~~ 757 (799)
++.++.+++++.++.++|.+.+.+.+||+|++ |+++|+|+++|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~ 52 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG 52 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence 45778999999999999999999999999987 999999999999976643
No 177
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.93 E-value=0.002 Score=57.58 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=49.8
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
.+++++|.++ +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+.+++++
T Consensus 52 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSKD-LVVAVPEMDIMDAARVMFRTGISKLPVVDE----NNNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCCC-CeEECCCCCHHHHHHHHHHhCCCeEeEECC----CCeEEEEEEHHHhhc
Confidence 4688999888 899999999999999999999999999998 689999999999853
No 178
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.93 E-value=0.0025 Score=57.29 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~ 50 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR 50 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc
Confidence 4678899999999999999999999999998 999999999999986543
No 179
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.91 E-value=0.0016 Score=74.97 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=54.1
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 698 ~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
.++++++|++++.++.+++++.++.+.|++.+.+.+||+|++++++|+||.+|+++...+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence 456777899999999999999999999999999999999988999999999999986543
No 180
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.91 E-value=0.0018 Score=58.63 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 4678899999999999999999999999998899999999999987553
No 181
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.91 E-value=0.0018 Score=59.24 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=43.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHh
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~ 755 (799)
++.++++++++.++.+.|.+.+.+++||+|++++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 457889999999999999999999999999989999999999998754
No 182
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.90 E-value=0.0021 Score=58.39 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcC-CCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~g-lr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
+..++++++++.++.+.|.+.+ .+++||+|++++++|+||.+|+++...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 3467899999999999998775 889999998899999999999998664
No 183
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.90 E-value=0.0023 Score=57.50 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=44.8
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 707 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
+++.++++++++.++.+.|.+.+.+++||+|+ ++++|+++++|+.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~ 50 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAE 50 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhc
Confidence 35678999999999999999999999999998 999999999999875543
No 184
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0019 Score=59.22 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=51.5
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
...++.++|.++ +.++++++++.++.+.|.+.+.+.+||+|+ +++++|+|+++|+..
T Consensus 65 ~~~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTD-VLTVTPDTPLREAAEIMVENKIGCLPVVDD----KGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCC-CeEeCCCCcHHHHHHHHHHcCCCeEEEEcC----CCCEEEEEEHHHhhc
Confidence 456789999888 999999999999999999999999999987 689999999999864
No 185
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0022 Score=58.89 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=51.4
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
...++.++|.++ +.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++++|++.
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTP-VYSVTPDDSIATAVELMLEHDIGRLPVVNE----KDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCeeeEEcC----CCcEEEEEEhHHhhc
Confidence 456788999888 999999999999999999999999999997 689999999999864
No 186
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.88 E-value=0.0017 Score=58.62 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=49.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
.++.++|.++ +.++++++++.++++.+.+++.+.+||+++ +++++|+|+.+|++
T Consensus 58 ~~v~~i~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----~~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTPN-PVCATSDTPVLEALHLMVQGKFRHLPVVDK----SGQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCCC-CeEEcCCCCHHHHHHHHHHcCCCcccEECC----CCCEEEEEEHHHhc
Confidence 5788999888 899999999999999999999999999997 68999999999985
No 187
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.87 E-value=0.0022 Score=58.33 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=47.9
Q ss_pred cchhhhccCCceEEecC--cccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 584 MTAKEACGAQKVVSLPR--IIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~--~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
..++++|..+ ..++.. ++++.++++.|++++...+||+|+ +++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~----~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPR-EVLVVAPTGITLEEANEILRESKKGKLPIVND----DGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCC-ceEEECCCCCCHHHHHHHHHhcCCCceeEECC----CCeEEEEEEHHHhhc
Confidence 4578999887 677755 999999999999999999999987 689999999999853
No 188
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.87 E-value=0.0019 Score=58.13 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=49.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
.++.++|.++ +.++++++++.++.+.|.+++.+.+||+|+ +++++|+++++|+..
T Consensus 56 ~~v~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRD-FPTVSPSATLDAVLRLMQQGGAPAVPVVDG----SGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCC-CcEECCCCcHHHHHHHHHhcCCceeeEEcC----CCCEEEEEEHHHhhc
Confidence 3588899888 999999999999999999999999999987 689999999999853
No 189
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.86 E-value=0.0022 Score=57.87 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=50.0
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
.++.++|.++ +.++++++++.++++.+.+++...+||+|+ +++++|+|++.|++.
T Consensus 59 ~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRN-PKTIDPDALAAEALELMEENKITALPVVDD----NGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccC-CeEECCCCcHHHHHHHHHHcCCCEEEEECC----CCCEEEEEEHHHhhc
Confidence 4688999988 899999999999999999999999999987 689999999999853
No 190
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.85 E-value=0.0027 Score=57.30 Aligned_cols=54 Identities=11% Similarity=0.379 Sum_probs=49.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
+.++.++|.++ +.++++++++.++.+.|.+.+.+.+||+|+ + +++|+|+++|++
T Consensus 57 ~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~-~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMSTP-LITIDPNASLNEAAKLMAKHGIKRLPVVDD----D-ELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCCC-cEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C-EEEEEEEhhhhh
Confidence 45788999888 899999999999999999999999999987 4 999999999985
No 191
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.83 E-value=0.0026 Score=57.15 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=50.4
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
..++.++|.++ +.++++++++.++++.|.+.+...+||+|+ ++++.|+|+++|+.+
T Consensus 55 ~~~v~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~----~~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSP-LLTVPADTSLYDARQLMREHGIRHLVVVDD----DGELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCC-ceEECCCCCHHHHHHHHHHcCCeEEEEECC----CCcEEEEEEhHHhhc
Confidence 46788999888 999999999999999999988889999997 689999999999853
No 192
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.83 E-value=0.0038 Score=69.71 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=44.0
Q ss_pred cCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 705 LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 705 m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
+.+...++++++++.+++....+.+.. ++|+|+ |+++|+|++.++++++.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 331 LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 345567899999999999999998876 889987 999999999999988743
No 193
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.82 E-value=0.0029 Score=56.67 Aligned_cols=49 Identities=31% Similarity=0.365 Sum_probs=44.3
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhcc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~ 757 (799)
++.++++++++.++.+.|.+.+.+++||+|+ ++++|++|++|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 3578899999999999999999999999998 999999999999987543
No 194
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.81 E-value=0.0024 Score=73.67 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=52.5
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHH
Q 003732 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (799)
Q Consensus 583 ~l~v~diM~~--~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~l 644 (799)
+.+++|+|++ + ++++++++++.++.+.|.+++.+.+||||+ +++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~-~itv~~d~~l~eAl~lM~e~~i~~LPVVD~----~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEK-LVTANEGTTLKEANDIIWDHKLNTLPIVDK----NGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCC-eEEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCeEEEEEEhHHHHhc
Confidence 4679999996 6 899999999999999999999999999997 6899999999999774
No 195
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.80 E-value=0.0033 Score=56.55 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=45.6
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHHhhhhHhccC
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGED 758 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIITr~DLl~~~~~~ 758 (799)
+..++++++++.++.+.|.+.+.+++||+|++ ++++|++|.+|+++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~ 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC
Confidence 35788999999999999999999999999998 9999999999999876543
No 196
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.79 E-value=0.0026 Score=57.23 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=49.9
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
+.++.++|.++ +.++++++++.++++.|.+++.+.+||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAP-PITIPPDATVFEALLLMLERGIHHLPVVDD-----GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCC-CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-----CEEEEEEEHHHhhc
Confidence 35688999888 999999999999999999999999999986 79999999999864
No 197
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.79 E-value=0.0037 Score=46.37 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=42.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHH
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL 645 (799)
+.++++.+++.++.+.|++++++.+||+++ +++++|+++.+++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE----EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC----CCeEEEEEEHHHHHHhh
Confidence 567889999999999999999999999987 68999999999997654
No 198
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.79 E-value=0.0032 Score=56.61 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=49.7
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
..++.++|.++ +.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+++|++.
T Consensus 55 ~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~Gvvt~~di~~ 109 (110)
T cd04595 55 HAPVKDYMSTD-VVTVPPDTPLSEVQELMVEHDIGRVPVVED-----GRLVGIVTRTDLLR 109 (110)
T ss_pred cCcHHHHhcCC-CEEECCCCcHHHHHHHHHHcCCCeeEEEeC-----CEEEEEEEhHHhhc
Confidence 46788999988 999999999999999999999999999985 79999999999853
No 199
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.78 E-value=0.0059 Score=68.07 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=94.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (799)
.+.+.+..++-++...+.+++++.+||.|.+ .+.+..+++.+-+++.+.......+.+.
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~---~~~v~~ilt~~rIl~~l~~~~~~~~~~~------------------ 222 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPE---TGEVLYILTQRRILKFLWLNGRLLPLPS------------------ 222 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeeccc---ccceeeehhHHHHHHHHHHhhcccccHH------------------
Confidence 4888899999999999999999999999942 5799999999999887765330000000
Q ss_pred cccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
-...++.|+.+. +......+.+++++.+|+++|++.++..+||||+.|+.+|++++.|+...
T Consensus 223 -----~l~~s~~dl~ig-------------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l 284 (381)
T KOG1764|consen 223 -----LLSKSLSDLGIG-------------TWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHL 284 (381)
T ss_pred -----HhhCCHHHhCcc-------------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhh
Confidence 001123333211 12245788999999999999999999999999999999999999999986
Q ss_pred hccC
Q 003732 755 DGED 758 (799)
Q Consensus 755 ~~~~ 758 (799)
..+.
T Consensus 285 ~~~~ 288 (381)
T KOG1764|consen 285 AREG 288 (381)
T ss_pred hhcC
Confidence 6543
No 200
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.78 E-value=0.0038 Score=55.47 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=45.6
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhccC
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~~ 758 (799)
++.+++.++++.++.+.|.+.+.+++||+|++++++|+++++|+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence 356789999999999999999999999999989999999999999877544
No 201
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.77 E-value=0.0026 Score=56.98 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=48.2
Q ss_pred ccchhhhccCCceEEecC-cccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPR-IIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~-~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
+.++.++|.++ +..+.+ ++++.++++.|.+++++.+||+|+ +++++|+|+++|++.
T Consensus 53 ~~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE-NLLTTVEGTSLEEALELLHEHKIEKLPVVDD----EGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC-ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC----CCCEEEEEEhhhhhc
Confidence 45788999876 666666 999999999999999999999997 689999999999853
No 202
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.77 E-value=0.0017 Score=74.86 Aligned_cols=53 Identities=17% Similarity=0.427 Sum_probs=47.7
Q ss_pred cccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC---CeEEEEEeHHhhhh
Q 003732 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLI 753 (799)
Q Consensus 701 l~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~---g~lvGIITr~DLl~ 753 (799)
.++.|.++|.++++++++.++.++|++.+.+.+||+|++ ++++|+||.+|+..
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~ 153 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF 153 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh
Confidence 445578899999999999999999999999999999973 79999999999963
No 203
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0023 Score=67.56 Aligned_cols=113 Identities=22% Similarity=0.221 Sum_probs=79.5
Q ss_pred hcccchhhhccCCc-eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003732 581 MRQMTAKEACGAQK-VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (799)
Q Consensus 581 l~~l~v~diM~~~k-vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~~~~ 659 (799)
.+-++++++|.+.. ...-.+...-..+.+.+++.....+.+++. .++.+|++...++...
T Consensus 271 ~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~----~~~~~g~v~~~~~~~~--------------- 331 (386)
T COG4175 271 SRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDR----GNKFVGVVSIDSLVKA--------------- 331 (386)
T ss_pred hheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhc----cCceeeEEeccchhcc---------------
Confidence 34567888887420 111122223345666666666555656665 5678888887666331
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003732 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (799)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~ 739 (799)
.+++.+.++..++++.+.....++.+.. ++|+|++
T Consensus 332 --------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~ 366 (386)
T COG4175 332 --------------------------------------------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDED 366 (386)
T ss_pred --------------------------------------------cccccccccCccchHHHHHHHHhcCCCc-eeEEcCC
Confidence 1455667889999999999999988874 8999999
Q ss_pred CeEEEEEeHHhhhhHhcc
Q 003732 740 SRVIGLITRKDLLIEDGE 757 (799)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (799)
++++|+|++.++++++.+
T Consensus 367 ~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 367 GRYVGIISRGELLEALAR 384 (386)
T ss_pred CcEEEEecHHHHHHHHhc
Confidence 999999999999988754
No 204
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.76 E-value=0.0025 Score=57.55 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=49.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
.++.++|.++ +.++++++++.++.+.|.+++...+||+|+ +++++|+|++.|+.+
T Consensus 58 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRG-VVTVTEDDDVDEAARLMREHQVRRLPVVDD----DGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCC-ccEECCCCCHHHHHHHHHHcCCCeeeEECC----CCcEEEEEEHHHhhc
Confidence 3588999888 899999999999999999999999999987 689999999999854
No 205
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.75 E-value=0.0036 Score=56.42 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=49.5
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
..+++++|.++ +.++++++++.++++.|.+++...+||+|+ ++++|+|+++|+..
T Consensus 56 ~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFP-LITVDPDDFLFNALLLMTRHRIHRVVVREG-----GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCC-cEEECCCCcHHHHHHHHHHhCccEEEEeeC-----CEEEEEEEhHHhhc
Confidence 35688999888 999999999999999999999999999986 79999999999854
No 206
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.74 E-value=0.003 Score=57.68 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=42.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcC-CCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~g-lr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
+++++++++++.++.+.|++.+ .+.+||+|+ |+++|+|+.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 4567899999999999999887 889999999 99999999999987543
No 207
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.0034 Score=57.50 Aligned_cols=57 Identities=26% Similarity=0.520 Sum_probs=51.0
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 581 l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
....++.++|.++ +.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+++|+++
T Consensus 64 ~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTRP-VITIEPDTSVSDVASLMLENNIGGLPVVDD-----GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccCC-ceEECCCCcHHHHHHHHHHcCCCcccEEEC-----CEEEEEEEHHHhhc
Confidence 3456788999888 999999999999999999999999999986 79999999999853
No 208
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.0042 Score=58.11 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=50.7
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 581 l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
+...++.++|.++ +..+++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+++
T Consensus 75 ~~~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKK-VITVDEDTTIEDVARIMSKKNIKRLPVVDD-----GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCC-ceEECCCCcHHHHHHHHHHCCCCeeEEEEC-----CEEEEEEEHHHhhc
Confidence 3345789999988 999999999999999999999999999986 79999999999864
No 209
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.70 E-value=0.0038 Score=56.60 Aligned_cols=52 Identities=19% Similarity=0.384 Sum_probs=48.4
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhh-CCCCeeEEeeCCCCCCc-eEEEEEeHHHH
Q 003732 585 TAKEACGAQKVVSLPRIIKVADVVSILRT-NKHNGFPVIDHSRNGER-LVIGLVLRSHL 641 (799)
Q Consensus 585 ~v~diM~~~kvv~l~~~~tv~~~~~~L~~-~~~~~~PVVd~~~~~~~-~lvGiItr~dL 641 (799)
++.++|+++ ++++.++.++.++.+.|.+ .+++.+||+|+ ++ +++|+++++|+
T Consensus 63 ~v~~v~~~~-~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~----~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKP-VVTVDPDTPLEEALELMVERHKIRRLPVVDD----DGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCC-cEEECCCCCHHHHHHHHHHHcCcCeEEEEEC----CCCeEEEEEEHHHc
Confidence 689999988 9999999999999999999 69999999998 54 99999999987
No 210
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.70 E-value=0.0037 Score=56.31 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=48.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
.++.++|.++ +.++++++++.++.+.|.+++...+||+|+ ++++|+|++.|++
T Consensus 57 ~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQD-VFYVNEEDTIDEALDIMREKQIGRLPVVDD-----NKLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcCC-cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-----CEEEEEEEhHHhc
Confidence 4688899988 999999999999999999999999999986 7899999999985
No 211
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.70 E-value=0.0036 Score=71.77 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=54.2
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhc
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~ 647 (799)
.+++++|+++ ++++++++++.++++.|.+++.+.+||||+ +++++|+|+++||++....
T Consensus 146 ~~V~dIMt~~-litv~~~~sL~eAl~lM~~~~i~~LPVVD~----~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTD-LVTAPADTEPRKAFDLLEHAPRDVAPLVDA----DGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCC-ceEeCCCCcHHHHHHHHHHcCCCEEEEEcC----CCeEEEEEEHHHHHHHHhC
Confidence 4689999999 999999999999999999999999999997 6899999999999886554
No 212
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.70 E-value=0.004 Score=55.34 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=48.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~ 642 (799)
-++.++|.++ +.++++++++.++++.|.+++.+.+||+|+ ++++|+|++++++
T Consensus 51 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTRE-VVTISPEASLLEAKRLMEEKKIERLPVLRE-----RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCC-CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-----CEEEEEEEHHHhc
Confidence 3578899888 999999999999999999999999999986 7999999999984
No 213
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.69 E-value=0.002 Score=72.56 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=56.3
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhccCCcchh
Q 003732 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVE 763 (799)
Q Consensus 700 dl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~~~~~~~~ 763 (799)
.+.+.+..+|++|++++|+.+|.+.|.+.|...+.|+|++++..||||++|+.+....+..+.+
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~ 213 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKT 213 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcc
Confidence 3445588999999999999999999999999999999999999999999999998876554443
No 214
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.67 E-value=0.0035 Score=56.35 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=45.0
Q ss_pred hccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 589 ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 589 iM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
+|.++ +.++++.+++.++.+.|++++.+.+||+++ ++++|+|+++|+.+
T Consensus 56 ~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~-----~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPS-PFTVSPRTSLEKVHQLFRKLGLRHLLVVDE-----GRLVGIITRKDLLK 104 (105)
T ss_pred hccCC-CceECCCCcHHHHHHHHHHcCCCEEEEEEC-----CeEEEEEEhhhhhc
Confidence 78888 899999999999999999999999999964 89999999999854
No 215
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.62 E-value=0.0042 Score=55.49 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=47.6
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 585 ~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
++.++|.++ ..++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+..
T Consensus 51 ~~~~~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-----~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRG-IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-----GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcC-CcEEcCCCCHHHHHHHHHHcCcceEEEEEC-----CEEEEEEEHHHhhc
Confidence 467788887 899999999999999999999999999975 79999999999853
No 216
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.61 E-value=0.0024 Score=72.16 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=49.2
Q ss_pred cccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHHhhhhHhc
Q 003732 701 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (799)
Q Consensus 701 l~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIITr~DLl~~~~ 756 (799)
++++|.+ ++++++.+++++++.+.+.+.+..++||.+++ ++++|+|+.+|++....
T Consensus 193 v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 193 TKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred eeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 4445886 68999999999999999999999999999875 69999999999997554
No 217
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.57 E-value=0.0043 Score=59.20 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhHhc
Q 003732 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 708 ~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~~~ 756 (799)
++.++++++++.++.+.|++.+...+||+|+ ++++|++|++|+++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV 49 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHH
Confidence 5678999999999999999999999999998 99999999999988654
No 218
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.51 E-value=0.0031 Score=72.87 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=46.1
Q ss_pred ccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecC---CCeEEEEEeHHhhhh
Q 003732 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR---ASRVIGLITRKDLLI 753 (799)
Q Consensus 704 ~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~---~g~lvGIITr~DLl~ 753 (799)
-|.++|+++++++++.++.++|.+.+.+.+||+|+ +++++|+||.+|+..
T Consensus 105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~ 157 (505)
T PLN02274 105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF 157 (505)
T ss_pred cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence 37789999999999999999999999999999987 489999999999965
No 219
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.49 E-value=0.0058 Score=56.06 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=50.1
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
.++.++|.++ ++++++++++.++.+.|.+++.+.+||+|+ +++++|+++++|++.
T Consensus 67 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~----~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRD-PITVSPDTPVDEASKLLLENSISCLPVVDE----NGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCC-CeeeCCCCcHHHHHHHHHHcCCCeEeEECC----CCCEEEEEEHHHhhh
Confidence 4688999988 999999999999999999999999999987 689999999999864
No 220
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.43 E-value=0.0065 Score=64.61 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=56.9
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhc
Q 003732 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (799)
Q Consensus 581 l~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~ 647 (799)
.++.+...+|+++ +.++.+.+++..+.+.|--.+++-+||+|+ +.+++|+|+|+|+++.|+.
T Consensus 246 ~~~t~ieKVMtkn-p~tv~~~tsVAsvaq~MiwE~iem~PVv~~----n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTKN-PITVRAKTSVASVAQMMIWEGIEMLPVVDS----NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhccC-CeeecccchHHHHHHHHHhccceeeeEEcC----CceEEEEEEHHHHHHHHHH
Confidence 3466788899999 999999999999999999999999999999 7899999999999998865
No 221
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.13 E-value=0.0088 Score=64.47 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=49.5
Q ss_pred ccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHHhhhhHh
Q 003732 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (799)
Q Consensus 700 dl~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIITr~DLl~~~ 755 (799)
.++++|++ ...+++++++++++.+.+++.+..++||++++ ++++|+|+.+|++...
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 44556987 58899999999999999999999999999876 7999999999998654
No 222
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.94 E-value=0.018 Score=51.27 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=47.3
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 585 ~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
.+.++|.++ +.++++.+++.++.+.|.+++.+.+||+|+ ++++|+|+++|+..
T Consensus 53 ~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRD-PPTVSPDDDVKEAAKLMVENNIRRVPVVDD-----GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCC-CceECCCCCHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHhhc
Confidence 467888888 899999999999999999999999999986 69999999999853
No 223
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.03 Score=63.48 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=56.8
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhc
Q 003732 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (799)
Q Consensus 582 ~~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~ 647 (799)
.+.+++|+|.++ ++++.+.++-+++.+.+++++.-..||||+ +++++|+|+.+|++..++.
T Consensus 194 ~~~~i~~im~~~-~~~V~~~~dqeevA~~~~~ydl~a~PVVd~----~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 194 PDELLKDLMEDD-VVSVLADDDQEEVARLFEKYDLLAVPVVDE----DNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred cHhHHHHHhccc-ceeecccCCHHHHHHHHHHhCCeecceECC----CCceeeeeeHHHHHHHHHH
Confidence 356789999999 999999999999999999999999999999 7999999999999998765
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.62 E-value=0.067 Score=59.46 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=51.2
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhc
Q 003732 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (799)
Q Consensus 585 ~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~ 647 (799)
.+.+.|.++ +.++++++++.+++..+.++++. +||+|+ +++++|+|++.+++..+..
T Consensus 303 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~----~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDD-IYTVDAGTLLRETVRKVLKAGIK-VPVVDE----DQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccC-CceECCCCcHHHHHHHHHhCCCC-EEEECC----CCcEEEEEEHHHHHHHHHh
Confidence 466778777 88999999999999999999998 999998 7999999999999988765
No 225
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.96 E-value=0.11 Score=56.59 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=52.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHH
Q 003732 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (799)
Q Consensus 583 ~l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~l 644 (799)
+..+.|+|+++ .++.+...+++++-++|++++...+||||+ +++++-+|+|.||.+.
T Consensus 170 ~~~~~~vmt~~-~~~~~~gi~l~~~neiL~~~kkGkl~iv~~----~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKN-PVTGAQGITLKEANEILKKIKKGKLPVVDD----KGELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccc-cccccccccHHHHHHHHHhhhcCCcceecc----CCceeeeeehhhhhhh
Confidence 46688999998 788999999999999999999999999999 7999999999999653
No 226
>PRK11573 hypothetical protein; Provisional
Probab=92.81 E-value=0.23 Score=56.37 Aligned_cols=55 Identities=5% Similarity=0.064 Sum_probs=46.8
Q ss_pred cccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHHhhhhHh
Q 003732 701 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (799)
Q Consensus 701 l~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~-g~lvGIITr~DLl~~~ 755 (799)
++++|.+ ....++.+++++++.+.+++.+..++||.+++ +.++|+|..||++...
T Consensus 189 v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 189 VDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM 246 (413)
T ss_pred hhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence 3344755 46788999999999999999999999998765 8899999999999754
No 227
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.67 E-value=0.23 Score=55.93 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=50.5
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcc
Q 003732 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (799)
Q Consensus 585 ~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~ 648 (799)
.+++.+.++ ..++++++++.+++..+.++.+. +||||+ +++++|+|++.+++..+..+
T Consensus 338 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~----~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAALIDA-PLAVDAQTPLSELLSHVGQAPCA-VPVVDE----DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhhccC-CceeCCCCCHHHHHHHHHhCCCc-EEEECC----CCcEEEEEEHHHHHHHHHhc
Confidence 466677777 88999999999999999887765 999998 79999999999999988654
No 228
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.81 E-value=1.3 Score=51.19 Aligned_cols=77 Identities=22% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHHhhhhhhcccccccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhhhhhcCccch
Q 003732 172 IGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGG 251 (799)
Q Consensus 172 ~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~~~~~~~~~f~~~~~~r~lv~~G~aAgvaaaF~APi~G 251 (799)
+.-++.++.+.|--.|.|..=|.+-+||+-|-.++....+ ++ ..|.-.+...||||-++...+--+.=
T Consensus 457 v~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~----------~~--~id~G~yAllGAAa~LGG~mRMTvSL 524 (762)
T KOG0474|consen 457 VLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGS----------YT--NIDPGLYALLGAAAFLGGVMRMTVSL 524 (762)
T ss_pred HHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHH----------hh--ccCchHHHHHhHHHHhCCeEEEEeee
Confidence 3446777889999999999999999999999998863221 11 23456789999999999999999998
Q ss_pred hhhheeccc
Q 003732 252 VLFALEEVT 260 (799)
Q Consensus 252 vlFalE~~~ 260 (799)
...-+|.+.
T Consensus 525 ~VIl~E~Tn 533 (762)
T KOG0474|consen 525 CVILLELTN 533 (762)
T ss_pred ehHHHHhhh
Confidence 888899984
No 229
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=90.54 E-value=0.5 Score=53.95 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=49.5
Q ss_pred cccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEec-CCCeEEEEEeHHhhhhHhccC
Q 003732 701 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVP-RASRVIGLITRKDLLIEDGED 758 (799)
Q Consensus 701 l~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVvd-~~g~lvGIITr~DLl~~~~~~ 758 (799)
++++|++ ....++.+.+.+++.+.+.+.+..++||.+ +.+.++|+++.||++.+..+.
T Consensus 208 v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 208 VREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred eeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 4445765 457788899999999999999999999999 448999999999999988765
No 230
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.51 E-value=0.34 Score=56.75 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=56.3
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHHhhhhHhccCCcchh
Q 003732 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDGEDSTTVE 763 (799)
Q Consensus 698 ~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVvd~~--g~lvGIITr~DLl~~~~~~~~~~~ 763 (799)
.+.++++|.++..++..+++..|..+.+....+|.+|+||+. --++|.|.|+.|...+.+++..+.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~ 654 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP 654 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence 355667799999999999999999988888779999999864 469999999999998888766543
No 231
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=84.73 E-value=1.7 Score=50.36 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=82.6
Q ss_pred hhcccchhhhccC--CceEEecCcccHH-HHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhcccccCCCCC
Q 003732 580 KMRQMTAKEACGA--QKVVSLPRIIKVA-DVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (799)
Q Consensus 580 ~l~~l~v~diM~~--~kvv~l~~~~tv~-~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~~~~~~~~~~ 656 (799)
.+....++|+|++ + +..+..+.+.. +......+.+|+.+||.+.. ...-+|......+..++....
T Consensus 200 ~l~ek~~~evmtpi~~-~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~---~~~~i~~~L~~~~~~~~~~~~------- 268 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIED-VFALDANTKLDRETVGEIVKHGYSRIPVYEQE---PKNKIGGLLVMNLLRLLQVEV------- 268 (498)
T ss_pred HHHHHHHHHhccchhh-heeeccccccchHHHhhHhhcCcceeeeccCc---ccchhhHHHHhhhhhhhcccc-------
Confidence 3566788999987 4 55555555554 45555668899999999872 223333333233322221100
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 003732 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (799)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVv 736 (799)
.....++...+.+....+++++++.+..+.|++...+ +.|+
T Consensus 269 --------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H-~~~v 309 (498)
T KOG2118|consen 269 --------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSH-MAVV 309 (498)
T ss_pred --------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhce-eEEE
Confidence 0011233444677778899999999999999977765 5555
Q ss_pred cCCCeEEEEEeHHhhhhHhccCCc
Q 003732 737 PRASRVIGLITRKDLLIEDGEDST 760 (799)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~ 760 (799)
.+...-++++|..|+ +...++..
T Consensus 310 ~~~~~~~~~~~l~~~-~~~~~ev~ 332 (498)
T KOG2118|consen 310 RNGHVDIFVLTLEDL-EEVVKEVE 332 (498)
T ss_pred ecCCcceeeEeccch-hhhcceec
Confidence 555778999999998 65554443
No 232
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=82.71 E-value=2.6 Score=47.28 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=44.7
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhc
Q 003732 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (799)
Q Consensus 585 ~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~ 647 (799)
++.+ +.++ ..++++++++.+++....++++ .+||+|+ |+++|+|++.+++..|..
T Consensus 327 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-----~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 327 EVES-LEAA-PTVINPDTLMRDVLAARHRTGG-AILLVEN-----GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred chhh-hccc-CcccCCCCcHHHHHHHHhcCCC-CeEEeeC-----CeEEEEEeHHHHHHHHhc
Confidence 3445 5556 7888999999999998888775 5888876 899999999999887643
No 233
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.58 E-value=2.1 Score=44.65 Aligned_cols=42 Identities=31% Similarity=0.310 Sum_probs=35.3
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHHhhhhH
Q 003732 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (799)
Q Consensus 713 ~~~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIITr~DLl~~ 754 (799)
.......+++..+...+...+||+|++|+++|.||+.+++++
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 334455668888888999999999999999999999999864
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=71.52 E-value=7.5 Score=41.89 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=43.9
Q ss_pred hccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhc
Q 003732 589 ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (799)
Q Consensus 589 iM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~ 647 (799)
.+.++ +.++..++++.+++....+.+ ..+||+|+ +++++|+|++.+++.+|..
T Consensus 332 ~~~~~-~~~v~~d~~~~~~~~~~~~~~-~p~aVvde----~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDD-VLTVDADTPLSEILARIRQAP-CPVAVVDE----DGRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccc-ccccCccchHHHHHHHHhcCC-CceeEEcC----CCcEEEEecHHHHHHHHhc
Confidence 45556 788899999999888877655 46899998 8999999999999988754
No 235
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=70.72 E-value=18 Score=37.29 Aligned_cols=58 Identities=24% Similarity=0.262 Sum_probs=47.2
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHhc
Q 003732 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (799)
Q Consensus 584 l~v~diM~~~kvv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~~ 647 (799)
..++++. +| .+.+++.-++...++-++.++.+--.|||+ -|-+-|+||..|++..+-.
T Consensus 133 F~i~~lL-RP-av~VPESKrvd~lLkeFR~~RnHMAIViDE----fGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 133 FDIKELL-RP-AVVVPESKRVDRLLKEFRSQRNHMAIVIDE----FGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ccHHHhc-cc-ceecccchhHHHHHHHHHhhcCceEEEEec----cCCeeeeEEHHHHHHHHhc
Confidence 3455554 45 788999999999999999888777789998 7899999999999876543
No 236
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=59.56 E-value=17 Score=39.92 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=41.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHHHHh
Q 003732 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (799)
Q Consensus 595 vv~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~lL~ 646 (799)
+..+++.+++.+-+..+++++.+---|||+ .|.+.|+||.+|++.-+-
T Consensus 277 pyFVPe~Tpl~~QL~~F~~~k~hialVVDE----YG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 277 PYFVPEGTPLSDQLVAFQRNKKHIALVVDE----YGDIQGLVTLEDILEEIV 324 (423)
T ss_pred CeecCCCCcHHHHHHHHHHhcceEEEEEec----cCcEEeeeeHHHHHHHHh
Confidence 788999999999888888877666678998 799999999999987554
No 237
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=59.16 E-value=3.7e+02 Score=32.47 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=22.0
Q ss_pred HHhhhhhhhhhhcCccc-hhh-hheeccccchhhhhHHHHHHHHHHHHHHHHHh
Q 003732 234 TCGCAAGVAAAFRAPVG-GVL-FALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (799)
Q Consensus 234 ~~G~aAgvaaaF~APi~-Gvl-FalE~~~~~~~~~~~~~~~~~~~ia~~v~~~~ 285 (799)
..|.+|.+.+.++ |+ +++ |++-.-. |.+.++++++.+...+
T Consensus 526 ~~~~~a~i~g~~g--ITEpaIPfgv~~p~---------~~i~~~~iG~avgG~i 568 (631)
T PRK09765 526 ETGKSTWLLGLAG--ITEGAIPMAIEDPL---------RVIGSFVLGSMVTGAI 568 (631)
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHhccc---------hHHHHHHHHHHHHHHH
Confidence 4566677777765 33 555 6665432 3344555555544433
No 238
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=55.78 E-value=8.6 Score=25.33 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.1
Q ss_pred hhhhHHHHhhhhhhhhhhcCccc
Q 003732 228 DRRDLVTCGCAAGVAAAFRAPVG 250 (799)
Q Consensus 228 ~~r~lv~~G~aAgvaaaF~APi~ 250 (799)
.||+|+..+++++.++++.++.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 48999999999999999988764
No 239
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=53.78 E-value=21 Score=37.47 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=37.9
Q ss_pred hcccchhhhccCCce----EEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCceEEEEEeHHHHHH
Q 003732 581 MRQMTAKEACGAQKV----VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (799)
Q Consensus 581 l~~l~v~diM~~~kv----v~l~~~~tv~~~~~~L~~~~~~~~PVVd~~~~~~~~lvGiItr~dL~~ 643 (799)
+...++.|.|.+. . -.+.....-.+++..+-..+...+||+|+ +|+++|.|++.++..
T Consensus 246 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~----~g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRG-EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE----DGRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhccc-ccccCCccccchhhHHHHHHHHhcCCceeEEECC----CCcEeeEEEHHHHhh
Confidence 3445566665543 1 11222333344555556667788999999 899999999999965
No 240
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=53.78 E-value=5.2e+02 Score=32.01 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccch----------hHHHHHHHHHcCCcchhHHHHHHHHHH
Q 003732 480 IGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT----------VSLCVIMVEITNNLKFLPLIMLVLLIS 549 (799)
Q Consensus 480 iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p----------is~~vi~~E~Tg~~~~l~pi~~~~~~a 549 (799)
+||+.|..+|.++.... ...|...++.|-+++++|.+|-. ++.+++.+=..++..+.. .+.-+++|
T Consensus 197 ~Gaa~Gv~~Gli~~l~~---~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~-~~~e~~ia 272 (764)
T TIGR02865 197 AGAAGGVVIGVILGLAN---NANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSL-ALYEALIA 272 (764)
T ss_pred HhHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHH-HHHHHHHH
Confidence 47778888887765433 33455666677777888887632 222233222223333322 23445555
Q ss_pred HHHHhhhcccHHHHHHH
Q 003732 550 KAVGDAFSEGLYEEQAH 566 (799)
Q Consensus 550 ~~v~~~~~~~iy~~~l~ 566 (799)
..+--.++..+|+..-+
T Consensus 273 ~~lFll~P~~~~~~~~~ 289 (764)
T TIGR02865 273 TLLFLLIPNKIYKKLER 289 (764)
T ss_pred HHHHHHhhHHHHHHHHh
Confidence 55544457778876654
No 241
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=45.84 E-value=4.4e+02 Score=29.38 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhhhcccccccc
Q 003732 169 RTLIGKIFGSIGSVGGGLALGK 190 (799)
Q Consensus 169 ~~l~~K~~~~~~sv~sG~s~G~ 190 (799)
+.++.-+++...+.=-|+|+-|
T Consensus 177 ~~~lG~ilG~m~afDmGGPvNK 198 (359)
T PRK10478 177 IVMLAVIMGLMLAFDMGGPVNK 198 (359)
T ss_pred HHHHHHHHHHHHHhccCCcchH
Confidence 3344555565666656655544
No 242
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=42.97 E-value=40 Score=40.65 Aligned_cols=146 Identities=10% Similarity=0.052 Sum_probs=77.6
Q ss_pred ccHHHHHHHhcC--CCCCCCCchhhhcccchhhhccCCceEEecCccc-HHHHHHHHhhCCCCeeEEeeCCCCCCceEEE
Q 003732 558 EGLYEEQAHLRG--VPLLESRPKYKMRQMTAKEACGAQKVVSLPRIIK-VADVVSILRTNKHNGFPVIDHSRNGERLVIG 634 (799)
Q Consensus 558 ~~iy~~~l~~kg--~p~l~~~~~~~l~~l~v~diM~~~kvv~l~~~~t-v~~~~~~L~~~~~~~~PVVd~~~~~~~~lvG 634 (799)
..|.+.|.+-+. .|.... .+..+......+.+.++ -..+....+ +.++.+.+.+++ ..+.+.|. +|.++.
T Consensus 14 ~~I~~SW~Rc~~~~~p~~~~-~~~~l~~~~~~~~~~~~-~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~----~G~vL~ 86 (638)
T PRK11388 14 PLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRK-KALLTLGQAALEDAWEYMADRE-CALLILDE----TGCILS 86 (638)
T ss_pred hHHHHHHHHHHhcCCCcccC-CCCcCCHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhcCCC-cEEEEEcC----CceEEE
Confidence 445666665543 332211 11223333444555544 233333334 556666676666 68888888 799999
Q ss_pred EEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccccccccCCCCeeecC
Q 003732 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (799)
Q Consensus 635 iItr~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~ 714 (799)
+....++...+.... +.+.. .| .+.. -++. .+ .+. .....|+.|..
T Consensus 87 ~~g~~~~~~~~~~~~-~~~G~----~w-------------~E~~--~GTn--ai-----------g~a-l~~~~pv~v~g 132 (638)
T PRK11388 87 RNGDPQTLQQLSALG-FNDGT----YC-------------AEGI--IGTN--AL-----------SLA-AISGQPVKTMG 132 (638)
T ss_pred EeCCHHHHHHHHHcC-CccCC----cc-------------chhc--cCcC--HH-----------HHH-HhcCCceEEec
Confidence 998888876654422 21111 00 0000 0000 00 000 02455666765
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEe
Q 003732 715 DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747 (799)
Q Consensus 715 ~~sL~~a~~lf~~~glr~lpVvd~~g~lvGIIT 747 (799)
.....+. +........||.|.+|+++|+|+
T Consensus 133 ~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 133 DQHFKQA---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred HHHHHHh---ccCceEEeeEEEcCCCCEEEEEE
Confidence 5554443 34456678999999999999996
No 243
>PRK02509 hypothetical protein; Provisional
Probab=40.45 E-value=3.4e+02 Score=34.13 Aligned_cols=21 Identities=10% Similarity=0.343 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003732 317 EELLPMAVIGVIGGLLGALFN 337 (799)
Q Consensus 317 ~~l~~~~~lGv~~Gl~g~~f~ 337 (799)
..+|...++.+++.+++.+|.
T Consensus 325 a~LP~~~iL~~ia~l~A~~~~ 345 (973)
T PRK02509 325 VQLPVYTILSILAGIIAFWLL 345 (973)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888888887775
No 244
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.29 E-value=45 Score=30.98 Aligned_cols=17 Identities=24% Similarity=0.682 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003732 320 LPMAVIGVIGGLLGALF 336 (799)
Q Consensus 320 ~~~~~lGv~~Gl~g~~f 336 (799)
+..+++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 36788999999998776
No 245
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=29.11 E-value=1.8e+02 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 003732 70 YSVVVKWFFALLIGIG-TGLAAVFINISVE 98 (799)
Q Consensus 70 ~~~~~~w~~~~liGi~-~Gl~a~~~~~~i~ 98 (799)
+..+.+-.....+|++ +|++++++.....
T Consensus 29 ~~Ef~~ia~~~~iG~~i~G~iGf~Ikli~~ 58 (61)
T PRK09400 29 REEFLLVAKVTGLGILLIGLIGFIIYLIMT 58 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888875 6999998887654
No 246
>COG3817 Predicted membrane protein [Function unknown]
Probab=27.42 E-value=1.2e+02 Score=31.78 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=23.0
Q ss_pred CCChHHHHHHHhhhhhhhhccchhHH
Q 003732 500 NIEEGTYALLGAASFLGGSMRMTVSL 525 (799)
Q Consensus 500 ~~~~~~~aliGaaa~l~g~~r~pis~ 525 (799)
+.||...+.+||-|-++|+.-+|+.+
T Consensus 245 ganPaV~~AigM~sGfCGTLlTPMAA 270 (313)
T COG3817 245 GANPAVAGAIGMLSGFCGTLLTPMAA 270 (313)
T ss_pred CCChHHHHHHHHHhhhhhhccChhhh
Confidence 68999999999999999998888764
No 247
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=26.36 E-value=1.2e+02 Score=27.52 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhhhccc
Q 003732 475 VPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRM 521 (799)
Q Consensus 475 ~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~ 521 (799)
+|||..|..+|.++|..-.....+.. .-..+++.|.+++++|++-+
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~~-~~~~~~l~~~s~~L~gvmg~ 73 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDKK-GGSLVALGGTSAALLGVMGQ 73 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCC-cCchhHHHHHHHHHHHHHhh
Confidence 69999999999999877655442111 12245555567777776643
No 248
>COG4129 Predicted membrane protein [Function unknown]
Probab=24.22 E-value=1.6e+02 Score=32.45 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHcCCcch----hHHHHHHHHHHHHHHhhhcccHHHHHHHhc
Q 003732 520 RMTVSLCVIMVEITNNLKF----LPLIMLVLLISKAVGDAFSEGLYEEQAHLR 568 (799)
Q Consensus 520 r~pis~~vi~~E~Tg~~~~----l~pi~~~~~~a~~v~~~~~~~iy~~~l~~k 568 (799)
...+...-++++.+++... +.-+++.+.+|.++.-++.++=|+.....+
T Consensus 107 ~~~~~~~~ii~~~~~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~ 159 (332)
T COG4129 107 PITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVMPPPDYELKLYRA 159 (332)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHH
Confidence 3334444455565554331 445678888999988877322255554443
No 249
>PRK01844 hypothetical protein; Provisional
Probab=23.91 E-value=1.9e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003732 317 EELLPMAVIGVIGGLLGALFN 337 (799)
Q Consensus 317 ~~l~~~~~lGv~~Gl~g~~f~ 337 (799)
+-.+..+++++++|+++.+|.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455667888888888876
No 250
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=22.87 E-value=2.9e+02 Score=33.52 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=16.5
Q ss_pred hhhhHHHHhhhhhhhhhhc
Q 003732 228 DRRDLVTCGCAAGVAAAFR 246 (799)
Q Consensus 228 ~~r~lv~~G~aAgvaaaF~ 246 (799)
..+++++.|++.-+++.|+
T Consensus 361 ~nqELiAlG~~Ni~sSff~ 379 (665)
T KOG0236|consen 361 SNQELIALGISNILSSFFG 379 (665)
T ss_pred CChHHHHHHHHHHhhhhhc
Confidence 3688999999999988888
No 251
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.12 E-value=4.5e+02 Score=22.93 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=29.5
Q ss_pred HHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhh
Q 003732 462 VVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLG 516 (799)
Q Consensus 462 ~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~ 516 (799)
.++-+-.+.-=+|+==..+|+..+..-|..+-+++ .++| .|++|.+|.++
T Consensus 23 ~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~P---dl~p--lAv~GlgsalG 72 (89)
T PF04550_consen 23 VLASNEPITLRLFIGRVILGSAVSVVAGAALIQFP---DLPP--LAVIGLGSALG 72 (89)
T ss_pred HHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCC---CCCH--HHHHHHHHHHH
Confidence 34444444445555555666666666666654433 3444 67888888775
No 252
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=20.73 E-value=64 Score=23.87 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=10.3
Q ss_pred hhhhhhHH--HHhhhhhhhhh
Q 003732 226 DRDRRDLV--TCGCAAGVAAA 244 (799)
Q Consensus 226 ~~~~r~lv--~~G~aAgvaaa 244 (799)
+..||+|+ +.+++++++++
T Consensus 8 ~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 45678876 55555555554
No 253
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=2.2e+02 Score=25.75 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhcCCcccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 003732 272 FFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGAL 335 (799)
Q Consensus 272 ~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~ 335 (799)
+.+-.|+.+++.++++|..+ .+++..| |-++.|+++|.++|++-.+
T Consensus 48 lssefIsGilVGa~iG~llD---~~agTsP---------------wglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLD---KFAGTSP---------------WGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCCCc---------------HHHHHHHHHHHHHHHHHHH
Done!