Query 003732
Match_columns 799
No_of_seqs 348 out of 2702
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 18:37:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003732.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1779-1782//hhsearch_pdb/003732hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 1.0 1 1 742.2 43.7 605 70-759 5-627 (632)
2 3nd0_A SLL0855 protein; CLC fa 1.0 1 1 567.2 40.9 439 45-567 2-443 (466)
3 1ots_A Voltage-gated CLC-type 1.0 1 1 552.3 42.0 415 73-568 33-452 (465)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 1.0 1 1 545.3 44.1 411 75-567 19-436 (446)
5 2d4z_A Chloride channel protei 1.0 1 1 174.6 14.2 180 571-757 1-246 (250)
6 4esy_A CBS domain containing m 1.0 1 1 139.3 10.9 152 580-760 14-165 (170)
7 1jcn_A Inosine monophosphate d 1.0 1 1 135.4 -12.3 180 524-758 47-234 (514)
8 3pc3_A CG1753, isoform A; CBS, 1.0 1 1 133.6 13.0 155 554-760 354-514 (527)
9 3lhh_A CBS domain protein; str 1.0 1 1 132.1 14.2 128 580-761 38-168 (172)
10 1vrd_A Inosine-5'-monophosphat 1.0 1 1 131.5 -5.0 174 525-758 35-216 (494)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=1.00 E-value=1 Score=742.19 Aligned_cols=605 Identities=24% Similarity=0.409 Sum_probs=459.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 66699999-99999999999999999999999977999999876432234699999999999999988765104466789
Q 003732 70 YSVVVKWF-FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGS 148 (799)
Q Consensus 70 ~~~~~~w~-~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~Gs 148 (799)
.|. .||+ +++++|+++|+++++++..++++++++.... ..... ...|+.|+.+++++++++++++++++|.++||
T Consensus 5 ~~~-~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~Gs 80 (632)
T 3org_A 5 MYL-LRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-RLAGR--FAGYILYVVSGVALCLLSTFWCAVLSTEAEGS 80 (632)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBC
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 789-999999999999999999999999999999999999-97425--47899999999999999999999618766789
Q ss_pred CHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCC
Q ss_conf 9799999870655--556236899999997645440256656666028979999999752148643110000002-4689
Q 003732 149 GIPEIKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQ-VFRS 225 (799)
Q Consensus 149 Gipev~~~l~g~~--~~~~l~~~tl~~K~~~~i~sv~sG~s~G~EGP~vhiGa~ig~~l~~~~~~~~~~~~~~~~-~f~~ 225 (799)
||||||++++|.. .++++++|++++|++++++++++|+|+|||||++|+||++|+.+++. ++++ .++|
T Consensus 81 GIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~ 151 (632)
T 3org_A 81 GLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTD 151 (632)
T ss_dssp SHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHS
T ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH---------HHHCCCCCC
T ss_conf 98999999927421245535299999999999999953877666542999999999987420---------121133589
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 11013488773222335550386101223300102100134689999999999999997320103796544689860786
Q 003732 226 DRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIW 305 (799)
Q Consensus 226 ~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~l~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f 305 (799)
+.+||++++||+|||+||+|||||||++|++||++++|+.+.+|+++++|.+++++.+.+... ...+..|+. .|
T Consensus 152 ~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~ 225 (632)
T 3org_A 152 RALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NF 225 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC----CC
T ss_conf 999999999898887899838840869999999888876877878999999999999996267--652011466----55
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 32688888754249999999999999889997446999999998730369840341025789989998730111224799
Q 003732 306 DISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSP 385 (799)
Q Consensus 306 ~v~~~~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~ 385 (799)
++ ..+|+..++ +++++|+++|++|++|+++++ ++.+++.++..+.+|++++++++++++++.+ |..
T Consensus 226 ~~---~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--p~~----- 291 (632)
T 3org_A 226 DA---SDVSRTQTL-LYAILGALMGVLGALFIRCVR---SIYELRMRHYPGTNRYFLVGVVALFASALQY--PFR----- 291 (632)
T ss_dssp ------CCCCSCTH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHSSTTCCTHHHHHHHHHHHHHHTT--TC------
T ss_pred CC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HHH-----
T ss_conf 54---577768999-999999999999999999999---9999999864343489999999999999998--787-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHH
Q ss_conf 999988778878999988776311101599653112454116907999986301465---62137899999999999999
Q 003732 386 CPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI---HEYSAQSLLTFLVMFYTLAV 462 (799)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~---~~~~~~~L~~~~~~k~~~t~ 462 (799)
.| . + ++++.++.+|++.+. +.+.+..|++++++|+++|+
T Consensus 292 ---------------~g-------------~-~---------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~ 333 (632)
T 3org_A 292 ---------------LF-------------A-L---------DPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVA 333 (632)
T ss_dssp -------------------------------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHH
T ss_pred ---------------HC-------------C-C---------CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---------------54-------------8-7---------67999999972786323453038999999999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77247667432106989999997999999998521179873799999765532102220468988999770886206899
Q 003732 463 VTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLI 542 (799)
Q Consensus 463 ~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~~is~~vi~~E~Tg~~~~l~pi 542 (799)
+|+|+|+|||+|+|++++||++|+++|.+++.++|. .++|+.||++||||+++|++|+|.++ +|++|+||++++++|+
T Consensus 334 ~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~-~~~p~~~a~vGmaa~~~~v~~ap~t~-vi~~E~tg~~~~~lpl 411 (632)
T 3org_A 334 LSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGN-AIVPGSYAVVGAAAFTAGVTRALSCA-VIIFEVTGQIRHLVPV 411 (632)
T ss_dssp HHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHSCCTTHH-HHHHHHTCCCSCSHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHH
T ss_conf 998289860100788999999999999999996776-56528999999999999999879999-9999992985679999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHCC--CCCEEEECCCCCHHHHHHHHH-HCCCCEE
Q ss_conf 9999999999852042078999986399887788112310251532205--881688468654899999983-0898826
Q 003732 543 MLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACG--AQKVVSLPRIIKVADVVSILR-TNKHNGF 619 (799)
Q Consensus 543 ~ia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~--~~~v~~l~~~~tv~~i~~~L~-~t~~~~f 619 (799)
|+++++|+++++.+++++||.+++.|++|++++..+...++++|+|+|+ ++ +++++++++++|+.+.|+ +++|+++
T Consensus 412 ~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~-v~~v~~~~t~~e~~~~~~~~~~~~~~ 490 (632)
T 3org_A 412 LISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEG-EPHLFPDSEPQHIKGILEKFPNRLVF 490 (632)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTT-SCCBCSSSCHHHHHHHHHHSTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CEEECCCCCHHHHHHHHHHCCCCCEE
T ss_conf 99999999999984787878999864898522334442025769999605798-55856999499999999735896569
Q ss_pred EEEECCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCC-CCCCCCCCC-
Q ss_conf 886089999866999785899999984245467999988888998764343222--2355788898754-444573222-
Q 003732 620 PVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE--FVKPASSKGLSID-DIHLSSDDM- 695 (799)
Q Consensus 620 PVVd~~~~~~~~l~GiI~r~dL~~lL~~~~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~-di~~~~~~~- 695 (799)
||+|+ +++++|+|+++|+...+.++....+++. +.. +....+.. +.+.......... .......+.
T Consensus 491 PVvd~----~~~lvGiVt~~DL~~~l~~~~~~~~~~~--~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 560 (632)
T 3org_A 491 PVIDA----NGYLLGAISRKEIVDRLQHVLEDVPEPI--AGH----RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRT 560 (632)
T ss_dssp CBBCT----TCBBCCEESHHHHTTTTTTC---------------------------------------------------
T ss_pred EEEEC----CCEEEEEEEHHHHHHHHHHHHHHCCCCC--CCC----CCEECCCHHHHHHHCCCCCCCCCCCCHHHHCCCC
T ss_conf 99905----9969999889999999998755142545--544----5110368999975404578888431012312560
Q ss_pred ----CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHCCCC
Q ss_conf ----2334664555789804259999999999999829988999669991899985776526740687
Q 003732 696 ----EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (799)
Q Consensus 696 ----~~~idL~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~g~vvGIITr~DLl~~~~~~~ 759 (799)
+....++++|+++|.+|++++++.++.++|++++.+++||+ ++|+++||||++|+++.+.++.
T Consensus 561 ~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~~~~ 627 (632)
T 3org_A 561 ATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYSNSL 627 (632)
T ss_dssp ----------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCCC--
T ss_pred EEEECCCCCCCHHHCCCCCEECCCCCHHHHHHHHHHCCCCEEEEE-ECCEEEEEEEHHHHHHHHHHHH
T ss_conf 376136432420105787244688859999999985688779998-8998999975446798873447
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=1.00 E-value=1 Score=567.15 Aligned_cols=439 Identities=21% Similarity=0.357 Sum_probs=353.5
Q ss_pred CCCCCCHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76630001068899998506641046669999999999999999999999999999977999999876432234699999
Q 003732 45 SLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYI 124 (799)
Q Consensus 45 sldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (799)
..|||++ |+.+.++.+++.+....+..+..+++++++|+++|+++.+|+..+++++++++...... ....+..|+.++
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~ 79 (466)
T 3nd0_A 2 AADFETS-NRRWLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL-APIPPLAWLVTA 79 (466)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSCTHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHH
T ss_conf 7517888-87899999999998732429999999999999999999999999999999999987440-224179999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998876510446678997999998706555562368999999976454402566566660289799999997
Q 003732 125 LINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASL 204 (799)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~tl~~K~~~~i~sv~sG~s~G~EGP~vhiGa~ig~~ 204 (799)
.++.+++.++++++++++|.++|||||||++++++.+ +....|+++.|++++++++++|+|+|||||++|+||++|++
T Consensus 80 ~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~ 157 (466)
T 3nd0_A 80 LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQM 157 (466)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999999999777767899899999981888--87528999999999999995587777765699999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 5214864311000000246891101348877322233555038610122330010210013--46899999999999999
Q 003732 205 LGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRS--QLMWRVFFTSAIVAVVV 282 (799)
Q Consensus 205 l~~~~~~~~~~~~~~~~~f~~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~--~l~~~~~~~~~ia~~v~ 282 (799)
++| +++. ++.|+|++++||+|||+||+||||++|++|++||+.++|+. ..+|++++++.++.++.
T Consensus 158 l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~ 224 (466)
T 3nd0_A 158 TGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIIL 224 (466)
T ss_dssp HHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-----------HCCC--CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998-----------8099--866899999999999999994882687899987531435089999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 97320103796544689860786326888887542499999999999998899974469999999987303698403410
Q 003732 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIE 362 (799)
Q Consensus 283 ~~~~~~~~~~~~~~f~~~~~~~f~v~~~~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (799)
+.+ +++.+ .|+++. ...++..++++++++|+++|++|.+|+ +.+.+..+++.+.+ +..++++
T Consensus 225 ~~~-----------~g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~---~~~~~~~~~~~~~~-~~~~~~~ 286 (466)
T 3nd0_A 225 RMI-----------RGQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFN---RGLFKVLDWFDRLP-PLATKWK 286 (466)
T ss_dssp HHH-----------TCSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCC-HHHHHHH
T ss_pred HHH-----------CCCCC--CEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCC-CCCHHHH
T ss_conf 997-----------58887--130577-787899999999999999999999999---99999999998705-4647999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 25789989998730111224799999988778878999988776311101599653112454116907999986301465
Q 003732 363 ACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI 442 (799)
Q Consensus 363 ~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~ 442 (799)
+.+++++++++.++.|.. .| .| | +.++.++++
T Consensus 287 ~~l~g~~~g~l~~~~p~~--------------------~G-----------~G--~------------~~i~~~~~~--- 318 (466)
T 3nd0_A 287 GFLLGSIIGILSLFPLPL--------------------TD-----------GG--D------------NAVLWAFNS--- 318 (466)
T ss_dssp HHHHHHHHHHHTTSSSSC--------------------SS-----------SS--H------------HHHHHHTTS---
T ss_pred HHHHHHHHHHHHHHHHHH--------------------CC-----------CC--H------------HHHHHHHCC---
T ss_conf 999999999999997877--------------------39-----------93--9------------999999848---
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf 62137899999999999999772476674321069899999979999999985211798737999997655321022204
Q 003732 443 HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT 522 (799)
Q Consensus 443 ~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~~ 522 (799)
++++..|+.+++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++.++|...++|+.||++||+|+++|++|+|
T Consensus 319 -~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aP 397 (466)
T 3nd0_A 319 -QSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAP 397 (466)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -9519999999999999999998279987540578999999999999999986776556789999999999999998449
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHH
Q ss_conf 6898899977088620689999999999998520-42078999986
Q 003732 523 VSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHL 567 (799)
Q Consensus 523 is~~vi~~E~Tg~~~~l~pi~ia~~ia~~v~~~~-~~~iy~~~l~~ 567 (799)
+|+++|++|+||++++++|+|+++++|+++++.+ +++|||.++++
T Consensus 398 lt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r 443 (466)
T 3nd0_A 398 LTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER 443 (466)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999787678999999999999999981899849999999
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=1.00 E-value=1 Score=552.30 Aligned_cols=415 Identities=26% Similarity=0.475 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999999999999999999999999999779999998764322346999999999999999887651044667899799
Q 003732 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (799)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (799)
+..|++++++|+++|+++.+++..+++++++++......... ....|+.+..++.+++++++++++++.|.+.||||||
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~ 111 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADN-YPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE 111 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 999999999999999999999999999999999998640234-5618999999999999999999998586446999679
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99987065555623689999999764544025665666602897999999975214864311000000246891101348
Q 003732 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (799)
Q Consensus 153 v~~~l~g~~~~~~l~~~tl~~K~~~~i~sv~sG~s~G~EGP~vhiGa~ig~~l~~~~~~~~~~~~~~~~~f~~~~~~r~l 232 (799)
+++++++.+ +...+|+++.|++++++++++|+|+|||||++|+||++|++++| +++. +++.++|++
T Consensus 112 v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~-----------~~~l-~~~~~~r~l 177 (465)
T 1ots_A 112 IEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTL 177 (465)
T ss_dssp HHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHHH
T ss_pred HHHHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-----------HHCC-CCHHHHHHH
T ss_conf 999982899--88728999999999999995187767755299999999999999-----------8436-988999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
Q ss_conf 87732223355503861012233001021001346--8999999999999999732010379654468986078632688
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQL--MWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (799)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~l--~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~v~~~ 310 (799)
++||+|||+||+||||+||++|++||+.++|+.+. +|++++++.+++++.+.+ ++..+ .|+++.
T Consensus 178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~G~~~--~f~~~~- 243 (465)
T 1ots_A 178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK- 243 (465)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH-----------SCSCC--SSCCCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCC--EEECCC-
T ss_conf 9999999999997884599999999989860468899999999999999999998-----------59986--461477-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC-EEEEEHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8887542499999999999998899974469999999987303-6984-0341025789989998730111224799999
Q 003732 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK-KGNR-VKIIEACVISVITSVISFGLPLLRKCSPCPE 388 (799)
Q Consensus 311 ~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~ 388 (799)
...++..++++++++|+++|++|.+|+ +.+.+..+++.+. +.+. ++++++.+.+++++++.++.|..
T Consensus 244 ~~~~~~~~l~~~illGi~~Gl~g~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~-------- 312 (465)
T 1ots_A 244 LSDAPLNTLWLYLILGIIFGIFGPIFN---KWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT-------- 312 (465)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 777889999999999999999999999---999999999976346871657999999999999999986725--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98877887899998877631110159965311245411690799998630146562137899999999999999772476
Q 003732 389 SDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIA 468 (799)
Q Consensus 389 ~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g 468 (799)
.| .| | +.++.++++ +++...++.+++.|+++|++|+|+|
T Consensus 313 ------------lG-----------~G--~------------~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG 351 (465)
T 1ots_A 313 ------------SG-----------GG--F------------NLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSG 351 (465)
T ss_dssp ------------SS-----------CS--T------------THHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------CC-----------CH--H------------HHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------------28-----------92--9------------999999848----8349999999999999999998489
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67432106989999997999999998521179873799999765532102220468988999770886206899999999
Q 003732 469 VPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLI 548 (799)
Q Consensus 469 ~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~~is~~vi~~E~Tg~~~~l~pi~ia~~i 548 (799)
+|||+|+|++++||++|+++|.+++.++|...++|+.||++||+|+++|++|+|+|+++|++|+||++++++|+|+++++
T Consensus 352 ~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~i 431 (465)
T 1ots_A 352 APGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLG 431 (465)
T ss_dssp CSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 87122078899999999999999999777654567999999999999999878999999999993987799999999999
Q ss_pred HHHHHHHH-CCCHHHHHHHHC
Q ss_conf 99998520-420789999863
Q 003732 549 SKAVGDAF-SEGLYEEQAHLR 568 (799)
Q Consensus 549 a~~v~~~~-~~~iy~~~l~~k 568 (799)
|+++++.+ ++++||.+++++
T Consensus 432 A~~v~~~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 432 ATLLAQFTGGKPLYSAILART 452 (465)
T ss_dssp HHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999967998599999998
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=1.00 E-value=1 Score=545.28 Aligned_cols=411 Identities=26% Similarity=0.464 Sum_probs=335.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 999-9999999999999999999999997799999987643223469999999999999998876510446678997999
Q 003732 75 KWF-FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (799)
Q Consensus 75 ~w~-~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (799)
+|+ +++++|+++|+++.+|+..+++++++++...... ....+..|+.+..++.++++++++++++++|.++||||||+
T Consensus 19 ~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v 97 (446)
T 4ene_A 19 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI 97 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999999999999999999999999999999998751-21205999999999999999999999996764578997899
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH-HH
Q ss_conf 99870655556236899999997645440256656666028979999999752148643110000002468911013-48
Q 003732 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR-DL 232 (799)
Q Consensus 154 ~~~l~g~~~~~~l~~~tl~~K~~~~i~sv~sG~s~G~EGP~vhiGa~ig~~l~~~~~~~~~~~~~~~~~f~~~~~~r-~l 232 (799)
++++++.+ +...+|+++.|++++++++++|+|+|||||++|+||++|++++| +++. +++|+| ++
T Consensus 98 ~~~l~~~~--~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~-----------~~~~--~~~~~r~~l 162 (446)
T 4ene_A 98 EGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL--KGDEARHTL 162 (446)
T ss_dssp HHHHHTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC--CSHHHHHHH
T ss_pred HHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-----------HCCC--CHHHHHHHH
T ss_conf 99980887--65429999999999999995487667753098999999999998-----------8199--979999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
Q ss_conf 877322233555038610122330010210013--468999999999999999732010379654468986078632688
Q 003732 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRS--QLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (799)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~--~l~~~~~~~~~ia~~v~~~~~~~~~~~~~~~f~~~~~~~f~v~~~ 310 (799)
++||+|||+||+||||++|++|++||+.++|+. +.+|++++++.+++++.+.+. ++.+ .|+++.
T Consensus 163 l~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------g~~~--~~~~~~- 228 (446)
T 4ene_A 163 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN-----------HEVA--LIDVGK- 228 (446)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHTT-----------TTCC--SCCCCC-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CCCC--EEECCC-
T ss_conf 99899999999818962578998999874166567799999999999999999974-----------8886--032577-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEE-EEHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8887542499999999999998899974469999999987303-6984034-1025789989998730111224799999
Q 003732 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK-KGNRVKI-IEACVISVITSVISFGLPLLRKCSPCPE 388 (799)
Q Consensus 311 ~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~c~~~~~ 388 (799)
...++..++++++++|+++|++|.+|+ +.+.+..+++.+. +.+..|. ..+.+++++++++.++.|..
T Consensus 229 ~~~~~~~~l~~~illGi~~Gl~g~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~-------- 297 (446)
T 4ene_A 229 LSDAPLNTLWLYLILGIIFGIFGPIFN---KWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT-------- 297 (446)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 776678999999999999999999999---999999999986133412699999999999999999983765--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98877887899998877631110159965311245411690799998630146562137899999999999999772476
Q 003732 389 SDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIA 468 (799)
Q Consensus 389 ~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g 468 (799)
.| .| |+. ++.+++ ++++...|+.+++.|+++|++|+|+|
T Consensus 298 ------------~G-----------~G--~~~------------i~~~~~----~~~~~~~L~~~~~~K~~~t~lt~gsG 336 (446)
T 4ene_A 298 ------------SG-----------GG--FNL------------IPIATA----GNFSMGMLVFIFVARVITTLLCFSSG 336 (446)
T ss_dssp ------------SS-----------CC--STH------------HHHHHT----TCSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------CC-----------CC--HHH------------HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------------28-----------93--999------------999874----88419999999999999999998169
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67432106989999997999999998521179873799999765532102220468988999770886206899999999
Q 003732 469 VPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLI 548 (799)
Q Consensus 469 ~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~~is~~vi~~E~Tg~~~~l~pi~ia~~i 548 (799)
+|||+|+|++++||++|+++|.+++.++|...++|+.||++||+|+++|++|+|+|+++|++|+||++++++|+|+++++
T Consensus 337 ~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~i 416 (446)
T 4ene_A 337 APGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLG 416 (446)
T ss_dssp CSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98632588899999999999999999677655678999999999999999740899999999997886689999999999
Q ss_pred HHHHHHHH-CCCHHHHHHHH
Q ss_conf 99998520-42078999986
Q 003732 549 SKAVGDAF-SEGLYEEQAHL 567 (799)
Q Consensus 549 a~~v~~~~-~~~iy~~~l~~ 567 (799)
|+++++.+ ++++||.++++
T Consensus 417 a~~v~~~~~~~~iY~~~l~r 436 (446)
T 4ene_A 417 ATLLAQFTGGKPLYSAILAR 436 (446)
T ss_dssp HHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 99999984899869999999
No 5
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=1.00 E-value=1 Score=174.65 Aligned_cols=180 Identities=19% Similarity=0.321 Sum_probs=126.2
Q ss_pred CCCCCCCHHHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEHHHHHHHHHCCCC
Q ss_conf 88778811231025153220588168846865489999998308988268860899998669997858999999842454
Q 003732 571 PLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVD 650 (799)
Q Consensus 571 p~l~~~~~~~l~~l~v~diM~~~~v~~l~~~~tv~~i~~~L~~t~~~~fPVVd~~~~~~~~l~GiI~r~dL~~lL~~~~~ 650 (799)
|.|.+... .+.+++|+|+|+++ ++++.+++++.++.++|.++++++|||||+. ++++++|+|+++||+..+....
T Consensus 1 P~L~~~~~-~~~~~~v~diMt~~-vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~--~~~~LvGiIt~~dl~~~l~~~~- 75 (250)
T 2d4z_A 1 PELSWSSA-NKYNIQVGDIMVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTP--DTNTLLGSIDRTEVEGLLQRRI- 75 (250)
T ss_dssp --CCCCCC-CCSSCBTTSSSBSS-CCCEETTCBHHHHHHHHHHCCCSEEEEESCT--TTCBEEEEEEHHHHHHHHHHHH-
T ss_pred CCCCCCCC-CCCCCCHHHHCCCC-CEEECCCCCHHHHHHHHHHCCCCEEEEEECC--CCCEEEEEEEHHHHHHHHHHHH-
T ss_conf 98888886-66898908856789-8588998989999999984498878899669--8876999989999999998744-
Q ss_pred CCCCC---CCC--C------CCC-----CCCCCCCCCCC---------------------------------------CC
Q ss_conf 67999---988--8------889-----98764343222---------------------------------------23
Q 003732 651 FQHSP---LPC--D------TRG-----GSKPISHSFSE---------------------------------------FV 675 (799)
Q Consensus 651 f~~~~---~~~--~------~~~-----~~~~~~~~~~~---------------------------------------~~ 675 (799)
....+ .+. . .+. +..+. ..+.. +.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 154 (250)
T 2d4z_A 76 SAYRRQPAAAAEADEEGRNGETGASFTGEAESS-FAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQ 154 (250)
T ss_dssp HTTSSSCCCCCCBCCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111223343310123465544456445577540-3320232223433357655677555776555666543322222222
Q ss_pred C--CCCCCCCCCCCCCCCCC--------CCCCCCCCCC-CCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEE
Q ss_conf 5--57888987544445732--------2223346645-55789804259999999999999829988999669991899
Q 003732 676 K--PASSKGLSIDDIHLSSD--------DMEMYIDLGP-FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIG 744 (799)
Q Consensus 676 ~--~~~~~~~~i~di~~~~~--------~~~~~idL~~-~m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~g~vvG 744 (799)
. ....+.....+++++.+ .++..+|+++ +|+++|++|.+++|+.+++.+|+++|+||+||+++ |+++|
T Consensus 155 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-GrLVG 233 (250)
T 2d4z_A 155 KKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVG 233 (250)
T ss_dssp ------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCEEEEEEEC-CEEEE
T ss_conf 33333234675212445833566677875176641466411089818789995999999999839908999889-97999
Q ss_pred EEEHHHHHHHHCC
Q ss_conf 9857765267406
Q 003732 745 LITRKDLLIEDGE 757 (799)
Q Consensus 745 IITr~DLl~~~~~ 757 (799)
||||+||+++..+
T Consensus 234 IVTrkDl~kai~~ 246 (250)
T 2d4z_A 234 VVALAEIQAAIEG 246 (250)
T ss_dssp EEEHHHHHHHHHC
T ss_pred EEEHHHHHHHHHH
T ss_conf 9999999999998
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=1.00 E-value=1 Score=139.31 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=112.7
Q ss_pred HHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31025153220588168846865489999998308988268860899998669997858999999842454679999888
Q 003732 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (799)
Q Consensus 580 ~l~~l~v~diM~~~~v~~l~~~~tv~~i~~~L~~t~~~~fPVVd~~~~~~~~l~GiI~r~dL~~lL~~~~~f~~~~~~~~ 659 (799)
.+++++|+|+|+++ ++++++++++.++.+.|.+++++++||+|+ +++++|+|+.+|++....... .....
T Consensus 14 ~l~~~~V~diM~~~-v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~----~g~lvGiit~~Dll~~~~~~~-~~~~~---- 83 (170)
T 4esy_A 14 AIRQVPIRDILTSP-VVTVREDDTLDAVAKTMLEHQIGCAPVVDQ----NGHLVGIITESDFLRGSIPFW-IYEAS---- 83 (170)
T ss_dssp HHHTSBGGGGCCSC-CCCEETTSBHHHHHHHHHHTTCSEEEEECT----TSCEEEEEEGGGGGGGTCCTT-HHHHH----
T ss_pred HHCCCCHHHHCCCC-CCEECCCCCHHHHHHHHHHCCCEEEEEECC----CCCEEEEEEHHHHHHHHHHCC-CCCHH----
T ss_conf 87597979956799-837889193999999999859819999849----933888887999998775124-43113----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88998764343222235578889875444457322223346645557898042599999999999998299889996699
Q 003732 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (799)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idL~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 739 (799)
+... ......+.. ...+......+.++|++++++|.+++++.++.++|.+++.+++||+|+
T Consensus 84 ------~~~~-----------~~~~~~~~~-~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~- 144 (170)
T 4esy_A 84 ------EILS-----------RAIPAPEVE-HLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD- 144 (170)
T ss_dssp ------HHHT-----------TTSCHHHHH-HHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-
T ss_pred ------HHHH-----------HCCCHHHHH-HHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC-
T ss_conf ------4442-----------023146677-653133456512512568646784004999999999839958999999-
Q ss_pred CEEEEEEEHHHHHHHHCCCCC
Q ss_conf 918999857765267406875
Q 003732 740 SRVIGLITRKDLLIEDGEDST 760 (799)
Q Consensus 740 g~vvGIITr~DLl~~~~~~~~ 760 (799)
|+++||||++|+++++.++..
T Consensus 145 g~lvGivt~~Dil~~l~~~~~ 165 (170)
T 4esy_A 145 GVPVGIVTRRDLLKLLLLEES 165 (170)
T ss_dssp TEEEEEEEHHHHTTTSCCC--
T ss_pred CEEEEEEEHHHHHHHHHHCCC
T ss_conf 999999989999999973537
No 7
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=1.00 E-value=1 Score=135.38 Aligned_cols=180 Identities=13% Similarity=0.216 Sum_probs=129.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC--CCHHHH----CCCCHHHHCCCCCEEE
Q ss_conf 8988999770886206899999999999985204207899998639988778--811231----0251532205881688
Q 003732 524 SLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLES--RPKYKM----RQMTAKEACGAQKVVS 597 (799)
Q Consensus 524 s~~vi~~E~Tg~~~~l~pi~ia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~--~~~~~l----~~l~v~diM~~~~v~~ 597 (799)
+.+.+..|+|+++.+.+|+|.+.+-.. -...+.+.....++..+++. .++... +-.+++|+|.++ +++
T Consensus 47 ~~v~l~~eLt~~~~~~iP~vsa~md~~-----t~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~~-~~~ 120 (514)
T 1jcn_A 47 DEVDLTSALTRKITLKTPLISSPMDTV-----TEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFITD-PVV 120 (514)
T ss_dssp GGCBCCEESSSSCEESSCEEECCCTTT-----CSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCSS-CCC
T ss_pred CEEEEEEECCCCEEEECEEEEEEHHHH-----HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCC-CEE
T ss_conf 216997300488057455999712442-----16659999886088249963899999999998632114024059-779
Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46865489999998308988268860899998669997858999999842454679999888889987643432222355
Q 003732 598 LPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKP 677 (799)
Q Consensus 598 l~~~~tv~~i~~~L~~t~~~~fPVVd~~~~~~~~l~GiI~r~dL~~lL~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (799)
+++++++.++.+.|.+++++++||+|+.. .+++++|+|+++|+...... .
T Consensus 121 v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~~lvGiVt~~Dl~~~~~~-~---------------------------- 170 (514)
T 1jcn_A 121 LSPSHTVGDVLEAKMRHGFSGIPITETGT-MGSKLVGIVTSRDIDFLAEK-D---------------------------- 170 (514)
T ss_dssp CCC-----------------CEESCC---------CCEECTTTTC-----------------------------------
T ss_pred ECCCCCHHHHHHHHHHCCCCEEEEEECCC-CCCEEEEEEEHHHHHHHHHC-C----------------------------
T ss_conf 89999999999999865987899994788-68979999999998866432-3----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHH
Q ss_conf 788898754444573222233466455578--980425999999999999982998899966999189998577652674
Q 003732 678 ASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (799)
Q Consensus 678 ~~~~~~~i~di~~~~~~~~~~idL~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~g~vvGIITr~DLl~~~ 755 (799)
...+++++|++ .+.++.+++++.++.++|.+.+.+++||||++++++|+||++|+++..
T Consensus 171 -------------------~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 171 -------------------HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp -----------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred -------------------CCCCHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCEECCCCEEEEEEEHHHHHHHH
T ss_conf -------------------7889899718789876978999999999999975998551787899099999989999876
Q ss_pred CCC
Q ss_conf 068
Q 003732 756 GED 758 (799)
Q Consensus 756 ~~~ 758 (799)
...
T Consensus 232 ~~~ 234 (514)
T 1jcn_A 232 DYP 234 (514)
T ss_dssp CCT
T ss_pred HCC
T ss_conf 286
No 8
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=1.00 E-value=1 Score=133.63 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=123.2
Q ss_pred HHHCCCHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHCCCCCEEEECCC-CCHHHHHHHHHHCCCCEEEEEE-CCCCCCCE
Q ss_conf 520420789999863998877881123102515322058816884686-5489999998308988268860-89999866
Q 003732 554 DAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRI-IKVADVVSILRTNKHNGFPVID-HSRNGERL 631 (799)
Q Consensus 554 ~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~~v~~l~~~-~tv~~i~~~L~~t~~~~fPVVd-~~~~~~~~ 631 (799)
+++....++.++..+++..........+...+|+|+|+++ ++++.++ +++.++.+.|.+++++.+||+| + +++
T Consensus 354 ryls~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~-~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~----~g~ 428 (527)
T 3pc3_A 354 NYMTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPA-PPVILKSDATVGEAIALMKKHRVDQLPVVDQD----DGS 428 (527)
T ss_dssp GGTTTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCC-CSCCEETTCBHHHHHHHHHHHTCSEEEEECTT----TCC
T ss_pred HHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC-CEEECCCCCCHHHHHHHHHHCCCCEEEEEECC----CCE
T ss_conf 6676540588887558865544345654688699937689-86980897819999999998599867799789----997
Q ss_pred EEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99978589999998424546799998888899876434322223557888987544445732222334664555789804
Q 003732 632 VIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYV 711 (799)
Q Consensus 632 l~GiI~r~dL~~lL~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idL~~~m~~~p~t 711 (799)
++|+|+++|++..+.... . .. ...+.++|++++.+
T Consensus 429 lvGiVt~~Dll~~l~~~~-~----------------------------~~----------------~~~V~~im~~~~~~ 463 (527)
T 3pc3_A 429 VLGVVGQETLITQIVSMN-R----------------------------QQ----------------SDPAIKALNKRVIR 463 (527)
T ss_dssp EEEEEEHHHHHHHHHHHC-C----------------------------CT----------------TSBGGGGEETTCCE
T ss_pred EEEEEEHHHHHHHHHHCC-C----------------------------CC----------------CCCHHHHHCCCCEE
T ss_conf 999988999999997056-7----------------------------68----------------88089995189818
Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEEECCC----CEEEEEEEHHHHHHHHCCCCC
Q ss_conf 2599999999999998299889996699----918999857765267406875
Q 003732 712 VPEDMSLSKVYNLFRQLGLRHIFVVPRA----SRVIGLITRKDLLIEDGEDST 760 (799)
Q Consensus 712 V~~~~sL~~a~~lf~~~glr~LpVVd~~----g~vvGIITr~DLl~~~~~~~~ 760 (799)
|.+++++.++.++|.+.+. +||||++ ++++||||++||++++.+...
T Consensus 464 v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~~ 514 (527)
T 3pc3_A 464 LNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGKQ 514 (527)
T ss_dssp EETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCCC
T ss_pred ECCCCCHHHHHHHHHHCCE--EEEEECCCCCCCEEEEEEEHHHHHHHHHHCCC
T ss_conf 8998919999999825888--99991786668828999878999999984452
No 9
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=1.00 E-value=1 Score=132.15 Aligned_cols=128 Identities=19% Similarity=0.270 Sum_probs=110.5
Q ss_pred HHCCCCHHHHCC--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCC-CEEEEEEEHHHHHHHHHCCCCCCCCCC
Q ss_conf 310251532205--88168846865489999998308988268860899998-669997858999999842454679999
Q 003732 580 KMRQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (799)
Q Consensus 580 ~l~~l~v~diM~--~~~v~~l~~~~tv~~i~~~L~~t~~~~fPVVd~~~~~~-~~l~GiI~r~dL~~lL~~~~~f~~~~~ 656 (799)
.+..++|+|+|+ ++ ++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|+...+....
T Consensus 38 ~l~~~~v~diM~~~~~-~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~----~~~~lvGivt~~dl~~~~~~~~------- 105 (172)
T 3lhh_A 38 RLDERTISSLMVPRSD-IVFLDLNLPLDANLRTVMQSPHSRFPVCRN----NVDDMVGIISAKQLLSESIAGE------- 105 (172)
T ss_dssp -----CTTTTSEEGGG-CCCEETTSCHHHHHHHHHTCCCSEEEEESS----STTSEEEEEEHHHHHHHHHTTC-------
T ss_pred CCCCCCHHHHCCCHHH-EEEECCCCCHHHHHHHHHHCCCCEEEEEEC----CCCEEEEEEEHHHHHHHHHHCC-------
T ss_conf 4088799893856889-589718998999999999679987999958----9980999999999998876247-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 88888998764343222235578889875444457322223346645557898042599999999999998299889996
Q 003732 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (799)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idL~~~m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVV 736 (799)
...+.++| ++|+++.+++++.++.++|.+.+.+++||+
T Consensus 106 -----------------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVv 143 (172)
T 3lhh_A 106 -----------------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVV 143 (172)
T ss_dssp -----------------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CCCHHHHH-CCCEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf -----------------------------------------65599985-489375897989999999987298499999
Q ss_pred CCCCEEEEEEEHHHHHHHHCCCCCC
Q ss_conf 6999189998577652674068751
Q 003732 737 PRASRVIGLITRKDLLIEDGEDSTT 761 (799)
Q Consensus 737 d~~g~vvGIITr~DLl~~~~~~~~~ 761 (799)
|++|+++|+||++|++++..++...
T Consensus 144 d~~g~lvGiit~~Dil~~l~~~~~d 168 (172)
T 3lhh_A 144 DEYGDLKGLVTLQDMMDALTGEFFQ 168 (172)
T ss_dssp CTTSCEEEEEEHHHHHHHHHTTCC-
T ss_pred ECCCCEEEEEEHHHHHHHHHCCCCC
T ss_conf 0899989996489999998397756
No 10
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=1.00 E-value=1 Score=131.47 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=126.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC--CHH----HHCCCCHHHHCCCCCEEEE
Q ss_conf 9889997708862068999999999999852042078999986399887788--112----3102515322058816884
Q 003732 525 LCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESR--PKY----KMRQMTAKEACGAQKVVSL 598 (799)
Q Consensus 525 ~~vi~~E~Tg~~~~l~pi~ia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~--~~~----~l~~l~v~diM~~~~v~~l 598 (799)
-+.+..|+|+++.+..|++.+.+. ......+...+.+..++.++... ++. ..+-.+++|+|.++ ++++
T Consensus 35 ~v~~~~eLt~~~~l~iP~is~~m~-----~v~~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~~~~~iM~~~-~~~v 108 (494)
T 1vrd_A 35 DVKIDTRLTRQIRINIPLVSAAMD-----TVTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTENGIIYD-PITV 108 (494)
T ss_dssp GSCCCEESSSSCEESSSEEECCCT-----TTCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTC------------
T ss_pred CEEEEEHHHCCCCCCCEEEECCHH-----HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCC-CEEE
T ss_conf 408876330897668625844527-----8759999999997699449962787188999988651475227168-7388
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68654899999983089882688608999986699978589999998424546799998888899876434322223557
Q 003732 599 PRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPA 678 (799)
Q Consensus 599 ~~~~tv~~i~~~L~~t~~~~fPVVd~~~~~~~~l~GiI~r~dL~~lL~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (799)
++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+... ..
T Consensus 109 ~~~~tv~ea~~~m~~~~~~~~pVvd~----~~~lvGivt~~Dl~~~---~~----------------------------- 152 (494)
T 1vrd_A 109 TPDMTVKEAIDLMAEYKIGGLPVVDE----EGRLVGLLTNRDVRFE---KN----------------------------- 152 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECC----CCEEEEEEEHHHHHHH---CC-----------------------------
T ss_conf 99998999999998769509999858----9979999999998742---47-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHC
Q ss_conf 88898754444573222233466455578--9804259999999999999829988999669991899985776526740
Q 003732 679 SSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (799)
Q Consensus 679 ~~~~~~i~di~~~~~~~~~~idL~~~m~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~g~vvGIITr~DLl~~~~ 756 (799)
. ...++++|++ ++.++.+++++.++.++|.+.+.+++||||++++++|+||++|+++...
T Consensus 153 --~----------------~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 153 --L----------------SKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp --------------------------------------------------------------------------CHHHHT
T ss_pred --C----------------CCCHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHC
T ss_conf --8----------------9838998188999869899897999999999769968989858995999999899885423
Q ss_pred CC
Q ss_conf 68
Q 003732 757 ED 758 (799)
Q Consensus 757 ~~ 758 (799)
..
T Consensus 215 ~~ 216 (494)
T 1vrd_A 215 HP 216 (494)
T ss_dssp CT
T ss_pred CC
T ss_conf 55
Done!