RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003732
(799 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 522 bits (1345), Expect = e-177
Identities = 152/687 (22%), Positives = 281/687 (40%), Gaps = 79/687 (11%)
Query: 72 VVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILV 131
++ F L+G+ L ++++V + ++ FAG+++Y++ + L
Sbjct: 7 LLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLA---GRFAGYILYVVSGVALC 63
Query: 132 FSSVYIITKFAPAAAGSGIPEIKGYLNGV--DIHGILLFRTLIGKIFGSIGSVGGGLALG 189
S + + A GSG+P++K L+G + L R L K G I ++GGGL +G
Sbjct: 64 LLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVG 123
Query: 190 KEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPV 249
EGP VH IA + G + ++ R + CA G+A++F AP+
Sbjct: 124 WEGPNVHIACIIAHQFYRLG--------VFKELCTDRALRLQTLAAACAVGLASSFGAPL 175
Query: 250 GGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISD 309
GGVL+++E + S++ Q W+ ++ A+V F F
Sbjct: 176 GGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT---PLVEAFEGTNFDAS---- 228
Query: 310 GQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVI 369
D S + L A++G + G+LGALF + + R + + V+++
Sbjct: 229 ---DVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHYPGTN---RYFLVGVVALF 282
Query: 370 TSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQ 429
S + + L NDL Q
Sbjct: 283 ASALQYPFRLFALDPR------------------------------ATINDLFKAVPLYQ 312
Query: 430 DDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVG 489
D + L+ ++ + L ++ G+ +PAG FVP +IG+ +GRL G
Sbjct: 313 TD------------HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYG 360
Query: 490 MFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLIS 549
+ + I G+YA++GAA+F G R +S VI+ E+T ++ L +++ +L++
Sbjct: 361 ELMRVVFGN-AIVPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLA 418
Query: 550 KAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQK-VVSLPRIIKVADVV 608
VG+AF+ LYE ++ +P + + + +MTA+E + L + +
Sbjct: 419 VIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIK 478
Query: 609 SILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG--SK 665
IL FPVID + ++G + R ++ LQ ++ P+
Sbjct: 479 GILEKFPNRLVFPVIDANGY----LLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDA 534
Query: 666 PISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLF 725
E + + G ++ +E L + SP VV + +++ LF
Sbjct: 535 ADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLF 594
Query: 726 RQLGLRHIFVVPRASRVIGLITRKDLL 752
L I+V R +++G++ R+D+
Sbjct: 595 VMLMPSMIYVTER-GKLVGIVEREDVA 620
Score = 37.0 bits (86), Expect = 0.022
Identities = 10/64 (15%), Positives = 18/64 (28%)
Query: 314 YSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVI 373
Y + + ++GV L + + R G I V V ++
Sbjct: 6 YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLL 65
Query: 374 SFGL 377
S
Sbjct: 66 STFW 69
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 225 bits (576), Expect = 8e-66
Identities = 113/516 (21%), Positives = 198/516 (38%), Gaps = 78/516 (15%)
Query: 56 YREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS 115
R Q R L + + F A ++G GLAAV + V + +
Sbjct: 16 LRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTAD-N 74
Query: 116 YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKI 175
Y V L + +L +++ K+AP A GSGIPEI+G L + +R L K
Sbjct: 75 YPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR--PVRWWRVLPVKF 132
Query: 176 FGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235
FG +G++GGG+ LG+EGP V G I ++ + + D R L+
Sbjct: 133 FGGLGTLGGGMVLGREGPTVQIGGNIGRMVL-----------DIFR-LKGDEARHTLLAT 180
Query: 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCG 295
G AAG+AAAF AP+ G+LF +EE+ +R L+ + + V++ + M + +
Sbjct: 181 GAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLIS---IKAVFIGVIMSTIMYRIFNHEVA 237
Query: 296 HFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKG 355
G D L ++G+I G+ G +FN+ L M +H
Sbjct: 238 LIDVGKL---------SDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHR-VHGGN 287
Query: 356 NRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKD 415
++ I + ++ F P G
Sbjct: 288 ITKWVLMGGAIGGLCGLLGFVA-----------------------PATSG---------- 314
Query: 416 KEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFV 475
+ I + +S L+ V ++ F P G F
Sbjct: 315 ------------GGFNLIPIATA----GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFA 358
Query: 476 PGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNN 535
P + +G+ G GM V + + ++E GT+A+ G + L S+R ++ ++++E+T+N
Sbjct: 359 PMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDN 418
Query: 536 LKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGV 570
+ + +++ L + + + LY
Sbjct: 419 YQLILPMIITGLGATLLAQFTGGKPLYSAILARTLA 454
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 219 bits (560), Expect = 1e-63
Identities = 99/520 (19%), Positives = 191/520 (36%), Gaps = 92/520 (17%)
Query: 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSV 135
A+++G+ TG+ +V N W+ L + +LV LI+ +V S
Sbjct: 32 LVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPL-AWLVTALISGGMVALSF 90
Query: 136 YIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLV 195
+++ +FAP +GSGIP+I+G+L G ++ R L K+ G S+G G+ G EGP +
Sbjct: 91 WLMKRFAPDTSGSGIPQIEGHLEG--KLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTI 148
Query: 196 HTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFA 255
G I + G W + + ++R L+ G AG+A AF AP+ GV
Sbjct: 149 QMGGSIGQMTG-----------GWFK--ATQENQRILIAVGAGAGLATAFNAPLAGVALI 195
Query: 256 LEEVTSWWRSQ-LMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDY 314
EE+ +RSQ L + ++A ++ + G I +
Sbjct: 196 GEEMHPRFRSQTLAYHSLLFGCVMATIILRMI----------RGQSAII---SLTEFKRV 242
Query: 315 SFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVIS 374
+ L ++G++ G++G FN+ + W + + ++ I ++S
Sbjct: 243 PLDSLWMFIILGILFGVMGYTFNRGLFKVLDW----FDRLPPLATKWKGFLLGSIIGILS 298
Query: 375 FGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIR 434
L G +A+
Sbjct: 299 LFPLPL----------------------TDGGD-----------------------NAVL 313
Query: 435 NLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN 494
F+ + +L+ + L ++ +G G F P + I S +
Sbjct: 314 WAFN----SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHL 369
Query: 495 FYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGD 554
+ E A+ G + + ++R ++ ++ +E+T+N + +++ L++ V +
Sbjct: 370 LFPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAE 429
Query: 555 AF-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQ 593
A + +Y LLE + R G
Sbjct: 430 ALGGKPIYTV--------LLERTLAKQNRGSLVPRGSGGH 461
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 123 bits (311), Expect = 1e-32
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 30/185 (16%)
Query: 573 LESRPKYKMRQMTAKEA-----CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRN 627
+E++ ++ + A + V + V DV +I+ ++GFPV+ +
Sbjct: 1 MEAKEEF-AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES 59
Query: 628 GERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDD 687
RLV G VLR L++ +++ Q + +S +
Sbjct: 60 Q-RLV-GFVLRRDLIISIENARKKQDGVVS---------------------TSIIYFTEH 96
Query: 688 IHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747
+ L L+ SP+ V + + V ++FR+LGLR V R++G+IT
Sbjct: 97 SPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN-GRLLGIIT 155
Query: 748 RKDLL 752
+KD+L
Sbjct: 156 KKDVL 160
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 89.0 bits (219), Expect = 8e-20
Identities = 32/208 (15%), Positives = 75/208 (36%), Gaps = 16/208 (7%)
Query: 563 EQAHLRGVPLLESRPKYKMRQMTAKEACGA---QKVVSLPRIIKVADVVSILRTNKHNGF 619
Q L+ P +++ + + +++ + R A N G
Sbjct: 40 RQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGA 99
Query: 620 PVIDHSRNGERLVI-----GLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674
+ + + G V +Q++ SP+P + + I +
Sbjct: 100 SFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKG 159
Query: 675 VKPASSK---GLSIDDI-HLSSDDMEMYIDLGPF-LNPSPYVVPEDMSLSKVYNLFRQLG 729
+S+ L++++I + + ++ ++ SP+ + E SL K + LF LG
Sbjct: 160 TGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLG 219
Query: 730 LRHIFVVPRASRVIGLITRKDLL--IED 755
L +V +++G++ ++ IE
Sbjct: 220 LDRAYVTSM-GKLVGVVALAEIQAAIEG 246
Score = 44.7 bits (104), Expect = 5e-05
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 2/115 (1%)
Query: 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 654
V S+ D++ +LR K FP +D ++G + R+ + LLQ ++
Sbjct: 23 VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDT--NTLLGSIDRTEVEGLLQRRISAYRR 80
Query: 655 PLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSP 709
+ + + + D + ++ P
Sbjct: 81 QPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDP 135
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 69.3 bits (169), Expect = 7e-14
Identities = 24/182 (13%), Positives = 64/182 (35%), Gaps = 40/182 (21%)
Query: 571 PLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGER 630
P + R + + + +L + + +VV ++ + +P+++ + +
Sbjct: 1 PRILGR-NIGSHHVRVEHFM-NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQI- 57
Query: 631 LVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHL 690
++G+V R+ L+ LQ++ +
Sbjct: 58 -LVGIVQRAQLVQALQAEPPSRAPG----------------------------------- 81
Query: 691 SSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKD 750
++ + G P + + +L + NLF+ L L+ +FV R +G ++ +
Sbjct: 82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT-SRGRAVGCVSWVE 140
Query: 751 LL 752
+
Sbjct: 141 MK 142
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 68.6 bits (168), Expect = 2e-13
Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 30/195 (15%)
Query: 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643
MT ++ + + V D + +L K G PVID ++G+V LL
Sbjct: 10 MTPRQ-----NLHVVKPSTSVDDALELLVEKKVTGLPVID----DNWTLVGVVSDYDLLA 60
Query: 644 LLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGP 703
L Q+ + + + + G + D+ M
Sbjct: 61 LDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKT--YGKVVGDL--------M------ 104
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL---IEDGEDST 760
PSP VV + +L L + R + VV ++IG++TR +++ ++ ++
Sbjct: 105 --TPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162
Query: 761 TVELQSTSVRAQRRD 775
++ +S + D
Sbjct: 163 SISGRSQNDTNLFPD 177
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 60.0 bits (146), Expect = 8e-11
Identities = 16/159 (10%), Positives = 41/159 (25%), Gaps = 35/159 (22%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH 653
K + + ++V + + + + ++G++ +
Sbjct: 25 KPTVVEEDTPIEEIVDRILEDPVTRTVYVA----RDNKLVGMI----------PVMHLLK 70
Query: 654 SPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVP 713
G S + + +I M P V
Sbjct: 71 VSGF-HFFGFIPKEELIRSSMKRLIAKN---ASEI--------M---------LDPVYVH 109
Query: 714 EDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
D L + L ++ + VV ++G + ++L
Sbjct: 110 MDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148
Score = 43.4 bits (103), Expect = 5e-05
Identities = 13/66 (19%), Positives = 28/66 (42%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVELQSTS 768
P VV ED + ++ + + + V R ++++G+I LL G +
Sbjct: 26 PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEEL 85
Query: 769 VRAQRR 774
+R+ +
Sbjct: 86 IRSSMK 91
Score = 29.2 bits (66), Expect = 3.5
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 604 VADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL-VLLQSK 648
+ + + ++ N PV+D + ++G + +L L + +
Sbjct: 114 LEEALKLMIDNNIQEMPVVD----EKGEIVGDLNSLEILLALWKGR 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 4e-09
Identities = 92/537 (17%), Positives = 176/537 (32%), Gaps = 133/537 (24%)
Query: 306 DISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTS-WRRNYLHKKGNRVKIIEAC 364
D G+ Y ++++L + A + ++ L K+ + I
Sbjct: 8 DFETGEHQYQYKDILSV--------FEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMS 57
Query: 365 VISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSK-DKEYND--L 421
+V ++ F LL K E + +E + NY F S E +
Sbjct: 58 KDAVSGTLRLFWT-LLSK----QEEMVQKFVE----EVLRINY-KFLMSPIKTEQRQPSM 107
Query: 422 ATIFFNTQDDAIRN---LFSAKTI---HEYSA--QSLLTFLVMFYTLAVVTFGIAVPAGQ 473
T + Q D + N +F+ + Y Q+LL V+ G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDG------- 157
Query: 474 FVPGIMIGSTYGR--LVGMFVVNFYK-KLNIEEGTYAL-LGAASFLGGSMRMTVSLCVIM 529
++GS G+ + V YK + ++ + L L + + M L
Sbjct: 158 -----VLGS--GKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-- 207
Query: 530 VEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYK-----MRQM 584
+I N ++ QA LR LL+S+P Y+ + +
Sbjct: 208 -QIDPNWTSRSDHS----------SNIKLRIHSIQAELRR--LLKSKP-YENCLLVLLNV 253
Query: 585 TAKEA-------CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVL 637
+A C K++ R +V D +S T H +DH +
Sbjct: 254 QNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATT-TH---ISLDHHSMT-------LT 299
Query: 638 RSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHS-FSEFVK--PASSKGLSIDDIHLSSDD 694
+ LL +D + LP + + P S +E ++ A+ H++ D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWK----HVNCDK 354
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFV----VPRASRVIGLITRKD 750
+ I+ LN + P + +F +L +F +P + ++ LI
Sbjct: 355 LTTIIES--SLN---VLEPAEY-----RKMFDRLS---VFPPSAHIP--TILLSLIWFD- 398
Query: 751 LLIEDGEDSTTVELQSTSVRAQRRDKS--------LLTRNTEAELPLLNGLLVEDHN 799
+I+ +L S+ ++ +S L + L+ +V+ +N
Sbjct: 399 -VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Score = 46.8 bits (110), Expect = 3e-05
Identities = 85/550 (15%), Positives = 132/550 (24%), Gaps = 231/550 (42%)
Query: 275 SAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGA 334
+ + V S +C F W ++ + S E +L M L
Sbjct: 164 TWVALDVCLS-----YKVQC-KMDFKIF--W-LNLKNCN-SPETVLEM---------LQK 204
Query: 335 LFNQLTLYMTS-----------------WRRNYLHKKGNR-----------VKIIEA--- 363
L Q+ TS R L K K A
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 364 -CVISVIT---SVISF----------------------GLPLLRKCSPCPESDLDSGIEC 397
C I + T V F LL K C DL
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------ 318
Query: 398 PR------P-------------PGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFS 438
PR P + N+ K + L TI + ++ L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW------KHVNCDKLTTII----ESSLNVLEP 368
Query: 439 AKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKK 498
A EY MF L+V F
Sbjct: 369 A----EYRK--------MFDRLSV--------------------------------FPPS 384
Query: 499 LNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSE 558
+I L +I ++ K ++++ L
Sbjct: 385 AHIPTIL-------------------LSLIWFDVI---KSDVMVVVNKLHKY-------- 414
Query: 559 GLYEEQA--HLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKH 616
L E+Q +P + K K+ A I+ D +I +T
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHR----------SIV---DHYNIPKTFDS 461
Query: 617 NGF--PVID---------HSRNGERLVIGLVLRSHLLVL--LQSKVDFQHSPLPCDTRGG 663
+ P +D H +N E + R L L+ K+ +H + G
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGS 519
Query: 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYI-DLGPFLNPSPYVVPEDMSLSKVY 722
+ I D E + + FL P E++ SK
Sbjct: 520 ILNTLQQLKFYKP-------YICDND---PKYERLVNAILDFL-PKI---EENLICSKYT 565
Query: 723 NLFRQLGLRH 732
+L ++ L
Sbjct: 566 DLL-RIALMA 574
Score = 29.4 bits (65), Expect = 5.6
Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 75/243 (30%)
Query: 40 SSSVESLD-------YE--------------VIE----NYAYREEQAQRGKLYVGYSVVV 74
SS+ L+ ++ ++ + + KL YS+V
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVE 418
Query: 75 KWFFALLIGI-------------GTGLAAVFIN--ISVENFAGWKFSLTFSIIQKSYFAG 119
K I I L ++ + F + YF
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY---LDQYFYS 475
Query: 120 FLVYILINL-----ILVFSSVYIITKF----------APAAAGSGIPEI------KGYLN 158
+ + L N+ + +F V++ +F A A+GS + + K Y+
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI- 534
Query: 159 GVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYR 218
D + L+ I + + L K L+ IA L + ++
Sbjct: 535 -CDNDPK--YERLVNAILDFLPKIEENLICSKYTDLLR----IA--LMAEDEAIFEEAHK 585
Query: 219 WLQ 221
+Q
Sbjct: 586 QVQ 588
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 53.3 bits (129), Expect = 1e-08
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 42/158 (26%)
Query: 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 654
+ S V DV+ +L + + P+ID + +I + D
Sbjct: 21 MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGY----LINVY----------EAYDV--- 63
Query: 655 PLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714
L G +S S E + S Y +
Sbjct: 64 -LGLIKGGIYNDLSLSVGEALMRRSDDF------------------------EGVYTCTK 98
Query: 715 DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ LS + + R+ + FVV R++G++T D+L
Sbjct: 99 NDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136
Score = 31.0 bits (71), Expect = 0.67
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
DL + + V + Q + + ++ +I + D+L
Sbjct: 12 DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 64
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 51.5 bits (124), Expect = 6e-08
Identities = 19/159 (11%), Positives = 43/159 (27%), Gaps = 42/159 (26%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH 653
+ + V + I ++ + PV+D V+ + SK D
Sbjct: 30 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGR----VVDIY----------SKFDV-- 73
Query: 654 SPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVP 713
+ + S ++ ++ S
Sbjct: 74 --INLAAEKTYNNLDVSVTKALQHRSHY------------------------FEGVLKCY 107
Query: 714 EDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+L + N + + + VV V G+++ D+L
Sbjct: 108 LHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDIL 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 7e-08
Identities = 106/633 (16%), Positives = 172/633 (27%), Gaps = 251/633 (39%)
Query: 126 INLILVFSSVYIITKFAPAAAGSGIPEIK--------GYLNGVDIHGILLFRTLIGKIFG 177
L+ F Y+ + P+ G + YL G DIH
Sbjct: 58 AELVGKFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-------------- 102
Query: 178 SIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGC 237
A A LL + T ++ +
Sbjct: 103 ---------------------ALAAKLLQE-NDTTLVKTKELIKNY-------------- 126
Query: 238 AAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSA------IVAVVVRSAMGWCKS 291
A + A S L F + +VA+
Sbjct: 127 -------ITA----RIMAKRPFDKKSNSAL-----FRAVGEGNAQLVAI----------- 159
Query: 292 GKCGHFGSGGFIIWDISDGQ---EDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRR 348
FG GQ +DY FEEL LY T
Sbjct: 160 -----FG-----------GQGNTDDY-FEEL-------------------RDLYQT---- 179
Query: 349 NYLHKKGNRVKIIEACVISVITSVISF------GLPL---LRKCSPCPESD-LDS-GIEC 397
Y G+ +K + +I + + GL + L S P+ D L S I C
Sbjct: 180 -YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 398 PRPPGMY--GNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLV 455
P G+ +YV K F + +R+ T H +Q L+T +
Sbjct: 239 P-LIGVIQLAHYVVT-A---KLLG------FTPGE--LRSYLKGATGH---SQGLVTAVA 282
Query: 456 M--------FYTLAV----VTFGI------AVPAGQFVPGIMIGSTYGRLVG----MFVV 493
+ F+ V F I A P P I+ S G M +
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSI 341
Query: 494 NFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVG 553
+ + +++ + S L ++ +SL N K LV+ G
Sbjct: 342 SNLTQEQVQD---YVNKTNSHLPAGKQVEISL-------VNGAK-----NLVV-----SG 381
Query: 554 DAFSEGLYEEQAHLRG-----------VPLLESRPKYKMR--QMTA-------KEACGAQ 593
S LY LR +P E + K+ R + + A
Sbjct: 382 PPQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA---- 435
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE--RLVIGLVLRSHLLVLLQSKVDF 651
I K ++ K PV + +G R++ G + + +++ V +
Sbjct: 436 ----SDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 652 QHSPLPCDTRGGSKPISHSFSEFVKPASSKGLS 684
+ + +H +F P + GL
Sbjct: 491 ETTT--------QFKATH-ILDF-GPGGASGLG 513
Score = 45.0 bits (106), Expect = 1e-04
Identities = 48/298 (16%), Positives = 87/298 (29%), Gaps = 120/298 (40%)
Query: 304 IWDISDG--QEDYSFEELL------PMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKG 355
+W+ +D ++ Y F +L P+ + GG G + Y + K
Sbjct: 1645 VWNRADNHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKRIREN--YSAMIFETIVDGKL 1701
Query: 356 NRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKD 415
KI + I+ ++ +F + L
Sbjct: 1702 KTEKIFKE--INEHSTSYTFR---------SEKGLLS----------------------- 1727
Query: 416 KEYNDLATIFFNTQ------DDAIRNLFSAKTI---------H---EYSAQSL------L 451
AT F TQ + A +K + H EY+A L +
Sbjct: 1728 ------ATQF--TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA--LASLADVM 1777
Query: 452 TF-----LV----MFYTLAV-------VTFGI-AVPAGQFVPGI----------MIGSTY 484
+ +V M +AV +G+ A+ G+ +G
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 485 GRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEI-TNNLKFLPL 541
G LV +VN+ N+E Y G +R ++ ++ I + + L
Sbjct: 1838 GWLV--EIVNY----NVENQQYV-------AAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 35.4 bits (81), Expect = 0.082
Identities = 63/433 (14%), Positives = 122/433 (28%), Gaps = 139/433 (32%)
Query: 18 SQIPNS---EEAEHEGVGLLSTSGGSSSVESLDYEVIENYAYREEQAQRGKLYVGYSVVV 74
+ NS L++ GG + + DY + E + LY Y V+V
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTD--DY-------FEELR----DLYQTYHVLV 184
Query: 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQ----------KSYFAGFLVYI 124
+ L + E F+ +I++ K Y +
Sbjct: 185 GDLIKFSAETLSELIRT--TLDAEKV----FTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 125 -LINLI-----LVFSSVY--------------------IITKFAPAAAGSGIPEIKGYLN 158
LI +I +V + + ++T A A S +++
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESF--FVS 295
Query: 159 GVDIHGILLFRTLIG----KIFGSIG--------SVGGGLALGKEGP-LVHTGACIASLL 205
+L F IG + + + S+ G P L + +
Sbjct: 296 VRKAITVLFF---IGVRCYEAYPNTSLPPSILEDSLENNE--GVPSPMLSISNLTQEQVQ 350
Query: 206 GQGGSTKYHL-RYRWLQV--FRSDRDRRDLVTCGCAA---GVAAAFR---APVGG----V 252
T HL + +++ ++LV G G+ R AP G +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNG---AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 253 LFALEEVTSWWR---------SQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFI 303
F+ ++ R S L+ + I +V++ + +
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPA--SDLINKDLVKNNVSFNAK-------DIQIP 458
Query: 304 IWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEA 363
++D DG D + V+ G + + + + W E
Sbjct: 459 VYDTFDG-SD--------LRVLS--GSISERIVDCIIRLPVKW---------------ET 492
Query: 364 CVISVITSVISFG 376
T ++ FG
Sbjct: 493 TTQFKATHILDFG 505
Score = 29.2 bits (65), Expect = 7.4
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 730 LRHIFVVP-----RASR-----VIGLITRKDLLIEDGEDSTTVEL 764
L H+ +VP AS+ L + D E +T EL
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 51.6 bits (124), Expect = 1e-07
Identities = 30/169 (17%), Positives = 44/169 (26%), Gaps = 49/169 (28%)
Query: 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643
M ++ ++ V D V I+ N G V D +GL+
Sbjct: 9 MRVEKIM-NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD----DNGNDVGLL------- 56
Query: 644 LLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGP 703
S+ I KP I + M
Sbjct: 57 ---SERSI---------------IKRFIPRNKKPDEVP---IRLV--------M------ 81
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
V D + V + GL VV RV+G++T DL
Sbjct: 82 --RKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 128
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 52.1 bits (125), Expect = 2e-07
Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 35/172 (20%)
Query: 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSH 640
M K A +K+V++ + + + NK+ PV++ + N + V+G++
Sbjct: 1 MFVRVMKIAQ-NKKIVTVYPTTTIRKALMTMNENKYRRLPVVN-AGNNK--VVGIITSMD 56
Query: 641 LLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYID 700
++ + SK I + H + +
Sbjct: 57 IVDFMGGG-------------------------------SKYNLIREKHERNFLAAINEP 85
Query: 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ + + + E+ + + F + +V +++I LIT +D++
Sbjct: 86 VREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI 137
Score = 50.1 bits (120), Expect = 9e-07
Identities = 21/159 (13%), Positives = 45/159 (28%), Gaps = 39/159 (24%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH 653
V+ ++ DV + N PV+ R ++G++ + D
Sbjct: 157 DVIVATPGERLKDVARTMVRNGFRRLPVVSEGR-----LVGII----------TSTD--- 198
Query: 654 SPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVP 713
+ + + + + + +
Sbjct: 199 ---------------------FIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAK 237
Query: 714 EDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
E L K+ + + + VV R+ G+IT KD+L
Sbjct: 238 EGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276
Score = 45.1 bits (107), Expect = 4e-05
Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 51/177 (28%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH 653
V++L + + + T G P+++ +I L+ ++
Sbjct: 93 NVITLKENADIDEAIETFLTKNVGGAPIVNDENQ----LISLITERDVI----------- 137
Query: 654 SPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVP 713
+ + IDD + D V
Sbjct: 138 -------------------RALLDKIDENEVIDDY--------ITRD--------VIVAT 162
Query: 714 EDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVELQSTSVR 770
L V + G R + VV R++G+IT D + G D +Q+ +VR
Sbjct: 163 PGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVR 218
Score = 40.1 bits (94), Expect = 0.002
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 706 NPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV-PRASRVIGLITRKDLLIEDGEDSTTVEL 764
N V ++ K + R + VV ++V+G+IT D++ G S +
Sbjct: 11 NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70
Query: 765 QS 766
+
Sbjct: 71 RE 72
Score = 28.6 bits (64), Expect = 7.5
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 573 LESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLV 632
+++ ++ + +E + V++ K+ + I+ TN PV+D N +
Sbjct: 212 MQTGNVREITNVRMEEIM-KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE--NLR--I 266
Query: 633 IGLVLRSHLL 642
G++ +L
Sbjct: 267 KGIITEKDVL 276
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 52.5 bits (126), Expect = 2e-07
Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 51/160 (31%)
Query: 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQ 652
V++ ++I+ T PV+D N + +G+V
Sbjct: 101 PNPVTVYNTSDEFTAINIMVTRNFGSLPVVD--INDK--PVGIV---------------- 140
Query: 653 HSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712
+ + L D++ + F++ +
Sbjct: 141 -------------------------------TEREFLLLYKDLDEIFPVKVFMSTKVQTI 169
Query: 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+++ L + L + G R + V+ ++V+G++T + +
Sbjct: 170 YKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAI 209
Score = 51.3 bits (123), Expect = 5e-07
Identities = 26/188 (13%), Positives = 56/188 (29%), Gaps = 44/188 (23%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH 653
L + ++ + V + E++ GL+ LL ++S
Sbjct: 29 NPPILSKEDRLGSAFKKINEGGIGRIIVAN-----EKIE-GLLTTRDLLSTVESYCKDSC 82
Query: 654 SPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVP 713
S + +++ I D + P+P V
Sbjct: 83 SQ----------------GDLYHISTTP---IIDY----------------MTPNPVTVY 107
Query: 714 EDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL--IEDGEDSTTV-ELQSTSVR 770
N+ + VV + +G++T ++ L +D ++ V ST V+
Sbjct: 108 NTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQ 167
Query: 771 AQRRDKSL 778
++ L
Sbjct: 168 TIYKEVRL 175
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 48.8 bits (117), Expect = 5e-07
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 55/180 (30%)
Query: 578 KYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVL 637
++ + K+ + V++ R V + + K + PVID E VIG+V
Sbjct: 2 IDTLKNIKVKDVM-TKNVITAKRHEGVVEAFEKMLKYKISSLPVID----DENKVIGIV- 55
Query: 638 RSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEM 697
+ D I ++ + I D+ M
Sbjct: 56 ---------TTTD----------------IGYNLIRDKYTLETT---IGDV--------M 79
Query: 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGL-----RHIFVVPRASRVIGLITRKDLL 752
+ ED S+ + G + VV + ++++G+I+ D++
Sbjct: 80 --------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131
Score = 39.5 bits (93), Expect = 7e-04
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVE 763
+ + + + + + V+ ++VIG++T D+ D T+E
Sbjct: 18 VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLE 72
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 49.6 bits (118), Expect = 2e-06
Identities = 17/160 (10%), Positives = 42/160 (26%), Gaps = 42/160 (26%)
Query: 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQ 652
+ + V + I ++ + PV+D V+ + + ++ L K
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGR----VVDIYSKFDVINLAAEKT--- 253
Query: 653 HSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712
++ +S+
Sbjct: 254 -------------------------YNNLDVSVTKALQHRSHY----------FEGVLKC 278
Query: 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+L + N + + + VV V G+++ D+L
Sbjct: 279 YLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318
Score = 45.3 bits (107), Expect = 5e-05
Identities = 24/179 (13%), Positives = 47/179 (26%), Gaps = 39/179 (21%)
Query: 574 ESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVI 633
E + +V + + D VS L NK + PVID +
Sbjct: 107 ELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN---TL 163
Query: 634 GLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSD 693
++ + K SK +
Sbjct: 164 YILTHKRI-----LKFLKLFITEFPKPEFMSKSLE------------------------- 193
Query: 694 DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+L + +V + +F Q + + VV RV+ + ++ D++
Sbjct: 194 ------ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI 246
Score = 40.3 bits (94), Expect = 0.002
Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 35/173 (20%)
Query: 581 MRQMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRS 639
M+ + K+V ++V L TN P+ D + ++ +G++ +
Sbjct: 32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD---SKKQSFVGMLTIT 88
Query: 640 HLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYI 699
+ +L + K A + +++ H E+Y+
Sbjct: 89 DFINILH--------------------------RYYKSALVQIYELEE-HKIETWREVYL 121
Query: 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV-PRASRVIGLITRKDL 751
+ + SL + + + + V+ P + + ++T K +
Sbjct: 122 QDSF---KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRI 171
Score = 31.1 bits (70), Expect = 1.2
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 711 VVPEDMSLSKVYNLFRQLGLRHIFVV-PRASRVIGLITRKDLL 752
V + + K + G+R + + +G++T D +
Sbjct: 49 VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 49.2 bits (117), Expect = 3e-06
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 42/160 (26%)
Query: 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQ 652
+ S V DV+ +L + + P+ID + +I + D
Sbjct: 198 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGY----LINVY----------EAYDVL 243
Query: 653 HSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712
S + + Y
Sbjct: 244 GLIKGGIYNDLSLSVGE----------------------------ALMRRSDDFEGVYTC 275
Query: 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
++ LS + + R+ + FVV R++G++T D+L
Sbjct: 276 TKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315
Score = 36.5 bits (84), Expect = 0.029
Identities = 19/206 (9%), Positives = 50/206 (24%), Gaps = 50/206 (24%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH 653
+++ L + V +++L N P+ D + GL+ + + ++Q
Sbjct: 41 RLIVLDTSLLVKKSLNVLLQNSIVSAPLWD---SKTSRFAGLLTTTDFINVIQYYFSNPD 97
Query: 654 SPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDD-------------IH----------- 689
D + V + +
Sbjct: 98 KFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET 157
Query: 690 --------LSSDDMEMYI---------------DLGPFLNPSPYVVPEDMSLSKVYNLFR 726
L+ + ++ DL + + V +
Sbjct: 158 HREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLT 217
Query: 727 QLGLRHIFVVPRASRVIGLITRKDLL 752
Q + + ++ +I + D+L
Sbjct: 218 QGRVSSVPIIDENGYLINVYEAYDVL 243
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 46.3 bits (110), Expect = 3e-06
Identities = 23/149 (15%), Positives = 37/149 (24%), Gaps = 51/149 (34%)
Query: 604 VADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663
AD L + PV+D GER + G+V S LL
Sbjct: 24 TADAARRLAASGCACAPVLD----GERYL-GMVHLSRLL--------------------- 57
Query: 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYN 723
E K + + + L + L
Sbjct: 58 ---------EGRKGWPTVKEKLGEELL----------------ETVRSYRPGEQLFDNLI 92
Query: 724 LFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ + R G+++RK +L
Sbjct: 93 SVAAAKCSVVPLADEDGRYEGVVSRKRIL 121
Score = 36.6 bits (85), Expect = 0.007
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 711 VVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL----IEDGEDSTTVELQS 766
V S + G V+ R +G++ LL E
Sbjct: 17 VFTLGGSTADAARRLAASGCACAPVL-DGERYLGMVHLSRLLEGRKGWPTVKEKLGEELL 75
Query: 767 TSVRAQRRDKSL 778
+VR+ R + L
Sbjct: 76 ETVRSYRPGEQL 87
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 47.4 bits (113), Expect = 5e-06
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 686 DDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGL 745
D IH M + ++ +V E ++ + + RQ V R G+
Sbjct: 4 DKIH--HHHHHMKV--KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGV 59
Query: 746 ITRKDLLIED 755
+ ++DLL D
Sbjct: 60 VNKEDLLDLD 69
Score = 44.3 bits (105), Expect = 5e-05
Identities = 23/179 (12%), Positives = 49/179 (27%), Gaps = 56/179 (31%)
Query: 574 ESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVI 633
+ + M K+ Q + V + + +R + N V D E
Sbjct: 3 SDKIHHHHHHMKVKKWV-TQDFPMVEESATVRECLHRMRQYQTNECIVKD----REGHFR 57
Query: 634 GLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSD 693
G+V + +D+
Sbjct: 58 GVV-----------------------------------------------NKEDLLDLDL 70
Query: 694 DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
D + ++ + V E+ +++ LF + ++ VV R+ G ++ D L
Sbjct: 71 DSS----VFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 125
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 45.7 bits (109), Expect = 5e-06
Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 52/172 (30%)
Query: 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSH 640
M + KE +V+S+ + K+ D+ ++ V+D G + V G++
Sbjct: 1 MEEEIVKEYM-KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GNKPV-GIITERD 54
Query: 641 LLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYID 700
++ + + ++ M
Sbjct: 55 IVKAIGKGKSLE------------------------------TKAEEF--------M--- 73
Query: 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
S + ED ++ L RQ +RH+ VV + G+I+ +D+
Sbjct: 74 -----TASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT 120
Score = 32.6 bits (75), Expect = 0.19
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL--IEDGEDSTT 761
++ V +D L+ + + + + + VV ++ +G+IT +D++ I G+ T
Sbjct: 9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVV-DGNKPVGIITERDIVKAIGKGKSLET 67
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 45.5 bits (108), Expect = 8e-06
Identities = 24/179 (13%), Positives = 58/179 (32%), Gaps = 47/179 (26%)
Query: 575 SRPKYKMRQMTAKEAC-GAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVI 633
S PK + +Q+ K+ ++KV + + + +L + ++ PV+D +
Sbjct: 6 SIPKDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYK----LH 61
Query: 634 GLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSD 693
GL+ + +L + + L + + ++ +
Sbjct: 62 GLISTAMILDGILGLERIEFERL------------------------EEMKVEQV----- 92
Query: 694 DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ V+ + S +K + I V G++TR+ +L
Sbjct: 93 -----------MKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAIL 138
Score = 43.9 bits (104), Expect = 2e-05
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 704 FLNPSPYV--VPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL--IEDGEDS 759
+ S V V L + + G I V+ ++ GLI+ +L I E
Sbjct: 20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERI 79
Query: 760 TTVELQSTSVR 770
L+ V
Sbjct: 80 EFERLEEMKVE 90
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 45.4 bits (108), Expect = 1e-05
Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 55/190 (28%)
Query: 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRS 639
K++++ K+ V + + V D + + V+D LV G++ R
Sbjct: 13 KLKKLQVKDF--QSIPVVIHENVSVYDAICTMFLEDVGTLFVVD---RDAVLV-GVLSRK 66
Query: 640 HLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYI 699
LL + + P + I M
Sbjct: 67 DLLRASIGQQELTSVP-----------------------------VHII------MTR-- 89
Query: 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV---PRASRVIGLITRKDL---LI 753
P+ V + + + + + + V+ + VIG +T+ ++ L+
Sbjct: 90 ------MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV 143
Query: 754 EDGEDSTTVE 763
E+ ++
Sbjct: 144 SLSENEILLQ 153
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 44.6 bits (106), Expect = 2e-05
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 48/178 (26%)
Query: 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 654
+L R + D ++ P++D + ++G+V + LL
Sbjct: 15 PHTLLRTHTLNDAKHLMEALDIRHVPIVD----ANKKLLGIVSQRDLL------------ 58
Query: 655 PLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714
+ S + + ++ M + V
Sbjct: 59 ------AAQESSLQRSAQGDSLAFETP---LFEV--------M--------HTDVTSVAP 93
Query: 715 DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL------IEDGEDSTTVELQS 766
L + ++ + + VV ++G+IT D + +E E+S EL
Sbjct: 94 QAGLKESAIYMQKHKIGCLPVV-AKDVLVGIITDSDFVTIAINLLELQEESEPDELDE 150
Score = 42.7 bits (101), Expect = 1e-04
Identities = 11/67 (16%), Positives = 28/67 (41%)
Query: 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVELQS 766
P+ + +L+ +L L +RH+ +V +++G+++++DLL
Sbjct: 13 RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 72
Query: 767 TSVRAQR 773
+
Sbjct: 73 SLAFETP 79
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 44.7 bits (106), Expect = 2e-05
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 55/171 (32%)
Query: 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643
+ + KV + + + +L ++ PV+D S + GL+ + ++
Sbjct: 17 LIPAD-----KVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYK----LHGLISMTMMMD 67
Query: 644 LLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGP 703
+ + L + + ++++ M
Sbjct: 68 AILGLERIEFERL------------------------ETMKVEEV------M-------- 89
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIF--VVPRASRVIGLITRKDLL 752
N + + D SL K L + H F V G+ TR+++L
Sbjct: 90 --NRNIPRLRLDDSLMKAVGLI----VNHPFVCVENDDGYFAGIFTRREVL 134
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 704 FLNPSPYV--VPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL--IEDGEDS 759
FL P+ V V L + + G I V+ + ++ GLI+ ++ I E
Sbjct: 16 FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERI 75
Query: 760 TTVELQSTSVR 770
L++ V
Sbjct: 76 EFERLETMKVE 86
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 44.4 bits (105), Expect = 2e-05
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 688 IHLSSDDMEMYIDLGPFLNPSPYV--VPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGL 745
I L SD + + +G F+ + V V +L + + G I V+ + R+ GL
Sbjct: 4 ISLQSDQL-LEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGL 62
Query: 746 ITRKDLL--IEDGEDSTTVELQSTSVR 770
I ++ I E +L +V
Sbjct: 63 IGTNMIMNSIFGLERIEFEKLDQITVE 89
Score = 43.2 bits (102), Expect = 5e-05
Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 51/183 (27%)
Query: 573 LESRPKYKMRQMTAKEAC-GAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERL 631
L S ++ + T + A KV + + + +L + PV+D RL
Sbjct: 3 LISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD---PSYRL 59
Query: 632 VIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLS 691
GL+ + ++ + + L ++++++
Sbjct: 60 H-GLIGTNMIMNSIFGLERIEFEKL------------------------DQITVEEV--- 91
Query: 692 SDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIF--VVPRASRVIGLITRK 749
M + + + K + + + + F V G+ TR+
Sbjct: 92 ---M----------LTDIPRLHINDPIMKGFGMV----INNGFVCVENDEQVFEGIFTRR 134
Query: 750 DLL 752
+L
Sbjct: 135 VVL 137
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 42.5 bits (101), Expect = 5e-05
Identities = 17/169 (10%), Positives = 42/169 (24%), Gaps = 52/169 (30%)
Query: 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643
M ++ V ++ + DV+ N V+ +G+V +L
Sbjct: 1 MRVEDVM-VTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-----RVGIVTTWDVLE 54
Query: 644 LLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGP 703
+ D + ++ M
Sbjct: 55 AIAEGDDLAEVK-----------------------------VWEV--------M------ 71
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ ++ + + + + V +IG+I+ D+L
Sbjct: 72 --ERDLVTISPRATIKEAAEKMVKNVVWRLLVE-EDDEIIGVISATDIL 117
Score = 36.3 bits (85), Expect = 0.007
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL--IEDGEDSTTV 762
+ SL V + + VV + +G++T D+L I +G+D V
Sbjct: 11 VDTIDITASLEDVLRNYVENAKGSSVVV-KEGVRVGIVTTWDVLEAIAEGDDLAEV 65
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 42.6 bits (101), Expect = 6e-05
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
SP V + + R+ +RH+ VV + ++G+++ +DL
Sbjct: 79 SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123
Score = 31.5 bits (72), Expect = 0.42
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR--ASRVIGLITRKDLL--IEDGEDS 759
L P +PE ++ +V + + + R R + +++ +D+L + D
Sbjct: 10 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL 69
Query: 760 TTV 762
Sbjct: 70 DGP 72
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 41.7 bits (99), Expect = 1e-04
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVE 763
P ++S+ + + + + H+ +V +++G+IT D+ ++ T+E
Sbjct: 11 PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIE 65
Score = 37.9 bits (89), Expect = 0.002
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
ED + V + + + VV RV+G++T +D+
Sbjct: 72 VITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115
Score = 31.3 bits (72), Expect = 0.33
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLV 636
++ I + + IL + N P++D +LV G++
Sbjct: 10 PPITAHSNISIMEAAKILIKHNINHLPIVD---EHGKLV-GII 48
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 41.8 bits (99), Expect = 1e-04
Identities = 22/174 (12%), Positives = 52/174 (29%), Gaps = 54/174 (31%)
Query: 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSH 640
TA++ V + + +R + P+ + +RL G++
Sbjct: 5 FTMTTARDIM-NAGVTCVGEHETLTAAAQYMREHDIGALPICG---DDDRLH-GML---- 55
Query: 641 LLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE--FVKPASSKGLSIDDIHLSSDDMEMY 698
++ V + GL + +
Sbjct: 56 -------------------------------TDRDIVIKGLAAGLDPNTATAG-ELA--- 80
Query: 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
S Y V + S+ ++ N+ + +R + V+ R++G++T D+
Sbjct: 81 -------RDSIYYVDANASIQEMLNVMEEHQVRRVPVI-SEHRLVGIVTEADIA 126
Score = 38.7 bits (91), Expect = 0.001
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL---IEDGEDST 760
+N V E +L+ R+ + + + R+ G++T +D++ + G D
Sbjct: 13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPN 72
Query: 761 TV 762
T
Sbjct: 73 TA 74
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 42.0 bits (99), Expect = 2e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 704 FLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTT 761
FL P+ V+ + + L Q+ + VV + +G I +D++ E +
Sbjct: 20 FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLS 79
Query: 762 VE-LQSTSVR 770
E + T +
Sbjct: 80 QEIMADTDIV 89
Score = 40.4 bits (95), Expect = 4e-04
Identities = 21/171 (12%), Positives = 43/171 (25%), Gaps = 56/171 (32%)
Query: 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643
+T + + L +L + PV+ + +G +
Sbjct: 21 LTPAK-----NLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQ----FVGTI------- 64
Query: 644 LLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGP 703
D +++ + I +
Sbjct: 65 ---GLRDI---------------MAYQMEHDLSQEIMADTDIVHM--------T------ 92
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIF--VVPRASRVIGLITRKDLL 752
VV D ++++V + + F VV G+ITRK +L
Sbjct: 93 --KTDVAVVSPDFTITEVLHKL----VDESFLPVVDAEGIFQGIITRKSIL 137
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 40.7 bits (96), Expect = 3e-04
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL---IEDGEDSTTVE 763
+ + L +V + ++HI + +++G+ T DLL E + + E
Sbjct: 80 RNLITANVNTPLGEVLRKMAEHRIKHILIE-EEGKIVGIFTLSDLLEASRRRLETAISAE 138
Score = 38.7 bits (91), Expect = 0.001
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL-- 752
M+M + ++ V S+ + L + + + V+ V+G T+ D++
Sbjct: 3 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 62
Query: 753 -IEDGEDSTT 761
I G
Sbjct: 63 VIVPGLPYDI 72
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 41.7 bits (98), Expect = 5e-04
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759
P + + + LF++ +R VV + +++G+I+ K +L+ E+
Sbjct: 11 PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQ 61
Score = 41.3 bits (97), Expect = 6e-04
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
VV E+ +L K L + R + VV + +G++T D++
Sbjct: 68 RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113
Score = 33.6 bits (77), Expect = 0.23
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
V M++ +V + + + V+ +IGLI DLL
Sbjct: 231 VIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274
Score = 32.1 bits (73), Expect = 0.61
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLV 636
V+ + V +V + PVI GE +IGL+
Sbjct: 231 VIVATPHMTVHEVALKMAKYSIEQLPVIR----GEGDLIGLI 268
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 39.6 bits (93), Expect = 0.001
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 51/169 (30%)
Query: 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643
+ AK G + + ++ + V D + ++ V+D + G+V
Sbjct: 13 LKAKPDSG-RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-----IAGIV------- 59
Query: 644 LLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGP 703
+ ++ + + S + + M
Sbjct: 60 --------------------------TERDYARKVVLQERSSKATRVE-EIM-------- 84
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
V S + L + +RH+ V+ ++IGLI+ DL+
Sbjct: 85 --TAKVRYVEPSQSTDECMALMTEHRMRHLPVL-DGGKLIGLISIGDLV 130
Score = 28.4 bits (64), Expect = 5.1
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 703 PFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL---LIEDGED- 758
P + Y V ++ + L + G+ + VV + G++T +D ++
Sbjct: 17 PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVV-DGDDIAGIVTERDYARKVVLQERSS 75
Query: 759 -STTVE 763
+T VE
Sbjct: 76 KATRVE 81
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 39.1 bits (91), Expect = 0.004
Identities = 18/160 (11%), Positives = 49/160 (30%), Gaps = 42/160 (26%)
Query: 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQ 652
+ + KV DV+ +L + P+++ ++ + ++ L+Q D+
Sbjct: 193 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGT----LLNVYESVDVMHLIQDG-DYS 247
Query: 653 HSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712
+ L E + + +
Sbjct: 248 NLDLSV-------------GEALLKRPANF------------------------DGVHTC 270
Query: 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
L +++ + + +FVV ++ G+++ D+L
Sbjct: 271 RATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 37.3 bits (87), Expect = 0.007
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ + + ++ + RH+ V R+ G+I+ D++
Sbjct: 101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVE-ENGRLAGIISIGDVV 145
Score = 33.1 bits (76), Expect = 0.15
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 690 LSSDDMEMYI-DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITR 748
L M ++ DL V D+S+ + + + V V+G+ T
Sbjct: 17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTE 76
Query: 749 KDL---LIEDGED--STTVE 763
+DL + G +V
Sbjct: 77 RDLVKAVAGQGAASLQQSVS 96
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 35.3 bits (82), Expect = 0.020
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
V + + L ++ +RH+ V+ +VIGL++ DL+
Sbjct: 82 RQVAYVDLNNTNEDCMALITEMRVRHLPVL-DDGKVIGLLSIGDLV 126
Score = 28.7 bits (65), Expect = 3.1
Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 706 NPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL---LIEDGEDSTTV 762
+ + D S+ + + V+ + +++G++T +D +
Sbjct: 16 GHTVVAIGPDDSVFNAMQKMAADNIGALLVM-KDEKLVGILTERDFSRKSYLLDKPVKDT 74
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 36.4 bits (83), Expect = 0.023
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
V D + V + + V+ ++V+G I R L+
Sbjct: 196 LVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239
Score = 36.4 bits (83), Expect = 0.026
Identities = 8/50 (16%), Positives = 23/50 (46%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758
+ ++SL +N+ R L+ I V + ++G+++ ++ +
Sbjct: 17 IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI 66
Score = 34.9 bits (79), Expect = 0.066
Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 17/192 (8%)
Query: 462 VVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRM 521
+ T I ++ + L + + NI E G + +M+
Sbjct: 54 LSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPG--KVVVAAMQA 111
Query: 522 TVSLCVI---MVEITNNLKFLPLIMLVLLIS--KAVGDAFSEGLYEEQAHLRGVPLLESR 576
I + I + + ++ L +S G E A + ++ +
Sbjct: 112 ESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTP 171
Query: 577 PKYKMRQMTAKEACGAQKVVSLPRIIK------VADVVSILRTNKHNGFPVIDHSRNGER 630
++ V++ ++ V DV + +++ +PVID N +
Sbjct: 172 HDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE--NNK- 228
Query: 631 LVIGLVLRSHLL 642
V+G + R HL+
Sbjct: 229 -VVGSIARFHLI 239
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 34.4 bits (80), Expect = 0.090
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 711 VVPEDMSLSKVYNLFRQLGLRH---IFVVPRASRVIGLITRKDLLIEDGEDSTTVELQST 767
V+ + ++++ FR++ L +F+V A + +G + R D+ + + L S
Sbjct: 66 VLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE-PHEPLISLLSE 124
Query: 768 SVRA 771
RA
Sbjct: 125 DSRA 128
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 34.9 bits (80), Expect = 0.11
Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 24/141 (17%)
Query: 223 FRSDRDRRDLVTCGCAAGVAAAFRA-------PVGGVLFALEEVTS-WWR-------SQL 267
R GC AG A VL E+T+ +R +
Sbjct: 146 LDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTCFRGPSETHLDSM 205
Query: 268 MWRVFFTSAIVAVVVRSAMG-WCKSGKCGHFGSGGFII--------WDISDGQEDYSFEE 318
+ + AV+V + + + I+ + + + +
Sbjct: 206 IGQAILGDGAAAVIVGADPDLTVERPIFELVSTAQTIVPESHGAIEGHLLESGLSFHLYK 265
Query: 319 LLPMAVIGVIGGLLGALFNQL 339
+P + I L F L
Sbjct: 266 TVPTLISNNIKTCLSDAFTPL 286
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 34.6 bits (80), Expect = 0.12
Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 48/180 (26%)
Query: 574 ESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVI 633
+ + + E V L V + +++++ ++ + PV+D +G V+
Sbjct: 374 VNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD-DGS--VL 430
Query: 634 GLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPIS-HSFSEFVKPASSKGLSIDDIHLSS 692
G+V + L+ + S R S P ++ S+ L
Sbjct: 431 GVVGQETLITQIVS-----------MNRQQSDPAIKALNKRVIRLNESEILG-------- 471
Query: 693 DDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
L L P V+ + + + L T+ D+
Sbjct: 472 -------KLARVLEVDPSVLILGKNPAG------------------KVELKALATKLDVT 506
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 33.2 bits (75), Expect = 0.37
Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 40/180 (22%)
Query: 223 FRSDRDRRDLVTCGCAAGVAA-----------AFRAPVGGVLFALEEVTSWW-------- 263
++ L GC+ G+AA R +L EV++
Sbjct: 158 LSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELESI 217
Query: 264 ---RSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHF----------GSGGFIIWDISDG 310
+ + F+ AV++ + +G + S + +D+
Sbjct: 218 DALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDVDPM 277
Query: 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNY------LHKKGNRVKIIEAC 364
+P+ + L + L + S + +H G I+
Sbjct: 278 GWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMH-PGGA-TILSGA 335
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 31.7 bits (73), Expect = 0.47
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHI-FVVPRASRVIGLITRKDLL----- 752
++L + VP +S ++ FR G + FVV + GL+T +D++
Sbjct: 107 LELVDLVKN-CNFVPNSLSGMELLEHFRTTGS-QMVFVVDEYGDLKGLVTLQDMMDALTG 164
Query: 753 -IEDGEDS 759
+ S
Sbjct: 165 EFFQEDGS 172
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 31.9 bits (72), Expect = 0.85
Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 24/143 (16%)
Query: 223 FRSDRDRRDLVTCGCAAGVAAAFRA-------PVGGVLFALEEVTSWW--------RSQL 267
R + GC AG A VL E T+ L
Sbjct: 173 LHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSL 232
Query: 268 MWRVFFTSAIVAVVVRSAMGW--------CKSGKCGHF-GSGGFIIWDISDGQEDYSFEE 318
+ + F A++V + S G I + + + +
Sbjct: 233 VGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKG 292
Query: 319 LLPMAVIGVIGGLLGALFNQLTL 341
+P + I + F+Q +
Sbjct: 293 AVPDLISANIENCMVEAFSQFKI 315
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 31.9 bits (72), Expect = 0.90
Identities = 17/143 (11%), Positives = 37/143 (25%), Gaps = 24/143 (16%)
Query: 223 FRSDRDRRDLVTCGCAAGVAAAFRA-------PVGGVLFALEEVTS-WWR-------SQL 267
++ ++ + G AG A VL E+T R
Sbjct: 163 LHANVNKYCIYMQGAYAGGTVMRYAKDLAENNRGARVLVVCAELTIMMLRAPNETHLDNA 222
Query: 268 MWRVFFTSAIVAVVVRSAMGWCKSGKCGHF---------GSGGFIIWDISDGQEDYSFEE 318
+ F A+++ S + I + + + +
Sbjct: 223 IGISLFGDGAAALIIGSDPIIGVEKPMFEIVCTKQTVIPNTEDVIHLHLRETGMMFYLSK 282
Query: 319 LLPMAVIGVIGGLLGALFNQLTL 341
PM + + L +F + +
Sbjct: 283 GSPMTISNNVEACLIDVFKSVGI 305
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 31.8 bits (72), Expect = 1.0
Identities = 28/163 (17%), Positives = 47/163 (28%), Gaps = 24/163 (14%)
Query: 223 FRSDRDRRDLVTCGCAAGVAAAFRA-------PVGGVLFALEEVTS-WWR------SQLM 268
R D C AG + A P VL + E S ++ L+
Sbjct: 185 LRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTYQPADDTLESLI 244
Query: 269 WRVFFTSAIVAVVVRSAMGWCKSGKCGHF------GSGGFIIWDISDGQEDYSFEELLPM 322
R+ F VA VV + G+ + + + P
Sbjct: 245 VRLLFADTAVAAVVTGRPRPESVLRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPR 304
Query: 323 AVIGVIGGLLGALFNQLTLYMTSWRRNY--LHKKGNRVKIIEA 363
AV + + L + +SW + H G +++E
Sbjct: 305 AVQETVTAMWEWLRVRYEDDPSSWHPDVLLAH-PGGT-RVLEY 345
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 31.3 bits (71), Expect = 1.1
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 23/140 (16%)
Query: 223 FRSDRDRRDLVTCGCAAGVAAAFRA-------PVGGVLFALEEVTSWW--------RSQL 267
R R L GC AG AA A VL E+T + L
Sbjct: 144 LRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYFTGPDEGCFRTL 203
Query: 268 MWRVFFTSAIVAVVVRSAMGWCKSGK-------CGHFG-SGGFIIWDISDGQEDYSFEEL 319
+ + F AV+V + + S + ++ + D
Sbjct: 204 LVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTIIPESDHALNMRFTERRLDGVLGRQ 263
Query: 320 LPMAVIGVIGGLLGALFNQL 339
+P + + L +F L
Sbjct: 264 VPGLIGDNVERCLLDMFGPL 283
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 30.4 bits (68), Expect = 2.2
Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 40/180 (22%)
Query: 223 FRSDRDRRDLVTCGCAAGVAA-----------AFRAPVGGVLFALEEVTSWW-------- 263
++ L G + G+AA R +L EV++
Sbjct: 129 LSDRLEKVLLHGIGASGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELESI 188
Query: 264 ---RSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHF----------GSGGFIIWDISDG 310
+ + F+ AV++ + +G + S + +D+
Sbjct: 189 DALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDVDPM 248
Query: 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNY------LHKKGNRVKIIEAC 364
+P+ + L + L + S + +H G I+
Sbjct: 249 GWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMH-PGGA-TILSGA 306
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 30.3 bits (69), Expect = 2.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 710 YV-VPEDMSLSKVYNLFRQLGLR-----HIFVVPRASRVIGLITRKDLLIEDGEDSTTVE 763
YV V E M++ +V R+ +I+VV R+ G+++ +DL++ D T V
Sbjct: 145 YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD--PRTRVA 202
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 30.6 bits (70), Expect = 2.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 603 KVADVVSILRTNKHNGFPVIDHSRNGERLV 632
ADV++I + HN V D L+
Sbjct: 115 TFADVLAISQRTTHNTVAVTDDGTPHGVLL 144
Score = 28.7 bits (65), Expect = 9.9
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 711 VVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKD 750
+D LS+ + + L + ++ + ++ RKD
Sbjct: 175 TAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKD 214
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 30.0 bits (68), Expect = 3.4
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 33/165 (20%)
Query: 223 FRSDRDRRDLVTCGCAAGVAAAFRA-------PVGGVLFALEEVTSWW-------RSQLM 268
F S + + GCAAG AA RA P L E S L+
Sbjct: 132 FDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLL 191
Query: 269 WRVFFTSAIVAVVVRS------AMGWCKSGKCGHF--GSGGFIIWDISDGQEDYSFEELL 320
F I A VVR + S + + +I++D+ + ++ +
Sbjct: 192 CNGLFGDGIAAAVVRGRGGTGVRLERNGS----YLIPKTEDWIMYDVKATGFHFLLDKRV 247
Query: 321 PMAVIGVIGGLLGALFNQLTLYMTSWRRNYL--HKKGNRVKIIEA 363
P + + L L + + ++ H G +I++
Sbjct: 248 PATM-EPLAPALKELAGE--HGWDASDLDFYIVH-AGGP-RILDD 287
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 29.5 bits (67), Expect = 3.6
Identities = 10/60 (16%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 710 YV-VPEDMSLSKVYNLFRQLGLR-----HIFVVPRASRVIGLITRKDLLIEDGEDSTTVE 763
+V + + ++ + + +++VV + + ++G+I+ +DL++ D D T +
Sbjct: 147 FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND--DDTLIA 204
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1
c.62.1.3 PDB: 1jeq_A* 3rzx_B
Length = 609
Score = 29.9 bits (66), Expect = 4.2
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 662 GGSK-PISHSFSEFVKPASSKGLSIDD-IHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLS 719
G + + +E +K GL + L Y+ PS +V PE+ +
Sbjct: 323 GSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLR------PSLFVYPEESLVI 376
Query: 720 KVYNLFRQL 728
LF L
Sbjct: 377 GSSTLFSAL 385
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Length = 173
Score = 29.0 bits (66), Expect = 4.3
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHI-FVVPRASRVIGLITRKDLL------IEDGED 758
P +V E + + ++ + ++ + V + GL+T D+ D ++
Sbjct: 109 PIIVHESIGILRLMDTLKRSRG-QLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDE 164
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 29.4 bits (67), Expect = 5.1
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 596 VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLV 636
V L V DV+ + +G P+ + G +LV G+V
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLV-GIV 158
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL
HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Length = 337
Score = 29.3 bits (66), Expect = 5.6
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 237 CAAGVAAAFRAPVGGVLFALEEVTSWWRSQ--LMWRVFFTSAIVAVVVRSAMGWC 289
A G+ A + S+ + L V+F S ++ +VV ++ +
Sbjct: 6 AALGLWGLSLAQEAHRVAITHPGGSFNQEVAFLFPWVYFFSFLIFLVVAGSLAYV 60
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 28.3 bits (63), Expect = 5.9
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 119 GFLVYILINLILVFSS-VYIITKFAPAAAGSGIPEIK----------GYLNGVDIHGILL 167
G +L+ ++L S + + AP A P GY G D++ +
Sbjct: 9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGY--G-DLYPV-- 63
Query: 168 FRTLIGKIFGSIGSVGG 184
TL G++ + V G
Sbjct: 64 --TLWGRLVAVVVMVAG 78
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 29.1 bits (66), Expect = 6.2
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 11/41 (26%)
Query: 438 SAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGI 478
SAK I E + + LL F A Q
Sbjct: 2 SAKAISEQTGKELLY-----------KFICTTSAIQNRFKY 31
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for
infectious disease, hydrolase; 1.70A {Coccidioides
immitis}
Length = 158
Score = 28.3 bits (63), Expect = 6.2
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 277 IVAVVVRSAMGWCKSGKCGH-------FGSGGFIIWDISDGQEDYSFEELLPMA 323
+ +V + G CG G I +G + + EELLP
Sbjct: 95 LTHIVAIANEGRGILSPCGRCRQVLADLHPGIKAIVIGKEGPKMVAVEELLPSI 148
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 29.3 bits (65), Expect = 6.4
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 18/77 (23%)
Query: 119 GFLVYILINLILVFSS-VYIITKFAPAAAGSGIPEI----------KGYLNGVDIHGILL 167
G L++ L +++FSS VY + IP+ GY G D+
Sbjct: 344 GLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGY--G-DMVPT-- 398
Query: 168 FRTLIGKIFGSIGSVGG 184
T+ GKI GS+ ++ G
Sbjct: 399 --TIGGKIVGSLCAIAG 413
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 28.3 bits (63), Expect = 7.0
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 119 GFLVYILINLILVFSS-VYIITKFAPAAAGSGIPEIK----------GYLNGVDIHGILL 167
G +L+ ++L S + + AP A P GY G D++ +
Sbjct: 36 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGY--G-DLYPV-- 90
Query: 168 FRTLIGKIFGSIGSVGGGLALG 189
TL G++ + V G + G
Sbjct: 91 --TLWGRLVAVVVMVAGITSFG 110
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 29.1 bits (66), Expect = 7.0
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 712 VPEDMSLSKVYNLFRQLGLR-----HIFVVPRASRVIGLITRKDLLIEDGEDSTTVE 763
V E M++ +V R+ +I+VV R+ G+++ +DL++ D T V
Sbjct: 168 VREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD--PRTRVA 222
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase;
family 16 carbohydrate binding module-2; 1.90A
{Thermoanaerobacterium polysaccharolytiorganism_taxid}
Length = 144
Score = 28.1 bits (62), Expect = 7.3
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 2 LSNHLQN-GFETAKLVWSQ----IPNSEEAEHEGVGLLSTSGGSSSVESLDYEVIENYAY 56
+SN + N E W + EA + G SGG + + N Y
Sbjct: 1 VSNLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTY 60
Query: 57 R 57
Sbjct: 61 I 61
>3mxa_A SCV3V2(G19S); protein-DNA complex, hydrolase-DNA complex; HET: DNA
1PE; 2.30A {Chlamydomonas reinhardtii} PDB: 3mx9_A*
Length = 362
Score = 28.7 bits (63), Expect = 8.2
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 56 YREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINI--SVENFAGWKFSLTFSIIQ 113
Y + ++ + G K F L G ++ I N + SLTF++ Q
Sbjct: 179 YNQALSKYNQALSGGGGSNKEFLLYLAGFVDSDGSIIAQIKPRQSNKFKHQLSLTFAVTQ 238
Query: 114 KSYFAGFLVYI 124
K+ FL +
Sbjct: 239 KTQRRWFLDKL 249
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS,
chalcone-S synthase superfamily, type I PKS; HET: P6G;
2.90A {Dictyostelium discoideum}
Length = 374
Score = 28.6 bits (64), Expect = 8.7
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 223 FRSDRDRRDLVTCGCAAGVAAAFRA-------PVGGVLFALEEVTSWW------RSQLMW 269
D +R L GC AG+++ A P +L EV S Q++
Sbjct: 143 LNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGGDQMVA 202
Query: 270 RVFFTSAIVAVVV-------RSAMGWCKSGKCGHF-GSGGFIIWDISDGQEDYSFEELLP 321
F A ++ + + F + ++WD+ + + +P
Sbjct: 203 SSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIP 262
Query: 322 MAVIGVIGGLLGALFNQLTLYM 343
+ + I + L ++ L
Sbjct: 263 IVIGSGIEAFVDTLLDKAKLQT 284
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 28.4 bits (64), Expect = 10.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 260 TSWWRSQLMWRVFF 273
T W +L+WR +F
Sbjct: 319 TYWVLFELIWRDYF 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.417
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,392,120
Number of extensions: 786428
Number of successful extensions: 1844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1790
Number of HSP's successfully gapped: 161
Length of query: 799
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 698
Effective length of database: 3,881,772
Effective search space: 2709476856
Effective search space used: 2709476856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)