Query 003736
Match_columns 799
No_of_seqs 357 out of 2311
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 6E-104 1E-108 919.0 46.3 621 20-714 2-655 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 1.6E-56 3.4E-61 484.5 23.4 287 206-492 1-289 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 1E-43 2.2E-48 370.1 23.0 211 22-234 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 1.5E-29 3.3E-34 275.3 27.9 257 21-282 280-579 (980)
5 smart00302 GED Dynamin GTPase 99.9 6.1E-27 1.3E-31 209.1 12.2 91 622-712 2-92 (92)
6 PF02212 GED: Dynamin GTPase e 99.9 7.8E-23 1.7E-27 183.0 11.8 92 621-712 1-92 (92)
7 PF00350 Dynamin_N: Dynamin fa 99.8 1.5E-19 3.2E-24 178.8 13.4 148 50-197 1-168 (168)
8 COG0699 Predicted GTPases (dyn 99.5 8.7E-12 1.9E-16 146.0 29.0 509 97-707 2-542 (546)
9 PRK09866 hypothetical protein; 99.4 9.8E-11 2.1E-15 134.6 27.2 61 27-91 53-113 (741)
10 COG0218 Predicted GTPase [Gene 99.4 5E-12 1.1E-16 126.7 13.9 102 45-204 22-152 (200)
11 COG0486 ThdF Predicted GTPase 99.3 4E-11 8.6E-16 133.3 19.6 128 21-203 190-340 (454)
12 COG1160 Predicted GTPases [Gen 99.3 1.5E-11 3.2E-16 136.3 15.3 176 23-281 151-356 (444)
13 COG1159 Era GTPase [General fu 99.3 2.8E-11 6.1E-16 127.7 13.7 102 49-204 8-131 (298)
14 COG1160 Predicted GTPases [Gen 99.2 1.1E-10 2.4E-15 129.5 13.8 100 48-201 4-126 (444)
15 PF02421 FeoB_N: Ferrous iron 99.2 2.7E-11 5.9E-16 118.7 7.1 97 49-202 2-120 (156)
16 TIGR03156 GTP_HflX GTP-binding 99.2 4.2E-10 9E-15 125.0 15.0 125 24-201 162-315 (351)
17 TIGR00436 era GTP-binding prot 99.2 7.5E-10 1.6E-14 118.8 16.5 25 49-73 2-26 (270)
18 COG2262 HflX GTPases [General 99.1 9.3E-10 2E-14 120.5 15.3 147 43-279 188-359 (411)
19 PRK00089 era GTPase Era; Revie 99.1 1.6E-09 3.5E-14 117.4 16.7 98 49-201 7-127 (292)
20 PF05049 IIGP: Interferon-indu 99.1 1.7E-09 3.8E-14 119.3 16.8 197 24-298 16-245 (376)
21 PRK11058 GTPase HflX; Provisio 99.1 2.3E-09 4.9E-14 121.9 16.1 104 45-201 195-323 (426)
22 PRK00093 GTP-binding protein D 99.0 4.6E-09 9.9E-14 120.3 18.0 148 46-278 172-346 (435)
23 PRK00454 engB GTP-binding prot 99.0 4.5E-09 9.8E-14 106.3 15.0 30 45-74 22-51 (196)
24 cd01895 EngA2 EngA2 subfamily. 99.0 3.5E-09 7.5E-14 103.8 13.7 102 47-202 2-128 (174)
25 PRK03003 GTP-binding protein D 99.0 5.4E-09 1.2E-13 120.9 16.8 147 46-277 210-383 (472)
26 COG1084 Predicted GTPase [Gene 99.0 8.6E-09 1.9E-13 110.0 16.7 121 28-203 150-296 (346)
27 TIGR03594 GTPase_EngA ribosome 99.0 6E-09 1.3E-13 119.0 16.9 122 24-200 147-296 (429)
28 PF01926 MMR_HSR1: 50S ribosom 99.0 2.3E-09 5.1E-14 99.6 10.2 36 49-84 1-37 (116)
29 cd04104 p47_IIGP_like p47 (47- 99.0 7.8E-09 1.7E-13 105.6 14.9 104 48-202 2-122 (197)
30 cd01897 NOG NOG1 is a nucleola 99.0 8.9E-09 1.9E-13 101.3 14.8 25 48-72 1-25 (168)
31 cd01878 HflX HflX subfamily. 99.0 5.5E-09 1.2E-13 106.8 13.8 105 45-202 39-168 (204)
32 PRK12298 obgE GTPase CgtA; Rev 99.0 7.6E-09 1.6E-13 116.3 15.7 38 47-85 159-197 (390)
33 cd04163 Era Era subfamily. Er 99.0 6.9E-09 1.5E-13 100.5 13.5 26 47-72 3-28 (168)
34 PRK09518 bifunctional cytidyla 99.0 1.2E-08 2.5E-13 123.7 18.4 147 46-277 449-622 (712)
35 COG3596 Predicted GTPase [Gene 98.9 6.4E-09 1.4E-13 108.6 11.6 164 46-281 37-227 (296)
36 PRK12299 obgE GTPase CgtA; Rev 98.9 2.1E-08 4.6E-13 110.6 16.1 26 46-71 157-182 (335)
37 cd01876 YihA_EngB The YihA (En 98.9 1.5E-08 3.2E-13 98.5 13.2 29 49-77 1-29 (170)
38 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 1E-08 2.2E-13 104.5 12.5 28 49-76 2-29 (196)
39 PRK05291 trmE tRNA modificatio 98.9 7.5E-08 1.6E-12 110.6 20.7 50 23-72 190-240 (449)
40 TIGR00450 mnmE_trmE_thdF tRNA 98.9 9.3E-08 2E-12 109.4 20.5 52 21-72 177-228 (442)
41 TIGR03598 GTPase_YsxC ribosome 98.9 1.1E-08 2.4E-13 102.7 11.4 101 44-202 15-144 (179)
42 cd01898 Obg Obg subfamily. Th 98.9 2.3E-08 4.9E-13 98.5 13.5 24 49-72 2-25 (170)
43 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 1.6E-08 3.6E-13 99.2 12.0 26 48-73 1-26 (168)
44 PRK15494 era GTPase Era; Provi 98.8 3.3E-08 7.1E-13 109.6 14.1 25 48-72 53-77 (339)
45 PRK12296 obgE GTPase CgtA; Rev 98.8 3.8E-08 8.3E-13 113.0 15.0 26 46-71 158-183 (500)
46 cd00880 Era_like Era (E. coli 98.8 4.4E-08 9.6E-13 93.5 13.2 55 147-202 44-119 (163)
47 KOG1423 Ras-like GTPase ERA [C 98.8 3E-08 6.5E-13 104.4 12.0 101 49-205 74-203 (379)
48 PRK12297 obgE GTPase CgtA; Rev 98.8 6.6E-08 1.4E-12 109.6 15.7 25 47-71 158-182 (424)
49 TIGR02729 Obg_CgtA Obg family 98.8 5.1E-08 1.1E-12 107.4 14.4 26 46-71 156-181 (329)
50 COG0370 FeoB Fe2+ transport sy 98.8 2.8E-08 6.1E-13 115.2 11.5 163 48-298 4-186 (653)
51 TIGR03594 GTPase_EngA ribosome 98.8 3.9E-08 8.6E-13 112.3 12.7 99 49-202 1-122 (429)
52 cd04164 trmE TrmE (MnmE, ThdF, 98.8 9.7E-08 2.1E-12 92.1 13.5 24 49-72 3-26 (157)
53 KOG0448 Mitofusin 1 GTPase, in 98.8 1.1E-07 2.4E-12 109.2 15.9 149 48-208 110-282 (749)
54 PRK03003 GTP-binding protein D 98.8 8E-08 1.7E-12 111.2 15.2 102 45-201 36-160 (472)
55 PF10662 PduV-EutP: Ethanolami 98.8 3.2E-08 6.9E-13 95.3 9.5 25 48-72 2-26 (143)
56 KOG1191 Mitochondrial GTPase [ 98.8 2.7E-07 5.9E-12 102.9 17.9 103 48-204 269-406 (531)
57 cd00881 GTP_translation_factor 98.7 5.1E-08 1.1E-12 97.3 10.9 53 148-201 62-128 (189)
58 PRK09554 feoB ferrous iron tra 98.7 1E-07 2.2E-12 115.5 15.4 25 48-72 4-28 (772)
59 PF04548 AIG1: AIG1 family; I 98.7 4.8E-08 1E-12 101.1 10.6 36 49-84 2-39 (212)
60 cd01894 EngA1 EngA1 subfamily. 98.7 6.8E-08 1.5E-12 93.3 11.0 21 51-71 1-21 (157)
61 PRK04213 GTP-binding protein; 98.7 1.3E-07 2.9E-12 96.3 13.7 28 45-72 7-34 (201)
62 cd01853 Toc34_like Toc34-like 98.7 8E-08 1.7E-12 101.8 11.2 41 44-84 28-69 (249)
63 PRK09518 bifunctional cytidyla 98.7 1.2E-07 2.7E-12 114.9 14.1 101 46-201 274-397 (712)
64 cd04171 SelB SelB subfamily. 98.7 1E-07 2.3E-12 92.8 10.7 23 49-71 2-24 (164)
65 PRK00093 GTP-binding protein D 98.7 2.1E-07 4.6E-12 106.6 14.5 26 47-72 1-26 (435)
66 cd01879 FeoB Ferrous iron tran 98.6 2.5E-07 5.4E-12 89.7 11.5 21 52-72 1-21 (158)
67 cd01881 Obg_like The Obg-like 98.6 1.8E-07 4E-12 92.3 10.1 21 52-72 1-21 (176)
68 cd04142 RRP22 RRP22 subfamily. 98.6 5.4E-07 1.2E-11 92.3 13.7 24 49-72 2-25 (198)
69 PF00009 GTP_EFTU: Elongation 98.6 8.5E-08 1.8E-12 97.1 7.5 55 145-200 67-135 (188)
70 cd04165 GTPBP1_like GTPBP1-lik 98.6 2.7E-07 5.9E-12 96.3 11.5 55 147-202 83-153 (224)
71 TIGR00991 3a0901s02IAP34 GTP-b 98.6 3.7E-07 8.1E-12 98.6 12.5 29 44-72 35-63 (313)
72 cd01890 LepA LepA subfamily. 98.6 4.7E-07 1E-11 90.1 12.4 52 149-201 68-133 (179)
73 cd01861 Rab6 Rab6 subfamily. 98.6 5.5E-07 1.2E-11 87.8 11.7 26 49-74 2-27 (161)
74 cd01868 Rab11_like Rab11-like. 98.5 2.8E-07 6.1E-12 90.4 9.4 26 48-73 4-29 (165)
75 PRK15467 ethanolamine utilizat 98.5 7E-07 1.5E-11 88.0 11.4 23 49-71 3-25 (158)
76 cd01850 CDC_Septin CDC/Septin. 98.5 5.2E-07 1.1E-11 97.2 10.8 28 49-76 6-33 (276)
77 cd04147 Ras_dva Ras-dva subfam 98.5 1.9E-06 4.1E-11 87.9 14.5 24 49-72 1-24 (198)
78 cd01864 Rab19 Rab19 subfamily. 98.5 8.2E-07 1.8E-11 87.3 11.3 25 48-72 4-28 (165)
79 cd00154 Rab Rab family. Rab G 98.5 2.6E-07 5.6E-12 88.7 7.6 25 48-72 1-25 (159)
80 cd04136 Rap_like Rap-like subf 98.5 1.6E-06 3.6E-11 84.5 13.3 25 48-72 2-26 (163)
81 cd01893 Miro1 Miro1 subfamily. 98.5 1.9E-06 4E-11 85.1 13.7 24 49-72 2-25 (166)
82 cd04159 Arl10_like Arl10-like 98.5 7.1E-07 1.5E-11 85.8 10.0 24 49-72 1-24 (159)
83 cd01862 Rab7 Rab7 subfamily. 98.5 1.2E-06 2.7E-11 86.2 11.8 24 49-72 2-25 (172)
84 cd01889 SelB_euk SelB subfamil 98.5 1.7E-06 3.7E-11 87.7 13.1 52 148-202 68-135 (192)
85 cd01866 Rab2 Rab2 subfamily. 98.5 8.6E-07 1.9E-11 87.7 10.4 28 48-75 5-32 (168)
86 smart00173 RAS Ras subfamily o 98.5 2.8E-06 6.1E-11 83.1 13.8 24 49-72 2-25 (164)
87 TIGR00231 small_GTP small GTP- 98.4 2.2E-06 4.7E-11 81.7 12.4 29 48-77 2-30 (161)
88 cd04112 Rab26 Rab26 subfamily. 98.4 2.2E-06 4.8E-11 86.8 13.1 24 49-72 2-25 (191)
89 cd01891 TypA_BipA TypA (tyrosi 98.4 1.3E-06 2.8E-11 88.8 11.2 54 148-202 65-132 (194)
90 cd01865 Rab3 Rab3 subfamily. 98.4 1.4E-06 3.1E-11 85.8 11.1 25 48-72 2-26 (165)
91 cd01896 DRG The developmentall 98.4 2.7E-06 5.8E-11 89.5 13.6 23 49-71 2-24 (233)
92 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.4 2.8E-06 6E-11 83.5 12.6 25 48-72 3-27 (166)
93 smart00175 RAB Rab subfamily o 98.4 1.9E-06 4E-11 84.1 11.1 24 49-72 2-25 (164)
94 cd04175 Rap1 Rap1 subgroup. T 98.4 3.6E-06 7.9E-11 82.5 13.2 25 48-72 2-26 (164)
95 cd01867 Rab8_Rab10_Rab13_like 98.4 1.1E-06 2.4E-11 86.8 9.5 25 48-72 4-28 (167)
96 cd04139 RalA_RalB RalA/RalB su 98.4 3.7E-06 8E-11 81.8 12.9 24 49-72 2-25 (164)
97 cd01863 Rab18 Rab18 subfamily. 98.4 3.8E-06 8.3E-11 81.9 12.9 24 49-72 2-25 (161)
98 cd04119 RJL RJL (RabJ-Like) su 98.4 2.2E-06 4.8E-11 83.6 11.1 24 49-72 2-25 (168)
99 TIGR02528 EutP ethanolamine ut 98.4 2.2E-06 4.8E-11 82.0 10.8 24 49-72 2-25 (142)
100 cd04113 Rab4 Rab4 subfamily. 98.4 1.3E-06 2.8E-11 85.4 9.1 26 49-74 2-27 (161)
101 cd04118 Rab24 Rab24 subfamily. 98.4 4.2E-06 9.1E-11 84.6 13.1 24 49-72 2-25 (193)
102 cd04114 Rab30 Rab30 subfamily. 98.4 3.8E-06 8.3E-11 82.6 12.5 27 46-72 6-32 (169)
103 cd04177 RSR1 RSR1 subgroup. R 98.4 6.6E-06 1.4E-10 81.3 14.0 24 49-72 3-26 (168)
104 cd04145 M_R_Ras_like M-Ras/R-R 98.4 2.4E-06 5.2E-11 83.4 10.7 24 49-72 4-27 (164)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.4 6.4E-06 1.4E-10 82.9 14.0 24 49-72 5-28 (183)
106 cd01886 EF-G Elongation factor 98.4 1.3E-06 2.7E-11 93.9 9.2 53 148-201 64-130 (270)
107 cd00878 Arf_Arl Arf (ADP-ribos 98.4 2.8E-06 6E-11 82.7 10.8 23 49-71 1-23 (158)
108 TIGR00491 aIF-2 translation in 98.3 2.1E-06 4.6E-11 101.3 11.6 120 45-201 2-135 (590)
109 cd04144 Ras2 Ras2 subfamily. 98.3 4.5E-06 9.7E-11 84.5 12.4 24 49-72 1-24 (190)
110 cd04124 RabL2 RabL2 subfamily. 98.3 4.4E-06 9.5E-11 82.1 11.8 25 49-73 2-26 (161)
111 cd04138 H_N_K_Ras_like H-Ras/N 98.3 9E-06 1.9E-10 78.8 13.7 25 48-72 2-26 (162)
112 cd01860 Rab5_related Rab5-rela 98.3 1.5E-06 3.2E-11 84.9 8.2 26 49-74 3-28 (163)
113 cd04157 Arl6 Arl6 subfamily. 98.3 1.9E-06 4E-11 84.0 8.9 23 49-71 1-23 (162)
114 cd04127 Rab27A Rab27a subfamil 98.3 4.2E-06 9.1E-11 83.4 11.6 25 48-72 5-29 (180)
115 cd04106 Rab23_lke Rab23-like s 98.3 1.7E-06 3.6E-11 84.4 8.5 24 49-72 2-25 (162)
116 cd04166 CysN_ATPS CysN_ATPS su 98.3 1E-06 2.2E-11 90.8 7.2 68 132-202 62-145 (208)
117 TIGR00993 3a0901s04IAP86 chlor 98.3 2.7E-06 5.9E-11 99.0 11.2 35 49-83 120-155 (763)
118 cd04170 EF-G_bact Elongation f 98.3 1.1E-06 2.5E-11 94.1 7.6 54 148-202 64-131 (268)
119 cd04156 ARLTS1 ARLTS1 subfamil 98.3 7.2E-06 1.6E-10 79.9 12.5 24 49-72 1-24 (160)
120 cd04168 TetM_like Tet(M)-like 98.3 2.8E-06 6.1E-11 89.5 10.2 52 149-201 65-130 (237)
121 cd04140 ARHI_like ARHI subfami 98.3 2.7E-06 5.9E-11 83.7 9.6 25 48-72 2-26 (165)
122 cd00157 Rho Rho (Ras homology) 98.3 5.3E-06 1.1E-10 81.6 11.5 24 49-72 2-25 (171)
123 PTZ00369 Ras-like protein; Pro 98.3 1.1E-05 2.4E-10 81.6 14.2 26 47-72 5-30 (189)
124 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.5E-06 5.5E-11 83.8 9.0 51 24-77 82-132 (157)
125 cd04176 Rap2 Rap2 subgroup. T 98.3 8.5E-06 1.8E-10 79.7 12.4 24 49-72 3-26 (163)
126 TIGR00475 selB selenocysteine- 98.3 4.6E-06 1E-10 98.8 12.4 52 148-202 50-118 (581)
127 cd04123 Rab21 Rab21 subfamily. 98.3 3.8E-06 8.1E-11 81.5 9.8 25 49-73 2-26 (162)
128 cd04146 RERG_RasL11_like RERG/ 98.3 7.8E-06 1.7E-10 80.3 12.0 24 49-72 1-24 (165)
129 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.3 1.2E-05 2.6E-10 80.2 13.5 24 49-72 4-27 (172)
130 cd01884 EF_Tu EF-Tu subfamily. 98.3 1.3E-06 2.8E-11 89.4 6.5 54 147-201 64-132 (195)
131 cd00882 Ras_like_GTPase Ras-li 98.3 2.7E-06 5.8E-11 79.9 8.3 54 149-202 46-117 (157)
132 PRK10512 selenocysteinyl-tRNA- 98.3 4.1E-06 8.8E-11 99.7 11.6 23 49-71 2-24 (614)
133 cd04154 Arl2 Arl2 subfamily. 98.3 6E-06 1.3E-10 82.0 11.0 26 46-71 13-38 (173)
134 smart00174 RHO Rho (Ras homolo 98.3 7.7E-06 1.7E-10 80.9 11.7 23 50-72 1-23 (174)
135 cd04101 RabL4 RabL4 (Rab-like4 98.3 5.5E-06 1.2E-10 81.0 10.6 22 49-70 2-23 (164)
136 cd04110 Rab35 Rab35 subfamily. 98.3 1.1E-05 2.4E-10 82.4 13.1 26 47-72 6-31 (199)
137 cd04151 Arl1 Arl1 subfamily. 98.3 3.3E-06 7.2E-11 82.4 8.9 24 49-72 1-24 (158)
138 cd00879 Sar1 Sar1 subfamily. 98.2 5.5E-06 1.2E-10 83.5 10.6 33 38-72 12-44 (190)
139 cd04169 RF3 RF3 subfamily. Pe 98.2 4.1E-06 9E-11 89.8 10.1 54 148-202 71-138 (267)
140 cd01888 eIF2_gamma eIF2-gamma 98.2 6.3E-06 1.4E-10 84.6 11.0 23 49-71 2-24 (203)
141 smart00178 SAR Sar1p-like memb 98.2 2.8E-06 6E-11 85.7 8.2 25 48-72 18-42 (184)
142 cd04107 Rab32_Rab38 Rab38/Rab3 98.2 1.3E-05 2.9E-10 81.8 13.0 24 49-72 2-25 (201)
143 cd01892 Miro2 Miro2 subfamily. 98.2 2E-05 4.3E-10 78.3 13.8 25 48-72 5-29 (169)
144 cd04135 Tc10 TC10 subfamily. 98.2 2.2E-05 4.8E-10 77.6 14.1 24 49-72 2-25 (174)
145 cd04111 Rab39 Rab39 subfamily. 98.2 1.8E-05 3.8E-10 81.9 13.9 25 48-72 3-27 (211)
146 cd04178 Nucleostemin_like Nucl 98.2 4.4E-06 9.5E-11 83.7 8.9 31 47-77 117-147 (172)
147 cd04148 RGK RGK subfamily. Th 98.2 1.8E-05 3.9E-10 82.4 13.8 24 49-72 2-25 (221)
148 COG1163 DRG Predicted GTPase [ 98.2 1.3E-05 2.9E-10 85.7 12.7 24 49-72 65-88 (365)
149 cd04125 RabA_like RabA-like su 98.2 1.7E-05 3.7E-10 79.9 13.1 25 48-72 1-25 (188)
150 cd04137 RheB Rheb (Ras Homolog 98.2 5.2E-06 1.1E-10 82.8 9.2 24 49-72 3-26 (180)
151 COG4917 EutP Ethanolamine util 98.2 2.5E-06 5.5E-11 79.1 6.2 30 48-77 2-31 (148)
152 cd00876 Ras Ras family. The R 98.2 4.8E-06 1E-10 80.6 8.7 24 49-72 1-24 (160)
153 cd04158 ARD1 ARD1 subfamily. 98.2 1.5E-05 3.3E-10 78.9 12.4 24 49-72 1-24 (169)
154 cd04122 Rab14 Rab14 subfamily. 98.2 5.9E-06 1.3E-10 81.3 9.3 26 48-73 3-28 (166)
155 cd04108 Rab36_Rab34 Rab34/Rab3 98.2 1.5E-05 3.2E-10 79.3 12.3 24 49-72 2-25 (170)
156 TIGR00487 IF-2 translation ini 98.2 1.5E-05 3.4E-10 94.2 14.4 102 46-201 86-201 (587)
157 cd04116 Rab9 Rab9 subfamily. 98.2 1.1E-05 2.5E-10 79.5 11.3 26 47-72 5-30 (170)
158 cd04160 Arfrp1 Arfrp1 subfamil 98.2 4.6E-06 1E-10 81.8 8.3 22 49-70 1-22 (167)
159 cd01870 RhoA_like RhoA-like su 98.2 2.5E-05 5.5E-10 77.3 13.5 25 48-72 2-26 (175)
160 PRK05306 infB translation init 98.2 1.2E-05 2.6E-10 97.5 13.1 101 46-201 289-403 (787)
161 cd04149 Arf6 Arf6 subfamily. 98.2 1.1E-05 2.3E-10 80.3 10.6 26 47-72 9-34 (168)
162 TIGR00437 feoB ferrous iron tr 98.2 7.7E-06 1.7E-10 97.0 11.2 19 54-72 1-19 (591)
163 PRK04004 translation initiatio 98.2 1.9E-05 4.1E-10 93.6 14.3 28 45-72 4-31 (586)
164 cd01849 YlqF_related_GTPase Yl 98.2 3.8E-06 8.3E-11 82.4 7.1 40 45-84 98-138 (155)
165 PLN03110 Rab GTPase; Provision 98.2 2.5E-05 5.5E-10 81.0 13.5 25 48-72 13-37 (216)
166 cd00877 Ran Ran (Ras-related n 98.2 1.4E-05 3E-10 79.2 11.0 24 49-72 2-25 (166)
167 CHL00189 infB translation init 98.1 9.9E-06 2.1E-10 97.4 11.3 27 46-72 243-269 (742)
168 cd04120 Rab12 Rab12 subfamily. 98.1 2.9E-05 6.4E-10 79.8 13.2 24 49-72 2-25 (202)
169 cd04109 Rab28 Rab28 subfamily. 98.1 1.6E-05 3.4E-10 82.3 11.4 24 49-72 2-25 (215)
170 cd04132 Rho4_like Rho4-like su 98.1 2.9E-05 6.2E-10 78.0 12.8 24 49-72 2-25 (187)
171 KOG2486 Predicted GTPase [Gene 98.1 4.9E-06 1.1E-10 87.1 7.2 53 149-202 184-263 (320)
172 cd04162 Arl9_Arfrp2_like Arl9/ 98.1 1.6E-05 3.4E-10 78.7 10.4 24 49-72 1-24 (164)
173 cd01855 YqeH YqeH. YqeH is an 98.1 8.4E-06 1.8E-10 82.6 8.2 42 23-72 111-152 (190)
174 cd04143 Rhes_like Rhes_like su 98.1 3.5E-05 7.6E-10 81.8 13.0 24 49-72 2-25 (247)
175 COG0536 Obg Predicted GTPase [ 98.1 3E-05 6.4E-10 83.7 12.3 23 49-71 161-183 (369)
176 PLN03108 Rab family protein; P 98.1 4.2E-05 9E-10 79.0 13.1 27 48-74 7-33 (210)
177 CHL00071 tufA elongation facto 98.1 6.1E-06 1.3E-10 93.9 7.5 54 148-202 75-143 (409)
178 PLN03118 Rab family protein; P 98.1 2E-05 4.3E-10 81.3 10.3 25 48-72 15-39 (211)
179 TIGR01393 lepA GTP-binding pro 98.1 3.5E-05 7.5E-10 91.6 13.5 117 48-201 4-136 (595)
180 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.0 1.9E-05 4.1E-10 78.7 9.6 26 47-72 15-40 (174)
181 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 9.2E-06 2E-10 78.4 6.9 24 49-72 85-108 (141)
182 cd04117 Rab15 Rab15 subfamily. 98.0 5.3E-05 1.2E-09 74.4 12.5 25 49-73 2-26 (161)
183 cd04130 Wrch_1 Wrch-1 subfamil 98.0 5.9E-05 1.3E-09 74.9 12.9 24 49-72 2-25 (173)
184 PLN03127 Elongation factor Tu; 98.0 1.3E-05 2.7E-10 92.2 9.1 117 46-201 60-191 (447)
185 cd04115 Rab33B_Rab33A Rab33B/R 98.0 1.3E-05 2.7E-10 79.5 8.0 25 48-72 3-27 (170)
186 cd04167 Snu114p Snu114p subfam 98.0 2.3E-05 4.9E-10 81.1 10.1 53 148-201 71-137 (213)
187 cd04134 Rho3 Rho3 subfamily. 98.0 6.1E-05 1.3E-09 76.2 12.9 24 49-72 2-25 (189)
188 PTZ00133 ADP-ribosylation fact 98.0 4.6E-05 9.9E-10 76.8 11.9 25 48-72 18-42 (182)
189 TIGR00484 EF-G translation elo 98.0 2.3E-05 5E-10 95.0 11.4 120 46-202 9-142 (689)
190 KOG1489 Predicted GTP-binding 98.0 2E-05 4.3E-10 84.1 8.9 25 47-71 196-220 (366)
191 cd04161 Arl2l1_Arl13_like Arl2 98.0 2.1E-05 4.6E-10 77.9 8.7 22 49-70 1-22 (167)
192 PF00735 Septin: Septin; Inte 98.0 2.7E-05 5.8E-10 84.1 9.9 28 49-76 6-33 (281)
193 cd01885 EF2 EF2 (for archaea a 98.0 2.1E-05 4.6E-10 82.1 8.8 52 148-200 73-138 (222)
194 PRK12317 elongation factor 1-a 98.0 1.5E-05 3.2E-10 91.3 8.2 128 49-201 8-153 (425)
195 cd04126 Rab20 Rab20 subfamily. 98.0 0.00018 4E-09 75.0 15.5 24 49-72 2-25 (220)
196 PRK00007 elongation factor G; 98.0 1.2E-05 2.6E-10 97.4 7.6 121 46-203 9-143 (693)
197 KOG1954 Endocytosis/signaling 98.0 0.00016 3.4E-09 78.3 14.8 139 45-204 56-228 (532)
198 smart00177 ARF ARF-like small 97.9 0.0001 2.2E-09 73.6 12.7 26 47-72 13-38 (175)
199 PRK05433 GTP-binding protein L 97.9 9E-05 1.9E-09 88.2 13.4 53 148-201 74-140 (600)
200 cd04155 Arl3 Arl3 subfamily. 97.9 3.5E-05 7.5E-10 76.2 8.4 27 46-72 13-39 (173)
201 TIGR02836 spore_IV_A stage IV 97.9 9.8E-05 2.1E-09 82.1 12.5 42 30-76 5-46 (492)
202 PLN03071 GTP-binding nuclear p 97.9 7.8E-05 1.7E-09 77.6 10.9 25 48-72 14-38 (219)
203 PLN00223 ADP-ribosylation fact 97.9 0.00015 3.3E-09 73.0 12.7 25 48-72 18-42 (181)
204 PRK12739 elongation factor G; 97.9 2.5E-05 5.4E-10 94.7 8.0 54 148-202 73-140 (691)
205 cd04150 Arf1_5_like Arf1-Arf5- 97.9 6.3E-05 1.4E-09 73.9 9.2 24 49-72 2-25 (159)
206 TIGR03596 GTPase_YlqF ribosome 97.8 2.9E-05 6.3E-10 83.8 7.0 31 47-77 118-148 (276)
207 cd01899 Ygr210 Ygr210 subfamil 97.8 0.00092 2E-08 73.5 18.3 37 50-86 1-37 (318)
208 TIGR02034 CysN sulfate adenyly 97.8 3.4E-05 7.5E-10 87.7 7.4 68 132-202 65-148 (406)
209 cd01874 Cdc42 Cdc42 subfamily. 97.8 0.00029 6.2E-09 70.5 13.2 24 49-72 3-26 (175)
210 cd01882 BMS1 Bms1. Bms1 is an 97.8 5.3E-05 1.1E-09 79.3 8.1 55 147-202 82-148 (225)
211 cd01900 YchF YchF subfamily. 97.8 3.3E-05 7.1E-10 83.0 6.6 37 50-86 1-37 (274)
212 PRK00049 elongation factor Tu; 97.8 2.9E-05 6.3E-10 88.0 6.5 115 48-201 13-142 (396)
213 PRK09563 rbgA GTPase YlqF; Rev 97.8 3.5E-05 7.7E-10 83.5 6.9 31 47-77 121-151 (287)
214 KOG0410 Predicted GTP binding 97.8 2.2E-05 4.7E-10 83.8 5.0 42 43-84 174-215 (410)
215 PLN03126 Elongation factor Tu; 97.8 4.1E-05 8.9E-10 88.5 7.5 116 48-202 82-212 (478)
216 PRK05506 bifunctional sulfate 97.8 4.7E-05 1E-09 91.5 8.3 52 148-201 104-171 (632)
217 TIGR00485 EF-Tu translation el 97.8 3E-05 6.5E-10 87.9 6.2 115 49-202 14-143 (394)
218 cd01856 YlqF YlqF. Proteins o 97.8 0.00011 2.4E-09 73.3 9.7 29 47-75 115-143 (171)
219 PRK09435 membrane ATPase/prote 97.8 0.001 2.3E-08 73.4 17.9 24 47-70 56-79 (332)
220 PRK12736 elongation factor Tu; 97.8 3.4E-05 7.3E-10 87.4 6.5 114 49-201 14-142 (394)
221 cd04128 Spg1 Spg1p. Spg1p (se 97.8 0.00044 9.6E-09 69.7 13.8 24 49-72 2-25 (182)
222 PTZ00258 GTP-binding protein; 97.8 6.8E-05 1.5E-09 84.1 8.6 44 45-88 19-62 (390)
223 PRK12735 elongation factor Tu; 97.8 4.8E-05 1E-09 86.3 7.3 53 148-201 75-142 (396)
224 cd01883 EF1_alpha Eukaryotic e 97.8 2.2E-05 4.8E-10 81.6 4.3 21 50-70 2-22 (219)
225 cd04105 SR_beta Signal recogni 97.7 0.00011 2.3E-09 75.6 9.3 25 48-72 1-25 (203)
226 cd04129 Rho2 Rho2 subfamily. 97.7 0.00042 9E-09 70.0 13.3 24 49-72 3-26 (187)
227 PRK09601 GTP-binding protein Y 97.7 8E-05 1.7E-09 82.7 8.7 38 48-86 3-41 (364)
228 TIGR03680 eif2g_arch translati 97.7 0.00018 3.9E-09 81.9 11.6 22 49-70 6-27 (406)
229 KOG1490 GTP-binding protein CR 97.7 7.2E-05 1.6E-09 83.9 7.8 123 27-203 146-297 (620)
230 PRK05124 cysN sulfate adenylyl 97.7 6.7E-05 1.5E-09 86.9 8.0 28 44-71 24-51 (474)
231 PF08477 Miro: Miro-like prote 97.7 7.5E-05 1.6E-09 69.1 6.6 24 49-72 1-24 (119)
232 cd04121 Rab40 Rab40 subfamily. 97.7 0.00044 9.5E-09 70.4 12.7 25 48-72 7-31 (189)
233 PRK00741 prfC peptide chain re 97.7 0.00017 3.7E-09 84.5 10.8 53 149-202 80-146 (526)
234 cd01871 Rac1_like Rac1-like su 97.7 0.00068 1.5E-08 67.7 13.6 24 49-72 3-26 (174)
235 TIGR01394 TypA_BipA GTP-bindin 97.7 0.00012 2.6E-09 86.9 9.2 54 148-202 64-131 (594)
236 cd01851 GBP Guanylate-binding 97.7 7.6E-05 1.7E-09 78.0 6.5 38 46-83 6-46 (224)
237 TIGR00490 aEF-2 translation el 97.6 0.00021 4.5E-09 87.2 10.9 53 148-201 86-152 (720)
238 PRK04000 translation initiatio 97.6 0.00025 5.4E-09 80.9 10.4 23 48-70 10-32 (411)
239 COG1100 GTPase SAR1 and relate 97.6 0.00062 1.3E-08 70.1 12.2 25 48-72 6-30 (219)
240 COG1161 Predicted GTPases [Gen 97.6 0.00015 3.3E-09 79.9 8.0 24 49-72 134-157 (322)
241 PRK10218 GTP-binding protein; 97.6 0.00035 7.6E-09 83.0 10.8 53 148-201 68-134 (607)
242 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.5 0.0014 3E-08 69.0 14.2 26 47-72 13-38 (232)
243 PRK13796 GTPase YqeH; Provisio 97.5 8E-05 1.7E-09 83.5 5.1 23 49-71 162-184 (365)
244 PTZ00416 elongation factor 2; 97.5 0.00014 3.1E-09 89.8 7.7 51 149-200 93-157 (836)
245 PLN00116 translation elongatio 97.5 0.0002 4.3E-09 88.7 8.7 51 149-200 99-163 (843)
246 TIGR00750 lao LAO/AO transport 97.5 0.0011 2.4E-08 72.5 13.6 25 46-70 33-57 (300)
247 PRK07560 elongation factor EF- 97.5 0.00034 7.5E-09 85.4 10.3 117 46-200 19-152 (731)
248 PRK12288 GTPase RsgA; Reviewed 97.5 0.00013 2.9E-09 81.0 5.9 25 49-73 207-231 (347)
249 PRK12289 GTPase RsgA; Reviewed 97.5 0.00015 3.3E-09 80.6 6.4 28 49-76 174-201 (352)
250 cd04102 RabL3 RabL3 (Rab-like3 97.5 0.00093 2E-08 68.8 11.7 25 49-73 2-26 (202)
251 PRK13351 elongation factor G; 97.5 0.00036 7.9E-09 84.7 10.1 54 148-202 73-140 (687)
252 TIGR03597 GTPase_YqeH ribosome 97.4 0.00013 2.8E-09 81.8 5.1 24 48-71 155-178 (360)
253 PF00071 Ras: Ras family; Int 97.4 0.00027 5.9E-09 68.8 6.9 24 49-72 1-24 (162)
254 PTZ00327 eukaryotic translatio 97.4 0.00048 1E-08 79.3 9.9 23 49-71 36-58 (460)
255 PF03193 DUF258: Protein of un 97.4 8.6E-05 1.9E-09 73.3 3.2 25 48-72 36-60 (161)
256 cd04133 Rop_like Rop subfamily 97.4 0.0023 5E-08 64.3 13.5 24 49-72 3-26 (176)
257 cd04103 Centaurin_gamma Centau 97.4 0.0015 3.2E-08 64.3 11.9 24 49-72 2-25 (158)
258 TIGR00503 prfC peptide chain r 97.4 0.00046 1E-08 80.9 9.5 53 148-201 80-146 (527)
259 cd01859 MJ1464 MJ1464. This f 97.4 0.00085 1.8E-08 65.6 9.9 44 24-72 83-126 (156)
260 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.4 0.00063 1.4E-08 71.1 9.2 24 49-72 3-26 (222)
261 TIGR00483 EF-1_alpha translati 97.4 0.00029 6.3E-09 80.8 6.8 67 132-201 70-155 (426)
262 cd01875 RhoG RhoG subfamily. 97.4 0.0025 5.4E-08 64.7 12.8 25 48-72 4-28 (191)
263 cd04131 Rnd Rnd subfamily. Th 97.3 0.00082 1.8E-08 67.6 9.0 24 49-72 3-26 (178)
264 KOG2655 Septin family protein 97.3 0.00047 1E-08 75.9 7.7 24 49-72 23-46 (366)
265 PTZ00132 GTP-binding nuclear p 97.3 0.0054 1.2E-07 63.3 15.0 26 45-70 7-33 (215)
266 PRK12727 flagellar biosynthesi 97.3 0.002 4.3E-08 74.6 12.6 80 149-233 430-528 (559)
267 TIGR00157 ribosome small subun 97.3 0.00033 7.1E-09 74.3 6.0 25 48-72 121-145 (245)
268 PRK09602 translation-associate 97.3 0.0004 8.7E-09 78.6 7.0 39 48-86 2-40 (396)
269 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.3 0.0018 4E-08 64.9 10.5 29 44-72 19-47 (221)
270 PRK14722 flhF flagellar biosyn 97.3 0.00029 6.4E-09 78.7 5.1 83 149-233 217-325 (374)
271 PRK11889 flhF flagellar biosyn 97.3 0.00073 1.6E-08 75.5 8.1 154 48-233 242-421 (436)
272 PRK14723 flhF flagellar biosyn 97.2 0.0016 3.6E-08 78.4 11.6 151 49-233 187-367 (767)
273 COG5019 CDC3 Septin family pro 97.2 0.0012 2.6E-08 72.4 9.4 23 49-71 25-47 (373)
274 PRK14721 flhF flagellar biosyn 97.2 0.0015 3.3E-08 74.2 10.6 149 49-233 193-370 (420)
275 TIGR01425 SRP54_euk signal rec 97.2 0.0022 4.8E-08 72.9 11.6 58 149-209 184-261 (429)
276 smart00176 RAN Ran (Ras-relate 97.2 0.0019 4E-08 66.4 10.0 20 53-72 1-20 (200)
277 KOG1486 GTP-binding protein DR 97.1 0.0036 7.7E-08 65.0 11.0 24 48-71 63-86 (364)
278 PRK00098 GTPase RsgA; Reviewed 97.1 0.00074 1.6E-08 73.7 6.6 24 49-72 166-189 (298)
279 KOG1547 Septin CDC10 and relat 97.1 0.0029 6.2E-08 65.3 10.0 41 27-72 31-71 (336)
280 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.1 0.002 4.3E-08 65.2 8.8 24 49-72 7-30 (182)
281 KOG1532 GTPase XAB1, interacts 97.1 0.01 2.2E-07 62.6 13.8 204 46-289 18-277 (366)
282 COG2229 Predicted GTPase [Gene 97.1 0.0015 3.2E-08 65.1 7.3 114 45-202 8-136 (187)
283 PF09439 SRPRB: Signal recogni 97.1 0.00088 1.9E-08 67.5 5.9 26 47-72 3-28 (181)
284 PTZ00141 elongation factor 1- 97.1 0.001 2.2E-08 76.6 7.2 22 49-70 9-30 (446)
285 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.00091 2E-08 72.6 6.2 26 48-73 162-187 (287)
286 PRK10416 signal recognition pa 96.9 0.0049 1.1E-07 67.9 10.7 71 149-224 198-294 (318)
287 PRK05703 flhF flagellar biosyn 96.9 0.0065 1.4E-07 69.5 11.9 152 49-233 223-401 (424)
288 PF00025 Arf: ADP-ribosylation 96.9 0.0056 1.2E-07 61.3 10.1 25 47-71 14-38 (175)
289 PRK06731 flhF flagellar biosyn 96.8 0.0024 5.1E-08 68.6 7.2 154 47-232 75-254 (270)
290 PRK12740 elongation factor G; 96.8 0.0018 3.9E-08 78.5 7.0 54 148-202 60-127 (668)
291 PRK12726 flagellar biosynthesi 96.8 0.0094 2E-07 66.5 11.5 153 49-232 208-385 (407)
292 cd03114 ArgK-like The function 96.7 0.0071 1.5E-07 59.1 9.1 22 49-70 1-22 (148)
293 cd01873 RhoBTB RhoBTB subfamil 96.7 0.0057 1.2E-07 62.5 8.7 24 48-71 3-27 (195)
294 PLN00023 GTP-binding protein; 96.7 0.0056 1.2E-07 67.1 8.8 28 45-72 19-46 (334)
295 COG5256 TEF1 Translation elong 96.7 0.0061 1.3E-07 67.8 9.1 68 131-201 69-159 (428)
296 PRK12723 flagellar biosynthesi 96.7 0.0046 1E-07 69.7 8.4 154 49-233 176-356 (388)
297 PLN00043 elongation factor 1-a 96.7 0.0026 5.7E-08 73.2 6.5 21 49-69 9-29 (447)
298 TIGR00073 hypB hydrogenase acc 96.7 0.0073 1.6E-07 62.2 9.2 25 46-70 21-45 (207)
299 PRK10867 signal recognition pa 96.7 0.0074 1.6E-07 69.0 10.0 71 149-224 185-275 (433)
300 PRK13768 GTPase; Provisional 96.7 0.0054 1.2E-07 65.4 8.4 22 49-70 4-25 (253)
301 COG0532 InfB Translation initi 96.7 0.0065 1.4E-07 69.6 9.4 102 45-202 3-122 (509)
302 COG1162 Predicted GTPases [Gen 96.6 0.0019 4.2E-08 69.5 4.7 22 49-70 166-187 (301)
303 PRK14974 cell division protein 96.6 0.0024 5.2E-08 70.7 5.4 71 149-224 224-314 (336)
304 PRK06995 flhF flagellar biosyn 96.6 0.0076 1.6E-07 69.6 9.7 80 149-233 336-435 (484)
305 COG1703 ArgK Putative periplas 96.6 0.044 9.6E-07 58.9 14.1 25 46-70 50-74 (323)
306 PRK12724 flagellar biosynthesi 96.5 0.006 1.3E-07 69.0 7.7 80 149-233 301-403 (432)
307 cd03112 CobW_like The function 96.4 0.017 3.6E-07 57.0 9.6 23 48-70 1-23 (158)
308 COG0480 FusA Translation elong 96.4 0.011 2.4E-07 71.1 9.8 121 46-202 9-143 (697)
309 KOG0093 GTPase Rab3, small G p 96.4 0.02 4.4E-07 54.9 9.0 25 49-73 23-47 (193)
310 PRK00771 signal recognition pa 96.3 0.011 2.5E-07 67.6 8.8 71 149-224 177-267 (437)
311 cd03115 SRP The signal recogni 96.3 0.013 2.8E-07 58.3 8.2 57 149-208 84-160 (173)
312 COG3276 SelB Selenocysteine-sp 96.3 0.011 2.4E-07 66.2 8.0 95 149-275 51-161 (447)
313 PRK10463 hydrogenase nickel in 96.3 0.13 2.7E-06 55.9 15.7 26 45-70 102-127 (290)
314 TIGR00092 GTP-binding protein 96.3 0.0092 2E-07 66.6 7.2 37 49-85 4-41 (368)
315 TIGR00064 ftsY signal recognit 96.1 0.024 5.1E-07 61.2 9.5 71 149-224 156-252 (272)
316 PF03308 ArgK: ArgK protein; 96.1 0.067 1.5E-06 56.7 12.0 25 46-70 28-52 (266)
317 KOG0092 GTPase Rab5/YPT51 and 96.0 0.072 1.6E-06 53.6 11.1 24 49-72 7-30 (200)
318 KOG1491 Predicted GTP-binding 96.0 0.0069 1.5E-07 65.6 4.3 39 46-84 19-57 (391)
319 TIGR00959 ffh signal recogniti 96.0 0.031 6.8E-07 63.9 9.8 71 149-224 184-274 (428)
320 COG0012 Predicted GTPase, prob 95.9 0.016 3.4E-07 64.2 7.0 37 48-84 3-39 (372)
321 KOG2484 GTPase [General functi 95.9 0.0061 1.3E-07 67.3 3.7 29 49-77 254-282 (435)
322 KOG1424 Predicted GTP-binding 95.8 0.0095 2.1E-07 67.7 4.8 26 47-72 314-339 (562)
323 KOG1145 Mitochondrial translat 95.8 0.029 6.4E-07 64.2 8.6 99 46-200 152-266 (683)
324 PF00448 SRP54: SRP54-type pro 95.8 0.008 1.7E-07 61.6 3.9 74 149-228 85-179 (196)
325 KOG2485 Conserved ATP/GTP bind 95.7 0.023 5E-07 61.1 6.7 25 46-70 142-166 (335)
326 KOG2203 GTP-binding protein [G 95.6 0.013 2.9E-07 66.6 5.0 41 32-72 21-62 (772)
327 KOG0462 Elongation factor-type 95.6 0.12 2.6E-06 59.4 12.3 52 149-201 126-191 (650)
328 PF04670 Gtr1_RagA: Gtr1/RagA 95.6 0.069 1.5E-06 56.2 9.8 100 49-203 1-127 (232)
329 KOG0090 Signal recognition par 95.5 0.047 1E-06 55.9 7.9 23 48-70 39-61 (238)
330 COG1419 FlhF Flagellar GTP-bin 95.4 0.078 1.7E-06 59.5 10.0 152 49-233 205-382 (407)
331 KOG0395 Ras-related GTPase [Ge 95.4 0.044 9.6E-07 56.2 7.4 26 47-72 3-28 (196)
332 COG0481 LepA Membrane GTPase L 95.2 0.18 4E-06 57.1 12.1 67 135-202 61-143 (603)
333 TIGR03348 VI_IcmF type VI secr 95.2 0.062 1.3E-06 69.2 9.6 33 43-77 107-139 (1169)
334 KOG1144 Translation initiation 95.2 0.2 4.3E-06 59.3 12.5 119 43-200 471-605 (1064)
335 KOG0078 GTP-binding protein SE 95.2 0.22 4.7E-06 51.0 11.4 107 44-202 9-132 (207)
336 KOG1143 Predicted translation 95.1 0.037 8E-07 60.5 6.1 52 149-203 250-319 (591)
337 KOG0461 Selenocysteine-specifi 95.1 0.14 3E-06 55.8 10.2 54 149-205 71-140 (522)
338 PRK14845 translation initiatio 95.1 0.12 2.5E-06 65.2 11.0 52 147-201 525-592 (1049)
339 PRK01889 GTPase RsgA; Reviewed 94.8 0.03 6.4E-07 62.8 4.5 23 49-71 197-219 (356)
340 KOG1707 Predicted Ras related/ 94.5 0.1 2.2E-06 60.5 7.9 25 48-72 10-34 (625)
341 KOG0458 Elongation factor 1 al 94.5 0.058 1.2E-06 62.4 5.8 72 131-205 239-333 (603)
342 KOG0468 U5 snRNP-specific prot 94.3 0.094 2E-06 61.3 7.0 118 48-200 129-262 (971)
343 COG1136 SalX ABC-type antimicr 94.3 0.037 8E-07 57.8 3.5 25 49-74 33-57 (226)
344 COG3172 NadR Predicted ATPase/ 94.2 0.064 1.4E-06 52.6 4.7 23 48-70 9-31 (187)
345 KOG2423 Nucleolar GTPase [Gene 94.2 0.064 1.4E-06 59.2 5.2 24 49-72 309-332 (572)
346 COG1101 PhnK ABC-type uncharac 94.1 0.041 8.9E-07 56.6 3.3 27 49-76 34-60 (263)
347 COG1217 TypA Predicted membran 93.7 0.18 3.8E-06 57.1 7.5 56 149-205 69-138 (603)
348 TIGR03499 FlhF flagellar biosy 93.6 0.11 2.3E-06 56.4 5.8 22 49-70 196-217 (282)
349 PF13555 AAA_29: P-loop contai 93.4 0.077 1.7E-06 44.0 3.2 21 49-69 25-45 (62)
350 COG5192 BMS1 GTP-binding prote 93.4 0.17 3.7E-06 57.9 6.9 28 43-70 64-92 (1077)
351 COG3840 ThiQ ABC-type thiamine 93.3 0.07 1.5E-06 53.6 3.3 28 49-77 27-54 (231)
352 PF00005 ABC_tran: ABC transpo 93.3 0.067 1.5E-06 50.7 3.1 23 49-71 13-35 (137)
353 KOG1487 GTP-binding protein DR 93.1 0.13 2.8E-06 54.1 5.0 29 49-78 61-89 (358)
354 KOG0095 GTPase Rab30, small G 93.0 0.69 1.5E-05 44.7 9.3 105 47-203 7-128 (213)
355 COG4107 PhnK ABC-type phosphon 93.0 0.085 1.8E-06 52.4 3.3 31 49-81 34-64 (258)
356 PF13521 AAA_28: AAA domain; P 92.9 0.06 1.3E-06 53.0 2.2 22 49-70 1-22 (163)
357 PF03029 ATP_bind_1: Conserved 92.9 0.14 3.1E-06 54.1 5.1 36 52-93 1-36 (238)
358 cd00071 GMPK Guanosine monopho 92.8 0.095 2.1E-06 50.4 3.4 21 50-70 2-22 (137)
359 PF03205 MobB: Molybdopterin g 92.7 0.093 2E-06 50.8 3.1 23 48-70 1-23 (140)
360 PF05879 RHD3: Root hair defec 92.6 0.065 1.4E-06 65.6 2.4 24 53-77 1-24 (742)
361 cd01130 VirB11-like_ATPase Typ 92.6 0.098 2.1E-06 52.9 3.3 22 49-70 27-48 (186)
362 KOG0073 GTP-binding ADP-ribosy 92.5 0.56 1.2E-05 46.3 8.1 24 48-71 17-40 (185)
363 KOG4252 GTP-binding protein [S 92.3 0.35 7.6E-06 48.1 6.5 22 48-69 21-42 (246)
364 PRK13695 putative NTPase; Prov 92.3 0.64 1.4E-05 46.3 8.7 22 49-70 2-23 (174)
365 TIGR03263 guanyl_kin guanylate 92.2 0.13 2.9E-06 51.2 3.8 22 49-70 3-24 (180)
366 COG0541 Ffh Signal recognition 92.2 2.3 5E-05 48.3 13.6 56 149-207 184-259 (451)
367 COG1116 TauB ABC-type nitrate/ 92.2 0.11 2.5E-06 54.5 3.2 23 49-71 31-53 (248)
368 cd03261 ABC_Org_Solvent_Resist 92.1 0.12 2.7E-06 54.0 3.5 23 49-71 28-50 (235)
369 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.1 0.13 2.7E-06 53.2 3.4 23 49-71 32-54 (218)
370 cd03264 ABC_drug_resistance_li 92.0 0.14 2.9E-06 52.7 3.5 22 49-70 27-48 (211)
371 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.9 0.14 3.1E-06 49.6 3.4 29 49-79 28-56 (144)
372 COG4108 PrfC Peptide chain rel 91.9 0.44 9.6E-06 53.7 7.5 121 49-202 14-148 (528)
373 cd03225 ABC_cobalt_CbiO_domain 91.9 0.14 3.1E-06 52.5 3.6 23 49-71 29-51 (211)
374 KOG0098 GTPase Rab2, small G p 91.7 0.8 1.7E-05 46.1 8.3 32 46-77 5-36 (216)
375 PRK00300 gmk guanylate kinase; 91.7 0.14 3.1E-06 52.2 3.4 36 49-84 7-43 (205)
376 KOG0084 GTPase Rab1/YPT1, smal 91.7 0.32 7E-06 49.2 5.7 26 47-72 9-34 (205)
377 TIGR01166 cbiO cobalt transpor 91.7 0.15 3.3E-06 51.5 3.5 23 49-71 20-42 (190)
378 cd03265 ABC_DrrA DrrA is the A 91.7 0.15 3.2E-06 52.8 3.5 23 49-71 28-50 (220)
379 PRK11629 lolD lipoprotein tran 91.6 0.15 3.2E-06 53.4 3.4 23 49-71 37-59 (233)
380 PRK13541 cytochrome c biogenes 91.5 0.17 3.8E-06 51.4 3.7 23 49-71 28-50 (195)
381 COG5257 GCD11 Translation init 91.5 0.7 1.5E-05 50.2 8.2 23 49-71 12-34 (415)
382 cd03224 ABC_TM1139_LivF_branch 91.5 0.17 3.6E-06 52.4 3.6 23 49-71 28-50 (222)
383 cd03258 ABC_MetN_methionine_tr 91.4 0.17 3.7E-06 52.8 3.6 23 49-71 33-55 (233)
384 TIGR02673 FtsE cell division A 91.4 0.17 3.7E-06 52.0 3.6 23 49-71 30-52 (214)
385 cd03215 ABC_Carb_Monos_II This 91.4 0.19 4.2E-06 50.5 3.8 29 49-79 28-56 (182)
386 KOG0075 GTP-binding ADP-ribosy 91.3 0.29 6.3E-06 47.3 4.6 24 48-71 21-44 (186)
387 cd03263 ABC_subfamily_A The AB 91.3 0.18 3.9E-06 52.2 3.6 23 49-71 30-52 (220)
388 cd00267 ABC_ATPase ABC (ATP-bi 91.3 0.2 4.3E-06 49.0 3.7 31 49-81 27-57 (157)
389 cd03218 ABC_YhbG The ABC trans 91.3 0.19 4.2E-06 52.4 3.8 23 49-71 28-50 (232)
390 cd03369 ABCC_NFT1 Domain 2 of 91.2 0.18 3.9E-06 51.7 3.5 29 49-79 36-64 (207)
391 COG0050 TufB GTPases - transla 91.2 0.42 9.2E-06 51.3 6.2 114 49-202 14-143 (394)
392 cd03217 ABC_FeS_Assembly ABC-t 91.2 0.19 4.2E-06 51.4 3.7 23 49-71 28-50 (200)
393 cd03292 ABC_FtsE_transporter F 91.2 0.17 3.8E-06 51.9 3.4 23 49-71 29-51 (214)
394 PRK13540 cytochrome c biogenes 91.2 0.18 4E-06 51.4 3.5 23 49-71 29-51 (200)
395 KOG3859 Septins (P-loop GTPase 91.2 0.22 4.7E-06 52.8 4.0 24 49-72 44-67 (406)
396 TIGR01978 sufC FeS assembly AT 91.2 0.19 4.2E-06 52.7 3.7 22 49-70 28-49 (243)
397 cd03226 ABC_cobalt_CbiO_domain 91.1 0.18 4E-06 51.5 3.5 23 49-71 28-50 (205)
398 PRK13851 type IV secretion sys 91.1 0.17 3.7E-06 56.4 3.4 29 49-79 164-192 (344)
399 cd03269 ABC_putative_ATPase Th 91.1 0.19 4.1E-06 51.6 3.5 23 49-71 28-50 (210)
400 cd03256 ABC_PhnC_transporter A 91.1 0.19 4E-06 52.7 3.5 23 49-71 29-51 (241)
401 cd03222 ABC_RNaseL_inhibitor T 91.1 0.18 4E-06 50.8 3.3 23 49-71 27-49 (177)
402 cd03266 ABC_NatA_sodium_export 91.1 0.19 4.2E-06 51.8 3.5 23 49-71 33-55 (218)
403 KOG0463 GTP-binding protein GP 91.0 0.32 7E-06 53.4 5.2 61 139-202 210-288 (641)
404 TIGR03608 L_ocin_972_ABC putat 91.0 0.21 4.6E-06 51.0 3.7 23 49-71 26-48 (206)
405 TIGR00960 3a0501s02 Type II (G 91.0 0.19 4.2E-06 51.8 3.4 23 49-71 31-53 (216)
406 cd03219 ABC_Mj1267_LivG_branch 91.0 0.21 4.4E-06 52.3 3.7 23 49-71 28-50 (236)
407 PRK13651 cobalt transporter AT 91.0 0.19 4.1E-06 55.1 3.5 23 49-71 35-57 (305)
408 TIGR02315 ABC_phnC phosphonate 90.9 0.19 4.2E-06 52.8 3.5 23 49-71 30-52 (243)
409 cd03216 ABC_Carb_Monos_I This 90.9 0.21 4.6E-06 49.3 3.5 23 49-71 28-50 (163)
410 PRK14250 phosphate ABC transpo 90.9 0.2 4.4E-06 52.7 3.6 23 49-71 31-53 (241)
411 COG1341 Predicted GTPase or GT 90.9 0.31 6.8E-06 54.6 5.1 25 46-70 72-96 (398)
412 cd03232 ABC_PDR_domain2 The pl 90.9 0.22 4.7E-06 50.6 3.6 31 49-79 35-65 (192)
413 TIGR01360 aden_kin_iso1 adenyl 90.9 0.18 3.8E-06 50.5 3.0 26 46-71 2-30 (188)
414 COG2895 CysN GTPases - Sulfate 90.8 0.67 1.5E-05 51.0 7.4 136 46-205 5-157 (431)
415 cd03259 ABC_Carb_Solutes_like 90.8 0.22 4.7E-06 51.3 3.7 23 49-71 28-50 (213)
416 cd03293 ABC_NrtD_SsuB_transpor 90.8 0.2 4.4E-06 51.8 3.5 23 49-71 32-54 (220)
417 PRK11124 artP arginine transpo 90.8 0.2 4.4E-06 52.6 3.5 23 49-71 30-52 (242)
418 COG4962 CpaF Flp pilus assembl 90.8 0.22 4.9E-06 54.7 3.8 22 49-70 175-196 (355)
419 PRK13543 cytochrome c biogenes 90.8 0.22 4.8E-06 51.4 3.7 28 49-78 39-66 (214)
420 CHL00131 ycf16 sulfate ABC tra 90.8 0.22 4.7E-06 52.7 3.7 22 49-70 35-56 (252)
421 cd03254 ABCC_Glucan_exporter_l 90.7 0.23 5E-06 51.6 3.8 28 49-78 31-58 (229)
422 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.7 0.21 4.6E-06 52.3 3.5 29 49-79 31-59 (238)
423 cd03301 ABC_MalK_N The N-termi 90.7 0.22 4.7E-06 51.3 3.5 23 49-71 28-50 (213)
424 PRK15112 antimicrobial peptide 90.7 0.23 5E-06 53.2 3.8 28 49-78 41-68 (267)
425 cd03260 ABC_PstB_phosphate_tra 90.7 0.19 4.1E-06 52.3 3.1 23 49-71 28-50 (227)
426 PRK15177 Vi polysaccharide exp 90.7 0.23 5E-06 51.4 3.7 31 49-81 15-45 (213)
427 cd03245 ABCC_bacteriocin_expor 90.7 0.22 4.9E-06 51.4 3.6 28 49-78 32-59 (220)
428 cd03262 ABC_HisP_GlnQ_permease 90.7 0.23 4.9E-06 51.1 3.6 23 49-71 28-50 (213)
429 cd03230 ABC_DR_subfamily_A Thi 90.6 0.23 5E-06 49.5 3.5 23 49-71 28-50 (173)
430 cd03253 ABCC_ATM1_transporter 90.5 0.22 4.8E-06 52.0 3.5 28 49-78 29-56 (236)
431 cd03229 ABC_Class3 This class 90.5 0.25 5.4E-06 49.5 3.7 28 49-78 28-55 (178)
432 KOG0087 GTPase Rab11/YPT3, sma 90.5 0.53 1.2E-05 48.2 5.9 27 46-72 13-39 (222)
433 TIGR02324 CP_lyasePhnL phospho 90.5 0.24 5.1E-06 51.4 3.6 23 49-71 36-58 (224)
434 cd03236 ABC_RNaseL_inhibitor_d 90.5 0.25 5.4E-06 52.8 3.8 30 49-80 28-57 (255)
435 cd03231 ABC_CcmA_heme_exporter 90.5 0.26 5.6E-06 50.4 3.8 28 49-78 28-55 (201)
436 PRK13641 cbiO cobalt transport 90.4 0.23 4.9E-06 53.9 3.5 28 49-78 35-62 (287)
437 COG0410 LivF ABC-type branched 90.4 0.24 5.2E-06 51.6 3.5 23 49-71 31-53 (237)
438 PRK13539 cytochrome c biogenes 90.4 0.26 5.7E-06 50.6 3.8 23 49-71 30-52 (207)
439 cd03268 ABC_BcrA_bacitracin_re 90.4 0.23 5.1E-06 50.8 3.4 23 49-71 28-50 (208)
440 cd03297 ABC_ModC_molybdenum_tr 90.3 0.25 5.4E-06 50.9 3.6 24 48-71 24-47 (214)
441 KOG3883 Ras family small GTPas 90.3 2.1 4.6E-05 41.8 9.5 23 49-71 11-33 (198)
442 PRK13645 cbiO cobalt transport 90.3 0.24 5.2E-06 53.7 3.6 23 49-71 39-61 (289)
443 TIGR03740 galliderm_ABC gallid 90.3 0.24 5.2E-06 51.4 3.4 28 49-78 28-55 (223)
444 cd03235 ABC_Metallic_Cations A 90.3 0.25 5.4E-06 50.8 3.5 23 49-71 27-49 (213)
445 PRK10895 lipopolysaccharide AB 90.3 0.25 5.4E-06 51.9 3.6 23 49-71 31-53 (241)
446 cd03257 ABC_NikE_OppD_transpor 90.2 0.25 5.5E-06 51.2 3.6 23 49-71 33-55 (228)
447 TIGR02211 LolD_lipo_ex lipopro 90.2 0.26 5.6E-06 51.0 3.6 23 49-71 33-55 (221)
448 TIGR03864 PQQ_ABC_ATP ABC tran 90.2 0.26 5.6E-06 51.7 3.6 23 49-71 29-51 (236)
449 PRK11248 tauB taurine transpor 90.2 0.25 5.5E-06 52.6 3.6 23 49-71 29-51 (255)
450 PRK10584 putative ABC transpor 90.2 0.25 5.5E-06 51.4 3.5 23 49-71 38-60 (228)
451 PRK13635 cbiO cobalt transport 90.2 0.24 5.3E-06 53.5 3.5 28 49-78 35-62 (279)
452 cd03246 ABCC_Protease_Secretio 90.2 0.28 6E-06 48.9 3.7 29 49-79 30-58 (173)
453 PRK10908 cell division protein 90.2 0.25 5.4E-06 51.2 3.4 28 49-78 30-57 (222)
454 PRK13643 cbiO cobalt transport 90.2 0.26 5.6E-06 53.5 3.7 28 49-78 34-61 (288)
455 cd03298 ABC_ThiQ_thiamine_tran 90.1 0.28 6.1E-06 50.4 3.8 23 49-71 26-48 (211)
456 TIGR02323 CP_lyasePhnK phospho 90.1 0.26 5.6E-06 52.2 3.6 23 49-71 31-53 (253)
457 cd03291 ABCC_CFTR1 The CFTR su 90.1 0.28 6E-06 53.3 3.8 30 49-80 65-94 (282)
458 cd03214 ABC_Iron-Siderophores_ 90.0 0.3 6.6E-06 49.0 3.8 28 49-78 27-54 (180)
459 COG1120 FepC ABC-type cobalami 90.0 0.28 6E-06 52.3 3.6 22 49-70 30-51 (258)
460 PRK13648 cbiO cobalt transport 90.0 0.27 5.9E-06 52.7 3.6 23 49-71 37-59 (269)
461 COG4559 ABC-type hemin transpo 90.0 0.27 5.9E-06 50.6 3.4 27 49-76 29-55 (259)
462 cd03278 ABC_SMC_barmotin Barmo 90.0 0.17 3.7E-06 51.8 2.0 23 48-70 23-45 (197)
463 PRK13638 cbiO cobalt transport 89.9 0.26 5.6E-06 52.9 3.5 23 49-71 29-51 (271)
464 PRK09580 sufC cysteine desulfu 89.9 0.27 5.8E-06 51.9 3.5 23 49-71 29-51 (248)
465 cd03250 ABCC_MRP_domain1 Domai 89.9 0.28 6.1E-06 50.1 3.6 29 49-79 33-61 (204)
466 cd03223 ABCD_peroxisomal_ALDP 89.9 0.32 6.9E-06 48.3 3.8 28 49-78 29-56 (166)
467 cd03247 ABCC_cytochrome_bd The 89.9 0.29 6.3E-06 49.0 3.6 28 49-78 30-57 (178)
468 PRK13652 cbiO cobalt transport 89.8 0.27 5.8E-06 53.1 3.4 28 49-78 32-59 (277)
469 TIGR03410 urea_trans_UrtE urea 89.8 0.31 6.7E-06 50.8 3.8 23 49-71 28-50 (230)
470 cd03251 ABCC_MsbA MsbA is an e 89.8 0.28 6.1E-06 51.2 3.5 23 49-71 30-52 (234)
471 TIGR00968 3a0106s01 sulfate AB 89.8 0.3 6.4E-06 51.3 3.7 29 49-79 28-56 (237)
472 cd03295 ABC_OpuCA_Osmoprotecti 89.8 0.29 6.3E-06 51.5 3.6 28 49-78 29-56 (242)
473 PF13207 AAA_17: AAA domain; P 89.8 0.27 6E-06 45.4 3.1 22 49-70 1-22 (121)
474 PRK10247 putative ABC transpor 89.8 0.29 6.2E-06 51.0 3.5 23 49-71 35-57 (225)
475 TIGR01184 ntrCD nitrate transp 89.7 0.3 6.5E-06 51.1 3.6 23 49-71 13-35 (230)
476 cd03228 ABCC_MRP_Like The MRP 89.7 0.31 6.8E-06 48.4 3.6 29 49-79 30-58 (171)
477 cd03233 ABC_PDR_domain1 The pl 89.7 0.25 5.4E-06 50.6 2.9 23 49-71 35-57 (202)
478 PRK13538 cytochrome c biogenes 89.7 0.31 6.7E-06 49.9 3.6 23 49-71 29-51 (204)
479 cd03300 ABC_PotA_N PotA is an 89.7 0.3 6.6E-06 51.0 3.6 28 49-78 28-55 (232)
480 PF02263 GBP: Guanylate-bindin 89.6 0.7 1.5E-05 49.5 6.4 24 47-70 21-44 (260)
481 PRK13546 teichoic acids export 89.6 0.3 6.5E-06 52.4 3.6 29 49-79 52-80 (264)
482 PRK13633 cobalt transporter AT 89.6 0.29 6.2E-06 52.9 3.5 28 49-78 38-65 (280)
483 PF13191 AAA_16: AAA ATPase do 89.6 0.36 7.9E-06 47.8 4.0 40 28-70 8-47 (185)
484 TIGR02788 VirB11 P-type DNA tr 89.6 0.28 6E-06 53.9 3.4 28 49-78 146-173 (308)
485 COG1126 GlnQ ABC-type polar am 89.6 0.34 7.4E-06 50.1 3.7 23 49-71 30-52 (240)
486 TIGR01189 ccmA heme ABC export 89.5 0.31 6.6E-06 49.7 3.4 23 49-71 28-50 (198)
487 PRK10253 iron-enterobactin tra 89.4 0.32 7E-06 52.0 3.7 28 49-78 35-62 (265)
488 PRK10575 iron-hydroxamate tran 89.4 0.33 7.2E-06 51.9 3.7 23 49-71 39-61 (265)
489 PRK11264 putative amino-acid A 89.4 0.31 6.7E-06 51.5 3.5 23 49-71 31-53 (250)
490 TIGR03411 urea_trans_UrtD urea 89.4 0.32 7E-06 51.1 3.6 23 49-71 30-52 (242)
491 cd03244 ABCC_MRP_domain2 Domai 89.4 0.32 7E-06 50.3 3.5 23 49-71 32-54 (221)
492 TIGR03771 anch_rpt_ABC anchore 89.4 0.32 6.9E-06 50.6 3.5 23 49-71 8-30 (223)
493 cd03294 ABC_Pro_Gly_Bertaine T 89.4 0.31 6.7E-06 52.3 3.5 23 49-71 52-74 (269)
494 PRK13900 type IV secretion sys 89.4 0.27 5.8E-06 54.6 3.0 27 49-77 162-188 (332)
495 cd02019 NK Nucleoside/nucleoti 89.3 0.33 7E-06 40.9 2.9 21 50-70 2-22 (69)
496 PRK10078 ribose 1,5-bisphospho 89.3 0.29 6.2E-06 49.5 3.0 23 49-71 4-26 (186)
497 COG3839 MalK ABC-type sugar tr 89.3 0.33 7.2E-06 53.8 3.7 23 49-71 31-53 (338)
498 cd03296 ABC_CysA_sulfate_impor 89.3 0.32 6.8E-06 51.1 3.4 23 49-71 30-52 (239)
499 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 89.3 0.31 6.8E-06 50.8 3.4 23 49-71 50-72 (224)
500 cd03238 ABC_UvrA The excision 89.3 0.3 6.4E-06 49.2 3.0 21 49-69 23-43 (176)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=6.5e-104 Score=919.04 Aligned_cols=621 Identities=40% Similarity=0.587 Sum_probs=553.5
Q ss_pred CCccchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCc-ccc
Q 003736 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-EEY 98 (799)
Q Consensus 20 ~l~~~l~~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-~~~ 98 (799)
.+++.+++++|++||.|..+|.+..+++|+|||||+||+||||+||+|+|++|||||.|+|||||++++|.+.... .+|
T Consensus 2 ~~~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~ 81 (657)
T KOG0446|consen 2 GLMRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEE 81 (657)
T ss_pred chhhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccc
Confidence 3678899999999999999997788999999999999999999999999999999999999999999999988653 789
Q ss_pred cccc-cCCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------
Q 003736 99 GEFL-HLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-------------- 163 (799)
Q Consensus 99 ~~~~-~~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~-------------- 163 (799)
++|. |.+++.++||++++++|+.+|++.+|.++|+|+.+|.|+|++|++++||||||||++++|+
T Consensus 82 ~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~m 161 (657)
T KOG0446|consen 82 ASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSM 161 (657)
T ss_pred hhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999986
Q ss_pred --------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCCh
Q 003736 164 --------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQ 229 (799)
Q Consensus 164 --------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq 229 (799)
|++||+|+++++|+++|+++||.|.|||||+||+|+|++|+++..+|.|..+++++||++|+||+|
T Consensus 162 i~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q 241 (657)
T KOG0446|consen 162 IEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVVNRSQ 241 (657)
T ss_pred HHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeeeccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhhccCCCcccccccCCChhHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCCCCC
Q 003736 230 EDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITE 309 (799)
Q Consensus 230 ~d~~~~~si~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~ 309 (799)
+++..++++.+++..|..||..||.|..+.+++|+++|.+.|+..|..||+.++|.++..|+.++.+++.+|..||. ..
T Consensus 242 ~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~-~~ 320 (657)
T KOG0446|consen 242 SIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA-VD 320 (657)
T ss_pred hhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc-cC
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999997 33
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhhcCCccccccccccccchhhHHhHHHHHHhhhccCCCCCCchHHHHHHHHhhcCCCC
Q 003736 310 SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKS 389 (799)
Q Consensus 310 ~~~~~~~~Ll~~i~~f~~~~~~~i~G~~~~~~~~~l~gg~ri~~~f~~~F~~~l~~~~~~~~~~~~dI~~~i~~~~G~~~ 389 (799)
........++.++..|+..|...++|..+...+.+++||+||+|+|+..|...+.+++|++.+...+|++++.|++|+++
T Consensus 321 ~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~ 400 (657)
T KOG0446|consen 321 VDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRP 400 (657)
T ss_pred CccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCc
Confidence 34456788999999999999999999987654789999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhh-ccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003736 390 ALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVN-ELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHI 468 (799)
Q Consensus 390 ~~fv~~~~Fe~Lvk~qi~~l~~Pal~c~~~V~~el~~i~~~~~~~-~~~rfp~L~~~i~~~v~~~L~~~~~~a~~~I~~l 468 (799)
++|+|+.+||.+|++||+.+++|+++|++.|++++.+++++|... +|.|||.|++++.+++.+++++++.+++++|.++
T Consensus 401 ~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~ 480 (657)
T KOG0446|consen 401 SLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGLDETKKAVKNL 480 (657)
T ss_pred cccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876 8999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCccchH-HHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCcc
Q 003736 469 IEMEMDYINTSHPNFIGGSK-AVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPT 547 (799)
Q Consensus 469 i~~E~~yInT~hp~f~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (799)
|+||.+||||.||||+++.+ |+...... +.+ .. ++.. +.
T Consensus 481 i~~e~~yinT~h~df~~~~~~al~~~~~~--~~~-------~~-------------------------~~~~-~~----- 520 (657)
T KOG0446|consen 481 IDLEQSYLNTDHPDFRSLTDSALSSVTSP--SIA-------AM-------------------------KLIS-AQ----- 520 (657)
T ss_pred HHHHHHHhcCcChhhhhhHHHHHHHhhcc--ccc-------cc-------------------------cccc-cc-----
Confidence 99999999999999999875 43221110 000 00 0000 00
Q ss_pred hhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhhHhhhccCCCCccCCCCCCCchhHHHHHH
Q 003736 548 VEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIA 627 (799)
Q Consensus 548 ~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~ei~ 627 (799)
. .. ......++....+.+. ...+.+...+..+.....+++++..+++
T Consensus 521 ----~-~~--~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (657)
T KOG0446|consen 521 ----L-LK--EELGECNSALKAIKNA--------------------------VGSIRLDPSDIVLSRALVLKKRECKETE 567 (657)
T ss_pred ----c-cc--cccccccchhhhhcch--------------------------hhhhhhcccchhhhhhhhcchhhhHHHH
Confidence 0 00 0000000000001000 0001222333444444567788889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 003736 628 VTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYR-ENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAF 706 (799)
Q Consensus 628 ~ir~lv~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLv~~LY~-~~~~~eLL~E~~~ia~kR~~l~~~l~~L~qA~ 706 (799)
.|+.++.|||+||+|+|+|+|||+|||||||.+++.||++|+++||+ ++.+++||+|+|.++++|+.|++|+++|++|.
T Consensus 568 ~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~ 647 (657)
T KOG0446|consen 568 EISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDEQLESLLKEDPRIKRRRELQQKRLLALQKAL 647 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHccccc
Q 003736 707 RTLDELPL 714 (799)
Q Consensus 707 ~iL~ev~~ 714 (799)
.+|..+..
T Consensus 648 ~ii~~~~~ 655 (657)
T KOG0446|consen 648 SILATVAQ 655 (657)
T ss_pred HHHHHHhc
Confidence 99988765
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.6e-56 Score=484.47 Aligned_cols=287 Identities=46% Similarity=0.777 Sum_probs=254.1
Q ss_pred HHHhhhccccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCcccccccCCChhHHHHHHHHHHHHHHHhhccC
Q 003736 206 ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPG 285 (799)
Q Consensus 206 ~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~ 285 (799)
+.++|.|+.+||+|||+||+||+|+|++.+.++.++++.|+.||++||+|+...+++||++|+.+|+++|.+||++.||.
T Consensus 1 ~~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~ 80 (295)
T PF01031_consen 1 AMDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPS 80 (295)
T ss_dssp SHHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcH
Confidence 35799999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHHhhhcCCcc-ccccccccccchhhHHhHHHHHHhh
Q 003736 286 LKSRISSALVSVAKEHASYGEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNE-EMSTSELSGGARIHYIFQSIFVKSL 363 (799)
Q Consensus 286 l~~~i~~~l~~~~~eL~~lg~~~~-~~~~~~~~Ll~~i~~f~~~~~~~i~G~~~-~~~~~~l~gg~ri~~~f~~~F~~~l 363 (799)
|+.+|++.|.+++.+|+.||++++ +..+++.+|++++++|++.++++++|.|. +....++.||+||+++|++.|...+
T Consensus 81 l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~ 160 (295)
T PF01031_consen 81 LKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFL 160 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhh
Confidence 999999999999999999999998 77889999999999999999999999998 4678899999999999999999999
Q ss_pred hccCCCCCCchHHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhccccchHHH
Q 003736 364 EEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLR 443 (799)
Q Consensus 364 ~~~~~~~~~~~~dI~~~i~~~~G~~~~~fv~~~~Fe~Lvk~qi~~l~~Pal~c~~~V~~el~~i~~~~~~~~~~rfp~L~ 443 (799)
..+++++.+++++|+++|++++|+++|+|+|+.+|+.||++||++|++||++|++.|+++|.+++.+|+.++|.+||.|+
T Consensus 161 ~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~ 240 (295)
T PF01031_consen 161 EKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLK 240 (295)
T ss_dssp HHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHH
T ss_pred hhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccCCCCCCCccchHHHHH
Q 003736 444 KRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEI 492 (799)
Q Consensus 444 ~~i~~~v~~~L~~~~~~a~~~I~~li~~E~~yInT~hp~f~~~~~a~~~ 492 (799)
+++.+++.++++++.++|+++|++||+||++||||+||||+++..++..
T Consensus 241 ~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~~~ 289 (295)
T PF01031_consen 241 EAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAIRQ 289 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998776644
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1e-43 Score=370.13 Aligned_cols=211 Identities=64% Similarity=1.019 Sum_probs=199.1
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCccccccc
Q 003736 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (799)
Q Consensus 22 ~~~l~~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~ 101 (799)
++.|++++|+|++++.++|++..+++|+|||||+||+|||||||+|+|..|+|++.|.|||||+++++++. ...|.++
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~~~~~~~ 78 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--STEYAEF 78 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--CCcceEE
Confidence 46899999999999878999989999999999999999999999999999999999999999999999885 3579999
Q ss_pred ccCCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC-----e-------------
Q 003736 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP-----V------------- 163 (799)
Q Consensus 102 ~~~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~-----~------------- 163 (799)
.+.+++.+.|+++++++|+.++++..|.+++||+++|+|+|++|++|+|+||||||+++.+ .
T Consensus 79 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~y 158 (240)
T smart00053 79 LHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQF 158 (240)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998541 1
Q ss_pred ----------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 164 ----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 164 ----------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
|++|+.|+++++++++++.++|.+.|||||+||+|.+++++++.++++|+.++|+||||+|+||+|+|++
T Consensus 159 i~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr~~~d~~ 238 (240)
T smart00053 159 ISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIE 238 (240)
T ss_pred HhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECCChHHhh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q 003736 234 F 234 (799)
Q Consensus 234 ~ 234 (799)
+
T Consensus 239 ~ 239 (240)
T smart00053 239 G 239 (240)
T ss_pred c
Confidence 4
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=275.34 Aligned_cols=257 Identities=27% Similarity=0.455 Sum_probs=202.6
Q ss_pred CccchHHHHHHHHHHHHHhCCC--CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCC-ccccceEEEEeccCCCccc
Q 003736 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEE 97 (799)
Q Consensus 21 l~~~l~~~i~kL~d~~~~~g~~--~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~ 97 (799)
|..+||+++...-|+++..... ..-.||+|||||+|||||+||||.|....++|||+| ..||.|+.++|...+..
T Consensus 280 lKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyH-- 357 (980)
T KOG0447|consen 280 LKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHH-- 357 (980)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcch--
Confidence 5678999999999998765432 334899999999999999999999999999999998 58999999999877641
Q ss_pred ccccccCC----CCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe----------
Q 003736 98 YGEFLHLP----GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV---------- 163 (799)
Q Consensus 98 ~~~~~~~~----g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~---------- 163 (799)
.+.|.... -.+..|+.++|++++-.+......++.+|.++|.+.+.||+++.++||||||+++.-+
T Consensus 358 VAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~ 437 (980)
T KOG0447|consen 358 VALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKET 437 (980)
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHH
Confidence 11121110 1245688899999999888777788999999999999999999999999999997521
Q ss_pred ------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCc----hhHHHhhhccccccc-cc
Q 003736 164 ------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG----TDARNLLLGKVIPLR-LG 220 (799)
Q Consensus 164 ------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g----~~~~~~l~~~~~~l~-lg 220 (799)
+-+.+.|..-+....+.-.+||.|.|||+|+||.|+.... ....++|.|+.+|++ ||
T Consensus 438 I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALG 517 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALG 517 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcc
Confidence 3345566666666789999999999999999999998652 235689999999995 89
Q ss_pred eEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCcccc--c-ccCCChhHHHHHHHHHHHHHHHhh
Q 003736 221 YVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNG--L-ADRCGVPQLAKKLNQILVQHIKAI 282 (799)
Q Consensus 221 y~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~~~~--l-~~~~Gi~~L~~~L~~~L~~~I~~~ 282 (799)
|++|+.-... ...||++.++.|+.||.+...+.. + ++.+.+.+|.-..++.++..++..
T Consensus 518 YfaVVTGrGn---ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVRes 579 (980)
T KOG0447|consen 518 YFAVVTGKGN---SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRES 579 (980)
T ss_pred eeEEEecCCC---cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHH
Confidence 9999873321 224688888999999998766532 2 356777888878888777765543
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.94 E-value=6.1e-27 Score=209.09 Aligned_cols=91 Identities=38% Similarity=0.666 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 003736 622 ENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRV 701 (799)
Q Consensus 622 e~~ei~~ir~lv~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLv~~LY~~~~~~eLL~E~~~ia~kR~~l~~~l~~ 701 (799)
|..+++.|+.|+.|||+||+|+|+|+|||+|||||||.+++.||++|+++||+++.+++||+|||+|++||+.|++++++
T Consensus 2 e~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 2 EDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q 003736 702 LQQAFRTLDEL 712 (799)
Q Consensus 702 L~qA~~iL~ev 712 (799)
|++|.++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 6
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.89 E-value=7.8e-23 Score=183.05 Aligned_cols=92 Identities=43% Similarity=0.706 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 003736 621 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLR 700 (799)
Q Consensus 621 ~e~~ei~~ir~lv~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLv~~LY~~~~~~eLL~E~~~ia~kR~~l~~~l~ 700 (799)
||..+++.|+.+++|||+||+|||+|+|||+||||||+.+++.|+.+|+..||.++.+++||+|||+|++||+.|+++++
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAEKREELKKKLE 80 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 003736 701 VLQQAFRTLDEL 712 (799)
Q Consensus 701 ~L~qA~~iL~ev 712 (799)
+|++|.++|++|
T Consensus 81 ~L~~A~~~L~~~ 92 (92)
T PF02212_consen 81 RLKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 999999999875
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.81 E-value=1.5e-19 Score=178.83 Aligned_cols=148 Identities=36% Similarity=0.479 Sum_probs=119.8
Q ss_pred EEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCccc--ccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEE--YGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 50 IvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~--~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
|+|+|.+|||||||+|+|+|.+++|++.+.||++|+++.......... +..........+.++.++++.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999999999876654221 111111113456789999999988877766
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe------------------EecCCCCCChHHHHHHHHHcCCCCCc
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV------------------VTPANSDLANSDALQIAGIADPDGYR 189 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~------------------V~~a~~dl~~~dal~la~~~dp~g~r 189 (799)
+....++..++.+....+...+++||||||+..... |++++.++..++...+.+.+++...|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 666778888999999999999999999999976311 88999999999999999999999999
Q ss_pred EEEEeecC
Q 003736 190 TIGIITKL 197 (799)
Q Consensus 190 tIgVlTK~ 197 (799)
+|+|+||+
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999995
No 8
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.49 E-value=8.7e-12 Score=146.02 Aligned_cols=509 Identities=26% Similarity=0.305 Sum_probs=345.5
Q ss_pred cccccccCCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe-------------
Q 003736 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV------------- 163 (799)
Q Consensus 97 ~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~------------- 163 (799)
+|..|.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 3556667666677899999999999988888888999999999999999999999999999887654
Q ss_pred ---------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCC
Q 003736 164 ---------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 228 (799)
Q Consensus 164 ---------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrs 228 (799)
.+.++.+..+.+....++..++ +.|+.+.++.++..... +..|++.+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 4445555555555555655554 67777777665433211 677888899999
Q ss_pred hhhhhhhhhHHHHHHHHHhhccCCCcccccccCCChhHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCCCC
Q 003736 229 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT 308 (799)
Q Consensus 229 q~d~~~~~si~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~eL~~lg~~~ 308 (799)
+.++....+...+...+..+|..++.|.+....++...+...+...+..|+....+............ .++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 99988888888788899999999999998888899999999999999999999888766555443332 12111
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhhhcCCccccccccccccchhhHHhHHHHHHhhhccCCCCCCchHHHHHHHHhhcCCC
Q 003736 309 ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPK 388 (799)
Q Consensus 309 ~~~~~~~~~Ll~~i~~f~~~~~~~i~G~~~~~~~~~l~gg~ri~~~f~~~F~~~l~~~~~~~~~~~~dI~~~i~~~~G~~ 388 (799)
.++.....|...+.. +.+|.|++.. ...+++.+.+.+..+.....+..|.+
T Consensus 221 --------~~~~~~~~~~~~~~~-------------~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~ 271 (546)
T COG0699 221 --------EVLAVIQTLLKRLSE-------------LVRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGER 271 (546)
T ss_pred --------HHHHHHHHHHHHHHH-------------Hhccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCC
Confidence 344445555555542 2344555544 12233344445556667677777887
Q ss_pred CCCCCCChHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhh-hhccccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003736 389 SALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCL-VNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGH 467 (799)
Q Consensus 389 ~~~fv~~~~Fe~Lvk~qi~~l~~Pal~c~~~V~~el~~i~~~~~-~~~~~rfp~L~~~i~~~v~~~L~~~~~~a~~~I~~ 467 (799)
...|.....|..++..++..+..+..+|+..+.+++.++..... ......|+.+...+...+.++........+..+..
T Consensus 272 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (546)
T COG0699 272 PSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLA 351 (546)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 77888999999999999999999998898889999998854433 34578899999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCccchHHHHHHHHhhhhcCC-CC--CcccCCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCC
Q 003736 468 IIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKV-PL--PITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGV 544 (799)
Q Consensus 468 li~~E~~yInT~hp~f~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (799)
.++.+..|++|.||+|+....+........-.... .. ......+- .. ....+ ........... ..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~----~~~~~~~~~~~----~~-- 419 (546)
T COG0699 352 IIDIEERYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLREL-SD-MGLNS----LLSNNLEEHLL----GS-- 419 (546)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccch-hh-cccch----hHHHHHHHHhh----cc--
Confidence 99999999999999999876665544332111000 00 00000000 00 00000 00000000000 00
Q ss_pred CcchhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhhHhhhccCCCCccCCCCCCCchhHHH
Q 003736 545 RPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENV 624 (799)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~ 624 (799)
+.. ...+++ .+... .. ... .......... . .......+...
T Consensus 420 ----------~~~--~~~~~~---~~~~~----~~-~~~-------~~~~~~~~~~---~---------~~~~~~~~~~~ 460 (546)
T COG0699 420 ----------DFS--LYKFLN---EFLEL----KK-LDA-------LLATLGEALR---R---------LTGLLPERKTL 460 (546)
T ss_pred ----------hhh--HHHHHH---HHhhh----cc-chh-------hhccchHHHH---H---------hhcccchhhhh
Confidence 000 000000 00000 00 000 0000000000 0 00111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003736 625 EIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQ 704 (799)
Q Consensus 625 ei~~ir~lv~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLv~~LY~~~~~~eLL~E~~~ia~kR~~l~~~l~~L~q 704 (799)
+...++.++.+| .++...+.|.|+++++.++.+..+...+......+|.+...+++..+.+.+.++|..+.+.++.+.+
T Consensus 461 ~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (546)
T COG0699 461 EKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDELLRTAEEILELRLLLEQFLEALKL 539 (546)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334558999999 9999999999999999999888888888888889999999999999999999999999999999998
Q ss_pred HHH
Q 003736 705 AFR 707 (799)
Q Consensus 705 A~~ 707 (799)
+..
T Consensus 540 ~~~ 542 (546)
T COG0699 540 AAR 542 (546)
T ss_pred HHH
Confidence 865
No 9
>PRK09866 hypothetical protein; Provisional
Probab=99.39 E-value=9.8e-11 Score=134.56 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEecc
Q 003736 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQ 91 (799)
Q Consensus 27 ~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~ 91 (799)
.-|.+|+.-+..+-... |.++|||..|+|||||+|+|+|.+++|.+...+|.+|+.+....
T Consensus 53 ~ri~~L~~~L~Kv~~~~----~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~p 113 (741)
T PRK09866 53 ERHAMLNNELRKISRLE----MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTP 113 (741)
T ss_pred HHHHHHHHHHHHHhccc----eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecC
Confidence 34444444444442222 99999999999999999999999999999999999999776543
No 10
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=5e-12 Score=126.72 Aligned_cols=102 Identities=26% Similarity=0.345 Sum_probs=74.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCcc--ccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHh
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC--TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~--Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~ 122 (799)
-++|.||++|..|+|||||||+|+|..-|-|-+.++ |+.+...
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff----------------------------------- 66 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF----------------------------------- 66 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE-----------------------------------
Confidence 388999999999999999999999986444443322 2221110
Q ss_pred hhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe---------------------------EecCCCCCChHH
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV---------------------------VTPANSDLANSD 175 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~---------------------------V~~a~~dl~~~d 175 (799)
++. ..+.|||+||+.-..+ ++++...+...|
T Consensus 67 ------------------~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D 124 (200)
T COG0218 67 ------------------EVD----DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD 124 (200)
T ss_pred ------------------Eec----CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH
Confidence 110 1378999999885432 788888888777
Q ss_pred HHHHHHHcCCCCCcEEEEeecCCCCCCch
Q 003736 176 ALQIAGIADPDGYRTIGIITKLDIMDRGT 204 (799)
Q Consensus 176 al~la~~~dp~g~rtIgVlTK~Dl~~~g~ 204 (799)
.+|...+...+.+++.|+||+|.+.++.
T Consensus 125 -~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 125 -REMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred -HHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 4777777778899999999999998653
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.34 E-value=4e-11 Score=133.32 Aligned_cols=128 Identities=27% Similarity=0.392 Sum_probs=88.0
Q ss_pred CccchHHHHHHHHHHHHHhCCCCCC-CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCccccc
Q 003736 21 LGGSVIPLVNKLQDIFAQLGSQSTI-ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG 99 (799)
Q Consensus 21 l~~~l~~~i~kL~d~~~~~g~~~~i-~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~ 99 (799)
+...+-.+.++|.++++.......+ +=-.||++|.+|+|||||||||+|++ +.++..+.+||++-. -
T Consensus 190 i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d-----------~AIVTdI~GTTRDvi-e 257 (454)
T COG0486 190 IREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRD-----------RAIVTDIAGTTRDVI-E 257 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCC-----------ceEecCCCCCccceE-E
Confidence 3345556666666666654443333 33489999999999999999999998 555555557776321 1
Q ss_pred ccccCCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe----------------
Q 003736 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV---------------- 163 (799)
Q Consensus 100 ~~~~~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~---------------- 163 (799)
+.++ |.| ..+.|+||.|+.....
T Consensus 258 e~i~--------------------------------------i~G---~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 258 EDIN--------------------------------------LNG---IPVRLVDTAGIRETDDVVERIGIERAKKAIEE 296 (454)
T ss_pred EEEE--------------------------------------ECC---EEEEEEecCCcccCccHHHHHHHHHHHHHHHh
Confidence 1112 212 2789999999997543
Q ss_pred ------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCc
Q 003736 164 ------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 203 (799)
Q Consensus 164 ------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g 203 (799)
|++++..+...|- .+.. .-+.++++|.|+||.|+..+.
T Consensus 297 ADlvL~v~D~~~~~~~~d~-~~~~-~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDL-ALIE-LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred CCEEEEEEeCCCCCchhhH-HHHH-hcccCCCEEEEEechhccccc
Confidence 8899887766663 2333 456789999999999999753
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.33 E-value=1.5e-11 Score=136.34 Aligned_cols=176 Identities=20% Similarity=0.356 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHHHHHhCCC-CC---CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccc
Q 003736 23 GSVIPLVNKLQDIFAQLGSQ-ST---IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEY 98 (799)
Q Consensus 23 ~~l~~~i~kL~d~~~~~g~~-~~---i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 98 (799)
..+-++++.+...+. .... .. .+.-+||+||.+|+|||||+|+|+|.+ +.++..+.+++++...
T Consensus 151 ~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgee-----------R~Iv~~~aGTTRD~I~ 218 (444)
T COG1160 151 RGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEE-----------RVIVSDIAGTTRDSID 218 (444)
T ss_pred cCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCc-----------eEEecCCCCcccccee
Confidence 445567777766542 1111 11 245699999999999999999999998 4444444455543333
Q ss_pred cccccCCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe---------------
Q 003736 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------- 163 (799)
Q Consensus 99 ~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------- 163 (799)
..|.+ +.-.++||||.|+.+...
T Consensus 219 ~~~e~------------------------------------------~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 219 IEFER------------------------------------------DGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred eeEEE------------------------------------------CCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 22221 012689999999997532
Q ss_pred ----------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 164 ----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 164 ----------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
|++|...+..|| ++++..+...|...|.|+||||++++.+...+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~------------------------- 310 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQD-LRIAGLIEEAGRGIVIVVNKWDLVEEDEATME------------------------- 310 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHH-HHHHHHHHHcCCCeEEEEEccccCCchhhHHH-------------------------
Confidence 899999999999 67888888899999999999999986322111
Q ss_pred hhhhHHHHHHHHHhhccCCCc-ccccccCCChhHHHHHHHHHHHHHHHh
Q 003736 234 FNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQHIKA 281 (799)
Q Consensus 234 ~~~si~ea~~~E~~FF~~~~~-~~~l~~~~Gi~~L~~~L~~~L~~~I~~ 281 (799)
.+++-+.....|....|. +.+...+.|+..|.+.+.++...+-++
T Consensus 311 ---~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 311 ---EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred ---HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence 112223334444444444 356667888888888777776555443
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.29 E-value=2.8e-11 Score=127.67 Aligned_cols=102 Identities=30% Similarity=0.424 Sum_probs=71.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhcC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g 128 (799)
-|++||.+|+|||||+|+|+|..+. ++++.| +||+....+.+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~Kis-----IvS~k~------QTTR~~I~GI~--------------------------- 49 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKIS-----IVSPKP------QTTRNRIRGIV--------------------------- 49 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceE-----eecCCc------chhhhheeEEE---------------------------
Confidence 5899999999999999999999873 333333 44443222211
Q ss_pred CCCCccccceEEEEecCCccCEEEEeCCCCCCCCe----------------------EecCCCCCChHHHHHHHHHcCCC
Q 003736 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV----------------------VTPANSDLANSDALQIAGIADPD 186 (799)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~----------------------V~~a~~dl~~~dal~la~~~dp~ 186 (799)
..+-.+++||||||+.+..+ |+++...+..-|.. ++..+...
T Consensus 50 ---------------t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~-il~~lk~~ 113 (298)
T COG1159 50 ---------------TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEF-ILEQLKKT 113 (298)
T ss_pred ---------------EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHH-HHHHHhhc
Confidence 11123799999999998643 88988888776532 33344335
Q ss_pred CCcEEEEeecCCCCCCch
Q 003736 187 GYRTIGIITKLDIMDRGT 204 (799)
Q Consensus 187 g~rtIgVlTK~Dl~~~g~ 204 (799)
..+.|.++||+|++.+.+
T Consensus 114 ~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 114 KTPVILVVNKIDKVKPKT 131 (298)
T ss_pred CCCeEEEEEccccCCcHH
Confidence 679999999999997654
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=129.52 Aligned_cols=100 Identities=26% Similarity=0.389 Sum_probs=78.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
|.||+||.+|+|||||+|+|+|.. ..++-...++|++..|+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-----------~AIV~D~pGvTRDr~y~~~~------------------------- 47 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-----------IAIVSDTPGVTRDRIYGDAE------------------------- 47 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-----------eeEeecCCCCccCCccceeE-------------------------
Confidence 899999999999999999999997 45555555666655554221
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCC-e----------------------EecCCCCCChHHHHHHHHHcC
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP-V----------------------VTPANSDLANSDALQIAGIAD 184 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~-~----------------------V~~a~~dl~~~dal~la~~~d 184 (799)
+.+- .+.||||+|+.... . |+++...++..| ..+|+.+.
T Consensus 48 --------------~~~~---~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr 109 (444)
T COG1160 48 --------------WLGR---EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPAD-EEIAKILR 109 (444)
T ss_pred --------------EcCc---eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHH
Confidence 1111 58999999999643 1 899999999888 56788777
Q ss_pred CCCCcEEEEeecCCCCC
Q 003736 185 PDGYRTIGIITKLDIMD 201 (799)
Q Consensus 185 p~g~rtIgVlTK~Dl~~ 201 (799)
+.++++|+|+||+|...
T Consensus 110 ~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 110 RSKKPVILVVNKIDNLK 126 (444)
T ss_pred hcCCCEEEEEEcccCch
Confidence 77899999999999973
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.19 E-value=2.7e-11 Score=118.67 Aligned_cols=97 Identities=31% Similarity=0.457 Sum_probs=61.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhcC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g 128 (799)
+|++||.+|+|||||+|+|+|... .+++ +| +++.....+.+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n-----~p------G~Tv~~~~g~~--------------------------- 42 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGN-----WP------GTTVEKKEGIF--------------------------- 42 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEE-----ST------TSSSEEEEEEE---------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecC-----CC------CCCeeeeeEEE---------------------------
Confidence 699999999999999999999973 2222 22 33221111111
Q ss_pred CCCCccccceEEEEecCCccCEEEEeCCCCCCCCe----------------------EecCCCCCChHHHHHHHHHcCCC
Q 003736 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV----------------------VTPANSDLANSDALQIAGIADPD 186 (799)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~----------------------V~~a~~dl~~~dal~la~~~dp~ 186 (799)
++ . -..+.||||||+++... |++|.. ...-+.+..++-..
T Consensus 43 ------------~~--~-~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~ 104 (156)
T PF02421_consen 43 ------------KL--G-DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLEL 104 (156)
T ss_dssp ------------EE--T-TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHT
T ss_pred ------------Ee--c-CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHc
Confidence 11 1 13789999999987532 666654 23336677777778
Q ss_pred CCcEEEEeecCCCCCC
Q 003736 187 GYRTIGIITKLDIMDR 202 (799)
Q Consensus 187 g~rtIgVlTK~Dl~~~ 202 (799)
|.|+|.|+||+|.+.+
T Consensus 105 g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 105 GIPVVVVLNKMDEAER 120 (156)
T ss_dssp TSSEEEEEETHHHHHH
T ss_pred CCCEEEEEeCHHHHHH
Confidence 9999999999999854
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.15 E-value=4.2e-10 Score=124.96 Aligned_cols=125 Identities=22% Similarity=0.328 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHHHHh--CCC--CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCccccc
Q 003736 24 SVIPLVNKLQDIFAQL--GSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG 99 (799)
Q Consensus 24 ~l~~~i~kL~d~~~~~--g~~--~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~ 99 (799)
.+-.+..+|.++.+.. |.. ..-..|+|++||.+|+|||||+|+|+|.++...+.-.+|+-|+.-
T Consensus 162 ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~------------ 229 (351)
T TIGR03156 162 RIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR------------ 229 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE------------
Confidence 3334445555544432 221 124679999999999999999999999875433333445444221
Q ss_pred ccccCCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCC-Ce---------------
Q 003736 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-PV--------------- 163 (799)
Q Consensus 100 ~~~~~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-~~--------------- 163 (799)
.+.-|+...+.|+||||+.+. |.
T Consensus 230 -----------------------------------------~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ 268 (351)
T TIGR03156 230 -----------------------------------------RLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVRE 268 (351)
T ss_pred -----------------------------------------EEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHh
Confidence 111122236899999999542 21
Q ss_pred ------EecCCCCCChHHH---HHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 164 ------VTPANSDLANSDA---LQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 164 ------V~~a~~dl~~~da---l~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
|++++......+. ..+.+.+.-.+.++|.|+||+|+.+
T Consensus 269 ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 269 ADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 7777654433221 3556666555789999999999975
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.15 E-value=7.5e-10 Score=118.80 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
.|+|||.+|+|||||+|+|+|..+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~ 26 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS 26 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe
Confidence 5899999999999999999999753
No 18
>COG2262 HflX GTPases [General function prediction only]
Probab=99.12 E-value=9.3e-10 Score=120.53 Aligned_cols=147 Identities=22% Similarity=0.276 Sum_probs=101.0
Q ss_pred CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHh
Q 003736 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (799)
Q Consensus 43 ~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~ 122 (799)
..-+.|+|++||..|||||||+|+|+|...+-.+.-.+|-.|+ +
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt-------t----------------------------- 231 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPT-------T----------------------------- 231 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCc-------e-----------------------------
Confidence 4579999999999999999999999999753233333333331 1
Q ss_pred hhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCC-Ce---------------------EecCCCCCChH---HHH
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-PV---------------------VTPANSDLANS---DAL 177 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-~~---------------------V~~a~~dl~~~---dal 177 (799)
-.+.-++.-.+.|.||-||++. |+ |++++.+.... ...
T Consensus 232 -----------------R~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~ 294 (411)
T COG2262 232 -----------------RRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVE 294 (411)
T ss_pred -----------------eEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHH
Confidence 1112222336899999999974 53 88887764322 225
Q ss_pred HHHHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCcccc
Q 003736 178 QIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNG 257 (799)
Q Consensus 178 ~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~~~~ 257 (799)
.+..+++-...|+|.|+||+|++.... ........+ ..++|.+
T Consensus 295 ~vL~el~~~~~p~i~v~NKiD~~~~~~------------------------------------~~~~~~~~~-~~~v~iS 337 (411)
T COG2262 295 DVLAEIGADEIPIILVLNKIDLLEDEE------------------------------------ILAELERGS-PNPVFIS 337 (411)
T ss_pred HHHHHcCCCCCCEEEEEecccccCchh------------------------------------hhhhhhhcC-CCeEEEE
Confidence 778888878899999999999986531 000111111 2467888
Q ss_pred cccCCChhHHHHHHHHHHHHHH
Q 003736 258 LADRCGVPQLAKKLNQILVQHI 279 (799)
Q Consensus 258 l~~~~Gi~~L~~~L~~~L~~~I 279 (799)
...+.|++.|+..|.+.+....
T Consensus 338 A~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 338 AKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred eccCcCHHHHHHHHHHHhhhcc
Confidence 8999999999999888876543
No 19
>PRK00089 era GTPase Era; Reviewed
Probab=99.11 E-value=1.6e-09 Score=117.42 Aligned_cols=98 Identities=30% Similarity=0.359 Sum_probs=63.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCcc-ccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
.|+|||.+|||||||+|+|+|.++..++..+. ||..+.
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~----------------------------------------- 45 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR----------------------------------------- 45 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-----------------------------------------
Confidence 59999999999999999999997643333222 211110
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe----------------------EecCCCCCChHHHHHHHHHcCC
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV----------------------VTPANSDLANSDALQIAGIADP 185 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~----------------------V~~a~~dl~~~dal~la~~~dp 185 (799)
.+.......++|+||||+..... |+++...+...+ ..+++.+..
T Consensus 46 -------------~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~-~~i~~~l~~ 111 (292)
T PRK00089 46 -------------GIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGD-EFILEKLKK 111 (292)
T ss_pred -------------EEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhH-HHHHHHHhh
Confidence 00001113789999999875321 677776555443 334444444
Q ss_pred CCCcEEEEeecCCCCC
Q 003736 186 DGYRTIGIITKLDIMD 201 (799)
Q Consensus 186 ~g~rtIgVlTK~Dl~~ 201 (799)
.+.++++|+||+|+..
T Consensus 112 ~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 112 VKTPVILVLNKIDLVK 127 (292)
T ss_pred cCCCEEEEEECCcCCC
Confidence 4689999999999984
No 20
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.10 E-value=1.7e-09 Score=119.35 Aligned_cols=197 Identities=22% Similarity=0.310 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCccccccccc
Q 003736 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLH 103 (799)
Q Consensus 24 ~l~~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~ 103 (799)
++-.+..++++.+..+. ...+ .|||+|+.++|||||+|||-|.. +-+.|....-.+ .++.
T Consensus 16 ~~~~~~s~i~~~l~~~~---~~~l-~IaV~G~sGsGKSSfINalrGl~--~~d~~aA~tGv~-----etT~--------- 75 (376)
T PF05049_consen 16 NLQEVVSKIREALKDID---NAPL-NIAVTGESGSGKSSFINALRGLG--HEDEGAAPTGVV-----ETTM--------- 75 (376)
T ss_dssp -HHHHHHHHHHHHHHHH---H--E-EEEEEESTTSSHHHHHHHHTT----TTSTTS--SSSH-----SCCT---------
T ss_pred CHHHHHHHHHHHHHHhh---cCce-EEEEECCCCCCHHHHHHHHhCCC--CCCcCcCCCCCC-----cCCC---------
Confidence 45567788888877663 2233 89999999999999999999874 222211000000 0000
Q ss_pred CCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe-----------------Eec
Q 003736 104 LPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-----------------VTP 166 (799)
Q Consensus 104 ~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~-----------------V~~ 166 (799)
-.-....|+.|+++|+||||+..... ++-
T Consensus 76 ----------------------------------~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii 121 (376)
T PF05049_consen 76 ----------------------------------EPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIII 121 (376)
T ss_dssp ----------------------------------S-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEE
T ss_pred ----------------------------------CCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEE
Confidence 01112347788999999999976432 444
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCch--------hHHHhhhccccccccceEEEEcCChhhhhhhhhH
Q 003736 167 ANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT--------DARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSI 238 (799)
Q Consensus 167 a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~--------~~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si 238 (799)
...-+...+ ..+|+++...|++..+|-||+|..-... +..++| +.|.+ ..
T Consensus 122 ~s~rf~~nd-v~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L-------------------~~IR~--~c 179 (376)
T PF05049_consen 122 SSERFTEND-VQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLL-------------------QEIRE--NC 179 (376)
T ss_dssp ESSS--HHH-HHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHH-------------------HHHHH--HH
T ss_pred eCCCCchhh-HHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHH-------------------HHHHH--HH
Confidence 455666666 5789999999999999999999621100 000111 01110 01
Q ss_pred HHHHHHHHhhccCCCcc--ccc-ccCCChhHHHHHHHHHHHHHHHh----hccChHHH-HHHHHHHHH
Q 003736 239 KDALVAEEKFFRSRPVY--NGL-ADRCGVPQLAKKLNQILVQHIKA----ILPGLKSR-ISSALVSVA 298 (799)
Q Consensus 239 ~ea~~~E~~FF~~~~~~--~~l-~~~~Gi~~L~~~L~~~L~~~I~~----~LP~l~~~-i~~~l~~~~ 298 (799)
.+.++ +.-....++| +.. ...+.++.|.+.|.+-|-.|-+. .||.+..+ |+++...++
T Consensus 180 ~~~L~--k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk 245 (376)
T PF05049_consen 180 LENLQ--KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLK 245 (376)
T ss_dssp HHHHH--CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHH
T ss_pred HHHHH--HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 11111 1111222334 233 25689999999999988887554 78887655 444444443
No 21
>PRK11058 GTPase HflX; Provisional
Probab=99.06 E-value=2.3e-09 Score=121.87 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=67.9
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
-.+|.|++||.+|+|||||+|+|+|.++...+.-.+|+-|+.-
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~------------------------------------- 237 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR------------------------------------- 237 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE-------------------------------------
Confidence 4679999999999999999999999875422222234333211
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCC-Ce---------------------EecCCCCCChHH---HHHH
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-PV---------------------VTPANSDLANSD---ALQI 179 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-~~---------------------V~~a~~dl~~~d---al~l 179 (799)
.+.+ ++...++|+||||+.+. |. |++++....... ..++
T Consensus 238 --------------~i~l--~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~i 301 (426)
T PRK11058 238 --------------RIDV--ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTV 301 (426)
T ss_pred --------------EEEe--CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHH
Confidence 1111 11225689999998653 21 777765433222 1355
Q ss_pred HHHcCCCCCcEEEEeecCCCCC
Q 003736 180 AGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 180 a~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
.+++...+.++|.|+||+|+.+
T Consensus 302 L~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 302 LEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHhccCCCCEEEEEEcccCCC
Confidence 6666656789999999999974
No 22
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.05 E-value=4.6e-09 Score=120.28 Aligned_cols=148 Identities=26% Similarity=0.361 Sum_probs=92.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCc-cccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
+..+|+|+|..++|||||+|+|+|.+...++... +|+-.+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~------------------------------------- 214 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDT------------------------------------- 214 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEE-------------------------------------
Confidence 4579999999999999999999998744443321 22222111
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC----------------------e---EecCCCCCChHHHHHH
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP----------------------V---VTPANSDLANSDALQI 179 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~----------------------~---V~~a~~dl~~~dal~l 179 (799)
.+.. +...++||||||+.+.. . |+++...+..++ .++
T Consensus 215 ----------------~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~-~~i 276 (435)
T PRK00093 215 ----------------PFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD-LRI 276 (435)
T ss_pred ----------------EEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHH
Confidence 1110 11257899999985421 0 788888888776 456
Q ss_pred HHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCcc-ccc
Q 003736 180 AGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVY-NGL 258 (799)
Q Consensus 180 a~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~~-~~l 258 (799)
++.+...+.++|+|+||+|+.+... .. .+.+.+.....+....|.+ .+.
T Consensus 277 ~~~~~~~~~~~ivv~NK~Dl~~~~~-~~-----------------------------~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 277 AGLALEAGRALVIVVNKWDLVDEKT-ME-----------------------------EFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHcCCcEEEEEECccCCCHHH-HH-----------------------------HHHHHHHHhcccccCCCEEEEeC
Confidence 6666667899999999999984321 00 0111222222222223333 556
Q ss_pred ccCCChhHHHHHHHHHHHHH
Q 003736 259 ADRCGVPQLAKKLNQILVQH 278 (799)
Q Consensus 259 ~~~~Gi~~L~~~L~~~L~~~ 278 (799)
..+.|+..|.+.+.+.+.++
T Consensus 327 ~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 67899998888887766544
No 23
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.03 E-value=4.5e-09 Score=106.31 Aligned_cols=30 Identities=37% Similarity=0.544 Sum_probs=26.5
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCC
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP 74 (799)
-.+|.|+|||.+++|||||+|+|+|..+.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~ 51 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLA 51 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc
Confidence 478999999999999999999999976433
No 24
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.03 E-value=3.5e-09 Score=103.76 Aligned_cols=102 Identities=25% Similarity=0.400 Sum_probs=64.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhh
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~ 126 (799)
.++|+++|..++|||||+|+|+|..+.+.+....|.... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~---------------------------- 41 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS------------I---------------------------- 41 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc------------e----------------------------
Confidence 468999999999999999999998643333221111100 0
Q ss_pred cCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC---------------------e----EecCCCCCChHHHHHHHH
Q 003736 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP---------------------V----VTPANSDLANSDALQIAG 181 (799)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~---------------------~----V~~a~~dl~~~dal~la~ 181 (799)
...+...+ .++++|||||+.... . |++++....... +.+.+
T Consensus 42 ----------~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~ 107 (174)
T cd01895 42 ----------DVPFEYDG---KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQD-LRIAG 107 (174)
T ss_pred ----------eeEEEECC---eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhH-HHHHH
Confidence 00111111 257899999975320 0 677776655443 44555
Q ss_pred HcCCCCCcEEEEeecCCCCCC
Q 003736 182 IADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 182 ~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
.+...+.+.++|+||+|+.+.
T Consensus 108 ~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 108 LILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhcCCCEEEEEeccccCCc
Confidence 555557899999999999865
No 25
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.01 E-value=5.4e-09 Score=120.88 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=89.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCC-CccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
..++|+|||.+|+|||||+|+|+|..+..++. ..+|+-+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~------------------------------------- 252 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS------------------------------------- 252 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE-------------------------------------
Confidence 46899999999999999999999987432222 1223222111
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC----------------------e---EecCCCCCChHHHHHH
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP----------------------V---VTPANSDLANSDALQI 179 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~----------------------~---V~~a~~dl~~~dal~l 179 (799)
.+++.+ ..+.|+||||+.+.. . |+++......++ +++
T Consensus 253 --------------~~~~~~---~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~-~~~ 314 (472)
T PRK03003 253 --------------LIELGG---KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQD-QRV 314 (472)
T ss_pred --------------EEEECC---EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHH-HHH
Confidence 111111 146799999974310 0 778877777666 456
Q ss_pred HHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCc-cccc
Q 003736 180 AGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGL 258 (799)
Q Consensus 180 a~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~-~~~l 258 (799)
+..+...+.++|+|+||+|+.+..... .+.+.......++...|. ..+.
T Consensus 315 ~~~~~~~~~piIiV~NK~Dl~~~~~~~------------------------------~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 315 LSMVIEAGRALVLAFNKWDLVDEDRRY------------------------------YLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHHHHHcCCCEEEEEECcccCChhHHH------------------------------HHHHHHHHhcccCCCCCEEEEEC
Confidence 666666789999999999998532100 011111111122222333 3566
Q ss_pred ccCCChhHHHHHHHHHHHH
Q 003736 259 ADRCGVPQLAKKLNQILVQ 277 (799)
Q Consensus 259 ~~~~Gi~~L~~~L~~~L~~ 277 (799)
..+.|+..|...+.+++..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 7889999988888776644
No 26
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.01 E-value=8.6e-09 Score=109.96 Aligned_cols=121 Identities=22% Similarity=0.349 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCC
Q 003736 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (799)
Q Consensus 28 ~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~ 107 (799)
.+++.++.++.+-. -+.++|+|+|.|.+|+|||||+++|++.+. -+.+ .|
T Consensus 150 fL~~~r~~l~~LP~-Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~-----YP----------------------- 199 (346)
T COG1084 150 FLRKARDHLKKLPA-IDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAP-----YP----------------------- 199 (346)
T ss_pred HHHHHHHHHhcCCC-CCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCC-----CC-----------------------
Confidence 34444444444421 356899999999999999999999999962 1111 11
Q ss_pred cccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe-----------------------E
Q 003736 108 RFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-----------------------V 164 (799)
Q Consensus 108 ~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~-----------------------V 164 (799)
|+...|.|=.+.-....+-+|||||+-+-|. +
T Consensus 200 -------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~ 254 (346)
T COG1084 200 -------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFL 254 (346)
T ss_pred -------------------------ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEE
Confidence 1111122211222233678999999998774 4
Q ss_pred ecCCC--CCChHHHHHHHHHcCCC-CCcEEEEeecCCCCCCc
Q 003736 165 TPANS--DLANSDALQIAGIADPD-GYRTIGIITKLDIMDRG 203 (799)
Q Consensus 165 ~~a~~--dl~~~dal~la~~~dp~-g~rtIgVlTK~Dl~~~g 203 (799)
++++. .+.-.+-..|..++.+. ..+++.|+||+|..+.+
T Consensus 255 ~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 255 FDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred EcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 44442 23333334566666654 35899999999999653
No 27
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.01 E-value=6e-09 Score=119.04 Aligned_cols=122 Identities=21% Similarity=0.353 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHhCCC--CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCc-cccceEEEEeccCCCcccccc
Q 003736 24 SVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGE 100 (799)
Q Consensus 24 ~l~~~i~kL~d~~~~~g~~--~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~ 100 (799)
.+-.+++.+.+.+..-+.. ..-...+|+|+|.+++|||||+|+|+|.+....+... +|+.+...
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~------------- 213 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDI------------- 213 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeE-------------
Confidence 4445666666544221111 1223468999999999999999999998643333221 22221111
Q ss_pred cccCCCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC------------------
Q 003736 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP------------------ 162 (799)
Q Consensus 101 ~~~~~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~------------------ 162 (799)
.++..+ ..++|+||||+.+..
T Consensus 214 --------------------------------------~~~~~~---~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 214 --------------------------------------PFERNG---KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred --------------------------------------EEEECC---cEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 111111 158999999975421
Q ss_pred ----e---EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCC
Q 003736 163 ----V---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 200 (799)
Q Consensus 163 ----~---V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~ 200 (799)
. |+++...+..++ .++++.+...+.+.|+|+||+|+.
T Consensus 253 ~~ad~~ilV~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HhCCEEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEECcccC
Confidence 0 788887777776 456666666789999999999998
No 28
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.99 E-value=2.3e-09 Score=99.60 Aligned_cols=36 Identities=36% Similarity=0.583 Sum_probs=28.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC-ccccce
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRP 84 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~-~~Tr~p 84 (799)
+|+|+|.+|+|||||+|+|+|......+.. .+|+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~ 37 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP 37 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee
Confidence 699999999999999999999765444443 455555
No 29
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.98 E-value=7.8e-09 Score=105.64 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=62.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
..|+|+|..++|||||+|+|+|..+ |.....+|. .. .++. ..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~-~~-----~~t~--~~----------------------------- 43 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTG-VV-----ETTM--KR----------------------------- 43 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccC-cc-----cccc--Cc-----------------------------
Confidence 3799999999999999999999764 221111111 00 0000 00
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe-----------------EecCCCCCChHHHHHHHHHcCCCCCcE
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-----------------VTPANSDLANSDALQIAGIADPDGYRT 190 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~-----------------V~~a~~dl~~~dal~la~~~dp~g~rt 190 (799)
..+..+..++++++||||+..... ++-...++...+ ..+++.+...+.++
T Consensus 44 ------------~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~~~~~d-~~~~~~l~~~~~~~ 110 (197)
T cd04104 44 ------------TPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTRFSSND-VKLAKAIQCMGKKF 110 (197)
T ss_pred ------------eeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCCCCHHH-HHHHHHHHHhCCCE
Confidence 001112245899999999864311 222344565555 34555555558899
Q ss_pred EEEeecCCCCCC
Q 003736 191 IGIITKLDIMDR 202 (799)
Q Consensus 191 IgVlTK~Dl~~~ 202 (799)
++|+||+|+..+
T Consensus 111 ilV~nK~D~~~~ 122 (197)
T cd04104 111 YFVRTKVDRDLS 122 (197)
T ss_pred EEEEecccchhh
Confidence 999999999653
No 30
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.98 E-value=8.9e-09 Score=101.31 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
|.|+++|.+++|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999864
No 31
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.98 E-value=5.5e-09 Score=106.84 Aligned_cols=105 Identities=23% Similarity=0.345 Sum_probs=66.4
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
-..|.|+|+|..++|||||+|+|+|..+.+.+....|.-|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-------------------------------------- 80 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-------------------------------------- 80 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee--------------------------------------
Confidence 457899999999999999999999987533333222322211
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC-------------------e---EecCCCCCChHH---HHHH
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP-------------------V---VTPANSDLANSD---ALQI 179 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~-------------------~---V~~a~~dl~~~d---al~l 179 (799)
..+..++...++|+||||+.... . |+++.......+ ..++
T Consensus 81 ---------------~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~ 145 (204)
T cd01878 81 ---------------RRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKV 145 (204)
T ss_pred ---------------EEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHH
Confidence 01111112268899999984320 0 666654433322 2355
Q ss_pred HHHcCCCCCcEEEEeecCCCCCC
Q 003736 180 AGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 180 a~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
.+.+...+.++++|+||+|+...
T Consensus 146 l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 146 LKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHHcCcCCCCEEEEEEccccCCh
Confidence 56665556899999999999754
No 32
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.98 E-value=7.6e-09 Score=116.34 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCCCC-CccccceE
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~-~~~Tr~p~ 85 (799)
+..|++||.+|||||||||+|++... -++. -.+||.|+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~ 197 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPN 197 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcE
Confidence 34799999999999999999999863 1221 23555554
No 33
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.97 E-value=6.9e-09 Score=100.53 Aligned_cols=26 Identities=46% Similarity=0.663 Sum_probs=23.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-.+|+++|.++||||||+|+|+|.++
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce
Confidence 35799999999999999999999875
No 34
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.97 E-value=1.2e-08 Score=123.67 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=90.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCC-CccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
+.++|++||.+|+|||||+|+|+|.++..++. ..+|+-+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~------------------------------------- 491 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE------------------------------------- 491 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee-------------------------------------
Confidence 46899999999999999999999987422221 2223222110
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC----------------------e---EecCCCCCChHHHHHH
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP----------------------V---VTPANSDLANSDALQI 179 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~----------------------~---V~~a~~dl~~~dal~l 179 (799)
.+++.+ ..++|+||||+.+.. . |+++...+..++ +.+
T Consensus 492 --------------~~~~~~---~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~-~~i 553 (712)
T PRK09518 492 --------------IVEIDG---EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQD-LKV 553 (712)
T ss_pred --------------EEEECC---CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHH-HHH
Confidence 111111 257899999975311 0 778887777776 456
Q ss_pred HHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCc-cccc
Q 003736 180 AGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGL 258 (799)
Q Consensus 180 a~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~-~~~l 258 (799)
+..+...+.++|+|+||+|+++... .+ .++........+....+. +.+.
T Consensus 554 ~~~~~~~~~piIiV~NK~DL~~~~~--~~----------------------------~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 554 MSMAVDAGRALVLVFNKWDLMDEFR--RQ----------------------------RLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HHHHHHcCCCEEEEEEchhcCChhH--HH----------------------------HHHHHHHHhccCCCCCCEEEEEC
Confidence 6666667899999999999985321 00 011111111112222232 3566
Q ss_pred ccCCChhHHHHHHHHHHHH
Q 003736 259 ADRCGVPQLAKKLNQILVQ 277 (799)
Q Consensus 259 ~~~~Gi~~L~~~L~~~L~~ 277 (799)
.++.|+..|.+.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 7889999998888776643
No 35
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.93 E-value=6.4e-09 Score=108.60 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=96.2
Q ss_pred CCCEEE-EEccCCCCHHHHHHHHhCCCCCCCC-CCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhh
Q 003736 46 ELPQVA-VVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (799)
Q Consensus 46 ~lPqIv-VvG~qSsGKSSllnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~ 123 (799)
.-|-++ ++|..++|||||+|||.+...-|+. -+.||+-++.. |...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~----------~~~~---------------------- 84 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL----------RLSY---------------------- 84 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH----------Hhhc----------------------
Confidence 445555 8999999999999999976665665 35566544221 1100
Q ss_pred hhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe---------------------EecCCCCCChHHHHHHHHH
Q 003736 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV---------------------VTPANSDLANSDALQIAGI 182 (799)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~---------------------V~~a~~dl~~~dal~la~~ 182 (799)
+..+|+|.||||+..... ++++....-..| ..+++.
T Consensus 85 ----------------------~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~d 141 (296)
T COG3596 85 ----------------------DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRD 141 (296)
T ss_pred ----------------------cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHH
Confidence 012799999999997421 345543222222 234443
Q ss_pred cCC-C-CCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhcc-CCCccccc-
Q 003736 183 ADP-D-GYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFR-SRPVYNGL- 258 (799)
Q Consensus 183 ~dp-~-g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~-~~~~~~~l- 258 (799)
+-- . ++|+|+|+|.+|...++.+|.. ..+.....+. .-+++....-.+||. .+|+|...
T Consensus 142 Vi~~~~~~~~i~~VtQ~D~a~p~~~W~~---------------~~~~p~~a~~--qfi~~k~~~~~~~~q~V~pV~~~~~ 204 (296)
T COG3596 142 VIILGLDKRVLFVVTQADRAEPGREWDS---------------AGHQPSPAIK--QFIEEKAEALGRLFQEVKPVVAVSG 204 (296)
T ss_pred HHHhccCceeEEEEehhhhhcccccccc---------------ccCCCCHHHH--HHHHHHHHHHHHHHhhcCCeEEecc
Confidence 322 2 3899999999999988755430 0111111111 123333333445565 47777554
Q ss_pred ccCCChhHHHHHHHHHHHHHHHh
Q 003736 259 ADRCGVPQLAKKLNQILVQHIKA 281 (799)
Q Consensus 259 ~~~~Gi~~L~~~L~~~L~~~I~~ 281 (799)
...+|+..|..+|-+.+-.+-+.
T Consensus 205 r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 205 RLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred ccCccHHHHHHHHHHhCcccccc
Confidence 55699999998888877654443
No 36
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.92 E-value=2.1e-08 Score=110.64 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-++.|++||.+|||||||||+|++..
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~ 182 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK 182 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC
Confidence 34789999999999999999999875
No 37
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.91 E-value=1.5e-08 Score=98.53 Aligned_cols=29 Identities=38% Similarity=0.588 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
+|+++|..++|||||+|+|++..+.+..+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~ 29 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTS 29 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeec
Confidence 48999999999999999999655544444
No 38
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.91 E-value=1e-08 Score=104.53 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=25.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~ 76 (799)
+|++||.+++|||||+|+|+|...+.++
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~ 29 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK 29 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc
Confidence 6999999999999999999999865554
No 39
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.90 E-value=7.5e-08 Score=110.58 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHHHHhCCCCC-CCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 23 GSVIPLVNKLQDIFAQLGSQST-IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 23 ~~l~~~i~kL~d~~~~~g~~~~-i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..+-.+.++|.++.+....... -+-++|+++|.+|+|||||+|+|+|.++
T Consensus 190 ~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~ 240 (449)
T PRK05291 190 EKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEER 240 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444566666665544322211 2346899999999999999999999864
No 40
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.89 E-value=9.3e-08 Score=109.39 Aligned_cols=52 Identities=31% Similarity=0.443 Sum_probs=37.0
Q ss_pred CccchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 21 l~~~l~~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+...+..+++.|.++++.......-+-.+|++||.+|+|||||+|+|+|.++
T Consensus 177 ~~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ 228 (442)
T TIGR00450 177 LNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDR 228 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3344556666677766655222222456999999999999999999999864
No 41
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.89 E-value=1.1e-08 Score=102.67 Aligned_cols=101 Identities=25% Similarity=0.301 Sum_probs=67.2
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCC--ccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHH
Q 003736 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQA 121 (799)
Q Consensus 44 ~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~ 121 (799)
.-..|.|+|+|..++|||||+|+|+|..+.+.-+. .+|+-+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~------------------------------------- 57 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI------------------------------------- 57 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE-------------------------------------
Confidence 35778999999999999999999999864332111 012111
Q ss_pred hhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC------------------------e---EecCCCCCChH
Q 003736 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP------------------------V---VTPANSDLANS 174 (799)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~------------------------~---V~~a~~dl~~~ 174 (799)
....+ + .+++|+||||+.... . |++++..+...
T Consensus 58 ----------------~~~~~--~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~ 117 (179)
T TIGR03598 58 ----------------NFFEV--N--DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKEL 117 (179)
T ss_pred ----------------EEEEe--C--CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHH
Confidence 00111 1 168899999975310 0 77777777666
Q ss_pred HHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 175 DALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 175 dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
+. .+.+.+...+.++++|+||+|+++.
T Consensus 118 ~~-~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 118 DL-EMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence 53 4555556668899999999999853
No 42
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.88 E-value=2.3e-08 Score=98.48 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|++||.+++|||||+|+|+|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 489999999999999999998764
No 43
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.87 E-value=1.6e-08 Score=99.16 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=23.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
|.|+|+|..++|||||+|+|++..+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~ 26 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA 26 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc
Confidence 78999999999999999999988753
No 44
>PRK15494 era GTPase Era; Provisional
Probab=98.84 E-value=3.3e-08 Score=109.58 Aligned_cols=25 Identities=32% Similarity=0.704 Sum_probs=23.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..|++||.+|+|||||+|+|+|..+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~ 77 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL 77 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce
Confidence 3899999999999999999999875
No 45
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.83 E-value=3.8e-08 Score=112.97 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-+..|++||.+|||||||||+|++..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC
Confidence 44789999999999999999999975
No 46
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.83 E-value=4.4e-08 Score=93.52 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=37.3
Q ss_pred ccCEEEEeCCCCCCCCe---------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 147 VLDITLVDLPGITKVPV---------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 147 ~~~LtLVDlPGi~~~~~---------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..+++|+|+||+..... |+++.......... +.......+.++++|+||+|++..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCeEEEEEEccccCCh
Confidence 34899999999865321 66666655544432 333444457889999999999864
No 47
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.81 E-value=3e-08 Score=104.39 Aligned_cols=101 Identities=21% Similarity=0.339 Sum_probs=71.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc-cccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
+|||||.+|+|||||.|.++|.++.|++.-. +||+- ..+
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~------------ilg---------------------------- 113 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR------------ILG---------------------------- 113 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeee------------eeE----------------------------
Confidence 7999999999999999999999997776643 23322 111
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------------------EecCC--CCCChHHHHHH
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------------------VTPAN--SDLANSDALQI 179 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------------------V~~a~--~dl~~~dal~l 179 (799)
|....-..++|+||||+..... |+++. ........|.+
T Consensus 114 --------------i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~ 179 (379)
T KOG1423|consen 114 --------------IITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHM 179 (379)
T ss_pred --------------EEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHH
Confidence 1111233799999999997532 55665 33344555778
Q ss_pred HHHcCCCCCcEEEEeecCCCCCCchh
Q 003736 180 AGIADPDGYRTIGIITKLDIMDRGTD 205 (799)
Q Consensus 180 a~~~dp~g~rtIgVlTK~Dl~~~g~~ 205 (799)
.+++. ..+.|.|+||+|...+...
T Consensus 180 l~~ys--~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 180 LEEYS--KIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred HHHHh--cCCceeeccchhcchhhhH
Confidence 88875 4678999999999876543
No 48
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.81 E-value=6.6e-08 Score=109.58 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=23.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
++.|++||.+|||||||||+|++..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak 182 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK 182 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999999886
No 49
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.81 E-value=5.1e-08 Score=107.44 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-++.|++||.+|||||||||+|++..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~ 181 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAK 181 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999999875
No 50
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.78 E-value=2.8e-08 Score=115.21 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=97.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
.+|+++|++|+|||||+|+|+|... -+|+ +| +.|.+...+.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgN-----wp------GvTVEkkeg~~-------------------------- 45 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGN-----WP------GVTVEKKEGKL-------------------------- 45 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecC-----CC------CeeEEEEEEEE--------------------------
Confidence 4699999999999999999999973 3333 44 22222222211
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe------------------EecCCCCCChHHH-HHHHHHcCCCCC
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV------------------VTPANSDLANSDA-LQIAGIADPDGY 188 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~------------------V~~a~~dl~~~da-l~la~~~dp~g~ 188 (799)
+..+ -.+.+|||||+++-.. ++-.-.|-+|-+. +.+.-++-.-|.
T Consensus 46 -------------~~~~---~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~ 109 (653)
T COG0370 46 -------------KYKG---HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGI 109 (653)
T ss_pred -------------EecC---ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCC
Confidence 1111 1589999999997532 1111122233322 444445555688
Q ss_pred cEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCccc-ccccCCChhHH
Q 003736 189 RTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYN-GLADRCGVPQL 267 (799)
Q Consensus 189 rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~~~-~l~~~~Gi~~L 267 (799)
++|.++|++|...+. +..++. .+.|+.. ..|+.. ....+.|++.|
T Consensus 110 p~ilaLNm~D~A~~~-------------------------------Gi~ID~-~~L~~~L--GvPVv~tvA~~g~G~~~l 155 (653)
T COG0370 110 PMILALNMIDEAKKR-------------------------------GIRIDI-EKLSKLL--GVPVVPTVAKRGEGLEEL 155 (653)
T ss_pred CeEEEeccHhhHHhc-------------------------------CCcccH-HHHHHHh--CCCEEEEEeecCCCHHHH
Confidence 899999999887531 111111 1122222 346654 34567898888
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 003736 268 AKKLNQILVQHIKAILPGLKSRISSALVSVA 298 (799)
Q Consensus 268 ~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~ 298 (799)
.+++.+..........|...++|++.+.++.
T Consensus 156 ~~~i~~~~~~~~~~~~~~y~~~ie~~i~~l~ 186 (653)
T COG0370 156 KRAIIELAESKTTPREVDYGEEIEEEIKELE 186 (653)
T ss_pred HHHHHHhccccccccccccchHHHHHHHHHH
Confidence 8888776666554556777777777776665
No 51
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.78 E-value=3.9e-08 Score=112.31 Aligned_cols=99 Identities=24% Similarity=0.228 Sum_probs=65.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC-CccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
.|+|||.+|+|||||+|+|+|.....++. ..+||......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~--------------------------------------- 41 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGD--------------------------------------- 41 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEE---------------------------------------
Confidence 48999999999999999999986422222 12333321110
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe----------------------EecCCCCCChHHHHHHHHHcCC
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV----------------------VTPANSDLANSDALQIAGIADP 185 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~----------------------V~~a~~dl~~~dal~la~~~dp 185 (799)
+++.+ ..+.||||||+..... |+++...+...+ ..+++.+..
T Consensus 42 ------------~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~ 105 (429)
T TIGR03594 42 ------------AEWGG---REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRK 105 (429)
T ss_pred ------------EEECC---eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH
Confidence 11111 1578999999853210 788887776655 345555555
Q ss_pred CCCcEEEEeecCCCCCC
Q 003736 186 DGYRTIGIITKLDIMDR 202 (799)
Q Consensus 186 ~g~rtIgVlTK~Dl~~~ 202 (799)
.+.++|+|+||+|+...
T Consensus 106 ~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 106 SGKPVILVANKIDGKKE 122 (429)
T ss_pred hCCCEEEEEECccCCcc
Confidence 67899999999998754
No 52
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.77 E-value=9.7e-08 Score=92.07 Aligned_cols=24 Identities=54% Similarity=0.807 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|+++|..++|||||+|+|+|..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~ 26 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDR 26 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCce
Confidence 699999999999999999999864
No 53
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-07 Score=109.18 Aligned_cols=149 Identities=24% Similarity=0.306 Sum_probs=96.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCC-CcccChhHHHHHHHHhhhhh
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPG-KRFYDFSEIRREIQAQTDKE 126 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g-~~~~d~~ei~~~i~~~~~~~ 126 (799)
-.|++.|+.|+||||++||++-.++||.|.|.||.|-+++. ++...+ +++-.+| ..-.|...+...+.+.....
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--gadG~e---~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GADGAE---AVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--ccCCcc---eeeccCCCcccccHHHHhHHHHhcCccc
Confidence 37999999999999999999999999999999999987763 221111 1222222 11123333333332211110
Q ss_pred cCCCCCccccceEEEEecCCc------cCEEEEeCCCCCCCCe-----------------EecCCCCCChHHHHHHHHHc
Q 003736 127 AGGNKGVSDKQIRLKIFSPHV------LDITLVDLPGITKVPV-----------------VTPANSDLANSDALQIAGIA 183 (799)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~------~~LtLVDlPGi~~~~~-----------------V~~a~~dl~~~dal~la~~~ 183 (799)
. -...--++|+-|+- .+++|||-||+.-.+. |+.|.+.++.++ .++...+
T Consensus 185 -----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v 257 (749)
T KOG0448|consen 185 -----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV 257 (749)
T ss_pred -----c-cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh
Confidence 0 11234566666653 2899999999986543 778877777766 6777777
Q ss_pred CCCCCcEEEEeecCCCCCCchhHHH
Q 003736 184 DPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 184 dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
......++++.||||......++.+
T Consensus 258 s~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 258 SEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred hccCCcEEEEechhhhhcccHHHHH
Confidence 7664555666688999977666543
No 54
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.77 E-value=8e-08 Score=111.21 Aligned_cols=102 Identities=25% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCC-ccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhh
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~ 123 (799)
-..|.|+|||.+|+|||||+|+|+|..+..++.. .+||-.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~--------------------------------------- 76 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDR--------------------------------------- 76 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEee---------------------------------------
Confidence 4669999999999999999999999764211111 112211
Q ss_pred hhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe----------------------EecCCCCCChHHHHHHHH
Q 003736 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV----------------------VTPANSDLANSDALQIAG 181 (799)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~----------------------V~~a~~dl~~~dal~la~ 181 (799)
+...+...+ ..+.|+||||+..... |+++.......+ ..+++
T Consensus 77 --------------~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~ 140 (472)
T PRK03003 77 --------------VSYDAEWNG-RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVAR 140 (472)
T ss_pred --------------EEEEEEECC-cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHH
Confidence 111111111 1578999999763210 788876665444 34555
Q ss_pred HcCCCCCcEEEEeecCCCCC
Q 003736 182 IADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 182 ~~dp~g~rtIgVlTK~Dl~~ 201 (799)
.+...+.++|+|+||+|+..
T Consensus 141 ~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 141 VLRRSGKPVILAANKVDDER 160 (472)
T ss_pred HHHHcCCCEEEEEECccCCc
Confidence 55556889999999999864
No 55
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.76 E-value=3.2e-08 Score=95.28 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=22.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-+|++||..+||||||+++|.|.+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC
Confidence 3799999999999999999999874
No 56
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.7e-07 Score=102.88 Aligned_cols=103 Identities=30% Similarity=0.372 Sum_probs=68.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
++||++|.+|+|||||||+|+..+. .++.-..++++
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~dr-----------sIVSpv~GTTR--------------------------------- 304 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDR-----------SIVSPVPGTTR--------------------------------- 304 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc-----------eEeCCCCCcch---------------------------------
Confidence 6999999999999999999999984 22222223333
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe-----------------------EecCCCCCChHHHHHHHHHcC
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-----------------------VTPANSDLANSDALQIAGIAD 184 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~-----------------------V~~a~~dl~~~dal~la~~~d 184 (799)
|.|...+. ++...+.|+||.|+..... |++|+..+..++ +++++.+.
T Consensus 305 --------Daiea~v~-~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd-~~i~~~l~ 374 (531)
T KOG1191|consen 305 --------DAIEAQVT-VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESD-LKIARILE 374 (531)
T ss_pred --------hhheeEee-cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccc-hHHHHHHH
Confidence 23333333 3344789999999997221 788866565555 33333222
Q ss_pred C------------CCCcEEEEeecCCCCCCch
Q 003736 185 P------------DGYRTIGIITKLDIMDRGT 204 (799)
Q Consensus 185 p------------~g~rtIgVlTK~Dl~~~g~ 204 (799)
. ...|.|.|.||.|+..+..
T Consensus 375 ~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 375 TEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred HhccceEEEeccccccceEEEechhhccCccc
Confidence 2 2367888999999987644
No 57
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.74 E-value=5.1e-08 Score=97.32 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=35.7
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..++||||||..+... |+++........ ..+...+...+.+.++|+||+|+..
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHHCCCCeEEEEECCCCcc
Confidence 4799999999765311 677765544332 2333333335789999999999986
No 58
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.74 E-value=1e-07 Score=115.51 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|++||.+|+|||||+|+|+|...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~ 28 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ 28 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999999999999999999864
No 59
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.73 E-value=4.8e-08 Score=101.11 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=26.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC--Cccccce
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRP 84 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~--~~~Tr~p 84 (799)
+|+|+|..+|||||+.|+|+|.+.++.+. ..||+..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~ 39 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQEC 39 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCccccc
Confidence 69999999999999999999999877763 3455543
No 60
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.73 E-value=6.8e-08 Score=93.29 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=19.5
Q ss_pred EEEccCCCCHHHHHHHHhCCC
Q 003736 51 AVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 51 vVvG~qSsGKSSllnaL~G~~ 71 (799)
|++|..++|||||+|+|+|..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~ 21 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR 21 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc
Confidence 589999999999999999875
No 61
>PRK04213 GTP-binding protein; Provisional
Probab=98.73 E-value=1.3e-07 Score=96.28 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=25.0
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-..+.|+++|..++|||||+|+|+|..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~ 34 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV 34 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999999864
No 62
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.70 E-value=8e-08 Score=101.81 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCC-ccccce
Q 003736 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRP 84 (799)
Q Consensus 44 ~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~-~~Tr~p 84 (799)
...-.+|+|+|..++|||||+|+|+|.....++.- .+|+.+
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~ 69 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRV 69 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEE
Confidence 34556999999999999999999999986565432 344443
No 63
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.69 E-value=1.2e-07 Score=114.88 Aligned_cols=101 Identities=23% Similarity=0.249 Sum_probs=66.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCC-ccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
.+|.|++||.+|+|||||+|+|+|..+..++.. .+||..+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~-------------------------------------- 315 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVS-------------------------------------- 315 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEE--------------------------------------
Confidence 457899999999999999999999864222221 12222211
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC-------------------e---EecCCCCCChHHHHHHHHH
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP-------------------V---VTPANSDLANSDALQIAGI 182 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~-------------------~---V~~a~~dl~~~dal~la~~ 182 (799)
...... ...+.||||||+.... . |+++...+...+ ..+++.
T Consensus 316 ---------------~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~ 378 (712)
T PRK09518 316 ---------------YDAEWA-GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRM 378 (712)
T ss_pred ---------------EEEEEC-CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHH
Confidence 111100 1157899999986421 0 788887766555 345566
Q ss_pred cCCCCCcEEEEeecCCCCC
Q 003736 183 ADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 183 ~dp~g~rtIgVlTK~Dl~~ 201 (799)
+...+.++|+|+||+|+..
T Consensus 379 Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 379 LRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHhcCCCEEEEEECccccc
Confidence 6667899999999999864
No 64
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.68 E-value=1e-07 Score=92.80 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.|+|+|++++|||||+|+|+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~ 24 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE 24 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc
Confidence 48999999999999999999863
No 65
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.67 E-value=2.1e-07 Score=106.56 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|.|++||.+|+|||||+|+|+|...
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~ 26 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRD 26 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 37899999999999999999999864
No 66
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.63 E-value=2.5e-07 Score=89.67 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.1
Q ss_pred EEccCCCCHHHHHHHHhCCCC
Q 003736 52 VVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 52 VvG~qSsGKSSllnaL~G~~~ 72 (799)
|+|..++|||||+|+|+|..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~ 21 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ 21 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc
Confidence 589999999999999999863
No 67
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.61 E-value=1.8e-07 Score=92.29 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEccCCCCHHHHHHHHhCCCC
Q 003736 52 VVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 52 VvG~qSsGKSSllnaL~G~~~ 72 (799)
++|.+|+|||||+|+|+|..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999874
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.60 E-value=5.4e-07 Score=92.25 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|++++|||||++.+++.+|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f 25 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF 25 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Confidence 699999999999999999998876
No 69
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.60 E-value=8.5e-08 Score=97.08 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=38.8
Q ss_pred CCccCEEEEeCCCCCCC----------Ce----EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCC
Q 003736 145 PHVLDITLVDLPGITKV----------PV----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 200 (799)
Q Consensus 145 p~~~~LtLVDlPGi~~~----------~~----V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~ 200 (799)
.+...++|||+||...- .. |+++..++..+. .+.++.+...+.+.|+|+||+|+.
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ccccceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccccccceEEeeeeccch
Confidence 34458999999996531 11 899998887665 334444444567799999999999
No 70
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.60 E-value=2.7e-07 Score=96.34 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=40.9
Q ss_pred ccCEEEEeCCCCCCC------------Ce----EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 147 VLDITLVDLPGITKV------------PV----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 147 ~~~LtLVDlPGi~~~------------~~----V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
...++||||||..+- +. |+++..++..++ .+++..+...+.+.|+|+||+|++++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALALNIPVFVVVTKIDLAPA 153 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEECccccCH
Confidence 447999999996431 11 788888877666 45566666678899999999999864
No 71
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.59 E-value=3.7e-07 Score=98.60 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=26.6
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 44 TIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 44 ~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+....+|+|+|..++||||++|+|+|..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v 63 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERI 63 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56778999999999999999999999975
No 72
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.59 E-value=4.7e-07 Score=90.05 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=34.2
Q ss_pred CEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 149 DITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
.+.|+||||..+... |+++......++ +.....+...+.+.|+|+||+|+.+
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQT-LANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhh-HHHHHHHHHcCCCEEEEEECCCCCc
Confidence 588999999875321 777766554333 2222222235778999999999864
No 73
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.56 E-value=5.5e-07 Score=87.78 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP 74 (799)
+|+++|.+++|||||+|+|+|..+.+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~ 27 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN 27 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc
Confidence 68999999999999999999998633
No 74
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.55 E-value=2.8e-07 Score=90.41 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
.+|+|+|.+++|||||+++|++..+.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~ 29 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN 29 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 58999999999999999999998763
No 75
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.52 E-value=7e-07 Score=88.04 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
+|++||..++|||||+|+|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999874
No 76
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.50 E-value=5.2e-07 Score=97.19 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=25.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~ 76 (799)
.|+|||..++|||||+|+|++..+.+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~ 33 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSD 33 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccc
Confidence 7999999999999999999999875543
No 77
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.50 E-value=1.9e-06 Score=87.91 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++++++..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~ 24 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999999999998865
No 78
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.50 E-value=8.2e-07 Score=87.32 Aligned_cols=25 Identities=20% Similarity=0.487 Sum_probs=22.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|||+.++|||||++++.+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~ 28 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF 28 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC
Confidence 5899999999999999999987765
No 79
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.50 E-value=2.6e-07 Score=88.72 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=23.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|+|.+++|||||+|+|.+..+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~ 25 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF 25 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC
Confidence 3799999999999999999999875
No 80
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.50 E-value=1.6e-06 Score=84.47 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|+|+.++|||||++++++..|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF 26 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999997764
No 81
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.49 E-value=1.9e-06 Score=85.11 Aligned_cols=24 Identities=33% Similarity=0.745 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||+++|++..|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~ 25 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 689999999999999999998765
No 82
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.48 E-value=7.1e-07 Score=85.81 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|..++|||||+|+|+|..+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC
Confidence 489999999999999999999875
No 83
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.47 E-value=1.2e-06 Score=86.17 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|..++|||||+++|++..+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~ 25 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF 25 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998865
No 84
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.47 E-value=1.7e-06 Score=87.72 Aligned_cols=52 Identities=31% Similarity=0.460 Sum_probs=34.6
Q ss_pred cCEEEEeCCCCCCC----------C-e---EecCCCCCChHH--HHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKV----------P-V---VTPANSDLANSD--ALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~----------~-~---V~~a~~dl~~~d--al~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..++|+||||.... . . |+++......++ .+.+++. .+.+.++|+||+|++..
T Consensus 68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI---LCKKLIVVLNKIDLIPE 135 (192)
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH---cCCCEEEEEECcccCCH
Confidence 37899999997531 0 1 778776554443 2333333 36789999999999853
No 85
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.46 E-value=8.6e-07 Score=87.68 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~ 75 (799)
.+|+|||.+++|||||++++++..+-+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~ 32 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV 32 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 5899999999999999999999875333
No 86
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.46 E-value=2.8e-06 Score=83.09 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|+.++|||||+|+|++..+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~ 25 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF 25 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998875
No 87
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.44 E-value=2.2e-06 Score=81.72 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=25.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
.+|+++|..+||||||+|+|++.. .|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 589999999999999999999987 45544
No 88
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.44 E-value=2.2e-06 Score=86.83 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||++++|||||++.+++..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~ 25 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAF 25 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998875
No 89
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.44 E-value=1.3e-06 Score=88.83 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=35.8
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..+.|+||||..+-.. |+++..+...+. ..+.+.+...+.+.++|+||+|+.+.
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALELGLKPIVVINKIDRPDA 132 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHH-HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3789999999764210 777766543332 22334343457899999999999753
No 90
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.43 E-value=1.4e-06 Score=85.78 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=23.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-+|+++|.+++|||||+++|++..|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~ 26 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999875
No 91
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.43 E-value=2.7e-06 Score=89.46 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
+|++||.+|+|||||+|+|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999986
No 92
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.41 E-value=2.8e-06 Score=83.54 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|+|..++|||||++++++..|
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~ 27 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY 27 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998865
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.41 E-value=1.9e-06 Score=84.07 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|..++|||||+++|++..+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~ 25 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF 25 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999875
No 94
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.41 E-value=3.6e-06 Score=82.51 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..|+|+|+.++|||||+++++...+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~ 26 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF 26 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3799999999999999999986544
No 95
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.40 E-value=1.1e-06 Score=86.78 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=23.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|||..++|||||++++++..|
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f 28 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF 28 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcC
Confidence 5899999999999999999999876
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.39 E-value=3.7e-06 Score=81.83 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|..++|||||+++|++..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~ 25 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF 25 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998865
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.39 E-value=3.8e-06 Score=81.89 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|.+++|||||+|+|++..+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~ 25 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTF 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998865
No 98
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.39 E-value=2.2e-06 Score=83.64 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||+++|++..+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~ 25 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999999876
No 99
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.38 E-value=2.2e-06 Score=82.01 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|++||++++|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998864
No 100
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.38 E-value=1.3e-06 Score=85.35 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP 74 (799)
+|+|+|..++|||||+++|++..+.+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~ 27 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKE 27 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 69999999999999999999887633
No 101
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.37 E-value=4.2e-06 Score=84.63 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++++++..|
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~ 25 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF 25 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc
Confidence 699999999999999999998875
No 102
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=3.8e-06 Score=82.59 Aligned_cols=27 Identities=19% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+++|+|+|..++|||||+++|++..+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~ 32 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLF 32 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC
Confidence 357999999999999999999997655
No 103
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.36 E-value=6.6e-06 Score=81.26 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|++||.+++||||+++++++..+
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~ 26 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998765
No 104
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.36 E-value=2.4e-06 Score=83.42 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|..++|||||++++++..+
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~ 27 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF 27 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 799999999999999999998764
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.36 E-value=6.4e-06 Score=82.94 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|++||..++|||||++++++..+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~ 28 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEF 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc
Confidence 799999999999999999998765
No 106
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.35 E-value=1.3e-06 Score=93.92 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=38.8
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..++||||||..+-.. |+++...+..++ ..+++.+...+.+.|+|+||+|+..
T Consensus 64 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 64 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCCCC
Confidence 3789999999764210 888888776554 3455555556789999999999975
No 107
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.35 E-value=2.8e-06 Score=82.73 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
+|+|+|..++|||||+++|+|..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999986
No 108
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.35 E-value=2.1e-06 Score=101.29 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
+..|.|+|+|..++|||||||+|+|..+.....|..|+-.-...+. .. .. .+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~-~~----~~-----~~~----------------- 54 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIP-MD----VI-----EGI----------------- 54 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEee-ec----cc-----ccc-----------------
Confidence 4568999999999999999999999977554445455421000000 00 00 000
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC----------e----EecCCCCCChHHHHHHHHHcCCCCCcE
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP----------V----VTPANSDLANSDALQIAGIADPDGYRT 190 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~----------~----V~~a~~dl~~~dal~la~~~dp~g~rt 190 (799)
.+ ...-..++.. ..+.++|+||||...-. . |+++...+..++ ...++.+...+.+.
T Consensus 55 --~~------~~~~~~~v~~-~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~~l~~~~vpi 124 (590)
T TIGR00491 55 --CG------DLLKKFKIRL-KIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMYKTPF 124 (590)
T ss_pred --cc------cccccccccc-ccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhH-HHHHHHHHHcCCCE
Confidence 00 0000011111 12469999999964311 0 778876655443 22333333357889
Q ss_pred EEEeecCCCCC
Q 003736 191 IGIITKLDIMD 201 (799)
Q Consensus 191 IgVlTK~Dl~~ 201 (799)
|.|+||+|+.+
T Consensus 125 IVv~NK~Dl~~ 135 (590)
T TIGR00491 125 VVAANKIDRIP 135 (590)
T ss_pred EEEEECCCccc
Confidence 99999999985
No 109
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.34 E-value=4.5e-06 Score=84.55 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||+++|++-.|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f 24 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF 24 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999999999987654
No 110
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.33 E-value=4.4e-06 Score=82.08 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
+|+|||..++|||||++.+++..+-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~ 26 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYE 26 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6999999999999999999988763
No 111
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.33 E-value=9e-06 Score=78.84 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|+|+.++|||||+++|++..|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~ 26 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF 26 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999998875
No 112
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.33 E-value=1.5e-06 Score=84.94 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP 74 (799)
+|+|+|..++|||||+|+|++..+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999998644
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.32 E-value=1.9e-06 Score=84.02 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
+|+|||..++|||||++.|++..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~ 23 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPEN 23 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccC
Confidence 58999999999999999999875
No 114
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.32 E-value=4.2e-06 Score=83.40 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=23.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|+|+.++|||||++++++..|
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~ 29 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKF 29 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998876
No 115
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.32 E-value=1.7e-06 Score=84.44 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|+|||..++|||||++++++..+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~ 25 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998865
No 116
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.32 E-value=1e-06 Score=90.81 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=40.5
Q ss_pred CccccceEEEEecCCccCEEEEeCCCCCCCC-----------e---EecCCCCCChHHH--HHHHHHcCCCCCcEEEEee
Q 003736 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVP-----------V---VTPANSDLANSDA--LQIAGIADPDGYRTIGIIT 195 (799)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~-----------~---V~~a~~dl~~~da--l~la~~~dp~g~rtIgVlT 195 (799)
+++-+.....+.. +-..+.|+||||..... . |+++...+..++. ..+++... ..+.|+|+|
T Consensus 62 g~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~--~~~iIvviN 138 (208)
T cd04166 62 GITIDVAYRYFST-PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLG--IRHVVVAVN 138 (208)
T ss_pred CcCeecceeEEec-CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcC--CCcEEEEEE
Confidence 4454444444433 23478999999964310 0 7888776654432 33444332 145788999
Q ss_pred cCCCCCC
Q 003736 196 KLDIMDR 202 (799)
Q Consensus 196 K~Dl~~~ 202 (799)
|+|+...
T Consensus 139 K~D~~~~ 145 (208)
T cd04166 139 KMDLVDY 145 (208)
T ss_pred chhcccC
Confidence 9999753
No 117
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.31 E-value=2.7e-06 Score=98.97 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=28.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC-Cccccc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRR 83 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~-~~~Tr~ 83 (799)
+|+|||.+++||||++|+|+|...+.++. ..+|..
T Consensus 120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr 155 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS 155 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCCCCceE
Confidence 79999999999999999999998655544 234443
No 118
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.31 E-value=1.1e-06 Score=94.11 Aligned_cols=54 Identities=28% Similarity=0.322 Sum_probs=37.1
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..++||||||..+-.. |+++......+. ..+.+.+...+.+.++|+||+|+...
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECCccCCC
Confidence 3789999999864210 677776555432 33444445567899999999999854
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.30 E-value=7.2e-06 Score=79.88 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|..++|||||+++|++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~ 24 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL 24 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc
Confidence 589999999999999999999875
No 120
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.30 E-value=2.8e-06 Score=89.51 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=37.1
Q ss_pred CEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 149 DITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
.+.|+||||...-.. |+++...+..+. ..+.+.+...+.+.|+|+||+|+..
T Consensus 65 ~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~-~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 65 KVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQT-RILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccccC
Confidence 789999999865311 788887766433 2334444445789999999999974
No 121
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.30 E-value=2.7e-06 Score=83.73 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-+|+|||+.++|||||++++++..|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3799999999999999999998875
No 122
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.30 E-value=5.3e-06 Score=81.56 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|..++|||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999999876
No 123
>PTZ00369 Ras-like protein; Provisional
Probab=98.30 E-value=1.1e-05 Score=81.55 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-..|+|||..++|||||++++.+..|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~ 30 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF 30 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999998765
No 124
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.29 E-value=2.5e-06 Score=83.80 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 24 ~l~~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
.+-.+++.|.+.++.. ..-.-..|++||.+|+|||||+|+|.|...++++.
T Consensus 82 ~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~ 132 (157)
T cd01858 82 GKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAP 132 (157)
T ss_pred cHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCC
Confidence 3444566665543311 11112368899999999999999999987655544
No 125
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.28 E-value=8.5e-06 Score=79.71 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|++++|||||++.+.+..+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTF 26 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 799999999999999999998765
No 126
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.28 E-value=4.6e-06 Score=98.78 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=35.2
Q ss_pred cCEEEEeCCCCCCC-----------Ce---EecCCCCCChHH--HHHHHHHcCCCCCc-EEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKV-----------PV---VTPANSDLANSD--ALQIAGIADPDGYR-TIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~d--al~la~~~dp~g~r-tIgVlTK~Dl~~~ 202 (799)
..++|||+||..+- .. |++++.++..+. .+.+++. .|.+ .|+|+||+|+++.
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~---lgi~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL---LGIPHTIVVITKADRVNE 118 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCeEEEEEECCCCCCH
Confidence 46899999994321 01 888887665443 3344443 4566 9999999999864
No 127
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.28 E-value=3.8e-06 Score=81.50 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
+|+|+|..++|||||+|+|++..+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~ 26 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFN 26 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6999999999999999999988763
No 128
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.27 E-value=7.8e-06 Score=80.34 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|+|||+.++|||||++++++..|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~ 24 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF 24 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc
Confidence 489999999999999999987654
No 129
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.27 E-value=1.2e-05 Score=80.16 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|+|||+.++|||||++.+++..|
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f 27 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF 27 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 799999999999999999998765
No 130
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.27 E-value=1.3e-06 Score=89.38 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=37.3
Q ss_pred ccCEEEEeCCCCCCCC-----------e---EecCCCCCChHHHHHHHHHcCCCCCc-EEEEeecCCCCC
Q 003736 147 VLDITLVDLPGITKVP-----------V---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMD 201 (799)
Q Consensus 147 ~~~LtLVDlPGi~~~~-----------~---V~~a~~dl~~~dal~la~~~dp~g~r-tIgVlTK~Dl~~ 201 (799)
...++||||||..+-- . |+++...+..++ .++++.+...|.+ .|+|+||+|++.
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 3478999999975320 0 888888776665 2344444445665 789999999985
No 131
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.27 E-value=2.7e-06 Score=79.89 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=36.1
Q ss_pred CEEEEeCCCCCCCCe--------------EecCCCCCChHHHHH----HHHHcCCCCCcEEEEeecCCCCCC
Q 003736 149 DITLVDLPGITKVPV--------------VTPANSDLANSDALQ----IAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~----la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
.++|+|+||...... |++++.+....+... ........+.++++|+||+|+...
T Consensus 46 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 46 KLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 689999999764321 666665544443322 233444568999999999999864
No 132
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.26 E-value=4.1e-06 Score=99.66 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-|+++|..++|||||+++|+|.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~ 24 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN 24 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999974
No 133
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.26 E-value=6e-06 Score=82.03 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=23.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.-++|+++|..++|||||+++|+|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~ 38 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED 38 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC
Confidence 44689999999999999999999884
No 134
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.26 E-value=7.7e-06 Score=80.94 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEccCCCCHHHHHHHHhCCCC
Q 003736 50 VAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 50 IvVvG~qSsGKSSllnaL~G~~~ 72 (799)
|+|+|+.++|||||++.+.+..|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~ 23 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF 23 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC
Confidence 68999999999999999999875
No 135
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.26 E-value=5.5e-06 Score=81.02 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
+|+|||+.++|||||+++|.+-
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999853
No 136
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.25 E-value=1.1e-05 Score=82.42 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
...|+|||+.++|||||++.+.+..|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~ 31 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF 31 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998865
No 137
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.25 E-value=3.3e-06 Score=82.44 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||..++|||||+++|....+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~ 24 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV 24 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC
Confidence 589999999999999999977654
No 138
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.25 E-value=5.5e-06 Score=83.49 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.0
Q ss_pred HhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 38 QLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 38 ~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|.. ..-.+|+++|..+||||||+++|++..+
T Consensus 12 ~~~~~--~~~~ki~ilG~~~~GKStLi~~l~~~~~ 44 (190)
T cd00879 12 SLGLY--NKEAKILFLGLDNAGKTTLLHMLKDDRL 44 (190)
T ss_pred Hhhcc--cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34543 4568999999999999999999998764
No 139
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.25 E-value=4.1e-06 Score=89.81 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=37.2
Q ss_pred cCEEEEeCCCCCCCC-----------e---EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKVP-----------V---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~-----------~---V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..+.|+||||..+-. . |+++...+..+. ..+.+.....+.++|+|+||+|+...
T Consensus 71 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 71 CVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHHhcCCCEEEEEECCccCCC
Confidence 378999999975321 0 778877665443 23444444467899999999998754
No 140
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.24 E-value=6.3e-06 Score=84.64 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.|+++|..++|||||+++|+|..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999883
No 141
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.24 E-value=2.8e-06 Score=85.72 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=23.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
++|+++|.+++||||+++.|+|..+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~ 42 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRL 42 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999998764
No 142
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.23 E-value=1.3e-05 Score=81.81 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||..++|||||++.+++..|
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~ 25 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF 25 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998765
No 143
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.22 E-value=2e-05 Score=78.30 Aligned_cols=25 Identities=44% Similarity=0.715 Sum_probs=23.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..|+|+|+.++|||||++++++..|
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f 29 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSF 29 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4799999999999999999999876
No 144
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.22 E-value=2.2e-05 Score=77.62 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|..++|||||++.+++..|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~ 25 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998875
No 145
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.22 E-value=1.8e-05 Score=81.87 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=23.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|+|+.++|||||++.|++..+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~ 27 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF 27 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998875
No 146
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.21 E-value=4.4e-06 Score=83.73 Aligned_cols=31 Identities=32% Similarity=0.332 Sum_probs=26.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
..+|+|||.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 3589999999999999999999987656654
No 147
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.21 E-value=1.8e-05 Score=82.43 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++.+++..+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999976554
No 148
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.21 E-value=1.3e-05 Score=85.69 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
|+++||-+|+|||||||+|+|..-
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~s 88 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKS 88 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCc
Confidence 899999999999999999999963
No 149
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.20 E-value=1.7e-05 Score=79.93 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|+|+.++|||||+++|++..|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~ 25 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF 25 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999998876
No 150
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.20 E-value=5.2e-06 Score=82.81 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|..++|||||++.+++..+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~ 26 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998764
No 151
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.20 E-value=2.5e-06 Score=79.06 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=27.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
.+|++||..++||+||.++|-|.+.+++.+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT 31 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT 31 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc
Confidence 479999999999999999999999877665
No 152
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.20 E-value=4.8e-06 Score=80.57 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|..++|||||+++|++..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~ 24 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF 24 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999999999998863
No 153
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.20 E-value=1.5e-05 Score=78.91 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|++||..++|||||+++|++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~ 24 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999998754
No 154
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.20 E-value=5.9e-06 Score=81.34 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
-+|+|||+.++|||||++++++..|.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~ 28 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM 28 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 37999999999999999999988763
No 155
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.20 E-value=1.5e-05 Score=79.34 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|++||+.++|||||++++++..|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f 25 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF 25 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999999875
No 156
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.20 E-value=1.5e-05 Score=94.16 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=62.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
..|.|+++|..++|||||+++|.+..+.....+..|.-. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i--------------g~------------------------- 126 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI--------------GA------------------------- 126 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc--------------eE-------------------------
Confidence 458999999999999999999998765322221111100 00
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEE
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTI 191 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtI 191 (799)
..+.+ ++...++|+||||...-.. |++++.....+. ...++.....+.++|
T Consensus 127 ------------~~v~~--~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT-~e~i~~~~~~~vPiI 191 (587)
T TIGR00487 127 ------------YHVEN--EDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQT-IEAISHAKAANVPII 191 (587)
T ss_pred ------------EEEEE--CCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhH-HHHHHHHHHcCCCEE
Confidence 01111 1111689999999643210 777776554333 233344444578899
Q ss_pred EEeecCCCCC
Q 003736 192 GIITKLDIMD 201 (799)
Q Consensus 192 gVlTK~Dl~~ 201 (799)
+|+||+|+.+
T Consensus 192 VviNKiDl~~ 201 (587)
T TIGR00487 192 VAINKIDKPE 201 (587)
T ss_pred EEEECccccc
Confidence 9999999964
No 157
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.20 E-value=1.1e-05 Score=79.48 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.-+|+|+|+.++|||||++.+++..+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~ 30 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF 30 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999998765
No 158
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.19 E-value=4.6e-06 Score=81.85 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+|||.+++|||||+++|++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 3899999999999999999986
No 159
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.18 E-value=2.5e-05 Score=77.29 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..|+|+|+.++|||||++.+.+..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998765
No 160
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.17 E-value=1.2e-05 Score=97.49 Aligned_cols=101 Identities=22% Similarity=0.292 Sum_probs=62.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
..|.|+|+|..++|||||+++|.+..+.....+..|.-.
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~i----------------------------------------- 327 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHI----------------------------------------- 327 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeec-----------------------------------------
Confidence 458999999999999999999987664211111011000
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEE
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTI 191 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtI 191 (799)
. ...+++.+ ..++|+||||...-.. |+++...+..+. ...++.+...+.++|
T Consensus 328 --------g--a~~v~~~~---~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT-~e~i~~a~~~~vPiI 393 (787)
T PRK05306 328 --------G--AYQVETNG---GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQT-IEAINHAKAAGVPII 393 (787)
T ss_pred --------c--EEEEEECC---EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhH-HHHHHHHHhcCCcEE
Confidence 0 01111111 2689999999654211 778776655443 223334444578899
Q ss_pred EEeecCCCCC
Q 003736 192 GIITKLDIMD 201 (799)
Q Consensus 192 gVlTK~Dl~~ 201 (799)
+|+||+|+..
T Consensus 394 VviNKiDl~~ 403 (787)
T PRK05306 394 VAINKIDKPG 403 (787)
T ss_pred EEEECccccc
Confidence 9999999964
No 161
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.17 E-value=1.1e-05 Score=80.25 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..+|+++|.+++|||||+++|++..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~ 34 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS 34 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC
Confidence 35899999999999999999987654
No 162
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.17 E-value=7.7e-06 Score=97.05 Aligned_cols=19 Identities=37% Similarity=0.657 Sum_probs=17.5
Q ss_pred ccCCCCHHHHHHHHhCCCC
Q 003736 54 GSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 54 G~qSsGKSSllnaL~G~~~ 72 (799)
|++|+|||||+|+|+|..+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~ 19 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ 19 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC
Confidence 8999999999999999864
No 163
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.17 E-value=1.9e-05 Score=93.55 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=25.0
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+.-|.|+++|..++|||||||+|.|..+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v 31 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAV 31 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 4568999999999999999999998753
No 164
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.16 E-value=3.8e-06 Score=82.40 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=31.2
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCC-ccccce
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRP 84 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~-~~Tr~p 84 (799)
....+|+|+|.+++|||||+|+|+|...++++.+ .+|+++
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 4567999999999999999999999865565554 345444
No 165
>PLN03110 Rab GTPase; Provisional
Probab=98.16 E-value=2.5e-05 Score=80.99 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=23.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-.|+|||++++|||||++.|++..+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~ 37 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEF 37 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999999875
No 166
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.16 E-value=1.4e-05 Score=79.16 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|++++|||||++.++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~ 25 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999986654
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.14 E-value=9.9e-06 Score=97.39 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=24.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..|.|+|+|..++|||||+++|.+..+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~ 269 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQI 269 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 557999999999999999999998765
No 168
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.14 E-value=2.9e-05 Score=79.83 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
||+|||+.++|||||++.++...|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f 25 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF 25 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 799999999999999999997765
No 169
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.13 E-value=1.6e-05 Score=82.31 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|++||+.++|||||++.|++..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~ 25 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF 25 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998865
No 170
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.13 E-value=2.9e-05 Score=78.02 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|+|+|+.++|||||+++|++..+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~ 25 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF 25 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998865
No 171
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.12 E-value=4.9e-06 Score=87.14 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=40.8
Q ss_pred CEEEEeCCCCCCCCe---------------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 149 DITLVDLPGITKVPV---------------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~---------------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
.+++||+||+..... .+++...+.+.| +..+..+...+.+...|+||||.+.
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHHhhcCCCeEEeeehhhhhh
Confidence 689999999654321 677887787776 4456666778899999999999985
Q ss_pred C
Q 003736 202 R 202 (799)
Q Consensus 202 ~ 202 (799)
.
T Consensus 263 ~ 263 (320)
T KOG2486|consen 263 K 263 (320)
T ss_pred h
Confidence 4
No 172
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.12 E-value=1.6e-05 Score=78.65 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
||++||..++|||||++.+++..+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~ 24 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS 24 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998764
No 173
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.09 E-value=8.4e-06 Score=82.64 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 23 ~~l~~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..+-.+++.|.+.+. .-.+|++||.+|+|||||+|+|.+...
T Consensus 111 ~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 111 WGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 345556666655432 124799999999999999999998764
No 174
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.09 E-value=3.5e-05 Score=81.76 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++.+++..|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 699999999999999999988765
No 175
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.08 E-value=3e-05 Score=83.70 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-|-+||=+|+||||||++++...
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak 183 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK 183 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC
Confidence 36689999999999999999885
No 176
>PLN03108 Rab family protein; Provisional
Probab=98.08 E-value=4.2e-05 Score=78.99 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP 74 (799)
-.|+|||+.++|||||++.|++..|-+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~ 33 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 579999999999999999999887633
No 177
>CHL00071 tufA elongation factor Tu
Probab=98.08 E-value=6.1e-06 Score=93.94 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=37.6
Q ss_pred cCEEEEeCCCCCCC-----------Ce---EecCCCCCChHHHHHHHHHcCCCCCc-EEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKV-----------PV---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~dal~la~~~dp~g~r-tIgVlTK~Dl~~~ 202 (799)
..++||||||..+- .. |++|...+..++ .+++..+...|.+ .|+|+||+|+++.
T Consensus 75 ~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred eEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 36899999995321 01 889988887665 3344445555666 6789999999864
No 178
>PLN03118 Rab family protein; Provisional
Probab=98.06 E-value=2e-05 Score=81.27 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|||..++|||||+++|++..+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~ 39 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV 39 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3899999999999999999998764
No 179
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.05 E-value=3.5e-05 Score=91.57 Aligned_cols=117 Identities=16% Similarity=0.293 Sum_probs=65.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
-.|++||..++|||||+++|+... +..++.. + +....|..+..++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~----~----------------~~~~~D~~~~Ere--------- 48 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYT------GAISERE----M----------------REQVLDSMDLERE--------- 48 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc------CCCcccc----c----------------cccccCCChHHHh---------
Confidence 369999999999999999998753 2222110 0 0011111110000
Q ss_pred CCCCCccccceEEEEe--cCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEE
Q 003736 128 GGNKGVSDKQIRLKIF--SPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTI 191 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~--~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtI 191 (799)
.+-.+....+.+... ......+.|+||||..+-.. |+++......+....+.... ..+.+.|
T Consensus 49 -rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~~~ipiI 126 (595)
T TIGR01393 49 -RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-ENDLEII 126 (595)
T ss_pred -cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-HcCCCEE
Confidence 011122233444332 12234689999999875311 78888776655432222222 2467899
Q ss_pred EEeecCCCCC
Q 003736 192 GIITKLDIMD 201 (799)
Q Consensus 192 gVlTK~Dl~~ 201 (799)
.|+||+|+.+
T Consensus 127 iViNKiDl~~ 136 (595)
T TIGR01393 127 PVINKIDLPS 136 (595)
T ss_pred EEEECcCCCc
Confidence 9999999864
No 180
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.05 E-value=1.9e-05 Score=78.73 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-.+|+++|.+++|||||+++|++..+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~ 40 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV 40 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC
Confidence 35899999999999999999987655
No 181
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.04 E-value=9.2e-06 Score=78.45 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.++++|.+|+|||||+|+|+|..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999999875
No 182
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.04 E-value=5.3e-05 Score=74.43 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
+|+|||+.++|||||++.+++..|.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~ 26 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH 26 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6999999999999999999988763
No 183
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.04 E-value=5.9e-05 Score=74.91 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|+.++|||||+..+++..|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~ 25 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999987665
No 184
>PLN03127 Elongation factor Tu; Provisional
Probab=98.04 E-value=1.3e-05 Score=92.17 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=69.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
.-..|+++|..++|||||+++|+|.. -..|.. + . -.|.. .|. ..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~---~-~-----------~~~~~---------~D~--~~~-------- 104 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVL-AEEGKA---K-A-----------VAFDE---------IDK--APE-------- 104 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHH-HHhhcc---c-c-----------eeecc---------ccC--Chh--------
Confidence 33469999999999999999998652 011110 0 0 00000 000 000
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC-----------e---EecCCCCCChHHHHHHHHHcCCCCCc-E
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP-----------V---VTPANSDLANSDALQIAGIADPDGYR-T 190 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~-----------~---V~~a~~dl~~~dal~la~~~dp~g~r-t 190 (799)
....|++-+.....+... -..++||||||..+-- . |++++..+..++ .+++..+...|.+ .
T Consensus 105 --E~~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~gip~i 180 (447)
T PLN03127 105 --EKARGITIATAHVEYETA-KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQVGVPSL 180 (447)
T ss_pred --HhhcCceeeeeEEEEcCC-CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHcCCCeE
Confidence 012345555555555443 2378999999975420 0 889988776665 3444445555677 4
Q ss_pred EEEeecCCCCC
Q 003736 191 IGIITKLDIMD 201 (799)
Q Consensus 191 IgVlTK~Dl~~ 201 (799)
|+|+||+|+++
T Consensus 181 IvviNKiDlv~ 191 (447)
T PLN03127 181 VVFLNKVDVVD 191 (447)
T ss_pred EEEEEeeccCC
Confidence 78999999985
No 185
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.04 E-value=1.3e-05 Score=79.47 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..|+|||+.++|||||++++++..+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~ 27 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF 27 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999998764
No 186
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.03 E-value=2.3e-05 Score=81.09 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=35.9
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..+.|+||||..+-.. |+++........ .++.+.+...+.+.++|+||+|++.
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~~~ 137 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILEGLPIVLVINKIDRLI 137 (213)
T ss_pred EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCc
Confidence 4689999999764311 777766554432 3344444445688999999999873
No 187
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.03 E-value=6.1e-05 Score=76.22 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++.+++..|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~ 25 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF 25 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998865
No 188
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.03 E-value=4.6e-05 Score=76.83 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|++||..++|||||++.+....+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~ 42 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV 42 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Confidence 4899999999999999999965444
No 189
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.02 E-value=2.3e-05 Score=95.02 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
.+..|+|||..++|||||+|+|++.. +...+ . +... .|....|+....+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~------~~~~----------~g~~~~D~~~~e~-------- 57 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIHK-I------GEVH----------DGAATMDWMEQEK-------- 57 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCccc-c------cccc----------CCccccCCCHHHH--------
Confidence 35689999999999999999998642 10000 0 0000 0111112211110
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEE
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTI 191 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtI 191 (799)
..+++-+.....+...+ ..++||||||..+... |+++......++ ..+++.+...+.++|
T Consensus 58 ----~rgiti~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~~~p~i 131 (689)
T TIGR00484 58 ----ERGITITSAATTVFWKG-HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANRYEVPRI 131 (689)
T ss_pred ----hcCCCEecceEEEEECC-eEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHHcCCCEE
Confidence 12233333333333322 3799999999875321 788887776654 345555555678999
Q ss_pred EEeecCCCCCC
Q 003736 192 GIITKLDIMDR 202 (799)
Q Consensus 192 gVlTK~Dl~~~ 202 (799)
+|+||+|+...
T Consensus 132 vviNK~D~~~~ 142 (689)
T TIGR00484 132 AFVNKMDKTGA 142 (689)
T ss_pred EEEECCCCCCC
Confidence 99999999854
No 190
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.00 E-value=2e-05 Score=84.06 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.+-|-+||-+|||||||||||+...
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK 220 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK 220 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC
Confidence 3567799999999999999999885
No 191
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.99 E-value=2.1e-05 Score=77.91 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+++|..+||||||++.|+|.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999987
No 192
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.99 E-value=2.7e-05 Score=84.12 Aligned_cols=28 Identities=25% Similarity=0.550 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~ 76 (799)
.|.|||..++|||||+|+|.+..+.+..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~ 33 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISED 33 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS-----
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccc
Confidence 6899999999999999999999865554
No 193
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.99 E-value=2.1e-05 Score=82.06 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=38.4
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 200 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~ 200 (799)
..+.|+||||...-.. |+++...+..+. ..+++.+...+.+.|.|+||+|+.
T Consensus 73 ~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 73 YLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred eEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCcc
Confidence 3689999999765311 788887776554 345555555678999999999987
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.98 E-value=1.5e-05 Score=91.27 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=66.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhcC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g 128 (799)
.|+++|..++|||||+++|++.. +..++.-+ ..... .....|+.-.++.-+.+....+
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~------g~i~~~~~----~~~~~------~~~~~g~~~~~~~~~~D~~~~E------ 65 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYET------GAIDEHII----EELRE------EAKEKGKESFKFAWVMDRLKEE------ 65 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHc------CCcCHHHH----HHHHH------HHHhcCCcccchhhhhccCHhH------
Confidence 69999999999999999999764 11111100 00000 0000011101111111111111
Q ss_pred CCCCccccceEEEEecCCccCEEEEeCCCCCCC-C----------e---EecCCC--CCChHH--HHHHHHHcCCCCCcE
Q 003736 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-P----------V---VTPANS--DLANSD--ALQIAGIADPDGYRT 190 (799)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-~----------~---V~~a~~--dl~~~d--al~la~~~dp~g~rt 190 (799)
...|++-+.....+... ...++|+||||..+- . . |++++. .+..+. .+.+++... ..+.
T Consensus 66 r~rG~T~d~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~i 142 (425)
T PRK12317 66 RERGVTIDLAHKKFETD-KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQL 142 (425)
T ss_pred hhcCccceeeeEEEecC-CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeE
Confidence 11344555555444443 347999999995431 0 0 788876 554443 234444432 2468
Q ss_pred EEEeecCCCCC
Q 003736 191 IGIITKLDIMD 201 (799)
Q Consensus 191 IgVlTK~Dl~~ 201 (799)
|+|+||+|+.+
T Consensus 143 ivviNK~Dl~~ 153 (425)
T PRK12317 143 IVAINKMDAVN 153 (425)
T ss_pred EEEEEcccccc
Confidence 99999999985
No 195
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.97 E-value=0.00018 Score=74.98 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||..++|||||++.+++..|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f 25 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF 25 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999998875
No 196
>PRK00007 elongation factor G; Reviewed
Probab=97.97 E-value=1.2e-05 Score=97.43 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=72.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
.+..|+|||..++|||||+|+|+... |.. +. + +.... |....|+.... .
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~-~~-----~-g~v~~----------~~~~~D~~~~E--~------ 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVN-HK-----I-GEVHD----------GAATMDWMEQE--Q------ 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCc-cc-----c-ccccC----------CcccCCCCHHH--H------
Confidence 35689999999999999999997331 000 00 0 00000 11112221111 0
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC--e------------EecCCCCCChHHHHHHHHHcCCCCCcEE
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP--V------------VTPANSDLANSDALQIAGIADPDGYRTI 191 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~--~------------V~~a~~dl~~~dal~la~~~dp~g~rtI 191 (799)
..+++-+...+.+.-. ...++||||||..+-. + |++|...+..++ ..+++.+...|.+.|
T Consensus 58 ----~rg~ti~~~~~~~~~~-~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~~~p~i 131 (693)
T PRK00007 58 ----ERGITITSAATTCFWK-DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKYKVPRI 131 (693)
T ss_pred ----hCCCCEeccEEEEEEC-CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHcCCCEE
Confidence 1233333333333222 2379999999976421 0 889988887776 456666667789999
Q ss_pred EEeecCCCCCCc
Q 003736 192 GIITKLDIMDRG 203 (799)
Q Consensus 192 gVlTK~Dl~~~g 203 (799)
.|+||+|+.+..
T Consensus 132 v~vNK~D~~~~~ 143 (693)
T PRK00007 132 AFVNKMDRTGAD 143 (693)
T ss_pred EEEECCCCCCCC
Confidence 999999998643
No 197
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00016 Score=78.33 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=80.3
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCC---CCCCccccceEEEEeccCCCcccccccccCCCCc-----ccChhHHH
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLP---RGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-----FYDFSEIR 116 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP---~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~-----~~d~~ei~ 116 (799)
-.-|-|.++|.-|.||||+|+-|++.++ | .|..++|.+-+.+....++. ..||.. .+.|..+.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~--------~ipGnal~vd~~~pF~gL~ 126 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEG--------SIPGNALVVDAKKPFRGLN 126 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCccc--------ccCCceeeecCCCchhhhh
Confidence 3669999999999999999999999985 5 35566776665543322211 112221 12233332
Q ss_pred HHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe-------------------------EecCC-CC
Q 003736 117 REIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-------------------------VTPAN-SD 170 (799)
Q Consensus 117 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~-------------------------V~~a~-~d 170 (799)
..=.+-.++. .+.....+-+..+++||||||-+... +.++. -|
T Consensus 127 ~FG~aflnRf-----------~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD 195 (532)
T KOG1954|consen 127 KFGNAFLNRF-----------MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD 195 (532)
T ss_pred hhHHHHHHHH-----------HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc
Confidence 2222211221 11223333345799999999987532 33332 33
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEeecCCCCCCch
Q 003736 171 LANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 204 (799)
Q Consensus 171 l~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~ 204 (799)
+... --+.+..+...-..+=.|+||.|.++...
T Consensus 196 IsdE-f~~vi~aLkG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 196 ISDE-FKRVIDALKGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ccHH-HHHHHHHhhCCcceeEEEeccccccCHHH
Confidence 3322 12345555555677889999999998643
No 198
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.95 E-value=0.0001 Score=73.63 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..+|++||.+++|||||++.+..-.+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~ 38 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES 38 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999953333
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.91 E-value=9e-05 Score=88.19 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=36.3
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..+.|+||||..+-.. |+++...+..++...+ ..+...+.+.|.|+||+|+..
T Consensus 74 ~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~-~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 74 YILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHHCCCCEEEEEECCCCCc
Confidence 3689999999875311 8888877765543222 222234678999999999864
No 200
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.91 E-value=3.5e-05 Score=76.16 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=24.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.-.+|+|+|..++|||||+++|.|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999999853
No 201
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.90 E-value=9.8e-05 Score=82.10 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCC
Q 003736 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (799)
Q Consensus 30 ~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~ 76 (799)
|-.+|+..+.|-. -.|.|||..++|||||+|++++.=+||-=
T Consensus 5 ~iykDIa~RT~G~-----IyIGvvGpvrtGKSTfIn~fm~q~VlP~i 46 (492)
T TIGR02836 5 DIYKDIAERTQGD-----IYIGVVGPVRTGKSTFIKKFMELLVLPNI 46 (492)
T ss_pred hHHHHHHHHhCCc-----EEEEEEcCCCCChHHHHHHHHhhhccccc
Confidence 3456666666543 26999999999999999999999665543
No 202
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.88 E-value=7.8e-05 Score=77.58 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=22.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+|||+.++|||||+++++...|
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f 38 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCC
Confidence 4899999999999999999876654
No 203
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.88 E-value=0.00015 Score=73.00 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+|+++|..++|||||++.+....+
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~ 42 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEI 42 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC
Confidence 5899999999999999999975544
No 204
>PRK12739 elongation factor G; Reviewed
Probab=97.87 E-value=2.5e-05 Score=94.70 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=41.2
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..++||||||..+--. |++|...+..++ ..+++.+...|.+.|+|+||+|+...
T Consensus 73 ~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 73 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3789999999763210 889988887765 35666666678899999999999854
No 205
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.86 E-value=6.3e-05 Score=73.86 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+++|..++|||||++.+....+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~ 25 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI 25 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999965544
No 206
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.84 E-value=2.9e-05 Score=83.75 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=26.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
..+|+|||.+|+|||||+|+|+|.....++.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~ 148 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN 148 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 3579999999999999999999987655544
No 207
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.82 E-value=0.00092 Score=73.54 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=28.9
Q ss_pred EEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEE
Q 003736 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (799)
Q Consensus 50 IvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 86 (799)
|++||.+|+|||||+|+|++..+-...--.||+-|++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 6899999999999999999997522232357877754
No 208
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.81 E-value=3.4e-05 Score=87.72 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=43.3
Q ss_pred CccccceEEEEecCCccCEEEEeCCCCCCCC-----------e---EecCCCCCChHH--HHHHHHHcCCCCCcEEEEee
Q 003736 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVP-----------V---VTPANSDLANSD--ALQIAGIADPDGYRTIGIIT 195 (799)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~-----------~---V~~a~~dl~~~d--al~la~~~dp~g~rtIgVlT 195 (799)
+++-+.....+...+ ..++||||||..+-- . |++|..++..++ .+.+++.+. ..+.|.|+|
T Consensus 65 giTid~~~~~~~~~~-~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~--~~~iivviN 141 (406)
T TIGR02034 65 GITIDVAYRYFSTDK-RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG--IRHVVLAVN 141 (406)
T ss_pred CcCeEeeeEEEccCC-eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC--CCcEEEEEE
Confidence 444444444444433 378999999954210 0 889988876553 345555543 346888999
Q ss_pred cCCCCCC
Q 003736 196 KLDIMDR 202 (799)
Q Consensus 196 K~Dl~~~ 202 (799)
|+|+++.
T Consensus 142 K~D~~~~ 148 (406)
T TIGR02034 142 KMDLVDY 148 (406)
T ss_pred ecccccc
Confidence 9999853
No 209
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.81 E-value=0.00029 Score=70.52 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++.+++..|
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f 26 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998765
No 210
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.81 E-value=5.3e-05 Score=79.26 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=35.8
Q ss_pred ccCEEEEeCCCCCCC--------Ce---EecCCCCCChHHHHHHHHHcCCCCCc-EEEEeecCCCCCC
Q 003736 147 VLDITLVDLPGITKV--------PV---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMDR 202 (799)
Q Consensus 147 ~~~LtLVDlPGi~~~--------~~---V~~a~~dl~~~dal~la~~~dp~g~r-tIgVlTK~Dl~~~ 202 (799)
...+++||+||.... .. |+++..++..++. .+...+...|.+ +|+|+||+|++.+
T Consensus 82 ~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 82 KRRLTFIECPNDINAMIDIAKVADLVLLLIDASFGFEMETF-EFLNILQVHGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred CceEEEEeCCchHHHHHHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHHcCCCeEEEEEeccccCCc
Confidence 346899999995411 11 6788877766553 344444444555 5679999999854
No 211
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.80 E-value=3.3e-05 Score=82.96 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=29.2
Q ss_pred EEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEE
Q 003736 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (799)
Q Consensus 50 IvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 86 (799)
|++||.+|+|||||+|+|+|...-...-..||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5899999999999999999998633333567877744
No 212
>PRK00049 elongation factor Tu; Reviewed
Probab=97.80 E-value=2.9e-05 Score=88.01 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=63.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
-.|+++|..++|||||+++|++.. ...+.+ ....+. . .| ...++.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~---------------~~~~~~-~--------~d--~~~~E~-------- 57 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVL-AKKGGA---------------EAKAYD-Q--------ID--KAPEEK-------- 57 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhh-hhccCC---------------cccchh-h--------cc--CChHHH--------
Confidence 369999999999999999999852 011100 000000 0 00 000111
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCC-----------Ce---EecCCCCCChHHHHHHHHHcCCCCCcEE-E
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-----------PV---VTPANSDLANSDALQIAGIADPDGYRTI-G 192 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~dal~la~~~dp~g~rtI-g 192 (799)
..+++-+.....+.. +...++||||||..+- .. |+++...+..++ .+++..+...+.+.| +
T Consensus 58 --~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~g~p~iiV 133 (396)
T PRK00049 58 --ARGITINTAHVEYET-EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQVGVPYIVV 133 (396)
T ss_pred --hcCeEEeeeEEEEcC-CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHcCCCEEEE
Confidence 123333333333322 2346899999996421 00 788887766554 233333444566765 6
Q ss_pred EeecCCCCC
Q 003736 193 IITKLDIMD 201 (799)
Q Consensus 193 VlTK~Dl~~ 201 (799)
|+||+|+++
T Consensus 134 vvNK~D~~~ 142 (396)
T PRK00049 134 FLNKCDMVD 142 (396)
T ss_pred EEeecCCcc
Confidence 899999985
No 213
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.80 E-value=3.5e-05 Score=83.54 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=26.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
-.+|+|||.+|+|||||+|+|+|...+.++.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~ 151 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGN 151 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCC
Confidence 3489999999999999999999987655544
No 214
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.80 E-value=2.2e-05 Score=83.82 Aligned_cols=42 Identities=31% Similarity=0.467 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccce
Q 003736 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (799)
Q Consensus 43 ~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p 84 (799)
...+.|.|+|||..|||||||+++|++..++|.+.-..|--|
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDp 215 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDP 215 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccc
Confidence 467999999999999999999999999999999887666555
No 215
>PLN03126 Elongation factor Tu; Provisional
Probab=97.79 E-value=4.1e-05 Score=88.55 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=66.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
-.|+++|..++|||||+++|++..- .+..+.+ ..+ ...|... ++
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~-----------~~~---------~~~D~~~--~E--------- 125 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAP-----------KKY---------DEIDAAP--EE--------- 125 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh-----hhccccc-----------ccc---------ccccCCh--hH---------
Confidence 3689999999999999999997531 0111111 000 0011110 00
Q ss_pred CCCCCccccceEEEEecCCccCEEEEeCCCCCCC-----------Ce---EecCCCCCChHHHHHHHHHcCCCCCc-EEE
Q 003736 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-----------PV---VTPANSDLANSDALQIAGIADPDGYR-TIG 192 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~dal~la~~~dp~g~r-tIg 192 (799)
...+++-+.....+... -..++|||+||..+- .. |++|...+..+. .+.+..+...|.+ .|.
T Consensus 126 -r~rGiTi~~~~~~~~~~-~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~gi~~iIv 202 (478)
T PLN03126 126 -RARGITINTATVEYETE-NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQVGVPNMVV 202 (478)
T ss_pred -HhCCeeEEEEEEEEecC-CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEE
Confidence 01233333333333332 337899999995431 11 889988877664 2333444444666 778
Q ss_pred EeecCCCCCC
Q 003736 193 IITKLDIMDR 202 (799)
Q Consensus 193 VlTK~Dl~~~ 202 (799)
|+||+|+++.
T Consensus 203 vvNK~Dl~~~ 212 (478)
T PLN03126 203 FLNKQDQVDD 212 (478)
T ss_pred EEecccccCH
Confidence 9999999863
No 216
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.78 E-value=4.7e-05 Score=91.47 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=35.1
Q ss_pred cCEEEEeCCCCCCCC-----------e---EecCCCCCChH--HHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVP-----------V---VTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~-----------~---V~~a~~dl~~~--dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..++||||||..+-. . |+++...+..+ +.+.+++.+. -.+.|.|+||+|+.+
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK~D~~~ 171 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNKMDLVD 171 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEeccccc
Confidence 478999999964310 0 88888776544 3344555442 146788999999985
No 217
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.78 E-value=3e-05 Score=87.90 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=65.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhcC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g 128 (799)
.|+++|..++|||||+++|++.- ...|.+ +...+. ..+....|.
T Consensus 14 ~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---------------~~~~~~-----------~~d~~~~E~--------- 57 (394)
T TIGR00485 14 NIGTIGHVDHGKTTLTAAITTVL-AKEGGA---------------AARAYD-----------QIDNAPEEK--------- 57 (394)
T ss_pred EEEEEeecCCCHHHHHHHHHhhH-HHhhcc---------------cccccc-----------cccCCHHHH---------
Confidence 69999999999999999998761 111110 000000 000001111
Q ss_pred CCCCccccceEEEEecCCccCEEEEeCCCCCCC-----------Ce---EecCCCCCChHHHHHHHHHcCCCCCcEE-EE
Q 003736 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-----------PV---VTPANSDLANSDALQIAGIADPDGYRTI-GI 193 (799)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~dal~la~~~dp~g~rtI-gV 193 (799)
..|++-+...+.+... ...++||||||..+- .. |+++...+..++ .+++..+...|.+.| .|
T Consensus 58 -~rG~Ti~~~~~~~~~~-~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~gi~~iIvv 134 (394)
T TIGR00485 58 -ARGITINTAHVEYETE-NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQVGVPYIVVF 134 (394)
T ss_pred -hcCcceeeEEEEEcCC-CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEE
Confidence 1344444555555433 236899999996432 01 788887666554 234444444466655 68
Q ss_pred eecCCCCCC
Q 003736 194 ITKLDIMDR 202 (799)
Q Consensus 194 lTK~Dl~~~ 202 (799)
+||+|+++.
T Consensus 135 vNK~Dl~~~ 143 (394)
T TIGR00485 135 LNKCDMVDD 143 (394)
T ss_pred EEecccCCH
Confidence 999999863
No 218
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.78 E-value=0.00011 Score=73.26 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~ 75 (799)
.+.|+++|.+|+|||||+|+|++..+..+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~ 143 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKV 143 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceee
Confidence 35899999999999999999999875333
No 219
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.77 E-value=0.001 Score=73.36 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
-..|.|+|.++||||||+++|...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998765
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=97.77 E-value=3.4e-05 Score=87.44 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=63.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhcC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g 128 (799)
.|+++|...+|||||+++|+|.. ...+.+ ....|. . .|. ..++.
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~~~-~~~g~~---------------~~~~~~-~--------~d~--~~~E~--------- 57 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKVL-AERGLN---------------QAKDYD-S--------IDA--APEEK--------- 57 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHhhh-hhhccc---------------cccchh-h--------hcC--CHHHH---------
Confidence 69999999999999999999752 111100 000000 0 000 00111
Q ss_pred CCCCccccceEEEEecCCccCEEEEeCCCCCCC-----------Ce---EecCCCCCChHHHHHHHHHcCCCCCc-EEEE
Q 003736 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-----------PV---VTPANSDLANSDALQIAGIADPDGYR-TIGI 193 (799)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~dal~la~~~dp~g~r-tIgV 193 (799)
..+++-+........ +...++||||||..+- .. |+++...+..++ .+.+..+...|.+ .|.|
T Consensus 58 -~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~g~~~~Ivv 134 (394)
T PRK12736 58 -ERGITINTAHVEYET-EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQVGVPYLVVF 134 (394)
T ss_pred -hcCccEEEEeeEecC-CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHcCCCEEEEE
Confidence 123343443333332 2347899999994321 01 888887776554 2333334444666 5788
Q ss_pred eecCCCCC
Q 003736 194 ITKLDIMD 201 (799)
Q Consensus 194 lTK~Dl~~ 201 (799)
+||+|+++
T Consensus 135 iNK~D~~~ 142 (394)
T PRK12736 135 LNKVDLVD 142 (394)
T ss_pred EEecCCcc
Confidence 99999984
No 221
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.77 E-value=0.00044 Score=69.73 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|+.++|||||++.+++..|
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f 25 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF 25 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999988765
No 222
>PTZ00258 GTP-binding protein; Provisional
Probab=97.76 E-value=6.8e-05 Score=84.13 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=33.7
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEE
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQ 88 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~ 88 (799)
..-.+|++||.+|+|||||+|+|+|........-.||+-|..-.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR 62 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE
Confidence 34458999999999999999999999753333356787775543
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=97.75 E-value=4.8e-05 Score=86.31 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=35.3
Q ss_pred cCEEEEeCCCCCCC-----------Ce---EecCCCCCChHHHHHHHHHcCCCCCcEE-EEeecCCCCC
Q 003736 148 LDITLVDLPGITKV-----------PV---VTPANSDLANSDALQIAGIADPDGYRTI-GIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~dal~la~~~dp~g~rtI-gVlTK~Dl~~ 201 (799)
..++||||||..+- .. |+++...+..++. +.+..+...|.+.| .|+||+|+++
T Consensus 75 ~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred cEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHHHcCCCeEEEEEEecCCcc
Confidence 46899999996321 00 7888877766542 34444444567766 5799999985
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.75 E-value=2.2e-05 Score=81.60 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003736 50 VAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 50 IvVvG~qSsGKSSllnaL~G~ 70 (799)
|+++|..++|||||+++|+..
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~ 22 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYL 22 (219)
T ss_pred EEEecCCCCChHHHHHHHHHH
Confidence 899999999999999999744
No 225
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.75 E-value=0.00011 Score=75.62 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=23.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
|.|+++|..+||||||++.|++..+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~ 25 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY 25 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999998864
No 226
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.74 E-value=0.00042 Score=69.97 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|+.++|||||++.|.+..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999985544
No 227
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.74 E-value=8e-05 Score=82.69 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=30.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCC-CccccceEE
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLV 86 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~-~~~Tr~p~~ 86 (799)
.+|++||.+|+|||||+|+|+|... .+++ ..||+-|..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~ 41 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNV 41 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceE
Confidence 5899999999999999999999974 4443 457777743
No 228
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.73 E-value=0.00018 Score=81.94 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+++|..++|||||+++|+|.
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCe
Confidence 6999999999999999999886
No 229
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.72 E-value=7.2e-05 Score=83.88 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhCCCCCC--CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccC
Q 003736 27 PLVNKLQDIFAQLGSQSTI--ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHL 104 (799)
Q Consensus 27 ~~i~kL~d~~~~~g~~~~i--~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~ 104 (799)
+-++-|..+...+..-..| .-+++.|||.+|+||||++|-++..++ -+.. .| -|+. .-+.
T Consensus 146 ~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqp-----Ya------FTTk-sL~v----- 207 (620)
T KOG1490|consen 146 SSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQP-----YA------FTTK-LLLV----- 207 (620)
T ss_pred chHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCC-----cc------cccc-hhhh-----
Confidence 3344444444444433434 446999999999999999998877653 0000 00 0100 0000
Q ss_pred CCCcccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe---------------------
Q 003736 105 PGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------------- 163 (799)
Q Consensus 105 ~g~~~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------------- 163 (799)
|. ..-....+.++|||||-+.|.
T Consensus 208 -GH-----------------------------------~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaV 251 (620)
T KOG1490|consen 208 -GH-----------------------------------LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAV 251 (620)
T ss_pred -hh-----------------------------------hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhh
Confidence 00 001133678999999998764
Q ss_pred --EecC--CCCCChHHHHHHHHHcCC--CCCcEEEEeecCCCCCCc
Q 003736 164 --VTPA--NSDLANSDALQIAGIADP--DGYRTIGIITKLDIMDRG 203 (799)
Q Consensus 164 --V~~a--~~dl~~~dal~la~~~dp--~g~rtIgVlTK~Dl~~~g 203 (799)
+++- .-+.+-.+-+++-..+.| ..+.+|.|+||+|++.+.
T Consensus 252 LYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred eeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 2221 123333344677777777 478999999999999753
No 230
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.72 E-value=6.7e-05 Score=86.93 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.3
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 44 TIELPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 44 ~i~lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.-....|+|||..++|||||+++|+...
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc
Confidence 3456799999999999999999998763
No 231
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.70 E-value=7.5e-05 Score=69.11 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|..++|||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 699999999999999999999975
No 232
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.70 E-value=0.00044 Score=70.38 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-+|+|||+.++|||||+..+.+-.|
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~ 31 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGST 31 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4899999999999999999998654
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.69 E-value=0.00017 Score=84.51 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=38.1
Q ss_pred CEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 149 DITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
.++|+||||..+-.. |+++..++..+. .++.+.....+.+.|+|+||+|+...
T Consensus 80 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT-RKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred EEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH-HHHHHHHHhcCCCEEEEEECCccccc
Confidence 689999999753210 788887776543 34445555568899999999998753
No 234
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.68 E-value=0.00068 Score=67.72 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|+.++|||||+..+++..|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f 26 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998755
No 235
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.67 E-value=0.00012 Score=86.94 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=37.1
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..++||||||..+-.. |++|..+...+.. .+++.+...+.+.|+|+||+|+.+.
T Consensus 64 ~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~-~~l~~a~~~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 64 TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTR-FVLKKALELGLKPIVVINKIDRPSA 131 (594)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHH-HHHHHHHHCCCCEEEEEECCCCCCc
Confidence 3789999999754210 7888877665542 2333333357889999999999653
No 236
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.65 E-value=7.6e-05 Score=78.02 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=29.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC-CCCCCCCC--ccccc
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGR-DFLPRGND--ICTRR 83 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~-~~lP~~~~--~~Tr~ 83 (799)
.+-.|+|+|.+++|||+|||.|+|. +.++++.+ .||+-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g 46 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG 46 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc
Confidence 3447999999999999999999999 23476665 56664
No 237
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.64 E-value=0.00021 Score=87.15 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=36.6
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..+.|+||||..+-.. |+++...+..++ ..+.+.+...+.+.|+|+||+|...
T Consensus 86 ~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 86 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred eEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHHcCCCEEEEEEChhccc
Confidence 4689999999865211 778877665443 3344444345677899999999874
No 238
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.61 E-value=0.00025 Score=80.87 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~ 70 (799)
-.|+|+|.-.+|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 36999999999999999999885
No 239
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.59 E-value=0.00062 Score=70.07 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=23.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-+|+|+|..|+|||||+++|++..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4899999999999999999999975
No 240
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.59 E-value=0.00015 Score=79.87 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
++.|||.+|+|||||+|+|+|...
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc
Confidence 599999999999999999999975
No 241
>PRK10218 GTP-binding protein; Provisional
Probab=97.55 E-value=0.00035 Score=83.02 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=36.7
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..+.|+||||..+-.. |+++......+.. ..++.+...+.+.|+|+||+|+..
T Consensus 68 ~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHHcCCCEEEEEECcCCCC
Confidence 3789999999764311 7888877665542 223333335788999999999874
No 242
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.55 E-value=0.0014 Score=68.97 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.-.|+|||+.++|||||+..+++..|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F 38 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY 38 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34799999999999999999998865
No 243
>PRK13796 GTPase YqeH; Provisional
Probab=97.55 E-value=8e-05 Score=83.52 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|||.+|+|||||+|+|++..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 79999999999999999998763
No 244
>PTZ00416 elongation factor 2; Provisional
Probab=97.54 E-value=0.00014 Score=89.76 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=39.8
Q ss_pred CEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCC
Q 003736 149 DITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 200 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~ 200 (799)
.++||||||..+--. |+++..++..++. .+++.+...+.+.|+|+||+|+.
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHcCCCEEEEEEChhhh
Confidence 489999999764210 8899988887763 56666666678999999999997
No 245
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.53 E-value=0.0002 Score=88.68 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=39.5
Q ss_pred CEEEEeCCCCCCCC-----------e---EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCC
Q 003736 149 DITLVDLPGITKVP-----------V---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 200 (799)
Q Consensus 149 ~LtLVDlPGi~~~~-----------~---V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~ 200 (799)
.++||||||..+-- . |++|...+..+. ..+.+.+...+.++|+++||+|+.
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHHCCCCEEEEEECCccc
Confidence 57899999965421 0 889998888765 345666666788999999999998
No 246
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.53 E-value=0.0011 Score=72.47 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
.-..|+|+|.+++|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998875
No 247
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.51 E-value=0.00034 Score=85.40 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=66.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChh--HHHHHHHHhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS--EIRREIQAQT 123 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~--ei~~~i~~~~ 123 (799)
....|+|+|...+|||||+++|+... |..++. ..+ +....|+. |..+.|.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~-----~~g--------------~~~~~D~~~~E~~rgiT--- 70 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEE-----LAG--------------EQLALDFDEEEQARGIT--- 70 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchh-----hcC--------------cceecCccHHHHHhhhh---
Confidence 45679999999999999999997542 111110 000 00112222 2222221
Q ss_pred hhhcCCCCCccccceEEEEe-cCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCC
Q 003736 124 DKEAGGNKGVSDKQIRLKIF-SPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGY 188 (799)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~-~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~ 188 (799)
+....+.+... ...-..++||||||..+-.. |+++...+..+. ..+++.+...+.
T Consensus 71 ---------i~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~~~ 140 (731)
T PRK07560 71 ---------IKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRERV 140 (731)
T ss_pred ---------hhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHcCC
Confidence 11122223221 11223589999999865311 788887776554 234444333466
Q ss_pred cEEEEeecCCCC
Q 003736 189 RTIGIITKLDIM 200 (799)
Q Consensus 189 rtIgVlTK~Dl~ 200 (799)
+.|+|+||+|+.
T Consensus 141 ~~iv~iNK~D~~ 152 (731)
T PRK07560 141 KPVLFINKVDRL 152 (731)
T ss_pred CeEEEEECchhh
Confidence 789999999986
No 248
>PRK12288 GTPase RsgA; Reviewed
Probab=97.49 E-value=0.00013 Score=81.04 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
.+++||..|+|||||||+|+|...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 4899999999999999999998643
No 249
>PRK12289 GTPase RsgA; Reviewed
Probab=97.49 E-value=0.00015 Score=80.64 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~ 76 (799)
.++|+|..|+|||||||+|+|...+.++
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 5899999999999999999987643333
No 250
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.49 E-value=0.00093 Score=68.76 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
+|+|||+.++|||||++.+++..|.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~ 26 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL 26 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6999999999999999999998763
No 251
>PRK13351 elongation factor G; Reviewed
Probab=97.48 E-value=0.00036 Score=84.74 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=38.2
Q ss_pred cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..+.||||||..+-.. |+++......+. ..+.+.+...+.+.+.|+||+|+...
T Consensus 73 ~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 73 HRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQT-ETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 3789999999864211 778877665443 34444555568899999999998853
No 252
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.45 E-value=0.00013 Score=81.78 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
..++|||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999874
No 253
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.44 E-value=0.00027 Score=68.83 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|+|||+.++|||||++.+.+..|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~ 24 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF 24 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999998865
No 254
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.44 E-value=0.00048 Score=79.31 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.|+++|.-..|||||+.||+|..
T Consensus 36 ~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 36 NIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEccCCCCHHHHHHHHhCCC
Confidence 69999999999999999999985
No 255
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.44 E-value=8.6e-05 Score=73.29 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..++++|..++|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5899999999999999999999853
No 256
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.43 E-value=0.0023 Score=64.33 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|+|+|+.++|||||+..++.-.|
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f 26 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF 26 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 699999999999999999997765
No 257
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.43 E-value=0.0015 Score=64.27 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||+..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 699999999999999998877655
No 258
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.42 E-value=0.00046 Score=80.94 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=35.8
Q ss_pred cCEEEEeCCCCCCCC--e------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 148 LDITLVDLPGITKVP--V------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~--~------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
..+.|+||||...-. + |+++...+..+. ..+.+.....+.++|.|+||+|+..
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT-RKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHhcCCCEEEEEECccccC
Confidence 378999999975321 0 778877665442 2333333345789999999999864
No 259
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.41 E-value=0.00085 Score=65.61 Aligned_cols=44 Identities=30% Similarity=0.356 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 24 ~l~~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+-.+.+.|.+.+.. .-...++++||.+++||||++|+|.+...
T Consensus 83 gi~~L~~~l~~~~~~-----~~~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 83 GTKILRRTIKELAKI-----DGKEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred cHHHHHHHHHHHHhh-----cCCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344566666655432 11345789999999999999999998753
No 260
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.40 E-value=0.00063 Score=71.08 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++.+++..|
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f 26 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY 26 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998875
No 261
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.36 E-value=0.00029 Score=80.75 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=39.9
Q ss_pred CccccceEEEEecCCccCEEEEeCCCCCCC----------C-e---EecCCCC---CChHH--HHHHHHHcCCCCCcEEE
Q 003736 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKV----------P-V---VTPANSD---LANSD--ALQIAGIADPDGYRTIG 192 (799)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~----------~-~---V~~a~~d---l~~~d--al~la~~~dp~g~rtIg 192 (799)
+++-+.....+...+ ..++|+||||..+- . . |+++... ...+. -+.+++.+. ..+.|+
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIV 146 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIV 146 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEE
Confidence 444454444554443 37899999994321 1 1 7788765 33222 233454443 247889
Q ss_pred EeecCCCCC
Q 003736 193 IITKLDIMD 201 (799)
Q Consensus 193 VlTK~Dl~~ 201 (799)
|+||+|+.+
T Consensus 147 viNK~Dl~~ 155 (426)
T TIGR00483 147 AINKMDSVN 155 (426)
T ss_pred EEEChhccC
Confidence 999999975
No 262
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.35 E-value=0.0025 Score=64.67 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..|+|||+.++|||||+..++...|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f 28 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF 28 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3799999999999999999998765
No 263
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.34 E-value=0.00082 Score=67.58 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|+|+.++|||||++.+++..|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f 26 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY 26 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998865
No 264
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00047 Score=75.93 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|.|||+.+.|||||+|.|.+.++
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l 46 (366)
T KOG2655|consen 23 TLMVVGESGLGKSTFINSLFLTDL 46 (366)
T ss_pred EEEEecCCCccHHHHHHHHHhhhc
Confidence 799999999999999999998865
No 265
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.31 E-value=0.0054 Score=63.26 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=20.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHH-hCC
Q 003736 45 IELPQVAVVGSQSSGKSSVLEAL-VGR 70 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL-~G~ 70 (799)
...-+|+++|..++|||||++.+ .|.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~ 33 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGE 33 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCC
Confidence 34458999999999999999754 444
No 266
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.002 Score=74.58 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=49.8
Q ss_pred CEEEEeCCCCCCCCe-------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHHh
Q 003736 149 DITLVDLPGITKVPV-------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNL 209 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~-------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~ 209 (799)
+++||||||...... |++++.. ..+...+++.+.. ....-+|+||+|.......+.++
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv 506 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSV 506 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHH
Confidence 899999999864210 7777654 3333344444443 23567999999998776555555
Q ss_pred hhccccccccceEEEEcCChhhhh
Q 003736 210 LLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 210 l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
+.. ..+.+.|++.-.+-++|+.
T Consensus 507 ~~~--~~LPI~yvt~GQ~VPeDL~ 528 (559)
T PRK12727 507 VVD--HQMPITWVTDGQRVPDDLH 528 (559)
T ss_pred HHH--hCCCEEEEeCCCCchhhhh
Confidence 532 3355667766555555553
No 267
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.31 E-value=0.00033 Score=74.28 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..++++|..++|||||+|+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4799999999999999999999854
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.30 E-value=0.0004 Score=78.59 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEE
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 86 (799)
.+|++||.+|+|||||+|+|++..+....-..||+-|.+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999997633334558887865
No 269
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0018 Score=64.89 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 44 TIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 44 ~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+..-.||++|+||+||+||++...=-.|
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~f 47 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKF 47 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhh
Confidence 34456899999999999999999875544
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00029 Score=78.68 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=48.6
Q ss_pred CEEEEeCCCCCCCCe--------------------EecCCCCCChHH-HHHHHHHcC--CC---CCcEEEEeecCCCCCC
Q 003736 149 DITLVDLPGITKVPV--------------------VTPANSDLANSD-ALQIAGIAD--PD---GYRTIGIITKLDIMDR 202 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~d-al~la~~~d--p~---g~rtIgVlTK~Dl~~~ 202 (799)
+++||||||...... |++|......-+ +++-.+... |. ..-+=+|+||.|-...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 899999999884321 777776554432 222222221 11 1235678899999887
Q ss_pred chhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 203 GTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 203 g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
.-.+.+++.. ..+.+.|++.-.+-++|+.
T Consensus 297 ~G~~l~~~~~--~~lPi~yvt~Gq~VPedl~ 325 (374)
T PRK14722 297 LGGVLDTVIR--YKLPVHYVSTGQKVPENLY 325 (374)
T ss_pred ccHHHHHHHH--HCcCeEEEecCCCCCcccc
Confidence 6555555432 2455667776666666654
No 271
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.00073 Score=75.47 Aligned_cols=154 Identities=13% Similarity=0.142 Sum_probs=87.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCC---cccccccccCCCC---cccChhHHHHHHHH
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT---DEEYGEFLHLPGK---RFYDFSEIRREIQA 121 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~---~~~~~~~~~~~g~---~~~d~~ei~~~i~~ 121 (799)
..|++||..++||||++-.|.+. +.-.+. ....+.. .+-+ .+.|..+....|. ...+..++.+.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~~Gk-----kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGKKK-----TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHHcCC-----cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence 47899999999999999999864 221111 1111111 0111 1122222111121 12355666666543
Q ss_pred hhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHH
Q 003736 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAG 181 (799)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~ 181 (799)
.... .-.+++||||||-..... |++|. ....++...++
T Consensus 315 lk~~--------------------~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT--tk~~d~~~i~~ 372 (436)
T PRK11889 315 FKEE--------------------ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIIT 372 (436)
T ss_pred HHhc--------------------cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc--cChHHHHHHHH
Confidence 3210 012899999999876422 55554 33456667777
Q ss_pred HcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 182 IADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 182 ~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
.+.. -.-+=+|+||.|-...+-.+.+++.. ..+.+.|++.-.+-++||.
T Consensus 373 ~F~~-~~idglI~TKLDET~k~G~iLni~~~--~~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 373 NFKD-IHIDGIVFTKFDETASSGELLKIPAV--SSAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred HhcC-CCCCEEEEEcccCCCCccHHHHHHHH--HCcCEEEEeCCCCCCcchh
Confidence 7775 33466899999999876665555433 3445667777666666654
No 272
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0016 Score=78.44 Aligned_cols=151 Identities=24% Similarity=0.285 Sum_probs=87.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCC--C------cccccccccCCCCcccChhHHHHHHH
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK--T------DEEYGEFLHLPGKRFYDFSEIRREIQ 120 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~--~------~~~~~~~~~~~g~~~~d~~ei~~~i~ 120 (799)
.|++||.+++||||++-.|.+.- ...... ... -+.... + -..|++....+-....|.+++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~---kkV---~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARC-VAREGA---DQL---ALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhH-HHHcCC---CeE---EEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 57899999999999999999973 122110 011 111111 1 12233333333333346666666665
Q ss_pred HhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCC----------------e----EecCCCCCChHHHHHHH
Q 003736 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP----------------V----VTPANSDLANSDALQIA 180 (799)
Q Consensus 121 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~----------------~----V~~a~~dl~~~dal~la 180 (799)
...+ -+++||||||..... . |+++.. ...+..+++
T Consensus 260 ~~~~-----------------------~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~--~~~~l~~i~ 314 (767)
T PRK14723 260 ALGD-----------------------KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS--HGDTLNEVV 314 (767)
T ss_pred HhcC-----------------------CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC--cHHHHHHHH
Confidence 3221 179999999965421 1 777764 233333455
Q ss_pred HHcCCCC--CcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 181 GIADPDG--YRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 181 ~~~dp~g--~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
+.+.... .-+=+|+||.|-...+-.+.+++... .+.+.|++.--+-++|+.
T Consensus 315 ~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~--~lPI~yit~GQ~VPdDL~ 367 (767)
T PRK14723 315 HAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRH--RLPVHYVSTGQKVPEHLE 367 (767)
T ss_pred HHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHH--CCCeEEEecCCCChhhcc
Confidence 5554311 23567899999998776666555332 355677777667666764
No 273
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.24 E-value=0.0012 Score=72.36 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.|.|||..++||||++|.|+|..
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~ 47 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTS 47 (373)
T ss_pred EEEEecCCCCchhHHHHhhhHhh
Confidence 79999999999999999999984
No 274
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0015 Score=74.18 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=81.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC---CCCCCccccceEEEEeccCCC------cccccccccCCCCcccChhHHHHHH
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL---PRGNDICTRRPLVLQLLQTKT------DEEYGEFLHLPGKRFYDFSEIRREI 119 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l---P~~~~~~Tr~p~~~~l~~~~~------~~~~~~~~~~~g~~~~d~~ei~~~i 119 (799)
.|++||..++||||++..|.|.-++ +...+..| ..+.+ ...|+.....+-....+..++...+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~--------~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al 264 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLT--------TDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML 264 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe--------cCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH
Confidence 6999999999999999999886211 11111111 11111 1122222222222223334433332
Q ss_pred HHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHH
Q 003736 120 QAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------------VTPANSDLANSDALQI 179 (799)
Q Consensus 120 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~l 179 (799)
.... -.+++||||+|...... |++|+.. ..+..++
T Consensus 265 ~~l~-----------------------~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~ 319 (420)
T PRK14721 265 HELR-----------------------GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEV 319 (420)
T ss_pred HHhc-----------------------CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHH
Confidence 2111 12789999999886311 6676643 3344455
Q ss_pred HHHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 180 AGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 180 a~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
++.+... .-+=+|+||.|-...+-.+.+++.. ..+.+.|++.-.+-++|+.
T Consensus 320 ~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~~--~~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 320 ISAYQGH-GIHGCIITKVDEAASLGIALDAVIR--RKLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred HHHhcCC-CCCEEEEEeeeCCCCccHHHHHHHH--hCCCEEEEECCCCchhhhh
Confidence 6666543 3356789999998876655555433 2345566665555555553
No 275
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.21 E-value=0.0022 Score=72.91 Aligned_cols=58 Identities=29% Similarity=0.166 Sum_probs=40.9
Q ss_pred CEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHH
Q 003736 149 DITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
+++||||||...... |++|.. .+++...++.+......+-.|+||.|-..++-.+..
T Consensus 184 DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD~~argG~aLs 260 (429)
T TIGR01425 184 DIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI---GQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGALS 260 (429)
T ss_pred CEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc---ChhHHHHHHHHHhccCCcEEEEECccCCCCccHHhh
Confidence 899999999775421 666653 355566677766545678899999999877655443
Q ss_pred h
Q 003736 209 L 209 (799)
Q Consensus 209 ~ 209 (799)
+
T Consensus 261 ~ 261 (429)
T TIGR01425 261 A 261 (429)
T ss_pred h
Confidence 3
No 276
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.21 E-value=0.0019 Score=66.44 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.6
Q ss_pred EccCCCCHHHHHHHHhCCCC
Q 003736 53 VGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 53 vG~qSsGKSSllnaL~G~~~ 72 (799)
||+.++|||||++.+++-.|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f 20 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF 20 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC
Confidence 69999999999999986654
No 277
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.13 E-value=0.0036 Score=65.02 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-++|+||-+|+||||||-.|++-.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 489999999999999999998764
No 278
>PRK00098 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00074 Score=73.70 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.++++|..++|||||+|+|+|...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 699999999999999999999853
No 279
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.11 E-value=0.0029 Score=65.30 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 27 ~~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.+++.+..-+=..|.+ .-|.|||..+.||||++|.|....+
T Consensus 31 tI~~Qm~~k~mk~GF~-----FNIMVVgqSglgkstlinTlf~s~v 71 (336)
T KOG1547|consen 31 TIIEQMRKKTMKTGFD-----FNIMVVGQSGLGKSTLINTLFKSHV 71 (336)
T ss_pred HHHHHHHHHHHhccCc-----eEEEEEecCCCCchhhHHHHHHHHH
Confidence 3556555433334543 2699999999999999999987643
No 280
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.09 E-value=0.002 Score=65.15 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
+|+|||+.++|||||++.+++..|
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f 30 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCF 30 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 799999999999999999998865
No 281
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.08 E-value=0.01 Score=62.64 Aligned_cols=204 Identities=19% Similarity=0.251 Sum_probs=103.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCccccc------------c----cc-cCCCCc
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG------------E----FL-HLPGKR 108 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~------------~----~~-~~~g~~ 108 (799)
..+-|+|||--+|||+|++..|.+.-. -... .|-++.|-..-..-.|. + +. .-.|-.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~~-----ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AKKT-----PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hccC-----CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 345789999999999999999987521 1111 15555553221111111 1 00 011211
Q ss_pred -------ccChhHHHHHHHHhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCC------------------Ce
Q 003736 109 -------FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV------------------PV 163 (799)
Q Consensus 109 -------~~d~~ei~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~------------------~~ 163 (799)
.+.|+++...|+...+ ..+.+||||||=+.. |+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~----------------------~~~~~liDTPGQIE~FtWSAsGsIIte~lass~pt 149 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAE----------------------EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPT 149 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhc----------------------ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCe
Confidence 1235555555554432 126899999996643 11
Q ss_pred ----EecCC--CCCC--hHHHHHHHHHcCCCCCcEEEEeecCCCCCCch--hHHH---hhhccccccccceEEEEcCChh
Q 003736 164 ----VTPAN--SDLA--NSDALQIAGIADPDGYRTIGIITKLDIMDRGT--DARN---LLLGKVIPLRLGYVGVVNRSQE 230 (799)
Q Consensus 164 ----V~~a~--~dl~--~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~--~~~~---~l~~~~~~l~lgy~~V~nrsq~ 230 (799)
|++.- +.-+ -+..+--+..+-...-++|.|+||+|+.+.+- +|.. ..+.-......+|+.-..||
T Consensus 150 vv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~S-- 227 (366)
T KOG1532|consen 150 VVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRS-- 227 (366)
T ss_pred EEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhh--
Confidence 33221 1111 12223334444556788999999999998642 3431 00000001222333211111
Q ss_pred hhhhhhhHHHHHHHHHhhccCCCcc-cccccCCChhHHHHHHHHHHHHHHHhhccChHHH
Q 003736 231 DIMFNRSIKDALVAEEKFFRSRPVY-NGLADRCGVPQLAKKLNQILVQHIKAILPGLKSR 289 (799)
Q Consensus 231 d~~~~~si~ea~~~E~~FF~~~~~~-~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~ 289 (799)
-++ .-++|+++-... .+...+.|...+...+.+.+.+.-...-|.+...
T Consensus 228 ---------mSL-~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp~~Ek~ 277 (366)
T KOG1532|consen 228 ---------MSL-MLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKPEYEKK 277 (366)
T ss_pred ---------HHH-HHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111 123455542111 2223578888888888888877777766665433
No 282
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.07 E-value=0.0015 Score=65.11 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=67.3
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
..-..|||+|.+++||+|++.+|+-... +.-....+..- +. ++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s-------------~k------~k----------------- 50 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVS-------------GK------GK----------------- 50 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeeccccccc-------------cc------cc-----------------
Confidence 4456899999999999999999998852 22111111000 00 00
Q ss_pred hhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCC-Cc
Q 003736 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDG-YR 189 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g-~r 189 (799)
....++-+.-.++++.. ..+.|+||||=-+-.. +++++.+... .|.++...+.-.. .+
T Consensus 51 ----r~tTva~D~g~~~~~~~--~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~ip 123 (187)
T COG2229 51 ----RPTTVAMDFGSIELDED--TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNPIP 123 (187)
T ss_pred ----cceeEeecccceEEcCc--ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccCCC
Confidence 00112222223333331 2689999999654311 5666665555 5555555444444 88
Q ss_pred EEEEeecCCCCCC
Q 003736 190 TIGIITKLDIMDR 202 (799)
Q Consensus 190 tIgVlTK~Dl~~~ 202 (799)
.+..+||.|+.+.
T Consensus 124 ~vVa~NK~DL~~a 136 (187)
T COG2229 124 VVVAINKQDLFDA 136 (187)
T ss_pred EEEEeeccccCCC
Confidence 9999999999875
No 283
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.07 E-value=0.00088 Score=67.50 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-|.|+++|..+|||++|+..|+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~ 28 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT 28 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc
Confidence 47899999999999999999987743
No 284
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.06 E-value=0.001 Score=76.65 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+++|...+|||||+++|+-.
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~~ 30 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYK 30 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 285
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.04 E-value=0.00091 Score=72.60 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
..++++|..++|||||+|+|+|....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhc
Confidence 47999999999999999999998643
No 286
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.93 E-value=0.0049 Score=67.90 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=44.5
Q ss_pred CEEEEeCCCCCCC----------------------Ce----EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 149 DITLVDLPGITKV----------------------PV----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 149 ~LtLVDlPGi~~~----------------------~~----V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
+++||||||.... |. |++|.. .++++.-++.....-.-+-.|+||.|-...
T Consensus 198 D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~~~~giIlTKlD~t~~ 274 (318)
T PRK10416 198 DVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAVGLTGIILTKLDGTAK 274 (318)
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEEECCCCCCC
Confidence 8999999998642 11 667763 344444455554333456789999998877
Q ss_pred chhHHHhhhccccccccceEEE
Q 003736 203 GTDARNLLLGKVIPLRLGYVGV 224 (799)
Q Consensus 203 g~~~~~~l~~~~~~l~lgy~~V 224 (799)
+..+.+++.. ..+.+-|+++
T Consensus 275 ~G~~l~~~~~--~~~Pi~~v~~ 294 (318)
T PRK10416 275 GGVVFAIADE--LGIPIKFIGV 294 (318)
T ss_pred ccHHHHHHHH--HCCCEEEEeC
Confidence 6555555422 2445566664
No 287
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.0065 Score=69.54 Aligned_cols=152 Identities=24% Similarity=0.260 Sum_probs=80.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCC------cccccccccCCCCcccChhHHHHHHHHh
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT------DEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~------~~~~~~~~~~~g~~~~d~~ei~~~i~~~ 122 (799)
.|++||..++||||++-.|.+.-. ....+ .....+..- +.+ ...|+.....+-....+..++...+...
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~-~~~~g---~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYA-LLYGK---KKVALITLD-TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HhcCC---CeEEEEECC-ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence 689999999999999999876521 01111 112122110 000 1122222222222223334444444321
Q ss_pred hhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe---------------------EecCCCCCChHHHHHHHH
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV---------------------VTPANSDLANSDALQIAG 181 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~---------------------V~~a~~dl~~~dal~la~ 181 (799)
. -.+++||||||...... |++++. ...+..++++
T Consensus 298 ~-----------------------~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~ 352 (424)
T PRK05703 298 R-----------------------DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYK 352 (424)
T ss_pred C-----------------------CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHH
Confidence 1 13899999999875431 555543 2344445566
Q ss_pred HcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 182 IADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 182 ~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
.+...+. .=+|+||+|-........+++... .+.+.|++.-.+-+.|+.
T Consensus 353 ~f~~~~~-~~vI~TKlDet~~~G~i~~~~~~~--~lPv~yit~Gq~VpdDl~ 401 (424)
T PRK05703 353 HFSRLPL-DGLIFTKLDETSSLGSILSLLIES--GLPISYLTNGQRVPDDIK 401 (424)
T ss_pred HhCCCCC-CEEEEecccccccccHHHHHHHHH--CCCEEEEeCCCCChhhhh
Confidence 6664442 458899999987655555555433 334556665555455543
No 288
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.91 E-value=0.0056 Score=61.30 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
--+|+++|-++|||||+|+.|....
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~ 38 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGE 38 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSS
T ss_pred EEEEEEECCCccchHHHHHHhhhcc
Confidence 3489999999999999999998764
No 289
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.85 E-value=0.0024 Score=68.64 Aligned_cols=154 Identities=13% Similarity=0.138 Sum_probs=85.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCC---cccccccccCCCC---cccChhHHHHHHH
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT---DEEYGEFLHLPGK---RFYDFSEIRREIQ 120 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~---~~~~~~~~~~~g~---~~~d~~ei~~~i~ 120 (799)
.+.|+++|..++||||++..|.+. +...+. ....+..- ..+ ...|..+....+. ...+.+++.+.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~~-----~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~ 147 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FHGKKK-----TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALT 147 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHHcCC-----eEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHH
Confidence 369999999999999999999876 222111 11111111 101 1122222111111 1134445554443
Q ss_pred HhhhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHH
Q 003736 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------------VTPANSDLANSDALQIA 180 (799)
Q Consensus 121 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la 180 (799)
..... .-.+++||||||-..... |++|+ ...+++...+
T Consensus 148 ~l~~~--------------------~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~--~~~~d~~~~~ 205 (270)
T PRK06731 148 YFKEE--------------------ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEII 205 (270)
T ss_pred HHHhc--------------------CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCc--cCHHHHHHHH
Confidence 22110 012899999999875321 55554 2345666778
Q ss_pred HHcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhh
Q 003736 181 GIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 232 (799)
Q Consensus 181 ~~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~ 232 (799)
+.+.. -.-.=.|+||.|-...+-.+.++... ..+.+.|++.-.+-++|+
T Consensus 206 ~~f~~-~~~~~~I~TKlDet~~~G~~l~~~~~--~~~Pi~~it~Gq~vp~di 254 (270)
T PRK06731 206 TNFKD-IHIDGIVFTKFDETASSGELLKIPAV--SSAPIVLMTDGQDVKKNI 254 (270)
T ss_pred HHhCC-CCCCEEEEEeecCCCCccHHHHHHHH--HCcCEEEEeCCCCCCcch
Confidence 88776 34466789999999876655554432 234556666655555554
No 290
>PRK12740 elongation factor G; Reviewed
Probab=96.84 E-value=0.0018 Score=78.55 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=38.5
Q ss_pred cCEEEEeCCCCCCCC--e------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 148 LDITLVDLPGITKVP--V------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 148 ~~LtLVDlPGi~~~~--~------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
..++||||||..+-. . |+++..+...+. ..+.+.+...+.+.|+|+||+|+...
T Consensus 60 ~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 60 HKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 379999999986421 0 778877765544 34444455568899999999999854
No 291
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0094 Score=66.55 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=82.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEecc--CCCcccccccccCCCC---cccChhHHHHHHHHhh
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQ--TKTDEEYGEFLHLPGK---RFYDFSEIRREIQAQT 123 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~--~~~~~~~~~~~~~~g~---~~~d~~ei~~~i~~~~ 123 (799)
.|+++|.+++||||++..|... +...+. .+..+..-. ....+.|..+....+. ...+..++.+.+....
T Consensus 208 ii~lvGptGvGKTTt~akLA~~-l~~~g~-----~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQ-LLKQNR-----TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHcCC-----eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 5789999999999999999854 322221 111222110 0001223332222221 2246666666665332
Q ss_pred hhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHHHc
Q 003736 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAGIA 183 (799)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~~~ 183 (799)
.. ..-+++||||||...... |.++ .....++..+++.+
T Consensus 282 ~~--------------------~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsa--g~~~~d~~~i~~~f 339 (407)
T PRK12726 282 YV--------------------NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSS--GMKSADVMTILPKL 339 (407)
T ss_pred hc--------------------CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCC--cccHHHHHHHHHhc
Confidence 10 012899999999864321 3333 23445656666666
Q ss_pred CCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhh
Q 003736 184 DPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 232 (799)
Q Consensus 184 dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~ 232 (799)
..- .-+-+|+||.|-...+-.+.++... ..+.+-|++.-.+-++|+
T Consensus 340 ~~l-~i~glI~TKLDET~~~G~~Lsv~~~--tglPIsylt~GQ~VpdDi 385 (407)
T PRK12726 340 AEI-PIDGFIITKMDETTRIGDLYTVMQE--TNLPVLYMTDGQNITENI 385 (407)
T ss_pred CcC-CCCEEEEEcccCCCCccHHHHHHHH--HCCCEEEEecCCCCCccc
Confidence 543 3456789999998776555544422 234455666544444443
No 292
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.75 E-value=0.0071 Score=59.12 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|.++|..++||||++..|...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999765
No 293
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.73 E-value=0.0057 Score=62.54 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCHHHHHH-HHhCCC
Q 003736 48 PQVAVVGSQSSGKSSVLE-ALVGRD 71 (799)
Q Consensus 48 PqIvVvG~qSsGKSSlln-aL~G~~ 71 (799)
-+|+|||+.++|||||+. .+.+..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~ 27 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKT 27 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC
Confidence 379999999999999996 555543
No 294
>PLN00023 GTP-binding protein; Provisional
Probab=96.70 E-value=0.0056 Score=67.08 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
....+|+|||+.++|||||++.|++..|
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F 46 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSS 46 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCc
Confidence 3445899999999999999999998865
No 295
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0061 Score=67.78 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=44.9
Q ss_pred CCccccceEEEEecCCccCEEEEeCCCCCCC-----------Ce---EecCCCC-------CChH--HHHHHHHHcCCCC
Q 003736 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKV-----------PV---VTPANSD-------LANS--DALQIAGIADPDG 187 (799)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-----------~~---V~~a~~d-------l~~~--dal~la~~~dp~g 187 (799)
.|++-+.-...+..+ ...+|++|+||...- .+ |++|+.+ ...| +-..+++.+. -
T Consensus 69 rGvTi~~~~~~fet~-k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i 145 (428)
T COG5256 69 RGVTIDVAHSKFETD-KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--I 145 (428)
T ss_pred cceEEEEEEEEeecC-CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--C
Confidence 344444444555554 448999999993321 00 8898877 4444 3355677664 5
Q ss_pred CcEEEEeecCCCCC
Q 003736 188 YRTIGIITKLDIMD 201 (799)
Q Consensus 188 ~rtIgVlTK~Dl~~ 201 (799)
...|.++||+|.++
T Consensus 146 ~~lIVavNKMD~v~ 159 (428)
T COG5256 146 KQLIVAVNKMDLVS 159 (428)
T ss_pred ceEEEEEEcccccc
Confidence 78999999999997
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0046 Score=69.73 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=83.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCC------cccccccccCCCCcccChhHHHHHHHHh
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT------DEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~------~~~~~~~~~~~g~~~~d~~ei~~~i~~~ 122 (799)
.|++||.+++||||++-.|... +.-....-- .....+.. .+-+ ...|++....|-....++.++...+...
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~-~~~~~~~~g-~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAI-YGINSDDKS-LNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHhhhccCC-CeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 6889999999999999888754 110100000 01111111 1111 1122222222211223455555544332
Q ss_pred hhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe---------------------EecCCCCCChHHHHHHHH
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV---------------------VTPANSDLANSDALQIAG 181 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~---------------------V~~a~~dl~~~dal~la~ 181 (799)
. -.+++||||||...... |++|+.. ..+..++.+
T Consensus 253 ~-----------------------~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~ 307 (388)
T PRK12723 253 K-----------------------DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFH 307 (388)
T ss_pred C-----------------------CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHH
Confidence 1 12899999999875321 7777665 333345556
Q ss_pred HcCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 182 IADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 182 ~~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
.+.+- .-+=.|+||.|-...+..+.+++.. ..+.+.|++.-.+-++|+.
T Consensus 308 ~~~~~-~~~~~I~TKlDet~~~G~~l~~~~~--~~~Pi~yit~Gq~vPeDl~ 356 (388)
T PRK12723 308 QFSPF-SYKTVIFTKLDETTCVGNLISLIYE--MRKEVSYVTDGQIVPHNIS 356 (388)
T ss_pred HhcCC-CCCEEEEEeccCCCcchHHHHHHHH--HCCCEEEEeCCCCChhhhh
Confidence 65432 2356799999999877666655533 2345567777666666654
No 297
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.69 E-value=0.0026 Score=73.25 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003736 49 QVAVVGSQSSGKSSVLEALVG 69 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G 69 (799)
.|+++|...+|||||+.+|+-
T Consensus 9 ni~i~Ghvd~GKSTL~g~Ll~ 29 (447)
T PLN00043 9 NIVVIGHVDSGKSTTTGHLIY 29 (447)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.69 E-value=0.0073 Score=62.23 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
..|.|+|+|..+||||||++.|+..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999865
No 299
>PRK10867 signal recognition particle protein; Provisional
Probab=96.68 E-value=0.0074 Score=68.99 Aligned_cols=71 Identities=27% Similarity=0.237 Sum_probs=45.5
Q ss_pred CEEEEeCCCCCCCC----------------e----EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHH
Q 003736 149 DITLVDLPGITKVP----------------V----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 149 ~LtLVDlPGi~~~~----------------~----V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
+++||||||..... . |+++. ..+++...++.+...-.-+-+|+||+|-...+..+..
T Consensus 185 DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~---~gq~av~~a~~F~~~~~i~giIlTKlD~~~rgG~als 261 (433)
T PRK10867 185 DVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM---TGQDAVNTAKAFNEALGLTGVILTKLDGDARGGAALS 261 (433)
T ss_pred CEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc---cHHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHH
Confidence 89999999976431 1 56653 4578888888777544557788999997766554544
Q ss_pred hhhccccccccceEEE
Q 003736 209 LLLGKVIPLRLGYVGV 224 (799)
Q Consensus 209 ~l~~~~~~l~lgy~~V 224 (799)
+..-. .+.+-|+++
T Consensus 262 i~~~~--~~PI~fig~ 275 (433)
T PRK10867 262 IRAVT--GKPIKFIGT 275 (433)
T ss_pred HHHHH--CcCEEEEeC
Confidence 33221 233445555
No 300
>PRK13768 GTPase; Provisional
Probab=96.68 E-value=0.0054 Score=65.38 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=18.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
-|+|.|..++||||+..++...
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 4788899999999998887643
No 301
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0065 Score=69.60 Aligned_cols=102 Identities=22% Similarity=0.343 Sum_probs=71.7
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhh
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~ 124 (799)
..-|-|+|+|.---||||||-.|-+-.+-+...|--|--. +
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI--------------G------------------------- 43 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI--------------G------------------------- 43 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe--------------e-------------------------
Confidence 4568999999999999999999988776555544333211 0
Q ss_pred hhcCCCCCccccceEEEEecC--CccCEEEEeCCCCCCCC--------e------EecCCCCCChH--HHHHHHHHcCCC
Q 003736 125 KEAGGNKGVSDKQIRLKIFSP--HVLDITLVDLPGITKVP--------V------VTPANSDLANS--DALQIAGIADPD 186 (799)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p--~~~~LtLVDlPGi~~~~--------~------V~~a~~dl~~~--dal~la~~~dp~ 186 (799)
.-.+..+ +.+.++|+||||--... + |++++..+..| +|...+|. .
T Consensus 44 --------------A~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~---a 106 (509)
T COG0532 44 --------------AYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKA---A 106 (509)
T ss_pred --------------eEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHH---C
Confidence 0011111 35689999999943211 0 89999888755 66777776 4
Q ss_pred CCcEEEEeecCCCCCC
Q 003736 187 GYRTIGIITKLDIMDR 202 (799)
Q Consensus 187 g~rtIgVlTK~Dl~~~ 202 (799)
+.++|..+||+|+.+.
T Consensus 107 ~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 107 GVPIVVAINKIDKPEA 122 (509)
T ss_pred CCCEEEEEecccCCCC
Confidence 7899999999999854
No 302
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.64 E-value=0.0019 Score=69.54 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
..|++|..++|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6788899999999999999985
No 303
>PRK14974 cell division protein FtsY; Provisional
Probab=96.63 E-value=0.0024 Score=70.70 Aligned_cols=71 Identities=25% Similarity=0.244 Sum_probs=46.7
Q ss_pred CEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHH
Q 003736 149 DITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
+++||||||...... |++|.. .++++..++.+...-.-.-.|+||+|....+..+.+
T Consensus 224 DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls 300 (336)
T PRK14974 224 DVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALS 300 (336)
T ss_pred CEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc---chhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHH
Confidence 799999999886432 666643 457777777665444457889999999887665554
Q ss_pred hhhccccccccceEEE
Q 003736 209 LLLGKVIPLRLGYVGV 224 (799)
Q Consensus 209 ~l~~~~~~l~lgy~~V 224 (799)
+... ..+.+-|+++
T Consensus 301 ~~~~--~~~Pi~~i~~ 314 (336)
T PRK14974 301 IAYV--IGKPILFLGV 314 (336)
T ss_pred HHHH--HCcCEEEEeC
Confidence 4422 2344556553
No 304
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.63 E-value=0.0076 Score=69.63 Aligned_cols=80 Identities=25% Similarity=0.221 Sum_probs=50.9
Q ss_pred CEEEEeCCCCCCCC----------------e----EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHH
Q 003736 149 DITLVDLPGITKVP----------------V----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 149 ~LtLVDlPGi~~~~----------------~----V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
+.++|||+|..... . |+++.... .+..+.++.+... ..+-+|+||+|-...+..+.+
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDet~~~G~~l~ 412 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDEAASLGGALD 412 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCCcccchHHHH
Confidence 68999999965421 1 55554333 3334566666654 356778999999877666655
Q ss_pred hhhccccccccceEEEEcCChhhhh
Q 003736 209 LLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 209 ~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
++.. ..+.+-|++.--+-++|+.
T Consensus 413 i~~~--~~lPI~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 413 VVIR--YKLPLHYVSNGQRVPEDLH 435 (484)
T ss_pred HHHH--HCCCeEEEecCCCChhhhc
Confidence 5433 3455678877666666654
No 305
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.57 E-value=0.044 Score=58.89 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
.-+.|-+.|.+++|||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 4568999999999999999998644
No 306
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.006 Score=69.03 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=50.6
Q ss_pred CEEEEeCCCCCCCCe-----------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchh
Q 003736 149 DITLVDLPGITKVPV-----------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD 205 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~-----------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~ 205 (799)
+++||||||...... |++|... ..+..+.++.+.. -.-+=.|+||.|-...+-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~-~~~~glIlTKLDEt~~~G~ 377 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYES-LNYRRILLTKLDEADFLGS 377 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcC-CCCCEEEEEcccCCCCccH
Confidence 889999999864211 5666543 3344455555543 2346689999999887665
Q ss_pred HHHhhhccccccccceEEEEcCChhhhh
Q 003736 206 ARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 206 ~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
+.+++.. ..+.+-|++.-.+-++|+.
T Consensus 378 il~i~~~--~~lPI~ylt~GQ~VPeDi~ 403 (432)
T PRK12724 378 FLELADT--YSKSFTYLSVGQEVPFDIL 403 (432)
T ss_pred HHHHHHH--HCCCEEEEecCCCCCCCHH
Confidence 5555432 3455667777666676654
No 307
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.45 E-value=0.017 Score=57.04 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~ 70 (799)
|.++++|..+||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999876
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.011 Score=71.12 Aligned_cols=121 Identities=18% Similarity=0.260 Sum_probs=75.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
.+--|.++|.--+|||||.|.|+=.. |...+ + +..+ .|-.+.|+.+.. ..|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~------G~v~----------~g~~~~D~~e~E------qeR 59 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-I------GEVH----------DGAATMDWMEQE------QER 59 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-C------cccc----------CCCccCCCcHHH------Hhc
Confidence 34469999999999999999987221 11111 0 0000 022233333211 111
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEE
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTI 191 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtI 191 (799)
+-.+....+.+...+ --.++||||||-.+-.. |++|..++..|.. .+.++++..+.+.|
T Consensus 60 ----GITI~saa~s~~~~~--~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~~vp~i 132 (697)
T COG0480 60 ----GITITSAATTLFWKG--DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKYGVPRI 132 (697)
T ss_pred ----CCEEeeeeeEEEEcC--ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhcCCCeE
Confidence 112334455555554 22689999999776421 8899988887763 46677777889999
Q ss_pred EEeecCCCCCC
Q 003736 192 GIITKLDIMDR 202 (799)
Q Consensus 192 gVlTK~Dl~~~ 202 (799)
.++||+|.+..
T Consensus 133 ~fiNKmDR~~a 143 (697)
T COG0480 133 LFVNKMDRLGA 143 (697)
T ss_pred EEEECcccccc
Confidence 99999999854
No 309
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.02 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~l 73 (799)
.|.|+|+.|+||+|+|-.-.|-.|-
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt 47 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFT 47 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccc
Confidence 7999999999999999999998873
No 310
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.34 E-value=0.011 Score=67.60 Aligned_cols=71 Identities=24% Similarity=0.184 Sum_probs=46.7
Q ss_pred CEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHH
Q 003736 149 DITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
+++||||||...... |+++... +++...++.+...-.-+-+|+||+|-...+-.+..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~a~~G~~ls 253 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALS 253 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---HHHHHHHHHHHhcCCCCEEEEecccCCCcccHHHH
Confidence 789999999776421 6777653 67777788776544456678999999877655544
Q ss_pred hhhccccccccceEEE
Q 003736 209 LLLGKVIPLRLGYVGV 224 (799)
Q Consensus 209 ~l~~~~~~l~lgy~~V 224 (799)
+..- ..+.+-|+++
T Consensus 254 ~~~~--~~~Pi~fig~ 267 (437)
T PRK00771 254 AVAE--TGAPIKFIGT 267 (437)
T ss_pred HHHH--HCcCEEEEec
Confidence 4322 2234455554
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.34 E-value=0.013 Score=58.31 Aligned_cols=57 Identities=32% Similarity=0.249 Sum_probs=35.4
Q ss_pred CEEEEeCCCCCCCC----------------e----EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHH
Q 003736 149 DITLVDLPGITKVP----------------V----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 149 ~LtLVDlPGi~~~~----------------~----V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
++++||+||..... . |+++.+ ..++++.++.+.....-+-+|+||+|...++....+
T Consensus 84 d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~---~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~ 160 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT---GQDAVNQAKAFNEALGITGVILTKLDGDARGGAALS 160 (173)
T ss_pred CEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhh
Confidence 78999999986321 1 666642 334445555543222247788899999877655443
No 312
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.011 Score=66.24 Aligned_cols=95 Identities=23% Similarity=0.336 Sum_probs=58.4
Q ss_pred CEEEEeCCCCCCC-----------Ce---EecCCCCCChHHHHHHHHHcCCCCC-cEEEEeecCCCCCCchhHHHhhhcc
Q 003736 149 DITLVDLPGITKV-----------PV---VTPANSDLANSDALQIAGIADPDGY-RTIGIITKLDIMDRGTDARNLLLGK 213 (799)
Q Consensus 149 ~LtLVDlPGi~~~-----------~~---V~~a~~dl~~~dal~la~~~dp~g~-rtIgVlTK~Dl~~~g~~~~~~l~~~ 213 (799)
.++|||.||.-+. +. |++++..+..+.. +.+..+|-.|. +-|.|+||+|+.++.. ....
T Consensus 51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtg-EhL~iLdllgi~~giivltk~D~~d~~r-~e~~---- 124 (447)
T COG3276 51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTG-EHLLILDLLGIKNGIIVLTKADRVDEAR-IEQK---- 124 (447)
T ss_pred ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhH-HHHHHHHhcCCCceEEEEeccccccHHH-HHHH----
Confidence 5899999996542 11 8999888887763 34444444454 4599999999997531 1000
Q ss_pred ccccccceEEEEcCChhhhhhhhhHHHHHHHHHhhccCCCcc-cccccCCChhHHHHHHHHHH
Q 003736 214 VIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVY-NGLADRCGVPQLAKKLNQIL 275 (799)
Q Consensus 214 ~~~l~lgy~~V~nrsq~d~~~~~si~ea~~~E~~FF~~~~~~-~~l~~~~Gi~~L~~~L~~~L 275 (799)
+++.+ .... |...+.+ .+.....||..|+.+|.+++
T Consensus 125 ------------------------i~~Il-~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 125 ------------------------IKQIL-ADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ------------------------HHHHH-hhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 11111 1111 3333444 34456789999999988875
No 313
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.27 E-value=0.13 Score=55.86 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 45 i~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
-....|.|+|.++|||||||+.|++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999886
No 314
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.25 E-value=0.0092 Score=66.58 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=29.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC-CccccceE
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~-~~~Tr~p~ 85 (799)
.+.+||-+|+|||||+|+|++...-+.+. ..||-.|.
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~ 41 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN 41 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc
Confidence 68899999999999999999997424433 55676663
No 315
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.15 E-value=0.024 Score=61.17 Aligned_cols=71 Identities=28% Similarity=0.339 Sum_probs=42.6
Q ss_pred CEEEEeCCCCCCC----------------------Ce----EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 003736 149 DITLVDLPGITKV----------------------PV----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 149 ~LtLVDlPGi~~~----------------------~~----V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~ 202 (799)
+++||||||.... +. |+++.. .++++..+..+...-..+=+|+||+|-...
T Consensus 156 D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 156 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAVGLTGIILTKLDGTAK 232 (272)
T ss_pred CEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEEccCCCCC
Confidence 8999999998742 11 677753 344444444443323356789999999877
Q ss_pred chhHHHhhhccccccccceEEE
Q 003736 203 GTDARNLLLGKVIPLRLGYVGV 224 (799)
Q Consensus 203 g~~~~~~l~~~~~~l~lgy~~V 224 (799)
+..+.++... ..+.+-|++.
T Consensus 233 ~G~~l~~~~~--~~~Pi~~~~~ 252 (272)
T TIGR00064 233 GGIILSIAYE--LKLPIKFIGV 252 (272)
T ss_pred ccHHHHHHHH--HCcCEEEEeC
Confidence 6555444332 1244455553
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.06 E-value=0.067 Score=56.68 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=20.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
.-+.|-|.|.+++|||||+++|.-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999754
No 317
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.072 Score=53.64 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|||+|+.++|||||+...+--+|
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F 30 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQF 30 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCcc
Confidence 699999999999999999988876
No 318
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=95.98 E-value=0.0069 Score=65.63 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=29.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccce
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p 84 (799)
.=+.|-+||-+|+||||++|+|+.-..-|-.--.||=-|
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdP 57 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDP 57 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceecc
Confidence 445899999999999999999998864333334466555
No 319
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.95 E-value=0.031 Score=63.89 Aligned_cols=71 Identities=27% Similarity=0.249 Sum_probs=45.8
Q ss_pred CEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHHH
Q 003736 149 DITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 208 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~~ 208 (799)
+++||||||...... |+++. ..+++...|+.+...-.-+=.|+||+|-...+..+..
T Consensus 184 DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~~G~~ls 260 (428)
T TIGR00959 184 DVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALS 260 (428)
T ss_pred CEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHH
Confidence 799999999764321 66765 3578888888776544456778999997766554544
Q ss_pred hhhccccccccceEEE
Q 003736 209 LLLGKVIPLRLGYVGV 224 (799)
Q Consensus 209 ~l~~~~~~l~lgy~~V 224 (799)
+.... .+.+-|+++
T Consensus 261 i~~~~--~~PI~fi~~ 274 (428)
T TIGR00959 261 VRSVT--GKPIKFIGV 274 (428)
T ss_pred HHHHH--CcCEEEEeC
Confidence 43222 234455555
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.016 Score=64.15 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=28.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccce
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p 84 (799)
.+|.+||-+|+|||||+|||+.-+.-+-.--.||=-|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIeP 39 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEP 39 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccC
Confidence 4789999999999999999998874233334466554
No 321
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.93 E-value=0.0061 Score=67.31 Aligned_cols=29 Identities=38% Similarity=0.559 Sum_probs=26.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
++-|||-+|.|||||+|+|..+...|+|.
T Consensus 254 rvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 254 RVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred EeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 78999999999999999999998878877
No 322
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.84 E-value=0.0095 Score=67.71 Aligned_cols=26 Identities=46% Similarity=0.616 Sum_probs=23.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.-.|-+||.+|+||||+||+|+|...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 45788999999999999999999974
No 323
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.029 Score=64.21 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=65.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
..|.|-|+|.---||+|||.+|-+-.+--...|--|
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGIT-------------------------------------------- 187 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGIT-------------------------------------------- 187 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCcc--------------------------------------------
Confidence 346788889999999999999877665222222222
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCCCCC-------C------e-EecCCCCCChH--HHHHHHHHcCCCCCc
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV-------P------V-VTPANSDLANS--DALQIAGIADPDGYR 189 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~-------~------~-V~~a~~dl~~~--dal~la~~~dp~g~r 189 (799)
...=-..+.-|+.-.+||.||||---- . + |+.|.+.+..| +|.+.|+.. +.+
T Consensus 188 ---------QhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~Vp 255 (683)
T KOG1145|consen 188 ---------QHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NVP 255 (683)
T ss_pred ---------ceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CCC
Confidence 111112233344458999999995421 1 0 88888888755 566777764 578
Q ss_pred EEEEeecCCCC
Q 003736 190 TIGIITKLDIM 200 (799)
Q Consensus 190 tIgVlTK~Dl~ 200 (799)
.|..+||+|.-
T Consensus 256 iVvAinKiDkp 266 (683)
T KOG1145|consen 256 IVVAINKIDKP 266 (683)
T ss_pred EEEEEeccCCC
Confidence 99999999965
No 324
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.82 E-value=0.008 Score=61.60 Aligned_cols=74 Identities=24% Similarity=0.198 Sum_probs=42.4
Q ss_pred CEEEEeCCCCCCCCe--------------------EecCCCCCChHH-HHHHHHHcCCCCCcEEEEeecCCCCCCchhHH
Q 003736 149 DITLVDLPGITKVPV--------------------VTPANSDLANSD-ALQIAGIADPDGYRTIGIITKLDIMDRGTDAR 207 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~d-al~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~ 207 (799)
+++||||||...... |++|+......+ +....+.+.. +=.|+||.|-........
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~----~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGI----DGLILTKLDETARLGALL 160 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSST----CEEEEESTTSSSTTHHHH
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccC----ceEEEEeecCCCCcccce
Confidence 799999999876421 777765543322 2233333322 456799999988765555
Q ss_pred HhhhccccccccceEEEEcCC
Q 003736 208 NLLLGKVIPLRLGYVGVVNRS 228 (799)
Q Consensus 208 ~~l~~~~~~l~lgy~~V~nrs 228 (799)
+++.. ..+.+.|++.-.+-
T Consensus 161 ~~~~~--~~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 161 SLAYE--SGLPISYITTGQRV 179 (196)
T ss_dssp HHHHH--HTSEEEEEESSSST
T ss_pred eHHHH--hCCCeEEEECCCCh
Confidence 44432 23444555544344
No 325
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.66 E-value=0.023 Score=61.14 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
.-+++.|||-+|.|||||+||+--.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHH
Confidence 4579999999999999999998644
No 326
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.63 E-value=0.013 Score=66.62 Aligned_cols=41 Identities=41% Similarity=0.577 Sum_probs=32.6
Q ss_pred HHHHHHHhCCC-CCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 32 LQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 32 L~d~~~~~g~~-~~i~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
|+.....+|.. +.++.-.|+|+|+||||||||||.|.|-.|
T Consensus 21 l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 21 LDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred HHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 33333445653 677888999999999999999999999876
No 327
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.12 Score=59.43 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=39.6
Q ss_pred CEEEEeCCCCCCCC--e------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 149 DITLVDLPGITKVP--V------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 149 ~LtLVDlPGi~~~~--~------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
-|.||||||-.+-. + |++|+..+..|....+...+. .|-..|-|+||+|+-.
T Consensus 126 lLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 126 LLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-AGLAIIPVLNKIDLPS 191 (650)
T ss_pred EEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-cCCeEEEeeeccCCCC
Confidence 58899999976532 1 899999999887644443333 5788999999999964
No 328
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=95.58 E-value=0.069 Score=56.16 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=60.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC--ccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhh
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~ 126 (799)
+|+++|..+|||||..+-|.+. ..|.++. .+|-.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~v------------------------------------------ 37 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDV------------------------------------------ 37 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SE------------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCc------------------------------------------
Confidence 5899999999999999999877 3355441 011111
Q ss_pred cCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe-------------------EecCC-CCCCh-----HHHHHHHH
Q 003736 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-------------------VTPAN-SDLAN-----SDALQIAG 181 (799)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~-------------------V~~a~-~dl~~-----~dal~la~ 181 (799)
-.-.+.......+.++|.||-...-. |+++. .++.. .+.++.+.
T Consensus 38 -----------e~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~ 106 (232)
T PF04670_consen 38 -----------EKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALR 106 (232)
T ss_dssp -----------EEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHH
T ss_pred -----------eEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHH
Confidence 11112222234789999999764210 88888 44332 23366678
Q ss_pred HcCCCCCcEEEEeecCCCCCCc
Q 003736 182 IADPDGYRTIGIITKLDIMDRG 203 (799)
Q Consensus 182 ~~dp~g~rtIgVlTK~Dl~~~g 203 (799)
++.| +..+...+.|+|++.++
T Consensus 107 ~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 107 QYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHST-T-EEEEEEE-CCCS-HH
T ss_pred HhCC-CCeEEEEEeecccCCHH
Confidence 8888 67788999999998643
No 329
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.047 Score=55.87 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~ 70 (799)
+.|.++|-+.|||+||+=-|+--
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~g 61 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITG 61 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcC
Confidence 79999999999999998777544
No 330
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.42 E-value=0.078 Score=59.51 Aligned_cols=152 Identities=25% Similarity=0.294 Sum_probs=89.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCC------cccccccccCCCCcccChhHHHHHHHHh
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT------DEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~------~~~~~~~~~~~g~~~~d~~ei~~~i~~~ 122 (799)
-|++||+.++||+|.|=-|..+-++=-+ --+..++ ++ .+-+ -..|+.....|=+..+++.++..+|..-
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~---~~kVaiI-Tt-DtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKK---KKKVAII-TT-DTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhcc---CcceEEE-Ee-ccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 5899999999999999988776320000 1111111 11 0101 2345555555656667888888888765
Q ss_pred hhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHHH
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAGI 182 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~~ 182 (799)
.+. +++||||-|-..... |++|+.-. .|...+.+.
T Consensus 280 ~~~-----------------------d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~ 334 (407)
T COG1419 280 RDC-----------------------DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQ 334 (407)
T ss_pred hcC-----------------------CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHH
Confidence 532 899999999876532 56665432 333344555
Q ss_pred cCCCCCcEEEEeecCCCCCCchhHHHhhhccccccccceEEEEcCChhhhh
Q 003736 183 ADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 183 ~dp~g~rtIgVlTK~Dl~~~g~~~~~~l~~~~~~l~lgy~~V~nrsq~d~~ 233 (799)
+..-+- .=+++||.|-...--+..+++.. ..+.+.|+..-.+-++||.
T Consensus 335 f~~~~i-~~~I~TKlDET~s~G~~~s~~~e--~~~PV~YvT~GQ~VPeDI~ 382 (407)
T COG1419 335 FSLFPI-DGLIFTKLDETTSLGNLFSLMYE--TRLPVSYVTNGQRVPEDIV 382 (407)
T ss_pred hccCCc-ceeEEEcccccCchhHHHHHHHH--hCCCeEEEeCCCCCCchhh
Confidence 544333 23689999987653344444422 2344567666667777764
No 331
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=95.36 E-value=0.044 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
..+|+|+|..++|||+|.--+++-.|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f 28 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF 28 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc
Confidence 35899999999999999999888876
No 332
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.23 E-value=0.18 Score=57.10 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=45.8
Q ss_pred ccceEEEEecCC--ccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCC
Q 003736 135 DKQIRLKIFSPH--VLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 198 (799)
Q Consensus 135 ~~~i~l~i~~p~--~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~D 198 (799)
...+++.....+ ...|.||||||-.+-.- |++|.+.+..|.....-..++ .+--.|-|+||+|
T Consensus 61 aq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-~~LeIiPViNKID 139 (603)
T COG0481 61 AQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-NNLEIIPVLNKID 139 (603)
T ss_pred eeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-cCcEEEEeeeccc
Confidence 345566555443 34689999999765311 999999998877533333344 4667999999999
Q ss_pred CCCC
Q 003736 199 IMDR 202 (799)
Q Consensus 199 l~~~ 202 (799)
|-..
T Consensus 140 LP~A 143 (603)
T COG0481 140 LPAA 143 (603)
T ss_pred CCCC
Confidence 9643
No 333
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.19 E-value=0.062 Score=69.24 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=28.1
Q ss_pred CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 43 ~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
...+||=.+|||.++|||||+|+.- |.+| |-..
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~ 139 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAE 139 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCch
Confidence 3569999999999999999999996 8875 6654
No 334
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.19 E-value=0.2 Score=59.34 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=72.9
Q ss_pred CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHh
Q 003736 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (799)
Q Consensus 43 ~~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~ 122 (799)
..+.-|-++|+|.--+||+-||-.|-|..+---..|..|... |-.++....|+..
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqI---------------------gAt~fp~~ni~e~---- 525 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQI---------------------GATYFPAENIREK---- 525 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeec---------------------cccccchHHHHHH----
Confidence 467789999999999999999999998865222223222111 2222233333322
Q ss_pred hhhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHH--HHHHHHHcCCC
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANSD--ALQIAGIADPD 186 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~d--al~la~~~dp~ 186 (799)
|.......+. .-.+|.|.+|||||--+-.. |++-...+..|. .+.++|. .
T Consensus 526 tk~~~~~~K~-----------~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~---r 591 (1064)
T KOG1144|consen 526 TKELKKDAKK-----------RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRM---R 591 (1064)
T ss_pred HHHHHhhhhh-----------hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHh---c
Confidence 2211111110 11367899999999443211 777777777654 4555543 5
Q ss_pred CCcEEEEeecCCCC
Q 003736 187 GYRTIGIITKLDIM 200 (799)
Q Consensus 187 g~rtIgVlTK~Dl~ 200 (799)
..++|..+||+|.+
T Consensus 592 ktpFivALNKiDRL 605 (1064)
T KOG1144|consen 592 KTPFIVALNKIDRL 605 (1064)
T ss_pred CCCeEEeehhhhhh
Confidence 78899999999987
No 335
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=0.22 Score=50.96 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=65.2
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhh
Q 003736 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (799)
Q Consensus 44 ~i~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~ 123 (799)
.--+-.|++||+.++|||++|-.+..-.|- ++.....+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~------------------~~~~sTiG------------------------ 46 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFN------------------TSFISTIG------------------------ 46 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCc------------------CCccceEE------------------------
Confidence 345668999999999999999999877651 00001111
Q ss_pred hhhcCCCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChH---HHHHHHHHcCCC
Q 003736 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANS---DALQIAGIADPD 186 (799)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~---dal~la~~~dp~ 186 (799)
+.-..-++++.+ ....|-++||-|=.+--. |.+-.++..-. .+++..++..+.
T Consensus 47 ---------IDFk~kti~l~g-~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~ 116 (207)
T KOG0078|consen 47 ---------IDFKIKTIELDG-KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD 116 (207)
T ss_pred ---------EEEEEEEEEeCC-eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC
Confidence 011111222222 123578999999543211 44544444333 345666666678
Q ss_pred CCcEEEEeecCCCCCC
Q 003736 187 GYRTIGIITKLDIMDR 202 (799)
Q Consensus 187 g~rtIgVlTK~Dl~~~ 202 (799)
+...|.|-||+|+.++
T Consensus 117 ~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 117 DVVKILVGNKCDLEEK 132 (207)
T ss_pred CCcEEEeecccccccc
Confidence 8999999999999874
No 336
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.037 Score=60.53 Aligned_cols=52 Identities=27% Similarity=0.474 Sum_probs=39.4
Q ss_pred CEEEEeCCCCCCC------------Ce----EecCCCCCC--hHHHHHHHHHcCCCCCcEEEEeecCCCCCCc
Q 003736 149 DITLVDLPGITKV------------PV----VTPANSDLA--NSDALQIAGIADPDGYRTIGIITKLDIMDRG 203 (799)
Q Consensus 149 ~LtLVDlPGi~~~------------~~----V~~a~~dl~--~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g 203 (799)
-+|||||.|-.+- |+ |++|+..++ +.+-+.++..++ .+.+.++||+|+.++.
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~---iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALN---IPFFVLVTKMDLVDRQ 319 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhC---CCeEEEEEeeccccch
Confidence 4689999996642 22 889988775 555567776654 6799999999999874
No 337
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.14 Score=55.79 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=39.0
Q ss_pred CEEEEeCCCCCCC-------C-e------EecCCCCCChHHH--HHHHHHcCCCCCcEEEEeecCCCCCCchh
Q 003736 149 DITLVDLPGITKV-------P-V------VTPANSDLANSDA--LQIAGIADPDGYRTIGIITKLDIMDRGTD 205 (799)
Q Consensus 149 ~LtLVDlPGi~~~-------~-~------V~~a~~dl~~~da--l~la~~~dp~g~rtIgVlTK~Dl~~~g~~ 205 (799)
.++|||-||-.+. . . |+++.....+|.| +-+...+.+ ..+.|+||+|...++..
T Consensus 71 q~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~---klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 71 QFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCK---KLVVVINKIDVLPENQR 140 (522)
T ss_pred eeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhcc---ceEEEEeccccccchhh
Confidence 6799999995432 1 1 8888888887765 445555544 57999999999977543
No 338
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.06 E-value=0.12 Score=65.17 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=36.7
Q ss_pred ccCEEEEeCCCCCCC----------Ce----EecCCCCCChHH--HHHHHHHcCCCCCcEEEEeecCCCCC
Q 003736 147 VLDITLVDLPGITKV----------PV----VTPANSDLANSD--ALQIAGIADPDGYRTIGIITKLDIMD 201 (799)
Q Consensus 147 ~~~LtLVDlPGi~~~----------~~----V~~a~~dl~~~d--al~la~~~dp~g~rtIgVlTK~Dl~~ 201 (799)
.|.++|+||||...- .. |++++..+..+. ++.+++. .+.++|.|+||+|+..
T Consensus 525 ~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 525 IPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred cCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH---cCCCEEEEEECCCCcc
Confidence 568999999994421 00 788887666553 3444444 4678999999999974
No 339
>PRK01889 GTPase RsgA; Reviewed
Probab=94.77 E-value=0.03 Score=62.77 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..++|||||+|+|+|..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 79999999999999999999985
No 340
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.50 E-value=0.1 Score=60.46 Aligned_cols=25 Identities=24% Similarity=0.644 Sum_probs=23.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-+|||||+.++|||||+=+|++..|
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef 34 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEF 34 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhc
Confidence 4899999999999999999999986
No 341
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=94.46 E-value=0.058 Score=62.41 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCccccceEEEEecCCccCEEEEeCCCCCC-CCe-------------EecCCCCCC---------hHHHHHHHHHcCCCC
Q 003736 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITK-VPV-------------VTPANSDLA---------NSDALQIAGIADPDG 187 (799)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~-~~~-------------V~~a~~dl~---------~~dal~la~~~dp~g 187 (799)
.||+-++-+..+. ++--.+||+|.||... +|. |++|+++.- +-+-..+++.+. -
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i 315 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--I 315 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--c
Confidence 4555555555555 4456899999999322 111 888886542 223345566554 4
Q ss_pred CcEEEEeecCCCCCCchh
Q 003736 188 YRTIGIITKLDIMDRGTD 205 (799)
Q Consensus 188 ~rtIgVlTK~Dl~~~g~~ 205 (799)
...|+++||+|+++=..+
T Consensus 316 ~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQD 333 (603)
T ss_pred ceEEEEeecccccCccHH
Confidence 678999999999964333
No 342
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=94.30 E-value=0.094 Score=61.26 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=69.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhc
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~ 127 (799)
-.++|+|.-.+||++|+..|++... |... .+.+..|+.+.. +..+ .+|
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~--------------------l~~E----~eR-- 176 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDT--------------------LFYE----QER-- 176 (971)
T ss_pred EEEEEeeccccChhHHHHhhceecc-cccc-----cccccccccccc--------------------chhh----Hhc--
Confidence 3688999999999999999998864 4443 222222222211 0000 011
Q ss_pred CCCCCccccceEEEEecCCc--cCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEE
Q 003736 128 GGNKGVSDKQIRLKIFSPHV--LDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTI 191 (799)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~--~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtI 191 (799)
+-.+-..+.+|-+..-.. --++++||||-..-.. |+++..++.-.. -++++..-.+..+..
T Consensus 177 --g~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~~~~i~ 253 (971)
T KOG0468|consen 177 --GCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQNRLPIV 253 (971)
T ss_pred --CceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhccCcEE
Confidence 111222333443333222 1478999999765311 677777766333 245666666788999
Q ss_pred EEeecCCCC
Q 003736 192 GIITKLDIM 200 (799)
Q Consensus 192 gVlTK~Dl~ 200 (799)
+||||+|++
T Consensus 254 vviNKiDRL 262 (971)
T KOG0468|consen 254 VVINKVDRL 262 (971)
T ss_pred EEEehhHHH
Confidence 999999976
No 343
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.30 E-value=0.037 Score=57.76 Aligned_cols=25 Identities=52% Similarity=0.702 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP 74 (799)
-++|+|..+||||||||.|.|.+- |
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~-p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK-P 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC-C
Confidence 599999999999999999999984 6
No 344
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.19 E-value=0.064 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~ 70 (799)
..|+|+|.-|||||+|+|.|..+
T Consensus 9 K~VailG~ESsGKStLv~kLA~~ 31 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANI 31 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHH
Confidence 36899999999999999999876
No 345
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.17 E-value=0.064 Score=59.20 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|.+||.+|+||||++|+|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 456799999999999999977764
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.10 E-value=0.041 Score=56.56 Aligned_cols=27 Identities=41% Similarity=0.721 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~ 76 (799)
-|.|+|+.+||||||+|+|.|. ..|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~-l~~t~ 60 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGD-LKPTS 60 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCc-cccCC
Confidence 4889999999999999999998 33443
No 347
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=93.68 E-value=0.18 Score=57.07 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=40.3
Q ss_pred CEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchh
Q 003736 149 DITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD 205 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~ 205 (799)
.+.+|||||-..-.- +++|...-..|.-+- .+..-..|-+-|.|+||+|.-+..-+
T Consensus 69 ~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFV-lkKAl~~gL~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 69 RINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFV-LKKALALGLKPIVVINKIDRPDARPD 138 (603)
T ss_pred EEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhh-HHHHHHcCCCcEEEEeCCCCCCCCHH
Confidence 678999999765321 789988887777543 33333468889999999999865443
No 348
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.62 E-value=0.11 Score=56.38 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+++|..++||||++..|.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999875
No 349
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.41 E-value=0.077 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003736 49 QVAVVGSQSSGKSSVLEALVG 69 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G 69 (799)
..+++|+.+|||||||.||.=
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999853
No 350
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.38 E-value=0.17 Score=57.93 Aligned_cols=28 Identities=36% Similarity=0.649 Sum_probs=23.5
Q ss_pred CCCCCCEEE-EEccCCCCHHHHHHHHhCC
Q 003736 43 STIELPQVA-VVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 43 ~~i~lPqIv-VvG~qSsGKSSllnaL~G~ 70 (799)
.+...|-|| |||.++.|||||+.+|+.+
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr 92 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR 92 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHH
Confidence 345667666 9999999999999999876
No 351
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.34 E-value=0.07 Score=53.56 Aligned_cols=28 Identities=32% Similarity=0.620 Sum_probs=24.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
+++|+|..+||||||||-|.|.. .|.+-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~-~P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE-TPASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc-CCCCc
Confidence 68999999999999999999996 47654
No 352
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.28 E-value=0.067 Score=50.72 Aligned_cols=23 Identities=52% Similarity=0.697 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+|||||||++|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999999994
No 353
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=93.14 E-value=0.13 Score=54.12 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
++-+||=+|.||||++.-|+|.. -|+.++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vasy 89 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAAY 89 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCC-Cccccc
Confidence 56779999999999999999994 466554
No 354
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=0.69 Score=44.68 Aligned_cols=105 Identities=15% Similarity=0.263 Sum_probs=65.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhh
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~ 126 (799)
|..||+||.-++||+-|+..++.- ++|-|.|.+--.-..+
T Consensus 7 lfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmi--------------------------------------- 46 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMI--------------------------------------- 46 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEE---------------------------------------
Confidence 568999999999999999999866 4588776432221111
Q ss_pred cCCCCCccccceEEEEecCCccCEEEEeCCCCCCC----------Ce----E--ecCCCCCC-hHHHHHHHHHcCCCCCc
Q 003736 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV----------PV----V--TPANSDLA-NSDALQIAGIADPDGYR 189 (799)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~----------~~----V--~~a~~dl~-~~dal~la~~~dp~g~r 189 (799)
..++|.+. ...|.+.||.|--+- .+ | +.+...+. -.++++-+.++.....-
T Consensus 47 -----------ktvev~ge-kiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvl 114 (213)
T KOG0095|consen 47 -----------KTVEVNGE-KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVL 114 (213)
T ss_pred -----------EEEEECCe-EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceE
Confidence 12222222 225677888874321 11 1 22222222 34566666777766777
Q ss_pred EEEEeecCCCCCCc
Q 003736 190 TIGIITKLDIMDRG 203 (799)
Q Consensus 190 tIgVlTK~Dl~~~g 203 (799)
.|.|-||+|+.++.
T Consensus 115 kilvgnk~d~~drr 128 (213)
T KOG0095|consen 115 KILVGNKIDLADRR 128 (213)
T ss_pred EEeeccccchhhhh
Confidence 88999999998753
No 355
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.00 E-value=0.085 Score=52.45 Aligned_cols=31 Identities=32% Similarity=0.595 Sum_probs=25.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~T 81 (799)
.+.+||..+|||||||++|.|+ |+.+.|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 6899999999999999999999 355555544
No 356
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.88 E-value=0.06 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=17.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
+|||+|..|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999855
No 357
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.87 E-value=0.14 Score=54.10 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=22.8
Q ss_pred EEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCC
Q 003736 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK 93 (799)
Q Consensus 52 VvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~ 93 (799)
|+|..+|||||+..++... ++.. -|.+..+.|-...
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~----~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESN----GRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-----S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhc----cCCceEEEcchHh
Confidence 7999999999999999764 2221 2567777775543
No 358
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.84 E-value=0.095 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003736 50 VAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 50 IvVvG~qSsGKSSllnaL~G~ 70 (799)
|+++|..+||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999976
No 359
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.69 E-value=0.093 Score=50.82 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~ 70 (799)
|.|+|||..+||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999765
No 360
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=92.60 E-value=0.065 Score=65.58 Aligned_cols=24 Identities=50% Similarity=0.692 Sum_probs=21.0
Q ss_pred EccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 53 VGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 53 vG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
+|.||||||||||.|.|-.| ++-+
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 59999999999999999986 6644
No 361
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.58 E-value=0.098 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+|+|..+|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999997
No 362
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=92.54 E-value=0.56 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.708 Sum_probs=22.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-+|.++|--||||+|+++.|.|.+
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~ 40 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGED 40 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCC
Confidence 489999999999999999999996
No 363
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.29 E-value=0.35 Score=48.10 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVG 69 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G 69 (799)
-.++|||.-++||||+|...+.
T Consensus 21 iK~vivGng~VGKssmiqryCk 42 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCK 42 (246)
T ss_pred EEEEEECCCccchHHHHHHHhc
Confidence 3789999999999999999873
No 364
>PRK13695 putative NTPase; Provisional
Probab=92.25 E-value=0.64 Score=46.31 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+++|..++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 365
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.24 E-value=0.13 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
-|+|+|..+||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999986
No 366
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.20 E-value=2.3 Score=48.26 Aligned_cols=56 Identities=32% Similarity=0.272 Sum_probs=44.9
Q ss_pred CEEEEeCCCCCCCCe--------------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEeecCCCCCCchhHH
Q 003736 149 DITLVDLPGITKVPV--------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR 207 (799)
Q Consensus 149 ~LtLVDlPGi~~~~~--------------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVlTK~Dl~~~g~~~~ 207 (799)
++++|||.|-..... |++| ..-|+|...|+.++..-.=|=.|+||.|---+|--+.
T Consensus 184 DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa---m~GQdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaAL 259 (451)
T COG0541 184 DVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA---MIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAAL 259 (451)
T ss_pred CEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec---ccchHHHHHHHHHhhhcCCceEEEEcccCCCcchHHH
Confidence 899999999776532 6665 4579999999999987777788999999988776554
No 367
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.18 E-value=0.11 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-|++||..++||||||+.|.|..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999996
No 368
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.10 E-value=0.12 Score=54.03 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999983
No 369
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.06 E-value=0.13 Score=53.20 Aligned_cols=23 Identities=52% Similarity=0.706 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||+++|.|.-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999983
No 370
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.97 E-value=0.14 Score=52.74 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.++++|..+||||||++.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999997
No 371
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.89 E-value=0.14 Score=49.57 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++|+|..++|||||+++|.|.. |...|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G~ 56 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL--EPDEGI 56 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCceE
Confidence 46799999999999999999984 444443
No 372
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.44 Score=53.68 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhcC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g 128 (799)
..|+|-.+-|||+||-|.|+=..---+..|.+..+-. +......|- +-+.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~-----~~~a~SDWM--------------------~iEk----- 63 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKS-----GKHAKSDWM--------------------EIEK----- 63 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccC-----CcccccHHH--------------------HHHH-----
Confidence 5899999999999999998622100111121111100 000011222 1111
Q ss_pred CCCCccccceEEEEecCCccCEEEEeCCCCCCCCe--------------EecCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 003736 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------------VTPANSDLANSDALQIAGIADPDGYRTIGII 194 (799)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~~~~--------------V~~a~~dl~~~dal~la~~~dp~g~rtIgVl 194 (799)
..|||-..-.+.....++ -+.|+||||--+-.. |++|...+..+. ++|.+-+.-.|.++|-.+
T Consensus 64 -qRGISVtsSVMqF~Y~~~-~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrlR~iPI~TFi 140 (528)
T COG4108 64 -QRGISVTSSVMQFDYADC-LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRLRDIPIFTFI 140 (528)
T ss_pred -hcCceEEeeEEEeccCCe-EEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhhcCCceEEEe
Confidence 234443333333333321 578999999654321 889999998887 677777777899999999
Q ss_pred ecCCCCCC
Q 003736 195 TKLDIMDR 202 (799)
Q Consensus 195 TK~Dl~~~ 202 (799)
||+|.-.+
T Consensus 141 NKlDR~~r 148 (528)
T COG4108 141 NKLDREGR 148 (528)
T ss_pred eccccccC
Confidence 99998744
No 373
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.88 E-value=0.14 Score=52.48 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999983
No 374
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=0.8 Score=46.13 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=27.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
-+-.++++|+.++|||.||-..+...|.|+-.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd 36 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD 36 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc
Confidence 34578999999999999999999999866544
No 375
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.72 E-value=0.14 Score=52.20 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=26.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC-CCCCCCCccccce
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRP 84 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~-~lP~~~~~~Tr~p 84 (799)
-|+|+|..+||||||++.|.+.- -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 58999999999999999999872 1222333456665
No 376
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=0.32 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
|..|+|+|+.++|||=|+-.+.+-.|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f 34 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTF 34 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCc
Confidence 46899999999999999999988865
No 377
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.69 E-value=0.15 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 378
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.66 E-value=0.15 Score=52.82 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999983
No 379
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.57 E-value=0.15 Score=53.36 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|.-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999983
No 380
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.53 E-value=0.17 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999984
No 381
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.51 E-value=0.7 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-|-+||.---|||||..||+|.-
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvw 34 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVW 34 (415)
T ss_pred Eeeeeeecccchhhheehhhcee
Confidence 58899999999999999999994
No 382
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.46 E-value=0.17 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 383
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.17 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 384
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.40 E-value=0.17 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 385
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.37 E-value=0.19 Score=50.50 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=24.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++++|..+||||||++.|.|.. |...|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 56 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR--PPASGE 56 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 68999999999999999999984 434443
No 386
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=91.34 E-value=0.29 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-++++||=|+|||||++|.+..-+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~ 44 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQ 44 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeecc
Confidence 378999999999999999876433
No 387
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.28 E-value=0.18 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.26 E-value=0.2 Score=48.95 Aligned_cols=31 Identities=35% Similarity=0.411 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~T 81 (799)
.++++|..++|||||+++|.|.- |...|.+|
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 78899999999999999999983 44555443
No 389
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.26 E-value=0.19 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+|||||||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 390
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.24 E-value=0.18 Score=51.71 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++|+|..++|||||+++|.|.. |..+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 64 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGK 64 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCe
Confidence 68999999999999999999984 444553
No 391
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=91.24 E-value=0.42 Score=51.25 Aligned_cols=114 Identities=17% Similarity=0.283 Sum_probs=69.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhhhcC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~~~g 128 (799)
.|..||...-||+||--||++. +.-.+ +-...++++|..+-+.
T Consensus 14 NigtiGHvdHGKTTLtaAit~~-la~~~-----------------------------~~~~~~y~~id~aPeE------- 56 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTV-LAKKG-----------------------------GAEAKAYDQIDNAPEE------- 56 (394)
T ss_pred EEEEeccccCchhhHHHHHHHH-HHhhc-----------------------------cccccchhhhccCchH-------
Confidence 6899999999999999999876 21111 1112233333221111
Q ss_pred CCCCccccceEEEEecCCccCEEEEeCCCCCC---C-----C-e-----EecCCCCCChHH--HHHHHHHcCCCCCcEEE
Q 003736 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITK---V-----P-V-----VTPANSDLANSD--ALQIAGIADPDGYRTIG 192 (799)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi~~---~-----~-~-----V~~a~~dl~~~d--al~la~~~dp~g~rtIg 192 (799)
...|++=++-+++....+ .+...||-||-.+ + . . |++|...-..|. =+-+++++. -.+.+.
T Consensus 57 k~rGITIntahveyet~~-rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvG--vp~ivv 133 (394)
T COG0050 57 KARGITINTAHVEYETAN-RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG--VPYIVV 133 (394)
T ss_pred hhcCceeccceeEEecCC-ceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcC--CcEEEE
Confidence 123444445555555543 3789999999542 1 0 0 777776665443 345677764 247788
Q ss_pred EeecCCCCCC
Q 003736 193 IITKLDIMDR 202 (799)
Q Consensus 193 VlTK~Dl~~~ 202 (799)
++||+|+++.
T Consensus 134 flnK~Dmvdd 143 (394)
T COG0050 134 FLNKVDMVDD 143 (394)
T ss_pred EEecccccCc
Confidence 8899999974
No 392
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.22 E-value=0.19 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999983
No 393
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.21 E-value=0.17 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999983
No 394
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.20 E-value=0.18 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999984
No 395
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.19 E-value=0.22 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
.|..||..+-|||||++.|....|
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f 67 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKF 67 (406)
T ss_pred EEEEeccCCccHHHHHHHHhcccc
Confidence 588999999999999999998865
No 396
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.15 E-value=0.19 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.++|+|..+||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999998
No 397
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.14 E-value=0.18 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+|||||||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999984
No 398
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.14 E-value=0.17 Score=56.38 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.|+|+|.++|||||++++|++. +|.+..+
T Consensus 164 nilI~G~tGSGKTTll~aLl~~--i~~~~ri 192 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISA--IPPQERL 192 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcc--cCCCCCE
Confidence 5999999999999999999987 3655443
No 399
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.10 E-value=0.19 Score=51.64 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999983
No 400
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.10 E-value=0.19 Score=52.74 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999983
No 401
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.08 E-value=0.18 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999999984
No 402
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.05 E-value=0.19 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999983
No 403
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=91.01 E-value=0.32 Score=53.40 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=40.7
Q ss_pred EEEEecCCccCEEEEeCCCCCCC------------Ce----EecCCCCCC--hHHHHHHHHHcCCCCCcEEEEeecCCCC
Q 003736 139 RLKIFSPHVLDITLVDLPGITKV------------PV----VTPANSDLA--NSDALQIAGIADPDGYRTIGIITKLDIM 200 (799)
Q Consensus 139 ~l~i~~p~~~~LtLVDlPGi~~~------------~~----V~~a~~dl~--~~dal~la~~~dp~g~rtIgVlTK~Dl~ 200 (799)
.++|.....--+|||||.|--+- |. ++-||..+. +.+-+.+|-.+ ..+++.|+||+|..
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL---~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL---HVPVFVVVTKIDMC 286 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh---cCcEEEEEEeeccC
Confidence 35555554556899999995431 11 677777764 44445555443 46799999999998
Q ss_pred CC
Q 003736 201 DR 202 (799)
Q Consensus 201 ~~ 202 (799)
..
T Consensus 287 PA 288 (641)
T KOG0463|consen 287 PA 288 (641)
T ss_pred cH
Confidence 64
No 404
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.97 E-value=0.21 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999983
No 405
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.97 E-value=0.19 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999983
No 406
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.95 E-value=0.21 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||+..|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999983
No 407
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=90.95 E-value=0.19 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999983
No 408
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.94 E-value=0.19 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||+++|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999983
No 409
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.90 E-value=0.21 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 410
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.90 E-value=0.2 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 411
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=90.88 E-value=0.31 Score=54.56 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
..++|+|||...||||||..-|+..
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5579999999999999998776654
No 412
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.85 E-value=0.22 Score=50.61 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=24.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++++|..+|||||||..|.|....|...|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~ 65 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGE 65 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Confidence 6889999999999999999997433334453
No 413
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.85 E-value=0.18 Score=50.48 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHh---CCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALV---GRD 71 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~---G~~ 71 (799)
+.|.|+|+|.++|||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 46889999999999999999998 654
No 414
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=90.84 E-value=0.67 Score=50.99 Aligned_cols=136 Identities=19% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCCCCCCccccceEEEEeccCCCcccccccccCCCCcccChhHHHHHHHHhhhh
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~ei~~~i~~~~~~ 125 (799)
.+-+++-||+---|||||+-.|+=-. ....+=+|..-.+... .+-.+-...||+-+-+-++++-+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dt----------k~i~eDQla~l~~dS~----~~~t~g~~~D~ALLvDGL~AERE- 69 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDT----------KAIYEDQLASLERDSK----RKGTQGEKIDLALLVDGLEAERE- 69 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcc----------hhhhHHHHHHHhcccc----cccCCCCccchhhhhhhhHHHHh-
Confidence 56689999999999999988776332 1111101100000000 00001134577777777766553
Q ss_pred hcCCCCCccccceEEEEecCCccCEEEEeCCCC---CCCCe-----------EecCCCCCChHHHH--HHHHHcCCCC-C
Q 003736 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGI---TKVPV-----------VTPANSDLANSDAL--QIAGIADPDG-Y 188 (799)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDlPGi---~~~~~-----------V~~a~~dl~~~dal--~la~~~dp~g-~ 188 (799)
.||+=|+-... ++...-.+.+.||||- +++-. +++|...+..|.-. -++.. .| +
T Consensus 70 -----QGITIDVAYRy-FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sL---LGIr 140 (431)
T COG2895 70 -----QGITIDVAYRY-FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASL---LGIR 140 (431)
T ss_pred -----cCceEEEEeee-cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHH---hCCc
Confidence 34444443333 3334568999999993 33211 67887777766531 12222 24 4
Q ss_pred cEEEEeecCCCCCCchh
Q 003736 189 RTIGIITKLDIMDRGTD 205 (799)
Q Consensus 189 rtIgVlTK~Dl~~~g~~ 205 (799)
..+..+||+||++-..+
T Consensus 141 hvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 141 HVVVAVNKMDLVDYSEE 157 (431)
T ss_pred EEEEEEeeecccccCHH
Confidence 46677899999986554
No 415
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.84 E-value=0.22 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 416
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.82 E-value=0.2 Score=51.81 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 417
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.80 E-value=0.2 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 418
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.79 E-value=0.22 Score=54.69 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
-|+|.|..||||+||||+|++.
T Consensus 175 NILisGGTGSGKTTlLNal~~~ 196 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGF 196 (355)
T ss_pred eEEEeCCCCCCHHHHHHHHHhc
Confidence 6999999999999999999998
No 419
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.78 E-value=0.22 Score=51.42 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+||||||++.|.|.. |...|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 66 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESG 66 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCe
Confidence 68899999999999999999983 44444
No 420
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=90.77 E-value=0.22 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.++|+|..+||||||++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6889999999999999999997
No 421
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.74 E-value=0.23 Score=51.64 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+|||||||++|.|.- |-..|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKG 58 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 58899999999999999999984 44444
No 422
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.70 E-value=0.21 Score=52.30 Aligned_cols=29 Identities=34% Similarity=0.334 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++|+|..+||||||+++|.|.. |...|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 59 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSGE 59 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCCE
Confidence 68999999999999999999983 444443
No 423
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.69 E-value=0.22 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 424
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=90.69 E-value=0.23 Score=53.24 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+|||||||+.|.|.- |..+|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G 68 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI--EPTSG 68 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCC
Confidence 58899999999999999999983 43444
No 425
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=90.68 E-value=0.19 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999999983
No 426
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.68 E-value=0.23 Score=51.40 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCccc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~T 81 (799)
.++++|..+||||||++.|+|.. |-.+|.++
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i~ 45 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDFI 45 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCEE
Confidence 57899999999999999999984 44555443
No 427
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.66 E-value=0.22 Score=51.41 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+||||||++.|.|.. |...|
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 59 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY--KPTSG 59 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 58899999999999999999984 43444
No 428
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.66 E-value=0.23 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999983
No 429
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.62 E-value=0.23 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999984
No 430
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.55 E-value=0.22 Score=52.02 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+||||||++.|.|.. |...|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 56 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY--DVSSG 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 58999999999999999999984 44444
No 431
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.55 E-value=0.25 Score=49.48 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||+++|.|.. |...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE--EPDSG 55 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58899999999999999999983 54444
No 432
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=0.53 Score=48.22 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (799)
Q Consensus 46 ~lPqIvVvG~qSsGKSSllnaL~G~~~ 72 (799)
-|..||++|+.++|||=||..++.-.|
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF 39 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEF 39 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccccc
Confidence 356899999999999999999987776
No 433
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.52 E-value=0.24 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999983
No 434
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.50 E-value=0.25 Score=52.77 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=24.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCcc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~ 80 (799)
.++|+|..+|||||||+.|.|.. +-..|.+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL--KPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCceE
Confidence 69999999999999999999994 4444533
No 435
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.48 E-value=0.26 Score=50.39 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||++.|.|.- |...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999983 44444
No 436
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.43 E-value=0.23 Score=53.93 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||++.|.|.- |..+|
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G 62 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL--KPSSG 62 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 58899999999999999999983 44444
No 437
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=90.43 E-value=0.24 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-++|+|..++||||+|++|+|.-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999984
No 438
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.39 E-value=0.26 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 439
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=90.38 E-value=0.23 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999984
No 440
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.33 E-value=0.25 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-.++|+|..+||||||++.|.|.-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999983
No 441
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=90.32 E-value=2.1 Score=41.75 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
+++|||.-|.||+++||-|+=..
T Consensus 11 kVvVcG~k~VGKTaileQl~yg~ 33 (198)
T KOG3883|consen 11 KVVVCGMKSVGKTAILEQLLYGN 33 (198)
T ss_pred EEEEECCccccHHHHHHHHHhcc
Confidence 79999999999999999986443
No 442
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.32 E-value=0.24 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999983
No 443
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=90.28 E-value=0.24 Score=51.38 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||++.|.|.- |-..|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL--RPTSG 55 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 68899999999999999999983 44444
No 444
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=90.27 E-value=0.25 Score=50.83 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999983
No 445
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.26 E-value=0.25 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 446
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=90.24 E-value=0.25 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+|||||||+.|.|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999983
No 447
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=90.22 E-value=0.26 Score=50.99 Aligned_cols=23 Identities=57% Similarity=0.729 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 448
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.20 E-value=0.26 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999984
No 449
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.20 E-value=0.25 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 450
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.18 E-value=0.25 Score=51.38 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999983
No 451
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.18 E-value=0.24 Score=53.46 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..++|||||++.|.|.- |-..|
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~--~p~~G 62 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLL--LPEAG 62 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCc
Confidence 58999999999999999999993 33444
No 452
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.17 E-value=0.28 Score=48.89 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++++|..+||||||++.|.|.. |...|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G~ 58 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL--RPTSGR 58 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc--CCCCCe
Confidence 68999999999999999999984 444443
No 453
>PRK10908 cell division protein FtsE; Provisional
Probab=90.17 E-value=0.25 Score=51.23 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||++.|.|.. |..+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE--RPSAG 57 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58899999999999999999984 44444
No 454
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.15 E-value=0.26 Score=53.55 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+||||||++.|.|.- +..+|
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~--~p~~G 61 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL--QPTEG 61 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCC--CCCCc
Confidence 69999999999999999999984 44444
No 455
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.14 E-value=0.28 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||+..|.|..
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 456
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.12 E-value=0.26 Score=52.21 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 457
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.10 E-value=0.28 Score=53.25 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=24.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCcc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~~ 80 (799)
.++|+|..+||||||++.|.|.- |...|.+
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~--~p~~G~I 94 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGEL--EPSEGKI 94 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 58899999999999999999983 5555544
No 458
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.04 E-value=0.3 Score=48.96 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||++.|.|.. |...|
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~--~~~~G 54 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL--KPSSG 54 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68899999999999999999984 44445
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=90.00 E-value=0.28 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
-++++|..+|||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999999997
No 460
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.00 E-value=0.27 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|+|.-
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999983
No 461
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.00 E-value=0.27 Score=50.60 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~ 76 (799)
..+|+|..+|||||||.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 6899999999999999999999 44544
No 462
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=89.98 E-value=0.17 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003736 48 PQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 48 PqIvVvG~qSsGKSSllnaL~G~ 70 (799)
..++|+|..+||||||+++|.|.
T Consensus 23 g~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999876
No 463
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.94 E-value=0.26 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999999983
No 464
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=89.93 E-value=0.27 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCc
Confidence 68999999999999999999983
No 465
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.93 E-value=0.28 Score=50.11 Aligned_cols=29 Identities=45% Similarity=0.543 Sum_probs=24.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++|+|..+||||||++.|.|.. |..+|.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~ 61 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL--EKLSGS 61 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--CCCCCe
Confidence 68889999999999999999984 445553
No 466
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=89.93 E-value=0.32 Score=48.26 Aligned_cols=28 Identities=36% Similarity=0.620 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+||||||++.|.|.. |...|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 56 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW--PWGSG 56 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 68999999999999999999983 44444
No 467
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.92 E-value=0.29 Score=48.96 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+||||||++.|.|.. |-.+|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G 57 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL--KPQQG 57 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC--CCCCC
Confidence 58899999999999999999984 44444
No 468
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.83 E-value=0.27 Score=53.06 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..+||||||++.|.|.- +...|
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G 59 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGIL--KPTSG 59 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 57899999999999999999983 43444
No 469
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.81 E-value=0.31 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 470
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.81 E-value=0.28 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999994
No 471
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=89.81 E-value=0.3 Score=51.34 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=24.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++++|..+||||||++.|+|.- |...|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 56 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLE--QPDSGR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 68899999999999999999983 444553
No 472
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.79 E-value=0.29 Score=51.52 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||++.|.|.. |...|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 56 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI--EPTSG 56 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 58899999999999999999983 44444
No 473
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.78 E-value=0.27 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~ 70 (799)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999765
No 474
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.78 E-value=0.29 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999973
No 475
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=89.71 E-value=0.3 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999984
No 476
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.71 E-value=0.31 Score=48.43 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=24.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++|+|..+||||||++.|.|.. |...|.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~--~~~~G~ 58 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY--DPTSGE 58 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCE
Confidence 68999999999999999999984 444453
No 477
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.69 E-value=0.25 Score=50.64 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 68899999999999999999984
No 478
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.68 E-value=0.31 Score=49.93 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 479
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.66 E-value=0.3 Score=51.03 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++|+|..++|||||++.|.|.. |...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~--~~~~G 55 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFE--TPTSG 55 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 68899999999999999999994 33444
No 480
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=89.64 E-value=0.7 Score=49.52 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003736 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 47 lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
+--|+|+|.+-+|||.|+|.|+|.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEEEeecCCccchHHHHHHHhcc
Confidence 336889999999999999999985
No 481
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.64 E-value=0.3 Score=52.40 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCCc
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~~ 79 (799)
.++|+|..+||||||+..|+|.- |...|.
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~--~p~~G~ 80 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSL--SPTVGK 80 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCceE
Confidence 58999999999999999999983 444553
No 482
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=89.63 E-value=0.29 Score=52.89 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||+++|.|.- |...|
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 65 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALL--IPSEG 65 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58899999999999999999984 44444
No 483
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.62 E-value=0.36 Score=47.81 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003736 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 28 ~i~kL~d~~~~~g~~~~i~lPqIvVvG~qSsGKSSllnaL~G~ 70 (799)
.+++|.+.+. ....-+-+-|+|+|..++|||+|++++...
T Consensus 8 e~~~l~~~l~---~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 8 EIERLRDLLD---AAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHTTG---GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4555665543 123344578999999999999999998765
No 484
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.60 E-value=0.28 Score=53.90 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.|+|+|.++||||||+++|+|. +|...+
T Consensus 146 ~ili~G~tGsGKTTll~al~~~--~~~~~~ 173 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDE--IPKDER 173 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHcc--CCcccc
Confidence 7999999999999999999987 365544
No 485
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.56 E-value=0.34 Score=50.06 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.+++||+.+|||||||.+|-|..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58899999999999999999987
No 486
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=89.48 E-value=0.31 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 487
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=89.42 E-value=0.32 Score=51.99 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~~ 78 (799)
.++++|..+||||||++.|.|.. |...|
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 62 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLM--TPAHG 62 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCc
Confidence 69999999999999999999983 44444
No 488
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=89.40 E-value=0.33 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||+++|.|..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68899999999999999999983
No 489
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=89.40 E-value=0.31 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999983
No 490
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.39 E-value=0.32 Score=51.05 Aligned_cols=23 Identities=17% Similarity=0.638 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+|||||||+.|.|.-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999983
No 491
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.39 E-value=0.32 Score=50.27 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999999984
No 492
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=89.38 E-value=0.32 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999984
No 493
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.37 E-value=0.31 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|..
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999984
No 494
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.35 E-value=0.27 Score=54.65 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCCCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~~lP~~~ 77 (799)
-|+|+|.++|||||+++||++. +|.+.
T Consensus 162 nili~G~tgSGKTTll~aL~~~--ip~~~ 188 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALRE--IPAIE 188 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhh--CCCCC
Confidence 5999999999999999999875 36543
No 495
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=89.32 E-value=0.33 Score=40.87 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003736 50 VAVVGSQSSGKSSVLEALVGR 70 (799)
Q Consensus 50 IvVvG~qSsGKSSllnaL~G~ 70 (799)
|+++|..+|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999866
No 496
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.31 E-value=0.29 Score=49.47 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-|+++|..+||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999998874
No 497
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=89.30 E-value=0.33 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
-+|++|+.+|||||+|+.|.|..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999996
No 498
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.29 E-value=0.32 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++++|..+||||||++.|.|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 499
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=89.29 E-value=0.31 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003736 49 QVAVVGSQSSGKSSVLEALVGRD 71 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G~~ 71 (799)
.++|+|..+||||||++.|+|.-
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 500
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.27 E-value=0.3 Score=49.23 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003736 49 QVAVVGSQSSGKSSVLEALVG 69 (799)
Q Consensus 49 qIvVvG~qSsGKSSllnaL~G 69 (799)
.++|+|..+|||||||++|.+
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999863
Done!