Query 003736
Match_columns 799
No_of_seqs 290 out of 2311
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 18:29:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003736.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1783-1787//hhsearch_pdb/003736hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 1.0 1 1 955.4 49.5 685 11-717 15-770 (772)
2 3szr_A Interferon-induced GTP- 1.0 1 1 764.5 48.3 554 19-713 18-607 (608)
3 3t34_A Dynamin-related protein 1.0 1 1 373.7 25.2 291 22-312 1-328 (360)
4 2x2e_A Dynamin-1; nitration, h 1.0 1 1 358.4 28.8 309 21-331 5-344 (353)
5 3ljb_A Interferon-induced GTP- 1.0 1 1 332.1 20.9 264 311-688 3-271 (271)
6 1jwy_B Dynamin A GTPase domain 1.0 1 1 291.0 24.7 281 23-304 1-315 (315)
7 2aka_B Dynamin-1; fusion prote 1.0 1 1 267.7 26.1 271 22-294 1-299 (299)
8 2j69_A Bacterial dynamin-like 1.0 1 1 153.3 20.4 172 24-203 50-246 (695)
9 2qpt_A EH domain-containing pr 1.0 1 1 97.7 11.2 141 46-202 64-233 (550)
10 4dcu_A GTP-binding protein ENG 1.0 1 1 86.4 14.3 104 44-202 20-146 (456)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=1.00 E-value=1 Score=955.38 Aligned_cols=685 Identities=39% Similarity=0.617 Sum_probs=573.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 56688876888555699999999999970999999998799993699988899989839998877798545510799823
Q 003736 11 AAQSQPSAVPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLL 90 (799)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~l~d~~~~~g~~~~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~~Tr~P~~i~l~ 90 (799)
+|.+.++.-.-++++|+++|+|+|.++.+|.+..+++|+|+|||.||+|||||+|+|+|.+|||+|.++|||||+++++.
T Consensus 15 ~~~~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~ 94 (772)
T 3zvr_A 15 VPRGSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLV 94 (772)
T ss_dssp ----------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 98652112202799999999999999864865557788799989999868999999968876676776555564588751
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCE-------
Q ss_conf 6788533110103799732482689999998542202899875546258998249855789995899988891-------
Q 003736 91 QTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV------- 163 (799)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~~------- 163 (799)
+.+ .+|++|.+..++.++++++++.+|..++++..|.+++|+.++|.++|++|++++++||||||+.+.++
T Consensus 95 ~~~--~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di 172 (772)
T 3zvr_A 95 NST--TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 172 (772)
T ss_dssp ECS--SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH
T ss_pred CCC--CCHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHH
T ss_conf 477--520110125884027889999999998755327787634553378871488775699989896667778884789
Q ss_pred ---------------------EECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf ---------------------76089877808999999870989992899941688888721288744066434442067
Q 003736 164 ---------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYV 222 (799)
Q Consensus 164 ---------------------V~~a~~d~~~s~al~la~~~dp~g~RtigViTK~Dl~d~gtd~~~iL~g~~~~L~lG~~ 222 (799)
|++|+.++..++.+.+++.+++.+.++|+|+||+|+++++....+++.++.+++++||+
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 252 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999835893899997688772155899999998760898799996910277510369999977544312577
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98708735543131099999999962068994123445789138999999999998983164728999999999999988
Q 003736 223 GVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHA 302 (799)
Q Consensus 223 ~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~ 302 (799)
.|++.|+.+......+.+++..|.+||..+|+|..+.+++|+..|.+.|.+.|..||++.||.++.+|+.++..++.+++
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele 332 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVD 332 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 16972546664420378999999875567962556652233899999999999999976580179999999999999999
Q ss_pred HCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 609998893-4379999999999999998522287666665544555204577678989852004988877448999999
Q 003736 303 SYGEITESK-AGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAI 381 (799)
Q Consensus 303 ~lg~~~~~~-~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~~~~p~~~l~~~dI~~~I 381 (799)
++|+++++. .++..+|++++++|+..|.++|+|.+.+.++.+++|||||+++|++.|+..+.++++.+.+++++|+++|
T Consensus 333 ~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i 412 (772)
T 3zvr_A 333 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAI 412 (772)
T ss_dssp HHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 84788999867899999999999999999992788877676557797053144878868998627973223399999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 95249997788897689999999998733619999999999999999753210125515799999999999999716339
Q 003736 382 QNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPS 461 (799)
Q Consensus 382 ~n~~G~~~~lFvp~~~Fe~Lvk~qI~~l~~Psl~cv~~V~~eL~~i~~~~~~~~l~rfp~L~~~i~~vv~~~L~~~~~~a 461 (799)
+|++|+++++|+|+.+||.||++||++|++||++|++.|+++|.+++++|. .+|.|||+|++++.+++.++|++++.+|
T Consensus 413 ~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~-~~l~RfP~Lr~ei~~iv~~~Lre~~~~t 491 (772)
T 3zvr_A 413 KNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRT 491 (772)
T ss_dssp HHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG-GGGTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 967798888878189999999999998888999999999999999999999-8860158999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999997223588998876612799999996431589998545789999999998500133689897541254457
Q 003736 462 ETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMAD 541 (799)
Q Consensus 462 ~~~I~~Li~~E~~yinT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (799)
+++|.+||+||++||||+||||+|+++|+..+.+..+....+... ......++|+..++.+.+.+
T Consensus 492 ~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~~~~~~~ 556 (772)
T 3zvr_A 492 KEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQD---------------EILVIRKGWLTINNIGIMKG 556 (772)
T ss_dssp HHHHHHHHHHHHTCCCTTCTTCCCC------------------------------------CCEEEEEEEEESSSCCC--
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCCC---------------CCCCEEEEEEEECCCCCCCC
T ss_conf 999999999864887889856514378999888775225666786---------------43201123455314443348
Q ss_pred CC--------------CCCCHHHCCC--CCCC-----CCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CH
Q ss_conf 89--------------8861000014--7899-----999998---86444458999988888776678999998---20
Q 003736 542 QG--------------VRPTVEVEKV--APAG-----NTSGSS---WGISSIFGGSDNRVPAGKESVTNKPFSEP---VQ 594 (799)
Q Consensus 542 ~~--------------~~~~~~~~~~--~~~~-----~~~~~~---~g~~~~~~~~~~~~~~~k~~~~~~~~~~~---~~ 594 (799)
.+ ++...+.++. .+.. ....+| .++..+|+.... +.. |+..+....++. .+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 634 (772)
T 3zvr_A 557 GSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQR-NVY-KDYRQLELACETQEEVD 634 (772)
T ss_dssp -CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSS-CSB-TTBSEEEEEESSHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-CCC-CHHHHHHHHCCCCCCCH
T ss_conf 8753023203222332355022002334556665554032123445664135577544-431-00456655204521100
Q ss_pred HHHHHHHHHCCC---------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 035567642037---------------99965799999714678999999999999999999999654999999999999
Q 003736 595 NVEHAFAMIHLR---------------EPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNH 659 (799)
Q Consensus 595 ~~~~~~~~~~l~---------------~~p~~l~~~~~~s~~e~~ei~~ir~li~SYf~IVrK~i~D~VPKaImhfLVn~ 659 (799)
++..++ .+.+ .+|.....+..+++++.+||++||+||+|||+||+|+|+|+|||||||||||+
T Consensus 635 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~ 712 (772)
T 3zvr_A 635 SWKASF--LRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINN 712 (772)
T ss_dssp HHHHHH--HHTTCCBC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 467766--414668865655544356688654544567887999999999999999999999889987799999999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9899999999998343236552089989899999999999999999997712566311
Q 003736 660 TKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDELPLEAD 717 (799)
Q Consensus 660 ~k~~Lq~eLi~~LY~~~~~~eLL~E~~~ia~kR~~~~~~l~~LkqA~~iL~~i~~~~~ 717 (799)
+|+++|+||+++||+++++++||+|++++++||++|++|+++|++|..||++|.+.+.
T Consensus 713 ~k~~~~~el~~~ly~~~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~~~ 770 (772)
T 3zvr_A 713 TKEFIFSELLANLYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTV 770 (772)
T ss_dssp HHHHHHHTHHHHHHHTCCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999998664678988726999999999999999999999999874624312
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=1.00 E-value=1 Score=764.46 Aligned_cols=554 Identities=29% Similarity=0.446 Sum_probs=482.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 88855569999999999997099999999879999369998889998983999887779854551079982367885331
Q 003736 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEY 98 (799)
Q Consensus 19 ~~~~~~l~~~~~~l~d~~~~~g~~~~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~~Tr~P~~i~l~~~~~~~~~ 98 (799)
....+...++++ +.|.++.+|++..+++|+|+|||.++|||||||++|+|. +.|+++|.||+++..+.+.+.+....|
T Consensus 18 ~~~~~~~r~ll~-~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~ 95 (608)
T 3szr_A 18 SQYEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKW 95 (608)
T ss_dssp --CHHHHHHHHH-HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCC
T ss_pred HHHHHHHHHHHH-HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 877899999999-999999679997610785899889998299999999689-878999769995889787217866132
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCE-------------
Q ss_conf 1010379--9732482689999998542202899875546258998249855789995899988891-------------
Q 003736 99 GEFLHLP--GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV------------- 163 (799)
Q Consensus 99 ~~~~~~~--~~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~~------------- 163 (799)
...+... ...++++..+.+.|........+.+.+++..++.+.+.+|+.|+|+|+|+||+...++
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~ 175 (608)
T 3szr_A 96 RGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKT 175 (608)
T ss_dssp EEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 45886236644679878999999999998558762202678999861788876367407875336567999899999999
Q ss_pred ---------------EECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHH--HHHHHHCCCCCCCCCEEEEEC
Q ss_conf ---------------760898778089999998709899928999416888887212--887440664344420679870
Q 003736 164 ---------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVN 226 (799)
Q Consensus 164 ---------------V~~a~~d~~~s~al~la~~~dp~g~RtigViTK~Dl~d~gtd--~~~iL~g~~~~L~lG~~~V~n 226 (799)
+++++.|+++++++++++.+++.|.|||||+||+|+++.|++ +.+++.|+.++|++||++|+|
T Consensus 176 li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~n 255 (608)
T 3szr_A 176 LIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKC 255 (608)
T ss_dssp HHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCC
T ss_pred HHHHHHHCCCCCCEEEEECCCHHCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 99999855788723897055003008999999987562992599965445327665799999981755566730799961
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8735543131099999999962068994123445--78913899999999999898316472899999999999998860
Q 003736 227 RSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 304 (799)
Q Consensus 227 rs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~--~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~l 304 (799)
|++.|+..+.++.+++..|++||.+||||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.++++||.+|
T Consensus 256 r~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~l 335 (608)
T 3szr_A 256 RGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKY 335 (608)
T ss_dssp SCTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86443125788799999999987069633224750351389999999999999999765899999999999999999972
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHH
Q ss_conf 99988-9343799999999999999985222876666655445552045776789898520-049888774489999999
Q 003736 305 GEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLE-EVDPCEDLTDDDIRTAIQ 382 (799)
Q Consensus 305 g~~~~-~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~-~~~p~~~l~~~dI~~~I~ 382 (799)
|++++ +..+++.+|++++++|++.|.++++|.+.. ...++..+++++.+|+. |...+. ..++.....+++|+++++
T Consensus 336 g~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~-~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 413 (608)
T 3szr_A 336 GVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETV-GEEDIRLFTRLRHEFHK-WSTIIENNFQEGHKILSRKIQKFEN 413 (608)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-CTTCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 899999999999999999999999999994888767-87512299999999999-9998643134321669999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52499977888976899999999987336199999999999999997532101255157999999999999997163399
Q 003736 383 NATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSE 462 (799)
Q Consensus 383 n~~G~~~~lFvp~~~Fe~Lvk~qI~~l~~Psl~cv~~V~~eL~~i~~~~~~~~l~rfp~L~~~i~~vv~~~L~~~~~~a~ 462 (799)
|++|+++|+|+|+.+||.||++||++|++|+++|++.|++++..++..+..++|.|||+|++++.+++.++++++..+|+
T Consensus 414 ~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~ 493 (608)
T 3szr_A 414 QAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGE 493 (608)
T ss_dssp HCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75698888884589999999999999998899999999999999999999999734348999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999972235889988766127999999964315899985457899999999985001336898975412544578
Q 003736 463 TMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQ 542 (799)
Q Consensus 463 ~~I~~Li~~E~~yinT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (799)
++|.++|+||+.| ||+||+|. .. .
T Consensus 494 ~~i~~li~mE~~~-~~~d~~~~--------------~~-----------------------------------------~ 517 (608)
T 3szr_A 494 KLIRLHFQMEQIV-YGAFQSSS--------------AT-----------------------------------------D 517 (608)
T ss_dssp HHHHHHHHHHHHC-CCC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHCC-CCCCCCCC--------------CC-----------------------------------------C
T ss_conf 9999999985351-14786546--------------78-----------------------------------------7
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 98861000014789999999886444458999988888776678999998200355676420379996579999971467
Q 003736 543 GVRPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQE 622 (799)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e 622 (799)
. +.
T Consensus 518 ----------------~-----------------------------------------------------------~~-- 520 (608)
T 3szr_A 518 ----------------S-----------------------------------------------------------SM-- 520 (608)
T ss_dssp ----------------------------------------------------------------------------CT--
T ss_pred ----------------C-----------------------------------------------------------CH--
T ss_conf ----------------6-----------------------------------------------------------39--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999996549999999999999899999999998343236552089989899999999999999
Q 003736 623 NVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVL 702 (799)
Q Consensus 623 ~~ei~~ir~li~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~ia~kR~~~~~~l~~L 702 (799)
.| |+.+|+|||+||+||++|+|||+|||||||++++.||++|++.||+.+.+++||+|+++|++||++|++++++|
T Consensus 521 -~e---i~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~~~~~~L 596 (608)
T 3szr_A 521 -EE---IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARL 596 (608)
T ss_dssp -TH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf -99---99999999999999999876799999999999999999999998562438988689989999999999999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999771256
Q 003736 703 QQAFRTLDELP 713 (799)
Q Consensus 703 kqA~~iL~~i~ 713 (799)
++|+++|.+|+
T Consensus 597 ~~A~~~l~~~~ 607 (608)
T 3szr_A 597 TQARRRLAQFP 607 (608)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHCC
T ss_conf 99999997348
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=1.00 E-value=1 Score=373.73 Aligned_cols=291 Identities=48% Similarity=0.765 Sum_probs=268.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--------CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 5556999999999999709999--------99998799993699988899989839998877798545510799823678
Q 003736 22 GGSVIPLVNKLQDIFAQLGSQS--------TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK 93 (799)
Q Consensus 22 ~~~l~~~~~~l~d~~~~~g~~~--------~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~~Tr~P~~i~l~~~~ 93 (799)
|+++|+++|+|++++..+|... .+++|+|+|||++|+|||||||+|+|.+|+|++.++|||+|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 90178899999999986075421012101125688799989999868999999968874788898556766599984378
Q ss_pred CC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCE---------
Q ss_conf 85-33110103799732482689999998542202899875546258998249855789995899988891---------
Q 003736 94 TD-EEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV--------- 163 (799)
Q Consensus 94 ~~-~~~~~~~~~~~~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~~--------- 163 (799)
.. ..|+.|.+.++..+.||++++.++..++....|.+.+|+.+++.+++++|..++++||||||+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 76330111003788633788999999999998851888875664279998179999848998999885776788666999
Q ss_pred -------------------EECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf -------------------7608987780899999987098999289994168888872128874406643444206798
Q 003736 164 -------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 224 (799)
Q Consensus 164 -------------------V~~a~~d~~~s~al~la~~~dp~g~RtigViTK~Dl~d~gtd~~~iL~g~~~~L~lG~~~V 224 (799)
+.+++.+..+++++.+++.+++.+.++|+|+||+|++++++++.+++.+...++++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEE
T ss_conf 99999999862477699984046677677899999997442389789998577657873208999707410035885999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 70873554313109999999996206899412344578913899999999999898316472899999999999998860
Q 003736 225 VNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 304 (799)
Q Consensus 225 ~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~l 304 (799)
+++++.+++...++.++...|..||.++|+|..+..++|+..|+++|+++|.+||++.||.++.+|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97896770467789999999999863797646505200799999999999999999986999999999999999999982
Q ss_pred CCCCCCHH
Q ss_conf 99988934
Q 003736 305 GEITESKA 312 (799)
Q Consensus 305 g~~~~~~~ 312 (799)
|++++++.
T Consensus 321 g~~~~~~~ 328 (360)
T 3t34_A 321 GKPIAHGT 328 (360)
T ss_dssp --------
T ss_pred CCCCCCCH
T ss_conf 99999998
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=1.00 E-value=1 Score=358.42 Aligned_cols=309 Identities=57% Similarity=0.897 Sum_probs=283.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 85556999999999999709999999987999936999888999898399988777985455107998236788533110
Q 003736 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (799)
Q Consensus 21 ~~~~l~~~~~~l~d~~~~~g~~~~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~~Tr~P~~i~l~~~~~~~~~~~ 100 (799)
.++.|++++|+|+|.++.+|....+++|+|+|||.+|+|||||+|+|+|.+|+|++.++||++|+++++.+.+ .+|++
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~--~~~~~ 82 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT--TEYAE 82 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS--SCEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC--CCCEE
T ss_conf 4889999999999999971887778887389988989978999999868985787788434555599997078--52124
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCE-----------------
Q ss_conf 103799732482689999998542202899875546258998249855789995899988891-----------------
Q 003736 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV----------------- 163 (799)
Q Consensus 101 ~~~~~~~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~~----------------- 163 (799)
|++.+++.+++++++..+|+.+++++.|.+.+++..++.+++++|+..+++||||||+.+.+.
T Consensus 83 ~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~ 162 (353)
T 2x2e_A 83 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 162 (353)
T ss_dssp ETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 55348865589999999999999974266777466744899836999983899799988776677860488999999999
Q ss_pred -----------EECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCHHHH
Q ss_conf -----------760898778089999998709899928999416888887212887440664344420679870873554
Q 003736 164 -----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 232 (799)
Q Consensus 164 -----------V~~a~~d~~~s~al~la~~~dp~g~RtigViTK~Dl~d~gtd~~~iL~g~~~~L~lG~~~V~nrs~~di 232 (799)
|++++.++.+++++++++.+++.+.++|+|+||+|+++.+.++.+++.++.+++++||+.|.+.|+.+.
T Consensus 163 ~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 163 FVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC
T ss_conf 97588819999952887655169999999837279946999514224686406999982875445678258996770102
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 31310999999999620689941234457891389999999999989831647289999999999999886099988934
Q 003736 233 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKA 312 (799)
Q Consensus 233 ~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~ 312 (799)
..-..+.+++..|..||..++.|.....++|+..|.+.|.+.|..|++..||.++.+|+..+..++.++++||+.++++.
T Consensus 243 ~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~ 322 (353)
T 2x2e_A 243 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKH 322 (353)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 23543899999999986069853411776389999999999999999998799999999999999999997158788851
Q ss_pred -H--HHHHHHHHHHHHHHHHHH
Q ss_conf -3--799999999999999985
Q 003736 313 -G--QGALLLNILSKYSEAFSS 331 (799)
Q Consensus 313 -~--~~~~ll~~~~~f~~~~~~ 331 (799)
. ++.+|++++++|++.|..
T Consensus 323 ~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 323 GTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2346999999999999999987
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=332.14 Aligned_cols=264 Identities=17% Similarity=0.225 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH----HHHHHHHHHHCC
Q ss_conf 3437999999999999999852228766666554455520457767898985200498887744----899999995249
Q 003736 311 KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTD----DDIRTAIQNATG 386 (799)
Q Consensus 311 ~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~~~~p~~~l~~----~dI~~~I~n~~G 386 (799)
..++..||+..++.|.+.+.+.+.|.... ..|++||...++..|.+|...++....... ++|....++++|
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rG 77 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRG 77 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEECC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 88999999999999999999980700012-----6885158999999999999987661441678899999999987068
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99778889768999999999873361999999999999999975321012551579999999999999971633999999
Q 003736 387 PKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIG 466 (799)
Q Consensus 387 ~~~~lFvp~~~Fe~Lvk~qI~~l~~Psl~cv~~V~~eL~~i~~~~~~~~l~rfp~L~~~i~~vv~~~L~~~~~~a~~~I~ 466 (799)
+++|||+|+.+||.||++||++|++||++|++.|++++.+++.+++..+|.|||+|++.+.+++.+++.+|..+|++||+
T Consensus 78 rELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~ 157 (271)
T 3ljb_A 78 RELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIR 157 (271)
T ss_dssp -----CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66678998579999999999999989999999999999999999989998450789999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999722358899887661279999999643158999854578999999999850013368989754125445789886
Q 003736 467 HIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRP 546 (799)
Q Consensus 467 ~Li~~E~~yinT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (799)
++|+||+ ++||+|..|.++.+.+ +. ++. ++++.
T Consensus 158 ~~~~mE~-~vytqD~~Y~~~l~~~-------r~----------~~~-~~~~~---------------------------- 190 (271)
T 3ljb_A 158 LHFQMEQ-IVYCQDQVYRGALQKV-------RE----------KEL-EEEKK---------------------------- 190 (271)
T ss_dssp HHHHHHT-SCC---------------------------------------------------------------------
T ss_pred HHHHHHC-CCCCCCHHHHHHHHHH-------HH----------HHH-CCCCC----------------------------
T ss_conf 9999825-6006989999998999-------99----------873-51113----------------------------
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCH-HHHHH
Q ss_conf 10000147899999998864444589999888887766789999982003556764203799965799999714-67899
Q 003736 547 TVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSE-QENVE 625 (799)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~-~e~~e 625 (799)
. ...+.|. ... ..+. ..+.|
T Consensus 191 -----~------~~~~~~~-----~~~-------------------------------------------~~~~~~~~~E 211 (271)
T 3ljb_A 191 -----K------KSWDFGA-----FQS-------------------------------------------SSATDSSMEE 211 (271)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred -----C------CCCCCCC-----CCC-------------------------------------------CCCCCCHHHH
T ss_conf -----5------5555555-----567-------------------------------------------8776542999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHH
Q ss_conf 999999999999999999965499999999999998999999999983432365520899898
Q 003736 626 IAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEV 688 (799)
Q Consensus 626 i~~ir~li~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~i 688 (799)
|..+|.|||+||+||++|+|||+||||||+.+++.||++|+..||.++.+++||+|++++
T Consensus 212 ---i~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 212 ---IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCC
T ss_conf ---999999999999999998721999999999999999999999985614578986699999
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=1.00 E-value=1 Score=291.00 Aligned_cols=281 Identities=58% Similarity=0.971 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC------CCC
Q ss_conf 55699999999999970999999998799993699988899989839998877798545510799823678------853
Q 003736 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK------TDE 96 (799)
Q Consensus 23 ~~l~~~~~~l~d~~~~~g~~~~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~~Tr~P~~i~l~~~~------~~~ 96 (799)
+.||+++|+|+|+++.+|.. .+++|+|+|||.+|+|||||+|+|+|.+++|++.++||++|+++++.+.+ ...
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~ 79 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHCCCC-CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHH
T ss_conf 94678999999999976998-77888599985898889999999978984778898215211799998579765521123
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCC--------------
Q ss_conf 311010379973248268999999854220289987554625899824985578999589998889--------------
Q 003736 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP-------------- 162 (799)
Q Consensus 97 ~~~~~~~~~~~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~-------------- 162 (799)
.|+++.+.+++.+.+|.++.+++..++.++.|.+.+++.+++++++++|+...++||||||+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 159 (315)
T 1jwy_B 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR 159 (315)
T ss_dssp CEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 45564236665558999999999999987418787705760799996699998189979997667788875468999999
Q ss_pred -----------E--EEC-CCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf -----------1--760-89877808999999870989992899941688888721288744066434442067987087
Q 003736 163 -----------V--VTP-ANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 228 (799)
Q Consensus 163 -----------~--V~~-a~~d~~~s~al~la~~~dp~g~RtigViTK~Dl~d~gtd~~~iL~g~~~~L~lG~~~V~nrs 228 (799)
. |++ ++.++...+.+.+++.+++.+.++++|+||+|+++...+..+.+.+...+++++|+.|.+.+
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred HHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 99999708985999998467665534999999972889985799975743578644799998388756787859986278
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 3554313109999999996206899412344578913899999999999898316472899999999999998860
Q 003736 229 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 304 (799)
Q Consensus 229 ~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~l 304 (799)
...+.....+.+....+.+||..+++|..+..+.|...|...|.+.+..+++..+|.++.+|+..+.+++++|++|
T Consensus 240 a~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 240 QEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5553047888999999999982798645603043889999999999999999871789999999999999999729
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=1.00 E-value=1 Score=267.71 Aligned_cols=271 Identities=62% Similarity=0.979 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 55569999999999997099999999879999369998889998983999887779854551079982367885331101
Q 003736 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (799)
Q Consensus 22 ~~~l~~~~~~l~d~~~~~g~~~~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~~Tr~P~~i~l~~~~~~~~~~~~ 101 (799)
|+.|++++++|+|.++.+|.....++|+|+|||.+|+|||||+|+|+|..++|++.++||++|+++++.+.. ..|+++
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~--~~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--SCEEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC--CCCCHH
T ss_conf 977999999999999965987778788599990898879999999978885788998420565699996377--542023
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCC----------E--------
Q ss_conf 0379973248268999999854220289987554625899824985578999589998889----------1--------
Q 003736 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP----------V-------- 163 (799)
Q Consensus 102 ~~~~~~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~----------~-------- 163 (799)
.+..|..+++++.+...++..+.++.|.+.+++...+.+++++|+...++||||||+.... .
T Consensus 79 ~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 2aka_B 79 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 158 (299)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 30388624799999999999998742667870566069999688999956986999777767777702789999999999
Q ss_pred ----------EECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
Q ss_conf ----------7608987780899999987098999289994168888872128874406643444206798708735543
Q 003736 164 ----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 233 (799)
Q Consensus 164 ----------V~~a~~d~~~s~al~la~~~dp~g~RtigViTK~Dl~d~gtd~~~iL~g~~~~L~lG~~~V~nrs~~di~ 233 (799)
|++++.++..++.+.+++.+++.+.++++|+||+|+++.+.+..+.+.+....+++||+.+.+.|..+..
T Consensus 159 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCHHHCC
T ss_conf 72789599999437850445599999997188998289998765257888449999838867677872799888812233
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 1310999999999620689941234457891389999999999989831647289999999
Q 003736 234 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 294 (799)
Q Consensus 234 ~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l 294 (799)
.-..+.+.+..|..||...+.|.....++|+..|.+.|.+.+..|+++.+|.++.+|+.++
T Consensus 239 gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 239 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3335899999999998469964434444089999999999999999988279999998549
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=1.00 E-value=1 Score=153.28 Aligned_cols=172 Identities=21% Similarity=0.250 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 56999999999999709999999987999936999888999898399988777985455107998236788533110103
Q 003736 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLH 103 (799)
Q Consensus 24 ~l~~~~~~l~d~~~~~g~~~~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~~Tr~P~~i~l~~~~~~~~~~~~~~ 103 (799)
.+...+.+|...+..+- -.-++|+|+|.+|+|||||+|+|+|.+++|++.++||++|+.+.+..... ....+
T Consensus 50 ~l~~~l~~L~~~~~~l~----~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~--~t~~~-- 121 (695)
T 2j69_A 50 SLERDIEDITIASKNLQ----QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKK--VTIHF-- 121 (695)
T ss_dssp CCHHHHHHHHHHHHHHH----HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCE--EEEEE--
T ss_pred HHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCE--EEEEE--
T ss_conf 79999999999998711----58987999879999799999999588878889998866607997089871--79997--
Q ss_pred CCCC--CCCCHHHHHHHHH---HHHHHHCCCCCCCCCCCEEEEEECCCC---CCEEEEECCCCCCCC-------------
Q ss_conf 7997--3248268999999---854220289987554625899824985---578999589998889-------------
Q 003736 104 LPGK--RFYDFSEIRREIQ---AQTDKEAGGNKGVSDKQIRLKIFSPHV---LDITLVDLPGITKVP------------- 162 (799)
Q Consensus 104 ~~~~--~~~d~~~i~~~i~---~~~~~~~g~~~~~s~~~i~l~i~~p~~---~~LtlVDlPGi~~~~------------- 162 (799)
..+. ...++..+...+. .+.......+.........++|+.|.. .+++||||||+....
T Consensus 122 ~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~a 201 (695)
T 2j69_A 122 NDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNC 201 (695)
T ss_dssp SSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 69986400576666444137899999886315545666507999726123048859998999996056899999999719
Q ss_pred -E---EECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
Q ss_conf -1---7608987780899999987098999289994168888872
Q 003736 163 -V---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 203 (799)
Q Consensus 163 -~---V~~a~~d~~~s~al~la~~~dp~g~RtigViTK~Dl~d~g 203 (799)
. |++++..+...+...+.+.+...+.++++|+||+|+....
T Consensus 202 D~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 202 HAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp SEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 989999858986666699999999985199889999785666654
No 9
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=1.00 E-value=1 Score=97.65 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 9987999936999888999898399988--77798545510799823678853311010379973-24826899999985
Q 003736 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL--PRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQ 122 (799)
Q Consensus 46 ~lPqIvVVG~qSsGKSSlLeaL~G~~~l--P~~~~~~Tr~P~~i~l~~~~~~~~~~~~~~~~~~~-~~d~~~i~~~i~~~ 122 (799)
..|.|+|+|..++|||||+|+|+|..+. +++..++|.+.+.+...... . . .++.. ..+... .+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~--~----i--~~g~~l~~~~~~---~~~-- 130 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETE--G----T--VPGNALVVDPEK---PFR-- 130 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSS--E----E--ECCC----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCC--C----C--CCCCEEEECCCC---CHH--
T ss_conf 78479998999998999999996776655746788753168999989966--5----3--578501205764---578--
Q ss_pred HHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCC------------E-------------EECCCC-CCCHHHH
Q ss_conf 4220289987554625899824985578999589998889------------1-------------760898-7780899
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP------------V-------------VTPANS-DLANSDA 176 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~------------~-------------V~~a~~-d~~~s~a 176 (799)
.+...+..+....+++.+.++....++||||||+.... . |++++. ++...+
T Consensus 131 --~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~- 207 (550)
T 2qpt_A 131 --KLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF- 207 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-
T ss_pred --HHHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHH-
T ss_conf --87651442346614871266665878999894999853037998865999999999759989999968767888779-
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf 99998709899928999416888887
Q 003736 177 LQIAGIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 177 l~la~~~dp~g~RtigViTK~Dl~d~ 202 (799)
..+++.+...+.++++|+||+|+++.
T Consensus 208 ~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 208 SEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 99999998459988999979876579
No 10
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=1.00 E-value=1 Score=86.38 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999987999936999888999898399988777985-4551079982367885331101037997324826899999985
Q 003736 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (799)
Q Consensus 44 ~i~lPqIvVVG~qSsGKSSlLeaL~G~~~lP~~~~~-~Tr~P~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~i~~~i~~~ 122 (799)
....|.|++||..++|||||+|+|+|..+..+...+ +|+..
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~-------------------------------------- 61 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR-------------------------------------- 61 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------C--------------------------------------
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEE--------------------------------------
T ss_conf 459998999999998399999999677874448999965657--------------------------------------
Q ss_pred HHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCE----------------------EECCCCCCCHHHHHHHH
Q ss_conf 42202899875546258998249855789995899988891----------------------76089877808999999
Q 003736 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV----------------------VTPANSDLANSDALQIA 180 (799)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDlPGi~~~~~----------------------V~~a~~d~~~s~al~la 180 (799)
....+... ...+.|+||||+..... |+++...+...+ ..++
T Consensus 62 ---------------~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~ 124 (456)
T 4dcu_A 62 ---------------IYSSAEWL-NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVA 124 (456)
T ss_dssp ---------------EEEECTTC-SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHH
T ss_pred ---------------EEEEEEEC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH-HHHH
T ss_conf ---------------99999978-936999978887776117899999999866865999999971788997578-9999
Q ss_pred HHCCCCCCCEEEEEECCCCCCC
Q ss_conf 8709899928999416888887
Q 003736 181 GIADPDGYRTIGIITKLDIMDR 202 (799)
Q Consensus 181 ~~~dp~g~RtigViTK~Dl~d~ 202 (799)
+.+...+.+.|.|+||+|+.+.
T Consensus 125 ~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 125 KILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHTTCCSCEEEEEECC-----
T ss_pred HHHHHCCCCEEEEEECCCCHHH
T ss_conf 9999759988999979224024
Done!