BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003738
(799 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94927|HAUS5_HUMAN HAUS augmin-like complex subunit 5 OS=Homo sapiens GN=HAUS5 PE=1
SV=2
Length = 633
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 26 RPLGSYSSTSM----KANAPNADTIRKICRGNMIPIWGFLLKRVKSEKTVESIRKNIMVH 81
R LG ++ M A AP + T+R++C G IW ++L+ V S++TV+ IR N++ +
Sbjct: 8 RELGCWAVEEMGVPVAARAPES-TLRRLCLGQGADIWAYILQHVHSQRTVKKIRGNLLWY 66
Query: 82 GSSGGGESGNLVNLGKEESKSRRGGRRKDKGLGESASGSESREAALNEREMAAKEVERLR 141
G + + L ++ R + D+ L +E+++ A+ + ++ +R
Sbjct: 67 GHQDSPQVRRKLELEAAVTRLRAEIQELDQSLELMERDTEAQDTAMEQARQHTQDTQRRA 126
Query: 142 HIVRRQRKDLR 152
++R Q +R
Sbjct: 127 LLLRAQAGAMR 137
>sp|Q9D786|HAUS5_MOUSE HAUS augmin-like complex subunit 5 OS=Mus musculus GN=Haus5 PE=2
SV=1
Length = 619
Score = 40.0 bits (92), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 16 LEWLQKEMGYRPLGSYSSTSMK---ANAPNADTIRKICRGNMIPIWGFLLKRVKSEKTVE 72
+E QKE R L +++ M+ A P T+R++C IW ++++ V+S++ ++
Sbjct: 1 MELTQKE---RELSRWAAEEMEVPLAARPRESTLRRLCLSQGADIWAYIVQHVRSQRNIK 57
Query: 73 SIRKNIMVHGSSGGGESGNLVNLGKEESKSRRGGRRKDKGLGESASGSESREAALNEREM 132
I+ N++ H + + L ++ R + D+ L SE+++ A+ +
Sbjct: 58 KIQGNLLWHAYQDNPKIHRKLELEATVARLRAENQELDQSLELMDQESEAQDVAMTQTLQ 117
Query: 133 AAKEVERLRHI-------VRRQRKDLRARM 155
+ K+ + + VRRQ++ L+ M
Sbjct: 118 SLKDTQHRALLLQAQAGAVRRQQRGLQDPM 147
>sp|Q40554|EIF3A_TOBAC Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana
tabacum GN=TIF3A1 PE=2 SV=1
Length = 958
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 52 GNMIPIWGFLLKRVKSEKTVESIRKNIMVHGSSGGGESGNLVNLGKEESKSRRGGRRKDK 111
MIP + F V + +V+++R+N + +LVN R RRKD
Sbjct: 471 SKMIPFFDFT---VIEKISVDAVRRNFLAIKVDHMKGLSSLVN---------RVLRRKDS 518
Query: 112 G-----LGESASGSESR------------EAALNEREMAAKEVERL---RHIVRRQRKDL 151
G L ES S + + EA N E+ KE +RL + I+ +++++
Sbjct: 519 GIICLFLAESLSKARTMIYPPAKKAAKLGEALSNLAEIVEKEHKRLLARKSIIEKRKEEQ 578
Query: 152 RARMLEISR-------------EEAERKRMLDERANYRHKQVVLEAYDEQSDEAAKIFAE 198
+LE+ R EEAE+KR+ E R+++++ E D + +EA + E
Sbjct: 579 ERLLLEMERVEETKRRDVQKMTEEAEQKRIAAEYEQRRNQRILKEIEDRELEEAQALLHE 638
Query: 199 YHKRLRQYVNQARDAQRTSVDSSVEVASSFTANSEKEAVYSTVKGTKSADDV 250
KR ++ + ++ + +E+A + +E +K KS D +
Sbjct: 639 AEKRSKRKKKPVLEGEKMTKKVIMELALNEQLRERQEMEKKLLKFAKSMDHL 690
>sp|Q2KNA0|CYTSA_CANFA Cytospin-A OS=Canis familiaris GN=SPECC1L PE=2 SV=1
Length = 1117
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 459 RQFQLDVWSKEREAAGLRASLNTVMSEIQR-LNKLCAERKEAEDSLKKKWKKIEEFDSRR 517
RQFQ D+ + A + A N + SE Q + L EA++ +K K++EE SR+
Sbjct: 747 RQFQADL-----QTAVVIA--NDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRK 799
Query: 518 SELE--TIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDISNSAKDLIDNEV 575
E E +Y + D AA L+ R SS P ++ +SA + +
Sbjct: 800 QEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNPTA 859
Query: 576 SAFYRSPDNSLHMLPSTPQALLEAMGATGSTGP 608
+A R+P + M + P A + M +GP
Sbjct: 860 AAIPRTPLSPSPM-KTPPAAAVSPMQRHSISGP 891
>sp|Q2KN99|CYTSA_RAT Cytospin-A OS=Rattus norvegicus GN=Specc1l PE=2 SV=1
Length = 1118
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 459 RQFQLDVWSKEREAAGLRASLNTVMSEIQR-LNKLCAERKEAEDSLKKKWKKIEEFDSRR 517
RQFQ D+ + A + A N + SE Q + L EA++ +K K++EE SR+
Sbjct: 748 RQFQADL-----QTAVVIA--NDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRK 800
Query: 518 SELE--TIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDISNSAKDLIDNEV 575
E E +Y + D AA L+ R SS P ++ +SA + +
Sbjct: 801 QEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNAAA 860
Query: 576 SAFYRSPDNSLHMLPSTPQALLEAMGATGSTGP 608
+A R+P + M + P A + M +GP
Sbjct: 861 AAIPRTPLSPSPM-KTPPAAAVSPMQRHSISGP 892
>sp|Q2KNA1|CYTSA_PANTR Cytospin-A OS=Pan troglodytes GN=SPECC1L PE=2 SV=1
Length = 1117
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 459 RQFQLDVWSKEREAAGLRASLNTVMSEIQR-LNKLCAERKEAEDSLKKKWKKIEEFDSRR 517
RQFQ D+ + A + A N + SE Q + L EA++ +K K++EE SR+
Sbjct: 747 RQFQADL-----QTAVVIA--NDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRK 799
Query: 518 SELE--TIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDISNSAKDLIDNEV 575
E E +Y + D AA L+ R SS P ++ +SA + +
Sbjct: 800 QEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNPAA 859
Query: 576 SAFYRSPDNSLHMLPSTPQALLEAMGATGSTGP 608
+A R+P + M + P A + M +GP
Sbjct: 860 AAIPRTPLSPSPM-KTPPAAAVSPMQRHSISGP 891
>sp|Q0VKX0|ATPF_ALCBS ATP synthase subunit b OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=atpF PE=3 SV=1
Length = 156
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 154 RMLEISREEA--------ERKRMLDERANYRHKQVVLEAYDEQSDEAAKIFAEYHKRLRQ 205
R LE+++E+A E+ + ++AN R Q+V EA D E ++ A+ H + Q
Sbjct: 52 RDLELAQEKATANLKESKEKAAEIIDQANRRANQIVEEAKDAARAEGERLIAKAHSEIDQ 111
Query: 206 YVNQARDAQRTSV 218
VNQAR+ R V
Sbjct: 112 EVNQAREQLRKDV 124
>sp|Q69YQ0|CYTSA_HUMAN Cytospin-A OS=Homo sapiens GN=SPECC1L PE=1 SV=2
Length = 1117
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 459 RQFQLDVWSKEREAAGLRASLNTVMSEIQR-LNKLCAERKEAEDSLKKKWKKIEEFDSRR 517
RQFQ D+ + A + A N + SE Q + L EA++ +K K++EE SR+
Sbjct: 747 RQFQADL-----QTAVVIA--NDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRK 799
Query: 518 SELE--TIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDISNSAKDLIDNEV 575
E E +Y + D AA L+ R SS P ++ +SA + +
Sbjct: 800 QEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNPAA 859
Query: 576 SAFYRSPDNSLHMLPSTPQALLEAMGATGSTGP 608
+A R+P S + + P A + M +GP
Sbjct: 860 AAIPRTP-LSPSPMKTPPAAAVSPMQRHSISGP 891
>sp|Q2KN98|CYTSA_MOUSE Cytospin-A OS=Mus musculus GN=Specc1l PE=1 SV=1
Length = 1118
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 459 RQFQLDVWSKEREAAGLRASLNTVMSEIQR-LNKLCAERKEAEDSLKKKWKKIEEFDSRR 517
RQFQ D+ + A + A N + SE Q + L EA++ +K K++EE SR+
Sbjct: 748 RQFQADL-----QTAVVIA--NDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRK 800
Query: 518 SELE--TIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDISNSAKDLIDNEV 575
E E +Y + D AA L+ R SS P ++ +SA + +
Sbjct: 801 QEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNAAA 860
Query: 576 SAFYRSPDNSLHMLPSTPQALLEAMGATGSTGP 608
+A R+P S + + P A + M +GP
Sbjct: 861 AAIPRTP-LSPSPMKTPPAAAVSPMQRHSISGP 892
>sp|Q2KN97|CYTSA_CHICK Cytospin-A OS=Gallus gallus GN=SPECC1L PE=2 SV=2
Length = 1118
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 459 RQFQLDVWSKEREAAGLRASLNTVMSEIQR-LNKLCAERKEAEDSLKKKWKKIEEFDSRR 517
RQFQ D+ + A + A N + SE Q + L EA++ +K K++EE SR+
Sbjct: 748 RQFQADL-----QTAVVIA--NDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRK 800
Query: 518 SELE--TIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDISNSAKDLIDNEV 575
E E +Y + D AA L+ R SS P ++ +SA +
Sbjct: 801 QEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPSPAA 860
Query: 576 SAFYRSPDNSLHMLPSTPQALLEAMGATGSTGPEAIAAAEKNASILTARAGARDPSAIPS 635
+ R+P + M + P A + M +GP I+A++ A++ R +
Sbjct: 861 ATIPRTPLSPSPM-KTPPAAAVSPMQRHSISGP--ISASKPLATLTDKRPSYAEIPVQEH 917
Query: 636 ICRISAALQYPAGL 649
+ R S+ PA L
Sbjct: 918 LLRTSST-SRPASL 930
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,825,734
Number of Sequences: 539616
Number of extensions: 11431473
Number of successful extensions: 38947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 539
Number of HSP's that attempted gapping in prelim test: 37579
Number of HSP's gapped (non-prelim): 1643
length of query: 799
length of database: 191,569,459
effective HSP length: 126
effective length of query: 673
effective length of database: 123,577,843
effective search space: 83167888339
effective search space used: 83167888339
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)