Query 003738
Match_columns 799
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 11:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 100.0 4E-162 9E-167 1359.9 64.8 626 10-786 1-632 (632)
2 PF14817 HAUS5: HAUS augmin-li 93.2 25 0.00053 42.5 30.3 80 120-199 78-164 (632)
3 KOG1029 Endocytic adaptor prot 87.4 87 0.0019 39.1 22.6 28 322-349 540-567 (1118)
4 KOG0971 Microtubule-associated 86.6 1E+02 0.0022 39.1 24.9 81 491-577 508-588 (1243)
5 COG4026 Uncharacterized protei 80.4 44 0.00095 36.2 13.8 114 425-547 72-195 (290)
6 PF07825 Exc: Excisionase-like 78.7 1.3 2.8E-05 40.0 1.9 27 15-55 5-31 (77)
7 PF11559 ADIP: Afadin- and alp 76.7 58 0.0013 31.7 12.7 80 123-209 47-126 (151)
8 PF06008 Laminin_I: Laminin Do 68.8 1.2E+02 0.0026 32.2 13.8 160 411-571 79-260 (264)
9 PF09726 Macoilin: Transmembra 58.0 34 0.00073 41.8 8.2 25 552-576 591-615 (697)
10 KOG0996 Structural maintenance 55.2 6.3E+02 0.014 33.4 34.4 92 478-579 835-927 (1293)
11 PF10828 DUF2570: Protein of u 50.2 1.5E+02 0.0033 27.9 9.6 59 478-536 26-95 (110)
12 PF06785 UPF0242: Uncharacteri 36.0 2.1E+02 0.0045 32.9 9.3 73 471-543 142-236 (401)
13 PF12128 DUF3584: Protein of u 36.0 1.1E+03 0.024 30.8 18.0 202 124-348 777-1002(1201)
14 PF04880 NUDE_C: NUDE protein, 34.0 23 0.0005 36.2 1.6 28 124-151 20-47 (166)
15 PF14739 DUF4472: Domain of un 33.4 3.5E+02 0.0076 26.3 9.2 68 129-203 22-89 (108)
16 PRK10361 DNA recombination pro 33.3 7.2E+02 0.016 29.7 13.5 30 503-532 142-182 (475)
17 PF12761 End3: Actin cytoskele 33.0 1.2E+02 0.0025 32.1 6.5 33 473-505 163-195 (195)
18 KOG4807 F-actin binding protei 32.6 5.4E+02 0.012 30.4 11.9 37 326-362 384-421 (593)
19 PF12325 TMF_TATA_bd: TATA ele 32.3 2.8E+02 0.006 27.1 8.5 83 446-528 6-88 (120)
20 PF11180 DUF2968: Protein of u 28.1 7.6E+02 0.016 26.3 12.2 80 129-208 106-185 (192)
21 TIGR03007 pepcterm_ChnLen poly 27.9 5.9E+02 0.013 29.2 11.5 67 470-536 317-383 (498)
22 PF02042 RWP-RK: RWP-RK domain 27.6 36 0.00077 28.9 1.4 26 19-60 21-46 (52)
23 PF10473 CENP-F_leu_zip: Leuci 25.7 7E+02 0.015 25.1 10.9 36 492-527 78-113 (140)
24 cd09238 V_Alix_like_1 Protein- 25.5 9.7E+02 0.021 26.7 17.6 172 292-508 44-223 (339)
25 PF09304 Cortex-I_coil: Cortex 25.3 6.4E+02 0.014 24.7 9.4 58 470-530 16-73 (107)
26 cd09236 V_AnPalA_UmRIM20_like 25.2 1E+03 0.022 26.8 16.7 33 474-506 189-221 (353)
27 PF10473 CENP-F_leu_zip: Leuci 25.2 5.5E+02 0.012 25.9 9.3 50 474-526 70-119 (140)
28 KOG0980 Actin-binding protein 24.1 9.7E+02 0.021 30.9 12.8 57 145-201 357-417 (980)
29 PF13801 Metal_resist: Heavy-m 24.0 4.2E+02 0.0091 23.3 7.7 54 120-173 44-97 (125)
30 PF11932 DUF3450: Protein of u 23.6 6.3E+02 0.014 26.7 10.1 26 121-146 49-74 (251)
31 cd08915 V_Alix_like Protein-in 22.7 1.2E+02 0.0026 33.3 4.7 89 649-770 27-127 (342)
32 PRK09039 hypothetical protein; 21.9 4.5E+02 0.0098 29.5 9.0 71 470-540 46-120 (343)
33 PF07544 Med9: RNA polymerase 21.3 2.1E+02 0.0046 25.9 5.2 57 133-190 26-83 (83)
34 PF12729 4HB_MCP_1: Four helix 21.2 5E+02 0.011 23.8 7.9 88 476-579 85-174 (181)
35 PF12711 Kinesin-relat_1: Kine 20.7 4.4E+02 0.0096 24.7 7.2 33 142-176 51-83 (86)
36 KOG0977 Nuclear envelope prote 20.4 9.2E+02 0.02 29.4 11.4 18 472-489 344-361 (546)
37 TIGR03495 phage_LysB phage lys 20.4 8.9E+02 0.019 24.4 10.5 83 675-769 23-105 (135)
38 TIGR01541 tape_meas_lam_C phag 20.0 1.1E+03 0.024 26.7 11.4 50 177-226 130-187 (332)
39 PF05384 DegS: Sensor protein 20.0 9.6E+02 0.021 24.6 13.6 86 124-209 23-123 (159)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=100.00 E-value=4.2e-162 Score=1359.90 Aligned_cols=626 Identities=39% Similarity=0.560 Sum_probs=569.5
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCcccccCCCCChHHHHhhhhcCCchhhHHHHhhhchhhhHHhHhhceeeecCCCCCCC
Q 003738 10 VQPEAILEWLQKEMGYRPLGSYSSTSMKANAPNADTIRKICRGNMIPIWGFLLKRVKSEKTVESIRKNIMVHGSSGGGES 89 (799)
Q Consensus 10 ~~aeel~rWa~eEMg~~p~g~y~~~~~~~~~Ps~~~lrrlCrGnm~~IW~fli~hV~SqrtV~~IRgNl~~~g~~~~~~~ 89 (799)
.+|+||++||+|||||||. .+||+++|||||+|||+|||+|||+||||+|||++|||||+|||+.+++.
T Consensus 1 ~~a~el~~Wa~eEmg~p~~----------~~P~~~~lrrlC~G~~~~IWkfli~~V~s~rtV~~iRgNl~~~~~~~~~~- 69 (632)
T PF14817_consen 1 QLAEELKRWAQEEMGYPPA----------SLPSDDYLRRLCRGNMAPIWKFLIQHVRSQRTVRKIRGNLLWYGHQQSKE- 69 (632)
T ss_pred CchHHHHHHHHHHhCCCCC----------CCCCHHHHHHHhccCChHHHHHHHHHcCcHhHHHHHHcceeecccccccc-
Confidence 3689999999999999944 57999999999999999999999999999999999999999999885551
Q ss_pred CCccccccccccccccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003738 90 GNLVNLGKEESKSRRGGRRKDKGLGESASGSESREAALNEREMAAKEVERLRHIVRRQRKDLRARMLEISREEAERKRML 169 (799)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Re~~~~ere~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~ 169 (799)
.+ .++|.++++|++|+++|+|||++|++++++|+++|.|+..++++++++.
T Consensus 70 -------------------~~----------~~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~ 120 (632)
T PF14817_consen 70 -------------------RK----------KSRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQML 120 (632)
T ss_pred -------------------ch----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1367777889889999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhHhhhhhhhcccccccccccCCC--Cc
Q 003738 170 DERANYRHKQVVLEAYDEQSDEAAKIFAEYHKRLRQYVNQARDAQRTSVDSSVEVASSFTANSEKEAVYSTVKGTK--SA 247 (799)
Q Consensus 170 ~e~sd~rhrqlLL~Ay~qqc~~~~~~l~e~~krLq~~v~qar~~qr~~~~~~~~~l~~~~rka~~e~~y~~~~~~~--s~ 247 (799)
++++|++||++||+||+++|++++++|+||++||++||++++|++ |+++.|++||++...+ ++
T Consensus 121 ~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~~---------------R~a~~~v~~~~~~sa~~~~~ 185 (632)
T PF14817_consen 121 DKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQDIQ---------------RKAKVEVEFGPSTSASSGSS 185 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhccCceeecCCccchhhhh
Confidence 999999999999999999999999999999999999999555555 5677889999864221 34
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccCC--CCCCChhHHhhhcCCCCCCCCchhHHHHHHHHhcC--ch
Q 003738 248 DDVILIETTRERNIRKGCESLAAHIIDKVHFSFPAYEGN--GIHLNPQLEAMKLGFDFEGEIPDEVRTVIVNCLKN--PP 323 (799)
Q Consensus 248 ~~~~~lE~~~~rdVR~aC~~~~~~l~~~lqslf~a~~g~--~~~~~pql~~~k~g~~~~~~i~de~~~~ve~ll~n--P~ 323 (799)
++.+++||+|+||||+||+++++|| +.|++.|++|+|+ +++.+++++.++.+ ++||+++++ |+
T Consensus 186 ~~~~~lE~~v~rdVR~aC~~~~~fl-q~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------s~vE~v~~~~pP~ 252 (632)
T PF14817_consen 186 DSSLGLEPAVLRDVREACELRAQFL-QSLLESFPAYGSSHAGHRDQRQASYQQWL------------SIVEKVLTNHPPN 252 (632)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHH-HHHhcccccCCCCCCCccchhhhHHHHHH------------hHHHHHHHcCCHH
Confidence 6788999999999999999999999 9999999999998 67777888877774 467777766 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHhhHHHhhhhhcCCcccccCCCCCCCCcchhhccCCcccccCCChhhhhHHHHH
Q 003738 324 QLLQAITAYTLRLKTLISREIEKIDVRADAETLRYKYENNTVMDVSSSDATSPLNYQLYGNGKIGVDAPSRGTQNQLLER 403 (799)
Q Consensus 324 hlL~AL~~~t~r~~~~i~~~t~~iDv~aDaE~LRfryEn~~~~d~sss~~~lp~~~~l~~~g~ig~~~~~~~~~~qL~E~ 403 (799)
|||+||+|||++.+++|+++|++|||++|+|++| |+++|.|++...+|+ +++|+|+
T Consensus 253 ~vL~AL~~la~~~~~~i~~~~~~id~~~D~e~lr-----~~l~d~s~~~~~lps-------------------v~~Llqe 308 (632)
T PF14817_consen 253 HVLQALEHLASRRKAEIRSETESIDVRADAEYLR-----NQLEDVSDESQALPS-------------------VHQLLQE 308 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhh-----hccCCCCCCccccch-------------------HHHHHHH
Confidence 9999999999999999999999999999999999 999998888777764 4566777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccceeeccchhhHHHHHHHHHHHHHHH
Q 003738 404 QKAHVQQFLATEDALNKAAEAKNLCQKLIKRLHGNGDAISSHSLVGATSQNVGSLRQFQLDVWSKEREAAGLRASLNTVM 483 (799)
Q Consensus 404 Q~aHvqqF~ate~alN~aaear~~~q~L~~rL~g~~~~~~~~~~ggs~~~n~~~~~~leLevwakele~agl~Asl~~L~ 483 (799)
+++||++|+++++++|+ ++++ |..+|.+++.+++.+++|+++. +..++|+++||++|++++|+
T Consensus 309 ~~a~v~q~~~e~~~l~~--eaq~----l~~~L~~~~~e~~~~~~~~s~~-----------~al~~ele~~~l~A~l~~L~ 371 (632)
T PF14817_consen 309 QWAHVQQFLAEEDALNK--EAQA----LSQRLQRLLEEIERRLSGSSER-----------EALALELEVAGLKASLNALR 371 (632)
T ss_pred HHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHHccCcchh-----------hHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999977 4444 4455555555555566665442 22367799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhHhHHhhcChHHHHHhhcccccCccchhhcc
Q 003738 484 SEIQRLNKLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDI 563 (799)
Q Consensus 484 se~q~L~k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aLiK~Ns~aka~l~q~p~e~~e~~~~~iiP~~~~V~~~ 563 (799)
++||+|+++|++||+++++|++|||+|+|||++|+++|++||+||||||++|++|+|+|+|+++|+++||||+|++|+++
T Consensus 372 se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~~kl~P~~~~V~~~ 451 (632)
T PF14817_consen 372 SECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQRKLVPQFEAVAPQ 451 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHhcccCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhcccCCCCccCCCCCchhhhHhhhcCCCCCChhHHHHHhhhhHHHHhhhCCCCCCCCcccccccccc
Q 003738 564 SNSAKDLIDNEVSAFYRSPDNSLHMLPSTPQALLEAMGATGSTGPEAIAAAEKNASILTARAGARDPSAIPSICRISAAL 643 (799)
Q Consensus 564 s~~~~d~ie~E~~~F~~~p~~~~~~Lp~~~~~~~e~~~~~~~~g~~a~~~ae~~a~~~~~~a~~r~Psa~pSI~Rls~a~ 643 (799)
|++++|+|++||+||+++| ||+++++.++| .+|+|+++|||||||+++
T Consensus 452 s~~l~~~ie~E~~~f~~~~------l~~Ll~~~~~~--------------------------~~~~P~~~lSI~rl~~~~ 499 (632)
T PF14817_consen 452 SQELRDCIEREVRAFQAIP------LNALLRRRAGG--------------------------LQRDPSADLSIHRLHAAS 499 (632)
T ss_pred HHHHHHHHHHHHHhccccc------HHHHHhhccCC--------------------------CCCCCchhhHHHHhcccC
Confidence 9999999999999999999 77777777776 779999999999999999
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccccHHHHHHHhH
Q 003738 644 QYPAGLEGSDAGLASVLESLEFCLKLRGSEASVLEDLAKAINLVHIRQDLVESGHTLLNHAYRAQQEYERTTNYCLNLAD 723 (799)
Q Consensus 644 ~~~~g~~~~da~L~sll~sL~Fpl~~~~spe~ll~~la~~~~~v~~lrDl~~~~~~~L~~a~~~~~~~~~t~~~ll~~~~ 723 (799)
+| |+||++|||+|+||+| |+||+||+++++.++++.|+||++++++++|.++ .+.++|+||+++|+++++
T Consensus 500 ~~-------~~~l~~l~~~L~fp~~--kapE~ll~~~~~~~~~l~~l~~~l~~~~~~l~~~-~~~~~~~~~~~~ll~~~~ 569 (632)
T PF14817_consen 500 PY-------GASLISLLESLGFPLY--KAPEALLPEAISKAQDLVFLRDQLSLRRSSLLNL-KTQLPPGPTTQALLQRAA 569 (632)
T ss_pred CC-------CchHHHHHHhcCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH-HhcCCCCchHHHHHHHHH
Confidence 99 4999999999999999 9999999999999999999999999999999998 567999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHhhHHHHhhhccccccccchhcCCccHHHHHHH
Q 003738 724 EQEKLVMEKWLPELKTAVLNAQKSLEDCKYVRGLLDEWWEQPASTVVDWVTVDGQNVAAWHNH 786 (799)
Q Consensus 724 eqek~~~e~~lP~Lk~l~~~a~q~Le~c~~V~glv~eWWEQPaq~~l~wv~~~G~~~~qW~~~ 786 (799)
+|||+++|+|||+||+++++|+||||||++|+|+|+|||||||||+||||+|||+||+||++|
T Consensus 570 e~e~~~~e~llP~Lk~~~~~~~q~Le~~~~v~~~v~~WWEQPaq~~lp~~~~~G~sl~qW~~r 632 (632)
T PF14817_consen 570 EQEKEQLERLLPRLKRLVQKAQQALEYCPQVQGAVDEWWEQPAQTALPWELVDGLSLQQWLNR 632 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhcCchhhcCCccHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 2
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=93.23 E-value=25 Score=42.53 Aligned_cols=80 Identities=13% Similarity=0.293 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHH
Q 003738 120 SESREAALNEREMAAKEVERLRHIVRRQRKDLR------ARMLEISREEAERKRMLDERA-NYRHKQVVLEAYDEQSDEA 192 (799)
Q Consensus 120 ~~~Re~~~~ere~l~~eVerLR~eI~~~~k~~k------~~~ld~s~E~~Erq~~~~e~s-d~rhrqlLL~Ay~qqc~~~ 192 (799)
...|+.+.++.+.|..+|.+|+.+|..+.+++. .+|+|.-.+.--|+.+++=-+ .+.+-.-.|.-|.++....
T Consensus 78 ~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~ 157 (632)
T PF14817_consen 78 ARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQ 157 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999999999999999999994 444444333334444444443 3444445666666665555
Q ss_pred HHHHHHH
Q 003738 193 AKIFAEY 199 (799)
Q Consensus 193 ~~~l~e~ 199 (799)
...+++-
T Consensus 158 ~~~~q~~ 164 (632)
T PF14817_consen 158 VEQLQDI 164 (632)
T ss_pred HHHHHHH
Confidence 5544443
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.45 E-value=87 Score=39.12 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhch
Q 003738 322 PPQLLQAITAYTLRLKTLISREIEKIDV 349 (799)
Q Consensus 322 P~hlL~AL~~~t~r~~~~i~~~t~~iDv 349 (799)
--.|-++|..-..++.+++++....||+
T Consensus 540 ke~irq~ikdqldelskE~esk~~eidi 567 (1118)
T KOG1029|consen 540 KELIRQAIKDQLDELSKETESKLNEIDI 567 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456666666666666666666665554
No 4
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.65 E-value=1e+02 Score=39.11 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhHhHHhhcChHHHHHhhcccccCccchhhcchhhhhhh
Q 003738 491 KLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTALLKANMDAAAFWSQQPLAAREYASSTIIPACTVVVDISNSAKDL 570 (799)
Q Consensus 491 k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aLiK~Ns~aka~l~q~p~e~~e~~~~~iiP~~~~V~~~s~~~~d~ 570 (799)
++-+++..+.+.+.-.-|.|..||.++..++++++-|--.|..+....-|.|....+-.-++++- ..+..--..
T Consensus 508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~f------a~skayara 581 (1243)
T KOG0971|consen 508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKF------AESKAYARA 581 (1243)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHH------HHhHHHHHH
Confidence 33455667778888888999999999999999999999999999999988885444444443332 123333445
Q ss_pred HHHHHhh
Q 003738 571 IDNEVSA 577 (799)
Q Consensus 571 ie~E~~~ 577 (799)
|+.++++
T Consensus 582 ie~Qlrq 588 (1243)
T KOG0971|consen 582 IEMQLRQ 588 (1243)
T ss_pred HHHHHHH
Confidence 5555554
No 5
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.36 E-value=44 Score=36.18 Aligned_cols=114 Identities=20% Similarity=0.277 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhhhhhcccccc-ccccccccccceeeccchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 003738 425 KNLCQKLIKRLHGNGDAISSHSLV-GATSQNVGSLRQFQLDVWSKEREAAGLRASLNTVM-----SEIQRLNKLCAERKE 498 (799)
Q Consensus 425 r~~~q~L~~rL~g~~~~~~~~~~g-gs~~~n~~~~~~leLevwakele~agl~Asl~~L~-----se~q~L~k~~~eRke 498 (799)
|....++..-|.|.+-.+++-.+. |-++ -.+.+++-.||++-|-.+|-|+||+ +.+.++..-|.+
T Consensus 72 ReLA~kf~eeLrg~VGhiERmK~PiGHDv------EhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~ke--- 142 (290)
T COG4026 72 RELAEKFFEELRGMVGHIERMKIPIGHDV------EHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKE--- 142 (290)
T ss_pred HHHHHHHHHHHHHhhhhhheeccCCCCCc------cccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH---
Confidence 555666777788888777777777 6553 4567889999999999999999998 223332222222
Q ss_pred HHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHhhchhHhHHhhcChHHHHH
Q 003738 499 AEDSLKK----KWKKIEEFDSRRSELETIYTALLKANMDAAAFWSQQPLAARE 547 (799)
Q Consensus 499 a~~sLq~----KwqrIeeF~~l~~e~q~~i~aLiK~Ns~aka~l~q~p~e~~e 547 (799)
.++++++ -.+..++...-.++.++.+..|=+.||---..+...|.++-.
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~ 195 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYD 195 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 2222222 123455556666667777777777777766667777765443
No 6
>PF07825 Exc: Excisionase-like protein; InterPro: IPR012884 The phage-encoded excisionase protein (Xis, P03699 from SWISSPROT) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual winged-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue wing. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA []. ; GO: 0003677 DNA binding, 0006310 DNA recombination; PDB: 1RH6_B 2IEF_B 2OG0_B 1LX8_A 1PM6_A.
Probab=78.73 E-value=1.3 Score=39.97 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCCCCCCCcccccCCCCChHHHHhhhhcCCc
Q 003738 15 ILEWLQKEMGYRPLGSYSSTSMKANAPNADTIRKICRGNMI 55 (799)
Q Consensus 15 l~rWa~eEMg~~p~g~y~~~~~~~~~Ps~~~lrrlCrGnm~ 55 (799)
|.+|+.++|+.| |+..+||+.|++.+|
T Consensus 5 L~eWa~~~f~~p--------------ps~~TLrrwar~G~I 31 (77)
T PF07825_consen 5 LEEWAEEEFKRP--------------PSIATLRRWARQGRI 31 (77)
T ss_dssp HHHHHHCS-SS-----------------HHHHHHHHHCT-E
T ss_pred HHHHHHhcCCCC--------------CCHHHHHHHHHCCCc
Confidence 789999998877 999999999999887
No 7
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.72 E-value=58 Score=31.67 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 123 REAALNEREMAAKEVERLRHIVRRQRKDLRARMLEISREEAERKRMLDERANYRHKQVVLEAYDEQSDEAAKIFAEYHKR 202 (799)
Q Consensus 123 Re~~~~ere~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~sd~rhrqlLL~Ay~qqc~~~~~~l~e~~kr 202 (799)
|+.-+..+|.+..++.++++++.++..++.. |...++..||+...-+.. .--|..--..-....+...+..+|
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~r--L~~~~~~~ere~~~~~~~-----~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVER--LKEQLEELERELASAEEK-----ERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446667777888888888876666665 667777777766432222 111222223334445555666666
Q ss_pred HHHHHHH
Q 003738 203 LRQYVNQ 209 (799)
Q Consensus 203 Lq~~v~q 209 (799)
++..+++
T Consensus 120 lk~~~~~ 126 (151)
T PF11559_consen 120 LKNQLQQ 126 (151)
T ss_pred HHHHHHH
Confidence 6655553
No 8
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.78 E-value=1.2e+02 Score=32.22 Aligned_cols=160 Identities=15% Similarity=0.192 Sum_probs=81.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccc-----ccceeeccchhhHHHHHHHHHHHHHHHHH
Q 003738 411 FLATEDALNKAAEAKNLCQKLIKRLHGNGDAISSHSLVGATSQNVG-----SLRQFQLDVWSKEREAAGLRASLNTVMSE 485 (799)
Q Consensus 411 F~ate~alN~aaear~~~q~L~~rL~g~~~~~~~~~~ggs~~~n~~-----~~~~leLevwakele~agl~Asl~~L~se 485 (799)
.-+|+.-++.|-+....++.+...++.++..+..-.-.+....+.. .-.+..|+ |-+.|.+.+.+..-+.=..+
T Consensus 79 ~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~-emr~r~f~~~~~~Ae~El~~ 157 (264)
T PF06008_consen 79 NNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLE-EMRKRDFTPQRQNAEDELKE 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHH-HHHhccchhHHHHHHHHHHH
Confidence 4578888888888888888888888888887764332111111110 00111111 11122223333222222333
Q ss_pred HHHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHH----------HHHhhchhHhHHhhcChHHHHHhhc
Q 003738 486 IQRL----NKLCAERKEAEDSLKK-KWKKIEEFDSRRSELETIYT----------ALLKANMDAAAFWSQQPLAAREYAS 550 (799)
Q Consensus 486 ~q~L----~k~~~eRkea~~sLq~-KwqrIeeF~~l~~e~q~~i~----------aLiK~Ns~aka~l~q~p~e~~e~~~ 550 (799)
++.| ++....++...++|.+ =|..|-+|...+.++++.+. .|.+.|...-.....+..++.+.-.
T Consensus 158 A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~ 237 (264)
T PF06008_consen 158 AEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQN 237 (264)
T ss_pred HHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 5555666666777744 47788888888777665543 4555555554444444444333322
Q ss_pred c--cccCccchhhcchhhhhhhH
Q 003738 551 S--TIIPACTVVVDISNSAKDLI 571 (799)
Q Consensus 551 ~--~iiP~~~~V~~~s~~~~d~i 571 (799)
. ..|-..+.....++.+.+.+
T Consensus 238 ~~~~~L~~a~~~L~~a~~ll~~~ 260 (264)
T PF06008_consen 238 EVSETLKEAEDLLDQANDLLQEM 260 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 22333333444444444433
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.97 E-value=34 Score=41.82 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=17.5
Q ss_pred cccCccchhhcchhhhhhhHHHHHh
Q 003738 552 TIIPACTVVVDISNSAKDLIDNEVS 576 (799)
Q Consensus 552 ~iiP~~~~V~~~s~~~~d~ie~E~~ 576 (799)
.++.+-.++.+.+..|-+.|.-|.+
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4566666777777777777777754
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.16 E-value=6.3e+02 Score=33.40 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhHh-HHhhcChHHHHHhhcccccCc
Q 003738 478 SLNTVMSEIQRLNKLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTALLKANMDAA-AFWSQQPLAAREYASSTIIPA 556 (799)
Q Consensus 478 sl~~L~se~q~L~k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aLiK~Ns~ak-a~l~q~p~e~~e~~~~~iiP~ 556 (799)
..++|.+++-.++....-+.--.+.|+.+.+.|++++.-++++| +.++| ++..+.+..+-+.---++=++
T Consensus 835 ~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q---------e~~~Kk~~i~~lq~~i~~i~~e~~q~q 905 (1293)
T KOG0996|consen 835 LIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ---------EKAAKKARIKELQNKIDEIGGEKVQAQ 905 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHhhchhhHHh
Confidence 56778888888888877777777888888899999999998886 44555 666665555555444444444
Q ss_pred cchhhcchhhhhhhHHHHHhhcc
Q 003738 557 CTVVVDISNSAKDLIDNEVSAFY 579 (799)
Q Consensus 557 ~~~V~~~s~~~~d~ie~E~~~F~ 579 (799)
-.. +..++.-.+.++.+++...
T Consensus 906 k~k-v~~~~~~~~~l~~~i~k~~ 927 (1293)
T KOG0996|consen 906 KDK-VEKINEQLDKLEADIAKLT 927 (1293)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhH
Confidence 433 3556666677766666554
No 11
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=50.24 E-value=1.5e+02 Score=27.92 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHhhchhHhH
Q 003738 478 SLNTVMSEIQRLNKLCAERKEAEDSLKKKWKK-----------IEEFDSRRSELETIYTALLKANMDAAA 536 (799)
Q Consensus 478 sl~~L~se~q~L~k~~~eRkea~~sLq~Kwqr-----------IeeF~~l~~e~q~~i~aLiK~Ns~aka 536 (799)
.++.|+.+.....+.......+.+.|+..-+. =.+++...++.++.|+.-||.|.+|.+
T Consensus 26 ~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~Ca~~ 95 (110)
T PF10828_consen 26 RIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDPCANT 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccC
Confidence 44555555555555555555555444432222 246677788899999999999999888
No 12
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.00 E-value=2.1e+02 Score=32.86 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003738 471 EAAGLRASLNTVMSEI-------QRLN----KLCAERKEAEDS-----------LKKKWKKIEEFDSRRSELETIYTALL 528 (799)
Q Consensus 471 e~agl~Asl~~L~se~-------q~L~----k~~~eRkea~~s-----------Lq~KwqrIeeF~~l~~e~q~~i~aLi 528 (799)
|-+.+.+.|+.+..+| |.|+ +..+-.+...++ |.+++--|-..+..|.++-.-|+.|+
T Consensus 142 En~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 142 ENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877 3332 222222333222 55677788889999999999999999
Q ss_pred hhchhHhHHhhcChH
Q 003738 529 KANMDAAAFWSQQPL 543 (799)
Q Consensus 529 K~Ns~aka~l~q~p~ 543 (799)
.--|+.+..+.+.|.
T Consensus 222 Qle~~~~e~~p~~~~ 236 (401)
T PF06785_consen 222 QLESDMKESMPSTPS 236 (401)
T ss_pred HhhhhhhhcCCCCCc
Confidence 999998888888886
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.00 E-value=1.1e+03 Score=30.76 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHhh----hhhhHHHHHHHH
Q 003738 124 EAALNEREMAAKEVERLRHIVRRQRKDLRARMLE--------------ISREEAERKRMLDERA----NYRHKQVVLEAY 185 (799)
Q Consensus 124 e~~~~ere~l~~eVerLR~eI~~~~k~~k~~~ld--------------~s~E~~Erq~~~~e~s----d~rhrqlLL~Ay 185 (799)
+......+..-+.|+.-|..|.+-+++++..-.. ....+.+.+..-++.. +++.+..-|+.-
T Consensus 777 ~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~ 856 (1201)
T PF12128_consen 777 KQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEE 856 (1201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhHhhhhhhhcccccccccc-cCCCCcccccchhhHHHHHHHHH
Q 003738 186 DEQSDEAAKIFAEYHKRLRQYVNQARDAQRTSVDSSVEVASSFTANSEKEAVYSTV-KGTKSADDVILIETTRERNIRKG 264 (799)
Q Consensus 186 ~qqc~~~~~~l~e~~krLq~~v~qar~~qr~~~~~~~~~l~~~~rka~~e~~y~~~-~~~~s~~~~~~lE~~~~rdVR~a 264 (799)
.+.++.....+.++..+|...+. .+.++......+..-+++ .....-.+.+..-..-..+|++.
T Consensus 857 ~~~~~~~~~~~~~~l~~l~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 921 (1201)
T PF12128_consen 857 LKALEEQLEQLEEQLRRLRDLLE---------------KLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKA 921 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------------hhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCChhHHhhhcCCCCCCCC----chhHHHHHHHHhcC-chHHHHHHHHHHHHHHHH
Q 003738 265 CESLAAHIIDKVHFSFPAYEGNGIHLNPQLEAMKLGFDFEGEI----PDEVRTVIVNCLKN-PPQLLQAITAYTLRLKTL 339 (799)
Q Consensus 265 C~~~~~~l~~~lqslf~a~~g~~~~~~pql~~~k~g~~~~~~i----~de~~~~ve~ll~n-P~hlL~AL~~~t~r~~~~ 339 (799)
++ .+.+.|..+.|++...+-+-...+.+|..++.| .-+.......++.+ -|+..+++.......-..
T Consensus 922 ~~--------~f~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~e~~~~~~~~ 993 (1201)
T PF12128_consen 922 VE--------RFKGVLTKHSGSELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDVLIPQQQQALIEQGRNIGND 993 (1201)
T ss_pred HH--------HHHHHHHhccccchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhc
Q 003738 340 ISREIEKID 348 (799)
Q Consensus 340 i~~~t~~iD 348 (799)
|......++
T Consensus 994 i~~f~~~l~ 1002 (1201)
T PF12128_consen 994 ISNFYGVLE 1002 (1201)
T ss_pred HHHHHHHHH
No 14
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.00 E-value=23 Score=36.23 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 124 EAALNEREMAAKEVERLRHIVRRQRKDL 151 (799)
Q Consensus 124 e~~~~ere~l~~eVerLR~eI~~~~k~~ 151 (799)
|..++|+|.|..++-|||.|++.++.|+
T Consensus 20 E~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 20 ESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777655555
No 15
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=33.35 E-value=3.5e+02 Score=26.31 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 129 EREMAAKEVERLRHIVRRQRKDLRARMLEISREEAERKRMLDERANYRHKQVVLEAYDEQSDEAAKIFAEYHKRL 203 (799)
Q Consensus 129 ere~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~sd~rhrqlLL~Ay~qqc~~~~~~l~e~~krL 203 (799)
=+|+.++|+=.|+++|-+ +.+|+++..+... ....++++.+|+...+.+-.+.....-..+....+.+
T Consensus 22 L~Eq~EaE~FELk~~vL~----lE~rvleLel~~~---~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~a~ 89 (108)
T PF14739_consen 22 LREQHEAEKFELKNEVLR----LENRVLELELHGD---KAAPQIADLRHRLAEAQEDRQELQEEYVSLKKNYQAL 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcc---hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888887 5666777665543 6778888999999999887776666555444444333
No 16
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.29 E-value=7.2e+02 Score=29.68 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHh-----------HHHHHHHHHhhch
Q 003738 503 LKKKWKKIEEFDSRRSE-----------LETIYTALLKANM 532 (799)
Q Consensus 503 Lq~KwqrIeeF~~l~~e-----------~q~~i~aLiK~Ns 532 (799)
|..=..+|..|+.++.+ +.++|+.|...|.
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNA 182 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667789999999887 4455777766664
No 17
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.97 E-value=1.2e+02 Score=32.14 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 473 AGLRASLNTVMSEIQRLNKLCAERKEAEDSLKK 505 (799)
Q Consensus 473 agl~Asl~~L~se~q~L~k~~~eRkea~~sLq~ 505 (799)
-+++.-+++|..+|.-|+.....|++.+..|++
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467788999999999999999999999999873
No 18
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.56 E-value=5.4e+02 Score=30.37 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hchHhhHHHhhhhhcC
Q 003738 326 LQAITAYTLRLKTLISREIEK-IDVRADAETLRYKYEN 362 (799)
Q Consensus 326 L~AL~~~t~r~~~~i~~~t~~-iDv~aDaE~LRfryEn 362 (799)
.+||++.-.-...+++++.++ -.|-.|++.||-.|-.
T Consensus 384 iSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyle 421 (593)
T KOG4807|consen 384 ISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLE 421 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHH
Confidence 345555544445556665543 3566788888866643
No 19
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.31 E-value=2.8e+02 Score=27.13 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred cccccccccccccceeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003738 446 SLVGATSQNVGSLRQFQLDVWSKEREAAGLRASLNTVMSEIQRLNKLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYT 525 (799)
Q Consensus 446 ~~ggs~~~n~~~~~~leLevwakele~agl~Asl~~L~se~q~L~k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~ 525 (799)
.+..+...|+...-.|.-.+-.+|-|.+.++-.+..|..+-..|.+-.-.=-...+.++..-+++...+....+++..|.
T Consensus 6 ~s~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 6 VSTSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 003738 526 ALL 528 (799)
Q Consensus 526 aLi 528 (799)
+++
T Consensus 86 t~L 88 (120)
T PF12325_consen 86 TLL 88 (120)
T ss_pred HHH
No 20
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=28.12 E-value=7.6e+02 Score=26.33 Aligned_cols=80 Identities=10% Similarity=0.188 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 129 EREMAAKEVERLRHIVRRQRKDLRARMLEISREEAERKRMLDERANYRHKQVVLEAYDEQSDEAAKIFAEYHKRLRQYVN 208 (799)
Q Consensus 129 ere~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~sd~rhrqlLL~Ay~qqc~~~~~~l~e~~krLq~~v~ 208 (799)
+|-.|+++.+.+.-.|......+...-.|.++-...++.|.+.....|.-..-|++-.+....+-+.++.-.+.|+.+.+
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34447777777777777766667776677777777777787777777777777777766666666666555555555554
No 21
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=27.90 E-value=5.9e+02 Score=29.21 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhHhH
Q 003738 470 REAAGLRASLNTVMSEIQRLNKLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTALLKANMDAAA 536 (799)
Q Consensus 470 le~agl~Asl~~L~se~q~L~k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aLiK~Ns~aka 536 (799)
.....+.+.++++..+...|++..++-+.....+..+...+.+....++-.++.|..|++.-..++.
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788888888888888777777777888888888888888888899999999987665554
No 22
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=27.59 E-value=36 Score=28.94 Aligned_cols=26 Identities=35% Similarity=0.737 Sum_probs=22.0
Q ss_pred HHHHcCCCCCCCCCcccccCCCCChHHHHhhhhcCCchhhHH
Q 003738 19 LQKEMGYRPLGSYSSTSMKANAPNADTIRKICRGNMIPIWGF 60 (799)
Q Consensus 19 a~eEMg~~p~g~y~~~~~~~~~Ps~~~lrrlCrGnm~~IW~f 60 (799)
|.++||+. ...|+|+||-.|++=|=|
T Consensus 21 AA~~Lgv~----------------~T~LKr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 21 AAKELGVS----------------VTTLKRRCRRLGIPRWPY 46 (52)
T ss_pred HHHHhCCC----------------HHHHHHHHHHcCCCCCCc
Confidence 56788885 678999999999999966
No 23
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=25.67 E-value=7e+02 Score=25.14 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003738 492 LCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTAL 527 (799)
Q Consensus 492 ~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aL 527 (799)
+-.++......|++++.+|.++..+.......|..+
T Consensus 78 l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 78 LRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345566666777777777777777776665555433
No 24
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=25.47 E-value=9.7e+02 Score=26.72 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=85.3
Q ss_pred hhHHhhhcCCCCCCCCc--hhHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHhhhchHhhH-HHhhhhhcCCcc
Q 003738 292 PQLEAMKLGFDFEGEIP--DEVRTVIVNCLKNPP---QLLQAITAYTLRLKTLISREIEKIDVRADA-ETLRYKYENNTV 365 (799)
Q Consensus 292 pql~~~k~g~~~~~~i~--de~~~~ve~ll~nP~---hlL~AL~~~t~r~~~~i~~~t~~iDv~aDa-E~LRfryEn~~~ 365 (799)
..+++.+.|..+++.+. ++... |. ...++. ..+.-|..+..+....|..-.+.+|-.++. +.+|=+|-. +-
T Consensus 44 ~sl~al~~~~~lp~sl~~~~~~~~-v~-~~gG~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~-rW 120 (339)
T cd09238 44 ETLIALDGGASLPGDLGLDEEVEA-VQ-ISGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGT-AW 120 (339)
T ss_pred HHHHHhcCCCCCCCccchHHHHHH-HH-HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC
Confidence 45556666666666555 54432 11 123344 445555557888888887777777654443 344655544 21
Q ss_pred cccCCCCCCCCcchhhccCCcccccCCChhhhh-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 003738 366 MDVSSSDATSPLNYQLYGNGKIGVDAPSRGTQN-QLLERQKAHVQQFLATEDALNKAAEAKNLCQKLIKRLHGNGDAISS 444 (799)
Q Consensus 366 ~d~sss~~~lp~~~~l~~~g~ig~~~~~~~~~~-qL~E~Q~aHvqqF~ate~alN~aaear~~~q~L~~rL~g~~~~~~~ 444 (799)
--..|+ ..+ .| ..+.-.-..+|+.|.+.-.........-...++.+..
T Consensus 121 tr~pS~------------------------~~~~~l-------~~~i~~~r~~L~~A~~sD~~v~~k~~~~~~~l~~L~~ 169 (339)
T cd09238 121 TRPPSA------------------------TLTKNL-------WERLNRFRVNLEQAGDSDESLRRRIEDAMDGMLILDD 169 (339)
T ss_pred CCCccH------------------------HHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 111111 111 12 1111223556777777666544443333344443321
Q ss_pred ccccccccccccccce-eeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 445 HSLVGATSQNVGSLRQ-FQLDVWSKEREAAGLRASLNTVMSEIQRLNKLCAERKEAEDSLKKKWK 508 (799)
Q Consensus 445 ~~~ggs~~~n~~~~~~-leLevwakele~agl~Asl~~L~se~q~L~k~~~eRkea~~sLq~Kwq 508 (799)
..+ ...-+.+... ..+. -.....+..|+.-+..|+.+-.+|+..++.|+.+-+
T Consensus 170 ~~~---~~~~Ps~~~~~~~l~--------~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~ 223 (339)
T cd09238 170 EPA---AAAAPTLRAPMLSTD--------EDDASIVGTLRSNLEELEALGNERAGIEDMMKALKR 223 (339)
T ss_pred Hhh---HhhCCCCCCcccccC--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 110 0001111111 1111 012345677888888999999999988888866433
No 25
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.29 E-value=6.4e+02 Score=24.68 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 003738 470 REAAGLRASLNTVMSEIQRLNKLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTALLKA 530 (799)
Q Consensus 470 le~agl~Asl~~L~se~q~L~k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aLiK~ 530 (799)
-++++|.-++..+.....+| +.+|.+..-.++.=.+.=..+-+++.++|..|.-++++
T Consensus 16 n~La~Le~slE~~K~S~~eL---~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGEL---AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444 44444444444444444555666666666666555543
No 26
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=25.24 E-value=1e+03 Score=26.75 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 474 GLRASLNTVMSEIQRLNKLCAERKEAEDSLKKK 506 (799)
Q Consensus 474 gl~Asl~~L~se~q~L~k~~~eRkea~~sLq~K 506 (799)
.....+..|+.-+..|+.+-.+|...++.|+.|
T Consensus 189 ~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k 221 (353)
T cd09236 189 ELERHVRALRVSLEELDRLESRRRRKVERARTK 221 (353)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999775
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=25.21 E-value=5.5e+02 Score=25.89 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003738 474 GLRASLNTVMSEIQRLNKLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTA 526 (799)
Q Consensus 474 gl~Asl~~L~se~q~L~k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~a 526 (799)
.+...|++|+++-..|.+.+..-|+-+.+|-.- .-+|..+..+++...+-
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~---~~~~~~~l~~~E~ek~q 119 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESL---NSSLENLLQEKEQEKVQ 119 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 455666667777777777777776666666653 34455555555555333
No 28
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=24.07 E-value=9.7e+02 Score=30.94 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 145 RRQRKDLRARMLEISREEAERKRMLDERA----NYRHKQVVLEAYDEQSDEAAKIFAEYHK 201 (799)
Q Consensus 145 ~~~~k~~k~~~ld~s~E~~Erq~~~~e~s----d~rhrqlLL~Ay~qqc~~~~~~l~e~~k 201 (799)
++.-.-.+++|.+...+..|.++..|+-- ..|+-...|.|..++|+.+...+.|..+
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~ 417 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAEN 417 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33334457777777777777777666554 6677788888899998888855444433
No 29
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.03 E-value=4.2e+02 Score=23.35 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 003738 120 SESREAALNEREMAAKEVERLRHIVRRQRKDLRARMLEISREEAERKRMLDERA 173 (799)
Q Consensus 120 ~~~Re~~~~ere~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~s 173 (799)
++.+++...-++...+++..+|.+++..+.++...|.........=....+++.
T Consensus 44 ~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~ 97 (125)
T PF13801_consen 44 PEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIR 97 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 444555555555577899999999999999998877665555444444444444
No 30
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.61 E-value=6.3e+02 Score=26.73 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 121 ESREAALNEREMAAKEVERLRHIVRR 146 (799)
Q Consensus 121 ~~Re~~~~ere~l~~eVerLR~eI~~ 146 (799)
+.++.++++-+.+.++++.|+..+.+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~ 74 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQ 74 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555
No 31
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=22.65 E-value=1.2e+02 Score=33.35 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHhhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccccHHHHHHHhHHHHHH
Q 003738 649 LEGSDAGLASVLESLEFCLKLRGSEASVLEDLAKAINLVHIRQDLVESGHTLLNHAYRAQQEYERTTNYCLNLADEQEKL 728 (799)
Q Consensus 649 ~~~~da~L~sll~sL~Fpl~~~~spe~ll~~la~~~~~v~~lrDl~~~~~~~L~~a~~~~~~~~~t~~~ll~~~~eqek~ 728 (799)
++..|--|.+.|.+|.+|-- |..+....-.|.. ...|-.......-.
T Consensus 27 ~e~~~~~l~~~L~slnLP~s--------------------------------l~~l~~~~~lP~~-~~~~~~i~~~gg~~ 73 (342)
T cd08915 27 IEALNKLLNSFLAERNLPAS--------------------------------IDDLQKPENLPDS-IQHSQEIIEEGGLD 73 (342)
T ss_pred HHHHHHHHHHHHHHcCCChH--------------------------------HHHhcCCCCCCch-HHHHHHHHccCcHH
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhHHH-----------HhhHHHH-hhhccccccc
Q 003738 729 VMEKWLPELKTAVLNAQKSLEDCKY-----------VRGLLDE-WWEQPASTVV 770 (799)
Q Consensus 729 ~~e~~lP~Lk~l~~~a~q~Le~c~~-----------V~glv~e-WWEQPaq~~l 770 (799)
.++..+..|+.+.+.+...|..|.. .|.-.+. ||-.|.+..+
T Consensus 74 ~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~ 127 (342)
T cd08915 74 NIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEA 127 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHH
No 32
>PRK09039 hypothetical protein; Validated
Probab=21.85 E-value=4.5e+02 Score=29.55 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHhhchhHhHHhhc
Q 003738 470 REAAGLRASLNTVMSEIQRLNKLCAERKEAEDSLKKKWKKI----EEFDSRRSELETIYTALLKANMDAAAFWSQ 540 (799)
Q Consensus 470 le~agl~Asl~~L~se~q~L~k~~~eRkea~~sLq~KwqrI----eeF~~l~~e~q~~i~aLiK~Ns~aka~l~q 540 (799)
.+..|+...|+.|.+++-.|-++..-.+.....|+.....+ ..-.+++.++++.|..+-..++.+..++.+
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~ 120 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHH
Confidence 77889999999999999888877776666655555544433 345556666777666554444444433333
No 33
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.32 E-value=2.1e+02 Score=25.89 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHH
Q 003738 133 AAKEVERLRHIVRRQRKDLRARMLEISREEAERKRMLDERA-NYRHKQVVLEAYDEQSD 190 (799)
Q Consensus 133 l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~s-d~rhrqlLL~Ay~qqc~ 190 (799)
+..++..||..+++.|.-+++ |=|+.+.-.|++....+.- +.+.|.-+|.-|..+|+
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~-lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~~ 83 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRE-LPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERVM 83 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 667777888888876666654 2123333333444333333 67778888888888874
No 34
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=21.22 E-value=5e+02 Score=23.84 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhHhHHhhcChHHHHHhhcccc
Q 003738 476 RASLNTVMSEIQRLNKL--CAERKEAEDSLKKKWKKIEEFDSRRSELETIYTALLKANMDAAAFWSQQPLAAREYASSTI 553 (799)
Q Consensus 476 ~Asl~~L~se~q~L~k~--~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aLiK~Ns~aka~l~q~p~e~~e~~~~~i 553 (799)
......+...+..+.+. -.+-++.++.+++.|+........ ++. +++.|. +.++..+....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~------~~~-~~~~~~---------~~~a~~~~~~~~ 148 (181)
T PF12729_consen 85 DEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQ------VIE-LAKSGD---------NDEARAILNGEA 148 (181)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHCCC---------HHHHHHHHHHhH
Confidence 34444455555555544 223344667777766665444333 233 333332 226667777778
Q ss_pred cCccchhhcchhhhhhhHHHHHhhcc
Q 003738 554 IPACTVVVDISNSAKDLIDNEVSAFY 579 (799)
Q Consensus 554 iP~~~~V~~~s~~~~d~ie~E~~~F~ 579 (799)
-|....+....+.+.+.-.+++....
T Consensus 149 ~~~~~~~~~~l~~l~~~~~~~a~~~~ 174 (181)
T PF12729_consen 149 RPAFDELRDALDELIEYNNQQAEQAY 174 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988888877654
No 35
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.66 E-value=4.4e+02 Score=24.69 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 003738 142 HIVRRQRKDLRARMLEISREEAERKRMLDERANYR 176 (799)
Q Consensus 142 ~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~sd~r 176 (799)
.|.-+++.++|. +..--+..||+.+++++++.+
T Consensus 51 ~EN~rL~ee~rr--l~~f~~~gerE~l~~eis~L~ 83 (86)
T PF12711_consen 51 MENIRLREELRR--LQSFYVEGEREMLLQEISELR 83 (86)
T ss_pred HHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHH
Confidence 444455555544 444447788888998888765
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.45 E-value=9.2e+02 Score=29.39 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003738 472 AAGLRASLNTVMSEIQRL 489 (799)
Q Consensus 472 ~agl~Asl~~L~se~q~L 489 (799)
+.-..|.+..++.+|+.|
T Consensus 344 L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 344 LNDKDAEIAKMREECQQL 361 (546)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 344556666677777654
No 37
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=20.37 E-value=8.9e+02 Score=24.37 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccccHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHH
Q 003738 675 SVLEDLAKAINLVHIRQDLVESGHTLLNHAYRAQQEYERTTNYCLNLADEQEKLVMEKWLPELKTAVLNAQKSLEDCKYV 754 (799)
Q Consensus 675 ~ll~~la~~~~~v~~lrDl~~~~~~~L~~a~~~~~~~~~t~~~ll~~~~eqek~~~e~~lP~Lk~l~~~a~q~Le~c~~V 754 (799)
.+-.++..+...+...++-+......|.++.. ...-.++...++...+-.+..+....++-+++.+.=
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~------------~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~E 90 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLA------------LAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRE 90 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555566666666666666655533 223346677888888999999999999999999998
Q ss_pred hhHHHHhhhcccccc
Q 003738 755 RGLLDEWWEQPASTV 769 (799)
Q Consensus 755 ~glv~eWWEQPaq~~ 769 (799)
-..+-.|+.+|--.+
T Consensus 91 Ne~lR~Wa~t~LPd~ 105 (135)
T TIGR03495 91 NEDLRRWADTPLPDD 105 (135)
T ss_pred CHHHHHHhcCCCcHH
Confidence 899999999885443
No 38
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=20.05 E-value=1.1e+03 Score=26.68 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhhccCCchhhHhh
Q 003738 177 HKQVVLEAYDEQSDE--------AAKIFAEYHKRLRQYVNQARDAQRTSVDSSVEVAS 226 (799)
Q Consensus 177 hrqlLL~Ay~qqc~~--------~~~~l~e~~krLq~~v~qar~~qr~~~~~~~~~l~ 226 (799)
.+--.++.|-.+.+. ..+.|.+|.....+...++.++-.+.+++....+.
T Consensus 130 ~~l~~~~~~y~~~d~~q~dw~~G~~~a~~~y~d~a~n~a~~~~~~~~~af~gm~dal~ 187 (332)
T TIGR01541 130 EALAELHAYYAAEDALQGDWLAGARSGLADYGETATNVASAAAQLATNAFGGMASNIA 187 (332)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666666555 34555555555555555555555555554333433
No 39
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.02 E-value=9.6e+02 Score=24.63 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHH-----HHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 003738 124 EAALNEREMAAKEVERLRHIVRRQRKD----------LRARMLEISRE-----EAERKRMLDERANYRHKQVVLEAYDEQ 188 (799)
Q Consensus 124 e~~~~ere~l~~eVerLR~eI~~~~k~----------~k~~~ld~s~E-----~~Erq~~~~e~sd~rhrqlLL~Ay~qq 188 (799)
|.+.++.+.+.+|++.++.+|...-++ .|.|+.++|+. +.+-+.+-++-.+.+-+=.+++.--.+
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666555443222 26777777775 334444555555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003738 189 SDEAAKIFAEYHKRLRQYVNQ 209 (799)
Q Consensus 189 c~~~~~~l~e~~krLq~~v~q 209 (799)
++.-..-|.-..+++..-++.
T Consensus 103 Lr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555553
Done!