Query 003738
Match_columns 799
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 02:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2og0_A Excisionase; protein-DN 45.8 11 0.00039 30.4 2.5 26 15-55 5-30 (52)
2 1pm6_A Excisionase; antiparall 34.4 21 0.00073 30.6 2.5 26 15-55 5-30 (72)
3 3nmd_A CGMP dependent protein 34.1 98 0.0034 26.9 6.5 39 486-527 21-59 (72)
4 2oxj_A Hybrid alpha/beta pepti 33.1 54 0.0019 24.9 4.1 25 120-144 7-31 (34)
5 3lay_A Zinc resistance-associa 27.7 1.6E+02 0.0056 28.9 7.8 59 120-178 70-128 (175)
6 2yy0_A C-MYC-binding protein; 23.1 1.3E+02 0.0043 24.4 5.1 28 122-149 20-47 (53)
7 1yhn_B RILP, RAB interacting l 22.5 2.3E+02 0.008 24.1 6.6 56 139-197 4-59 (65)
8 1deb_A APC protein, adenomatou 22.3 2.2E+02 0.0077 23.4 6.2 33 130-162 5-37 (54)
9 1quu_A Human skeletal muscle a 21.1 5.7E+02 0.02 24.8 12.6 48 475-522 92-143 (250)
10 3c3f_A Alpha/beta peptide with 21.1 1.2E+02 0.0042 23.0 4.1 25 120-144 7-31 (34)
11 3twe_A Alpha4H; unknown functi 20.8 1E+02 0.0034 22.0 3.4 21 133-153 6-26 (27)
No 1
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=45.75 E-value=11 Score=30.40 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCCCCCCCCcccccCCCCChHHHHhhhhcCCc
Q 003738 15 ILEWLQKEMGYRPLGSYSSTSMKANAPNADTIRKICRGNMI 55 (799)
Q Consensus 15 l~rWa~eEMg~~p~g~y~~~~~~~~~Ps~~~lrrlCrGnm~ 55 (799)
|.+||..+++ + |+.+++++.++..++
T Consensus 5 l~EwA~~~~~-~--------------~s~~Tl~r~ar~G~I 30 (52)
T 2og0_A 5 LQEWNARQRR-P--------------RSLETVRRWVRESRI 30 (52)
T ss_dssp HHHHHHTSSS-C--------------CCHHHHHHHHHTTCE
T ss_pred HHHHHHHhcC-C--------------CCHHHHHHHHHCCCC
Confidence 6799998888 7 999999999998776
No 2
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=34.38 E-value=21 Score=30.63 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCCCCCCCCcccccCCCCChHHHHhhhhcCCc
Q 003738 15 ILEWLQKEMGYRPLGSYSSTSMKANAPNADTIRKICRGNMI 55 (799)
Q Consensus 15 l~rWa~eEMg~~p~g~y~~~~~~~~~Ps~~~lrrlCrGnm~ 55 (799)
|.+||..+++ + |+.++++++++..++
T Consensus 5 l~EwA~~~~~-~--------------~s~~Tl~r~ar~G~I 30 (72)
T 1pm6_A 5 LQEWNARQRR-P--------------RSLETVRRWVRESRI 30 (72)
T ss_dssp HHHHHHHSSS-C--------------CCHHHHHHHHHHTCE
T ss_pred HHHHHHHhcC-C--------------CCHHHHHHHHHCCCC
Confidence 6899999998 8 999999999998777
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.11 E-value=98 Score=26.90 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003738 486 IQRLNKLCAERKEAEDSLKKKWKKIEEFDSRRSELETIYTAL 527 (799)
Q Consensus 486 ~q~L~k~~~eRkea~~sLq~KwqrIeeF~~l~~e~q~~i~aL 527 (799)
+++|+.+...+- +.|+.|-.+|.+.+.+..++++.|+-|
T Consensus 21 i~eLq~~L~~K~---eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 21 LRDLQYALQEKI---EELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777765554 457788888999999999999998866
No 4
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.08 E-value=54 Score=24.88 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 120 SESREAALNEREMAAKEVERLRHIV 144 (799)
Q Consensus 120 ~~~Re~~~~ere~l~~eVerLR~eI 144 (799)
++.-|.++++.+.|+.||+|||+-+
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556788888888999999998764
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.74 E-value=1.6e+02 Score=28.91 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhH
Q 003738 120 SESREAALNEREMAAKEVERLRHIVRRQRKDLRARMLEISREEAERKRMLDERANYRHK 178 (799)
Q Consensus 120 ~~~Re~~~~ere~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~sd~rhr 178 (799)
++.++....=++...+++..||.++...+.++++.+....-.++.=+...+|+++.|-+
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~q 128 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444444455557778888888888888888887765555555555566777666543
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.13 E-value=1.3e+02 Score=24.43 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 122 SREAALNEREMAAKEVERLRHIVRRQRK 149 (799)
Q Consensus 122 ~Re~~~~ere~l~~eVerLR~eI~~~~k 149 (799)
.=|++.++.+.|.++|+.|..++..+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777788888888877776443
No 7
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=22.54 E-value=2.3e+02 Score=24.12 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003738 139 RLRHIVRRQRKDLRARMLEISREEAERKRMLDERANYRHKQVVLEAYDEQSDEAAKIFA 197 (799)
Q Consensus 139 rLR~eI~~~~k~~k~~~ld~s~E~~Erq~~~~e~sd~rhrqlLL~Ay~qqc~~~~~~l~ 197 (799)
.||.++++ |.+||+++.+++=|.+=++.. ..++-+.--+||.|-.-.+..+.+...
T Consensus 4 Elr~iLqE-RNELKa~vf~lqeEL~yY~~e--~l~~~~~p~~ll~a~k~aikkqr~~ik 59 (65)
T 1yhn_B 4 EFEQILQE-RNELKAKVFLLKEELAYFQRE--LLTDHRVPSLLLEAMKVAVRKQRKKIK 59 (65)
T ss_dssp THHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HSSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhc--cCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 56777776 889999999988887766653 234667778999998888877776544
No 8
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.34 E-value=2.2e+02 Score=23.39 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003738 130 REMAAKEVERLRHIVRRQRKDLRARMLEISREE 162 (799)
Q Consensus 130 re~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~ 162 (799)
-|+|-+.|+-||.|..++|+||+.---..+.-|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 367888999999999999999976433344333
No 9
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=21.11 E-value=5.7e+02 Score=24.77 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHH
Q 003738 475 LRASLNTVMSEIQRLNKLCAERKEAEDSLKKKWKKIE----EFDSRRSELET 522 (799)
Q Consensus 475 l~Asl~~L~se~q~L~k~~~eRkea~~sLq~KwqrIe----eF~~l~~e~q~ 522 (799)
...-.+.|......|.+++..|+..+..-....+.|+ .|-..+.+...
T Consensus 92 I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~ 143 (250)
T 1quu_A 92 VNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNN 143 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455788999999999999999999999888888887 66666665543
No 10
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.07 E-value=1.2e+02 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003738 120 SESREAALNEREMAAKEVERLRHIV 144 (799)
Q Consensus 120 ~~~Re~~~~ere~l~~eVerLR~eI 144 (799)
++.-|.++++...|+.||+|||.-+
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455777777777888888888754
No 11
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.81 E-value=1e+02 Score=21.97 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003738 133 AAKEVERLRHIVRRQRKDLRA 153 (799)
Q Consensus 133 l~~eVerLR~eI~~~~k~~k~ 153 (799)
|-+|++.|...++.+||.+++
T Consensus 6 lykeledlqerlrklrkklrs 26 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 778888888888888888875
Done!