Query 003738
Match_columns 799
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 02:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003738.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003738hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh6a_ a.6.1.7 (A:) Excisiona 68.4 1.3 9.7E-05 34.7 2.6 26 15-55 5-30 (55)
2 d1r8ea1 a.6.1.3 (A:3-120) Tran 14.0 2.1E+02 0.015 23.1 7.0 20 747-766 99-118 (118)
3 d1yuja_ g.37.1.1 (A:) GAGA fac 13.8 31 0.0022 26.2 1.3 26 552-579 25-50 (54)
4 d1sv0a_ a.60.1.1 (A:) Ets DNA- 12.9 59 0.0043 25.9 2.9 54 12-65 17-72 (77)
5 d1s35a2 a.7.1.1 (A:1169-1273) 12.7 2.8E+02 0.021 21.1 8.8 73 687-759 3-78 (105)
6 d1r5la1 a.5.3.1 (A:25-90) Alph 10.6 1.1E+02 0.0077 23.5 3.7 51 12-82 4-54 (66)
7 d2azeb1 e.63.1.2 (B:201-301) T 9.8 2.2E+02 0.016 23.6 5.7 26 131-165 4-29 (101)
8 d2b5aa1 a.35.1.3 (A:1-77) Regu 9.6 36 0.0027 26.0 0.5 24 39-62 48-71 (77)
9 d2gtvx1 a.130.1.3 (X:1-93) Cho 9.5 2.9E+02 0.021 21.8 6.3 31 135-174 3-43 (93)
10 d1ji7a_ a.60.1.1 (A:) Etv6 tra 9.0 1.1E+02 0.0082 24.2 3.3 50 12-61 20-71 (77)
No 1
>d1rh6a_ a.6.1.7 (A:) Excisionase Xis {Bacteriophage lambda [TaxId: 10710]}
Probab=68.39 E-value=1.3 Score=34.71 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCCCCCCcccccCCCCChHHHHhhhhcCCc
Q 003738 15 ILEWLQKEMGYRPLGSYSSTSMKANAPNADTIRKICRGNMI 55 (799)
Q Consensus 15 l~rWa~eEMg~~p~g~y~~~~~~~~~Ps~~~lrrlCrGnm~ 55 (799)
|.+|+.++ |+ .|+..+|++.|+++||
T Consensus 5 L~eWa~~~--~~-------------pPs~~TL~~~ak~g~I 30 (55)
T d1rh6a_ 5 LQEWNARQ--RR-------------PRSLETVRRWVRESRI 30 (55)
T ss_dssp HHHHHHTS--SS-------------CCCHHHHHHHHHTTCE
T ss_pred HHHHhhcc--cC-------------CCCHHHHHHHHHcCcc
Confidence 78999998 43 3999999999999876
No 2
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=14.04 E-value=2.1e+02 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=12.5
Q ss_pred hhhhHHHHhhHHHHhhhccc
Q 003738 747 SLEDCKYVRGLLDEWWEQPA 766 (799)
Q Consensus 747 ~Le~c~~V~glv~eWWEQPa 766 (799)
-.+....++..+..|=|-||
T Consensus 99 ~~~~l~~~~~~l~~~~e~pa 118 (118)
T d1r8ea1 99 LEQTISLVKKRMKRQMEYPA 118 (118)
T ss_dssp HHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 34444556666777777776
No 3
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}
Probab=13.80 E-value=31 Score=26.16 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.7
Q ss_pred cccCccchhhcchhhhhhhHHHHHhhcc
Q 003738 552 TIIPACTVVVDISNSAKDLIDNEVSAFY 579 (799)
Q Consensus 552 ~iiP~~~~V~~~s~~~~d~ie~E~~~F~ 579 (799)
.--|.|-+|+-+|.+++.-+ |+.||-
T Consensus 25 atcpic~avirqsrnlrrhl--el~hf~ 50 (54)
T d1yuja_ 25 ATCPICYAVIRQSRNLRRHL--ELRHFA 50 (54)
T ss_dssp EECTTTCCEESSHHHHHHHH--HHHTSC
T ss_pred CCCchHHHHHHHHHHHHHHH--HHHhhc
Confidence 45699999999999999887 577774
No 4
>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.93 E-value=59 Score=25.92 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCCCC--CCCCcccccCCCCChHHHHhhhhcCCchhhHHHHhhh
Q 003738 12 PEAILEWLQKEMGYRPL--GSYSSTSMKANAPNADTIRKICRGNMIPIWGFLLKRV 65 (799)
Q Consensus 12 aeel~rWa~eEMg~~p~--g~y~~~~~~~~~Ps~~~lrrlCrGnm~~IW~fli~hV 65 (799)
...=..|+..|+++++. ..+.-.+..--.-+.+.|++.|-+.|--+|++|-.-.
T Consensus 17 V~~Wl~w~~~ef~L~~i~~~~F~m~G~~LC~ls~~dF~~r~p~~GdiL~~hL~~L~ 72 (77)
T d1sv0a_ 17 VLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPGAGDVLHNVLQMLI 72 (77)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCccccCCCHHHHHcCCHHHHHhHCCCcHHHHHHHHHHHH
Confidence 44556778899999853 2232222233345778888888776655677664433
No 5
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.65 E-value=2.8e+02 Score=21.13 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHh-cccccccHHHHHHHhHHHHHH--HHHHhhHHHHHHHHHHHHhhhhHHHHhhHHH
Q 003738 687 VHIRQDLVESGHTLLNHAYRA-QQEYERTTNYCLNLADEQEKL--VMEKWLPELKTAVLNAQKSLEDCKYVRGLLD 759 (799)
Q Consensus 687 v~~lrDl~~~~~~~L~~a~~~-~~~~~~t~~~ll~~~~eqek~--~~e~~lP~Lk~l~~~a~q~Le~c~~V~glv~ 759 (799)
-+|++|.-..-.|+-.+...- ..+++.+...+-...+.++.- .+...-|+++.+.+.+.+-+..++.=..-|.
T Consensus 3 q~F~~d~~~~~~Wi~~~e~~l~~~~~g~dl~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~ 78 (105)
T d1s35a2 3 QEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIK 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHH
Confidence 467888888877766553333 567888988888888877653 3455668899999998888877764444343
No 6
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.61 E-value=1.1e+02 Score=23.50 Aligned_cols=51 Identities=6% Similarity=-0.013 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCCCCCCCcccccCCCCChHHHHhhhhcCCchhhHHHHhhhchhhhHHhHhhceeeec
Q 003738 12 PEAILEWLQKEMGYRPLGSYSSTSMKANAPNADTIRKICRGNMIPIWGFLLKRVKSEKTVESIRKNIMVHG 82 (799)
Q Consensus 12 aeel~rWa~eEMg~~p~g~y~~~~~~~~~Ps~~~lrrlCrGnm~~IW~fli~hV~SqrtV~~IRgNl~~~g 82 (799)
-.+|++|+.++ |.|-+ ....++..|-|.+|+.=.+ -++|.+.|++.+.|..
T Consensus 4 L~elR~~l~~~-~~p~l---------p~~~dD~~LlrFLRarkf~----------~~ka~~~l~~y~~~R~ 54 (66)
T d1r5la1 4 LAALRRRAREA-GVPLA---------PLPLTDSFLLRFLRARDFD----------LDLAWRLLKNYYKWRA 54 (66)
T ss_dssp HHHHHHHHHHH-TCCCS---------SSCCCHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCcC---------CCCCCHHHHHHHHHHccCC----------HHHHHHHHHHHHHHHH
Confidence 57999999998 44411 0113677777776664333 3667777777776654
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.84 E-value=2.2e+02 Score=23.60 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003738 131 EMAAKEVERLRHIVRRQRKDLRARMLEISREEAER 165 (799)
Q Consensus 131 e~l~~eVerLR~eI~~~~k~~k~~~ld~s~E~~Er 165 (799)
+.|.+|++.|..+-++ ||..|..+..
T Consensus 4 ~~L~~El~~L~~~E~~---------LD~li~~~~~ 29 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQ---------LDHLMNICTT 29 (101)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 3477778888777777 7766665543
No 8
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=9.62 E-value=36 Score=25.96 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.3
Q ss_pred CCCChHHHHhhhhcCCchhhHHHH
Q 003738 39 NAPNADTIRKICRGNMIPIWGFLL 62 (799)
Q Consensus 39 ~~Ps~~~lrrlCrGnm~~IW~fli 62 (799)
..|+.+.|.+||..=+++++-|+-
T Consensus 48 ~~p~~~~l~~ia~~l~v~~~~l~~ 71 (77)
T d2b5aa1 48 RNISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp SCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHhc
Confidence 469999999999999999988764
No 9
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}
Probab=9.49 E-value=2.9e+02 Score=21.84 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHhhh
Q 003738 135 KEVERLRHIVRRQRKDLRARMLEISRE----------EAERKRMLDERAN 174 (799)
Q Consensus 135 ~eVerLR~eI~~~~k~~k~~~ld~s~E----------~~Erq~~~~e~sd 174 (799)
++++.+|.+|.+ +|.++= ..+|-..+.++..
T Consensus 3 ~~L~~lR~~Id~---------iD~~ii~~~~~~~~~Ll~~R~~l~~~I~~ 43 (93)
T d2gtvx1 3 EKLAEIRKKIDE---------IDNKILKARWPWAEKLIAERNSLAKDVAE 43 (93)
T ss_dssp THHHHHHHHHHH---------HHHHHHTSSSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 478899999999 887775 6788888888883
No 10
>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.01 E-value=1.1e+02 Score=24.18 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCCC--CCCCcccccCCCCChHHHHhhhhcCCchhhHHH
Q 003738 12 PEAILEWLQKEMGYRPL--GSYSSTSMKANAPNADTIRKICRGNMIPIWGFL 61 (799)
Q Consensus 12 aeel~rWa~eEMg~~p~--g~y~~~~~~~~~Ps~~~lrrlCrGnm~~IW~fl 61 (799)
...=..|+..|+++++. ..+.-.+..--.=+.+.|+..|-++|--.|.+|
T Consensus 20 V~~WL~w~~~ef~L~~i~~~~F~m~G~~LC~lt~~dF~~r~p~~GdiL~~hL 71 (77)
T d1ji7a_ 20 VAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDELYELL 71 (77)
T ss_dssp HHHHHHHHHHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCChhccCCCHHHHHcCCHHHHHhHCCCcHHHHHHHH
Confidence 33445678899999853 233222223344567777888865554455554
Done!