BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003743
(799 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 268 bits (685), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 257/477 (53%), Gaps = 32/477 (6%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+A EA +AP+I+ D L V L + +MD G K+
Sbjct: 288 KAFE----EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL----LTLMD--GLKQ 337
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
++ + +A+ I +L GRFD V + P A+ R IL+ I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ--IHTKNMKL 390
Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 479
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 480 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 539
DF A+ + P A+R+ T E + W+D+GGL D++ ++E+++ P + P+ F +
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 507
Query: 540 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAT 599
+ VL YGPPGCGKT + A A C FIS+KGPELL + G SE VR+IF KA
Sbjct: 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Query: 600 AAAPCLLFFDEFDSIAPKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 656
AAPC+LFFDE DSIA R D G DRV+NQ LTE+DG+ VF+ AT+RPD
Sbjct: 568 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 657 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
++D A+LRPGRLD+L++ P + R+ ILK RK P+A DVDLE +A MT GFSG
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 124/207 (59%)
Query: 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 566
G+DDVGG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 567 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 626
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+V+Q LT +DG++ V V AAT+RP+ +D AL R GR DR + P RL+IL
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381
Query: 687 KVISRKLPLADDVDLEAIAHMTEGFSG 713
++ ++ + LADDVDLE +A+ T G G
Sbjct: 382 QIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 257/477 (53%), Gaps = 32/477 (6%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+A EA +AP+I+ D L V L + +MD G K+
Sbjct: 288 KAFE----EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL----LTLMD--GLKQ 337
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
++ + +A+ I +L GRFD V + P A+ R IL+ I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ--IHTKNMKL 390
Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 479
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 480 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 539
DF A+ + P A+R+ T E + W+D+GGL D++ ++E+++ P + P+ F +
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 507
Query: 540 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAT 599
+ VL YGPPGCGKT + A A C FIS+KGPELL + G SE VR+IF KA
Sbjct: 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Query: 600 AAAPCLLFFDEFDSIAPKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 656
AAPC+LFFDE DSIA R D G DRV+NQ LTE+DG+ VF+ AT+RPD
Sbjct: 568 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 657 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
++D A+LRPGRLD+L++ P + R+ ILK RK P+A DVDLE +A MT GFSG
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 124/207 (59%)
Query: 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 566
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 567 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 626
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+V+Q LT +DG++ V V AAT+RP+ +D AL R GR DR + P RL+IL
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381
Query: 687 KVISRKLPLADDVDLEAIAHMTEGFSG 713
++ ++ + LADDVDLE +A+ T G G
Sbjct: 382 QIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 144/221 (65%), Gaps = 3/221 (1%)
Query: 496 ITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCG 555
+ +T E + W+D+GGL D++ ++E+++ P + P+ F + + VL YGPPGCG
Sbjct: 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 61
Query: 556 KTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIA 615
KT + A A C FIS+KGPELL + G SE VR+IF KA AAPC+LFFDE DSIA
Sbjct: 62 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 121
Query: 616 PKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLL 672
R D G DRV+NQ LTE+DG+ VF+ AT+RPD++D A+LRPGRLD+L+
Sbjct: 122 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 673 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
+ P + R+ ILK RK P+A DVDLE +A MT GFSG
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 81/225 (36%), Gaps = 34/225 (15%)
Query: 241 PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 300
PD L F P G +L +GPPG GKT LAKA+A C +
Sbjct: 38 PDKFLKFGMT--PSKG-VLFYGPPGCGKTLLAKAIANE--------------CQANFISI 80
Query: 301 KGPII--------RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALT 352
KGP + + +A AP ++ FD L +
Sbjct: 81 KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 140
Query: 353 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 412
+ L + MD K+ + + + + I ++ GR D + +P P R
Sbjct: 141 QILTE-MDGMSTKKN-------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 192
Query: 413 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457
AIL+ + R+S D L +A +G+ DL + R A
Sbjct: 193 AILKANL-RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 135/201 (67%), Gaps = 3/201 (1%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
W D+G L DI+ + I P + P+ F L + VLL GPPGCGKT + A A
Sbjct: 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 627
L FISVKGPELLN Y+G SE+AVR +F +A +APC++FFDE D++ P+R TG +
Sbjct: 69 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASV 128
Query: 628 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILK 687
RVVNQ LTE+DG+E VF+ AAT+RPD++D A+LRPGRLD+ LF P P +RL ILK
Sbjct: 129 RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188
Query: 688 VISR---KLPLADDVDLEAIA 705
I++ K PL DV+LEAIA
Sbjct: 189 TITKNGTKPPLDADVNLEAIA 209
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 240 SPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 299
+PD F L P +L+ GPPG GKT LAKAVA + + F+
Sbjct: 32 NPDQ---FKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--------SGLNFISV----- 75
Query: 300 EKGPII--------RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIAL 351
KGP + +A+ A + AP ++ FD + + +
Sbjct: 76 -KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS----VRV 130
Query: 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD--FHVQLPAPAAS 409
L+ MD +++ + +A+ + I ++ GR D V LP PA
Sbjct: 131 VNQLLTEMDGLEARQQ-------VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA-- 181
Query: 410 ERKAILEHEIQRRSLECSD-EILLDVAS---KCDGYDAYDLEILV 450
+R AIL+ + + D ++ L+ + +CD Y DL LV
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 127/209 (60%), Gaps = 3/209 (1%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
++D+GGL I+E++ELP K P +F + + +LLYGPPG GKT + A A
Sbjct: 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--- 624
+ FI V G EL+ K+IG V+DIF A AP ++F DE D+IA KR TG
Sbjct: 76 NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDR 135
Query: 625 VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 684
R + Q L E+DG + V + AT+RPD+LD A+LRPGR DR++ P + RL+
Sbjct: 136 EVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLE 195
Query: 685 ILKVISRKLPLADDVDLEAIAHMTEGFSG 713
ILK+ +RK+ LA+DV+LE IA MTEG G
Sbjct: 196 ILKIHTRKMNLAEDVNLEEIAKMTEGCVG 224
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 101/245 (41%), Gaps = 28/245 (11%)
Query: 246 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
F + P IL++GPPG+GKT LAKAVA E + + + + E ++
Sbjct: 42 LFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNATFIRVVGSELVKKFIGEGASLV 99
Query: 306 RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEK 365
+ + A + APSI+ D + L + L + MD + +
Sbjct: 100 K----DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE-MDGFDAR 154
Query: 366 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE 425
G + + + + + ++ GRFD +++PAP R IL +I R +
Sbjct: 155 -------GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEIL--KIHTRKMN 205
Query: 426 CSDEI-LLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQA 484
++++ L ++A +G +L+ + A+ + ++ + DDF +A
Sbjct: 206 LAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAI-----------RELRDYVTMDDFRKA 254
Query: 485 MHEFL 489
+ + +
Sbjct: 255 VEKIM 259
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 124/207 (59%)
Query: 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 566
G+DDVGG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 567 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 626
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+V+Q LT +DG++ V V AAT+RP+ +D AL R GR DR + P RL+IL
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381
Query: 687 KVISRKLPLADDVDLEAIAHMTEGFSG 713
++ ++ + LADDVDLE +A+ T G G
Sbjct: 382 QIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 26/248 (10%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+A EA +AP+I+ D L V L+ +MD G K+
Sbjct: 288 KAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLKQ 337
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMKL 390
Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 479
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 480 DFSQAMHE 487
DF A+ +
Sbjct: 451 DFRWALSQ 458
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 124/207 (59%)
Query: 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 566
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 567 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 626
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+V+Q LT +DG++ V V AAT+RP+ +D AL R GR DR + P RL+IL
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381
Query: 687 KVISRKLPLADDVDLEAIAHMTEGFSG 713
++ ++ + LADDVDLE +A+ T G G
Sbjct: 382 QIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+A EA +AP+I+ D L V L+ +MD G K+
Sbjct: 288 KAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLKQ 337
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMKL 390
Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 479
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 480 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGG 513
DF A+ + P A+R+ T E + W+D+GG
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 124/207 (59%)
Query: 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 566
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 567 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 626
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+V+Q LT +DG++ V V AAT+RP+ +D AL R GR DR + P RL+IL
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381
Query: 687 KVISRKLPLADDVDLEAIAHMTEGFSG 713
++ ++ + LADDVDLE +A+ T G G
Sbjct: 382 QIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+A EA +AP+I+ D L V L+ +MD G K+
Sbjct: 288 KAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLKQ 337
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMKL 390
Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 479
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 480 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGG 513
DF A+ + P A+R+ T E + W+D+GG
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGG 481
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 124/207 (59%)
Query: 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 566
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 567 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 626
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+V+Q LT +DG++ V V AAT+RP+ +D AL R GR DR + P RL+IL
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381
Query: 687 KVISRKLPLADDVDLEAIAHMTEGFSG 713
++ ++ + LADDVDLE +A+ T G G
Sbjct: 382 QIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+A EA +AP+I+ D L V L+ +MD G K+
Sbjct: 288 KAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLKQ 337
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMKL 390
Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 479
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 480 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGG 513
DF A+ + P A+R+ T E + W+D+GG
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGG 481
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 3/218 (1%)
Query: 499 TSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 558
TS E G +D +GGLT+ ++E+IELP K P IF + ++ VLLYGPPG GKT
Sbjct: 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTL 230
Query: 559 IVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 618
+ A AA FI +++KYIG S + +R++F+ A PC++F DE D+I +R
Sbjct: 231 LAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRR 290
Query: 619 GHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCD 675
+ T R + + LT++DG + L + AT+RPD LD ALLRPGRLDR +
Sbjct: 291 FSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
Query: 676 FPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
P+ RL+I K+ + K+ + D EA M++GF+G
Sbjct: 351 LPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNG 388
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 36/250 (14%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLEKG 302
F + P +L++GPPG+GKT LAKAVA ++ A+ +F S + E
Sbjct: 207 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGESA 260
Query: 303 PIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEY 362
IIR+ + A +H P I+ D + L + L MD +
Sbjct: 261 RIIREMFAY----AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ-MDGF 315
Query: 363 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR 422
+G + + + + +L GR D V++P P + R I +I
Sbjct: 316 D-------NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIF--KIHTA 366
Query: 423 SLECSDEILLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDF 481
++ + E + A K DG++ D+ R G + D HI P DD
Sbjct: 367 KVKKTGEFDFEAAVKMSDGFNGADI-----RNCATEAGFFAIRDDR--DHINP----DDL 415
Query: 482 SQAMHEFLPV 491
+A+ + V
Sbjct: 416 MKAVRKVAEV 425
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 143/271 (52%), Gaps = 18/271 (6%)
Query: 505 RSGWDDVGGLTDIQNAIKEMIEL---PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 561
R + DVGG + +KE++E PSKF I A+ P +LL GPPG GKT +
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMP----KGILLVGPPGTGKTLLAR 67
Query: 562 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 621
A A ++ F + G + + ++G VRD+F++A A APC++F DE D++ RG
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127
Query: 622 NTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPS 678
G D + +NQ L E+DG + G+ V AAT+RPD+LD ALLRPGR D+ + D P
Sbjct: 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
Query: 679 PRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNIDSN 738
R IL++ +R PLA+DV+LE IA T GF G E + I
Sbjct: 188 MLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI--- 244
Query: 739 EPGKMPVITDALLKSIASKARPS--VSEAEK 767
M +A+ + IA AR S +S AEK
Sbjct: 245 ---TMKDFEEAIDRVIAGPARKSLLISPAEK 272
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLE 300
F+ +P IL+ GPPG+GKT LA+AVA D V V V +R
Sbjct: 41 FNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR---- 96
Query: 301 KGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMD 360
+ + ++A HAP IV D + L + LV+ MD
Sbjct: 97 --------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE-MD 147
Query: 361 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 420
+ K I +A+ + + +L GRFD + + P RK IL EI
Sbjct: 148 GFDSKEG-------IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL--EIH 198
Query: 421 RRSLECSDEILLD-VASKCDGYDAYDLEILVDRT--VHAAVGRYLHSDSSFEKHI 472
R+ ++++ L+ +A + G+ DLE LV+ + A GR + FE+ I
Sbjct: 199 TRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 142/271 (52%), Gaps = 18/271 (6%)
Query: 505 RSGWDDVGGLTDIQNAIKEMIEL---PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 561
R + DVGG + +KE++E PSKF I A+ P +LL GPPG G T +
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMP----KGILLVGPPGTGATLLAR 67
Query: 562 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 621
A A ++ F + G + + ++G VRD+F++A A APC++F DE D++ RG
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127
Query: 622 NTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPS 678
G D + +NQ L E+DG + G+ V AAT+RPD+LD ALLRPGR D+ + D P
Sbjct: 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
Query: 679 PRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNIDSN 738
R IL++ +R PLA+DV+LE IA T GF G E + I
Sbjct: 188 MLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI--- 244
Query: 739 EPGKMPVITDALLKSIASKARPS--VSEAEK 767
M +A+ + IA AR S +S AEK
Sbjct: 245 ---TMKDFEEAIDRVIAGPARKSLLISPAEK 272
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 31/235 (13%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLE 300
F+ +P IL+ GPPG+G T LA+AVA D V V V +R
Sbjct: 41 FNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAAR---- 96
Query: 301 KGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMD 360
+ + ++A HAP IV D + L + LV+ MD
Sbjct: 97 --------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE-MD 147
Query: 361 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 420
+ K I +A+ + + +L GRFD + + P RK IL EI
Sbjct: 148 GFDSKEG-------IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL--EIH 198
Query: 421 RRSLECSDEILLD-VASKCDGYDAYDLEILVDRT--VHAAVGRYLHSDSSFEKHI 472
R+ ++++ L+ +A + G+ DLE LV+ + A GR + FE+ I
Sbjct: 199 TRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 521 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 55 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110
Query: 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 637
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
Query: 638 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD 697
DG E T + V AAT+RPD+LD ALLRPGR DR + D P + R IL++ +R PLA+
Sbjct: 171 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE 230
Query: 698 DVDLEAIAHMTEGFSG 713
DVDL +A T GF G
Sbjct: 231 DVDLALLAKRTPGFVG 246
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 254 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 307
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 72 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 120
Query: 308 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 367
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 121 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 177
Query: 368 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 427
+ I +A+ + + +L GRFD + + AP R+ IL + + L
Sbjct: 178 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AE 230
Query: 428 DEILLDVASKCDGYDAYD 445
D L +A + G+ D
Sbjct: 231 DVDLALLAKRTPGFVGAD 248
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 162 bits (410), Expect = 7e-40, Method: Composition-based stats.
Identities = 86/215 (40%), Positives = 123/215 (57%), Gaps = 10/215 (4%)
Query: 505 RSGWDDVGGLTDIQNAIKEMIEL---PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 561
++ + DV G + + + E++E PS+F + + P VL+ GPPG GKT +
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP----KGVLMVGPPGTGKTLLAK 63
Query: 562 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 621
A A + F ++ G + + ++G VRD+F +A AAPC++F DE D++ +RG
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 622 NTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPS 678
G D + +NQ L E+DG E G+ V AAT+RPD+LD ALLRPGR DR + P
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183
Query: 679 PRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
R R ILKV R++PLA D+D IA T GFSG
Sbjct: 184 VRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSG 218
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 90/225 (40%), Gaps = 29/225 (12%)
Query: 254 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 307
+P +L+ GPPG+GKT LAKA+A + D V V V SR
Sbjct: 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR----------- 92
Query: 308 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 367
+ + +A AP I+ D + L + LV+ MD +
Sbjct: 93 -VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE-MDGFE---- 146
Query: 368 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 427
G I +A+ + + +L GRFD V + P R+ IL+ ++R L
Sbjct: 147 ---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD 203
Query: 428 DEILLDVASKCDGYDAYDLEILVDR-TVHAAVG-RYLHSDSSFEK 470
+ + +A G+ DL LV+ + AA G + + S FEK
Sbjct: 204 IDAAI-IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 247
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 521 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 46 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 101
Query: 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 637
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 102 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161
Query: 638 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD 697
DG E T + V AAT+RPD+LD ALLRPGR DR + D P + R IL++ +R PLA+
Sbjct: 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE 221
Query: 698 DVDLEAIAHMTEGFSG 713
DVDL +A T GF G
Sbjct: 222 DVDLALLAKRTPGFVG 237
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 254 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 307
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 111
Query: 308 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 367
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 112 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 168
Query: 368 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 427
+ I +A+ + + +L GRFD + + AP R+ IL + + L
Sbjct: 169 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AE 221
Query: 428 DEILLDVASKCDGYDAYD 445
D L +A + G+ D
Sbjct: 222 DVDLALLAKRTPGFVGAD 239
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 521 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 55 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110
Query: 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 637
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
Query: 638 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD 697
DG E T + V AAT+RPD+LD ALLRPGR DR + D P + R IL++ +R PLA+
Sbjct: 171 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE 230
Query: 698 DVDLEAIAHMTEGFSG 713
DVDL +A T GF G
Sbjct: 231 DVDLALLAKRTPGFVG 246
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 254 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 307
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 72 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 120
Query: 308 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 367
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 121 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 177
Query: 368 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 427
+ I +A+ + + +L GRFD + + AP R+ IL + + L
Sbjct: 178 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AE 230
Query: 428 DEILLDVASKCDGYDAYD 445
D L +A + G+ D
Sbjct: 231 DVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 160 bits (404), Expect = 3e-39, Method: Composition-based stats.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 521 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 31 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86
Query: 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 637
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146
Query: 638 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD 697
DG E T + V AAT+RPD+LD ALLRPGR DR + D P + R IL++ +R PLA+
Sbjct: 147 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE 206
Query: 698 DVDLEAIAHMTEGFSG 713
DVDL +A T GF G
Sbjct: 207 DVDLALLAKRTPGFVG 222
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 28/190 (14%)
Query: 254 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 307
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 48 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 96
Query: 308 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 367
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 97 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 153
Query: 368 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 427
+ I +A+ + + +L GRFD + + AP R+ IL I R +
Sbjct: 154 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL--RIHARGKPLA 205
Query: 428 DEILLDVASK 437
+++ L + +K
Sbjct: 206 EDVDLALLAK 215
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 118/211 (55%), Gaps = 3/211 (1%)
Query: 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 565
S +D VGGLT IKE+IELP K P +F + V+LYGPPG GKT + A A
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 566 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG- 624
+FI V G EL+ KYIG + VR++F A AP ++F DE DSI R + G
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG 264
Query: 625 --VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER 682
R + + L +LDG E + + AT+R D+LD ALLRPGR+DR + PS R
Sbjct: 265 DSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR 324
Query: 683 LDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
+IL++ SRK+ L ++L +A G SG
Sbjct: 325 AEILRIHSRKMNLTRGINLRKVAEKMNGCSG 355
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 33/234 (14%)
Query: 246 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
F + + P ++++GPPG+GKT LA+AVA HH D C + + ++
Sbjct: 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVA----HHTD---------CKFIRVSGAELV 219
Query: 306 RQAL---SNFISE----ALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDI 358
++ + S + E A +HAPSI+ D + + + L +
Sbjct: 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL-NQ 278
Query: 359 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 418
+D + + I + + L+ + +L GR D ++ P P+ + R IL
Sbjct: 279 LDGFETSKN-------IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEIL--R 329
Query: 419 IQRRSLECSDEI-LLDVASKCDGYDAYDLE-ILVDRTVHAAVGRYLH-SDSSFE 469
I R + + I L VA K +G D++ + + ++A R +H + FE
Sbjct: 330 IHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFE 383
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 124/212 (58%), Gaps = 8/212 (3%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
+ DVGGL + I+E +ELP +++ Q + VLLYGPPG GKT +V A A +
Sbjct: 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV-- 625
FI V G E ++KY+G + VRD+F A AP ++F DE DSIA KR TG
Sbjct: 231 KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDR 290
Query: 626 -TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 684
R++ + LT++DG + T V V AT+R D LD ALLRPGRLDR + +FPS R+R +
Sbjct: 291 EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKI--EFPSLRDRRE 348
Query: 685 ---ILKVISRKLPLADDVDLEAIAHMTEGFSG 713
I I+ K+ LA + DL+++ + SG
Sbjct: 349 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSG 380
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---LEKGPIIRQALSN 311
P +L++GPPG+GKT L KAVA S + A + V S L +GP + + +
Sbjct: 206 PRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKYLGEGP---RMVRD 256
Query: 312 FISEALDHAPSIVIFDNL 329
A ++APSI+ D +
Sbjct: 257 VFRLARENAPSIIFIDEV 274
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 115/210 (54%), Gaps = 5/210 (2%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
+ DVGGL + E I LP K + F +R L+YGPPG GKT + A AA
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 627
+ F+ + P+L+ YIG + VRD F+ A AP ++F DE D+I KR D+ D
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR-FDSEKSGD 298
Query: 628 RVVN----QFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 683
R V + L +LDG V V AAT+R D+LD ALLR GRLDR + PS R
Sbjct: 299 REVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRA 358
Query: 684 DILKVISRKLPLADDVDLEAIAHMTEGFSG 713
IL++ SRK+ DD++ + +A T+ F+G
Sbjct: 359 QILQIHSRKMTTDDDINWQELARSTDEFNG 388
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 40/248 (16%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL------E 300
F + P L++GPPG+GKT LA+A A + F+ + L E
Sbjct: 207 FKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--------TNATFLKLAAPQLVQMYIGE 258
Query: 301 KGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMD 360
++R A + A + AP+I+ D L + + L + +D
Sbjct: 259 GAKLVRDAF----ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL-NQLD 313
Query: 361 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 420
+ + + +A+ ++ + +L SGR D ++ P P+ R IL +I
Sbjct: 314 GFSSDDR-------VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQIL--QIH 364
Query: 421 RRSLECSDEI-LLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 479
R + D+I ++A D ++ L+ + TV A + + SS KH +
Sbjct: 365 SRKMTTDDDINWQELARSTDEFNGAQLKAV---TVEAGMIALRNGQSSV-KH-------E 413
Query: 480 DFSQAMHE 487
DF + + E
Sbjct: 414 DFVEGISE 421
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 120/212 (56%), Gaps = 7/212 (3%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
+ DV G+ + + ++E ++ K P F Q ++ LL GPPGCGKT + A A
Sbjct: 5 FKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT- 626
+ F+++ G E + G VR +F +A A APC+++ DE D++ KR +G +
Sbjct: 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123
Query: 627 ---DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 683
++ +NQ L E+DG+ V V A+T+R D+LD AL+RPGRLDR +F D P+ +ER
Sbjct: 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERR 183
Query: 684 DILK--VISRKLPLADDVDLEAIAHMTEGFSG 713
+I + + S KL + + +A +T GFSG
Sbjct: 184 EIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 85/228 (37%), Gaps = 24/228 (10%)
Query: 235 IKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294
+ L SP+ L +P L+ GPPG GKT LAKAVA A + F+
Sbjct: 22 VDYLKSPERFLQLGA---KVPKGALLLGPPGCGKTLLAKAVATE--------AQVPFLAM 70
Query: 295 SRLSLEK--GPIIRQALSNFISEALDHAPSIVIFDNL-XXXXXXXXXXXXXXXXXXVIAL 351
+ + G + + + EA AP IV D + L
Sbjct: 71 AGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTL 130
Query: 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 411
+ LV+ MD G + +AS + + +L GR D HV + P ER
Sbjct: 131 NQLLVE-MDGMGTTDH-------VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 412 KAILEHEIQRRSLECSDEILLD-VASKCDGYDAYDL-EILVDRTVHAA 457
+ I E ++ L S +A G+ D+ I + +HAA
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAA 230
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 3/209 (1%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
+ D+GGL IKE +ELP P ++ + ++ V+LYG PG GKT + A A
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--- 624
S F+ + G EL+ KY+G + R IF A AP ++F DE D+I KR N+G
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 625 VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 684
R + + L +LDG + V V AT++ + LD AL+RPGR+DR + + P +
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 685 ILKVISRKLPLADDVDLEAIAHMTEGFSG 713
IL + + K+ L++DV+LE + + SG
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSG 389
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 22/165 (13%)
Query: 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL---SLEKGP-IIRQALS 310
P ++++G PG+GKT LAKAVA A + + S L L GP + RQ
Sbjct: 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGDGPRLCRQ--- 266
Query: 311 NFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSC 370
A ++APSIV D + + + L + +D + ++
Sbjct: 267 -IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL-NQLDGFDDR----- 319
Query: 371 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAIL 415
G + + + +E + +L GR D + P S +K IL
Sbjct: 320 --GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKIL 362
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 6/211 (2%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
+ D+ G + + + E+++ K+P +A ++ VLL GPPG GKT + A A
Sbjct: 10 FKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR--GHDNTGV 625
+ F S+ G + ++G VRD+F A AP ++F DE D+I R G +G
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGN 128
Query: 626 TDR--VVNQFLTELDGVEVLTG-VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER 682
+R +NQ L E+DG V V AAT+RP++LD AL+RPGR DR + D P R
Sbjct: 129 DEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGR 188
Query: 683 LDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
++ILKV + + LA+DV+L+ +A +T G +G
Sbjct: 189 VEILKVHIKGVKLANDVNLQEVAKLTAGLAG 219
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 19/234 (8%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
++ +P +L+ GPPG+GKT LAKAVA AH+ F S + +
Sbjct: 36 YANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--------AHVPFFSMGGSSFIEMFVGL 87
Query: 307 QA--LSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGE 364
A + + A APSI+ D + L+ MD +G
Sbjct: 88 GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147
Query: 365 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 424
+ P+ +A+ E + +L GRFD V + P + R IL+ I+ L
Sbjct: 148 EN------APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL 201
Query: 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVR 478
+D L +VA G DL +++ A GR + ++H+K + R
Sbjct: 202 -ANDVNLQEVAKLTAGLAGADLANIINEAALLA-GRNNQKEVR-QQHLKEAVER 252
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 3/209 (1%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
+ DVGG D ++E++ELP P FA + +LLYGPPG GKT A A
Sbjct: 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--- 624
FI V G EL+ KY+G + VR++F A C++FFDE D++ R D G
Sbjct: 268 DATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDN 327
Query: 625 VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 684
R + + +T+LDG + + V AT+RP+ LD ALLRPGR+DR + P R +
Sbjct: 328 EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRAN 387
Query: 685 ILKVISRKLPLADDVDLEAIAHMTEGFSG 713
I ++ S+ + + + E I+ + +G
Sbjct: 388 IFRIHSKSMSVERGIRWELISRLCPNSTG 416
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 238 LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
LLSP+ F+T + P IL++GPPG+GKT A+AVA
Sbjct: 229 LLSPER---FATLGIDPPKGILLYGPPGTGKTLCARAVA 264
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 50 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 627
+ F SV +L++K++G SE+ V+ +F+ A P ++F D+ D++ RG + +
Sbjct: 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 168
Query: 628 RVVNQFLTELDGV-EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+ + L +++GV GV V AT+ P LD+A+ R R +R ++ P R +
Sbjct: 169 RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 226
Query: 687 KVISRKLP-LADDVDLEAIAHMTEGFSG 713
++ P + D + MTEG+SG
Sbjct: 227 EINVGDTPSVLTKEDYRTLGAMTEGYSG 254
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 28/246 (11%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 77 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVA--TEANSTFFSVSSSDLVSKWMGESEKLVK 133
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
Q + A ++ PSI+ D + T+ LV M+ G
Sbjct: 134 Q----LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQ-MNGVGNDS 185
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 424
+ +G IP L S+ RF+ + +P P + R + E +
Sbjct: 186 QGVLVLGAT----------NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS 235
Query: 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQA 484
+ E + + +GY D+ ++V + + R + S + H K DD ++
Sbjct: 236 VLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSAT----HFKDVSTEDDETRK 290
Query: 485 MHEFLP 490
+ P
Sbjct: 291 LTPSSP 296
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 26 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 84
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 627
+ F SV +L++K++G SE+ V+ +F+ A P ++F DE D++ RG + +
Sbjct: 85 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASR 144
Query: 628 RVVNQFLTELDGV-EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+ + L +++GV GV V AT+ P LD+A+ R R +R ++ P R +
Sbjct: 145 RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 202
Query: 687 KVISRKLP-LADDVDLEAIAHMTEGFSG 713
++ P + D + MTEG+SG
Sbjct: 203 EINVGDTPCVLTKEDYRTLGAMTEGYSG 230
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 24/225 (10%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 53 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVAT--EANSTFFSVSSSDLVSKWMGESEKLVK 109
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
Q + A ++ PSI+ D + T+ LV M+ G
Sbjct: 110 Q----LFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIK---TELLVQ-MNGVGNDS 161
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 424
+ +G IP L S+ RF+ + +P P + R + E +
Sbjct: 162 QGVLVLGAT----------NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC 211
Query: 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFE 469
+ E + + +GY D+ ++V + + R + S + F+
Sbjct: 212 VLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSATHFK 255
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 35 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 93
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 627
+ F SV +L++K++G SE+ V+ +F+ A P ++F D+ D++ RG + +
Sbjct: 94 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 153
Query: 628 RVVNQFLTELDGV-EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+ + L +++GV GV V AT+ P LD+A+ R R +R ++ P R +
Sbjct: 154 RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 211
Query: 687 KVISRKLP-LADDVDLEAIAHMTEGFSG 713
++ P + D + MTEG+SG
Sbjct: 212 EINVGDTPCVLTKEDYRTLGAMTEGYSG 239
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 24/225 (10%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 62 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVA--TEANSTFFSVSSSDLVSKWMGESEKLVK 118
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
Q + A ++ PSI+ D + T+ LV M+ G
Sbjct: 119 Q----LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQ-MNGVGNDS 170
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 424
+ +G IP L S+ RF+ + +P P + R + E +
Sbjct: 171 QGVLVLGAT----------NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC 220
Query: 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFE 469
+ E + + +GY D+ ++V + + R + S + F+
Sbjct: 221 VLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSATHFK 264
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 17 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75
Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 627
+ F SV +L++K++G SE+ V+ +F+ A P ++F D+ D++ RG + +
Sbjct: 76 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 135
Query: 628 RVVNQFLTELDGV-EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686
R+ + L +++GV GV V AT+ P LD+A+ R R +R ++ P R +
Sbjct: 136 RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 193
Query: 687 KVISRKLP-LADDVDLEAIAHMTEGFSG 713
++ P + D + MTEG+SG
Sbjct: 194 EINVGDTPCVLTKEDYRTLGAMTEGYSG 221
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 24/225 (10%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 44 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVAT--EANSTFFSVSSSDLVSKWMGESEKLVK 100
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
Q + A ++ PSI+ D + T+ LV M+ G
Sbjct: 101 Q----LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQ-MNGVGNDS 152
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 424
+ +G IP L S+ RF+ + +P P + R + E +
Sbjct: 153 QGVLVLGAT----------NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC 202
Query: 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFE 469
+ E + + +GY D+ ++V + + R + S + F+
Sbjct: 203 VLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSATHFK 246
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 116/211 (54%), Gaps = 10/211 (4%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 565
W DV GL + A+KE + LP KFP++F + P R +LL+GPPG GK+++ A A
Sbjct: 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR---GILLFGPPGTGKSYLAKAVAT 67
Query: 566 -ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG 624
A + F S+ +L++K++G SE+ V+++F A P ++F DE DS+ R + +
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 127
Query: 625 VTDRVVNQFLTELDGVEVLT-GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 683
R+ +FL ++ GV V G+ V AT+ P +LD+A+ R R ++ ++ P P R
Sbjct: 128 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARA 185
Query: 684 DILKV-ISRKLPLADDVDLEAIAHMTEGFSG 713
+ K+ + + D + T+G+SG
Sbjct: 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSG 216
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 89/231 (38%), Gaps = 23/231 (9%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F+ P G IL+ GPPG+GK+ LAKAVA + + + S L +
Sbjct: 38 FTGKRTPWRG-ILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKWLGESE 91
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+ + N A ++ PSI+ D + T+FLV +
Sbjct: 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQ------- 141
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 424
G+G IP L S+ RF+ + +P P R A+ + +
Sbjct: 142 ----GVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN 197
Query: 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 475
++ ++ K DGY D+ I+V + V R + S + F+K P+
Sbjct: 198 SLTEADFRELGRKTDGYSGADISIIVRDALMQPV-RKVQSATHFKKVRGPS 247
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 10/211 (4%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 565
W DV GL + A+KE + LP KFP++F + P R +LL+GPPG GK+++ A A
Sbjct: 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR---GILLFGPPGTGKSYLAKAVAT 189
Query: 566 -ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG 624
A + F S+ +L++K++G SE+ V+++F A P ++F DE DS+ R + +
Sbjct: 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249
Query: 625 VTDRVVNQFLTELDGVEVLT-GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 683
R+ +FL ++ GV V G+ V AT+ P +LD+A+ R R ++ ++ P R
Sbjct: 250 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARA 307
Query: 684 DILKV-ISRKLPLADDVDLEAIAHMTEGFSG 713
+ ++ + + D + + T+G+SG
Sbjct: 308 AMFRLHLGSTQNSLTEADFQELGRKTDGYSG 338
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 23/231 (9%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
F+ P G IL+ GPPG+GK+ LAKAVA + + + S L +
Sbjct: 160 FTGKRTPWRG-ILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKWLGESE 213
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
+ + N A ++ PSI+ D + T+FLV +
Sbjct: 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQ------- 263
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 424
G+G IP L S+ RF+ + +P P A R A+ +
Sbjct: 264 ----GVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN 319
Query: 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 475
++ ++ K DGY D+ I+V + V R + S + F+K P+
Sbjct: 320 SLTEADFQELGRKTDGYSGADISIIVRDALMQPV-RKVQSATHFKKVRGPS 369
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 21/285 (7%)
Query: 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIV 560
G + W D+ G + A++EM+ LPS P +F +AP + +LL+GPPG GKT +
Sbjct: 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAK---GLLLFGPPGNGKTLLA 71
Query: 561 GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 620
A A CS F+++ L +KY+G E+ VR +F+ A P ++F DE DS+ +R
Sbjct: 72 RAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131
Query: 621 DNTGVTDRVVNQFLTELDGVEVLTG------VFVFAATSRPDLLDAALLRPGRLDRLLFC 674
+ R+ +FL E DG L G + V AAT+RP LD A LR R + ++
Sbjct: 132 SEHEASRRLKTEFLVEFDG---LPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYV 186
Query: 675 DFPSPRERLDILKVISRKL--PLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEI- 731
P + R +L + +K PL D L +A +T+G+SG + E+
Sbjct: 187 SLPDEQTRELLLNRLLQKQGSPL-DTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245
Query: 732 LNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQ 776
+ + + M IT+ S + R SV+ + L Y + Q
Sbjct: 246 VEQVKCLDISAMRAITEQDFHSSLKRIRRSVA-PQSLNSYEKWSQ 289
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 88/236 (37%), Gaps = 24/236 (10%)
Query: 219 SSLSWMGTTASDVINRI---KVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAV 275
+ + W DV + V+L F+ P G +L+ GPPG+GKT LA+AV
Sbjct: 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKG-LLLFGPPGNGKTLLARAV 74
Query: 276 AKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXX 335
A + A + + + L+ + + + + A PSI+ D +
Sbjct: 75 A------TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128
Query: 336 XXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 395
T+FLV E+ + G + A+ + PQ L +
Sbjct: 129 RSSSEHEASRRLK---TEFLV----EFDGLPGNPDGDRIVVLAATNR-----PQELDEAA 176
Query: 396 --RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEIL 449
RF V + P R+ +L +Q++ E L +A DGY DL L
Sbjct: 177 LRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 12/212 (5%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 565
+DD+ G + A++E++ LPS P +F +AP R +LL+GPPG GKT + A AA
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPAR---GLLLFGPPGNGKTMLAKAVAA 170
Query: 566 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 625
+ F ++ L +KY+G E+ VR +F+ A P ++F D+ DS+ +R
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 626 TDRVVNQFLTELDGVEVLTG--VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 683
+ R+ +FL E DGV+ V V AT+RP LD A+LR R + ++ P+ RL
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288
Query: 684 DILKVISRKL--PLADDVDLEAIAHMTEGFSG 713
+LK + K PL +L +A MT+G+SG
Sbjct: 289 LLLKNLLCKQGSPLTQK-ELAQLARMTDGYSG 319
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
F+ P G +L+ GPPG+GKT LAKAVA
Sbjct: 141 FTGLRAPARG-LLLFGPPGNGKTMLAKAVA 169
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 12/281 (4%)
Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 565
W+D+ G+ + IKE++ P P+IF + P + +LL+GPPG GKT I A+
Sbjct: 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPK---GILLFGPPGTGKTLIGKCIAS 139
Query: 566 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 625
F S+ L +K++G E+ VR +F+ A P ++F DE DS+ +RG
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199
Query: 626 TDRVVNQFLTELDGVEVLT--GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 683
+ R+ +FL +LDG + + V AT+RP +D A R RL + L+ P R
Sbjct: 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARK 257
Query: 684 DI-LKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILN-NIDSNEPG 741
I + ++S++ + ++E I ++ FSG + + +I + P
Sbjct: 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPD 317
Query: 742 KMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKK 782
++ I ++ RPSVS + L LY + + K
Sbjct: 318 QVRPIAYIDFENAFRTVRPSVSPKD-LELYENWNKTFGCGK 357
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 238 LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
+L PD F+ P P IL+ GPPG+GKT + K +A
Sbjct: 104 MLRPDI---FTGLRGP-PKGILLFGPPGTGKTLIGKCIA 138
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 513 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLR---SNVLLYGPPGCGKTHIVGAAAAACSL 569
G D + A+ I L +++ + Q PLR N+L+ GP G GKT I A +
Sbjct: 19 GQADAKRAVA--IALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76
Query: 570 RFISVKGPELLN-KYIGAS-EQAVRDIFSKATAAAPC-----LLFFDEFDSIAPKRGHDN 622
FI V+ + Y+G + +RD+ A A ++F DE D I K +
Sbjct: 77 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG 136
Query: 623 TGVTDRVVNQFLTEL 637
V+ V + L L
Sbjct: 137 ADVSREGVQRDLLPL 151
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 257 HILIHGP-PGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISE 315
HI++H P PG+GKT++AKA+ D+ A ++FV S ++ +R L+NF S
Sbjct: 49 HIILHSPSPGTGKTTVAKALC------HDVNADMMFVNGSDCKID---FVRGPLTNFASA 99
Query: 316 A-LDHAPSIVIFDNL 329
A D +++ D
Sbjct: 100 ASFDGRQKVIVIDEF 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPIIRQALSN 311
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL------ 106
Query: 312 FISEA--LDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKS- 368
FI E L+ A +++ A+ F +DIM G KS
Sbjct: 107 FIDEIHRLNKAVEELLYS----------------------AIEDFQIDIMIGKGPSAKSI 144
Query: 369 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428
I P V S + L S RF ++L E K I++ +E D
Sbjct: 145 RIDIQPFTLVGSTTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
Query: 429 EILLDVASKCDG 440
+A + G
Sbjct: 203 AAAEMIAKRSRG 214
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE----QAVRDIFSKATA 600
+VLL GPP GKT + A + FI + P +K IG SE QA++ IF A
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYK 121
Query: 601 AAPCLLFFDEFDSI 614
+ + D+ + +
Sbjct: 122 SQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE----QAVRDIFSKATA 600
+VLL GPP GKT + A + FI + P +K IG SE QA++ IF A
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYK 122
Query: 601 AAPCLLFFDEFDSI 614
+ + D+ + +
Sbjct: 123 SQLSCVVVDDIERL 136
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 513 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLR---SNVLLYGPPGCGKTHIVGAAAAACSL 569
G D + A+ I L +++ + Q PLR N+L+ GP G GKT I A +
Sbjct: 19 GQADAKRAVA--IALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76
Query: 570 RFISVKGPELLN-KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR 628
FI V+ + Y+G + V I T +A L+ E IA R +R
Sbjct: 77 PFIKVEATKFTEVGYVG---KEVDSIIRDLTDSAMKLVRQQE---IAKNRARAEDVAEER 130
Query: 629 VVNQFL 634
+++ L
Sbjct: 131 ILDALL 136
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 254 LPGHIL-IHGPPGSGKTSLAKAVAKSL 279
L G IL + GPPG GKTSLAK++AKSL
Sbjct: 106 LKGPILCLAGPPGVGKTSLAKSIAKSL 132
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-----------NKYIGASEQ 589
R ++N +L G PG GKT A A + + I+ + PE+L KY G E
Sbjct: 199 RTKNNPVLIGEPGVGKT----AIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254
Query: 590 AVRDIFSKATAAAPCLLFFD 609
++ + + A +LF D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNF 312
LP H+L +GPPG+GKTS A+ K L + DL+ + + S E+G I+R+ + NF
Sbjct: 58 LP-HMLFYGPPGTGKTSTILALTKEL-YGPDLMKSRILELNA--SDERGISIVREKVKNF 113
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPIIRQALSN 311
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL------ 106
Query: 312 FISEA--LDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKS- 368
FI E L+ A +++ A+ F +DIM G KS
Sbjct: 107 FIDEIHRLNKAVEELLYS----------------------AIEDFQIDIMIGKGPSAKSI 144
Query: 369 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428
I P V + + L S RF ++L E K I++ +E D
Sbjct: 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
Query: 429 EILLDVASKCDG 440
+A + G
Sbjct: 203 AAAEMIAKRSRG 214
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPII 305
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPII 305
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPII 305
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHA----YLFSGTRGVGKTSIARLLA 66
Query: 277 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
K L + A VC + +E+G +
Sbjct: 67 KGLNCETGITATPCGVCDNCREIEQGRFV 95
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-----------NKYIGASEQ 589
R ++N +L G PG GKT I A + + I+ + PE+L KY G E
Sbjct: 199 RTKNNPVLIGEPGVGKTAI----AEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254
Query: 590 AVRDIFSKATAAAPCLLFFD 609
++ + + A +LF D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 677 PSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
P+ RLDILK+ SRK+ L ++L IA + G SG
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 47
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 59
Query: 277 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
K L + A VC + +E+G +
Sbjct: 60 KGLNCETGITATPCGVCDNCREIEQGRFV 88
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 26 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 81
Query: 277 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
K L + A VC + +E+G +
Sbjct: 82 KGLNCETGITATPCGVCDNCREIEQGRFV 110
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 7 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 62
Query: 277 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
K L + A VC + +E+G +
Sbjct: 63 KGLNCETGITATPCGVCDNCREIEQGRFV 91
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 26 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 81
Query: 277 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
K L + A VC + +E+G +
Sbjct: 82 KGLNCETGITATPCGVCDNCREIEQGRFV 110
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 59
Query: 277 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 305
K L + A VC + +E+G +
Sbjct: 60 KGLNCETGITATPCGVCDNCREIEQGRFV 88
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPII 305
H+L+ GPPG G+T+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSL--EHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNFI 313
H+L GPPG+GKT+ A A+A+ L E+ +D + S E+G ++R + F
Sbjct: 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM------NASDERGIDVVRHKIKEFA 93
Query: 314 SEA-LDHAPSIVIF 326
A + AP +IF
Sbjct: 94 RTAPIGGAPFKIIF 107
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSL--EHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNFI 313
H+L GPPG+GKT+ A A+A+ L E+ +D + S E+G ++R + F
Sbjct: 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM------NASDERGIDVVRHKIKEFA 93
Query: 314 SEA-LDHAPSIVIF 326
A + AP +IF
Sbjct: 94 RTAPIGGAPFKIIF 107
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 513 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLR---SNVLLYGPPGCGKTHIVGAAAAACSL 569
G D + A+ I L +++ Q PLR N+L GP G GKT I A +
Sbjct: 19 GQADAKRAV--AIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANA 76
Query: 570 RFISVKGPELLN-KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR 628
FI V+ + Y+G + V I T +A L+ E IA R +R
Sbjct: 77 PFIKVEATKFTEVGYVG---KEVDSIIRDLTDSAXKLVRQQE---IAKNRARAEDVAEER 130
Query: 629 VVNQFL 634
+++ L
Sbjct: 131 ILDALL 136
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 677 PSPRE--RLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
P P E RLDILK+ SRK L ++L IA + G SG
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASG 39
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK-YIGAS-EQAVRDIFSK--- 597
+SN+LL GP G GKT + A + F L Y+G E ++ + K
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 598 -ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV----VNQFLTEL 637
A +++ D+ D I+ R DN +T V V Q L +L
Sbjct: 111 DVQKAQRGIVYIDQIDKIS--RKSDNPSITRDVSGEGVQQALLKL 153
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK-YIGAS-EQAVRDIFSK--- 597
+SN+LL GP G GKT + A + F L Y+G E ++ + K
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 598 -ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV----VNQFLTEL 637
A +++ D+ D I+ R DN +T V V Q L +L
Sbjct: 111 DVQKAQRGIVYIDQIDKIS--RKSDNPSITRDVSGEGVQQALLKL 153
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 541 RLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELL--NKYIGASE 588
R ++N +L G PG GKT IV A R +S++ LL KY G E
Sbjct: 52 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 111
Query: 589 QAVRDIFSKAT-AAAPCLLFFDEFDSI 614
+ ++ + + + +LF DE ++
Sbjct: 112 ERLKAVIQEVVQSQGEVILFIDELHTV 138
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 254 LPGHILIHGPPGSGKTSLAKAVAKSL 279
LP H+L +GPPG+GKTS A+A+ +
Sbjct: 46 LP-HLLFYGPPGTGKTSTIVALAREI 70
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 258 ILIHGPPGSGKTSLAKAVAKSL 279
+L+ GPPG+GKT+LA A+A+ L
Sbjct: 66 VLLAGPPGTGKTALALAIAQEL 87
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSL 279
H+L+ GPPG GKT+LA +A L
Sbjct: 40 HLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSL 279
H+L+ GPPG GKT+LA +A L
Sbjct: 40 HLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 258 ILIHGPPGSGKTSLAKAVAKSL 279
+L+ GPPG+GKT+LA A+A+ L
Sbjct: 80 VLLAGPPGTGKTALALAIAQEL 101
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSL 279
H+L+ GPPG GKT+LA +A L
Sbjct: 40 HLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 541 RLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELL--NKYIGASE 588
R ++N +L G PG GKT IV A R +S++ LL KY G E
Sbjct: 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248
Query: 589 QAVRDIFSKAT-AAAPCLLFFDEFDSI 614
+ ++ + + + +LF DE ++
Sbjct: 249 ERLKAVIQEVVQSQGEVILFIDELHTV 275
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 8/33 (24%)
Query: 253 PLP-----GHI---LIHGPPGSGKTSLAKAVAK 277
PLP GH+ ++ GPPG+GKT+LA+ +A+
Sbjct: 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR 72
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSL 279
H+L GPPG GKT+ A A+A+ L
Sbjct: 48 HLLFAGPPGVGKTTAALALAREL 70
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI--SVKGPELLN----------KYIGASE 588
R ++N +L G PG GKT IV A + S+KG +L++ KY G E
Sbjct: 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFE 100
Query: 589 QAVRDIFSKAT-AAAPCLLFFDEFDSI 614
+ ++ I + A ++F DE ++
Sbjct: 101 ERLKSILKEVQDAEGQVVMFIDEIHTV 127
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDL 285
+ILI G PG+GKTS+A+ +A L+ + L
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGFQHL 40
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS-EQAVRDIFSKAT 599
N+L+ GP G GKT I A + FI V+ + Y+G + +RD+ A
Sbjct: 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAV 108
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS-EQAVRDIFSKAT 599
N+L+ GP G GKT I A + FI V+ + Y+G + +RD+ A
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAV 107
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS-EQAVRDIFSKAT 599
N+L+ GP G GKT I A + FI V+ + Y+G + +RD+ A
Sbjct: 58 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAV 114
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 258 ILIHGPPGSGKTSLAKAVAKSLEHH 282
I I GP G+GK +L KA+A++L+ H
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWH 32
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 258 ILIHGPPGSGKTSLAKAVAKSLEHH 282
I I GP G+GK +L KA+A++L+ H
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWH 32
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 258 ILIHGPPGSGKTSLAKAVAKSLEHH 282
I I GP G+GK +L KA+A++L+ H
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWH 32
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 540 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574
L L N+LL G PG GKT + A+ L++I+V
Sbjct: 1 LMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 257 HILIHGPPGSGKTSLAKAVAKSLE 280
+IL+ GP GSGKT +A+ +AK L+
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLD 97
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 259 LIHGPPGSGKTSLAKAVAKSLEHHKDLVAH 288
+I P G+GKTSL +A+ K+L K ++H
Sbjct: 11 IISAPSGAGKTSLVRALVKALAEIKISISH 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,862,970
Number of Sequences: 62578
Number of extensions: 882515
Number of successful extensions: 2611
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2421
Number of HSP's gapped (non-prelim): 170
length of query: 799
length of database: 14,973,337
effective HSP length: 107
effective length of query: 692
effective length of database: 8,277,491
effective search space: 5728023772
effective search space used: 5728023772
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)