Query 003743
Match_columns 799
No_of_seqs 624 out of 4462
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 11:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 3.3E-93 7.1E-98 768.8 47.0 543 215-777 186-788 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 4.2E-85 9.2E-90 718.4 43.8 508 219-776 184-692 (693)
3 KOG0735 AAA+-type ATPase [Post 100.0 4E-82 8.7E-87 691.9 49.8 656 37-783 284-941 (952)
4 TIGR01243 CDC48 AAA family ATP 100.0 6.9E-71 1.5E-75 659.9 50.7 543 214-779 173-731 (733)
5 KOG0736 Peroxisome assembly fa 100.0 2.5E-71 5.5E-76 613.0 42.4 505 251-778 427-952 (953)
6 COG0464 SpoVK ATPases of the A 100.0 9.5E-56 2.1E-60 509.1 43.5 481 243-763 6-488 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 3E-51 6.5E-56 422.5 25.6 249 501-760 143-394 (406)
8 KOG0738 AAA+-type ATPase [Post 100.0 8.1E-47 1.8E-51 391.0 23.7 274 503-779 206-490 (491)
9 CHL00195 ycf46 Ycf46; Provisio 100.0 5.4E-43 1.2E-47 393.6 39.0 397 320-776 81-483 (489)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.6E-44 7.9E-49 388.6 22.5 229 505-734 186-418 (802)
11 KOG0734 AAA+-type ATPase conta 100.0 1.1E-42 2.3E-47 371.6 20.4 242 505-758 300-541 (752)
12 KOG0739 AAA+-type ATPase [Post 100.0 2.2E-42 4.7E-47 346.2 17.9 276 501-779 125-437 (439)
13 KOG0741 AAA+-type ATPase [Post 100.0 2.3E-41 4.9E-46 361.1 21.0 435 221-687 223-683 (744)
14 KOG0728 26S proteasome regulat 100.0 1.1E-40 2.4E-45 326.4 21.4 251 502-763 140-393 (404)
15 KOG0727 26S proteasome regulat 100.0 2.1E-40 4.6E-45 324.7 21.9 246 502-758 148-396 (408)
16 COG1222 RPT1 ATP-dependent 26S 100.0 2E-40 4.3E-45 342.4 18.4 248 214-489 146-393 (406)
17 KOG0726 26S proteasome regulat 100.0 2E-39 4.4E-44 323.9 16.4 245 503-758 179-426 (440)
18 KOG0737 AAA+-type ATPase [Post 100.0 6.3E-39 1.4E-43 333.7 20.6 256 504-761 87-362 (386)
19 KOG0652 26S proteasome regulat 100.0 4.3E-39 9.4E-44 316.9 18.2 247 502-759 164-413 (424)
20 KOG0731 AAA+-type ATPase conta 100.0 1.2E-38 2.6E-43 362.6 23.4 242 505-758 307-553 (774)
21 COG1223 Predicted ATPase (AAA+ 100.0 1.6E-38 3.5E-43 313.3 18.8 239 505-760 117-357 (368)
22 PTZ00454 26S protease regulato 100.0 5.9E-38 1.3E-42 346.2 25.6 248 502-760 138-388 (398)
23 KOG0729 26S proteasome regulat 100.0 2.2E-38 4.8E-43 312.8 18.9 246 502-758 170-418 (435)
24 PRK03992 proteasome-activating 100.0 7.9E-37 1.7E-41 339.3 24.7 252 502-764 124-378 (389)
25 PTZ00361 26 proteosome regulat 100.0 2.6E-36 5.7E-41 334.6 23.0 247 502-759 176-425 (438)
26 KOG0740 AAA+-type ATPase [Post 100.0 9E-37 2E-41 329.6 18.1 274 504-780 148-426 (428)
27 COG0465 HflB ATP-dependent Zn 100.0 2.7E-36 5.9E-41 338.7 19.9 242 505-758 146-390 (596)
28 KOG0730 AAA+-type ATPase [Post 100.0 3.6E-36 7.7E-41 332.2 18.7 251 212-491 427-677 (693)
29 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-34 3.3E-39 331.9 23.3 244 504-759 50-296 (495)
30 TIGR03689 pup_AAA proteasome A 100.0 6.3E-34 1.4E-38 319.4 24.3 247 504-757 177-477 (512)
31 TIGR01242 26Sp45 26S proteasom 100.0 1.6E-33 3.4E-38 311.9 24.2 245 503-758 116-363 (364)
32 KOG0651 26S proteasome regulat 100.0 2.1E-34 4.5E-39 291.4 13.1 243 505-758 128-373 (388)
33 TIGR02639 ClpA ATP-dependent C 100.0 2.8E-32 6E-37 326.0 33.5 455 215-730 178-714 (731)
34 KOG0741 AAA+-type ATPase [Post 100.0 6.1E-34 1.3E-38 304.4 16.7 266 506-771 216-505 (744)
35 CHL00176 ftsH cell division pr 100.0 5E-33 1.1E-37 322.4 24.2 242 505-758 179-423 (638)
36 PRK11034 clpA ATP-dependent Cl 100.0 2.3E-31 5E-36 313.5 33.4 457 216-731 183-719 (758)
37 KOG0734 AAA+-type ATPase conta 100.0 5.1E-33 1.1E-37 297.6 16.9 244 214-489 299-542 (752)
38 KOG0732 AAA+-type ATPase conta 100.0 8E-33 1.7E-37 322.4 18.8 259 505-763 261-530 (1080)
39 KOG0732 AAA+-type ATPase conta 100.0 1.8E-32 3.9E-37 319.5 21.7 446 215-690 261-726 (1080)
40 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-32 2.4E-37 286.3 17.3 262 214-493 207-474 (491)
41 KOG0736 Peroxisome assembly fa 100.0 2.8E-32 6.2E-37 303.4 19.5 266 211-493 664-937 (953)
42 KOG0728 26S proteasome regulat 100.0 5.3E-32 1.2E-36 265.5 18.7 296 153-488 93-388 (404)
43 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.4E-32 9.6E-37 327.4 21.5 211 531-758 1618-1877(2281)
44 KOG0727 26S proteasome regulat 100.0 4E-32 8.6E-37 266.7 15.8 247 214-488 150-396 (408)
45 PRK10733 hflB ATP-dependent me 100.0 1.6E-31 3.5E-36 313.7 23.6 243 506-760 149-394 (644)
46 TIGR01243 CDC48 AAA family ATP 100.0 3.6E-31 7.8E-36 317.5 25.6 259 504-762 173-439 (733)
47 PLN00020 ribulose bisphosphate 100.0 1.1E-30 2.3E-35 275.2 24.5 216 538-756 143-389 (413)
48 KOG0731 AAA+-type ATPase conta 100.0 1.4E-31 3E-36 305.1 19.3 250 213-489 305-554 (774)
49 PTZ00454 26S protease regulato 100.0 7.2E-31 1.6E-35 289.9 20.9 248 214-489 140-387 (398)
50 KOG0726 26S proteasome regulat 100.0 1.1E-31 2.3E-36 268.6 9.2 247 213-488 179-426 (440)
51 CHL00195 ycf46 Ycf46; Provisio 100.0 3.9E-30 8.4E-35 289.7 22.0 243 215-492 224-467 (489)
52 KOG0652 26S proteasome regulat 100.0 7E-31 1.5E-35 259.0 13.4 244 215-487 167-411 (424)
53 KOG0729 26S proteasome regulat 100.0 1.2E-30 2.7E-35 258.0 13.2 247 214-489 172-419 (435)
54 TIGR03345 VI_ClpV1 type VI sec 100.0 1.4E-28 3E-33 295.6 33.6 461 215-731 183-834 (852)
55 KOG0743 AAA+-type ATPase [Post 100.0 1.7E-30 3.6E-35 278.2 14.6 269 140-449 135-412 (457)
56 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-30 2.7E-35 261.8 11.9 226 215-461 129-354 (439)
57 PRK03992 proteasome-activating 100.0 1.1E-29 2.3E-34 282.2 20.7 251 214-492 126-376 (389)
58 COG1223 Predicted ATPase (AAA+ 100.0 4.3E-30 9.3E-35 253.8 14.6 238 215-488 117-355 (368)
59 CHL00095 clpC Clp protease ATP 100.0 1.1E-27 2.4E-32 289.5 36.3 461 216-731 176-785 (821)
60 PTZ00361 26 proteosome regulat 100.0 3.4E-29 7.4E-34 278.0 20.4 247 214-488 178-424 (438)
61 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-29 3.1E-34 264.0 15.6 234 211-464 84-318 (386)
62 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-28 2.6E-33 271.9 18.6 227 216-462 664-890 (952)
63 COG0464 SpoVK ATPases of the A 100.0 1.9E-28 4.2E-33 282.4 21.3 249 214-491 237-486 (494)
64 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-28 5.9E-33 280.3 20.3 248 213-489 49-296 (495)
65 COG0465 HflB ATP-dependent Zn 100.0 1.7E-28 3.7E-33 276.0 17.0 248 213-489 144-391 (596)
66 TIGR03689 pup_AAA proteasome A 100.0 9.2E-28 2E-32 269.8 21.7 226 215-458 178-411 (512)
67 PRK10865 protein disaggregatio 100.0 2.7E-26 5.9E-31 276.8 33.8 462 215-731 174-832 (857)
68 TIGR03346 chaperone_ClpB ATP-d 100.0 2.5E-26 5.4E-31 278.5 33.2 463 215-732 169-830 (852)
69 CHL00176 ftsH cell division pr 100.0 1.3E-27 2.9E-32 277.2 20.3 246 214-488 178-423 (638)
70 TIGR01242 26Sp45 26S proteasom 100.0 3.3E-27 7.2E-32 261.4 20.5 246 214-487 117-362 (364)
71 COG0542 clpA ATP-binding subun 99.9 2.4E-26 5.1E-31 264.7 24.7 420 215-692 166-707 (786)
72 CHL00206 ycf2 Ycf2; Provisiona 99.9 4.3E-27 9.2E-32 284.7 18.4 215 246-491 1621-1880(2281)
73 KOG0651 26S proteasome regulat 99.9 2.8E-27 6E-32 239.9 9.4 244 216-487 129-372 (388)
74 PLN00020 ribulose bisphosphate 99.9 3.3E-25 7.1E-30 233.9 20.5 228 215-458 111-352 (413)
75 PRK10733 hflB ATP-dependent me 99.9 2.3E-25 5E-30 261.8 21.3 250 212-490 145-394 (644)
76 KOG0740 AAA+-type ATPase [Post 99.9 7.5E-25 1.6E-29 237.3 16.3 259 214-492 148-408 (428)
77 CHL00181 cbbX CbbX; Provisiona 99.9 7.3E-22 1.6E-26 210.1 20.2 215 509-734 23-261 (287)
78 TIGR02880 cbbX_cfxQ probable R 99.9 2.1E-21 4.4E-26 206.9 19.2 215 510-734 23-260 (284)
79 KOG0743 AAA+-type ATPase [Post 99.9 2.7E-21 5.7E-26 207.8 17.5 204 506-719 198-412 (457)
80 TIGR02881 spore_V_K stage V sp 99.9 3.3E-21 7.1E-26 203.7 18.0 215 508-733 5-244 (261)
81 KOG0744 AAA+-type ATPase [Post 99.9 7.6E-22 1.7E-26 201.3 10.6 235 507-756 140-412 (423)
82 TIGR02881 spore_V_K stage V sp 99.8 2.2E-20 4.7E-25 197.5 18.7 223 217-463 4-244 (261)
83 PF00004 AAA: ATPase family as 99.8 8.2E-21 1.8E-25 178.9 12.4 130 546-676 1-132 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 5.1E-20 1.1E-24 196.0 18.1 223 219-464 23-261 (287)
85 COG2256 MGS1 ATPase related to 99.8 4.4E-20 9.5E-25 195.0 17.0 231 504-786 19-265 (436)
86 TIGR02880 cbbX_cfxQ probable R 99.8 6.2E-20 1.3E-24 195.5 18.2 222 220-464 23-260 (284)
87 KOG0742 AAA+-type ATPase [Post 99.8 3.3E-19 7.1E-24 186.6 17.6 207 507-724 353-589 (630)
88 PF05496 RuvB_N: Holliday junc 99.8 6E-19 1.3E-23 175.7 17.6 196 215-452 20-224 (233)
89 PF05496 RuvB_N: Holliday junc 99.8 7.8E-19 1.7E-23 174.9 16.4 187 504-720 19-222 (233)
90 KOG0742 AAA+-type ATPase [Post 99.8 3.1E-18 6.6E-23 179.4 18.3 215 215-457 351-592 (630)
91 PF00004 AAA: ATPase family as 99.8 3.7E-18 8.1E-23 160.7 14.7 131 258-405 1-132 (132)
92 KOG0744 AAA+-type ATPase [Post 99.8 2.6E-18 5.7E-23 175.6 13.4 249 214-486 137-412 (423)
93 COG0466 Lon ATP-dependent Lon 99.8 8.9E-18 1.9E-22 188.5 16.3 253 142-462 284-562 (782)
94 COG2255 RuvB Holliday junction 99.8 5.4E-17 1.2E-21 164.2 19.7 239 505-784 22-280 (332)
95 TIGR00763 lon ATP-dependent pr 99.7 6E-17 1.3E-21 195.3 20.3 231 509-757 320-585 (775)
96 PRK00080 ruvB Holliday junctio 99.7 2.3E-16 5E-21 172.5 22.4 239 504-783 20-278 (328)
97 COG2255 RuvB Holliday junction 99.7 1.1E-16 2.5E-21 161.8 18.1 199 215-455 22-229 (332)
98 TIGR02639 ClpA ATP-dependent C 99.7 1.1E-16 2.3E-21 192.2 19.8 247 506-781 179-456 (731)
99 TIGR00635 ruvB Holliday juncti 99.7 5.2E-16 1.1E-20 168.2 22.4 233 507-780 2-254 (305)
100 KOG2028 ATPase related to the 99.7 2.1E-16 4.5E-21 163.8 17.9 208 545-785 164-394 (554)
101 PRK00080 ruvB Holliday junctio 99.7 3.5E-16 7.6E-21 171.1 20.9 203 214-458 20-231 (328)
102 KOG2004 Mitochondrial ATP-depe 99.7 4.6E-17 1E-21 181.5 13.7 268 89-437 318-624 (906)
103 TIGR00635 ruvB Holliday juncti 99.7 4.9E-16 1.1E-20 168.4 20.4 199 217-457 2-209 (305)
104 TIGR00763 lon ATP-dependent pr 99.7 4.6E-16 9.9E-21 187.7 19.1 214 219-462 320-559 (775)
105 KOG0989 Replication factor C, 99.7 6.8E-16 1.5E-20 157.9 15.1 190 206-440 23-222 (346)
106 PRK13342 recombination factor 99.7 1.2E-15 2.6E-20 171.8 17.7 225 504-784 7-244 (413)
107 PRK14956 DNA polymerase III su 99.7 2.7E-15 5.8E-20 166.9 18.3 175 502-710 11-214 (484)
108 PRK11034 clpA ATP-dependent Cl 99.7 2E-15 4.4E-20 178.9 18.2 244 506-778 183-457 (758)
109 PRK07003 DNA polymerase III su 99.6 6.1E-15 1.3E-19 169.5 21.2 186 502-722 9-223 (830)
110 PRK14956 DNA polymerase III su 99.6 4.6E-15 1E-19 165.1 17.8 196 211-454 10-227 (484)
111 PRK14962 DNA polymerase III su 99.6 1.1E-14 2.4E-19 164.8 20.4 206 503-758 8-242 (472)
112 PRK12323 DNA polymerase III su 99.6 2.6E-15 5.7E-20 170.5 15.2 186 502-722 9-228 (700)
113 COG0466 Lon ATP-dependent Lon 99.6 8.5E-15 1.8E-19 164.9 19.0 223 510-759 324-585 (782)
114 TIGR02902 spore_lonB ATP-depen 99.6 5.7E-15 1.2E-19 170.4 17.6 232 209-486 55-330 (531)
115 PRK07003 DNA polymerase III su 99.6 1E-14 2.2E-19 167.6 19.2 199 213-455 10-226 (830)
116 COG2256 MGS1 ATPase related to 99.6 7.4E-15 1.6E-19 155.8 16.5 145 255-441 48-205 (436)
117 PRK04195 replication factor C 99.6 1.7E-14 3.6E-19 165.7 20.7 194 208-453 3-203 (482)
118 PRK10787 DNA-binding ATP-depen 99.6 4E-15 8.7E-20 177.8 15.5 252 142-462 283-560 (784)
119 PRK06645 DNA polymerase III su 99.6 3.1E-14 6.8E-19 161.6 21.4 208 502-756 14-254 (507)
120 KOG1051 Chaperone HSP104 and r 99.6 1.2E-13 2.6E-18 162.2 26.5 168 218-421 185-365 (898)
121 PRK14960 DNA polymerase III su 99.6 3.2E-14 6.9E-19 162.2 20.7 183 503-720 9-220 (702)
122 TIGR02902 spore_lonB ATP-depen 99.6 1E-14 2.3E-19 168.2 17.0 211 504-757 60-331 (531)
123 KOG0989 Replication factor C, 99.6 3.5E-14 7.6E-19 145.5 18.8 187 502-721 29-229 (346)
124 PRK14949 DNA polymerase III su 99.6 4.8E-14 1E-18 165.2 22.5 188 502-724 9-225 (944)
125 PRK07994 DNA polymerase III su 99.6 3.2E-14 7E-19 164.7 20.8 185 503-722 10-223 (647)
126 PRK04195 replication factor C 99.6 2.6E-14 5.6E-19 164.1 19.3 191 502-725 7-205 (482)
127 PRK14962 DNA polymerase III su 99.6 3.2E-14 7E-19 161.0 19.5 195 211-453 6-222 (472)
128 PRK12323 DNA polymerase III su 99.6 1.2E-14 2.7E-19 165.1 15.7 198 213-454 10-230 (700)
129 PLN03025 replication factor C 99.6 3.6E-14 7.8E-19 154.5 18.7 197 209-451 3-202 (319)
130 TIGR03345 VI_ClpV1 type VI sec 99.6 2.9E-14 6.2E-19 172.4 19.3 185 505-712 183-390 (852)
131 PLN03025 replication factor C 99.6 8.3E-14 1.8E-18 151.7 21.1 184 502-724 6-202 (319)
132 PRK14961 DNA polymerase III su 99.6 8.2E-14 1.8E-18 154.2 21.3 204 503-756 10-242 (363)
133 PRK10787 DNA-binding ATP-depen 99.6 4.2E-14 9.1E-19 169.0 20.1 226 510-758 323-582 (784)
134 PRK13341 recombination factor 99.6 1.5E-14 3.2E-19 170.8 15.6 237 504-786 23-274 (725)
135 PRK14960 DNA polymerase III su 99.6 4E-14 8.6E-19 161.4 18.4 194 213-454 9-224 (702)
136 KOG2004 Mitochondrial ATP-depe 99.6 1.1E-14 2.5E-19 162.6 13.0 203 510-731 412-653 (906)
137 PRK14958 DNA polymerase III su 99.6 2.9E-14 6.2E-19 163.0 16.7 206 502-757 9-243 (509)
138 PTZ00112 origin recognition co 99.6 5.7E-14 1.2E-18 161.7 18.9 220 509-760 755-1008(1164)
139 PRK10865 protein disaggregatio 99.6 2.4E-14 5.3E-19 173.6 16.3 166 506-694 175-358 (857)
140 PRK14949 DNA polymerase III su 99.6 7.6E-14 1.6E-18 163.5 19.7 197 214-454 11-225 (944)
141 PRK14964 DNA polymerase III su 99.6 6.4E-14 1.4E-18 157.8 18.2 187 502-723 6-221 (491)
142 PRK14958 DNA polymerase III su 99.6 4.5E-14 9.8E-19 161.4 17.2 194 213-454 10-225 (509)
143 PRK06893 DNA replication initi 99.6 7.6E-14 1.7E-18 144.5 17.2 165 256-453 40-207 (229)
144 TIGR02928 orc1/cdc6 family rep 99.6 9.1E-14 2E-18 154.6 18.6 220 509-759 15-275 (365)
145 PRK12402 replication factor C 99.6 2.1E-13 4.5E-18 150.0 20.8 199 208-450 4-227 (337)
146 PRK06645 DNA polymerase III su 99.6 1.4E-13 3E-18 156.4 19.7 198 210-455 12-235 (507)
147 PRK14964 DNA polymerase III su 99.6 1E-13 2.2E-18 156.1 18.4 196 212-455 6-223 (491)
148 PRK14959 DNA polymerase III su 99.6 9E-14 1.9E-18 159.5 18.2 181 503-721 10-219 (624)
149 PRK05563 DNA polymerase III su 99.6 1.9E-13 4.1E-18 158.4 21.0 184 503-721 10-222 (559)
150 PRK12402 replication factor C 99.5 1.1E-13 2.4E-18 152.1 18.3 210 502-757 8-248 (337)
151 PRK08691 DNA polymerase III su 99.5 1.9E-13 4E-18 157.5 20.4 206 502-757 9-243 (709)
152 PRK07994 DNA polymerase III su 99.5 1.6E-13 3.4E-18 159.0 19.7 197 214-454 11-225 (647)
153 PRK07940 DNA polymerase III su 99.5 9.2E-14 2E-18 153.8 17.0 187 506-720 2-215 (394)
154 PRK14963 DNA polymerase III su 99.5 1.3E-13 2.8E-18 157.3 18.5 205 502-757 7-239 (504)
155 PRK00149 dnaA chromosomal repl 99.5 1.5E-13 3.3E-18 156.6 18.1 272 256-597 149-426 (450)
156 PRK05342 clpX ATP-dependent pr 99.5 1.5E-13 3.3E-18 152.8 17.4 238 510-753 72-400 (412)
157 PHA02544 44 clamp loader, smal 99.5 3E-13 6.4E-18 147.5 19.5 184 208-440 10-201 (316)
158 PRK08691 DNA polymerase III su 99.5 2.6E-13 5.5E-18 156.4 19.6 195 213-455 10-226 (709)
159 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.1E-13 4.6E-18 141.1 17.3 168 254-457 37-209 (226)
160 TIGR00390 hslU ATP-dependent p 99.5 2.8E-13 6.2E-18 147.3 18.7 175 510-686 13-342 (441)
161 TIGR02928 orc1/cdc6 family rep 99.5 4.8E-13 1E-17 148.8 21.1 228 218-488 14-274 (365)
162 TIGR03346 chaperone_ClpB ATP-d 99.5 9.2E-14 2E-18 169.3 16.5 185 505-712 169-376 (852)
163 PRK14963 DNA polymerase III su 99.5 4E-13 8.8E-18 153.3 20.3 194 213-454 8-222 (504)
164 PRK14961 DNA polymerase III su 99.5 2.8E-13 6E-18 149.9 18.5 193 214-454 11-225 (363)
165 PRK00411 cdc6 cell division co 99.5 3E-13 6.6E-18 152.0 19.1 221 509-760 30-284 (394)
166 PRK14957 DNA polymerase III su 99.5 4.6E-13 9.9E-18 153.0 20.4 205 503-757 10-243 (546)
167 PRK13342 recombination factor 99.5 3.5E-13 7.6E-18 151.8 19.1 188 213-454 6-201 (413)
168 CHL00095 clpC Clp protease ATP 99.5 1.2E-13 2.5E-18 168.0 16.0 185 506-713 176-382 (821)
169 TIGR00362 DnaA chromosomal rep 99.5 3.1E-13 6.7E-18 152.2 18.2 188 544-757 137-336 (405)
170 PRK14951 DNA polymerase III su 99.5 3E-13 6.4E-18 156.5 18.4 184 502-720 9-226 (618)
171 PF05673 DUF815: Protein of un 99.5 1.2E-12 2.7E-17 132.6 20.5 196 214-451 22-243 (249)
172 PRK14952 DNA polymerase III su 99.5 4.1E-13 8.9E-18 154.8 19.4 199 212-454 6-224 (584)
173 TIGR02397 dnaX_nterm DNA polym 99.5 5.4E-13 1.2E-17 147.8 19.8 183 503-720 8-219 (355)
174 PRK14952 DNA polymerase III su 99.5 9.6E-13 2.1E-17 151.8 22.1 185 503-722 7-222 (584)
175 COG5271 MDN1 AAA ATPase contai 99.5 2E-13 4.3E-18 160.8 16.2 137 541-692 1541-1705(4600)
176 PRK05342 clpX ATP-dependent pr 99.5 8.6E-13 1.9E-17 146.8 20.6 239 215-462 66-383 (412)
177 TIGR00362 DnaA chromosomal rep 99.5 4.8E-13 1E-17 150.7 18.9 177 255-457 136-318 (405)
178 PRK14088 dnaA chromosomal repl 99.5 3.9E-13 8.4E-18 151.9 18.0 276 256-597 131-410 (440)
179 PRK14951 DNA polymerase III su 99.5 3E-13 6.5E-18 156.4 17.3 195 213-455 10-231 (618)
180 PRK07764 DNA polymerase III su 99.5 4.3E-13 9.4E-18 160.2 19.0 200 211-454 7-226 (824)
181 PRK07133 DNA polymerase III su 99.5 1.2E-12 2.6E-17 152.3 22.1 191 502-721 11-221 (725)
182 PRK08084 DNA replication initi 99.5 6.7E-13 1.4E-17 138.0 18.0 165 255-454 45-214 (235)
183 PRK13341 recombination factor 99.5 3E-13 6.5E-18 159.8 17.3 193 212-455 21-223 (725)
184 PRK05201 hslU ATP-dependent pr 99.5 4.1E-13 9E-18 146.1 16.9 175 510-686 16-344 (443)
185 PRK00149 dnaA chromosomal repl 99.5 1.4E-13 3.1E-18 156.9 14.1 189 544-758 149-349 (450)
186 PHA02544 44 clamp loader, smal 99.5 2.9E-13 6.3E-18 147.5 15.6 160 500-689 12-172 (316)
187 PRK00411 cdc6 cell division co 99.5 1.1E-12 2.4E-17 147.5 20.8 228 217-488 28-282 (394)
188 PRK05563 DNA polymerase III su 99.5 5.9E-13 1.3E-17 154.4 18.9 193 214-454 11-225 (559)
189 PRK07764 DNA polymerase III su 99.5 1.2E-12 2.5E-17 156.6 21.6 185 502-721 8-223 (824)
190 PRK14957 DNA polymerase III su 99.5 9.3E-13 2E-17 150.5 19.9 197 214-454 11-225 (546)
191 COG1474 CDC6 Cdc6-related prot 99.5 2.1E-13 4.5E-18 149.5 14.0 218 511-761 19-268 (366)
192 PRK08451 DNA polymerase III su 99.5 7.5E-13 1.6E-17 150.5 18.9 198 211-456 6-225 (535)
193 PRK05896 DNA polymerase III su 99.5 6.1E-13 1.3E-17 152.0 18.1 198 209-454 6-225 (605)
194 PRK14969 DNA polymerase III su 99.5 1.2E-12 2.6E-17 150.8 20.3 186 503-723 10-224 (527)
195 PRK07133 DNA polymerase III su 99.5 6.7E-13 1.4E-17 154.5 17.9 198 209-454 8-224 (725)
196 PRK05896 DNA polymerase III su 99.5 1.8E-12 3.9E-17 148.2 20.6 185 502-721 9-222 (605)
197 TIGR02397 dnaX_nterm DNA polym 99.5 1.2E-12 2.6E-17 145.1 18.7 196 211-454 6-223 (355)
198 PRK14970 DNA polymerase III su 99.5 1.9E-12 4.1E-17 144.1 19.4 197 210-454 8-214 (367)
199 PRK14959 DNA polymerase III su 99.5 1.2E-12 2.6E-17 150.4 18.0 198 211-453 8-224 (624)
200 PRK14965 DNA polymerase III su 99.5 8.4E-13 1.8E-17 153.8 17.0 183 503-720 10-221 (576)
201 PRK14953 DNA polymerase III su 99.5 1.6E-12 3.4E-17 148.0 18.7 185 502-721 9-222 (486)
202 PTZ00112 origin recognition co 99.5 2E-12 4.4E-17 149.1 19.5 198 218-449 754-978 (1164)
203 PRK08451 DNA polymerase III su 99.5 1.8E-12 3.9E-17 147.4 19.0 187 502-723 7-222 (535)
204 PRK14969 DNA polymerase III su 99.5 8.9E-13 1.9E-17 151.9 16.8 194 214-455 11-226 (527)
205 PRK14086 dnaA chromosomal repl 99.5 1.8E-12 3.8E-17 148.3 18.8 175 257-455 316-494 (617)
206 TIGR00382 clpX endopeptidase C 99.5 1.3E-12 2.9E-17 144.3 17.1 237 510-752 78-405 (413)
207 TIGR02903 spore_lon_C ATP-depe 99.5 5.2E-12 1.1E-16 148.1 23.0 223 505-759 150-431 (615)
208 PRK08903 DnaA regulatory inact 99.4 4.1E-12 8.8E-17 131.7 19.5 161 253-455 40-205 (227)
209 PRK08727 hypothetical protein; 99.4 2.9E-12 6.2E-17 133.1 18.1 163 256-454 42-209 (233)
210 PRK14965 DNA polymerase III su 99.4 1.5E-12 3.3E-17 151.6 17.8 193 214-454 11-225 (576)
211 PRK06647 DNA polymerase III su 99.4 4.8E-12 1E-16 146.3 21.5 185 502-721 9-222 (563)
212 PF00308 Bac_DnaA: Bacterial d 99.4 1.9E-12 4.2E-17 132.8 16.3 175 256-454 35-213 (219)
213 PRK14953 DNA polymerase III su 99.4 1E-12 2.2E-17 149.6 15.2 198 209-454 6-225 (486)
214 PRK14970 DNA polymerase III su 99.4 3.7E-12 8.1E-17 141.7 19.3 182 502-721 10-208 (367)
215 PRK06647 DNA polymerase III su 99.4 2.8E-12 6.2E-17 148.1 18.9 193 214-454 11-225 (563)
216 PF05673 DUF815: Protein of un 99.4 4.9E-12 1.1E-16 128.2 18.1 190 504-721 22-243 (249)
217 TIGR00382 clpX endopeptidase C 99.4 5.3E-12 1.2E-16 139.6 19.8 234 219-461 77-388 (413)
218 PRK06305 DNA polymerase III su 99.4 1E-11 2.2E-16 140.7 22.4 181 503-721 11-221 (451)
219 PRK00440 rfc replication facto 99.4 4.8E-12 1E-16 138.1 19.2 199 208-452 6-206 (319)
220 PRK06893 DNA replication initi 99.4 2.3E-12 5E-17 133.5 15.8 181 544-756 40-228 (229)
221 PRK05642 DNA replication initi 99.4 3.3E-12 7.1E-17 132.6 17.0 166 256-457 46-216 (234)
222 PRK12422 chromosomal replicati 99.4 3.2E-12 6.9E-17 144.2 18.0 192 544-758 142-343 (445)
223 PRK14088 dnaA chromosomal repl 99.4 1.6E-12 3.5E-17 146.9 15.5 189 544-757 131-331 (440)
224 PRK09111 DNA polymerase III su 99.4 4.5E-12 9.7E-17 147.1 19.4 196 211-454 16-238 (598)
225 TIGR03420 DnaA_homol_Hda DnaA 99.4 5.3E-12 1.1E-16 130.6 18.1 196 513-755 21-225 (226)
226 PRK09111 DNA polymerase III su 99.4 4.4E-12 9.6E-17 147.1 19.1 186 501-721 16-235 (598)
227 PRK07940 DNA polymerase III su 99.4 4.2E-12 9.1E-17 140.6 17.8 190 217-448 3-213 (394)
228 PRK06305 DNA polymerase III su 99.4 8.7E-12 1.9E-16 141.1 20.7 196 214-453 12-226 (451)
229 PRK14948 DNA polymerase III su 99.4 2.1E-11 4.6E-16 142.5 23.7 175 502-710 9-214 (620)
230 PRK00440 rfc replication facto 99.4 9.6E-12 2.1E-16 135.7 19.6 206 501-758 9-226 (319)
231 PRK12422 chromosomal replicati 99.4 2.8E-12 6E-17 144.6 15.7 172 256-454 142-318 (445)
232 COG2812 DnaX DNA polymerase II 99.4 3.8E-12 8.3E-17 142.9 16.4 195 503-726 10-227 (515)
233 PRK14087 dnaA chromosomal repl 99.4 7.6E-12 1.7E-16 141.6 19.1 272 256-593 142-421 (450)
234 PRK14955 DNA polymerase III su 99.4 4.5E-12 9.7E-17 142.0 16.9 182 502-721 9-227 (397)
235 KOG1969 DNA replication checkp 99.4 1.4E-11 3.1E-16 138.7 20.4 218 208-454 260-512 (877)
236 PRK08084 DNA replication initi 99.4 1.7E-11 3.8E-16 127.4 19.0 179 544-756 46-234 (235)
237 PRK14086 dnaA chromosomal repl 99.4 8.1E-12 1.8E-16 142.9 17.9 188 545-758 316-515 (617)
238 PRK08903 DnaA regulatory inact 99.4 2.4E-11 5.1E-16 126.0 19.8 199 506-756 15-224 (227)
239 COG2812 DnaX DNA polymerase II 99.4 2.3E-12 5.1E-17 144.6 12.7 201 214-456 11-227 (515)
240 PRK14954 DNA polymerase III su 99.4 3E-11 6.5E-16 140.4 22.2 181 503-721 10-227 (620)
241 KOG1969 DNA replication checkp 99.4 7.3E-12 1.6E-16 141.0 16.2 207 501-729 263-517 (877)
242 TIGR00390 hslU ATP-dependent p 99.4 1.2E-11 2.7E-16 134.6 17.3 134 320-458 247-405 (441)
243 TIGR01650 PD_CobS cobaltochela 99.4 4.3E-12 9.3E-17 135.1 13.5 143 254-420 63-234 (327)
244 PRK14955 DNA polymerase III su 99.4 9.6E-12 2.1E-16 139.3 17.0 193 214-454 11-233 (397)
245 PRK14948 DNA polymerase III su 99.4 1.5E-11 3.2E-16 143.8 18.9 194 211-452 8-225 (620)
246 PRK05201 hslU ATP-dependent pr 99.4 9E-12 1.9E-16 135.8 15.7 134 320-458 249-407 (443)
247 PRK06620 hypothetical protein; 99.4 1.2E-11 2.7E-16 126.3 15.7 148 255-453 44-193 (214)
248 TIGR02640 gas_vesic_GvpN gas v 99.4 1.5E-11 3.3E-16 130.0 16.4 167 226-435 5-209 (262)
249 PRK08727 hypothetical protein; 99.4 2.2E-11 4.7E-16 126.5 17.3 177 544-757 42-230 (233)
250 PRK14087 dnaA chromosomal repl 99.4 8.8E-12 1.9E-16 141.1 15.3 191 544-758 142-348 (450)
251 KOG2028 ATPase related to the 99.4 7.2E-12 1.6E-16 130.5 13.3 184 215-449 134-337 (554)
252 PRK14950 DNA polymerase III su 99.3 1.9E-11 4.2E-16 143.2 18.6 185 502-721 9-223 (585)
253 PRK14950 DNA polymerase III su 99.3 2.1E-11 4.6E-16 142.8 18.7 193 213-453 10-225 (585)
254 TIGR02903 spore_lon_C ATP-depe 99.3 2.3E-11 5E-16 142.8 18.9 234 215-486 150-428 (615)
255 PRK14954 DNA polymerase III su 99.3 3.4E-11 7.3E-16 140.0 19.9 193 214-454 11-233 (620)
256 COG2607 Predicted ATPase (AAA+ 99.3 1E-10 2.2E-15 116.2 20.2 196 215-452 56-276 (287)
257 PRK05642 DNA replication initi 99.3 2.3E-11 5E-16 126.3 16.6 179 544-756 46-233 (234)
258 TIGR02640 gas_vesic_GvpN gas v 99.3 1.8E-11 3.8E-16 129.5 15.1 132 544-690 22-198 (262)
259 PRK14971 DNA polymerase III su 99.3 9.9E-11 2.2E-15 136.9 22.3 184 502-720 10-223 (614)
260 PRK14971 DNA polymerase III su 99.3 4.3E-11 9.4E-16 139.9 18.1 195 212-454 10-227 (614)
261 KOG0991 Replication factor C, 99.3 2.1E-11 4.7E-16 120.0 11.7 189 207-441 15-207 (333)
262 PRK09087 hypothetical protein; 99.3 3.1E-11 6.7E-16 124.4 13.3 151 256-454 45-200 (226)
263 COG1221 PspF Transcriptional r 99.3 2.1E-11 4.5E-16 132.9 12.1 216 214-460 73-312 (403)
264 COG1224 TIP49 DNA helicase TIP 99.3 1.5E-10 3.2E-15 120.9 17.7 126 321-485 292-429 (450)
265 PF00308 Bac_DnaA: Bacterial d 99.3 2.9E-11 6.3E-16 124.1 12.1 164 545-722 36-211 (219)
266 COG0593 DnaA ATPase involved i 99.3 1.1E-10 2.5E-15 127.6 17.0 180 255-458 113-295 (408)
267 COG1474 CDC6 Cdc6-related prot 99.3 2.4E-10 5.1E-15 125.6 19.6 220 219-484 17-261 (366)
268 PRK06620 hypothetical protein; 99.3 4.9E-11 1.1E-15 121.9 13.3 164 544-755 45-213 (214)
269 TIGR01650 PD_CobS cobaltochela 99.3 2.1E-11 4.6E-16 129.9 10.5 136 543-692 64-235 (327)
270 PRK13407 bchI magnesium chelat 99.3 6.9E-11 1.5E-15 127.9 14.6 157 505-690 4-216 (334)
271 KOG0991 Replication factor C, 99.2 3.6E-11 7.9E-16 118.4 11.1 189 500-724 18-216 (333)
272 COG1224 TIP49 DNA helicase TIP 99.2 4.8E-10 1E-14 117.2 19.8 127 603-757 292-431 (450)
273 cd00009 AAA The AAA+ (ATPases 99.2 9.3E-11 2E-15 111.5 13.2 121 543-676 19-151 (151)
274 PRK09112 DNA polymerase III su 99.2 2.7E-10 5.9E-15 124.6 17.9 191 504-724 18-245 (351)
275 COG5271 MDN1 AAA ATPase contai 99.2 2.3E-10 4.9E-15 135.9 17.4 142 254-421 1542-1705(4600)
276 COG0593 DnaA ATPase involved i 99.2 2.1E-10 4.5E-15 125.5 15.9 213 543-781 113-343 (408)
277 PRK13531 regulatory ATPase Rav 99.2 1.6E-10 3.4E-15 128.6 14.8 144 251-417 35-192 (498)
278 TIGR00678 holB DNA polymerase 99.2 2.4E-10 5.1E-15 114.9 14.8 150 254-441 13-184 (188)
279 TIGR02974 phageshock_pspF psp 99.2 1.5E-10 3.3E-15 126.1 14.2 201 221-457 1-233 (329)
280 TIGR00678 holB DNA polymerase 99.2 2.3E-10 4.9E-15 115.0 14.3 142 543-710 14-183 (188)
281 PRK11608 pspF phage shock prot 99.2 2.3E-10 5E-15 124.7 15.4 202 217-457 4-240 (326)
282 COG0542 clpA ATP-binding subun 99.2 3.6E-10 7.8E-15 131.7 17.0 169 506-696 167-352 (786)
283 PHA02244 ATPase-like protein 99.2 5.2E-10 1.1E-14 120.5 17.0 128 543-686 119-269 (383)
284 PRK07471 DNA polymerase III su 99.2 1.5E-09 3.2E-14 119.5 20.9 185 504-720 14-239 (365)
285 PRK04132 replication factor C 99.2 4.5E-10 9.8E-15 133.6 17.1 154 542-721 563-730 (846)
286 COG2607 Predicted ATPase (AAA+ 99.2 1.7E-09 3.7E-14 107.6 18.1 195 499-721 50-275 (287)
287 PRK13407 bchI magnesium chelat 99.2 2.4E-10 5.2E-15 123.7 13.2 170 215-418 4-215 (334)
288 cd00009 AAA The AAA+ (ATPases 99.2 5.2E-10 1.1E-14 106.2 13.8 129 254-405 18-151 (151)
289 PHA02244 ATPase-like protein 99.2 5.5E-10 1.2E-14 120.3 15.2 129 255-411 119-266 (383)
290 TIGR02030 BchI-ChlI magnesium 99.1 7.7E-10 1.7E-14 120.1 16.4 154 508-690 3-219 (337)
291 TIGR02030 BchI-ChlI magnesium 99.1 7E-10 1.5E-14 120.4 16.0 169 217-417 2-217 (337)
292 CHL00081 chlI Mg-protoporyphyr 99.1 5.4E-10 1.2E-14 121.1 15.1 158 506-690 14-232 (350)
293 PF06068 TIP49: TIP49 C-termin 99.1 5.7E-10 1.2E-14 118.8 14.6 95 321-443 279-385 (398)
294 PRK05564 DNA polymerase III su 99.1 1.2E-09 2.6E-14 118.8 17.4 171 507-712 2-184 (313)
295 COG3604 FhlA Transcriptional r 99.1 3.4E-10 7.4E-15 123.6 12.7 211 215-461 219-459 (550)
296 TIGR00602 rad24 checkpoint pro 99.1 7.5E-10 1.6E-14 128.7 16.2 232 502-760 77-357 (637)
297 TIGR01817 nifA Nif-specific re 99.1 3.9E-10 8.4E-15 131.6 13.8 203 216-457 193-428 (534)
298 PRK04132 replication factor C 99.1 9E-10 1.9E-14 131.1 16.7 168 255-453 564-735 (846)
299 PF07724 AAA_2: AAA domain (Cd 99.1 1.2E-10 2.6E-15 114.5 7.9 114 542-657 2-132 (171)
300 COG0470 HolB ATPase involved i 99.1 8E-10 1.7E-14 120.8 15.2 149 510-687 2-178 (325)
301 CHL00081 chlI Mg-protoporyphyr 99.1 1.3E-09 2.8E-14 118.2 16.4 169 215-418 13-231 (350)
302 PRK11331 5-methylcytosine-spec 99.1 8.2E-10 1.8E-14 122.1 14.4 125 543-680 194-362 (459)
303 COG0714 MoxR-like ATPases [Gen 99.1 5.4E-10 1.2E-14 122.4 13.0 134 543-689 43-202 (329)
304 PRK09087 hypothetical protein; 99.1 8.7E-10 1.9E-14 113.7 13.7 168 545-758 46-222 (226)
305 TIGR03015 pepcterm_ATPase puta 99.1 7.1E-09 1.5E-13 110.2 21.0 196 255-487 43-265 (269)
306 COG2204 AtoC Response regulato 99.1 6.4E-10 1.4E-14 123.5 12.6 208 216-457 138-374 (464)
307 COG3829 RocR Transcriptional r 99.1 6.1E-10 1.3E-14 123.3 12.4 206 213-455 239-477 (560)
308 PRK10820 DNA-binding transcrip 99.1 1E-09 2.2E-14 127.1 14.8 207 215-457 200-437 (520)
309 PF06068 TIP49: TIP49 C-termin 99.1 2.4E-09 5.1E-14 114.2 16.1 65 508-580 23-89 (398)
310 PF07728 AAA_5: AAA domain (dy 99.1 1.6E-10 3.5E-15 110.1 6.5 115 257-397 1-139 (139)
311 COG1219 ClpX ATP-dependent pro 99.1 3E-09 6.5E-14 109.8 15.9 199 255-460 97-370 (408)
312 PRK15429 formate hydrogenlyase 99.1 2.8E-09 6.1E-14 128.0 18.1 210 215-457 372-609 (686)
313 PRK05564 DNA polymerase III su 99.1 3.2E-09 6.9E-14 115.5 16.7 176 217-441 2-183 (313)
314 PRK11388 DNA-binding transcrip 99.1 2.5E-09 5.4E-14 127.6 17.0 202 216-456 322-553 (638)
315 PF07728 AAA_5: AAA domain (dy 99.1 2.7E-10 5.9E-15 108.4 7.1 110 545-668 1-139 (139)
316 PRK05022 anaerobic nitric oxid 99.1 2.1E-09 4.5E-14 124.4 15.7 203 217-458 185-421 (509)
317 smart00382 AAA ATPases associa 99.1 1E-09 2.3E-14 103.2 11.0 126 543-677 2-147 (148)
318 PRK07399 DNA polymerase III su 99.0 1.7E-09 3.7E-14 116.8 13.8 183 507-721 2-223 (314)
319 COG0714 MoxR-like ATPases [Gen 99.0 1E-09 2.2E-14 120.2 12.1 142 254-418 42-202 (329)
320 TIGR02442 Cob-chelat-sub cobal 99.0 2.1E-09 4.5E-14 127.2 15.4 154 508-690 3-214 (633)
321 PF07724 AAA_2: AAA domain (Cd 99.0 7.4E-10 1.6E-14 109.0 9.4 124 254-386 2-132 (171)
322 KOG2035 Replication factor C, 99.0 9.5E-09 2.1E-13 104.3 17.2 188 209-442 3-222 (351)
323 TIGR03015 pepcterm_ATPase puta 99.0 1.2E-08 2.6E-13 108.5 19.3 188 545-759 45-267 (269)
324 PRK11331 5-methylcytosine-spec 99.0 3.2E-09 6.9E-14 117.5 15.0 135 254-405 193-357 (459)
325 PRK09112 DNA polymerase III su 99.0 6.6E-09 1.4E-13 113.8 17.4 193 214-450 18-241 (351)
326 PRK05707 DNA polymerase III su 99.0 2.7E-09 5.9E-14 115.8 14.3 149 543-713 22-198 (328)
327 PRK07471 DNA polymerase III su 99.0 7E-09 1.5E-13 114.2 17.6 182 214-440 14-230 (365)
328 PRK15424 propionate catabolism 99.0 5.8E-09 1.3E-13 119.8 17.3 208 216-456 216-464 (538)
329 KOG0745 Putative ATP-dependent 99.0 7.3E-09 1.6E-13 110.8 16.1 198 255-461 226-512 (564)
330 TIGR00602 rad24 checkpoint pro 99.0 8.6E-09 1.9E-13 119.9 17.9 210 207-452 72-323 (637)
331 PRK08058 DNA polymerase III su 99.0 9.5E-09 2.1E-13 112.2 17.1 148 508-688 4-180 (329)
332 COG1220 HslU ATP-dependent pro 99.0 7.8E-09 1.7E-13 107.5 15.2 81 604-686 252-345 (444)
333 TIGR02329 propionate_PrpR prop 99.0 2.8E-09 6.1E-14 122.4 13.5 206 215-456 208-449 (526)
334 PF01078 Mg_chelatase: Magnesi 99.0 6.6E-10 1.4E-14 110.7 6.5 46 507-567 1-46 (206)
335 PRK13531 regulatory ATPase Rav 99.0 3.4E-09 7.4E-14 118.1 11.7 152 510-689 21-193 (498)
336 COG1219 ClpX ATP-dependent pro 98.9 7E-09 1.5E-13 107.1 12.4 97 544-640 98-203 (408)
337 PF12775 AAA_7: P-loop contain 98.9 3.1E-09 6.7E-14 112.5 10.2 147 254-421 32-195 (272)
338 PF07726 AAA_3: ATPase family 98.9 2.5E-09 5.3E-14 97.9 7.8 116 257-398 1-130 (131)
339 smart00382 AAA ATPases associa 98.9 1.2E-08 2.6E-13 95.9 12.9 76 255-333 2-91 (148)
340 TIGR00368 Mg chelatase-related 98.9 1.7E-08 3.6E-13 115.3 16.1 143 507-680 190-394 (499)
341 smart00350 MCM minichromosome 98.9 9.3E-09 2E-13 118.8 14.1 176 218-420 202-401 (509)
342 TIGR00764 lon_rel lon-related 98.9 1.8E-08 3.9E-13 118.1 16.4 51 505-570 14-64 (608)
343 PRK05707 DNA polymerase III su 98.9 2.4E-08 5.3E-13 108.4 16.3 153 255-441 22-196 (328)
344 PF00158 Sigma54_activat: Sigm 98.9 1.1E-08 2.3E-13 100.5 12.2 129 221-383 1-143 (168)
345 KOG1514 Origin recognition com 98.9 4.5E-08 9.8E-13 110.9 18.3 201 545-761 424-658 (767)
346 TIGR02442 Cob-chelat-sub cobal 98.9 1E-08 2.3E-13 121.3 13.9 169 217-417 2-212 (633)
347 KOG0990 Replication factor C, 98.9 4E-09 8.6E-14 109.3 8.7 192 204-440 26-224 (360)
348 PRK07399 DNA polymerase III su 98.9 3.9E-08 8.4E-13 106.3 16.0 188 217-450 2-222 (314)
349 KOG2227 Pre-initiation complex 98.9 1.1E-07 2.4E-12 103.2 19.2 232 509-760 150-417 (529)
350 COG0470 HolB ATPase involved i 98.9 1.6E-08 3.6E-13 110.4 13.3 128 257-413 26-175 (325)
351 PF07726 AAA_3: ATPase family 98.9 5.6E-10 1.2E-14 102.1 1.3 109 545-668 1-129 (131)
352 KOG1942 DNA helicase, TBP-inte 98.9 5.3E-08 1.2E-12 99.3 15.1 97 320-444 296-405 (456)
353 smart00763 AAA_PrkA PrkA AAA d 98.9 7.3E-08 1.6E-12 104.1 17.2 56 217-281 48-104 (361)
354 PRK06964 DNA polymerase III su 98.9 2.9E-08 6.2E-13 107.9 14.0 133 541-689 19-203 (342)
355 KOG0745 Putative ATP-dependent 98.8 1E-08 2.2E-13 109.8 10.0 131 544-677 227-386 (564)
356 PF13177 DNA_pol3_delta2: DNA 98.8 4.8E-08 1E-12 95.5 13.9 134 513-677 1-161 (162)
357 TIGR02031 BchD-ChlD magnesium 98.8 3.1E-08 6.7E-13 116.0 14.8 144 255-419 16-174 (589)
358 PRK06871 DNA polymerase III su 98.8 8.4E-08 1.8E-12 103.5 15.6 146 543-712 24-197 (325)
359 KOG2035 Replication factor C, 98.8 2E-07 4.3E-12 94.8 16.9 177 505-719 9-225 (351)
360 COG5245 DYN1 Dynein, heavy cha 98.8 3.2E-08 6.8E-13 117.9 12.5 400 250-689 1489-1963(3164)
361 PF05621 TniB: Bacterial TniB 98.8 1.7E-07 3.7E-12 98.5 16.8 215 507-754 35-285 (302)
362 TIGR02915 PEP_resp_reg putativ 98.8 4.2E-08 9.1E-13 112.3 13.5 201 218-457 138-372 (445)
363 COG1220 HslU ATP-dependent pro 98.8 9.5E-08 2.1E-12 99.6 14.2 113 322-439 252-382 (444)
364 PRK08058 DNA polymerase III su 98.8 4.8E-08 1E-12 106.7 12.6 132 254-417 27-180 (329)
365 PF03215 Rad17: Rad17 cell cyc 98.8 2.9E-07 6.2E-12 105.5 18.9 213 206-458 6-269 (519)
366 PRK07993 DNA polymerase III su 98.8 7.9E-08 1.7E-12 104.8 13.5 149 542-713 23-199 (334)
367 PRK10923 glnG nitrogen regulat 98.7 6.7E-08 1.5E-12 111.4 13.4 202 217-457 136-371 (469)
368 PF13177 DNA_pol3_delta2: DNA 98.7 7.4E-08 1.6E-12 94.2 11.6 123 254-406 18-161 (162)
369 smart00350 MCM minichromosome 98.7 1.1E-07 2.3E-12 110.1 14.9 165 509-691 203-401 (509)
370 TIGR02031 BchD-ChlD magnesium 98.7 8.9E-08 1.9E-12 112.2 14.1 132 543-690 16-174 (589)
371 KOG2680 DNA helicase TIP49, TB 98.7 2.3E-07 5E-12 95.0 15.0 127 321-486 289-427 (454)
372 PF05621 TniB: Bacterial TniB 98.7 4.9E-07 1.1E-11 95.1 17.9 209 222-460 37-272 (302)
373 PRK06871 DNA polymerase III su 98.7 3.9E-07 8.6E-12 98.4 17.5 169 222-440 5-195 (325)
374 PRK11388 DNA-binding transcrip 98.7 8.1E-08 1.8E-12 114.7 13.3 125 506-655 322-467 (638)
375 KOG1514 Origin recognition com 98.7 3.5E-07 7.6E-12 103.8 17.4 209 219-460 396-631 (767)
376 COG3829 RocR Transcriptional r 98.7 6.6E-08 1.4E-12 107.4 11.5 125 506-655 242-391 (560)
377 KOG0990 Replication factor C, 98.7 2E-07 4.4E-12 96.9 14.0 189 500-724 32-234 (360)
378 PRK08769 DNA polymerase III su 98.7 2.4E-07 5.1E-12 99.9 15.2 153 543-716 26-206 (319)
379 KOG1942 DNA helicase, TBP-inte 98.7 2.3E-07 5.1E-12 94.7 14.1 90 602-708 296-399 (456)
380 PRK08116 hypothetical protein; 98.7 9.1E-08 2E-12 101.3 11.2 126 255-408 114-251 (268)
381 smart00763 AAA_PrkA PrkA AAA d 98.7 2.1E-07 4.7E-12 100.5 13.9 62 507-576 48-118 (361)
382 PRK07993 DNA polymerase III su 98.7 4.5E-07 9.7E-12 98.9 16.3 155 255-441 24-197 (334)
383 TIGR02974 phageshock_pspF psp 98.7 2.5E-07 5.3E-12 101.0 14.1 167 543-725 22-231 (329)
384 PRK08116 hypothetical protein; 98.7 6E-08 1.3E-12 102.7 8.8 128 544-687 115-257 (268)
385 PF00158 Sigma54_activat: Sigm 98.7 4.5E-08 9.8E-13 96.1 7.3 97 544-654 23-143 (168)
386 TIGR00764 lon_rel lon-related 98.7 7.6E-07 1.7E-11 104.6 18.8 101 374-487 268-390 (608)
387 PRK06964 DNA polymerase III su 98.7 2E-07 4.3E-12 101.4 12.9 138 253-417 19-202 (342)
388 PF13173 AAA_14: AAA domain 98.7 1.6E-07 3.4E-12 88.2 10.6 122 255-411 2-127 (128)
389 COG0606 Predicted ATPase with 98.7 8.2E-08 1.8E-12 105.4 9.6 47 506-567 176-222 (490)
390 PRK06090 DNA polymerase III su 98.6 2.9E-07 6.3E-12 99.1 13.8 128 542-688 24-178 (319)
391 PRK15115 response regulator Gl 98.6 4.2E-07 9.1E-12 104.0 16.0 197 220-456 135-366 (444)
392 PRK11361 acetoacetate metaboli 98.6 4.1E-07 8.9E-12 104.5 16.0 200 218-457 142-376 (457)
393 TIGR01818 ntrC nitrogen regula 98.6 2.4E-07 5.1E-12 106.7 13.8 201 219-458 134-368 (463)
394 PRK11608 pspF phage shock prot 98.6 2.2E-07 4.7E-12 101.5 12.8 191 508-725 5-238 (326)
395 PF14532 Sigma54_activ_2: Sigm 98.6 9.8E-08 2.1E-12 90.8 8.6 129 222-405 1-137 (138)
396 COG1221 PspF Transcriptional r 98.6 9.9E-08 2.1E-12 104.4 9.4 195 506-727 75-309 (403)
397 PRK08769 DNA polymerase III su 98.6 7.9E-07 1.7E-11 95.9 16.2 155 255-442 26-202 (319)
398 PF01078 Mg_chelatase: Magnesi 98.6 2.3E-08 5E-13 99.7 4.0 46 218-280 2-47 (206)
399 PRK09862 putative ATP-dependen 98.6 3.9E-07 8.5E-12 103.7 14.2 122 543-680 210-391 (506)
400 PRK12377 putative replication 98.6 1.4E-07 3.1E-12 98.1 9.9 73 255-332 101-175 (248)
401 KOG2227 Pre-initiation complex 98.6 8.4E-07 1.8E-11 96.6 15.6 200 216-450 147-369 (529)
402 TIGR01817 nifA Nif-specific re 98.6 3.7E-07 8E-12 106.7 14.0 192 506-724 193-425 (534)
403 TIGR00368 Mg chelatase-related 98.6 2.1E-07 4.5E-12 106.4 11.5 156 216-409 189-394 (499)
404 TIGR02329 propionate_PrpR prop 98.6 2.7E-07 5.9E-12 106.2 12.5 125 506-655 209-358 (526)
405 PF01637 Arch_ATPase: Archaeal 98.6 4.6E-07 1E-11 93.6 12.5 168 254-446 19-231 (234)
406 PRK08699 DNA polymerase III su 98.6 3.3E-07 7.1E-12 99.6 11.7 138 253-417 19-183 (325)
407 PRK08181 transposase; Validate 98.6 1.4E-07 3E-12 99.5 8.2 71 544-616 107-181 (269)
408 KOG1051 Chaperone HSP104 and r 98.6 1.8E-06 3.9E-11 102.6 18.2 138 219-383 562-710 (898)
409 PRK07952 DNA replication prote 98.5 5.4E-07 1.2E-11 93.6 11.9 73 256-333 100-175 (244)
410 PRK15424 propionate catabolism 98.5 3.9E-07 8.5E-12 104.8 11.9 125 506-655 216-373 (538)
411 PRK10820 DNA-binding transcrip 98.5 6.1E-07 1.3E-11 104.1 13.3 126 505-655 200-349 (520)
412 COG1239 ChlI Mg-chelatase subu 98.5 6.2E-07 1.3E-11 97.3 12.3 160 506-692 14-234 (423)
413 KOG2680 DNA helicase TIP49, TB 98.5 3.6E-06 7.9E-11 86.4 17.0 128 603-757 289-428 (454)
414 PRK06090 DNA polymerase III su 98.5 1.3E-06 2.9E-11 94.1 14.5 133 255-417 25-178 (319)
415 COG2204 AtoC Response regulato 98.5 8.3E-07 1.8E-11 99.0 13.1 186 508-721 140-365 (464)
416 PRK13765 ATP-dependent proteas 98.5 9.8E-07 2.1E-11 103.3 14.2 50 504-568 26-75 (637)
417 PRK08699 DNA polymerase III su 98.5 4E-07 8.7E-12 98.9 10.3 131 541-688 19-183 (325)
418 TIGR02655 circ_KaiC circadian 98.5 4.4E-06 9.5E-11 96.2 19.1 77 539-615 259-366 (484)
419 PRK05022 anaerobic nitric oxid 98.5 7.5E-07 1.6E-11 103.3 12.6 192 508-727 186-420 (509)
420 PRK10365 transcriptional regul 98.5 1.1E-06 2.5E-11 100.3 13.0 198 220-456 140-371 (441)
421 PTZ00111 DNA replication licen 98.5 1.7E-06 3.6E-11 103.1 14.2 165 509-690 450-657 (915)
422 PRK08181 transposase; Validate 98.5 3.9E-07 8.5E-12 96.0 8.0 75 254-333 105-180 (269)
423 PF05729 NACHT: NACHT domain 98.4 1.9E-06 4.1E-11 84.0 12.4 147 256-421 1-165 (166)
424 PF03215 Rad17: Rad17 cell cyc 98.4 3.5E-06 7.5E-11 96.7 16.2 205 503-728 13-269 (519)
425 PRK07952 DNA replication prote 98.4 4.5E-07 9.7E-12 94.2 8.1 70 544-615 100-175 (244)
426 PRK15429 formate hydrogenlyase 98.4 2E-06 4.2E-11 103.6 14.9 193 507-726 374-608 (686)
427 PRK12377 putative replication 98.4 3.1E-07 6.7E-12 95.6 6.6 69 544-614 102-175 (248)
428 PRK06835 DNA replication prote 98.4 6.9E-07 1.5E-11 97.0 9.1 70 544-615 184-259 (329)
429 COG1239 ChlI Mg-chelatase subu 98.4 2.5E-06 5.4E-11 92.7 12.8 172 216-421 14-234 (423)
430 PRK06835 DNA replication prote 98.4 2.2E-06 4.7E-11 93.1 12.2 73 256-333 184-259 (329)
431 PF01637 Arch_ATPase: Archaeal 98.4 1.4E-06 3E-11 90.0 10.3 162 543-713 20-229 (234)
432 PTZ00111 DNA replication licen 98.4 1.1E-06 2.5E-11 104.5 10.8 148 252-420 489-658 (915)
433 COG3604 FhlA Transcriptional r 98.4 1.4E-06 3E-11 95.8 10.4 193 507-727 221-456 (550)
434 KOG1970 Checkpoint RAD17-RFC c 98.4 1.8E-05 4E-10 87.8 19.1 214 203-454 66-317 (634)
435 PF13173 AAA_14: AAA domain 98.4 1E-06 2.2E-11 82.6 8.2 69 544-614 3-73 (128)
436 PRK06526 transposase; Provisio 98.4 3.8E-07 8.3E-12 95.6 5.6 71 543-615 98-172 (254)
437 PRK06526 transposase; Provisio 98.4 5.8E-07 1.3E-11 94.2 6.8 75 254-333 97-172 (254)
438 PRK09862 putative ATP-dependen 98.4 1.1E-06 2.4E-11 100.0 9.5 133 253-409 208-391 (506)
439 PF01695 IstB_IS21: IstB-like 98.4 4.9E-07 1.1E-11 89.8 5.8 73 254-331 46-119 (178)
440 PRK09302 circadian clock prote 98.3 3.7E-05 7.9E-10 89.5 21.9 78 539-616 269-377 (509)
441 COG1484 DnaC DNA replication p 98.3 9.9E-07 2.1E-11 92.6 8.0 67 543-614 105-179 (254)
442 PRK06921 hypothetical protein; 98.3 1.5E-06 3.3E-11 91.9 9.2 71 255-331 117-188 (266)
443 PRK09183 transposase/IS protei 98.3 1.1E-06 2.3E-11 92.8 7.9 72 543-615 102-177 (259)
444 PF14532 Sigma54_activ_2: Sigm 98.3 5.5E-07 1.2E-11 85.6 5.1 88 544-656 22-112 (138)
445 COG3283 TyrR Transcriptional r 98.3 6.2E-06 1.3E-10 86.8 13.1 206 215-457 200-432 (511)
446 PRK06921 hypothetical protein; 98.3 1.1E-06 2.4E-11 92.8 7.8 68 543-613 117-188 (266)
447 COG1484 DnaC DNA replication p 98.3 2.9E-06 6.3E-11 89.1 10.8 75 254-333 104-180 (254)
448 KOG3595 Dyneins, heavy chain [ 98.3 5.4E-06 1.2E-10 106.2 15.0 329 256-610 128-531 (1395)
449 PRK08939 primosomal protein Dn 98.3 1.2E-06 2.7E-11 94.3 7.6 70 543-614 156-229 (306)
450 PRK15115 response regulator Gl 98.3 8.6E-06 1.9E-10 93.2 15.0 123 544-683 158-311 (444)
451 PF01695 IstB_IS21: IstB-like 98.3 5.5E-07 1.2E-11 89.4 4.5 70 543-614 47-120 (178)
452 PF13401 AAA_22: AAA domain; P 98.3 3.9E-06 8.5E-11 78.6 10.1 79 255-333 4-100 (131)
453 PRK08939 primosomal protein Dn 98.3 3.8E-06 8.3E-11 90.5 11.0 74 254-332 155-229 (306)
454 PRK13406 bchD magnesium chelat 98.3 9.6E-06 2.1E-10 94.4 14.6 180 256-454 26-227 (584)
455 PRK05917 DNA polymerase III su 98.3 1.1E-05 2.4E-10 85.4 13.7 122 255-406 19-154 (290)
456 PRK09183 transposase/IS protei 98.3 2.5E-06 5.4E-11 90.0 8.8 77 253-333 100-177 (259)
457 KOG2170 ATPase of the AAA+ sup 98.3 1.8E-05 4E-10 81.9 14.6 196 221-441 84-322 (344)
458 KOG1968 Replication factor C, 98.3 2.8E-06 6.1E-11 101.8 9.9 209 208-452 309-531 (871)
459 PF13401 AAA_22: AAA domain; P 98.2 4E-06 8.6E-11 78.6 8.9 98 543-652 4-125 (131)
460 PF12774 AAA_6: Hydrolytic ATP 98.2 3.7E-05 7.9E-10 79.4 16.6 134 255-415 32-176 (231)
461 PRK05917 DNA polymerase III su 98.2 1.1E-05 2.5E-10 85.3 11.3 116 543-677 19-154 (290)
462 COG0606 Predicted ATPase with 98.2 1.8E-06 4E-11 94.9 5.3 49 215-280 175-223 (490)
463 PF12775 AAA_7: P-loop contain 98.2 3.3E-06 7.1E-11 89.6 7.0 138 543-692 33-195 (272)
464 PF12774 AAA_6: Hydrolytic ATP 98.2 2.1E-05 4.5E-10 81.2 12.7 125 544-686 33-176 (231)
465 TIGR02915 PEP_resp_reg putativ 98.2 6.7E-06 1.4E-10 94.2 10.1 98 544-655 163-284 (445)
466 KOG1970 Checkpoint RAD17-RFC c 98.2 4.6E-05 9.9E-10 84.8 15.8 176 544-728 111-321 (634)
467 PF00931 NB-ARC: NB-ARC domain 98.1 2.4E-05 5.2E-10 83.9 13.5 161 253-448 17-201 (287)
468 PF14516 AAA_35: AAA-like doma 98.1 0.00014 2.9E-09 79.8 19.6 179 254-452 30-242 (331)
469 PRK07276 DNA polymerase III su 98.1 5.4E-05 1.2E-09 80.5 15.4 148 542-720 23-198 (290)
470 PRK11361 acetoacetate metaboli 98.1 4.2E-05 9E-10 87.9 15.8 98 544-655 167-288 (457)
471 PRK06851 hypothetical protein; 98.1 1.3E-05 2.8E-10 87.7 10.5 34 544-577 215-251 (367)
472 PRK13406 bchD magnesium chelat 98.1 1.8E-05 3.8E-10 92.3 11.8 122 544-681 26-173 (584)
473 PRK05818 DNA polymerase III su 98.1 2.5E-05 5.5E-10 80.9 11.4 115 542-677 6-147 (261)
474 PRK13765 ATP-dependent proteas 98.1 3.2E-05 6.9E-10 90.8 13.7 83 374-458 277-381 (637)
475 COG3284 AcoR Transcriptional a 98.1 1.5E-05 3.3E-10 90.5 10.2 195 222-455 316-538 (606)
476 PRK07132 DNA polymerase III su 98.1 8.6E-05 1.9E-09 79.6 15.4 124 544-688 19-160 (299)
477 PRK07132 DNA polymerase III su 98.1 0.00013 2.8E-09 78.3 16.7 148 255-440 18-177 (299)
478 PHA02624 large T antigen; Prov 98.0 1.1E-05 2.4E-10 91.9 8.5 129 251-405 427-561 (647)
479 PRK10365 transcriptional regul 98.0 2.8E-05 6.1E-10 88.9 11.5 81 544-638 163-258 (441)
480 PRK10923 glnG nitrogen regulat 98.0 5.9E-05 1.3E-09 87.0 13.3 166 544-725 162-369 (469)
481 KOG0478 DNA replication licens 98.0 8.1E-05 1.8E-09 84.6 13.7 170 219-418 429-625 (804)
482 COG3267 ExeA Type II secretory 98.0 0.00034 7.3E-09 71.5 16.7 176 257-459 53-255 (269)
483 KOG2228 Origin recognition com 98.0 5E-05 1.1E-09 79.8 11.0 165 219-419 24-219 (408)
484 cd01120 RecA-like_NTPases RecA 98.0 2.6E-05 5.6E-10 75.5 8.3 72 546-617 2-100 (165)
485 TIGR02237 recomb_radB DNA repa 97.9 5.7E-05 1.2E-09 77.1 11.1 81 250-333 7-110 (209)
486 KOG1968 Replication factor C, 97.9 1.4E-05 3.1E-10 95.9 7.6 165 545-726 359-535 (871)
487 PF00910 RNA_helicase: RNA hel 97.9 2.4E-05 5.3E-10 70.8 7.4 23 546-568 1-23 (107)
488 COG1618 Predicted nucleotide k 97.9 0.00019 4.2E-09 68.0 13.3 31 253-283 3-33 (179)
489 PF05729 NACHT: NACHT domain 97.9 6.4E-05 1.4E-09 73.1 10.2 141 545-692 2-165 (166)
490 PLN03210 Resistant to P. syrin 97.9 0.00021 4.6E-09 91.2 17.5 180 216-442 181-389 (1153)
491 cd01120 RecA-like_NTPases RecA 97.9 6.7E-05 1.4E-09 72.6 9.6 74 258-334 2-99 (165)
492 TIGR01818 ntrC nitrogen regula 97.9 5.1E-05 1.1E-09 87.3 10.2 167 544-726 158-366 (463)
493 PRK07276 DNA polymerase III su 97.9 0.00022 4.8E-09 75.9 14.0 129 253-416 22-172 (290)
494 PRK14700 recombination factor 97.8 5E-05 1.1E-09 79.8 8.6 137 638-787 2-143 (300)
495 TIGR02237 recomb_radB DNA repa 97.8 5E-05 1.1E-09 77.5 8.2 116 538-653 7-148 (209)
496 PF00910 RNA_helicase: RNA hel 97.8 6.4E-05 1.4E-09 68.1 7.5 24 258-281 1-24 (107)
497 KOG0480 DNA replication licens 97.8 0.00012 2.6E-09 82.6 11.1 203 215-454 341-571 (764)
498 PHA02774 E1; Provisional 97.8 0.00014 3E-09 82.9 11.6 119 251-406 430-555 (613)
499 COG4650 RtcR Sigma54-dependent 97.8 6.3E-05 1.4E-09 77.2 7.8 82 252-333 205-295 (531)
500 PRK05818 DNA polymerase III su 97.8 0.00024 5.1E-09 73.8 11.9 122 253-406 5-147 (261)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-93 Score=768.79 Aligned_cols=543 Identities=36% Similarity=0.577 Sum_probs=485.5
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|.+++|++....++.+.+.... .++.|..+|+.+|+++|||||||||||+||+++|++++ .+++.+++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~---~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isA 256 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIK---HPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISA 256 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhc---CchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecc
Confidence 4569999999999999988887743 78899999999999999999999999999999999999 99999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
.++.....|+.+++++++|.+|....|||+||||||++.+.|.. .+. ....++..+|+..||++..... ...+
T Consensus 257 peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqr-eMErRiVaQLlt~mD~l~~~~~---~g~~ 329 (802)
T KOG0733|consen 257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQR-EMERRIVAQLLTSMDELSNEKT---KGDP 329 (802)
T ss_pred hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHH-HHHHHHHHHHHHhhhccccccc---CCCC
Confidence 99999999999999999999999999999999999999976654 233 3345889999999999875422 2246
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
|+||++||+|+.+||+|+|+|||++.|.+..|+..+|.+||+.++++..+.- +-.+..||+.|.||.|+||..||..|+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998766654 334889999999999999999999999
Q ss_pred HHHhcccccCCC----------c-----cc------------------------------------ccccccceecccch
Q 003743 455 HAAVGRYLHSDS----------S-----FE------------------------------------KHIKPTLVRDDFSQ 483 (799)
Q Consensus 455 ~~a~~r~~~~~~----------~-----~~------------------------------------~~~~~~l~~edf~~ 483 (799)
..|++|.+.... . .+ ....-.+..+||..
T Consensus 409 ~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~ 488 (802)
T KOG0733|consen 409 FVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEE 488 (802)
T ss_pred HHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHH
Confidence 999999764211 0 00 00011244678889
Q ss_pred hcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHH
Q 003743 484 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 563 (799)
Q Consensus 484 al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~al 563 (799)
|+..+.|++.++....+|. +.|++|+++++++.+|...+.+|+++|++|+..|+..+.|+|||||||||||.+|+|+
T Consensus 489 Al~~iQPSakREGF~tVPd---VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 489 ALSKIQPSAKREGFATVPD---VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHhcCcchhcccceecCC---CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 9999999998887776665 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcccc
Q 003743 564 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 643 (799)
Q Consensus 564 A~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~ 643 (799)
|++.+++|+.|.+++|+++|+|++|..++.+|.+|+...||||||||+|+|+++|+........|++|+||++|||++..
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHc--cCCCCCcccHHHHHHHCC--CCcHHHHHHH
Q 003743 644 TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR--KLPLADDVDLEAIAHMTE--GFSGADLQAL 719 (799)
Q Consensus 644 ~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~~~~~la~~~~--g~sg~di~~~ 719 (799)
.+|+|||+||+|+.+|||++||||||+.+|+++|+.++|.+|||...+ +.++..++|++.||..+. ||||+||..+
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaL 725 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAAL 725 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999 888999999999999877 9999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCC-----CCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 003743 720 LSDAQLSAVHEILNNIDSNEPGK-----MPVITDALLKSIASKARPSVSEAEKLRLYSIYGQF 777 (799)
Q Consensus 720 ~~~a~~~a~~~~~~~~~~~~~~~-----~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f 777 (799)
|++|...|+++.+.......... ...+|..||++|++.++|++++.+..+|......+
T Consensus 726 vreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~ 788 (802)
T KOG0733|consen 726 VREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSR 788 (802)
T ss_pred HHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhh
Confidence 99999999999887555443221 23578999999999999999999988776665544
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-85 Score=718.36 Aligned_cols=508 Identities=35% Similarity=0.592 Sum_probs=471.3
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
.++.|...+...+.+-+..-+. .+..|...|+++|+++|+|||||||||.+++++|++.+ +++..+++..+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~--~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~~~i~~peli 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLR--HPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFLFLINGPELI 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhc--chhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC------ceeEecccHHHH
Confidence 5778888888888777655554 67789999999999999999999999999999999999 889999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhcC-CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEE
Q 003743 299 LEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 377 (799)
Q Consensus 299 ~~~~~~~~~~l~~~~~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~v 377 (799)
.+..+++...++..|..+.... |+++||||+|.+++++....+ ...++..+|+.++|+..... .+++
T Consensus 256 ~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~~~-------~viv 323 (693)
T KOG0730|consen 256 SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKPDA-------KVIV 323 (693)
T ss_pred HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcCcC-------cEEE
Confidence 9999999999999999999988 999999999999986654332 34478899999999987443 4999
Q ss_pred EEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 378 VASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 378 I~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
+++||+++.||++++| |||+..+.++.|+..+|.+|++.+++..+.. ++..+..++..++||+++||..+|..|...+
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999988877 6778999999999999999999999999888
Q ss_pred hcccccCCCcccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhh
Q 003743 458 VGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 537 (799)
Q Consensus 458 ~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~ 537 (799)
.++ +.++|..|+..+.|++.+++... .++++|++|+|++++|..|++.+.||+++|+.|.+
T Consensus 402 ~r~----------------~~~~~~~A~~~i~psa~Re~~ve---~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r 462 (693)
T KOG0730|consen 402 TRR----------------TLEIFQEALMGIRPSALREILVE---MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFAR 462 (693)
T ss_pred hhh----------------hHHHHHHHHhcCCchhhhheecc---CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHH
Confidence 765 56788999999999999987744 45699999999999999999999999999999999
Q ss_pred CCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 538 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 538 ~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
+|+.++++||||||||||||++|+|+|++++++|+.+++++++++|+|++|+.++++|.+|+...||||||||||++...
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~ 542 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGS 542 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCC
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD 697 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~ 697 (799)
|++..+++.+|++++||++|||++...+|+|||+||+|+.||+|++||||||++||||+|+.+.|.+||+.+++++++.+
T Consensus 543 R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~ 622 (693)
T KOG0730|consen 543 RGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE 622 (693)
T ss_pred cCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc
Confidence 98777799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003743 698 DVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQ 776 (799)
Q Consensus 698 ~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~ 776 (799)
++|++.||..|+||||+||.++|++|+..|+++.+. ...|+.+||.+|++.++++++.++++.|+++..+
T Consensus 623 ~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 623 DVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred cccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999875 3579999999999999999999999988877543
No 3
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-82 Score=691.92 Aligned_cols=656 Identities=42% Similarity=0.631 Sum_probs=569.2
Q ss_pred cCCCCCcccCCCCcchhhHHHhhcCCCCCchhHHHHHhhhhchhhHHHHHHHHHHHHHHHhhcccccccceeccccceEE
Q 003743 37 KTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLH 116 (799)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (799)
+.+--+++....|..|+.|..+.+-+.-+..+... .+++|++ .+|.|+.+.. +.++.| |+.|
T Consensus 284 e~dik~~l~~~iw~~~n~i~~~~~i~~l~~vg~p~----~tkk~l~--------~eL~A~~~~t----s~li~~--t~k~ 345 (952)
T KOG0735|consen 284 EDDIKTGLKFVIWNLNNPISSSKFIEELKRVGLPD----ETKKNLS--------SELVAAKLKT----SYLIDG--TLKL 345 (952)
T ss_pred ccchhcCceeeeeccccchhhhhhhHHHHhccCCc----ccccchh--------Hhhhhhhhcc----ccccCC--ceEE
Confidence 33455777789999999998888877666655555 7889998 5888888776 777777 9999
Q ss_pred EEEeeccccccCCCCCccCccchhhhhccccceeeEEEEecccccccCCCCCceeeeeeccccCCCCHHHHHHHHhcCCC
Q 003743 117 FEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNS 196 (799)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 196 (799)
|++.+.+++++..++...+..|.+.....+.|.|+.+.-++..+...+.++.|+.+......
T Consensus 346 ~~ie~~es~~~l~nq~eV~~~w~q~~vt~~~~~ei~~~~~v~~~~~~g~K~~~~~l~~~~~e------------------ 407 (952)
T KOG0735|consen 346 FEIEVLESVSSLSNQEEVVRLWDQLKVTKMPPLEIKITSDVNLPVLAGIKENSPDLVMSPFE------------------ 407 (952)
T ss_pred EEeeccccccccccchHHhhHHHhhccccCCchheeeeeeecchhhhcchhcCcccccCcCC------------------
Confidence 99999999999999999999999999999999999999999878888888877777655441
Q ss_pred CCceEEEEeeecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHH
Q 003743 197 GDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 276 (799)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA 276 (799)
+.++ -....++...+ ..+.+ +..+.++||+||+|||||.|+++++
T Consensus 408 ~d~i----------------------~~~s~kke~~n---~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~ 452 (952)
T KOG0735|consen 408 HDFI----------------------QVPSYKKENAN---QELSP----------VFRHGNILLNGPKGSGKTNLVKALF 452 (952)
T ss_pred Ccee----------------------ecchhhhhhhh---hhccc----------ccccccEEEeCCCCCCHhHHHHHHH
Confidence 1111 12222332222 12211 3456789999999999999999999
Q ss_pred HHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHH
Q 003743 277 KSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 356 (799)
Q Consensus 277 ~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll 356 (799)
+++. ....+++.+++|+.+.+.....+...++.+|..+..+.|+||+|||+|.+++ .+..++.+.......+..++.
T Consensus 453 ~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-~s~~e~~q~~~~~~rla~fln 529 (952)
T KOG0735|consen 453 DYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-ASSNENGQDGVVSERLAAFLN 529 (952)
T ss_pred HHhc--cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-cCcccCCcchHHHHHHHHHHH
Confidence 9987 4455899999999999999999999999999999999999999999999997 334444455555567777777
Q ss_pred HHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHh
Q 003743 357 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 436 (799)
Q Consensus 357 ~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~ 436 (799)
+....+...+. .+.+|++.+....++|.|.+|++|..++.++.|...+|.+|++..+++....+..+.++.++.
T Consensus 530 qvi~~y~~~~~------~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~ 603 (952)
T KOG0735|consen 530 QVIKIYLKRNR------KIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSV 603 (952)
T ss_pred HHHHHHHccCc------EEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 77777765543 379999999999999999999999999999999999999999999999988888888999999
Q ss_pred hcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHH
Q 003743 437 KCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTD 516 (799)
Q Consensus 437 ~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~ 516 (799)
.|+||.+.|+..++++|.+.|+...+. .....++.++|.++++.+.|..++.+....+. ..+|.+++|+.+
T Consensus 604 ~TEGy~~~DL~ifVeRai~~a~leris-------~~~klltke~f~ksL~~F~P~aLR~ik~~k~t--gi~w~digg~~~ 674 (952)
T KOG0735|consen 604 KTEGYLATDLVIFVERAIHEAFLERIS-------NGPKLLTKELFEKSLKDFVPLALRGIKLVKST--GIRWEDIGGLFE 674 (952)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhc-------cCcccchHHHHHHHHHhcChHHhhhccccccC--CCCceecccHHH
Confidence 999999999999999999998833221 12236889999999999999999998776654 378999999999
Q ss_pred HHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHH
Q 003743 517 IQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFS 596 (799)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~ 596 (799)
+++.|.+.++||.++|.+|...+++.+.|+|||||||||||.+|.++|..++..||.+.+++++++|+|.+|++++.+|.
T Consensus 675 ~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~ 754 (952)
T KOG0735|consen 675 AKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFE 754 (952)
T ss_pred HHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCC
Q 003743 597 KATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF 676 (799)
Q Consensus 597 ~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~ 676 (799)
+|+..+||||||||+|+++|+|++++.++.+|++|+||++|||++..++|.|+|+|.+|+.||||++||||+|+.+++|+
T Consensus 755 rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~ 834 (952)
T KOG0735|consen 755 RAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPL 834 (952)
T ss_pred HhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 677 PSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 677 p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
|++.+|.+|++........+.++|++.+|..|+||||+|+..++..|.+.|+++.+...+ +....+.++.-.+.....
T Consensus 835 P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~--~~~~~p~~~~~~~~si~~ 912 (952)
T KOG0735|consen 835 PDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED--EEGVVPSIDDASLESIFS 912 (952)
T ss_pred CCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC--ccccCCccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999987665 334445566666555544
Q ss_pred --hcCCCCCHHHHHHHHHHHHHhhcCCCc
Q 003743 757 --KARPSVSEAEKLRLYSIYGQFLDSKKS 783 (799)
Q Consensus 757 --~~~~~~~~~~~~~~~~~~~~f~~~~~~ 783 (799)
+.+|+.++-+-...++.+.+|+.++++
T Consensus 913 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~s 941 (952)
T KOG0735|consen 913 DSKRKPSRSALDNRKGQDVYSQFLSDEKS 941 (952)
T ss_pred ccCCCccccccchhhhhhHHHhhcCcceE
Confidence 667888888888899999999988743
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.9e-71 Score=659.87 Aligned_cols=543 Identities=34% Similarity=0.566 Sum_probs=472.5
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...+|++|+|++.+++.+.+.+...+. .++.|..+|+.+++++|||||||||||++++++|++++ .+++.++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~--~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~------~~~i~i~ 244 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMK--HPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG------AYFISIN 244 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEe
Confidence 346789999999999999998876665 77899999999999999999999999999999999998 7788999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
+..+.....+.....++.+|..+....|+||||||+|.+++.+....+ .....+...|+..++++... +
T Consensus 245 ~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~----~~~~~~~~~Ll~~ld~l~~~-------~ 313 (733)
T TIGR01243 245 GPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG----EVEKRVVAQLLTLMDGLKGR-------G 313 (733)
T ss_pred cHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc----hHHHHHHHHHHHHhhccccC-------C
Confidence 988888777888888999999998889999999999999865543221 12235677888888876543 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
.+++|++||.++.+|++++++|||+..+.++.|+.++|.+|++.+.....+. .+..++.+++.++||+++|+..+++.|
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~gadl~~l~~~a 392 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAALAKEA 392 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999776654332 234488999999999999999999999
Q ss_pred HHHHhcccccCCCc-c-------cccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHh
Q 003743 454 VHAAVGRYLHSDSS-F-------EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMI 525 (799)
Q Consensus 454 ~~~a~~r~~~~~~~-~-------~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~ 525 (799)
+..+++|.+..... . .......++.+||..++..+.|+..++..... +...|++++|++.+++.|.+.+
T Consensus 393 ~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~---~~~~~~di~g~~~~k~~l~~~v 469 (733)
T TIGR01243 393 AMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEV---PNVRWSDIGGLEEVKQELREAV 469 (733)
T ss_pred HHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccc---cccchhhcccHHHHHHHHHHHH
Confidence 99998887542211 0 01122457788999999988888766554333 4578999999999999999999
Q ss_pred hccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeE
Q 003743 526 ELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCL 605 (799)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~I 605 (799)
.+|+.+++.+...++.++.++|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+...|||
T Consensus 470 ~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~i 549 (733)
T TIGR01243 470 EWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAI 549 (733)
T ss_pred HhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCC-CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHH
Q 003743 606 LFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 684 (799)
Q Consensus 606 LfiDEid~l~~~r~~~-~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~ 684 (799)
|||||||++++.|+.. .....++++++|+.+||++....+++||+|||+|+.||++++|||||+++++||+|+.++|.+
T Consensus 550 ifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~ 629 (733)
T TIGR01243 550 IFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKE 629 (733)
T ss_pred EEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHH
Confidence 9999999999988754 345678999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC-------CCCCCCcccHHHHHHHHhh
Q 003743 685 ILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN-------EPGKMPVITDALLKSIASK 757 (799)
Q Consensus 685 Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~-------~~~~~~~it~e~l~~a~~~ 757 (799)
||+.+.++.++..+++++.||..++||||+||.++|++|+..|+++........ .......|+.+||.+|+++
T Consensus 630 i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~ 709 (733)
T TIGR01243 630 IFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKK 709 (733)
T ss_pred HHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875432211 0112357999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q 003743 758 ARPSVSEAEKLRLYSIYGQFLD 779 (799)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~f~~ 779 (799)
++|+++++++..|++|...|..
T Consensus 710 ~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 710 VKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred cCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999998853
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-71 Score=613.01 Aligned_cols=505 Identities=39% Similarity=0.622 Sum_probs=428.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLD 330 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD 330 (799)
++.....+||+|+||||||++++++|.+++ .|++.++|.++.......++.++...|..++...|+||||-++|
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg------~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~d 500 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELG------LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLD 500 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhC------CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 445556799999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHH
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASE 410 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~e 410 (799)
.+.. +.++ ....++...+...+. .+........+++|++|+..+.+++.+++ -|.+.|.++.|+++|
T Consensus 501 vl~i---d~dg----ged~rl~~~i~~~ls----~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~q 567 (953)
T KOG0736|consen 501 VLGI---DQDG----GEDARLLKVIRHLLS----NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQ 567 (953)
T ss_pred eeee---cCCC----chhHHHHHHHHHHHh----cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHH
Confidence 9973 2222 112234444443333 01111123469999999999999999999 777789999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCC---------Ccccccccccceeccc
Q 003743 411 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSD---------SSFEKHIKPTLVRDDF 481 (799)
Q Consensus 411 r~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~---------~~~~~~~~~~l~~edf 481 (799)
|.+||+.++....+. .+..+..++.++.||+.+++..++..+...+..+..... ..........++++||
T Consensus 568 Rl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf 646 (953)
T KOG0736|consen 568 RLEILQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDF 646 (953)
T ss_pred HHHHHHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHH
Confidence 999999998876543 344488899999999999999998776444433322111 0011112367889999
Q ss_pred chhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHH
Q 003743 482 SQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 561 (799)
Q Consensus 482 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 561 (799)
.+++.+....... ....|+.+++.|+|++|++++|..+.+.+..|++||++|.. |++++.|+|||||||||||.+||
T Consensus 647 ~kals~~~~~fs~--aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAK 723 (953)
T KOG0736|consen 647 DKALSRLQKEFSD--AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAK 723 (953)
T ss_pred HHHHHHHHHhhhh--hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHH
Confidence 9998865443322 23567788899999999999999999999999999999985 67888999999999999999999
Q ss_pred HHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC--CCCchhhHHHHHHHhhccC
Q 003743 562 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDG 639 (799)
Q Consensus 562 alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~--~~~~~~~r~~~~ll~~ld~ 639 (799)
|+|.++..+|+.|.+++++++|+|++|+++|++|++||..+||||||||+|+++|+|+. +++++.+|++++||.+||+
T Consensus 724 AVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg 803 (953)
T KOG0736|consen 724 AVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG 803 (953)
T ss_pred HHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999874 6789999999999999999
Q ss_pred cc--ccCcEEEEEecCCCCccChhhcCCCCcceeeecCCC-CHHHHHHHHHHHHccCCCCCcccHHHHHHHCC-CCcHHH
Q 003743 640 VE--VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP-SPRERLDILKVISRKLPLADDVDLEAIAHMTE-GFSGAD 715 (799)
Q Consensus 640 ~~--~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p-~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~-g~sg~d 715 (799)
+. ....|+|||+||+|+.|||||+||||||+.+|++++ +.+.+..||+...+++.++.++|+..+|+.+. .|||+|
T Consensus 804 ls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGAD 883 (953)
T KOG0736|consen 804 LSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGAD 883 (953)
T ss_pred ccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhH
Confidence 98 456899999999999999999999999999999998 46778999999999999999999999999874 799999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC------CCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh
Q 003743 716 LQALLSDAQLSAVHEILNNIDSN------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFL 778 (799)
Q Consensus 716 i~~~~~~a~~~a~~~~~~~~~~~------~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~ 778 (799)
+..+|.+|++.|++|.....+.. ....+..|++|||.+++++.+||++..|..+|+.+..+|.
T Consensus 884 lYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 884 LYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 99999999999999988766544 2345568999999999999999999999999999999884
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-56 Score=509.06 Aligned_cols=481 Identities=36% Similarity=0.551 Sum_probs=419.7
Q ss_pred cchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCc
Q 003743 243 SGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPS 322 (799)
Q Consensus 243 ~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~ 322 (799)
.+..+...++.++++++++||||||||.+++++|.. . .....++.......+.+.....+...+..+....|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 78 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G------AEFLSINGPEILSKYVGESELRLRELFEEAEKLAPS 78 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c------CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCC
Confidence 455677788999999999999999999999999998 3 333667777778888888888899999999999999
Q ss_pred EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEe
Q 003743 323 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQ 402 (799)
Q Consensus 323 IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~ 402 (799)
++++||+|.+.+.+.. ............+...+++.. . +.+++++.+|.+..+++++++|+||+..+.
T Consensus 79 ii~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~-------~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (494)
T COG0464 79 IIFIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-R-------GQVIVIGATNRPDGLDPAKRRPGRFDREIE 146 (494)
T ss_pred eEeechhhhcccCccc----cccchhhHHHHHHHHhccccc-C-------CceEEEeecCCccccChhHhCccccceeee
Confidence 9999999999976655 112223366777888888766 1 137888899999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccc
Q 003743 403 LPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFS 482 (799)
Q Consensus 403 ~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~ 482 (799)
+..|+...+.+|+........... +..+..++..+.|+.++++..++..+...+..+.. ........++.+++.
T Consensus 147 ~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~ 220 (494)
T COG0464 147 VNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDFE 220 (494)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHHH
Confidence 999999999898887665443332 45588999999999999999999998888887752 011223457788899
Q ss_pred hhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHH
Q 003743 483 QAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGA 562 (799)
Q Consensus 483 ~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~a 562 (799)
.++..+.|. +.. ....+...|.+++|++.+++.+++.+.+++.+++.|...+++++.++|||||||||||++|++
T Consensus 221 ~~l~~~~~~--~~~---~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAka 295 (494)
T COG0464 221 EALKKVLPS--RGV---LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKA 295 (494)
T ss_pred HHHHhcCcc--ccc---ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHH
Confidence 888888776 222 233355889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc
Q 003743 563 AAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV 642 (799)
Q Consensus 563 lA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~ 642 (799)
+|.+++.+|+.+..+++.++|+|+++++++.+|..|+...||||||||+|++++.|+....+...|++++++.+|++++.
T Consensus 296 va~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 296 VALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred HHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999877776668999999999999999
Q ss_pred cCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCC--CCcccHHHHHHHCCCCcHHHHHHHH
Q 003743 643 LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPL--ADDVDLEAIAHMTEGFSGADLQALL 720 (799)
Q Consensus 643 ~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~--~~~~~~~~la~~~~g~sg~di~~~~ 720 (799)
..+|+||+|||+|+.+|+|++|||||+++++||+|+.++|.+|++.+++.... ..++++..+++.++||+|+||..+|
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995544 5789999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCCCC
Q 003743 721 SDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVS 763 (799)
Q Consensus 721 ~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~ 763 (799)
++|++.++++.. ...||.+||..|+++++|+++
T Consensus 456 ~ea~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 456 REAALEALREAR----------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHHHHHhc----------cCCccHHHHHHHHHhcCCCCC
Confidence 999999998864 246999999999999999987
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-51 Score=422.46 Aligned_cols=249 Identities=42% Similarity=0.660 Sum_probs=234.6
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 501 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 501 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.+.+..+|++++|++++++.+++.+++|+++|++|...|+.||+|||||||||||||.+|+|+|+..++.|+.+.+++++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCch---hhHHHHHHHhhccCccccCcEEEEEecCCCCc
Q 003743 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 657 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~---~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ 657 (799)
.+|+|+..+.++++|+.|+.++||||||||||+++++|-.+..+- -.|..-+||.+|||+...++|=||++||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 999999999999999999999999999999999999987654443 34677788999999999999999999999999
Q ss_pred cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC
Q 003743 658 LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS 737 (799)
Q Consensus 658 ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 737 (799)
|||||+||||||+.|+||+|+.+.|.+||+.+.+++.+.+++|++.|++.++|+||+||+++|.+|.+.|+++-.
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R----- 377 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR----- 377 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCCCCCcccHHHHHHHHhhcCC
Q 003743 738 NEPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 738 ~~~~~~~~it~e~l~~a~~~~~~ 760 (799)
..||++||.+|.+++-.
T Consensus 378 ------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ------CeecHHHHHHHHHHHHh
Confidence 37999999999988743
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-47 Score=391.02 Aligned_cols=274 Identities=32% Similarity=0.537 Sum_probs=251.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
.+.+.|++|.|+.++|+.|++.+.+|+..|+.|+... +|=++||++||||||||+||+|+|.+++..||.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 3458999999999999999999999999999998754 455789999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC-CCchhhHHHHHHHhhccCcccc-C---cEEEEEecCCCCc
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVL-T---GVFVFAATSRPDL 657 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~-~~~~~~r~~~~ll~~ld~~~~~-~---~vlvi~ttn~~~~ 657 (799)
|-|++|+.++-+|+.|+..+|++|||||||+|+++|+.+ ......|+.++||.+|||+... . .|+|+|+||.||.
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 999999999999999999999999999999999999865 4567889999999999998743 3 3999999999999
Q ss_pred cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC
Q 003743 658 LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS 737 (799)
Q Consensus 658 ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 737 (799)
||.||+| ||.+.|++|+|+.+.|..+++..++....+++++++.|+..++||||+||.++|++|.+.+++|.+.....
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999988755432
Q ss_pred C------CCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc
Q 003743 738 N------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 779 (799)
Q Consensus 738 ~------~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~ 779 (799)
. .+.-..+++.+||+.|+.+++|+++...+.+|++|...|.+
T Consensus 443 ~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 2 12233679999999999999999999999999999999965
No 9
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=5.4e-43 Score=393.62 Aligned_cols=397 Identities=22% Similarity=0.368 Sum_probs=309.3
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeE
Q 003743 320 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 399 (799)
Q Consensus 320 ~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~ 399 (799)
.|+|++|.|+|.++. + . .+.+.|.++........ ..+|+.+.+ ..+|+.|.+ ...
T Consensus 81 ~~~~~vl~d~h~~~~---~------~----~~~r~l~~l~~~~~~~~-------~~~i~~~~~--~~~p~el~~---~~~ 135 (489)
T CHL00195 81 TPALFLLKDFNRFLN---D------I----SISRKLRNLSRILKTQP-------KTIIIIASE--LNIPKELKD---LIT 135 (489)
T ss_pred CCcEEEEecchhhhc---c------h----HHHHHHHHHHHHHHhCC-------CEEEEEcCC--CCCCHHHHh---cee
Confidence 378999999999982 1 0 23444444333332221 245555432 457777776 344
Q ss_pred EEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceec
Q 003743 400 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 479 (799)
Q Consensus 400 ~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~e 479 (799)
.+.+|.|+.+|+.+++..+....+..+++..++.+++.+.|++..+++.++..+... ... +..+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~-~~~---------------~~~~ 199 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT-YKT---------------IDEN 199 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCC---------------CChh
Confidence 789999999999999999888778889999999999999999999999888765421 111 1111
Q ss_pred ccchhcccccccccc-cccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHH
Q 003743 480 DFSQAMHEFLPVAMR-DITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 558 (799)
Q Consensus 480 df~~al~~~~p~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 558 (799)
++...++.......+ .+.... .....|++++|++.+|+.+.+.... +.......|+++++++|||||||||||+
T Consensus 200 ~~~~i~~~k~q~~~~~~~le~~--~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTl 274 (489)
T CHL00195 200 SIPLILEEKKQIISQTEILEFY--SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSL 274 (489)
T ss_pred hHHHHHHHHHHHHhhhcccccc--CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHH
Confidence 111111110000000 011111 1346799999999999999875542 2344566788999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC-CCCchhhHHHHHHHhhc
Q 003743 559 IVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH-DNTGVTDRVVNQFLTEL 637 (799)
Q Consensus 559 la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~-~~~~~~~r~~~~ll~~l 637 (799)
+|+++|++++.+++.++++.+.++|+|+++..++++|..|+..+||||||||||+++.++.. ...+...+++.+|++.|
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l 354 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL 354 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876432 34566789999999999
Q ss_pred cCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC--CcccHHHHHHHCCCCcHHH
Q 003743 638 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA--DDVDLEAIAHMTEGFSGAD 715 (799)
Q Consensus 638 d~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~--~~~~~~~la~~~~g~sg~d 715 (799)
+. ...+|+||+|||+++.+|++++|+||||+.++|++|+.++|.+||+.++++.... .+.+++.|+..++||||+|
T Consensus 355 ~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAd 432 (489)
T CHL00195 355 SE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAE 432 (489)
T ss_pred hc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHH
Confidence 83 4578999999999999999999999999999999999999999999999886533 5789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHH
Q 003743 716 LQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPS--VSEAEKLRLYSIYGQ 776 (799)
Q Consensus 716 i~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~--~~~~~~~~~~~~~~~ 776 (799)
|.++|.+|+..|+.+. ..+|.+|+..|++.+.|. +..++++.+.+|...
T Consensus 433 I~~lv~eA~~~A~~~~------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 433 IEQSIIEAMYIAFYEK------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHHHHHHHHcC------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 9999999998886431 358999999999999996 466788888888763
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-44 Score=388.61 Aligned_cols=229 Identities=40% Similarity=0.694 Sum_probs=221.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
++.|.+++|++.....|.+.+.. +++|+.|...|+.|++|+||+||||||||++|+|+|.++++||+.|+++++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 56799999999999999999887 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc----cCcEEEEEecCCCCccCh
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV----LTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~----~~~vlvi~ttn~~~~ld~ 660 (799)
|++|++++++|..|+...|||+||||||.+.++|...+..+..|++.+|++.||++.. +++|+||||||+|+.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 9999999999999999999999999999999999998899999999999999999864 368999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcc
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNN 734 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 734 (799)
+|+|+||||+.|.+..|+..+|.+||+.+++++.++.++|+..||+.|.||.|+|+.++|.+|+..|++|++..
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998863
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=371.61 Aligned_cols=242 Identities=37% Similarity=0.614 Sum_probs=228.5
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
++.|+++.|.++.|+.|.+++. .++.|+.|.++|-..|+||||+||||||||.||+|+|.+.++||+..+++++-..|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 5789999999999999999887 589999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcC
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR 664 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r 664 (799)
|...+.++++|..|+..+||||||||||++.++|......+.+..+|+||.+|||+..+.+|+||++||.|+.||+||.|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 99999999999999999999999999999999998776668899999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 003743 665 PGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMP 744 (799)
Q Consensus 665 ~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~ 744 (799)
|||||++|.+|.||..-|.+||+.++.+.+++.++|+..||+-+.||+|+|+.++++.|+..|... +..
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d-----------ga~ 527 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD-----------GAE 527 (752)
T ss_pred CCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-----------Ccc
Confidence 999999999999999999999999999999999999999999999999999999999999888544 234
Q ss_pred cccHHHHHHHHhhc
Q 003743 745 VITDALLKSIASKA 758 (799)
Q Consensus 745 ~it~e~l~~a~~~~ 758 (799)
.+|+.|++.|-.++
T Consensus 528 ~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 528 MVTMKHLEFAKDRI 541 (752)
T ss_pred cccHHHHhhhhhhe
Confidence 68999998876543
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-42 Score=346.18 Aligned_cols=276 Identities=30% Similarity=0.559 Sum_probs=250.4
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 501 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 501 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.+.+++.|+++.|++..++.|++.+.+|+++|.+|..-. .|-+++||||||||||+.||+|+|.+.+..|+.|+.++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 345679999999999999999999999999999998643 4456899999999999999999999999999999999999
Q ss_pred hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc-cCcEEEEEecCCCCccC
Q 003743 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLD 659 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~-~~~vlvi~ttn~~~~ld 659 (799)
++|+|++++.++.+|+.||.+.|+||||||||++++.|+...+....|+..+||.+|.|+-. .++|+|+++||-|+.||
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLD 283 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999864 56899999999999999
Q ss_pred hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccC--
Q 003743 660 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNID-- 736 (799)
Q Consensus 660 ~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~-- 736 (799)
.|++| ||++.||+|+|+...|..+++.++...+.. .+.|+..|++.++||||+||.-+++.|.++.+++...+.-
T Consensus 284 sAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk 361 (439)
T KOG0739|consen 284 SAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFK 361 (439)
T ss_pred HHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhh
Confidence 99999 999999999999999999999999877654 6788999999999999999999999999999987653311
Q ss_pred ---C----C--------------------------CCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc
Q 003743 737 ---S----N--------------------------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 779 (799)
Q Consensus 737 ---~----~--------------------------~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~ 779 (799)
. . +..-.|++|+.|+..++...+|++...++.+++++-..|..
T Consensus 362 ~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 362 KVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred ccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 0 0 11235789999999999999999999999999999998865
No 13
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=361.13 Aligned_cols=435 Identities=20% Similarity=0.293 Sum_probs=316.2
Q ss_pred ccCchhHHHHHHHHH--HhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 221 LSWMGTTASDVINRI--KVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 221 l~g~~~~~~~i~~~l--~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
|.|++.....|-.+. ...+ .+..-.++|++.-+++|||||||||||.+||.+.+.|+...+. .||..++.
T Consensus 223 IGGLd~EFs~IFRRAFAsRvF---pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePK-----IVNGPeIL 294 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVF---PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPK-----IVNGPEIL 294 (744)
T ss_pred cccchHHHHHHHHHHHHhhcC---CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCc-----ccCcHHHH
Confidence 477888888777654 2222 3456778999999999999999999999999999999965443 37888888
Q ss_pred ccchhhHHHHHHHHHHHHHhc--------CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 003743 299 LEKGPIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 370 (799)
Q Consensus 299 ~~~~~~~~~~l~~~~~~a~~~--------~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~ 370 (799)
..+.|+.+..++.+|..|.+- .-.||++||||++|.+|+...++..- ...+.++|+.-||++..-
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGV--hD~VVNQLLsKmDGVeqL----- 367 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV--HDTVVNQLLSKMDGVEQL----- 367 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCc--cHHHHHHHHHhcccHHhh-----
Confidence 899999999999999988542 12399999999999887766553222 226788999999987653
Q ss_pred CCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh---cccCCCHHHHHHHHhhcCCCChhhHH
Q 003743 371 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR---RSLECSDEILLDVASKCDGYDAYDLE 447 (799)
Q Consensus 371 ~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~---~~~~~~~~~l~~la~~~~g~s~~dl~ 447 (799)
++++||+.||+++.+|+||+|||||..++++..|++..|.+|++.+..+ .+.--++..++++|..+..|+|++|+
T Consensus 368 --NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 368 --NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE 445 (744)
T ss_pred --hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH
Confidence 3599999999999999999999999999999999999999999866543 33333444599999999999999999
Q ss_pred HHHHHHHHHHhcccccCCC----cccccccccceecccchhccccccccccccc--ccccCCCCCCCCCCCChHHHHHHH
Q 003743 448 ILVDRTVHAAVGRYLHSDS----SFEKHIKPTLVRDDFSQAMHEFLPVAMRDIT--KTSAEGGRSGWDDVGGLTDIQNAI 521 (799)
Q Consensus 448 ~lv~~A~~~a~~r~~~~~~----~~~~~~~~~l~~edf~~al~~~~p~~~~~~~--~~~~~~~~~~~~~i~g~~~~~~~l 521 (799)
.+++.|...|+.|.+..+. .....+...++++||..|+.++.|+...... ..........|..-+ -+.+
T Consensus 446 glVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v-----~~il 520 (744)
T KOG0741|consen 446 GLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPV-----TRIL 520 (744)
T ss_pred HHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccH-----HHHH
Confidence 9999999999999886542 2234455778999999999999987643211 111111123343221 1111
Q ss_pred HHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHH----HHHHHHHH
Q 003743 522 KEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQ----AVRDIFSK 597 (799)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~----~i~~~f~~ 597 (799)
.+-. .+-+..+.....+..++||.||||+|||+||..+|...+.||+.+-.++- .+|.+|. .++.+|+.
T Consensus 521 ~~G~----llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---miG~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 521 DDGK----LLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---MIGLSESAKCAHIKKIFED 593 (744)
T ss_pred hhHH----HHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---ccCccHHHHHHHHHHHHHH
Confidence 1100 00011111223445689999999999999999999999999998755442 2555553 58899999
Q ss_pred hHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc-cCcEEEEEecCCCCccC-hhhcCCCCcceeeecC
Q 003743 598 ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLD-AALLRPGRLDRLLFCD 675 (799)
Q Consensus 598 a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~-~~~vlvi~ttn~~~~ld-~al~r~gRf~~~i~~~ 675 (799)
|....-+||++|+|++|.--.. -..-++.-++..|+..+....+ ..+.+|++||++.+.|. -.++. -|+..+++|
T Consensus 594 AYkS~lsiivvDdiErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vp 670 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVP 670 (744)
T ss_pred hhcCcceEEEEcchhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecC
Confidence 9998889999999999863211 1122345556666666655443 45688999998766653 23444 688888888
Q ss_pred CCCH-HHHHHHHH
Q 003743 676 FPSP-RERLDILK 687 (799)
Q Consensus 676 ~p~~-~~r~~Il~ 687 (799)
.-+. ++..+++.
T Consensus 671 nl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 671 NLTTGEQLLEVLE 683 (744)
T ss_pred ccCchHHHHHHHH
Confidence 7654 66666654
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=326.36 Aligned_cols=251 Identities=39% Similarity=0.603 Sum_probs=232.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+.+.++-++|++...+.+++.+++|.+||++|..+|+..|.++|||||||||||.+|+++|+...+.|+.++++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|+....++++|-.|+.++|+|||.||||++.+.|..++.+ ...|..-+|+..|||++...++-||.+||+.+-+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 9999999999999999999999999999999999988765443 3346666788889999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||++||||+|+.|+||+|+++.|.+|++.+.+++++...+++..+|....|.||++++.+|.+|.+.|+++-.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr------ 373 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR------ 373 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCC
Q 003743 739 EPGKMPVITDALLKSIASKARPSVS 763 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~ 763 (799)
..+|.|||+-|+.++-...+
T Consensus 374 -----vhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 374 -----VHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred -----ccccHHHHHHHHHHHHhccc
Confidence 36899999999887754333
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-40 Score=324.75 Aligned_cols=246 Identities=37% Similarity=0.612 Sum_probs=230.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+.+.+.+++|++-.|+.+++.+++|+.+.+++++.|+.|++|+|+|||||||||++|+|+|+...+.|+.+.++++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCch---hhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~---~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|.|+....++++|..|+.+.|+||||||+|+++.+|=....+. ..|++-+|++.|||+....+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999998885555443 357788889999999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||++||||+|+.|+||+|+..+++-++..+..++.+.+++|++.+..+-+..||+||..+|++|.+.|++...-
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry----- 382 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY----- 382 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCCCcccHHHHHHHHhhc
Q 003743 739 EPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~ 758 (799)
.|...||+++.+..
T Consensus 383 ------vvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 383 ------VVLQKDFEKAYKTV 396 (408)
T ss_pred ------eeeHHHHHHHHHhh
Confidence 68889999998764
No 16
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-40 Score=342.44 Aligned_cols=248 Identities=23% Similarity=0.336 Sum_probs=221.9
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...++++|+|++.++++|++.+..-|. .++.|...|+.+|++||||||||||||.||+|+|+..+ +.|+.+.
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~--~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrvv 217 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLK--NPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRVV 217 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhccccc--CHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEec
Confidence 467899999999999999998876665 89999999999999999999999999999999999998 9999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.+++...+.|+....++++|..|+.+.||||||||||++.+.|.+...+ ....++++.-.|++.||++....
T Consensus 218 gSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~-gDrEVQRTmleLL~qlDGFD~~~------- 289 (406)
T COG1222 218 GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTS-GDREVQRTMLELLNQLDGFDPRG------- 289 (406)
T ss_pred cHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCC-chHHHHHHHHHHHHhccCCCCCC-------
Confidence 9999999999999999999999999999999999999999887765544 45566677777888899987653
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+|-||++||+++.|||||+|||||++.|+||.|+.+.|.+||+.+.++..+. .+..++.++..++|+||+||+++|.+|
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999988776553 233499999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
.+.|++. .+..++++||..|..++.
T Consensus 369 Gm~AiR~-----------~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 369 GMFAIRE-----------RRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred hHHHHHh-----------ccCeecHHHHHHHHHHHH
Confidence 9999876 346789999999887754
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-39 Score=323.88 Aligned_cols=245 Identities=35% Similarity=0.592 Sum_probs=227.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
.+.-.|.+++|++...+.+++.+++|+.||+.+...|+.|+.+++|||+||||||.+|+|+|+...+.|+.+-+++++.+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCch---hhHHHHHHHhhccCccccCcEEEEEecCCCCccC
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 659 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~---~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld 659 (799)
|.|+..+.++++|+.|..++|+|+||||||.+..+|-...++- ..|..-+||..|||+...+.|-||.+||+.+.||
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD 338 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccC
Confidence 9999999999999999999999999999999998885444332 3355557788899999999999999999999999
Q ss_pred hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 003743 660 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 739 (799)
Q Consensus 660 ~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 739 (799)
|||.||||+|+.|.||.|+...+..|+..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+++...
T Consensus 339 PaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm------ 412 (440)
T KOG0726|consen 339 PALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM------ 412 (440)
T ss_pred HhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988543
Q ss_pred CCCCCcccHHHHHHHHhhc
Q 003743 740 PGKMPVITDALLKSIASKA 758 (799)
Q Consensus 740 ~~~~~~it~e~l~~a~~~~ 758 (799)
.+|.+||..|.+++
T Consensus 413 -----~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 413 -----KVTMEDFKKAKEKV 426 (440)
T ss_pred -----hccHHHHHHHHHHH
Confidence 68999999987765
No 18
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-39 Score=333.65 Aligned_cols=256 Identities=36% Similarity=0.580 Sum_probs=232.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCC-CCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
..+.|++|+|++.+++.+++.+..|+.+|++|...+ ++++.|+|||||||||||.+|+|+|++.+++|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 347899999999999999999999999999997554 4789999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCc--EEEEEecCCCCccCh
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG--VFVFAATSRPDLLDA 660 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~--vlvi~ttn~~~~ld~ 660 (799)
|+|++++.++.+|..|..-+||||||||+|++.+.|..........+-++|....||+...++ |+|+|+||+|..+|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998766677778899999999999987655 999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhccc--CCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNI--DSN 738 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~--~~~ 738 (799)
|++| |+.+.++++.|+..+|.+||+.+++...+++++|+..+|..++||||.||+++|+.|+...+++.+... ...
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d 324 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLD 324 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchh
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999988764 110
Q ss_pred C---------------CCCCCcccHHHHHHHHhhcCCC
Q 003743 739 E---------------PGKMPVITDALLKSIASKARPS 761 (799)
Q Consensus 739 ~---------------~~~~~~it~e~l~~a~~~~~~~ 761 (799)
. .....+++++||..+...+.++
T Consensus 325 ~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 325 LDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred hhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 0 0113678889998888866554
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-39 Score=316.88 Aligned_cols=247 Identities=35% Similarity=0.554 Sum_probs=228.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+.-.+.+++|++...+.|.+.+.+|+.|++.|...|++||+++|+|||||||||.+|+|.|...+..|..+.++.++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
.|+|...+.+++.|..|+...|+||||||+|.+..+|-.+... ...|..-+||..|||+...+.|-||++||+.+-+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 9999999999999999999999999999999999887543322 2345566778889999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||++|.||+|+.|+||.|+.+.|.+|++.+.+++.+..+++++.||+.+++|.|++.+++|-+|.+.|+++...
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at----- 398 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT----- 398 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988543
Q ss_pred CCCCCCcccHHHHHHHHhhcC
Q 003743 739 EPGKMPVITDALLKSIASKAR 759 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~ 759 (799)
.|+-+||.+.+..++
T Consensus 399 ------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 399 ------EVTHEDFMEGILEVQ 413 (424)
T ss_pred ------cccHHHHHHHHHHHH
Confidence 588899988887654
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=362.63 Aligned_cols=242 Identities=39% Similarity=0.643 Sum_probs=227.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
.+.|.|+.|.+++++.|+|++. .+++|+.|.+.|...|+|+||+||||||||.||+|+|.+.++||+.+++++++..++
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 4789999999999999999887 589999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC----CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH----DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~----~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
|.....++++|..|+...||||||||||.+...|+. ..+......+|+||.+||++...+.|+|+|+||+|+-+|+
T Consensus 386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~ 465 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDP 465 (774)
T ss_pred ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCH
Confidence 999999999999999999999999999999999842 3455667899999999999999999999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 739 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 739 (799)
|++||||||+.|+++.|+...|.+|++.+++...++ +++++..||..|.||+|+||.++|++|+..|+++...
T Consensus 466 allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~------ 539 (774)
T KOG0731|consen 466 ALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR------ 539 (774)
T ss_pred HhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC------
Confidence 999999999999999999999999999999999986 8899999999999999999999999999999887543
Q ss_pred CCCCCcccHHHHHHHHhhc
Q 003743 740 PGKMPVITDALLKSIASKA 758 (799)
Q Consensus 740 ~~~~~~it~e~l~~a~~~~ 758 (799)
.|+..|+..|++.+
T Consensus 540 -----~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 540 -----EIGTKDLEYAIERV 553 (774)
T ss_pred -----ccchhhHHHHHHHH
Confidence 68999999999843
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=313.25 Aligned_cols=239 Identities=34% Similarity=0.565 Sum_probs=214.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
...+++++|+++.|+..+-++. .++.|+.|..+. |+++|||||||||||++|+|+|++.+.+++.+++.++++.|+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 4679999999999998876665 478889888865 569999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC-CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhc
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 663 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~-~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~ 663 (799)
|...+.++++|+.|+..+|||+||||+|.++-.|.-. -.+....++|.||++||++..+.+|+.||+||+|+.||+|++
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 9999999999999999999999999999998766432 245567899999999999999999999999999999999999
Q ss_pred CCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHH-HHHHHHHHHHHHHhcccCCCCCCC
Q 003743 664 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQA-LLSDAQLSAVHEILNNIDSNEPGK 742 (799)
Q Consensus 664 r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~-~~~~a~~~a~~~~~~~~~~~~~~~ 742 (799)
+ ||...|+|.+|+.++|.+|++.+++++++.-+.++..+++.+.|+||+||.. ++..|.+.|+.+ +
T Consensus 273 s--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e-----------d 339 (368)
T COG1223 273 S--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE-----------D 339 (368)
T ss_pred h--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh-----------c
Confidence 9 9999999999999999999999999999999999999999999999999964 566666666544 2
Q ss_pred CCcccHHHHHHHHhhcCC
Q 003743 743 MPVITDALLKSIASKARP 760 (799)
Q Consensus 743 ~~~it~e~l~~a~~~~~~ 760 (799)
+..|+.+|++.|+.+.++
T Consensus 340 ~e~v~~edie~al~k~r~ 357 (368)
T COG1223 340 REKVEREDIEKALKKERK 357 (368)
T ss_pred hhhhhHHHHHHHHHhhcc
Confidence 346999999999987554
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.9e-38 Score=346.18 Aligned_cols=248 Identities=38% Similarity=0.578 Sum_probs=229.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+...|++|+|++.+++.+++.+.+|+.+++.|...|+.+++++|||||||||||++|+++|+.++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCC---chhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|+++..++++|..|+...|+||||||+|.++.+|..... ....+++.+|+..|+++....+++||+|||+|+.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 999999999999999999999999999999999987743322 23457888999999998888889999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
||+++|||||++.|+|++|+.++|.+||+.++.+.++..+++++.++..++||||+||.++|++|++.|+++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------- 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------- 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCCCcccHHHHHHHHhhcCC
Q 003743 739 EPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~ 760 (799)
...|+.+||.+|+..+..
T Consensus 371 ----~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ----RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ----CCccCHHHHHHHHHHHHh
Confidence 247999999999988644
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=312.76 Aligned_cols=246 Identities=34% Similarity=0.582 Sum_probs=227.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+...+.+++|..+..+.|++.++.|+.+|+.|-.+|+.|++++|||||||||||.+|+|+|+..++-|+.+-+++++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|+....++++|+.|+...-|||||||||.+.+.|=.+..+ ...|..-+++..|||+...+++-|+.+||+|+.|
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 9999999999999999999999999999999999887444333 3345566677889999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
||||+||||+|+.++|.+|+.+.|.+|++.+.+.+.++.++-++.||+.+.+-+|++|+.+|.+|.+.|++.-.
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr------ 403 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR------ 403 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCcccHHHHHHHHhhc
Q 003743 739 EPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~ 758 (799)
...|+.||..|+.++
T Consensus 404 -----k~atekdfl~av~kv 418 (435)
T KOG0729|consen 404 -----KVATEKDFLDAVNKV 418 (435)
T ss_pred -----hhhhHHHHHHHHHHH
Confidence 367889998887654
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.9e-37 Score=339.27 Aligned_cols=252 Identities=40% Similarity=0.651 Sum_probs=230.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
..+...|++++|++++++.+.+.+..|+.+++.|...|..+++++|||||||||||++|+++|+.++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|.++..++.+|..|+...|+||||||+|.+++.+..+... ...+.+.+++.+++++...++++||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 9999999999999999999999999999999999877644322 2356677888889988877889999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|++++|||||++.|+||+|+.++|.+||+.+++...+..++++..|+..++||+|+||+++|++|++.|+++.
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------- 356 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------- 356 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999998888999999999999999999999999999998762
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCCH
Q 003743 739 EPGKMPVITDALLKSIASKARPSVSE 764 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~~ 764 (799)
...|+.+||.+|+..++++...
T Consensus 357 ----~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 357 ----RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred ----CCCcCHHHHHHHHHHHhccccc
Confidence 2469999999999999885543
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=334.64 Aligned_cols=247 Identities=36% Similarity=0.594 Sum_probs=226.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+...|.+|+|++..++.+.+.+..|+.++++|...++.++.++|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|.|+++..++.+|..|+.+.|+||||||||.++.+|.....+ ...+.+.+++..|+++....++.||+|||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999999877543222 2356677888999988777889999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|++++|||||++.|+|++|+.++|.+||+.++.+..+..+++++.++..++||||+||+++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999899999999999999999999999999999998763
Q ss_pred CCCCCCcccHHHHHHHHhhcC
Q 003743 739 EPGKMPVITDALLKSIASKAR 759 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~ 759 (799)
...|+.+||..|+.++.
T Consensus 409 ----r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ----RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ----CCccCHHHHHHHHHHHH
Confidence 24699999999998863
No 26
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-37 Score=329.61 Aligned_cols=274 Identities=32% Similarity=0.521 Sum_probs=249.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
.++.|+++.|++.+++.+.+.+.+|...+.+|.... .+.+++||+||||+|||++++|+|.++++.|+.++++.+.++|
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 457899999999999999999999999999998754 4567999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--ccCcEEEEEecCCCCccChh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~~~~vlvi~ttn~~~~ld~a 661 (799)
+|++++.++.+|+-|+..+|+|+||||+|+++.+|.........|+..+++..+++.. ..++|+||||||+|+.+|.+
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea 306 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEA 306 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHH
Confidence 9999999999999999999999999999999999977777778899999999988875 45689999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhc--ccCCC
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILN--NIDSN 738 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~--~~~~~ 738 (799)
++| ||.+++++|+|++++|..+|+..+.+.+.. .+.|++.|++.++||+|+||.++|.+|++.-++.... .....
T Consensus 307 ~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~ 384 (428)
T KOG0740|consen 307 ARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFI 384 (428)
T ss_pred HHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhc
Confidence 999 999999999999999999999998877433 5688999999999999999999999999988777655 23333
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC
Q 003743 739 EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~ 780 (799)
.....+.|+..|+..++..++|+++.....+|.+|...|..+
T Consensus 385 ~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 385 DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 456678899999999999999999999999999999999754
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-36 Score=338.72 Aligned_cols=242 Identities=38% Similarity=0.667 Sum_probs=226.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
.+.|.++.|.++.++.+.+.+. +++.|..|...|-..|+++||+||||||||.+|+|+|.+.+.||+.+++++++..|+
T Consensus 146 ~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 4789999999999999999887 588999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC---CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChh
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~---~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~a 661 (799)
|.....+|++|.+|+.++||||||||||.+...|+.+ .....+..++++|.+||++....+|+|+++||+|+-+|||
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~A 304 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPA 304 (596)
T ss_pred CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHh
Confidence 9999999999999999999999999999999988644 3344557999999999999988999999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG 741 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~ 741 (799)
|+||||||+.|.++.|+...|.+|++.+++..++..++++..+|+.+.||+|+|+.+++++|+..|+++..
T Consensus 305 LlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~--------- 375 (596)
T COG0465 305 LLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK--------- 375 (596)
T ss_pred hcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCCcccHHHHHHHHhhc
Q 003743 742 KMPVITDALLKSIASKA 758 (799)
Q Consensus 742 ~~~~it~e~l~~a~~~~ 758 (799)
..|++.|+.+|..++
T Consensus 376 --~~i~~~~i~ea~drv 390 (596)
T COG0465 376 --KEITMRDIEEAIDRV 390 (596)
T ss_pred --eeEeccchHHHHHHH
Confidence 368888888888754
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-36 Score=332.20 Aligned_cols=251 Identities=20% Similarity=0.299 Sum_probs=223.2
Q ss_pred CCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEE
Q 003743 212 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF 291 (799)
Q Consensus 212 ~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~ 291 (799)
...+..|++|.|++.+|.++.+.+..-+. .+.-|.++|+.+|++||||||||||||++|+++|++.+ .+|+.
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~--~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~------~nFls 498 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLK--HPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG------MNFLS 498 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhh--chHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc------CCeee
Confidence 34477899999999999999988877776 78999999999999999999999999999999999999 89999
Q ss_pred EecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccC
Q 003743 292 VCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 371 (799)
Q Consensus 292 v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~ 371 (799)
+.+.++...+.|+.+..++++|..|+...|+|||+||||++..+|+...+ ....+++++|++.||++...+
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~e~~k----- 569 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGLEALK----- 569 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHcccccccC-----
Confidence 99999999999999999999999999999999999999999987763322 445689999999999987654
Q ss_pred CCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHH
Q 003743 372 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 451 (799)
Q Consensus 372 ~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~ 451 (799)
+|+||++||+|+.||+||+|||||+..|++|+|+.+.|.+||+.++++..+.- +..++.|++.|+||||+||..+|+
T Consensus 570 --~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~-~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 570 --NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE-DVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred --cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc-cccHHHHHHHhccCChHHHHHHHH
Confidence 49999999999999999999999999999999999999999999988765542 235999999999999999999999
Q ss_pred HHHHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 452 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 452 ~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
+|+..|+++.+. ...+..+||.+++....++
T Consensus 647 ~A~~~a~~e~i~---------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 647 EAALLALRESIE---------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHHHHhcc---------cccccHHHHHHHHHhhccc
Confidence 999999988552 3567789999998876654
No 29
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.5e-34 Score=331.95 Aligned_cols=244 Identities=39% Similarity=0.667 Sum_probs=223.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++++++.+.+.+.. +.+++.+...+..+++++||+||||||||++|+++|++++.+++.++++++.+.|
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 457899999999999999998875 7889999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
.|.++..++.+|+.|+...||||||||+|.++.+++... .....+++++|+.+||++....+++||+|||+|+.+||
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 999999999999999999999999999999998876532 23456889999999999988889999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 740 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 740 (799)
+++|||||++.|+|++|+.++|.+||+.+++..++..++++..++..+.||||+||+++|++|+..|+++.
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--------- 279 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--------- 279 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999998888888999999999999999999999999988776542
Q ss_pred CCCCcccHHHHHHHHhhcC
Q 003743 741 GKMPVITDALLKSIASKAR 759 (799)
Q Consensus 741 ~~~~~it~e~l~~a~~~~~ 759 (799)
...|+.+|+..|+..+.
T Consensus 280 --~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 --KTEITMNDIEEAIDRVI 296 (495)
T ss_pred --CCCCCHHHHHHHHHHHh
Confidence 24799999999998763
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=6.3e-34 Score=319.39 Aligned_cols=247 Identities=37% Similarity=0.628 Sum_probs=212.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe----------EEE
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FIS 573 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------~i~ 573 (799)
+...|++|+|++..++.+++.+.+|+.++++|...++.+++++|||||||||||++|+++|+.++.+ |+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999988543 677
Q ss_pred EeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCC-CCchhhHHHHHHHhhccCccccCcEEE
Q 003743 574 VKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFV 648 (799)
Q Consensus 574 i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~-~~~~~~r~~~~ll~~ld~~~~~~~vlv 648 (799)
++.+++.++|+|+++..++.+|..|+. +.|+||||||+|.++++|+.+ ......+++++|+.+||++...++++|
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV 336 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV 336 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE
Confidence 888899999999999999999998876 379999999999999887653 334556889999999999998889999
Q ss_pred EEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc-CCCCC---------cccHHHHHH------------
Q 003743 649 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK-LPLAD---------DVDLEAIAH------------ 706 (799)
Q Consensus 649 i~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~-~~~~~---------~~~~~~la~------------ 706 (799)
|+|||+++.||||++||||||..|+|++|+.++|.+||+.++.. .++.. ..+...+..
T Consensus 337 I~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~ 416 (512)
T TIGR03689 337 IGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEE 416 (512)
T ss_pred EeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999988764 34311 112222221
Q ss_pred -----------------HCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 707 -----------------MTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 707 -----------------~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
.++.+||++|+++|..|...|+++.+.. ....|+.+|+..|+..
T Consensus 417 ~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-------~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 417 NRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-------GQVGLRIEHLLAAVLD 477 (512)
T ss_pred cceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-------CCcCcCHHHHHHHHHH
Confidence 2567899999999999999999998742 2347999999998864
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.6e-33 Score=311.86 Aligned_cols=245 Identities=45% Similarity=0.702 Sum_probs=222.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
.+...|++++|++++++.+.+.+..++.+++.|...|..++.++||+||||||||++|+++|+.++.+++.+.++++...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCccC
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 659 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld 659 (799)
|.|.....++.+|+.++...|+||||||+|.+...+.....+ ...+.+.+++.+++++...+++.||+|||+++.+|
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 999999999999999999999999999999998776543322 23456777888888877777899999999999999
Q ss_pred hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 003743 660 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 739 (799)
Q Consensus 660 ~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 739 (799)
++++|||||++.++|++|+.++|.+||+.++....+..+++++.++..++||+|+||+++|++|++.|+++.
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~-------- 347 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE-------- 347 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999998888888999999999999999999999999999998762
Q ss_pred CCCCCcccHHHHHHHHhhc
Q 003743 740 PGKMPVITDALLKSIASKA 758 (799)
Q Consensus 740 ~~~~~~it~e~l~~a~~~~ 758 (799)
...|+.+||..|+..+
T Consensus 348 ---~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---CCccCHHHHHHHHHHh
Confidence 2479999999998764
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-34 Score=291.36 Aligned_cols=243 Identities=36% Similarity=0.633 Sum_probs=220.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
+..|+.++|+-.+...+++.++.|+..|++|...++.+|.+++||||||||||.+|+++|..++++|+.+..+++.++|+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCC---chhhHHHHHHHhhccCccccCcEEEEEecCCCCccChh
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~a 661 (799)
|++.+.|++.|..|+...|||||+||||...+++..... ....+.+-+|+.+|+++...++|-+|+|||+|+.|||+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 999999999999999999999999999999988743222 23346677788889999999999999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG 741 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~ 741 (799)
|+||||+++.++.|.|+...|..|++.+...+.....+|.+++.+.++||.|+|+++.|++|.+-|+....
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~--------- 358 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER--------- 358 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh---------
Confidence 99999999999999999999999999998888888899999999999999999999999999987765532
Q ss_pred CCCcccHHHHHHHHhhc
Q 003743 742 KMPVITDALLKSIASKA 758 (799)
Q Consensus 742 ~~~~it~e~l~~a~~~~ 758 (799)
.-+-.|++..++.++
T Consensus 359 --~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 359 --DEVLHEDFMKLVRKQ 373 (388)
T ss_pred --HHHhHHHHHHHHHHH
Confidence 246677777776654
No 33
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.8e-32 Score=326.01 Aligned_cols=455 Identities=17% Similarity=0.245 Sum_probs=302.6
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~ 290 (799)
+..++.++|.+..++++++ .|.. ....++||+||||||||++++++|+.+.... .....++
T Consensus 178 ~~~l~~~igr~~ei~~~~~----~L~~-----------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQ----VLCR-----------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred cCCCCcccCcHHHHHHHHH----HHhc-----------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 4567788999887776554 3321 2345799999999999999999999984321 1136678
Q ss_pred EEeccccc--ccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCC
Q 003743 291 FVCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 368 (799)
Q Consensus 291 ~v~~s~l~--~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~ 368 (799)
.++++.+. ..+.|.+...++.++..+....++||||||+|.+.+.+...++ .. ...+.|...+..
T Consensus 243 ~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---~~---~~~~~L~~~l~~------- 309 (731)
T TIGR02639 243 SLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---SM---DASNLLKPALSS------- 309 (731)
T ss_pred EecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc---cH---HHHHHHHHHHhC-------
Confidence 88887776 3456888899999999987777899999999999864332221 11 123344444331
Q ss_pred ccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHHhhcC
Q 003743 369 SCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCD 439 (799)
Q Consensus 369 ~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----~~~~~~~~~l~~la~~~~ 439 (799)
+.+.+|++||..+ ..|++|.| ||. .|.++.|+.+++.+|++..... +.+.++++++..++..+.
T Consensus 310 ----g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 310 ----GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSA 382 (731)
T ss_pred ----CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhh
Confidence 2489999999743 46999999 997 7999999999999999966543 456789999999999887
Q ss_pred CCChh-----hHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccccccccccccc----cccCCCCCCCCC
Q 003743 440 GYDAY-----DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITK----TSAEGGRSGWDD 510 (799)
Q Consensus 440 g~s~~-----dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~----~~~~~~~~~~~~ 510 (799)
.|-+. ---.++++|+... +..+.. .....++.+|+..++............. ........-...
T Consensus 383 ryi~~r~~P~kai~lld~a~a~~--~~~~~~-----~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~ 455 (731)
T TIGR02639 383 RYINDRFLPDKAIDVIDEAGASF--RLRPKA-----KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAK 455 (731)
T ss_pred cccccccCCHHHHHHHHHhhhhh--hcCccc-----ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcc
Confidence 76433 2245566665322 211110 1234577888877766543111101000 000000112346
Q ss_pred CCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh---------
Q 003743 511 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN--------- 581 (799)
Q Consensus 511 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~--------- 581 (799)
+.|++++++.+...+...... -..+-+|..++||+||||||||++|+++|..++.+++.++++++..
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g----~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAG----LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcC----CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 789999888887776531000 0011134456899999999999999999999999999999988643
Q ss_pred ---hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---------ccCcEEEE
Q 003743 582 ---KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVF 649 (799)
Q Consensus 582 ---~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~---------~~~~vlvi 649 (799)
.|+|..+ ...+.+..+...++||||||+|++. ..+.+.|++.||.-. ...+++||
T Consensus 532 ~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 532 APPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred CCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 1333322 2233444456677899999999883 457888888887532 13468888
Q ss_pred EecCCCC-------------------------ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC-------CCCC
Q 003743 650 AATSRPD-------------------------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-------PLAD 697 (799)
Q Consensus 650 ~ttn~~~-------------------------~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~ 697 (799)
+|||... .+.|.|+. |++.++.|.+.+.++..+|++..+... ++.-
T Consensus 599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l 676 (731)
T TIGR02639 599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKL 676 (731)
T ss_pred ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 9998642 14566776 999999999999999999998776532 2221
Q ss_pred ccc---HHHHHHH--CCCCcHHHHHHHHHHHHHHHHHH
Q 003743 698 DVD---LEAIAHM--TEGFSGADLQALLSDAQLSAVHE 730 (799)
Q Consensus 698 ~~~---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~ 730 (799)
.++ .+.|+.. ...+-++.|+.+++......+..
T Consensus 677 ~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 677 ELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 222 3445543 23355677777776666555443
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=304.44 Aligned_cols=266 Identities=35% Similarity=0.576 Sum_probs=227.5
Q ss_pred CCCCC--CCChHHHHH-HHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-eEEEEeccchhh
Q 003743 506 SGWDD--VGGLTDIQN-AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-RFISVKGPELLN 581 (799)
Q Consensus 506 ~~~~~--i~g~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~-~~i~i~~~~l~~ 581 (799)
-.|++ |+|++.--. ..+..+....-.|+...++|...-+|+|||||||||||.+||.+..++++ +--.+|++++++
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~ 295 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN 295 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH
Confidence 44554 567765443 34666666677789999999999999999999999999999999999975 456789999999
Q ss_pred hhhcccHHHHHHHHHHhHh--------cCCeEEEEcccccccCCCCC--CCCchhhHHHHHHHhhccCccccCcEEEEEe
Q 003743 582 KYIGASEQAVRDIFSKATA--------AAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~--------~~p~ILfiDEid~l~~~r~~--~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
+|+|++|++++.+|.+|.. ..--||+|||||+++..|++ +.+++.+.++|+||.-|||++..++++||+-
T Consensus 296 KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGM 375 (744)
T KOG0741|consen 296 KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGM 375 (744)
T ss_pred HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEec
Confidence 9999999999999999843 12259999999999999986 4578999999999999999999999999999
Q ss_pred cCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC----CCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 003743 652 TSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLADDVDLEAIAHMTEGFSGADLQALLSDAQLSA 727 (799)
Q Consensus 652 tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a 727 (799)
||+.++||+||+|||||...+++.+||+..|.+|++.+.+.+ .++.++|++.||..|.+|||++|..+++.|...|
T Consensus 376 TNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A 455 (744)
T KOG0741|consen 376 TNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFA 455 (744)
T ss_pred cCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998776544 4678999999999999999999999999999999
Q ss_pred HHHHhcccCCC----CCCCCCcccHHHHHHHHhhcCCC--CCHHHHHHHH
Q 003743 728 VHEILNNIDSN----EPGKMPVITDALLKSIASKARPS--VSEAEKLRLY 771 (799)
Q Consensus 728 ~~~~~~~~~~~----~~~~~~~it~e~l~~a~~~~~~~--~~~~~~~~~~ 771 (799)
+.|........ .....-.||.+||..|+..++|. +++++.+.+.
T Consensus 456 ~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 456 MNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 99988655221 22345579999999999999995 5666665543
No 35
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5e-33 Score=322.40 Aligned_cols=242 Identities=38% Similarity=0.658 Sum_probs=220.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
...|++++|++++++.+.+.+.. ++.++.|...+...++++||+||||||||++|+++|.+++.+++.++++++...+.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 36799999999999999998765 67888888888888999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC---CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChh
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~---~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~a 661 (799)
|.....++.+|..|+...||||||||+|.++..|+.+ .......++++|+.+||++....+++||+|||+|+.+|++
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhh
Confidence 9988999999999999999999999999998777543 2334467899999999998888899999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG 741 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~ 741 (799)
++|||||++.++|++|+.++|.+||+.+++...+..++++..++..+.||+|+||+++|++|+..|.++.
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~---------- 407 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK---------- 407 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC----------
Confidence 9999999999999999999999999999998888888999999999999999999999999988876552
Q ss_pred CCCcccHHHHHHHHhhc
Q 003743 742 KMPVITDALLKSIASKA 758 (799)
Q Consensus 742 ~~~~it~e~l~~a~~~~ 758 (799)
...||.+||.+|+..+
T Consensus 408 -~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -KATITMKEIDTAIDRV 423 (638)
T ss_pred -CCCcCHHHHHHHHHHH
Confidence 2479999999999875
No 36
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-31 Score=313.47 Aligned_cols=457 Identities=15% Similarity=0.210 Sum_probs=296.6
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEEE
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVF 291 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~~ 291 (799)
-.++.++|.+..+.++++.+.. ..+.++||+||||||||++|+++|..+-... .....++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r---------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR---------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc---------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 3456789999888877764322 1245689999999999999999998763221 11234445
Q ss_pred Eeccccc--ccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 003743 292 VCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 369 (799)
Q Consensus 292 v~~s~l~--~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~ 369 (799)
++...+. ..+.|.+...++.++..+....++||||||||.+++.+....+ .. .+.+.|...+..
T Consensus 248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g---~~---d~~nlLkp~L~~-------- 313 (758)
T PRK11034 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---QV---DAANLIKPLLSS-------- 313 (758)
T ss_pred ccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc---HH---HHHHHHHHHHhC--------
Confidence 5544443 2345778888999998887778899999999999854322111 11 233444443321
Q ss_pred cCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhh----hcccCCCHHHHHHHHhhcCC
Q 003743 370 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDG 440 (799)
Q Consensus 370 ~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~----~~~~~~~~~~l~~la~~~~g 440 (799)
+.+.+|++||..+ ..|++|.| ||. .|.++.|+.+++..|++.+.. .+++.++++++..++..+..
T Consensus 314 ---g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r 387 (758)
T PRK11034 314 ---GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_pred ---CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence 2489999999864 46999999 997 899999999999999996543 45678899999888877655
Q ss_pred C-----ChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccccccccccccccc----cCCCCCCCCCC
Q 003743 441 Y-----DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS----AEGGRSGWDDV 511 (799)
Q Consensus 441 ~-----s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~----~~~~~~~~~~i 511 (799)
| -|.....++++|+... |..+.. .....++.+|+...+..........+.... ......--..+
T Consensus 388 yi~~r~lPdKaidlldea~a~~--~~~~~~-----~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~V 460 (758)
T PRK11034 388 YINDRHLPDKAIDVIDEAGARA--RLMPVS-----KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLV 460 (758)
T ss_pred cccCccChHHHHHHHHHHHHhh--ccCccc-----ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceE
Confidence 4 3445667788877432 322211 112346667776665544321111110000 00001112457
Q ss_pred CChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh-----hhhcc
Q 003743 512 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-----KYIGA 586 (799)
Q Consensus 512 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~-----~~~g~ 586 (799)
.|++++++.+...+...... + ...-+|..++||+||||||||++|+++|..++.+++.++++++.. .++|.
T Consensus 461 iGQ~~ai~~l~~~i~~~~~g--l--~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 461 FGQDKAIEALTEAIKMSRAG--L--GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred eCcHHHHHHHHHHHHHHhcc--c--cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 89999999998887642110 0 001234457999999999999999999999999999999988642 23332
Q ss_pred cHH-----HHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---------ccCcEEEEEec
Q 003743 587 SEQ-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAAT 652 (799)
Q Consensus 587 se~-----~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~---------~~~~vlvi~tt 652 (799)
... .-..+.+..+..+.+||||||||++. ..+++.|++.||.-. ...+++||+||
T Consensus 537 ~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 111 01122233345566899999999983 458888988887421 12468899999
Q ss_pred CCC-------------------------CccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc-------CCCCCccc
Q 003743 653 SRP-------------------------DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK-------LPLADDVD 700 (799)
Q Consensus 653 n~~-------------------------~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~~~~~ 700 (799)
|.- ..+.|.|+. |+|.++.|++.+.++..+|+...+.. .++.-.++
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~ 683 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVS 683 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceEC
Confidence 932 125577777 99999999999999999999765432 23433333
Q ss_pred H---HHHHHHC--CCCcHHHHHHHHHHHHHHHHHHH
Q 003743 701 L---EAIAHMT--EGFSGADLQALLSDAQLSAVHEI 731 (799)
Q Consensus 701 ~---~~la~~~--~g~sg~di~~~~~~a~~~a~~~~ 731 (799)
. +.|+... ..+-++.|+.++..-....+...
T Consensus 684 ~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 684 QEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 3 3444321 23446777777766666555443
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-33 Score=297.64 Aligned_cols=244 Identities=22% Similarity=0.295 Sum_probs=208.2
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...+|+++-|.++++.++.+- .++|. .|.-|.++|-..|++|||+||||||||.||||+|++.+ .+|.+..
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEi-VefLk--dP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~------VPFF~~s 369 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEI-VEFLK--DPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG------VPFFYAS 369 (752)
T ss_pred cccccccccChHHHHHHHHHH-HHHhc--CcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC------CCeEecc
Confidence 366799999999999887664 45565 77889999999999999999999999999999999999 8999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.+++..-..|.-..+++++|..|+...||||||||||++.+.|...... .....+++|+..||++...+
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~----y~kqTlNQLLvEmDGF~qNe------- 438 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH----YAKQTLNQLLVEMDGFKQNE------- 438 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH----HHHHHHHHHHHHhcCcCcCC-------
Confidence 9999888888889999999999999999999999999998765543221 44577888999999988654
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
.|+||++||.|+.||+||.||||||++|.+|.|+...|.+||..|+.+..+. .+..+.-||+-+.||+|+||.+++++|
T Consensus 439 GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 439 GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999875443 133377889999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
+..|... ....+++.+++.+-+++.
T Consensus 518 AlkAa~d-----------ga~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 518 ALKAAVD-----------GAEMVTMKHLEFAKDRIL 542 (752)
T ss_pred HHHHHhc-----------CcccccHHHHhhhhhhee
Confidence 8777543 235677888877766553
No 38
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-33 Score=322.44 Aligned_cols=259 Identities=35% Similarity=0.580 Sum_probs=230.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccch
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 579 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l 579 (799)
...|++++|++.++..|++.+..|+.+|+.|..+++.|++++||+||||||||++|+++|..+ +..|+--++++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 478999999999999999999999999999999999999999999999999999999999988 467888889999
Q ss_pred hhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccC
Q 003743 580 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 659 (799)
Q Consensus 580 ~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld 659 (799)
+++|+|+.++.++.+|+.|+..+|+|||+||||.|++.|..-.......++.+||..|||+...+.|+||+|||+|+.+|
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~d 420 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAID 420 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccc
Confidence 99999999999999999999999999999999999999977777777889999999999999999999999999999999
Q ss_pred hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 660 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 660 ~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
||++|||||++.++|++|+.+.|.+|+..+.++..-. ...-...||..+.||.|+||+.+|.+|++.++++...-+...
T Consensus 421 paLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s 500 (1080)
T KOG0732|consen 421 PALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSS 500 (1080)
T ss_pred hhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecc
Confidence 9999999999999999999999999999988877522 344578899999999999999999999999998765332221
Q ss_pred -----CCCCCCcccHHHHHHHHhhcCCCCC
Q 003743 739 -----EPGKMPVITDALLKSIASKARPSVS 763 (799)
Q Consensus 739 -----~~~~~~~it~e~l~~a~~~~~~~~~ 763 (799)
-......+...||..|+....|+..
T Consensus 501 ~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 501 SDKLLIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred cccccccchhhhhhhHhhhhhhhccCCCCC
Confidence 1122334788888888887766443
No 39
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-32 Score=319.47 Aligned_cols=446 Identities=20% Similarity=0.258 Sum_probs=317.7
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|++++|+++.+..+.+-+...|- .++.|..+++.+|+++||+||||||||+.|+++|..+...... ..+..-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLl--yPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkg 337 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLL--YPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKG 337 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhh--hhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcC
Confidence 56699999999999999987754444 8899999999999999999999999999999999998754433 22333345
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
++....+.|+.+..++.+|.+|....|+|+|+||||.|++.|+... ......+...|+.+||++.+.. +
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq----Eqih~SIvSTLLaLmdGldsRg-------q 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ----EQIHASIVSTLLALMDGLDSRG-------Q 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH----HHhhhhHHHHHHHhccCCCCCC-------c
Confidence 6666777888899999999999999999999999999998765422 1223367888999999987654 5
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
|++|++||+++.+||+|+|||||++.++|+.|+.+.|.+|+..+-..+.-.+....+..+++.+.||-++||+.+|..|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred HHHhcccccC-----CCcccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhh---
Q 003743 455 HAAVGRYLHS-----DSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE--- 526 (799)
Q Consensus 455 ~~a~~r~~~~-----~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~--- 526 (799)
..++++-.+. ...........+...||..|+.+..|+..+........-.....- +.+.......++..+.
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~-ll~~~~~~~~iq~~~~va~ 565 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKP-LLPFQDALEDIQGLMDVAS 565 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceec-ccchHHHHHHhhcchhHHh
Confidence 9998875532 112222233447788999999998888766532221111111111 2222222222222211
Q ss_pred ----------ccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-CCeEEEEeccchhhhh-hcccHHHHHHH
Q 003743 527 ----------LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNKY-IGASEQAVRDI 594 (799)
Q Consensus 527 ----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-~~~~i~i~~~~l~~~~-~g~se~~i~~~ 594 (799)
+..+..+..-...+-....+++.|..|.|-+.+..|+-+.+ +.++.....+.++... .+..+..+..+
T Consensus 566 ~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i 645 (1080)
T KOG0732|consen 566 SMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHI 645 (1080)
T ss_pred hhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHH
Confidence 10000000001122234568899999999999999998876 6677777766666544 45567889999
Q ss_pred HHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 595 FSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 595 f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
|.+|+...||||||-++|.+.... ...+...|+..++.......+..+-+-+.-+.-.+ ..+..+
T Consensus 646 ~~eaR~~~psi~~ip~~d~w~~~~-------p~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~--------~~~~t~ 710 (1080)
T KOG0732|consen 646 FMEARKTTPSIVFIPNVDEWARVI-------PVSFLEEFLSSLDEKALSTPILELHTWDTSFESVN--------KSVVTL 710 (1080)
T ss_pred HHHHhccCCceeeccchhhhhhcC-------cchhhhcchhcchhhhhccchhhhccccccccccC--------cccccc
Confidence 999999999999999999986543 33444455555554333344444332221111000 023345
Q ss_pred CCCCHHHHHHHHHHHH
Q 003743 675 DFPSPRERLDILKVIS 690 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~ 690 (799)
..|..+.+...++..+
T Consensus 711 ~~p~~~s~~~ff~r~I 726 (1080)
T KOG0732|consen 711 SKPSAESTGAFFKRLI 726 (1080)
T ss_pred ccchhhhhHHHHHHHH
Confidence 5667776666665443
No 40
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=286.26 Aligned_cols=262 Identities=21% Similarity=0.269 Sum_probs=217.9
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
....+++|.|++++++-+.+.+..-+- -|++|...-.|+ ++||++||||||||+||+|+|.+++ ..|..|+
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~--mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~------tTFFNVS 277 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIW--MPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECG------TTFFNVS 277 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhh--hHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhc------CeEEEec
Confidence 456789999999999988886643333 667777655555 5699999999999999999999999 7888999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.+.+...+.|+.++.++-+|..|+...|++|||||||.|+++|+ ++..+.+..++.+.|+-.||++....++ ..
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG---~s~EHEaSRRvKsELLvQmDG~~~t~e~---~k 351 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRG---GSSEHEASRRVKSELLVQMDGVQGTLEN---SK 351 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCC---CccchhHHHHHHHHHHHHhhcccccccc---ce
Confidence 99999999999999999999999999999999999999996554 4456677778999999999998865442 23
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
.|+|.++||.|++||+||+| ||..+|++|.|+.+.|..+++..++..... ++-.++.+++.++||+|+||.++|+.|
T Consensus 352 ~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 352 VVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred eEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 48999999999999999999 999999999999999999999888764432 344489999999999999999999999
Q ss_pred HHHHhcccccCCC------cccccccccceecccchhccccccccc
Q 003743 454 VHAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAM 493 (799)
Q Consensus 454 ~~~a~~r~~~~~~------~~~~~~~~~l~~edf~~al~~~~p~~~ 493 (799)
.+.+++|.+..-. ......+.+++.+||..|+.++.|+..
T Consensus 429 sm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 429 SMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 9999998763211 111112356889999999998877654
No 41
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-32 Score=303.37 Aligned_cols=266 Identities=22% Similarity=0.299 Sum_probs=222.0
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEE
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 290 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~ 290 (799)
++-.+..|++|+|++++|..|.+-|..-|. .+++|.. |+..+.+||||||||||||.+|+|+|-++. ..|.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~--hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs------L~Fl 734 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLK--HPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFL 734 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCccc--Chhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce------eeEE
Confidence 444577899999999999999998876665 5666654 777788999999999999999999999998 8889
Q ss_pred EEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 003743 291 FVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 370 (799)
Q Consensus 291 ~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~ 370 (799)
.|...++...+.|+.++.++++|+.|+...|||||+||+|.++|+|+..++++.-+. ++.++|+..+|++....
T Consensus 735 SVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMD--RVVSQLLAELDgls~~~---- 808 (953)
T KOG0736|consen 735 SVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMD--RVVSQLLAELDGLSDSS---- 808 (953)
T ss_pred eecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHH--HHHHHHHHHhhcccCCC----
Confidence 999999999999999999999999999999999999999999999888777766554 78999999999987532
Q ss_pred CCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCH-HHHHHHHHHHhhhcccCCCHHHHHHHHhhcC-CCChhhHHH
Q 003743 371 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSLECSDEILLDVASKCD-GYDAYDLEI 448 (799)
Q Consensus 371 ~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~l~~la~~~~-g~s~~dl~~ 448 (799)
..+|+||++||+|+.|||+|+||||||.-+++++++. +.+..+++...++..+. .+..+..+|+.|+ .|+|+|+-.
T Consensus 809 -s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYs 886 (953)
T KOG0736|consen 809 -SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYS 886 (953)
T ss_pred -CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHH
Confidence 2369999999999999999999999999999988865 56778888776665443 2223888999885 689999999
Q ss_pred HHHHHHHHHhcccccCCCc------ccccccccceecccchhccccccccc
Q 003743 449 LVDRTVHAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAM 493 (799)
Q Consensus 449 lv~~A~~~a~~r~~~~~~~------~~~~~~~~l~~edf~~al~~~~p~~~ 493 (799)
+|..|...|++|.+..-.. ........++++||.++++++.|+..
T Consensus 887 LCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 887 LCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 9999999999987632111 12223466889999999999988753
No 42
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-32 Score=265.50 Aligned_cols=296 Identities=20% Similarity=0.283 Sum_probs=232.2
Q ss_pred EEEecccccccCCCCCceeeeeeccccCCCCHHHHHHHHhcCCCCCceEEEEeeecCccCCCCCccccccCchhHHHHHH
Q 003743 153 CVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVI 232 (799)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~i~ 232 (799)
|+..++.+-.+.+---+..++++... =.+++.+. .+....|++.- ...-.+.+++-+.|++.++++|.
T Consensus 93 yvvdv~k~i~i~~~~~~~rVaLR~ds------Y~lhkiLp-nKvDpLVsLMm-----VeKvPDStYeMiGgLd~QIkeIk 160 (404)
T KOG0728|consen 93 YVVDVDKNIDISDVTPSSRVALRNDS------YTLHKILP-NKVDPLVSLMM-----VEKVPDSTYEMIGGLDKQIKEIK 160 (404)
T ss_pred EEEeccCCCcHhhcCCcceEEEeccc------hHHHHhcc-cccchhhHHHh-----hhhCCccHHHHhccHHHHHHHHH
Confidence 44555444455544455555555432 23444443 12223333211 12334677889999999999999
Q ss_pred HHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHH
Q 003743 233 NRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNF 312 (799)
Q Consensus 233 ~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~ 312 (799)
+.+..-+. .|++|..+|+..|.++|||||||||||.+|+++|.... +.|+.++.+++...+.|+....++++
T Consensus 161 EVIeLPvK--HPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsgselvqk~igegsrmvrel 232 (404)
T KOG0728|consen 161 EVIELPVK--HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSGSELVQKYIGEGSRMVREL 232 (404)
T ss_pred HHHhcccc--CHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEechHHHHHHHhhhhHHHHHHH
Confidence 98765555 89999999999999999999999999999999999988 89999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhh
Q 003743 313 ISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLT 392 (799)
Q Consensus 313 ~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~ 392 (799)
|-.|+++.|+|||+||||++.+.|.+..+.+ +..+++..-.|++.+|++.... ++-+|++||+.+-+||||+
T Consensus 233 fvmarehapsiifmdeidsigs~r~e~~~gg-dsevqrtmlellnqldgfeatk-------nikvimatnridild~all 304 (404)
T KOG0728|consen 233 FVMAREHAPSIIFMDEIDSIGSSRVESGSGG-DSEVQRTMLELLNQLDGFEATK-------NIKVIMATNRIDILDPALL 304 (404)
T ss_pred HHHHHhcCCceEeeecccccccccccCCCCc-cHHHHHHHHHHHHhcccccccc-------ceEEEEeccccccccHhhc
Confidence 9999999999999999999998777655444 4444455555667778776543 5999999999999999999
Q ss_pred ccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccc
Q 003743 393 SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHI 472 (799)
Q Consensus 393 r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~ 472 (799)
||||+++.|+||+|+.+.|.+|++.+-++.++.-. -.++.+++...|.+++++..+|.+|.+.|++. .
T Consensus 305 rpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~kiaekm~gasgaevk~vcteagm~alre-----------r 372 (404)
T KOG0728|consen 305 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKIAEKMPGASGAEVKGVCTEAGMYALRE-----------R 372 (404)
T ss_pred CCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHHHHhCCCCccchhhhhhhhhhHHHHHH-----------h
Confidence 99999999999999999999999987766544211 12889999999999999999999999999865 2
Q ss_pred cccceecccchhcccc
Q 003743 473 KPTLVRDDFSQAMHEF 488 (799)
Q Consensus 473 ~~~l~~edf~~al~~~ 488 (799)
+..++.+||+-|..++
T Consensus 373 rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 RVHVTQEDFEMAVAKV 388 (404)
T ss_pred hccccHHHHHHHHHHH
Confidence 3668899999876654
No 43
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4.4e-32 Score=327.42 Aligned_cols=211 Identities=18% Similarity=0.251 Sum_probs=178.5
Q ss_pred ChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh----------hc---------------
Q 003743 531 FPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY----------IG--------------- 585 (799)
Q Consensus 531 ~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~----------~g--------------- 585 (799)
.+....+.|..+++|+||+||||||||.+|+|+|.++++||+.++++++++.+ +|
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 34455678889999999999999999999999999999999999999998654 12
Q ss_pred ----------------ccHH--HHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---ccC
Q 003743 586 ----------------ASEQ--AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---VLT 644 (799)
Q Consensus 586 ----------------~se~--~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~---~~~ 644 (799)
..+. .++.+|+.|+..+||||||||||.++.+.. ....+++|+.+|++.. ...
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCC
Confidence 2222 388999999999999999999999986521 1124789999999763 356
Q ss_pred cEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHH--HccCCCCC-cccHHHHHHHCCCCcHHHHHHHHH
Q 003743 645 GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI--SRKLPLAD-DVDLEAIAHMTEGFSGADLQALLS 721 (799)
Q Consensus 645 ~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~--~~~~~~~~-~~~~~~la~~~~g~sg~di~~~~~ 721 (799)
+|+||||||+|+.||||++||||||+.|+++.|+..+|.+++... .++..+.. .++++.+|..|.||||+||.++|+
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999998764 34555554 368999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 722 DAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 722 ~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
+|+..|+++.. ..|+.++++.|+..+
T Consensus 1852 EAaliAirq~k-----------s~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1852 EALSISITQKK-----------SIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHcCC-----------CccCHHHHHHHHHHH
Confidence 99999988742 468999999998754
No 44
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4e-32 Score=266.70 Aligned_cols=247 Identities=20% Similarity=0.335 Sum_probs=213.2
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...++.++.|++-++.+|++.+..-|. ...+|...|+.+|+++|||||||||||+|++++|+... +.|+.+.
T Consensus 150 pdvsy~diggld~qkqeireavelplt--~~~ly~qigidpprgvllygppg~gktml~kava~~t~------a~firvv 221 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLT--HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT------AAFIRVV 221 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccch--HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc------hheeeec
Confidence 356789999999999999998876665 67899999999999999999999999999999999887 8899999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.+++...+.|+....++++|..+++..|+|+||||+|+++..|-+.. .+....+++++-.|++.||++....
T Consensus 222 gsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaq-tgadrevqril~ellnqmdgfdq~~------- 293 (408)
T KOG0727|consen 222 GSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQMDGFDQTT------- 293 (408)
T ss_pred cHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHhccCcCccc-------
Confidence 99999999998889999999999999999999999999997765543 3455666777778888899887654
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+|-+|++||+.+.+||+|+||||++++|+||.|+..+++-+|.....+..+. ++..++.+..+.+..++++|..+|++|
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqea 372 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEA 372 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHH
Confidence 4999999999999999999999999999999999999999999888776554 233488888899999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
.+.|++. ....+...||+++....
T Consensus 373 gm~avr~-----------nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 373 GMLAVRE-----------NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred hHHHHHh-----------cceeeeHHHHHHHHHhh
Confidence 9999865 22456677887766543
No 45
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.98 E-value=1.6e-31 Score=313.74 Aligned_cols=243 Identities=37% Similarity=0.652 Sum_probs=220.2
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhc
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 585 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g 585 (799)
..|.++.|.+..++.+.+.+.. ...++.+...+...++++||+||||||||++++++|.+++.+|+.++++++...|.|
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 5688999999999999998876 456677777777778899999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhh
Q 003743 586 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAAL 662 (799)
Q Consensus 586 ~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al 662 (799)
.....++.+|..|+...||||||||+|.++.+|+.+. .....+++++|+.+||++....+++||+|||+|+.+|+++
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al 307 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL 307 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHH
Confidence 9999999999999999999999999999998876432 2345678999999999998888999999999999999999
Q ss_pred cCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 003743 663 LRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGK 742 (799)
Q Consensus 663 ~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~ 742 (799)
+|||||++.++|++|+.++|.+||+.+++..++..++++..+++.+.||||+||.++|++|+..|+++ +
T Consensus 308 ~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~-----------~ 376 (644)
T PRK10733 308 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG-----------N 376 (644)
T ss_pred hCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----------C
Confidence 99999999999999999999999999999999989999999999999999999999999999988764 2
Q ss_pred CCcccHHHHHHHHhhcCC
Q 003743 743 MPVITDALLKSIASKARP 760 (799)
Q Consensus 743 ~~~it~e~l~~a~~~~~~ 760 (799)
...|+.+|+..|+..+.+
T Consensus 377 ~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred CCcccHHHHHHHHHHHhc
Confidence 357999999999876644
No 46
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=3.6e-31 Score=317.52 Aligned_cols=259 Identities=43% Similarity=0.698 Sum_probs=236.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++.+++.+.+.+..++.+++.+...++.++.++|||||||||||++|+++|++++.+++.++++++.++|
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhc
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 663 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~ 663 (799)
.|.++..++.+|+.|....|+||||||+|.++++++........+++++|+..|+++.....++||++||.++.+|++++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 99999999999999999999999999999999888766666678999999999999888888999999999999999999
Q ss_pred CCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC-----
Q 003743 664 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN----- 738 (799)
Q Consensus 664 r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~----- 738 (799)
|+|||++.+.+++|+.++|.+||+.+.+..++..+.+++.++..++||+|+|+..+|+.|++.++++.+......
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999998888889999999999999999999999999999999876522111
Q ss_pred ---CCCCCCcccHHHHHHHHhhcCCCC
Q 003743 739 ---EPGKMPVITDALLKSIASKARPSV 762 (799)
Q Consensus 739 ---~~~~~~~it~e~l~~a~~~~~~~~ 762 (799)
+......++.+|+..|+..++|+.
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccchhcccccccHHHHHHHHhhccccc
Confidence 112334689999999999888864
No 47
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=1.1e-30 Score=275.22 Aligned_cols=216 Identities=19% Similarity=0.265 Sum_probs=172.1
Q ss_pred CCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHh-----cCCeEEEEcccc
Q 003743 538 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFD 612 (799)
Q Consensus 538 ~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~-----~~p~ILfiDEid 612 (799)
.+++++.+++||||||||||++|+++|++++++++.++++++.++|+|++++.++++|..|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 567889999999999999999999999999999999999999999999999999999999975 579999999999
Q ss_pred cccCCCCCCCCchhhHHH-HHHHhhccCc------------cccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCH
Q 003743 613 SIAPKRGHDNTGVTDRVV-NQFLTELDGV------------EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSP 679 (799)
Q Consensus 613 ~l~~~r~~~~~~~~~r~~-~~ll~~ld~~------------~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~ 679 (799)
+++++++.....+..+++ .+|++.||+. ....+|+||+|||+|+.|||+|+||||||+.+ ..|+.
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 999998765555556665 7999998863 23567999999999999999999999999965 58999
Q ss_pred HHHHHHHHHHHccCCCCCcccHHHHHHHCCC----CcHHHHHHHHHHHHHHHHHHH---------hcccCCCCCCCCCcc
Q 003743 680 RERLDILKVISRKLPLADDVDLEAIAHMTEG----FSGADLQALLSDAQLSAVHEI---------LNNIDSNEPGKMPVI 746 (799)
Q Consensus 680 ~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g----~sg~di~~~~~~a~~~a~~~~---------~~~~~~~~~~~~~~i 746 (799)
++|.+||+.+++..+++ ..++..|+....| |+|+--..+..++....+.+. ++..+..-.-..+..
T Consensus 301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~ 379 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKM 379 (413)
T ss_pred HHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCC
Confidence 99999999999988775 5777888877765 455544555555554444332 221111112244567
Q ss_pred cHHHHHHHHh
Q 003743 747 TDALLKSIAS 756 (799)
Q Consensus 747 t~e~l~~a~~ 756 (799)
|.+.+.++=.
T Consensus 380 t~~~l~~~g~ 389 (413)
T PLN00020 380 TLEKLLEYGN 389 (413)
T ss_pred CHHHHHHHHH
Confidence 7777765543
No 48
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=305.10 Aligned_cols=250 Identities=20% Similarity=0.293 Sum_probs=217.6
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 292 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v 292 (799)
..+..|.++.|.++++++|.+.+.. |. +|+.|.++|...|+++||+||||||||.||+|+|++.+ .+|+.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LK--NP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg------VPF~sv 375 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LK--NPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPFFSV 375 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hc--CHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC------Cceeee
Confidence 3467899999999999999987654 44 78899999999999999999999999999999999999 999999
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 293 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 293 ~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
+.+++.....+.-..+++++|..++...|||+||||||++...|......+........+++|+..||++....
T Consensus 376 SGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~------ 449 (774)
T KOG0731|consen 376 SGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK------ 449 (774)
T ss_pred chHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC------
Confidence 99999887777778899999999999999999999999999766421122334455678899999999987653
Q ss_pred CCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 373 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 373 ~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.|+++++||+++.+|+||+|||||+++|.++.|+..+|.+|++.+++...+..++..+..++..+.||+|+||.++|.+
T Consensus 450 -~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 450 -GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred -cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhH
Confidence 4999999999999999999999999999999999999999999999988887666678889999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
|+..|.++. ...+...||..+++...
T Consensus 529 aa~~a~r~~-----------~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 529 AALLAARKG-----------LREIGTKDLEYAIERVI 554 (774)
T ss_pred HHHHHHHhc-----------cCccchhhHHHHHHHHh
Confidence 998887763 35678888888877543
No 49
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=7.2e-31 Score=289.91 Aligned_cols=248 Identities=21% Similarity=0.334 Sum_probs=207.7
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...+|++|+|++.+++.|.+.+...+. .+.+|...|+++|+++|||||||||||++|+++|+.++ .+++.+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~--~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~ 211 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLT--CPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVV 211 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEe
Confidence 456799999999999999999877776 78899999999999999999999999999999999988 6778888
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++.+...+.+.....++.+|..+....|+||||||+|.++..+.+... +........+..+++.++++... .
T Consensus 212 ~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~-~~d~~~~r~l~~LL~~ld~~~~~-------~ 283 (398)
T PTZ00454 212 GSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT-GADREVQRILLELLNQMDGFDQT-------T 283 (398)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccC-CccHHHHHHHHHHHHHhhccCCC-------C
Confidence 888777777777788999999999999999999999999876543322 22233345556666667765432 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
++.+|+|||+++.+||+++|||||+..|+|+.|+.++|..||+.++.+.++. .+..+..++..++||+++||..+|++|
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEA 362 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988776543 233488999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
.+.|+++. ...++.+||..|+..+.
T Consensus 363 ~~~A~r~~-----------~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 363 GMQAVRKN-----------RYVILPKDFEKGYKTVV 387 (398)
T ss_pred HHHHHHcC-----------CCccCHHHHHHHHHHHH
Confidence 99998662 25688999999887754
No 50
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=268.61 Aligned_cols=247 Identities=20% Similarity=0.347 Sum_probs=208.3
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 292 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v 292 (799)
....++.++.|++.++.+|.+.+..-|. .+++|...|+.+|.+|+|||+||||||.||+|+|+... +.|+.+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLt--hPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS------ATFlRv 250 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLT--HPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS------ATFLRV 250 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCC--CHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc------hhhhhh
Confidence 3456799999999999999998776665 89999999999999999999999999999999999877 778888
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 293 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 293 ~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
-.+++...+.|.-...++++|.-|..+.|+|+||||||++...|-+....+. ...++..-.|++.+|++.+.
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sgge-rEiQrtmLELLNQldGFdsr------- 322 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE-REIQRTMLELLNQLDGFDSR------- 322 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccH-HHHHHHHHHHHHhccCcccc-------
Confidence 8899999888888899999999999999999999999999987766543333 33334444566667777654
Q ss_pred CCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH-HHHHHhhcCCCChhhHHHHHH
Q 003743 373 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLDVASKCDGYDAYDLEILVD 451 (799)
Q Consensus 373 ~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv~ 451 (799)
++|-||++||..+.+||+|.||||+++.|+|+.|+...++.||..+..+..+ .+++ ++.+...-+.++++||+.+|.
T Consensus 323 gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl--~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL--AEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccch--hccccHHHHhhcccccccccHHHHHH
Confidence 4699999999999999999999999999999999999999999876655433 3443 788888888999999999999
Q ss_pred HHHHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 452 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 452 ~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
+|...|++.. +..++.+||.++...+
T Consensus 401 EaGllAlRer-----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 401 EAGLLALRER-----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred HHhHHHHHHH-----------HhhccHHHHHHHHHHH
Confidence 9998887652 2568899999876654
No 51
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.9e-30 Score=289.70 Aligned_cols=243 Identities=21% Similarity=0.292 Sum_probs=202.8
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|++|+|++..|+.+.+....+. .....+|+++|+++|||||||||||++|+++|++++ .+++.+++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~-----~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~------~~~~~l~~ 292 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS-----KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ------LPLLRLDV 292 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh-----HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEEEh
Confidence 4568999999999888877654432 234567999999999999999999999999999998 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+.+...+.|.....++.+|..+....||||||||||.++..+... +.......++..++.+++... .+
T Consensus 293 ~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~~~---------~~ 360 (489)
T CHL00195 293 GKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSEKK---------SP 360 (489)
T ss_pred HHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhcCC---------Cc
Confidence 999988889999999999999998999999999999998543221 122333466777777776422 25
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccC-CCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~-~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
++||+|||+++.+|++++|+|||+..|+++.|+.++|.+||+.++.+.... ..+..++.+++.++||+++||+.+|.+|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876543 3455689999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 492 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~ 492 (799)
...|+.+ ...++.+||..++..+.|..
T Consensus 441 ~~~A~~~------------~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 441 MYIAFYE------------KREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHc------------CCCcCHHHHHHHHHhcCCCc
Confidence 9888643 14578999999999988864
No 52
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-31 Score=259.00 Aligned_cols=244 Identities=20% Similarity=0.325 Sum_probs=205.3
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
..+++++.|++.+++++++.+. |+...+..|.++|+.+|.++|+|||||||||.+|++.|...+ ..|.-+-.
T Consensus 167 tE~YsDiGGldkQIqELvEAiV--Lpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAg 238 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIV--LPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAG 238 (424)
T ss_pred cccccccccHHHHHHHHHHHhc--cccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcc
Confidence 4568999999999999999765 444488999999999999999999999999999999999877 55555666
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
..+...+.|.....+++.|..++...|+||||||+|++...|.+.+..+....+ +..-.|++.+|++.+.. .
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQ-RTMLELLNQLDGFss~~-------~ 310 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQ-RTMLELLNQLDGFSSDD-------R 310 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHH-HHHHHHHHhhcCCCCcc-------c
Confidence 677777777778889999999999999999999999999888887776654443 44445667788887654 4
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH-HHHHHhhcCCCChhhHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+-||++||+.+-+||+|+|+||+++.|+||.|+.+.|.+|++.+.++... ++++ ++++++.+++|+|++++.+|-+|
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhcccccCchhheeeehhh
Confidence 99999999999999999999999999999999999999999987665443 4444 89999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
.+.|++|- ...++.+||...+.+
T Consensus 389 GMiALRr~-----------atev~heDfmegI~e 411 (424)
T KOG0652|consen 389 GMIALRRG-----------ATEVTHEDFMEGILE 411 (424)
T ss_pred hHHHHhcc-----------cccccHHHHHHHHHH
Confidence 99999873 245777888765544
No 53
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=257.98 Aligned_cols=247 Identities=20% Similarity=0.277 Sum_probs=209.4
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...++.++.|..++++++++.+..-+- +++.|..+|+.+|.++|||||||||||.+|+|+|+..+ +.|+.+-
T Consensus 172 pdvty~dvggckeqieklrevve~pll--~perfv~lgidppkgvllygppgtgktl~aravanrtd------acfirvi 243 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLL--HPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD------ACFIRVI 243 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhcccc--CHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC------ceEEeeh
Confidence 467899999999999999998865544 78899999999999999999999999999999999988 8899999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.+++...+.|+-...++++|+.|+....||||+||||++.+.|-+. |.+..+.++...-.|.+.+|++... +
T Consensus 244 gselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfdd-g~ggdnevqrtmleli~qldgfdpr-------g 315 (435)
T KOG0729|consen 244 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD-GAGGDNEVQRTMLELINQLDGFDPR-------G 315 (435)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccC-CCCCcHHHHHHHHHHHHhccCCCCC-------C
Confidence 9999999999999999999999999999999999999998766553 3445555555555566677777654 4
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH-HHHHHhhcCCCChhhHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv~~ 452 (799)
++-|.++||+|+.+||+|+||||+++.++|..|+.+.|..||+.+.+.. .+..++ ++-++..|..-++++|+.+|.+
T Consensus 316 nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpnstgaeirsvcte 393 (435)
T KOG0729|consen 316 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPNSTGAEIRSVCTE 393 (435)
T ss_pred CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCCCcchHHHHHHHH
Confidence 6999999999999999999999999999999999999999999765543 333333 7789999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
|.+.|++.- ....+..||..|..+++
T Consensus 394 agmfairar-----------rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 394 AGMFAIRAR-----------RKVATEKDFLDAVNKVV 419 (435)
T ss_pred hhHHHHHHH-----------hhhhhHHHHHHHHHHHH
Confidence 999887541 24567788888776654
No 54
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1.4e-28 Score=295.65 Aligned_cols=461 Identities=15% Similarity=0.194 Sum_probs=280.3
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~ 290 (799)
+..++.++|.+..+.++++. +.. ....+++|+||||||||++++.+|+.+.... .....++
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~----l~r-----------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDI----LLR-----------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred CCCCCcccCCHHHHHHHHHH----Hhc-----------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 45678889988865555543 321 2345789999999999999999999985331 1224567
Q ss_pred EEecccccc--cchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC
Q 003743 291 FVCCSRLSL--EKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 367 (799)
Q Consensus 291 ~v~~s~l~~--~~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~ 367 (799)
.++.+.+.. .+.+++...++.++..+.. ..+.||||||+|.+.+.+... +.+ ...+.|...+..
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~~~------d~~n~Lkp~l~~------ 314 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-GQG------DAANLLKPALAR------ 314 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-ccc------cHHHHhhHHhhC------
Confidence 777776652 4668888999999998864 467899999999998543321 111 112334443321
Q ss_pred CccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHHhhc
Q 003743 368 SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKC 438 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----~~~~~~~~~l~~la~~~ 438 (799)
+.+.+|++|+..+ .+|++|.| ||. .|.+++|+.++..+|++.+... +++.++++++..++..+
T Consensus 315 -----G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 315 -----GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS 386 (852)
T ss_pred -----CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHc
Confidence 2489999998743 37999999 996 8999999999999997655432 45778999999999999
Q ss_pred CCCChh-----hHHHHHHHHHHHH-hcccc-c---------------------CCCcc--ccc-c---------------
Q 003743 439 DGYDAY-----DLEILVDRTVHAA-VGRYL-H---------------------SDSSF--EKH-I--------------- 472 (799)
Q Consensus 439 ~g~s~~-----dl~~lv~~A~~~a-~~r~~-~---------------------~~~~~--~~~-~--------------- 472 (799)
.+|-.. ---.++++|+... +.+.. + ..... ... .
T Consensus 387 ~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (852)
T TIGR03345 387 HRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAEL 466 (852)
T ss_pred ccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHH
Confidence 876432 2223444444211 11000 0 00000 000 0
Q ss_pred -----------------------------------------------------------cccceecccchhccccccccc
Q 003743 473 -----------------------------------------------------------KPTLVRDDFSQAMHEFLPVAM 493 (799)
Q Consensus 473 -----------------------------------------------------------~~~l~~edf~~al~~~~p~~~ 493 (799)
...++.+|+...+...+....
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~ 546 (852)
T TIGR03345 467 AALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPV 546 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCc
Confidence 000000111100000000000
Q ss_pred cccccc----ccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC--
Q 003743 494 RDITKT----SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-- 567 (799)
Q Consensus 494 ~~~~~~----~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-- 567 (799)
..+... .......--..+.|+++..+.+...+...... -..+-+|...+||+||||||||.+|+++|..+
T Consensus 547 ~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g----l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 547 GRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG----LEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred hhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 000000 00000011235678888888887776532100 00112333458999999999999999999988
Q ss_pred -CCeEEEEeccchhhh------------hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 568 -SLRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 568 -~~~~i~i~~~~l~~~------------~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
...++.++++++... |+|..+.. .+.+..+..+++||+|||||++. ..+.+.|+
T Consensus 623 ~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~-----------~~v~~~Ll 689 (852)
T TIGR03345 623 GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH-----------PDVLELFY 689 (852)
T ss_pred CCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC-----------HHHHHHHH
Confidence 457899999886432 44443321 13344456778999999999863 45777788
Q ss_pred hhccCcc---------ccCcEEEEEecCCCCc-----------------------------cChhhcCCCCcceeeecCC
Q 003743 635 TELDGVE---------VLTGVFVFAATSRPDL-----------------------------LDAALLRPGRLDRLLFCDF 676 (799)
Q Consensus 635 ~~ld~~~---------~~~~vlvi~ttn~~~~-----------------------------ld~al~r~gRf~~~i~~~~ 676 (799)
+.||.-. ...+.+||.|||.... +.|+|+. |++ +|.|.+
T Consensus 690 q~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~p 766 (852)
T TIGR03345 690 QVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLP 766 (852)
T ss_pred HHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCC
Confidence 8776432 1246888889885211 4566676 887 889999
Q ss_pred CCHHHHHHHHHHHHccC--------CCCCccc---HHHHHHHCCC--CcHHHHHHHHHHHHHHHHHHH
Q 003743 677 PSPRERLDILKVISRKL--------PLADDVD---LEAIAHMTEG--FSGADLQALLSDAQLSAVHEI 731 (799)
Q Consensus 677 p~~~~r~~Il~~~~~~~--------~~~~~~~---~~~la~~~~g--~sg~di~~~~~~a~~~a~~~~ 731 (799)
.+.++..+|++..+... ++.-.++ .+.|+....+ +-++.++.+++.-...++...
T Consensus 767 Ls~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 767 LDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999997765432 3322333 4455554422 346777777776665555443
No 55
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=278.23 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=201.1
Q ss_pred hhhhc-cccceeeEEEEecccccccCCCCCceeeeeeccccCCCCHHHHHHHHhcCCCCCceEEEEeeecCccCCC--CC
Q 003743 140 NKTKA-RELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGF--DS 216 (799)
Q Consensus 140 ~~~~~-~~~~~e~~~l~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~ 216 (799)
.-+.. +++|+|+++.+.|+- -.....+...+.+++.-....++.+-++++...|..... +.
T Consensus 135 ~~~L~f~k~~~e~V~~syl~~----------------v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~Hps 198 (457)
T KOG0743|consen 135 YFELTFHKKPRELVTLSYLPY----------------VVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPS 198 (457)
T ss_pred EEEEEecCccHHHhHHhHHHH----------------HHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCC
Confidence 33555 788888888888721 111112233344444433455566777778888865443 78
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
+|++|++..+.+++|++++..|+. ...||.+.|.++.|++|||||||||||+++.|+|++|+ +.++.++.+.
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k--~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~------ydIydLeLt~ 270 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIK--GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN------YDIYDLELTE 270 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHh--cchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC------CceEEeeecc
Confidence 899999999999999999999998 78999999999999999999999999999999999999 7777777766
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCC--CCc-hhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 297 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGS--QPS-TSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 297 l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~--~~~-~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
..... + +++++... ...+||+|+|||+-+..+...... ... ......++.|++.+|++.+.. + +
T Consensus 271 v~~n~-----d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc----g-~ 337 (457)
T KOG0743|consen 271 VKLDS-----D-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC----G-D 337 (457)
T ss_pred ccCcH-----H-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC----C-C
Confidence 44332 2 67777665 677899999999987432222111 111 123367899999999988653 2 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc-cCCCHHHHHHHHhhcCC--CChhhHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS-LECSDEILLDVASKCDG--YDAYDLEIL 449 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~-~~~~~~~l~~la~~~~g--~s~~dl~~l 449 (799)
..+||+|||+++.|||||+||||+|++|+++.++.++.+.++..|+.... ..+-+ .+.+..++ .+|+++...
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~----eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFD----EIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhH----HHHHHhhcCccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998754 33333 33333333 588888654
No 56
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=261.84 Aligned_cols=226 Identities=21% Similarity=0.326 Sum_probs=197.9
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|+++.|++++++.+.+.+..-+ ..|++|..--.|+ +++|||||||||||+||+|+|.+.+ ..|..|+.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPI--KFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAn------STFFSvSS 199 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPI--KFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 199 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecc--cchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcC------CceEEeeh
Confidence 3468999999999999999665444 4788887755554 6699999999999999999999998 77888999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+++...+.|+.+..++.+|..|+++.|+||||||||.+++.|++++ +....++...|+-.|.++..... .
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE----seasRRIKTEfLVQMqGVG~d~~------g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE----SEASRRIKTEFLVQMQGVGNDND------G 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc----hHHHHHHHHHHHHhhhccccCCC------c
Confidence 9999999999999999999999999999999999999997766543 34445677777777887765443 5
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
|+|.++||-|+.||.|++| ||..+|++|.|....|..+|+.++..-...+++..+.+|+..++||+|+||..+++.|.
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q 003743 455 HAAVGRY 461 (799)
Q Consensus 455 ~~a~~r~ 461 (799)
+.-+++.
T Consensus 348 mePvRkv 354 (439)
T KOG0739|consen 348 MEPVRKV 354 (439)
T ss_pred hhhHHHh
Confidence 8877654
No 57
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.1e-29 Score=282.23 Aligned_cols=251 Identities=23% Similarity=0.345 Sum_probs=207.8
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
....+++|+|++.+++.+.+.+...+. .+..|...|+++|+++|||||||||||++|+++|+.++ .+++.++
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~ 197 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLK--KPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVV 197 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEee
Confidence 356789999999999999998877665 77899999999999999999999999999999999998 7788899
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++.+...+.+.....++.+|..+....|+||||||+|.+++.+.+....+ .......+..++..++++... +
T Consensus 198 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~-~~~~~~~l~~lL~~ld~~~~~-------~ 269 (389)
T PRK03992 198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSG-DREVQRTLMQLLAEMDGFDPR-------G 269 (389)
T ss_pred hHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCc-cHHHHHHHHHHHHhccccCCC-------C
Confidence 99988777777788899999999888999999999999987655433222 222334444555555554322 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
++.||+|||.++.+|++++|||||+..|+|++|+.++|.+||+.++....+. .+..+..++..++||+++||..+|++|
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA 348 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEA 348 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999988765543 223488999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 492 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~ 492 (799)
.+.|+++. ...++.+||..|+..+.+..
T Consensus 349 ~~~a~~~~-----------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 349 GMFAIRDD-----------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHcC-----------CCCcCHHHHHHHHHHHhccc
Confidence 99887652 24588999999998876654
No 58
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=253.79 Aligned_cols=238 Identities=24% Similarity=0.321 Sum_probs=199.2
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+.++++++|.+.++....= |..+|. .++.|.. =.|++||||||||||||++|+++|++.. .+++.+..
T Consensus 117 ~it~ddViGqEeAK~kcrl-i~~yLe--nPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~k------vp~l~vka 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRL-IMEYLE--NPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKA 184 (368)
T ss_pred cccHhhhhchHHHHHHHHH-HHHHhh--ChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccC------CceEEech
Confidence 5678999999998876543 333444 4444443 3588999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
..+.+...|.....++.++..|.+..|||+||||+|++.-.|.-.+-. ..+..+.+.|+..||+..... .
T Consensus 185 t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR---GDVsEiVNALLTelDgi~ene-------G 254 (368)
T COG1223 185 TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR---GDVSEIVNALLTELDGIKENE-------G 254 (368)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc---ccHHHHHHHHHHhccCcccCC-------c
Confidence 999999999999999999999999999999999999998654432222 234578889999999987554 3
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHH-HHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE-ILVDRT 453 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~-~lv~~A 453 (799)
|..|++||.++.||+++++ ||...|+|..|+.+||..|++.+++...+++... ++.++..+.|+|++||. .+++.|
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999988887665 99999999999999985 567778
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
.+.|+.. +...+..+|+..|+.+.
T Consensus 332 Lh~Ai~e-----------d~e~v~~edie~al~k~ 355 (368)
T COG1223 332 LHRAIAE-----------DREKVEREDIEKALKKE 355 (368)
T ss_pred HHHHHHh-----------chhhhhHHHHHHHHHhh
Confidence 8887754 33567889999888763
No 59
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=1.1e-27 Score=289.50 Aligned_cols=461 Identities=18% Similarity=0.246 Sum_probs=290.3
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEEE
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVF 291 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~~ 291 (799)
..++.++|.+..++++++.+ . .+.+.+++|+||||||||++|+.+|..+.... .....++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L----~-----------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQIL----G-----------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHH----c-----------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 45677899988877776643 2 12456799999999999999999999875321 12356788
Q ss_pred Eeccccc--ccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 003743 292 VCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 369 (799)
Q Consensus 292 v~~s~l~--~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~ 369 (799)
++.+.+. ..+.|++..+++.++..+....+.||||||+|.+.+.+.. .+.. ...+.|...+..
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-~g~~------~~a~lLkp~l~r-------- 305 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-EGAI------DAANILKPALAR-------- 305 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-CCcc------cHHHHhHHHHhC--------
Confidence 8887665 3456888999999999987777899999999999854332 1111 223334433331
Q ss_pred cCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhh----hcccCCCHHHHHHHHhhcCC
Q 003743 370 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDG 440 (799)
Q Consensus 370 ~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~----~~~~~~~~~~l~~la~~~~g 440 (799)
+.+.+|++|+..+ ..|++|.+ ||. .|.++.|+.++..+|++.... ..++.++++++..++..+.+
T Consensus 306 ---g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 306 ---GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred ---CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 2488999998754 46899999 997 689999999999999885432 34566899999999998887
Q ss_pred CChh-----hHHHHHHHHHHHH-hccc-ccCC---------------------Ccc------------------------
Q 003743 441 YDAY-----DLEILVDRTVHAA-VGRY-LHSD---------------------SSF------------------------ 468 (799)
Q Consensus 441 ~s~~-----dl~~lv~~A~~~a-~~r~-~~~~---------------------~~~------------------------ 468 (799)
|.+. -.-.+++.|+... +... .+.. ...
T Consensus 380 yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (821)
T CHL00095 380 YIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSK 459 (821)
T ss_pred cCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6542 2334555555322 1100 0000 000
Q ss_pred -----cccccccceecccchhcccccccccccccccc----cCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCC
Q 003743 469 -----EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS----AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 539 (799)
Q Consensus 469 -----~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~----~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~ 539 (799)
.......++.+|+...+...+-.....+.... ......--..+.|++++.+.+...+...... -..+
T Consensus 460 ~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g----l~~~ 535 (821)
T CHL00095 460 KTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG----LKNP 535 (821)
T ss_pred HhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc----ccCC
Confidence 00001223334433333322111000000000 0000011246789999999888776532100 0011
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhh-----h-------hhcccHHHHHHHHHHhHhcCCe
Q 003743 540 LRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-----K-------YIGASEQAVRDIFSKATAAAPC 604 (799)
Q Consensus 540 ~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~-----~-------~~g~se~~i~~~f~~a~~~~p~ 604 (799)
-+|...+||+||||||||++|+++|+.+ +.+++.++++++.. + |+|..+ ...+.+..+..+.+
T Consensus 536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~ 613 (821)
T CHL00095 536 NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYT 613 (821)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCe
Confidence 2334568999999999999999999987 46899999887632 2 333322 12344555666678
Q ss_pred EEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---------ccCcEEEEEecCCCCc------------------
Q 003743 605 LLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL------------------ 657 (799)
Q Consensus 605 ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~---------~~~~vlvi~ttn~~~~------------------ 657 (799)
||+|||+|++ ...+.+.|++.|+.-. ...+.+||.|||....
T Consensus 614 VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~ 682 (821)
T CHL00095 614 VVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQL 682 (821)
T ss_pred EEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCccccccc
Confidence 9999999997 3567888888887422 2357889999885321
Q ss_pred -------------------cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC-------CCCCccc---HHHHHHH-
Q 003743 658 -------------------LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-------PLADDVD---LEAIAHM- 707 (799)
Q Consensus 658 -------------------ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~~---~~~la~~- 707 (799)
+.|.|+. |+|.++.|.+.+.++..+|++..+..+ ++.-.++ .+.|+..
T Consensus 683 ~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 683 SEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred ccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 2245666 999999999999999999997665432 2222233 3444443
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHHH
Q 003743 708 -TEGFSGADLQALLSDAQLSAVHEI 731 (799)
Q Consensus 708 -~~g~sg~di~~~~~~a~~~a~~~~ 731 (799)
...+-++.|+.+++.-....+...
T Consensus 761 ~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 761 YNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHH
Confidence 223446777777766665555443
No 60
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=277.99 Aligned_cols=247 Identities=20% Similarity=0.317 Sum_probs=204.6
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...+|.+|.|++.+++.+.+.+...+. .+.+|..+|+.+++++|||||||||||++|+++|+.+. .+++.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~--~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~ 249 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLT--HPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVV 249 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhh--CHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEe
Confidence 356789999999999999998876665 78899999999999999999999999999999999987 6778888
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++.+...+.+.....++.+|..+....|+||||||||.++..+.+....+ .......+..++..+|++... .
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg-~~e~qr~ll~LL~~Ldg~~~~-------~ 321 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGG-EKEIQRTMLELLNQLDGFDSR-------G 321 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcc-cHHHHHHHHHHHHHHhhhccc-------C
Confidence 88888777777778899999999889999999999999986554332222 222234444566666765432 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
++.||++||+++.+|++++|||||+.+|+|+.|+.++|.+||+.++.+..+. .+..++.++..++|++++||..+|..|
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA 400 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEA 400 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988765443 233488999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
...|+++. ...++.+||..|+..+
T Consensus 401 ~~~Alr~~-----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 401 GLLALRER-----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHhc-----------CCccCHHHHHHHHHHH
Confidence 99988662 3568899999888765
No 61
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-29 Score=263.95 Aligned_cols=234 Identities=22% Similarity=0.309 Sum_probs=204.1
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEE
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTY-HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI 289 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~-g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~ 289 (799)
+..+...|++|.|++.+++.+.+.+..-+ ..+.+|... -+.++++||||||||||||++|+++|++.+ ..+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPl--r~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~f 155 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPL--RRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANF 155 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcc--cchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCc
Confidence 44567889999999999999988665444 478888533 346789999999999999999999999999 889
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 003743 290 VFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 369 (799)
Q Consensus 290 ~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~ 369 (799)
+.|..+.+...+.|+..+.+..+|..|..-.|+||||||+|.++..|. +..+.....+.+.+...+|++.+....
T Consensus 156 Inv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~- 230 (386)
T KOG0737|consen 156 INVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSE- 230 (386)
T ss_pred ceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCc-
Confidence 999999999999999999999999999999999999999999997652 445666667888888899998866442
Q ss_pred cCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHH
Q 003743 370 CGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEIL 449 (799)
Q Consensus 370 ~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~l 449 (799)
.|+|+++||+|.++|+|++| |++..++++.|+..+|.+|++.+++...+. ++-.+..++..|+||||.||.++
T Consensus 231 ----rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkel 303 (386)
T KOG0737|consen 231 ----RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKEL 303 (386)
T ss_pred ----eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHH
Confidence 59999999999999999999 999999999999999999999999987775 44459999999999999999999
Q ss_pred HHHHHHHHhcccccC
Q 003743 450 VDRTVHAAVGRYLHS 464 (799)
Q Consensus 450 v~~A~~~a~~r~~~~ 464 (799)
|..|+...++.++..
T Consensus 304 C~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 304 CRLAALRPIRELLVS 318 (386)
T ss_pred HHHHhHhHHHHHHHh
Confidence 999999998887744
No 62
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=271.93 Aligned_cols=227 Identities=25% Similarity=0.269 Sum_probs=196.4
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
-.+.++.|+.++++-+.+-+.. +...+..|....++.+.+||||||||||||+||.++|...+ ..++.+...
T Consensus 664 i~w~digg~~~~k~~l~~~i~~--P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fisvKGP 735 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEW--PSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFISVKGP 735 (952)
T ss_pred CCceecccHHHHHHHHHHHHhc--cccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEEecCH
Confidence 5689999999988866665443 33467889999999999999999999999999999999998 888999999
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCE
Q 003743 296 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 375 (799)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v 375 (799)
++...+.|..++.++++|..|....|||||+||+|.++|.|+... .....++.++|+..||+...- ..|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs----TGVTDRVVNQlLTelDG~Egl-------~GV 804 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS----TGVTDRVVNQLLTELDGAEGL-------DGV 804 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC----CCchHHHHHHHHHhhcccccc-------ceE
Confidence 999999999999999999999999999999999999998776532 222347889999999986543 349
Q ss_pred EEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 376 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 376 ~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
.|+++|.+|+.+||||+||||++..++.+.|+..+|.+|++......... ++..++.++..++||+++||+.++..|..
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876544333 45569999999999999999999999999
Q ss_pred HHhcccc
Q 003743 456 AAVGRYL 462 (799)
Q Consensus 456 ~a~~r~~ 462 (799)
.|+.+++
T Consensus 884 ~avh~~l 890 (952)
T KOG0735|consen 884 AAVHEIL 890 (952)
T ss_pred HHHHHHH
Confidence 8888766
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=282.40 Aligned_cols=249 Identities=24% Similarity=0.347 Sum_probs=217.5
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
....+.+++|++..++.+.+.+...+. .+..|...++++++++|||||||||||++|+++|.+++ .+++.+.
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~--~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~ 308 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLK--RPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVK 308 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhh--ChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEee
Confidence 366789999999999999998877776 56668888999999999999999999999999999998 8999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.+++...+.|++.+.++.+|..|....||||||||+|++++.++..... ....+...++..+++.....
T Consensus 309 ~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~----~~~r~~~~lL~~~d~~e~~~------- 377 (494)
T COG0464 309 GSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG----SGRRVVGQLLTELDGIEKAE------- 377 (494)
T ss_pred CHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch----HHHHHHHHHHHHhcCCCccC-------
Confidence 9999999999999999999999999999999999999999766543322 12467888888888766543
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccC-CCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~-~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
+|++|++||+++.+|++++|||||+..++|++|+..+|.+||+.++...... ..+..++.+++.++||+++||..+|++
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999876654 455668999999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
|.+.++.+.. ...++.+||..++....|+
T Consensus 458 a~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 458 AALEALREAR----------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHHhc----------cCCccHHHHHHHHHhcCCC
Confidence 9999987743 3568899999998886665
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=2.7e-28 Score=280.30 Aligned_cols=248 Identities=21% Similarity=0.325 Sum_probs=203.8
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 292 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v 292 (799)
....+|++++|.+.+++.+.+.+.. +. .+..|...|.+.++++|||||||||||++|+++|++++ .+++.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~--~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~~~i 119 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LK--NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSI 119 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HH--CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCeeec
Confidence 3467899999999999998876554 43 66788888999999999999999999999999999988 788889
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 293 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 293 ~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
+++++.....+.....++.+|..+....|+||||||+|.+++.+...... .........+.|+..+|++....
T Consensus 120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~~~------ 192 (495)
T TIGR01241 120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGTNT------ 192 (495)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccCCC------
Confidence 98887766666667789999999988999999999999998665442111 12233456677777788765432
Q ss_pred CCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 373 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 373 ~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.++||+|||+++.+|++++|||||+.+|+++.|+.++|.+|++.++...... .+..+..++..+.||+++||..+|++
T Consensus 193 -~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~e 270 (495)
T TIGR01241 193 -GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNE 270 (495)
T ss_pred -CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998876554 34558899999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
|+..+.++ ....++.+||..++....
T Consensus 271 A~~~a~~~-----------~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 271 AALLAARK-----------NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHc-----------CCCCCCHHHHHHHHHHHh
Confidence 98776543 224688899998887654
No 65
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-28 Score=275.99 Aligned_cols=248 Identities=21% Similarity=0.318 Sum_probs=213.6
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 292 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v 292 (799)
..+.+|.++.|.+++++++.+-+. +|. .+..|..+|...|+++||+||||||||.||+++|.+.+ .++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVd-fLk--~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~i 214 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVD-FLK--NPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSI 214 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHH-HHh--CchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC------CCceec
Confidence 457889999999999998887654 444 66789999999999999999999999999999999999 899999
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 293 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 293 ~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
+.+++.....|.-..+++++|.++++..|||+||||||+....|....|.+ ......++++|+..||++....
T Consensus 215 SGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Ggg-nderEQTLNQlLvEmDGF~~~~------ 287 (596)
T COG0465 215 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGG-NDEREQTLNQLLVEMDGFGGNE------ 287 (596)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCC-chHHHHHHHHHHhhhccCCCCC------
Confidence 999999888888888999999999999999999999999987665543333 3444578889999999987433
Q ss_pred CCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 373 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 373 ~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.|++|++||+++-+|+||+|||||++.|.++.|+...|.+|++.+++...+. .+..+..+++.+.||+++|+.+++.+
T Consensus 288 -gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 288 -GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred -ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHH
Confidence 4999999999999999999999999999999999999999999888877665 23336779999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
|+..|.++ ....++..||..+..++.
T Consensus 366 Aal~aar~-----------n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 366 AALLAARR-----------NKKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHHHh-----------cCeeEeccchHHHHHHHh
Confidence 99888766 235688888888877654
No 66
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=9.2e-28 Score=269.78 Aligned_cols=226 Identities=20% Similarity=0.305 Sum_probs=174.1
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc----eeeEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIV 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~----~~~~~~ 290 (799)
+.+|++|+|++.+++.+.+.+...+. .+.+|..+|+++|+++|||||||||||++|+++|+.+..... ....++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~--~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFL--HPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhh--CHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 56799999999999999999876554 778999999999999999999999999999999999874321 113344
Q ss_pred EEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 291 FVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 291 ~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
.+..+++...+.+.....++.+|..+.. ..|+||||||+|.++..+.... .......+...|+..+|++...
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il~~LL~~LDgl~~~- 331 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVVPQLLSELDGVESL- 331 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc---cchHHHHHHHHHHHHhcccccC-
Confidence 5555677777778888888888887765 3699999999999996554321 1222345677888888886543
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhH
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL 446 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl 446 (799)
+++++|+|||+++.|||+++|||||+.+|+|+.|+.+++.+||+.++... +.++++ +..+.|++++++
T Consensus 332 ------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~-----l~~~~g~~~a~~ 399 (512)
T TIGR03689 332 ------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDAD-----LAEFDGDREATA 399 (512)
T ss_pred ------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHH-----HHHhcCCCHHHH
Confidence 25999999999999999999999999999999999999999999988652 333222 122456666666
Q ss_pred HHHHHHHHHHHh
Q 003743 447 EILVDRTVHAAV 458 (799)
Q Consensus 447 ~~lv~~A~~~a~ 458 (799)
..++++++...+
T Consensus 400 ~al~~~av~~~~ 411 (512)
T TIGR03689 400 AALIQRAVDHLY 411 (512)
T ss_pred HHHHHHHHHHHh
Confidence 666666654443
No 67
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=2.7e-26 Score=276.85 Aligned_cols=462 Identities=16% Similarity=0.238 Sum_probs=270.8
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~ 290 (799)
+..++.++|.+..+.++++ .|+. ....+++|+||||||||++++++|..+.... ....+++
T Consensus 174 ~~~l~~vigr~~ei~~~i~----iL~r-----------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQ----VLQR-----------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred cCCCCcCCCCHHHHHHHHH----HHhc-----------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 4467888999876554444 3432 2345699999999999999999999985321 1125677
Q ss_pred EEeccccc--ccchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC
Q 003743 291 FVCCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 367 (799)
Q Consensus 291 ~v~~s~l~--~~~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~ 367 (799)
.++.+.+. ..+.+.+...++.+|..+.. ..++||||||+|.+.+.+.. .+. . ...+.|...+.
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~-~~~---~---d~~~~lkp~l~------- 304 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DGA---M---DAGNMLKPALA------- 304 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC-ccc---h---hHHHHhcchhh-------
Confidence 78777654 34567888889999987643 56789999999999854322 111 1 12333333332
Q ss_pred CccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHHhhc
Q 003743 368 SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKC 438 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----~~~~~~~~~l~~la~~~ 438 (799)
.+.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+... +++.++++.+...+..+
T Consensus 305 ----~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls 377 (857)
T PRK10865 305 ----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLS 377 (857)
T ss_pred ----cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHh
Confidence 13489999999866 37999999 997 6889999999999999876543 34566777777766665
Q ss_pred CCCCh-----hhHHHHHHHHHHHH-hc------------cc----------ccCC-Ccc-------------------c-
Q 003743 439 DGYDA-----YDLEILVDRTVHAA-VG------------RY----------LHSD-SSF-------------------E- 469 (799)
Q Consensus 439 ~g~s~-----~dl~~lv~~A~~~a-~~------------r~----------~~~~-~~~-------------------~- 469 (799)
+.|.. .....+++.++... +. +. +... ... .
T Consensus 378 ~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~ 457 (857)
T PRK10865 378 HRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSE 457 (857)
T ss_pred hccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 54431 11111222221100 00 00 0000 000 0
Q ss_pred -----ccc--------------------------------------------------------------cccceecccc
Q 003743 470 -----KHI--------------------------------------------------------------KPTLVRDDFS 482 (799)
Q Consensus 470 -----~~~--------------------------------------------------------------~~~l~~edf~ 482 (799)
... ...++.+|+.
T Consensus 458 L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 537 (857)
T PRK10865 458 LEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIA 537 (857)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHH
Confidence 000 0001111111
Q ss_pred hhccccccccccccccc----ccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHH
Q 003743 483 QAMHEFLPVAMRDITKT----SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 558 (799)
Q Consensus 483 ~al~~~~p~~~~~~~~~----~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 558 (799)
..+...+......+... .......-...+.|++.+.+.+...+...... -..+-+|...+||+||||||||+
T Consensus 538 ~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g----l~~~~~p~~~~Lf~Gp~G~GKT~ 613 (857)
T PRK10865 538 EVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG----LSDPNRPIGSFLFLGPTGVGKTE 613 (857)
T ss_pred HHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc----ccCCCCCCceEEEECCCCCCHHH
Confidence 11111000000000000 00000011335678887777777766531100 00011233468999999999999
Q ss_pred HHHHHHHhC---CCeEEEEeccchhhh-----hh-------cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCC
Q 003743 559 IVGAAAAAC---SLRFISVKGPELLNK-----YI-------GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 623 (799)
Q Consensus 559 la~alA~~~---~~~~i~i~~~~l~~~-----~~-------g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~ 623 (799)
+|+++|..+ +.+++.++++++... .+ |..+. ..+....+....+||||||++++.
T Consensus 614 lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~-------- 683 (857)
T PRK10865 614 LCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAH-------- 683 (857)
T ss_pred HHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCC--------
Confidence 999999876 467999999886432 12 22111 112222344455899999999873
Q ss_pred chhhHHHHHHHhhccCcc---------ccCcEEEEEecCCCC-------------------------ccChhhcCCCCcc
Q 003743 624 GVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPD-------------------------LLDAALLRPGRLD 669 (799)
Q Consensus 624 ~~~~r~~~~ll~~ld~~~---------~~~~vlvi~ttn~~~-------------------------~ld~al~r~gRf~ 669 (799)
..+++.|++.|+.-. ...+.+||+|||... .+.|+|+. |++
T Consensus 684 ---~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld 758 (857)
T PRK10865 684 ---PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RID 758 (857)
T ss_pred ---HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCC
Confidence 457778888775321 234567888998731 14567887 999
Q ss_pred eeeecCCCCHHHHHHHHHHHHccC-------CCCCcccHHHHHHHC-CCCc----HHHHHHHHHHHHHHHHHHH
Q 003743 670 RLLFCDFPSPRERLDILKVISRKL-------PLADDVDLEAIAHMT-EGFS----GADLQALLSDAQLSAVHEI 731 (799)
Q Consensus 670 ~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~~~~~la~~~-~g~s----g~di~~~~~~a~~~a~~~~ 731 (799)
.++.|.+++.+...+|++.++... ++.-.++.+.+.... .||+ .+.|+.+++.-....+.+.
T Consensus 759 ~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 759 EVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987765442 333344544444433 2454 5778777776665554443
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=2.5e-26 Score=278.52 Aligned_cols=463 Identities=15% Similarity=0.230 Sum_probs=279.3
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~ 290 (799)
+..++.++|.+..+.++++ .|.. ....+++|+||||||||++++++|..+.... ....+++
T Consensus 169 ~~~~~~~igr~~ei~~~~~----~l~r-----------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQ----VLSR-----------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred CCCCCcCCCcHHHHHHHHH----HHhc-----------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 4467788998876555444 3331 2356689999999999999999999874321 1125677
Q ss_pred EEeccccc--ccchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC
Q 003743 291 FVCCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 367 (799)
Q Consensus 291 ~v~~s~l~--~~~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~ 367 (799)
.++.+.+. ..+.+.+...++.++..+.. ..+.||||||+|.+.+.+... + .. ...+.|...+.
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~---~~---d~~~~Lk~~l~------- 299 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-G---AM---DAGNMLKPALA------- 299 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-c---hh---HHHHHhchhhh-------
Confidence 77776654 34557788889999988754 358899999999998533221 1 11 12333333321
Q ss_pred CccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHHhhc
Q 003743 368 SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKC 438 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----~~~~~~~~~l~~la~~~ 438 (799)
.+.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+... +++.+.++.+..++..+
T Consensus 300 ----~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 300 ----RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLS 372 (852)
T ss_pred ----cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhc
Confidence 12489999998853 47999999 997 6899999999999999876543 45667888888888888
Q ss_pred CCCCh-----hhHHHHHHHHHHHHhcccc--cC---------------------CCcc----------------------
Q 003743 439 DGYDA-----YDLEILVDRTVHAAVGRYL--HS---------------------DSSF---------------------- 468 (799)
Q Consensus 439 ~g~s~-----~dl~~lv~~A~~~a~~r~~--~~---------------------~~~~---------------------- 468 (799)
.+|.. .---.++++|+...--+.. +. ....
T Consensus 373 ~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (852)
T TIGR03346 373 HRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYAD 452 (852)
T ss_pred cccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77643 2223445555432210000 00 0000
Q ss_pred -----ccc---------------------------------------------------------------ccccceecc
Q 003743 469 -----EKH---------------------------------------------------------------IKPTLVRDD 480 (799)
Q Consensus 469 -----~~~---------------------------------------------------------------~~~~l~~ed 480 (799)
... ....++.+|
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~ 532 (852)
T TIGR03346 453 LEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEE 532 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHH
Confidence 000 000000111
Q ss_pred cchhccccc--cccc-cc-ccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcH
Q 003743 481 FSQAMHEFL--PVAM-RD-ITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGK 556 (799)
Q Consensus 481 f~~al~~~~--p~~~-~~-~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGK 556 (799)
+...+...+ |... .. -..........-...+.|++.+.+.+...+...... -..+-+|...+||+|||||||
T Consensus 533 i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g----l~~~~~p~~~~Lf~Gp~GvGK 608 (852)
T TIGR03346 533 IAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG----LSDPNRPIGSFLFLGPTGVGK 608 (852)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc----CCCCCCCCeEEEEEcCCCCCH
Confidence 111000000 0000 00 000000000011245778888877777766532100 001123445799999999999
Q ss_pred HHHHHHHHHhC---CCeEEEEeccchhh-----h-------hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC
Q 003743 557 THIVGAAAAAC---SLRFISVKGPELLN-----K-------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 621 (799)
Q Consensus 557 T~la~alA~~~---~~~~i~i~~~~l~~-----~-------~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~ 621 (799)
|++|+++|..+ +.+++.++++++.. . |+|..+ -..+....+..+.+|||||||+++
T Consensus 609 t~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka------- 679 (852)
T TIGR03346 609 TELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA------- 679 (852)
T ss_pred HHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC-------
Confidence 99999999976 56899999987643 1 222221 122333345556679999999987
Q ss_pred CCchhhHHHHHHHhhccCcc---------ccCcEEEEEecCCCCc-------------------------cChhhcCCCC
Q 003743 622 NTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL-------------------------LDAALLRPGR 667 (799)
Q Consensus 622 ~~~~~~r~~~~ll~~ld~~~---------~~~~vlvi~ttn~~~~-------------------------ld~al~r~gR 667 (799)
...+++.|++.|+.-. ...+.+||+|||.... +.|.|+. |
T Consensus 680 ----~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--R 753 (852)
T TIGR03346 680 ----HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--R 753 (852)
T ss_pred ----CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--C
Confidence 3567888888885321 1346888999997322 3356665 9
Q ss_pred cceeeecCCCCHHHHHHHHHHHHcc-------CCCCCccc---HHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHh
Q 003743 668 LDRLLFCDFPSPRERLDILKVISRK-------LPLADDVD---LEAIAHMT--EGFSGADLQALLSDAQLSAVHEIL 732 (799)
Q Consensus 668 f~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~~~~~---~~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 732 (799)
++.++.|.+++.+...+|+...+.. .++.-.++ .+.|+... ..+..+.++.+++......+.+.+
T Consensus 754 id~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 754 IDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred cCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999765532 22222233 44455542 135578888888877776665443
No 69
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=1.3e-27 Score=277.23 Aligned_cols=246 Identities=20% Similarity=0.320 Sum_probs=201.4
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...+|++++|.+..++.+.+.+. ++. .+..|...|...++++||+||||||||++|+++|++++ .+++.++
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~-~lk--~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~------~p~i~is 248 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVS-FLK--KPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE------VPFFSIS 248 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHH-HHh--CHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeeecc
Confidence 35689999999999988766554 444 56678888999999999999999999999999999998 7889999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++.....+.....++.+|..+....|+||||||+|.+...+....+.. .......+..|+..+|++....
T Consensus 249 ~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~-~~e~~~~L~~LL~~~dg~~~~~------- 320 (638)
T CHL00176 249 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGG-NDEREQTLNQLLTEMDGFKGNK------- 320 (638)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCC-cHHHHHHHHHHHhhhccccCCC-------
Confidence 98877665566667788999999989999999999999986554332222 2333456677777787765432
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
.++||++||+++.+|++++|||||+.+|.++.|+.++|.+|++.++....+ ..+..+..++..+.||+++||.++|++|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999987443 3455689999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
+..+.++ ....++.+||..|+..+
T Consensus 400 al~a~r~-----------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 400 AILTARR-----------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHh-----------CCCCcCHHHHHHHHHHH
Confidence 8776544 22568889999888765
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=3.3e-27 Score=261.37 Aligned_cols=246 Identities=24% Similarity=0.337 Sum_probs=197.8
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
....+++++|++.+++.+.+.+...+. .+..|...|+.+|+++|||||||||||++|+++|+.++ .+++.+.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~ 188 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLK--HPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVV 188 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecc
Confidence 355789999999999999998876665 67889999999999999999999999999999999988 6677777
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++.+...+.+.....++.+|..+....|+||||||+|.+...+.+..... .......+..++..++++... +
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~-~~~~~~~l~~ll~~ld~~~~~-------~ 260 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSG-DREVQRTLMQLLAELDGFDPR-------G 260 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCc-cHHHHHHHHHHHHHhhCCCCC-------C
Confidence 77776666666777788899988888999999999999986554332222 222233444455555544322 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
++.||+|||.++.+|++++|||||+..|+|+.|+.++|.+|++.++....+. .+..+..++..++||+++|+..+|..|
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A 339 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEA 339 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999887665443 123488999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
.+.|+++. ...++.+||..|+..
T Consensus 340 ~~~a~~~~-----------~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 340 GMFAIREE-----------RDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHhC-----------CCccCHHHHHHHHHH
Confidence 99987652 246888999888764
No 71
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-26 Score=264.69 Aligned_cols=420 Identities=19% Similarity=0.257 Sum_probs=276.9
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~ 290 (799)
...++.++|.+..+.++++-| +. ....+-+|+|+||+|||.++..+|...-.+. .....++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL----~R-----------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQIL----SR-----------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHH----hc-----------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 345788899998777776643 21 1234468889999999999999999876442 2335567
Q ss_pred EEecccccc--cchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCC
Q 003743 291 FVCCSRLSL--EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 368 (799)
Q Consensus 291 ~v~~s~l~~--~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~ 368 (799)
.++.+.+.. .+.|+++.+++.++.+.....+.||||||+|.+.+.....++ .. ...+.|...+..
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~---a~---DAaNiLKPaLAR------- 297 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG---AM---DAANLLKPALAR------- 297 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc---cc---chhhhhHHHHhc-------
Confidence 777766653 456999999999999998877899999999999965433221 11 233444444332
Q ss_pred ccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHH----hhhcccCCCHHHHHHHHhhcC
Q 003743 369 SCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE----IQRRSLECSDEILLDVASKCD 439 (799)
Q Consensus 369 ~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~----l~~~~~~~~~~~l~~la~~~~ 439 (799)
+.+.+|++|+.-+ .-|+||-| ||. .|.+..|+.++-..|++.. -..+++.++++++...+..++
T Consensus 298 ----GeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~ 370 (786)
T COG0542 298 ----GELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD 370 (786)
T ss_pred ----CCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHH
Confidence 2378888887633 23899999 998 8999999999999999844 345677889999988888776
Q ss_pred CCCh-----hhHHHHHHHHHHHHhccc-ccCCC---------------cc--cc--cccc--------------------
Q 003743 440 GYDA-----YDLEILVDRTVHAAVGRY-LHSDS---------------SF--EK--HIKP-------------------- 474 (799)
Q Consensus 440 g~s~-----~dl~~lv~~A~~~a~~r~-~~~~~---------------~~--~~--~~~~-------------------- 474 (799)
.|-. .---.++++|+...--.. .+..- .. +. ..+.
T Consensus 371 RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~ 450 (786)
T COG0542 371 RYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKEL 450 (786)
T ss_pred hhcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 5532 222345555553221110 00000 00 00 0000
Q ss_pred --cceecccchhccccc--ccc-ccccccc-ccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCC----CCCC
Q 003743 475 --TLVRDDFSQAMHEFL--PVA-MRDITKT-SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL----RLRS 544 (799)
Q Consensus 475 --~l~~edf~~al~~~~--p~~-~~~~~~~-~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~ 544 (799)
.++.+++...+..++ |.. +...... .......--..+.|+++....+...+... +.|+ +|.+
T Consensus 451 ~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--------RaGL~dp~rPig 522 (786)
T COG0542 451 EAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIG 522 (786)
T ss_pred hhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--------hcCCCCCCCCce
Confidence 022233333332221 111 0000000 00000112346789999999988877642 2232 4556
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCC---CeEEEEeccchhhh------------hhcccHHHHHHHHHHhHhcCCeEEEEc
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFD 609 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~---~~~i~i~~~~l~~~------------~~g~se~~i~~~f~~a~~~~p~ILfiD 609 (799)
+.||.||+|+|||.+|++||..+. ..++.+++|++..+ |+|..+. ..+-+..+..++|||+||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlD 600 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLD 600 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEec
Confidence 789999999999999999999985 78999999998643 5555442 234445567778999999
Q ss_pred ccccccCCCCCCCCchhhHHHHHHHhhccCccc---------cCcEEEEEecCCCCc-----------------------
Q 003743 610 EFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATSRPDL----------------------- 657 (799)
Q Consensus 610 Eid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~---------~~~vlvi~ttn~~~~----------------------- 657 (799)
||++. ...+++-|++.||.-.- ..+.+||.|||--..
T Consensus 601 EIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 601 EIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred hhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHH
Confidence 99997 46799999999976432 346899999984211
Q ss_pred -----cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc
Q 003743 658 -----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 658 -----ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
..|.|+. |+|.+|.|.+.+.+...+|+...+..
T Consensus 670 ~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 670 ELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 3456666 99999999999999999999776543
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=4.3e-27 Score=284.68 Aligned_cols=215 Identities=17% Similarity=0.190 Sum_probs=172.5
Q ss_pred hhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccc------------------------
Q 003743 246 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------ 301 (799)
Q Consensus 246 ~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~------------------------ 301 (799)
.+..+|+.+|+||||+||||||||+||+|+|.+++ .+++.++++++....
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 45678899999999999999999999999999999 888888888776422
Q ss_pred -----------------h--hhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 003743 302 -----------------G--PIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 362 (799)
Q Consensus 302 -----------------~--~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~ 362 (799)
. +.....++.+|+.|+..+||||||||||.+..... ....+..|++.||+.
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds----------~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES----------NYLSLGLLVNSLSRD 1764 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc----------ceehHHHHHHHhccc
Confidence 0 11122478899999999999999999999985311 012367778888865
Q ss_pred ccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH--HHHHHHhhcCC
Q 003743 363 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE--ILLDVASKCDG 440 (799)
Q Consensus 363 ~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~--~l~~la~~~~g 440 (799)
... +....|+||||||+|+.+||||+|||||++.|.++.|+..+|.+++..++..+++.+.++ .++.+|..|.|
T Consensus 1765 ~~~----~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1765 CER----CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred ccc----CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence 321 122359999999999999999999999999999999999999999987665555555433 37899999999
Q ss_pred CChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 441 YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 441 ~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
|+|+||.++|++|+..|+.+ .+..+..+++..|+++.+..
T Consensus 1841 fSGADLanLvNEAaliAirq-----------~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1841 SNARDLVALTNEALSISITQ-----------KKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred CCHHHHHHHHHHHHHHHHHc-----------CCCccCHHHHHHHHHHHHhh
Confidence 99999999999999999876 23567888899998877543
No 73
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-27 Score=239.86 Aligned_cols=244 Identities=19% Similarity=0.310 Sum_probs=193.0
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
-+|+.+.|+..+..++++.+..-+. .+.+|.+.|+.+|.+++||||||||||.+|+++|..++ .+++.+..+
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~--np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg------~nfl~v~ss 200 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLT--NPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG------VNFLKVVSS 200 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeecc--CchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC------CceEEeeHh
Confidence 3689999999998888887765555 77899999999999999999999999999999999999 889999999
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCE
Q 003743 296 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 375 (799)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v 375 (799)
.+...+.|+....+++.|..|....|||||+||||+..+.+ ..++..... .+...|.++++++.... ..++|
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr-~se~Ts~dr---eiqrTLMeLlnqmdgfd----~l~rV 272 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR-FSEGTSSDR---EIQRTLMELLNQMDGFD----TLHRV 272 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE-eccccchhH---HHHHHHHHHHHhhccch----hcccc
Confidence 99999999999999999999999999999999999998655 333333333 44455555444433221 23469
Q ss_pred EEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 376 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 376 ~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
-+|+|||+++.|+|+|+||||+++.+++|.|+...|..|++.+.+..... .+-..+.+.+..+||+++|+++.|.+|-+
T Consensus 273 k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~f~gad~rn~~tEag~ 351 (388)
T KOG0651|consen 273 KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-GEIDDEAILKLVDGFNGADLRNVCTEAGM 351 (388)
T ss_pred cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccc-ccccHHHHHHHHhccChHHHhhhcccccc
Confidence 99999999999999999999999999999999999999888554432211 11126678888999999999999988875
Q ss_pred HHhcccccCCCcccccccccceecccchhccc
Q 003743 456 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 456 ~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
.++.. ....+..+||..+..+
T Consensus 352 Fa~~~-----------~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 352 FAIPE-----------ERDEVLHEDFMKLVRK 372 (388)
T ss_pred cccch-----------hhHHHhHHHHHHHHHH
Confidence 55432 1233556677665544
No 74
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=3.3e-25 Score=233.86 Aligned_cols=228 Identities=15% Similarity=0.177 Sum_probs=166.9
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|+++.|---+.....+++..-+. ..+....++++|++++||||||||||++|+++|++++ .+++.++.
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~---kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa 181 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIA---KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSA 181 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHH---hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEH
Confidence 34566664433333344444432222 2233346789999999999999999999999999999 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHh-----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC--
Q 003743 295 SRLSLEKGPIIRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK-- 367 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~-- 367 (799)
.++...+.|+....++++|..|.. ..||||||||||++++.+.. .+.......+...|++++|+......
T Consensus 182 ~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~---~~~tv~~qiV~~tLLnl~D~p~~v~l~G 258 (413)
T PLN00020 182 GELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT---TQYTVNNQMVNGTLMNIADNPTNVSLGG 258 (413)
T ss_pred HHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC---CCcchHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999864 46999999999999976642 22222233445788888886421100
Q ss_pred ---CccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCC----
Q 003743 368 ---SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG---- 440 (799)
Q Consensus 368 ---~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g---- 440 (799)
.......|.||+|||+++.|||+|+|||||+..+ ..|+.++|.+|++.+++..++ +...+..++..+.|
T Consensus 259 ~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq~~D 334 (413)
T PLN00020 259 DWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQPLD 334 (413)
T ss_pred cccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCCCch
Confidence 0112346999999999999999999999999754 589999999999999988654 56778888888766
Q ss_pred CChhhHHHHHHHHHHHHh
Q 003743 441 YDAYDLEILVDRTVHAAV 458 (799)
Q Consensus 441 ~s~~dl~~lv~~A~~~a~ 458 (799)
|.++--..+.++++..-+
T Consensus 335 f~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 335 FFGALRARVYDDEVRKWI 352 (413)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 344444455555544433
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=2.3e-25 Score=261.79 Aligned_cols=250 Identities=21% Similarity=0.274 Sum_probs=201.2
Q ss_pred CCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEE
Q 003743 212 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF 291 (799)
Q Consensus 212 ~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~ 291 (799)
......|.++.|.+..++++.+.+.. +. .+..|...+...++++||+||||||||++++++|++++ .+++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~--~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~ 215 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LR--EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFT 215 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hh--CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEE
Confidence 34567789999999988887765544 32 34566777888889999999999999999999999998 78888
Q ss_pred EecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccC
Q 003743 292 VCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 371 (799)
Q Consensus 292 v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~ 371 (799)
++++++.....+.....++.+|..+....|+||||||+|.+...+....+ +.......+++.|+..+|++....
T Consensus 216 is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~-g~~~~~~~~ln~lL~~mdg~~~~~----- 289 (644)
T PRK10733 216 ISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG-GGHDEREQTLNQMLVEMDGFEGNE----- 289 (644)
T ss_pred EehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCC-CCchHHHHHHHHHHHhhhcccCCC-----
Confidence 99988776666666677888999998889999999999999866544222 222333466777778888775432
Q ss_pred CCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHH
Q 003743 372 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 451 (799)
Q Consensus 372 ~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~ 451 (799)
.+++|+|||+++.+|++++|||||+++|.|+.|+.++|.+|++.++....+.. +..+..+++.+.||+++||.++|+
T Consensus 290 --~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 290 --GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred --CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999988765432 233778999999999999999999
Q ss_pred HHHHHHhcccccCCCcccccccccceecccchhcccccc
Q 003743 452 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 490 (799)
Q Consensus 452 ~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p 490 (799)
+|+..|.++ ....++.+||..++..+.+
T Consensus 367 eAa~~a~r~-----------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 367 EAALFAARG-----------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHHc-----------CCCcccHHHHHHHHHHHhc
Confidence 999887654 2356788898888776543
No 76
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.5e-25 Score=237.30 Aligned_cols=259 Identities=18% Similarity=0.230 Sum_probs=205.8
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
....++++.|++.++..+.+.+...+. ++..|...- ++.+++||.||||+|||+|++++|.+.+ +.+..+.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~l--r~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~------atff~iS 218 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLL--RPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG------ATFFNIS 218 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhccc--chHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc------ceEeecc
Confidence 345688999999999988886644443 556666533 4567899999999999999999999999 8899999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++.+...+.|+.+..++.+|.-|+..+|+|+||||+|.++..|.+.+..... .+...++-.+++..... ..
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~sr----r~ktefLiq~~~~~s~~-----~d 289 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSR----RLKTEFLLQFDGKNSAP-----DD 289 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccch----hhhhHHHhhhccccCCC-----CC
Confidence 9999999999999999999999999999999999999999888554433222 33333333344443322 23
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+|++|+|||.|+.+|++++| ||..++++|.|+.+.|..+|.+++...+..+.+..++.+++.++||++.|+..+|..|
T Consensus 290 rvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred eEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 69999999999999999999 9999999999999999999999999887888888899999999999999999999999
Q ss_pred HHHHhcccccC--CCcccccccccceecccchhcccccccc
Q 003743 454 VHAAVGRYLHS--DSSFEKHIKPTLVRDDFSQAMHEFLPVA 492 (799)
Q Consensus 454 ~~~a~~r~~~~--~~~~~~~~~~~l~~edf~~al~~~~p~~ 492 (799)
++.-.+..... -........+.++..||..++..+.|..
T Consensus 368 ~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 368 AMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred hcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 86554443321 1122333446677778887777665543
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=7.3e-22 Score=210.11 Aligned_cols=215 Identities=18% Similarity=0.292 Sum_probs=166.4
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCC---CCceeeecCCCCcHHHHHHHHHHhC-------CCeEEEEeccc
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRL---RSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGPE 578 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vLL~GppGtGKT~la~alA~~~-------~~~~i~i~~~~ 578 (799)
.+++|++++|+.+.+++.+ ...++.....|+.+ +.++||+||||||||++|+++|..+ ..+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999998876 34456666666543 3469999999999999999999875 23699999999
Q ss_pred hhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc-
Q 003743 579 LLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL- 657 (799)
Q Consensus 579 l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~- 657 (799)
+.+.|+|.++..+..+|+.|.. +||||||+|.+...++ .......+++.|+..|+. ....++||++++...+
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN--QRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 9999999998888889988754 4999999999975432 334567889999999974 3355777777764322
Q ss_pred ----cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC--CcccHHHHHHH------CCCCc-HHHHHHHHHHHH
Q 003743 658 ----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA--DDVDLEAIAHM------TEGFS-GADLQALLSDAQ 724 (799)
Q Consensus 658 ----ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~--~~~~~~~la~~------~~g~s-g~di~~~~~~a~ 724 (799)
++|++++ ||+..|+|++|+.+++.+|++.++.+.... .+. ...+... ...|. ++++++++..|.
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 4699999 999999999999999999999998865433 222 2333322 13345 899999999999
Q ss_pred HHHHHHHhcc
Q 003743 725 LSAVHEILNN 734 (799)
Q Consensus 725 ~~a~~~~~~~ 734 (799)
.....|....
T Consensus 252 ~~~~~r~~~~ 261 (287)
T CHL00181 252 MRQANRIFES 261 (287)
T ss_pred HHHHHHHHcC
Confidence 8888887753
No 78
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=2.1e-21 Score=206.89 Aligned_cols=215 Identities=18% Similarity=0.242 Sum_probs=167.5
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCC---CCCceeeecCCCCcHHHHHHHHHHhCC-------CeEEEEeccch
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISVKGPEL 579 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~vLL~GppGtGKT~la~alA~~~~-------~~~i~i~~~~l 579 (799)
+++|++++|+.+.+++.+ ...++.+...|+. +..++||+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998887 5566777777765 345899999999999999999998662 37999999999
Q ss_pred hhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC--Cc
Q 003743 580 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP--DL 657 (799)
Q Consensus 580 ~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~--~~ 657 (799)
.+.|+|.++..+.++|+.|.. +||||||+|.+.+.+. .......+++.|+..|+. ....++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHH
Confidence 999999998889999998754 5999999999965432 334567888999999973 34567777776643 22
Q ss_pred ---cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHH-------CCCCcHHHHHHHHHHHHHH
Q 003743 658 ---LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHM-------TEGFSGADLQALLSDAQLS 726 (799)
Q Consensus 658 ---ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~-------~~g~sg~di~~~~~~a~~~ 726 (799)
++|++.+ ||+..|+||+|+.+++.+|++.++++.... .+.....+..+ ..--+++++++++..+...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 5899999 999999999999999999999999876432 22223344443 1113479999999999887
Q ss_pred HHHHHhcc
Q 003743 727 AVHEILNN 734 (799)
Q Consensus 727 a~~~~~~~ 734 (799)
...|....
T Consensus 253 ~~~r~~~~ 260 (284)
T TIGR02880 253 QANRLFCD 260 (284)
T ss_pred HHHHHhcC
Confidence 77777653
No 79
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.7e-21 Score=207.81 Aligned_cols=204 Identities=19% Similarity=0.290 Sum_probs=164.2
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhc
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 585 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g 585 (799)
..|+.++--.+.|+.+.+-+...++..+.+.+.|.++.+|.|||||||||||+++.|+|+.++..++.++.+++ +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----K 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----c
Confidence 77888888899999999999999999999999999999999999999999999999999999999999998774 3
Q ss_pred ccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC------C-chhhHHHHHHHhhccCccccC--cEEEEEecCCCC
Q 003743 586 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN------T-GVTDRVVNQFLTELDGVEVLT--GVFVFAATSRPD 656 (799)
Q Consensus 586 ~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~------~-~~~~r~~~~ll~~ld~~~~~~--~vlvi~ttn~~~ 656 (799)
...+ ++.++..+... +||+|++||+-+.-++... . ....-.++.||..+||+-... -.+||.|||+++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 3334 88888877655 5999999999765332211 1 123356888999999997654 678888999999
Q ss_pred ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCc--ccHHHHHHHCCCCcHHHHHHH
Q 003743 657 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADD--VDLEAIAHMTEGFSGADLQAL 719 (799)
Q Consensus 657 ~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~--~~~~~la~~~~g~sg~di~~~ 719 (799)
.|||||+||||+|.+|+++..+.++...+++.++..-. +.. -+++.+..-+. .|+||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHHHHhhcCc-cCHHHHHHH
Confidence 99999999999999999999999999999998886532 111 11233333344 688887653
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=3.3e-21 Score=203.74 Aligned_cols=215 Identities=17% Similarity=0.232 Sum_probs=159.6
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCC---CCCceeeecCCCCcHHHHHHHHHHhC-------CCeEEEEecc
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGP 577 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~vLL~GppGtGKT~la~alA~~~-------~~~~i~i~~~ 577 (799)
+++++|++++|+.+++++.++... ......|.. ...+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567899999999999998876443 222234443 34579999999999999999999864 3478999999
Q ss_pred chhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCC-
Q 003743 578 ELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD- 656 (799)
Q Consensus 578 ~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~- 656 (799)
++.+.|+|++...++++|+.|.. +||||||+|.|... .........++.|+..|+.. ...+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC---CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchh
Confidence 99999999999999999988753 59999999999642 12233467788899888743 34455555544322
Q ss_pred ----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHC---------CCCcHHHHHHHHHH
Q 003743 657 ----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT---------EGFSGADLQALLSD 722 (799)
Q Consensus 657 ----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~---------~g~sg~di~~~~~~ 722 (799)
.++|++++ ||+..++||+|+.+++.+|++.++....+. .+..+..|+... ..-+++.+++++..
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 27889999 999999999999999999999998866442 222233443221 12357888888888
Q ss_pred HHHHHHHHHhc
Q 003743 723 AQLSAVHEILN 733 (799)
Q Consensus 723 a~~~a~~~~~~ 733 (799)
|......+.+.
T Consensus 234 a~~~~~~r~~~ 244 (261)
T TIGR02881 234 AIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHhc
Confidence 88777777665
No 81
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.6e-22 Score=201.28 Aligned_cols=235 Identities=23% Similarity=0.327 Sum_probs=175.3
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCC-CCCCCceeeecCCCCcHHHHHHHHHHhCC---------CeEEEEec
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKG 576 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~alA~~~~---------~~~i~i~~ 576 (799)
-|+.++--..+|+.|..+....+...+...... +...+-+||+||||||||++++|+|+.+. ..++++|+
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 477777667788888887765544433222211 23456699999999999999999999874 46899999
Q ss_pred cchhhhhhcccHHHHHHHHHHhHh-----cCCeEEEEcccccccCCCCC----CCCchhhHHHHHHHhhccCccccCcEE
Q 003743 577 PELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGH----DNTGVTDRVVNQFLTELDGVEVLTGVF 647 (799)
Q Consensus 577 ~~l~~~~~g~se~~i~~~f~~a~~-----~~p~ILfiDEid~l~~~r~~----~~~~~~~r~~~~ll~~ld~~~~~~~vl 647 (799)
..++++|++++.+.+..+|++... +.-..++|||+++|+..|.. .+....-|++|.+|++||.+++.++|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999988743 22245679999999877732 334556799999999999999999999
Q ss_pred EEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC---CC--CC-------------cccHHHHHHH-C
Q 003743 648 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL---PL--AD-------------DVDLEAIAHM-T 708 (799)
Q Consensus 648 vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~---~~--~~-------------~~~~~~la~~-~ 708 (799)
+++|+|-.+.+|.|+.. |-|-+.++++|+...+++|++..+.++ ++ .. +.....+... +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 999999999999999999999876543 11 11 1112233333 4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 709 EGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 709 ~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
.|.||+-|+++=--|. ... .....|+.++|..|+.
T Consensus 378 ~gLSGRtlrkLP~Lah----a~y---------~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAH----AEY---------FRTFTVDLSNFLLALL 412 (423)
T ss_pred cCCccchHhhhhHHHH----Hhc---------cCCCccChHHHHHHHH
Confidence 8999999887632221 111 1124678887776654
No 82
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=2.2e-20 Score=197.50 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=161.1
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCC---CCceEEEECCCCCcHHHHHHHHHHHhccCC-ceeeEEEEE
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLP---LPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFV 292 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~---~~~~vLL~GppGtGKT~la~alA~~l~~~~-~~~~~~~~v 292 (799)
.+++++|++++|+.|.+.+....- .......|+. ...++||+||||||||++|+++|+.+.... ....+++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~---~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQI---NEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHH---HHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 467899999999988766533221 1222333443 346899999999999999999999875322 223467888
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 293 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 293 ~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
+++++.+.+.+.....+..+|..+ .++||||||+|.+... .+ ..........|+..++....
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~---~~----~~~~~~~i~~Ll~~~e~~~~-------- 142 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLARG---GE----KDFGKEAIDTLVKGMEDNRN-------- 142 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhc---cCCEEEEechhhhccC---Cc----cchHHHHHHHHHHHHhccCC--------
Confidence 999988887777777777887765 3579999999999621 10 11112445667776665432
Q ss_pred CCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhc---------
Q 003743 373 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC--------- 438 (799)
Q Consensus 373 ~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~--------- 438 (799)
.+++|++++..+ .++|++++ ||+.+|.||+++.+++.+|++.++...+..++++++..++...
T Consensus 143 -~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 143 -EFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred -CEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC
Confidence 356666554322 36789999 9998999999999999999999999888889999887775432
Q ss_pred CCCChhhHHHHHHHHHHHHhccccc
Q 003743 439 DGYDAYDLEILVDRTVHAAVGRYLH 463 (799)
Q Consensus 439 ~g~s~~dl~~lv~~A~~~a~~r~~~ 463 (799)
...+++.+++++..|......|.+.
T Consensus 220 ~~gn~R~~~n~~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 220 EFSNARYVRNIIEKAIRRQAVRLLD 244 (261)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhc
Confidence 2346888999999988887777653
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=8.2e-21 Score=178.86 Aligned_cols=130 Identities=43% Similarity=0.724 Sum_probs=117.8
Q ss_pred eeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcC-CeEEEEcccccccCCCCCCCCc
Q 003743 546 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTG 624 (799)
Q Consensus 546 vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~-p~ILfiDEid~l~~~r~~~~~~ 624 (799)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.+.+.+..+|..++... |+||||||+|.+.+........
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998899999999999999998887 9999999999999887445566
Q ss_pred hhhHHHHHHHhhccCcccc-CcEEEEEecCCCCccChhhcCCCCcceeeecCC
Q 003743 625 VTDRVVNQFLTELDGVEVL-TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF 676 (799)
Q Consensus 625 ~~~r~~~~ll~~ld~~~~~-~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~ 676 (799)
...++++.|+..++..... .+++||+|||.++.++++++| +||+..++||.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 6788999999999887765 569999999999999999997 79999999874
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=5.1e-20 Score=196.00 Aligned_cols=223 Identities=16% Similarity=0.164 Sum_probs=159.9
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCC---CceEEEECCCCCcHHHHHHHHHHHhccCCc-eeeEEEEEec
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPL---PGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCC 294 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~---~~~vLL~GppGtGKT~la~alA~~l~~~~~-~~~~~~~v~~ 294 (799)
.+++|++.+|++|.+.+.... ....+...|++. +.++||+||||||||++|+++|+.+..... ...+++.+++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~---~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~ 99 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL---IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR 99 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence 478999999998887653322 223444556543 346999999999999999999998763322 2245788888
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+++.+.+.+........++..+ .++||||||+|.+...+.. . .........|+..|+... ..
T Consensus 100 ~~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~--~----~~~~e~~~~L~~~me~~~---------~~ 161 (287)
T CHL00181 100 DDLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE--R----DYGSEAIEILLQVMENQR---------DD 161 (287)
T ss_pred HHHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc--c----chHHHHHHHHHHHHhcCC---------CC
Confidence 8877666665555556666654 4579999999999642211 1 112356677777776532 13
Q ss_pred EEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhh----c--CCC-C
Q 003743 375 IAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK----C--DGY-D 442 (799)
Q Consensus 375 v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~----~--~g~-s 442 (799)
++||++++... .++|+|.+ ||+.+|.|++|+.+++.+|+..++...+..++++....+... . ..+ +
T Consensus 162 ~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GN 239 (287)
T CHL00181 162 LVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFAN 239 (287)
T ss_pred EEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCcc
Confidence 67777765421 24699999 999999999999999999999999998888888776555443 1 223 5
Q ss_pred hhhHHHHHHHHHHHHhcccccC
Q 003743 443 AYDLEILVDRTVHAAVGRYLHS 464 (799)
Q Consensus 443 ~~dl~~lv~~A~~~a~~r~~~~ 464 (799)
++++++++++++.....|....
T Consensus 240 aR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 240 ARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999998888887644
No 85
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.84 E-value=4.4e-20 Score=195.04 Aligned_cols=231 Identities=20% Similarity=0.298 Sum_probs=162.8
Q ss_pred CCCCCCCCCChHHHHH---HHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 504 GRSGWDDVGGLTDIQN---AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.+..+++++|++++.. .|...+.. ....+++|||||||||||+|+++|...+.+|..+++..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 3467888999887652 33333332 12238999999999999999999999999999999843
Q ss_pred hhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCC
Q 003743 581 NKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 656 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~ 656 (799)
.+-+.++.+++.|+. +...||||||||++... -+..||-.| +.+.-++|-+||.+|+
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-----------QQD~lLp~v---E~G~iilIGATTENPs 144 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-----------QQDALLPHV---ENGTIILIGATTENPS 144 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-----------hhhhhhhhh---cCCeEEEEeccCCCCC
Confidence 456789999999954 23479999999998543 233455444 6666777778888888
Q ss_pred c-cChhhcCCCCcceeeecCCCCHHHHHHHHHHHH--ccCCCC------CcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 003743 657 L-LDAALLRPGRLDRLLFCDFPSPRERLDILKVIS--RKLPLA------DDVDLEAIAHMTEGFSGADLQALLSDAQLSA 727 (799)
Q Consensus 657 ~-ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~------~~~~~~~la~~~~g~sg~di~~~~~~a~~~a 727 (799)
. +.+|+++++ +++.+.+.+.++..++++..+ ...++. ++...+.|+..++ +|.+.+++..-
T Consensus 145 F~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN~LE--- 214 (436)
T COG2256 145 FELNPALLSRA---RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALNLLE--- 214 (436)
T ss_pred eeecHHHhhhh---heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHHHHH---
Confidence 7 999999944 567889999999999998732 233333 1223445555544 68887776332
Q ss_pred HHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 003743 728 VHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAA 786 (799)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 786 (799)
......+. .. .++.+.+++.++...+ ..++.-+.+|++.+.|++|.|+.++
T Consensus 215 --~~~~~~~~----~~-~~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 215 --LAALSAEP----DE-VLILELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred --HHHHhcCC----Cc-ccCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCc
Confidence 22221111 11 4458889888876544 4556667799999999999998764
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=6.2e-20 Score=195.53 Aligned_cols=222 Identities=16% Similarity=0.167 Sum_probs=163.1
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCC---CceEEEECCCCCcHHHHHHHHHHHhccCCce-eeEEEEEecc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPL---PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVCCS 295 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~---~~~vLL~GppGtGKT~la~alA~~l~~~~~~-~~~~~~v~~s 295 (799)
+++|++++|+.|.+.+.... ....+...|+.. +.++||+||||||||++|+++|+.+...... ..+++.++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~---~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLL---VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHH---HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 68999999999887654432 333455566653 4589999999999999999999998643322 2468888888
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCE
Q 003743 296 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 375 (799)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v 375 (799)
++.+...+.....+..+|..+ .+++|||||+|.+.+.+.. ..........|+..|+... ..+
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~~---------~~~ 161 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQR---------DDL 161 (284)
T ss_pred HHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcCC---------CCE
Confidence 876655555555566677665 4589999999998632111 1112355667777776532 247
Q ss_pred EEEEecCCC--C---ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhh-------cCCCCh
Q 003743 376 AFVASAQSL--E---KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 443 (799)
Q Consensus 376 ~vI~ttn~~--~---~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~-------~~g~s~ 443 (799)
++|++++.. + .++|+|.+ ||+..|+||+++.+++.+|+..++......++++.+..+..+ ....++
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 777776542 2 24799999 999999999999999999999999998888888888777665 233478
Q ss_pred hhHHHHHHHHHHHHhcccccC
Q 003743 444 YDLEILVDRTVHAAVGRYLHS 464 (799)
Q Consensus 444 ~dl~~lv~~A~~~a~~r~~~~ 464 (799)
+++++++++++.....|+...
T Consensus 240 R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998888887643
No 87
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.3e-19 Score=186.60 Aligned_cols=207 Identities=25% Similarity=0.383 Sum_probs=151.6
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhc-
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG- 585 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g- 585 (799)
.+++++-...+...+.++....... . ....+-+++|||||||||||++|+-||...|+.+-.+.+.++.- .|
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNT-K----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP--lG~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANT-K----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP--LGA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccc-c----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc--cch
Confidence 3666666666666666654422111 1 11234468999999999999999999999999999998888643 23
Q ss_pred ccHHHHHHHHHHhHhcC-CeEEEEcccccccCCCCCCCC-chhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhc
Q 003743 586 ASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNT-GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 663 (799)
Q Consensus 586 ~se~~i~~~f~~a~~~~-p~ILfiDEid~l~~~r~~~~~-~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~ 663 (799)
+.-..|+++|.-++... .-+|||||+|.+...|....- ......+|.||---- .....++++.+||+|..+|.|+-
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~ 503 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVN 503 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHH
Confidence 33467999999996543 358999999999888765432 334456777764221 23345777789999999999999
Q ss_pred CCCCcceeeecCCCCHHHHHHHHHHHHccCCCCC-----------------------c----ccHHHHHHHCCCCcHHHH
Q 003743 664 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD-----------------------D----VDLEAIAHMTEGFSGADL 716 (799)
Q Consensus 664 r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----------------------~----~~~~~la~~~~g~sg~di 716 (799)
. |+|.+|+||+|..++|..|+..++.++-... . --....|+.++||||++|
T Consensus 504 D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 504 D--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred h--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 9 9999999999999999999998876552110 0 114677899999999999
Q ss_pred HHHHHHHH
Q 003743 717 QALLSDAQ 724 (799)
Q Consensus 717 ~~~~~~a~ 724 (799)
.+++...+
T Consensus 582 akLva~vQ 589 (630)
T KOG0742|consen 582 AKLVASVQ 589 (630)
T ss_pred HHHHHHHH
Confidence 99876543
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=6e-19 Score=175.70 Aligned_cols=196 Identities=17% Similarity=0.267 Sum_probs=130.3
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..+++++|.+..++.+.-.+....... ....|+|||||||+||||||+.+|++++ .++..++.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~----------~~l~h~lf~GPPG~GKTTLA~IIA~e~~------~~~~~~sg 83 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRG----------EALDHMLFYGPPGLGKTTLARIIANELG------VNFKITSG 83 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTT----------S---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEEC
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcC----------CCcceEEEECCCccchhHHHHHHHhccC------CCeEeccc
Confidence 6789999999988877655444433211 2346899999999999999999999999 66666666
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----ccC--
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRK-- 367 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~-----~~~-- 367 (799)
..+.. .+. +..++... ....||||||||++.. ...+.|+..|+.+.- ...
T Consensus 84 ~~i~k--~~d----l~~il~~l--~~~~ILFIDEIHRlnk---------------~~qe~LlpamEd~~idiiiG~g~~a 140 (233)
T PF05496_consen 84 PAIEK--AGD----LAAILTNL--KEGDILFIDEIHRLNK---------------AQQEILLPAMEDGKIDIIIGKGPNA 140 (233)
T ss_dssp CC--S--CHH----HHHHHHT----TT-EEEECTCCC--H---------------HHHHHHHHHHHCSEEEEEBSSSSS-
T ss_pred hhhhh--HHH----HHHHHHhc--CCCcEEEEechhhccH---------------HHHHHHHHHhccCeEEEEecccccc
Confidence 44322 222 33334443 4567999999999962 567788888886441 110
Q ss_pred --CccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhh
Q 003743 368 --SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYD 445 (799)
Q Consensus 368 --~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~d 445 (799)
......++.+|++|+....+.++|+. ||....++..|+.+|..+|+.+.....++.++++...+++..+.| +++-
T Consensus 141 r~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRi 217 (233)
T PF05496_consen 141 RSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRI 217 (233)
T ss_dssp BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHH
T ss_pred ceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHH
Confidence 11223468999999999999999999 999888999999999999999999999999999999999999988 5654
Q ss_pred HHHHHHH
Q 003743 446 LEILVDR 452 (799)
Q Consensus 446 l~~lv~~ 452 (799)
..+++++
T Consensus 218 Anrll~r 224 (233)
T PF05496_consen 218 ANRLLRR 224 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 89
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=7.8e-19 Score=174.90 Aligned_cols=187 Identities=25% Similarity=0.369 Sum_probs=125.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
.+..+++++|+++++..+.-++...... -.+..++|||||||+|||++|+.+|++++.++..++++.+.
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~--- 87 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE--- 87 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-----
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh---
Confidence 3468999999999999987766532111 12234899999999999999999999999999999886542
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc----------------cCcEE
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV----------------LTGVF 647 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~----------------~~~vl 647 (799)
....+..++.... ...||||||||++. ......|+..|+...- ..++.
T Consensus 88 ---k~~dl~~il~~l~--~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 88 ---KAGDLAAILTNLK--EGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ---SCHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ---hHHHHHHHHHhcC--CCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1234555555543 34699999999994 4456667777754321 12588
Q ss_pred EEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHH
Q 003743 648 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALL 720 (799)
Q Consensus 648 vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~ 720 (799)
+|++|++...+.++|+. ||..+..+.+|+.++..+|++.....+++. .+-....||..+.| +++-...++
T Consensus 152 ligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll 222 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLL 222 (233)
T ss_dssp EEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHH
T ss_pred EeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHH
Confidence 99999999999999999 999999999999999999999988877765 34446788988886 555444443
No 90
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.1e-18 Score=179.39 Aligned_cols=215 Identities=17% Similarity=0.257 Sum_probs=146.3
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+.++..|+.......+|. +|...-.+. ...-.+-|+||||||||||||++|+-||...+ ..+-....
T Consensus 351 k~pl~~ViL~psLe~Rie-~lA~aTaNT------K~h~apfRNilfyGPPGTGKTm~ArelAr~SG------lDYA~mTG 417 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIE-DLAIATANT------KKHQAPFRNILFYGPPGTGKTMFARELARHSG------LDYAIMTG 417 (630)
T ss_pred CCCcCCeecCHHHHHHHH-HHHHHhccc------ccccchhhheeeeCCCCCCchHHHHHHHhhcC------CceehhcC
Confidence 556777777655555444 342222211 11233457899999999999999999999988 22222333
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCc-EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPS-IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~-IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.++..- +...-..|+.+|.++.....+ +|||||+|.++..|....-+ . .....|..++-...... .
T Consensus 418 GDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymS---E---aqRsaLNAlLfRTGdqS------r 484 (630)
T KOG0742|consen 418 GDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMS---E---AQRSALNALLFRTGDQS------R 484 (630)
T ss_pred CCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhc---H---HHHHHHHHHHHHhcccc------c
Confidence 333221 233445799999999876655 78899999999766654322 2 22233333333222211 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc----------------------cC----CC
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS----------------------LE----CS 427 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~----------------------~~----~~ 427 (799)
+++++.+||.|.++|.++-. ||+.+|+||.|..+||..++..|+.+.- +. ..
T Consensus 485 divLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t 562 (630)
T KOG0742|consen 485 DIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDT 562 (630)
T ss_pred ceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchH
Confidence 58999999999999999999 9999999999999999999998876431 11 23
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 428 DEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 428 ~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
+..+.+.+..++||+|++|..|+-.....+
T Consensus 563 ~~~~~EaAkkTeGfSGREiakLva~vQAav 592 (630)
T KOG0742|consen 563 GRKCSEAAKKTEGFSGREIAKLVASVQAAV 592 (630)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 445888999999999999999876544333
No 91
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=3.7e-18 Score=160.68 Aligned_cols=131 Identities=30% Similarity=0.479 Sum_probs=111.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcC-CcEEEEccccccccCC
Q 003743 258 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSS 336 (799)
Q Consensus 258 vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~-p~IL~IDEiD~l~~~~ 336 (799)
+||+||||||||++|+.+|+.++ .+++.+++..+.....+.....+..+|..+.... |+||||||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------cccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999999999999998 8899999999987778888889999999998777 9999999999999654
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccC
Q 003743 337 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA 405 (799)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~ 405 (799)
..........+.+.|+..++...... .++++|+|||.++.++++++| +||+..|++|.
T Consensus 75 ----~~~~~~~~~~~~~~L~~~l~~~~~~~------~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 75 ----QPSSSSFEQRLLNQLLSLLDNPSSKN------SRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp ----STSSSHHHHHHHHHHHHHHHTTTTTS------SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ----ccccccccccccceeeeccccccccc------ccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 12234445577888888888776542 259999999999999999997 79999998873
No 92
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.6e-18 Score=175.61 Aligned_cols=249 Identities=20% Similarity=0.215 Sum_probs=174.7
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC---CceeeEEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDLVAHIV 290 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~---~~~~~~~~ 290 (799)
+...|++++-..+.|+++.......+-- +..-....-+.+.|-+||+||||||||+|++++|+.+.-. ......++
T Consensus 137 F~glWEsLiyds~lK~~ll~Ya~s~l~f-sek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 137 FDGLWESLIYDSNLKERLLSYAASALLF-SEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hhhhHHHHhhcccHHHHHHHHHHHHHHH-HhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 4566888888899999998877443321 1111223345678899999999999999999999998732 33446789
Q ss_pred EEecccccccchhhHHHHHHHHHHHHHh---cCC--cEEEEccccccccCCCC-CCCCCCchhHHHHHHHHHHHHHHhcc
Q 003743 291 FVCCSRLSLEKGPIIRQALSNFISEALD---HAP--SIVIFDNLDSIISSSSD-PEGSQPSTSVIALTKFLVDIMDEYGE 364 (799)
Q Consensus 291 ~v~~s~l~~~~~~~~~~~l~~~~~~a~~---~~p--~IL~IDEiD~l~~~~~~-~~~~~~~~~~~~l~~~Ll~~ld~~~~ 364 (799)
++|+..+...+.++..+.+..+|+...+ ... ..++|||+++++..|.. ..+..+. ..-++.+.++..+|.+..
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~Eps-DaIRvVNalLTQlDrlK~ 294 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPS-DAIRVVNALLTQLDRLKR 294 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHHHHhcc
Confidence 9999999988888877777777776643 222 25779999999866532 2222233 334788889999998876
Q ss_pred ccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhc---ccCCC--------------
Q 003743 365 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---SLECS-------------- 427 (799)
Q Consensus 365 ~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~---~~~~~-------------- 427 (799)
.. +|++.+|+|-.+.+|.|+.. |-|-+.++++|+...+.+|++.++.+. ++-+.
T Consensus 295 ~~-------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~ 365 (423)
T KOG0744|consen 295 YP-------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQ 365 (423)
T ss_pred CC-------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhh
Confidence 43 59999999999999999999 999999999999999999999876532 11111
Q ss_pred HHHHHHHHhh-cCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcc
Q 003743 428 DEILLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 486 (799)
Q Consensus 428 ~~~l~~la~~-~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~ 486 (799)
+.....+... +.|.+|+-|+.+---|. ..+.+ .++++.++|..++.
T Consensus 366 ~~~~~~~~~~~~~gLSGRtlrkLP~Lah-a~y~~------------~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 366 KALRNILIELSTVGLSGRTLRKLPLLAH-AEYFR------------TFTVDLSNFLLALL 412 (423)
T ss_pred HhHHHHHHHHhhcCCccchHhhhhHHHH-HhccC------------CCccChHHHHHHHH
Confidence 1112222332 37889998887754433 22211 15677777776654
No 93
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.9e-18 Score=188.55 Aligned_cols=253 Identities=19% Similarity=0.273 Sum_probs=178.4
Q ss_pred hhccccceeeEEEEecccccccCCCCCceeeeeeccccCCCCHHHHHHHHhcCCCCCceEEEEeeecCccCCCCCccccc
Q 003743 142 TKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSL 221 (799)
Q Consensus 142 ~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l 221 (799)
.+..+..+=..||.++ ..|.|..+.....++..+++.+.+-++|
T Consensus 284 ~~SaE~~ViRnYlDwl------------l~lPW~~~sk~~~Dl~~a~~iLd~dHYG------------------------ 327 (782)
T COG0466 284 PMSAEATVIRNYLDWL------------LDLPWGKRSKDKLDLKKAEKILDKDHYG------------------------ 327 (782)
T ss_pred CCCchHHHHHHHHHHH------------HhCCCccccchhhhHHHHHHHhcccccC------------------------
Confidence 3344444555677777 7889999988888899999998877765
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc----
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL---- 297 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l---- 297 (799)
++.+|++|++.+.+..... --.+.-++|+||||+|||+|++.+|+.++ ..|+.++...+
T Consensus 328 --LekVKeRIlEyLAV~~l~~---------~~kGpILcLVGPPGVGKTSLgkSIA~al~------RkfvR~sLGGvrDEA 390 (782)
T COG0466 328 --LEKVKERILEYLAVQKLTK---------KLKGPILCLVGPPGVGKTSLGKSIAKALG------RKFVRISLGGVRDEA 390 (782)
T ss_pred --chhHHHHHHHHHHHHHHhc---------cCCCcEEEEECCCCCCchhHHHHHHHHhC------CCEEEEecCccccHH
Confidence 8999999999885443211 12245689999999999999999999999 77777765433
Q ss_pred --cc---cchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc------
Q 003743 298 --SL---EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR------ 366 (799)
Q Consensus 298 --~~---~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~------ 366 (799)
.| .+.|.+.+++-+.+..+...+| +++|||||.+.+ +..|+. .+.|++.+|--++..
T Consensus 391 EIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---s~rGDP--------aSALLEVLDPEQN~~F~DhYL 458 (782)
T COG0466 391 EIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---SFRGDP--------ASALLEVLDPEQNNTFSDHYL 458 (782)
T ss_pred HhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccC---CCCCCh--------HHHHHhhcCHhhcCchhhccc
Confidence 32 3456667777777778876676 899999999983 333332 233444444322211
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----------cccCCCHHHHHHHHh
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDVAS 436 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----------~~~~~~~~~l~~la~ 436 (799)
+.......|+||+|+|..+.+|.+|+. |+. .|+++-|+.+|..+|.+.|+-. ..+.++++++..+.+
T Consensus 459 ev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~ 535 (782)
T COG0466 459 EVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIR 535 (782)
T ss_pred cCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHH
Confidence 113345679999999999999999999 987 8999999999999999988632 235678888888776
Q ss_pred hcCCC-ChhhHHHHHHHHHHHHhcccc
Q 003743 437 KCDGY-DAYDLEILVDRTVHAAVGRYL 462 (799)
Q Consensus 437 ~~~g~-s~~dl~~lv~~A~~~a~~r~~ 462 (799)
....- -.+.|+.-+...|+.++...+
T Consensus 536 ~YTREAGVR~LeR~i~ki~RK~~~~i~ 562 (782)
T COG0466 536 YYTREAGVRNLEREIAKICRKAAKKIL 562 (782)
T ss_pred HHhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 53211 134455444444544444433
No 94
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=5.4e-17 Score=164.18 Aligned_cols=239 Identities=20% Similarity=0.268 Sum_probs=172.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
+..|++.+|++.+|++|.-++....... ....|+|||||||.|||++|..+|+++|.++-..+++.+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 4678999999999999998887532222 234589999999999999999999999999998888776
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc----------------ccCcEEE
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFV 648 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~----------------~~~~vlv 648 (799)
+....+..++.....+ +||||||||++.+.. -.-|...|+.+. ...++.+
T Consensus 89 -eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 89 -EKPGDLAAILTNLEEG--DVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -cChhhHHHHHhcCCcC--CeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2344566677666555 599999999996541 122233343321 1236889
Q ss_pred EEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 003743 649 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSA 727 (799)
Q Consensus 649 i~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a 727 (799)
|++|.+..++...|+. ||.....+.+|+.++..+|++...+.+.+. .+.....+|+++.| |++=...+++...-.|
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999988877766 34457789999986 4444444444333222
Q ss_pred HHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhhcCCCch
Q 003743 728 VHEILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFLDSKKSV 784 (799)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~---~~~~~~~~~~~~~~~~f~~~~~~~ 784 (799)
.- .+...|+.+-..+|+....- ....-+...+..+..+|....-+.
T Consensus 232 ~V-----------~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl 280 (332)
T COG2255 232 QV-----------KGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGL 280 (332)
T ss_pred HH-----------hcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccH
Confidence 11 12345777777777766543 344566667777888886665544
No 95
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=6e-17 Score=195.29 Aligned_cols=231 Identities=23% Similarity=0.278 Sum_probs=158.8
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh--------
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 580 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~-------- 580 (799)
.++.|++++++.+.+++...... +.....+++|+||||||||++|+++|+.++.+++.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35789999999999877643211 111234799999999999999999999999999999765432
Q ss_pred -hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC-----c--------cccCcE
Q 003743 581 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-----V--------EVLTGV 646 (799)
Q Consensus 581 -~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~-----~--------~~~~~v 646 (799)
..|+|.....+.+.|..+....| ||||||||++.+....+ ..+.|+..||. + ...+++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 35778877788888888876666 89999999998643211 23455555542 1 112578
Q ss_pred EEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHH-----ccCCCC---CcccHHHHHHHCCCCc----HH
Q 003743 647 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-----RKLPLA---DDVDLEAIAHMTEGFS----GA 714 (799)
Q Consensus 647 lvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~---~~~~~~~la~~~~g~s----g~ 714 (799)
++|+|||.++.+++++++ ||. +|.|+.|+.+++.+|++.++ +..++. -.++.+.+..+..+|+ .+
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R 541 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVR 541 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCCh
Confidence 999999999999999999 995 78999999999999998765 222332 1344445544443344 46
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC-CCCCCCCcccHHHHHHHHhh
Q 003743 715 DLQALLSDAQLSAVHEILNNIDS-NEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 715 di~~~~~~a~~~a~~~~~~~~~~-~~~~~~~~it~e~l~~a~~~ 757 (799)
+++..+......+..+.+..... ........|+.++++..+..
T Consensus 542 ~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 542 NLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGK 585 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCc
Confidence 66665555555555554421111 11112357899988887753
No 96
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.73 E-value=2.3e-16 Score=172.47 Aligned_cols=239 Identities=23% Similarity=0.291 Sum_probs=164.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
.+..|++++|.++.++.+...+..... .-.++.++||+||||||||++|+++|++++..+..++++.+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 346799999999999999887753211 113456899999999999999999999999988877765432
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc----------------ccCcEE
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVF 647 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~----------------~~~~vl 647 (799)
....+..++... ..++||||||||.+... ..+.+...|+... ...++.
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 223455555543 34579999999998532 1112233332110 113477
Q ss_pred EEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 003743 648 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLS 726 (799)
Q Consensus 648 vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~ 726 (799)
+|++||++..+++++++ ||...+.|++|+.+++.+|++..+...++. ++..++.|+..+.|.. +.+..+++.+...
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 88999999999999998 999899999999999999999887766554 3334778888888644 6666666654433
Q ss_pred HHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHhhcCCCc
Q 003743 727 AVHEILNNIDSNEPGKMPVITDALLKSIASKARPS---VSEAEKLRLYSIYGQFLDSKKS 783 (799)
Q Consensus 727 a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~---~~~~~~~~~~~~~~~f~~~~~~ 783 (799)
|..+ ....|+.+++..++...... ....+...+..+...|..+.-+
T Consensus 230 a~~~-----------~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 278 (328)
T PRK00080 230 AQVK-----------GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVG 278 (328)
T ss_pred HHHc-----------CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCcee
Confidence 3322 12368999999999876543 3445555555566666655433
No 97
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.1e-16 Score=161.82 Aligned_cols=199 Identities=19% Similarity=0.307 Sum_probs=146.7
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..|.+.+|.+.+++.+.=.++..-.. -...-|+|||||||.||||||+.+|++++ .++...+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r----------~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------vn~k~tsG 85 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR----------GEALDHVLLFGPPGLGKTTLAHIIANELG------VNLKITSG 85 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc----------CCCcCeEEeeCCCCCcHHHHHHHHHHHhc------CCeEeccc
Confidence 667899999987776655444333221 23467899999999999999999999999 33332222
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc---------c
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE---------K 365 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~---------~ 365 (799)
.-+ ...+ .+..++... ...+||||||||++.+ .+-..|...|+.+.- .
T Consensus 86 p~l--eK~g----DlaaiLt~L--e~~DVLFIDEIHrl~~---------------~vEE~LYpaMEDf~lDI~IG~gp~A 142 (332)
T COG2255 86 PAL--EKPG----DLAAILTNL--EEGDVLFIDEIHRLSP---------------AVEEVLYPAMEDFRLDIIIGKGPAA 142 (332)
T ss_pred ccc--cChh----hHHHHHhcC--CcCCeEEEehhhhcCh---------------hHHHHhhhhhhheeEEEEEccCCcc
Confidence 221 1122 244455554 4567999999999973 456677888886651 1
Q ss_pred cCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhh
Q 003743 366 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYD 445 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~d 445 (799)
+.-.....++.+|++|.+...+...|+. ||....++..|+.+|..+|+.+.....++.++++....+++++.| +++=
T Consensus 143 rsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRI 219 (332)
T COG2255 143 RSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRI 219 (332)
T ss_pred ceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHH
Confidence 1112345689999999999999999999 999999999999999999999999999999999999999999888 4554
Q ss_pred HHHHHHHHHH
Q 003743 446 LEILVDRTVH 455 (799)
Q Consensus 446 l~~lv~~A~~ 455 (799)
-..++++..-
T Consensus 220 AnRLLrRVRD 229 (332)
T COG2255 220 ANRLLRRVRD 229 (332)
T ss_pred HHHHHHHHHH
Confidence 4445554443
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=1.1e-16 Score=192.23 Aligned_cols=247 Identities=22% Similarity=0.274 Sum_probs=170.9
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..+++++|.++....+.+.+... ...+++|+||||||||++|+++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 56788999988888776655421 23489999999999999999999986 77899999
Q ss_pred ccchh--hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecC
Q 003743 576 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 576 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
+..+. .+|.|+.+..++.+|+.+....|+||||||+|.+.+.+....+. ..+.+.|...|. .+.+.+|++||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----CCCeEEEEecC
Confidence 98887 57899999999999999987789999999999998764322221 223444444442 45688888888
Q ss_pred CCC-----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC----CC-CCcccHHHHHHHCCCCcHH-----HHHH
Q 003743 654 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PL-ADDVDLEAIAHMTEGFSGA-----DLQA 718 (799)
Q Consensus 654 ~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~-~~~~~~~~la~~~~g~sg~-----di~~ 718 (799)
..+ ..|+++.| ||. .|.|+.|+.+++.+|++.....+ .+ -.+..+..++..+..|-+. -.-.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 643 37999999 996 68999999999999998765542 11 1333455666666554322 1122
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcC--C--CCCHHHHHHHHHHHHHhhcCC
Q 003743 719 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR--P--SVSEAEKLRLYSIYGQFLDSK 781 (799)
Q Consensus 719 ~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~--~--~~~~~~~~~~~~~~~~f~~~~ 781 (799)
++++|+... +. . ........|+.+|+..+++... | .++.++..++.++...+.+.-
T Consensus 397 lld~a~a~~--~~-~----~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v 456 (731)
T TIGR02639 397 VIDEAGASF--RL-R----PKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKI 456 (731)
T ss_pred HHHHhhhhh--hc-C----cccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcce
Confidence 344433211 11 0 0011235699999999988763 2 334566667766666555533
No 99
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=5.2e-16 Score=168.23 Aligned_cols=233 Identities=20% Similarity=0.265 Sum_probs=154.5
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcc
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGA 586 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~ 586 (799)
.|++++|++++++.|..++...... ...+.+++|+||||||||++|+++|+.++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5889999999999998877532111 123457999999999999999999999998877666543211
Q ss_pred cHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc----------------ccCcEEEEE
Q 003743 587 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFVFA 650 (799)
Q Consensus 587 se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~----------------~~~~vlvi~ 650 (799)
...+...+... ..+.||||||+|.+.+. ....|...|+... ...++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 12233333332 34579999999998542 2223333332111 123478889
Q ss_pred ecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 003743 651 ATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVH 729 (799)
Q Consensus 651 ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~ 729 (799)
+||++..+++++++ ||...+.|++|+.+++.+|++..+....+. ++..++.|+..+.|.. +.+..++..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHH
Confidence 99999999999998 998889999999999999999887765443 3334677888887654 5555566644333321
Q ss_pred HHhcccCCCCCCCCCcccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhhcC
Q 003743 730 EILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 730 ~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~---~~~~~~~~~~~~~~~~f~~~ 780 (799)
. ....|+.+++..++..... ..+..+...+..+...+..+
T Consensus 212 ~-----------~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~ 254 (305)
T TIGR00635 212 R-----------GQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG 254 (305)
T ss_pred c-----------CCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 1 1245899999999876532 22334333344455555433
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.72 E-value=2.1e-16 Score=163.75 Aligned_cols=208 Identities=24% Similarity=0.328 Sum_probs=144.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCe---EEEEeccchhhhhhcccHHHHHHHHHHhHh-----cCCeEEEEcccccccC
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAP 616 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~---~i~i~~~~l~~~~~g~se~~i~~~f~~a~~-----~~p~ILfiDEid~l~~ 616 (799)
+++|+||||||||++|+.++.-..-+ ||++++.. .....++++|+.+.. ....|||||||+++..
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 79999999999999999999877544 88888743 455789999999854 4457999999999854
Q ss_pred CCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc-cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC--
Q 003743 617 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL-LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-- 693 (799)
Q Consensus 617 ~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~-ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~-- 693 (799)
. +--..|..++.++-++|-+||.+|+. ++.+|+++| +++.+..........||......+
T Consensus 237 s--------------QQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 237 S--------------QQDTFLPHVENGDITLIGATTENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred h--------------hhhcccceeccCceEEEecccCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhcc
Confidence 3 22334566677777788888888887 999999954 455666777888888887643311
Q ss_pred ------CCCC---ccc---HHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCC
Q 003743 694 ------PLAD---DVD---LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPS 761 (799)
Q Consensus 694 ------~~~~---~~~---~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~ 761 (799)
++.. .++ ++.|+..++ +|.+..++...+. +........ ......++.+|++++++.-. .
T Consensus 300 ser~~~~l~n~s~~ve~siidyla~lsd----GDaR~aLN~Lems-~~m~~tr~g---~~~~~~lSidDvke~lq~s~-~ 370 (554)
T KOG2028|consen 300 SERPTDPLPNSSMFVEDSIIDYLAYLSD----GDARAALNALEMS-LSMFCTRSG---QSSRVLLSIDDVKEGLQRSH-I 370 (554)
T ss_pred ccccCCCCCCcchhhhHHHHHHHHHhcC----chHHHHHHHHHHH-HHHHHhhcC---CcccceecHHHHHHHHhhcc-c
Confidence 2221 133 455666666 4655555432222 112222111 12456899999999997644 4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchh
Q 003743 762 VSEAEKLRLYSIYGQFLDSKKSVA 785 (799)
Q Consensus 762 ~~~~~~~~~~~~~~~f~~~~~~~~ 785 (799)
..+..-+.+|+..+.|++|.|+.+
T Consensus 371 ~YDr~Ge~HYntISA~HKSmRG~D 394 (554)
T KOG2028|consen 371 LYDRAGEEHYNTISALHKSMRGSD 394 (554)
T ss_pred eecccchhHHHHHHHHHHhhcCCc
Confidence 566666778899999999988765
No 101
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=3.5e-16 Score=171.07 Aligned_cols=203 Identities=17% Similarity=0.256 Sum_probs=145.2
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+..|++++|.+..++.+...+...... -.+++++|||||||||||++|+++|+.++ ..+..++
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~ 83 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITS 83 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEe
Confidence 3668999999999888877666443321 13457899999999999999999999998 3344444
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----cc--
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KR-- 366 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~-----~~-- 366 (799)
...+.. .+ .+..++... ..++||||||||.+.. .....+...++.... ..
T Consensus 84 ~~~~~~--~~----~l~~~l~~l--~~~~vl~IDEi~~l~~---------------~~~e~l~~~~e~~~~~~~l~~~~~ 140 (328)
T PRK00080 84 GPALEK--PG----DLAAILTNL--EEGDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPA 140 (328)
T ss_pred cccccC--hH----HHHHHHHhc--ccCCEEEEecHhhcch---------------HHHHHHHHHHHhcceeeeeccCcc
Confidence 332221 11 233344433 4578999999999852 122234444544321 00
Q ss_pred --CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChh
Q 003743 367 --KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 444 (799)
Q Consensus 367 --~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~ 444 (799)
.......++.+|++||.+..++++|++ ||...+.|++|+.+++.+|++..+...++.++++.+..++..+.|. ++
T Consensus 141 ~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR 217 (328)
T PRK00080 141 ARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PR 217 (328)
T ss_pred ccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-ch
Confidence 001122357889999999999999999 9988899999999999999999999999999999999999999884 57
Q ss_pred hHHHHHHHHHHHHh
Q 003743 445 DLEILVDRTVHAAV 458 (799)
Q Consensus 445 dl~~lv~~A~~~a~ 458 (799)
.+..+++.+...+.
T Consensus 218 ~a~~~l~~~~~~a~ 231 (328)
T PRK00080 218 IANRLLRRVRDFAQ 231 (328)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776654443
No 102
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.6e-17 Score=181.46 Aligned_cols=268 Identities=18% Similarity=0.273 Sum_probs=178.7
Q ss_pred HHHHHHHHhhcccccc--------------cceeccccceEEEEEeeccccccCCCCCccCccchhhhhccccceeeEEE
Q 003743 89 LLAQLTAVASNIGSEF--------------NTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCV 154 (799)
Q Consensus 89 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 154 (799)
+-.||++|---.|.|- .++.+|...+= |+.+|..|+- ....+.++..+-..||
T Consensus 318 L~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~k---v~~eEl~kL~----------~le~~~sEfnvtrNYL 384 (906)
T KOG2004|consen 318 LREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLK---VIDEELTKLK----------LLEPSSSEFNVTRNYL 384 (906)
T ss_pred HHHHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHH---HHHHHHHHHh----------ccCccccchhHHHHHH
Confidence 4467999998888652 23333433332 2233333333 1123334444445555
Q ss_pred EecccccccCCCCCceeeeeeccccCCCCHHHHHHHHhcCCCCCceEEEEeeecCccCCCCCccccccCchhHHHHHHHH
Q 003743 155 LTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINR 234 (799)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~i~~~ 234 (799)
.-| ..|.|......+-++..+++.+..-+| |++++|++|+++
T Consensus 385 dwl------------t~LPWgk~S~En~dl~~Ak~iLdeDHY--------------------------gm~dVKeRILEf 426 (906)
T KOG2004|consen 385 DWL------------TSLPWGKSSTENLDLARAKEILDEDHY--------------------------GMEDVKERILEF 426 (906)
T ss_pred HHH------------HhCCCCCCChhhhhHHHHHHhhccccc--------------------------chHHHHHHHHHH
Confidence 555 677899987767777778887776665 489999999998
Q ss_pred HHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec------ccccc---cchhhH
Q 003743 235 IKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC------SRLSL---EKGPII 305 (799)
Q Consensus 235 l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~------s~l~~---~~~~~~ 305 (799)
|.+--- .|--.+.-++|+||||+|||++++.||+.|+ ..|..++. +++.+ .+.|..
T Consensus 427 iAV~kL---------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn------RkFfRfSvGG~tDvAeIkGHRRTYVGAM 491 (906)
T KOG2004|consen 427 IAVGKL---------RGSVQGKILCFVGPPGVGKTSIAKSIARALN------RKFFRFSVGGMTDVAEIKGHRRTYVGAM 491 (906)
T ss_pred HHHHhh---------cccCCCcEEEEeCCCCCCcccHHHHHHHHhC------CceEEEeccccccHHhhcccceeeeccC
Confidence 854322 1234567799999999999999999999999 55666654 33333 344666
Q ss_pred HHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc------CCccCCCCEEEEE
Q 003743 306 RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR------KSSCGIGPIAFVA 379 (799)
Q Consensus 306 ~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~------~~~~~~~~v~vI~ 379 (799)
.+++-+.+......+| +++|||||.+.+ .-.|+. .+.|++++|--++.. ........|+|||
T Consensus 492 PGkiIq~LK~v~t~NP-liLiDEvDKlG~---g~qGDP--------asALLElLDPEQNanFlDHYLdVp~DLSkVLFic 559 (906)
T KOG2004|consen 492 PGKIIQCLKKVKTENP-LILIDEVDKLGS---GHQGDP--------ASALLELLDPEQNANFLDHYLDVPVDLSKVLFIC 559 (906)
T ss_pred ChHHHHHHHhhCCCCc-eEEeehhhhhCC---CCCCCh--------HHHHHHhcChhhccchhhhccccccchhheEEEE
Confidence 6666667777665666 899999999972 122221 223444444222111 1133456799999
Q ss_pred ecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----------cccCCCHHHHHHHHhh
Q 003743 380 SAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDVASK 437 (799)
Q Consensus 380 ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----------~~~~~~~~~l~~la~~ 437 (799)
|+|..+.|+++|+. |+. .|+++-|..+|...|.++|+-. ..+.++++++..+.+.
T Consensus 560 TAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~ 624 (906)
T KOG2004|consen 560 TANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER 624 (906)
T ss_pred eccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH
Confidence 99999999999999 987 8999999999999999988743 3456777776665544
No 103
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=4.9e-16 Score=168.44 Aligned_cols=199 Identities=18% Similarity=0.272 Sum_probs=140.7
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
+|++++|.+..++.+...+....... ..+.+++||||||||||++|+++|+.++ ..+..+++..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~----------~~~~~~ll~Gp~G~GKT~la~~ia~~~~------~~~~~~~~~~ 65 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ----------EALDHLLLYGPPGLGKTTLAHIIANEMG------VNLKITSGPA 65 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeccch
Confidence 57889999999988877765443311 2356799999999999999999999987 3333333322
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc---------cC
Q 003743 297 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---------RK 367 (799)
Q Consensus 297 l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~---------~~ 367 (799)
... .+. +...+... ..+.+|||||+|.+.+ .....|.+.++..... ..
T Consensus 66 ~~~--~~~----l~~~l~~~--~~~~vl~iDEi~~l~~---------------~~~e~l~~~~~~~~~~~v~~~~~~~~~ 122 (305)
T TIGR00635 66 LEK--PGD----LAAILTNL--EEGDVLFIDEIHRLSP---------------AVEELLYPAMEDFRLDIVIGKGPSARS 122 (305)
T ss_pred hcC--chh----HHHHHHhc--ccCCEEEEehHhhhCH---------------HHHHHhhHHHhhhheeeeeccCccccc
Confidence 111 111 22233332 4567999999999862 1223344444433210 00
Q ss_pred CccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHH
Q 003743 368 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 447 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~ 447 (799)
......++.+|++||.+..+++++++ ||...+.+++|+.+++.++++..+...++.+++++++.+++.+.|. ++.+.
T Consensus 123 ~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~ 199 (305)
T TIGR00635 123 VRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIAN 199 (305)
T ss_pred eeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHH
Confidence 01122357899999999999999999 9988899999999999999999998888999999999999998884 56667
Q ss_pred HHHHHHHHHH
Q 003743 448 ILVDRTVHAA 457 (799)
Q Consensus 448 ~lv~~A~~~a 457 (799)
.++..+...+
T Consensus 200 ~ll~~~~~~a 209 (305)
T TIGR00635 200 RLLRRVRDFA 209 (305)
T ss_pred HHHHHHHHHH
Confidence 7777655433
No 104
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=4.6e-16 Score=187.73 Aligned_cols=214 Identities=21% Similarity=0.294 Sum_probs=144.3
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
.++.|++.+++.|.+.+...... +-..+.++||+||||||||++|+++|+.++ .+++.++++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~---------~~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~ 384 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR---------GKMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVR 384 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh---------cCCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCcc
Confidence 34778888888888876443211 112344799999999999999999999998 566666654321
Q ss_pred c---------cchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc---
Q 003743 299 L---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR--- 366 (799)
Q Consensus 299 ~---------~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~--- 366 (799)
. .+.+...+.+...+..+....| ||||||||.+.+.. .++ ..+.|++.+|......
T Consensus 385 ~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~---~~~--------~~~aLl~~ld~~~~~~f~d 452 (775)
T TIGR00763 385 DEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF---RGD--------PASALLEVLDPEQNNAFSD 452 (775)
T ss_pred cHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc---CCC--------HHHHHHHhcCHHhcCcccc
Confidence 1 1222233345556666544444 89999999997421 111 1334555555311110
Q ss_pred ---CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhh-----hc-----ccCCCHHHHHH
Q 003743 367 ---KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR-----SLECSDEILLD 433 (799)
Q Consensus 367 ---~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~-----~~-----~~~~~~~~l~~ 433 (799)
.......++++|+|||.++.++++|++ ||. .|.|+.|+.+++.+|++.++. .. .+.++++++..
T Consensus 453 ~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~ 529 (775)
T TIGR00763 453 HYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLL 529 (775)
T ss_pred ccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHH
Confidence 011123468999999999999999999 996 789999999999999988762 22 35688889998
Q ss_pred HHhh-cCCCChhhHHHHHHHHHHHHhcccc
Q 003743 434 VASK-CDGYDAYDLEILVDRTVHAAVGRYL 462 (799)
Q Consensus 434 la~~-~~g~s~~dl~~lv~~A~~~a~~r~~ 462 (799)
+++. +..+..++|+..+...+..+..+..
T Consensus 530 i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 530 LIKYYTREAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred HHHhcChhcCChHHHHHHHHHHHHHHHHHH
Confidence 8774 3445678888888777766655543
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.67 E-value=6.8e-16 Score=157.89 Aligned_cols=190 Identities=21% Similarity=0.256 Sum_probs=145.3
Q ss_pred eecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce
Q 003743 206 KERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL 285 (799)
Q Consensus 206 ~~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~ 285 (799)
...|.....+.+++++.|.+.++.-+.+.+..- ...++|||||||||||+.|+++|+++......
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~---------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~ 87 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRR---------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLF 87 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhc---------------CCceEEeeCCCCCcHhHHHHHHHHHhcCcccc
Confidence 445777778999999999998887777765431 12369999999999999999999999854433
Q ss_pred eeEEEEEecccccccchhhHHHHHHHHHHHHHh------c----CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 003743 286 VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD------H----APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 355 (799)
Q Consensus 286 ~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~------~----~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~L 355 (799)
...++..|.++..|... ....+.. |..... + ..-|++|||+|.+.. .....|
T Consensus 88 ~~rvl~lnaSderGisv--vr~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aL 149 (346)
T KOG0989|consen 88 PCRVLELNASDERGISV--VREKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAAL 149 (346)
T ss_pred ccchhhhcccccccccc--hhhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHH
Confidence 44556667777665442 2222221 222111 1 124999999999972 456777
Q ss_pred HHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHH
Q 003743 356 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 435 (799)
Q Consensus 356 l~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la 435 (799)
.+.|+.+.. .+.+|..||+++.|+..+.+ |.. ++.|++...+.....++..+.++++.++++++..++
T Consensus 150 rr~mE~~s~---------~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~ 217 (346)
T KOG0989|consen 150 RRTMEDFSR---------TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA 217 (346)
T ss_pred HHHHhcccc---------ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 788887543 37889999999999999999 887 899999999999999999999999999999999999
Q ss_pred hhcCC
Q 003743 436 SKCDG 440 (799)
Q Consensus 436 ~~~~g 440 (799)
+.++|
T Consensus 218 ~~S~G 222 (346)
T KOG0989|consen 218 KISDG 222 (346)
T ss_pred HHcCC
Confidence 98887
No 106
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.67 E-value=1.2e-15 Score=171.84 Aligned_cols=225 Identities=24% Similarity=0.332 Sum_probs=149.9
Q ss_pred CCCCCCCCCChHHHHHH---HHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 504 GRSGWDDVGGLTDIQNA---IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.+..+++++|++++... +...+... ...+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 45678899999988655 66665421 12379999999999999999999999999999998642
Q ss_pred hhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe-cCCC
Q 003743 581 NKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA-TSRP 655 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t-tn~~ 655 (799)
....++.+++.+. .+...||||||+|.+. ....+.|+..++. ..+++|++ |..+
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~att~n~ 131 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGATTENP 131 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeCCCCh
Confidence 2345566666653 2356799999999984 3345566766642 33555544 4444
Q ss_pred -CccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC--CC-C-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Q 003743 656 -DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL--PL-A-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHE 730 (799)
Q Consensus 656 -~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~--~~-~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~ 730 (799)
..+++++++ |+ .++.|++++.++...+++..+... ++ . .+..++.|+..+ ++|++.+++.....+..
T Consensus 132 ~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s----~Gd~R~aln~Le~~~~~- 203 (413)
T PRK13342 132 SFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLA----NGDARRALNLLELAALG- 203 (413)
T ss_pred hhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC----CCCHHHHHHHHHHHHHc-
Confidence 469999999 77 678999999999999998876542 11 1 122244555555 45655544422221110
Q ss_pred HhcccCCCCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCch
Q 003743 731 ILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSV 784 (799)
Q Consensus 731 ~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 784 (799)
...|+.+++..++..... ..++....++++.+.|.++.++.
T Consensus 204 ------------~~~It~~~v~~~~~~~~~-~~d~~~~~~~~~isa~~ks~rgs 244 (413)
T PRK13342 204 ------------VDSITLELLEEALQKRAA-RYDKDGDEHYDLISALHKSIRGS 244 (413)
T ss_pred ------------cCCCCHHHHHHHHhhhhh-ccCCCccHHHHHHHHHHHHHhcC
Confidence 135899999998876432 22223344777888888876554
No 107
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.7e-15 Score=166.92 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=129.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++++|++.+.+.|...+... +.+..+||+||||||||++|+++|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 345678999999999999988877632 122358999999999999999999988652
Q ss_pred -------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 571 -------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 571 -------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
++.+++..- ..-..++++.+.+. .+.+.|+||||+|.| ....++.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHHHHH
Confidence 334443211 11234555555443 345679999999998 34578899
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCC
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 710 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 710 (799)
|+.|+ +....+++|.+|+.++.+.+++++ |+ ..++|.+++.++..+.++.++...++. ++..+..|+..++|
T Consensus 142 LKtLE--EPp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 142 LKTLE--EPPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHhh--cCCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99987 455678888888889999999999 66 467899999999999999888766553 34446777777764
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.65 E-value=2e-15 Score=178.86 Aligned_cols=244 Identities=21% Similarity=0.258 Sum_probs=162.9
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..++.+.|-++..+.+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3466788877777777665543 123478999999999999999999764 55677777
Q ss_pred ccchh--hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecC
Q 003743 576 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 576 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
...+. .+|.|+.+..++.+|..+....++||||||+|.+++.+...... ..+.+.|...+ ..+.+.+|++|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~~nlLkp~L----~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLL----SSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHHHHHHHHHH----hCCCeEEEecCC
Confidence 76666 46889999999999999988888999999999998765322211 12222232222 356788999999
Q ss_pred CCC-----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCccc--HHHH---HHHC-----CCCcHHHHHH
Q 003743 654 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVD--LEAI---AHMT-----EGFSGADLQA 718 (799)
Q Consensus 654 ~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~--~~~l---a~~~-----~g~sg~di~~ 718 (799)
.++ ..|++|.| ||. .|.++.|+.+++..||+.+...+....++. .+.+ +..+ +.+-+...-.
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 875 37999999 996 799999999999999998776654443332 2222 2222 2333556666
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHhh
Q 003743 719 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP----SVSEAEKLRLYSIYGQFL 778 (799)
Q Consensus 719 ~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~----~~~~~~~~~~~~~~~~f~ 778 (799)
++.+|+... +... . ......|+.+|+.+.+....- .+..++.+.+.++...+.
T Consensus 401 lldea~a~~--~~~~-~----~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~ 457 (758)
T PRK11034 401 VIDEAGARA--RLMP-V----SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_pred HHHHHHHhh--ccCc-c----cccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhc
Confidence 777776432 1111 0 012235888888888765432 223344445555544443
No 109
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=6.1e-15 Score=169.47 Aligned_cols=186 Identities=19% Similarity=0.243 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||+|||||++++++|+.+++
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456688999999999999998887631 12235799999999999999999998754
Q ss_pred ------------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 570 ------------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 570 ------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
.+++++..+ ...-..++++++.+.. +...|+||||+|.| .....|.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHHHH
Confidence 244444332 1123456677766532 34579999999998 34578899
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
|+.|+ +....+.||.+||.++.|.+.+++ |+ ..+.|..++.++..++|+.++...++. ++..+..|++.++| +
T Consensus 140 LKtLE--EPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLE--EPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHH--hcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99887 445678888889999999999999 66 678999999999999999988766553 34446777788775 3
Q ss_pred HHHHHHHHHH
Q 003743 713 GADLQALLSD 722 (799)
Q Consensus 713 g~di~~~~~~ 722 (799)
.++..+++..
T Consensus 214 mRdALsLLdQ 223 (830)
T PRK07003 214 MRDALSLTDQ 223 (830)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 110
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.6e-15 Score=165.05 Aligned_cols=196 Identities=16% Similarity=0.239 Sum_probs=140.7
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce-----
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----- 285 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~----- 285 (799)
....+..|++++|.+.++..+...+.. . ..+..+||+||||||||++|+.+|+.++.....
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~----~----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS----G----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 334577899999999888776665431 1 123459999999999999999999998743110
Q ss_pred -------------eeEEEEEecccccccchhhHHHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCCchhH
Q 003743 286 -------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSV 348 (799)
Q Consensus 286 -------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~ 348 (799)
...++.++.+.-. ... .++.+...+ ......|+||||+|.+..
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas~~--gVd----~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------- 135 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAASNR--GIE----NIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------- 135 (484)
T ss_pred CCCcHHHHHHccCCccceeechhhcc--cHH----HHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------------
Confidence 0123334332211 112 233333332 223456999999999962
Q ss_pred HHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCH
Q 003743 349 IALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428 (799)
Q Consensus 349 ~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~ 428 (799)
..++.|+..++.... .+++|++|+.+..+++++++ |+. ++.|..++.++..+.++..+...++.+++
T Consensus 136 -~A~NALLKtLEEPp~---------~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~ 202 (484)
T PRK14956 136 -QSFNALLKTLEEPPA---------HIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQ 202 (484)
T ss_pred -HHHHHHHHHhhcCCC---------ceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 345666766665332 48888899999999999999 875 78999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+++..+++.++| +.++.-+++++++
T Consensus 203 eAL~~Ia~~S~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 203 EGLFWIAKKGDG-SVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 999999999887 5777777776655
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-14 Score=164.76 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=141.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|++.+++.|...+... +.+.++||+||||||||++|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 45678999999999999888766532 12346899999999999999999998754
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
.++.++++.- ..-..++++.+.+.. +.+.||||||+|.+. ...++.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHH
Confidence 3556655321 112345665555432 335699999999983 34567788
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
..|+. ....+++|++|+.|..+++++.+ |+ ..+.|.+|+.++...+++..+...++. .+..++.|+..+.
T Consensus 139 k~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~---- 209 (472)
T PRK14962 139 KTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS---- 209 (472)
T ss_pred HHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----
Confidence 88863 33456666677778899999999 76 478999999999999999888765442 2333566666554
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 714 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 714 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
+|++.+++.... ..... . ..||.+++..++...
T Consensus 210 GdlR~aln~Le~-----l~~~~-----~--~~It~e~V~~~l~~~ 242 (472)
T PRK14962 210 GGLRDALTMLEQ-----VWKFS-----E--GKITLETVHEALGLI 242 (472)
T ss_pred CCHHHHHHHHHH-----HHHhc-----C--CCCCHHHHHHHHcCC
Confidence 455554442221 11100 0 138899988887543
No 112
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.6e-15 Score=170.54 Aligned_cols=186 Identities=20% Similarity=0.263 Sum_probs=137.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+.+|+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 345678999999999999999887642 12235799999999999999999998865
Q ss_pred -----------------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhH
Q 003743 570 -----------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDR 628 (799)
Q Consensus 570 -----------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r 628 (799)
.+++++... ...-..++++.+.+. .+...|+||||+|.|. ..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NH 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HH
Confidence 233333321 112345666666543 3456799999999993 45
Q ss_pred HHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHH
Q 003743 629 VVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD-DVDLEAIAHM 707 (799)
Q Consensus 629 ~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~ 707 (799)
..|.||+.|+ +...++++|.+||.++.|.+.+++ |+ ..+.|+.++.++..+.++.++...++.- +..++.|++.
T Consensus 140 AaNALLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7889999997 455677888889999999999999 65 6789999999999999988877655542 2336777888
Q ss_pred CCCCcHHHHHHHHHH
Q 003743 708 TEGFSGADLQALLSD 722 (799)
Q Consensus 708 ~~g~sg~di~~~~~~ 722 (799)
++| +.++..+++..
T Consensus 215 A~G-s~RdALsLLdQ 228 (700)
T PRK12323 215 AQG-SMRDALSLTDQ 228 (700)
T ss_pred cCC-CHHHHHHHHHH
Confidence 774 55665555544
No 113
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.5e-15 Score=164.87 Aligned_cols=223 Identities=23% Similarity=0.278 Sum_probs=156.4
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh---------
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL--------- 580 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~--------- 580 (799)
+=.|++++|+.+.+++.-..... -....-++|+||||+|||++++.+|+.++..|+.++..-+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 44799999999999887422111 11223578999999999999999999999999999875443
Q ss_pred hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC-------------ccccCcEE
Q 003743 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-------------VEVLTGVF 647 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~-------------~~~~~~vl 647 (799)
..|+|.....+-+-+++|....| |++|||||++...-.++..+ .||..||- -...+.|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaS-------ALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPAS-------ALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHH-------HHHhhcCHhhcCchhhccccCccchhheE
Confidence 35999999999999999998888 88899999997654433332 34433331 12345799
Q ss_pred EEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHH-----ccCCCCC---cccHHHHHHHCCCCcH------
Q 003743 648 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-----RKLPLAD---DVDLEAIAHMTEGFSG------ 713 (799)
Q Consensus 648 vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~~---~~~~~~la~~~~g~sg------ 713 (799)
+|+|+|..+.++.+|+. |+ .+|.++-|+++|..+|.+.++ +..++.. .+..++|-.+-..||.
T Consensus 469 FiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999999 88 578999999999999998764 3334432 2334455444444442
Q ss_pred --HHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CcccHHHHHHHHhhcC
Q 003743 714 --ADLQALLSDAQLSAVHEILNNIDSNEPGKM-PVITDALLKSIASKAR 759 (799)
Q Consensus 714 --~di~~~~~~a~~~a~~~~~~~~~~~~~~~~-~~it~e~l~~a~~~~~ 759 (799)
+.|.++|+.++..-+.. . ... ..|+..++.+.+...+
T Consensus 546 LeR~i~ki~RK~~~~i~~~----~-----~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 546 LEREIAKICRKAAKKILLK----K-----EKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HHHHHHHHHHHHHHHHHhc----C-----cccceeeCHHHHHHHhCCcc
Confidence 44455555444333221 1 112 2577778887776544
No 114
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.62 E-value=5.7e-15 Score=170.42 Aligned_cols=232 Identities=15% Similarity=0.194 Sum_probs=154.6
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----c
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----D 284 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~ 284 (799)
|.....+..|++++|.+..++.++..+ . -+.+.++||+||||||||++|+++++.+.... .
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al---~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~ 119 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAAL---C------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK 119 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHH---h------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC
Confidence 334455678999999998877776432 1 12456899999999999999999998764321 1
Q ss_pred eeeEEEEEecccccccchhhHHHHHH----------HHH----------HHHHhcCCcEEEEccccccccCCCCCCCCCC
Q 003743 285 LVAHIVFVCCSRLSLEKGPIIRQALS----------NFI----------SEALDHAPSIVIFDNLDSIISSSSDPEGSQP 344 (799)
Q Consensus 285 ~~~~~~~v~~s~l~~~~~~~~~~~l~----------~~~----------~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~ 344 (799)
...+++.++|........+.....+. ..+ ........++|||||+|.+.+
T Consensus 120 ~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~---------- 189 (531)
T TIGR02902 120 EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP---------- 189 (531)
T ss_pred CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------
Confidence 12578888886421111000000000 000 011123457999999999963
Q ss_pred chhHHHHHHHHHHHHHHhc---------cccC-----------CccCCCCEEEEEecCCCCccchhhhccCceeEEEecc
Q 003743 345 STSVIALTKFLVDIMDEYG---------EKRK-----------SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 404 (799)
Q Consensus 345 ~~~~~~l~~~Ll~~ld~~~---------~~~~-----------~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~ 404 (799)
...+.|+..++... .... .......+++++||+.++.+++++++ |+. .+.|+
T Consensus 190 -----~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~ 261 (531)
T TIGR02902 190 -----VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFR 261 (531)
T ss_pred -----HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCC
Confidence 34555555554321 0000 00111225566677789999999999 875 78999
Q ss_pred CCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchh
Q 003743 405 APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQA 484 (799)
Q Consensus 405 ~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~a 484 (799)
+++.+++.+|++..+++.++.+++++++.++.++. +++++.++++.|+..|..+ ....++.+|+..+
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~v 328 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWV 328 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHH
Confidence 99999999999999999999999999998887664 7899999999988766433 1245777887776
Q ss_pred cc
Q 003743 485 MH 486 (799)
Q Consensus 485 l~ 486 (799)
+.
T Consensus 329 l~ 330 (531)
T TIGR02902 329 AE 330 (531)
T ss_pred hC
Confidence 64
No 115
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1e-14 Score=167.65 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=142.0
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc--------
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------- 284 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~-------- 284 (799)
..+.+|++|+|.+.+++.+.+.+. .. ..+..+||+||+|||||++++.+|+.++....
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~----~g----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD----GG----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh----cC----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 356789999999988877766542 11 22445899999999999999999999873210
Q ss_pred ----------eeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 003743 285 ----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 354 (799)
Q Consensus 285 ----------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~ 354 (799)
....+++++.+.- .....+...+..+..........|+||||+|.|.. ..++.
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~--rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NA 138 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASN--RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNA 138 (830)
T ss_pred cHHHHHHhcCCCceEEEeccccc--ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHH
Confidence 0113444444321 11222333332222111223456999999999962 34566
Q ss_pred HHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 003743 355 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 434 (799)
Q Consensus 355 Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~l 434 (799)
|+..+++... .+.||++||.+..|.+.+++ |+. +|.|..++.++..++|+..+..+++.++++.+..|
T Consensus 139 LLKtLEEPP~---------~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lI 206 (830)
T PRK07003 139 MLKTLEEPPP---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLL 206 (830)
T ss_pred HHHHHHhcCC---------CeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7777776443 38889999999999999999 875 89999999999999999999999999999999999
Q ss_pred HhhcCCCChhhHHHHHHHHHH
Q 003743 435 ASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 435 a~~~~g~s~~dl~~lv~~A~~ 455 (799)
++.+.| +.++..+++.+++.
T Consensus 207 A~~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 207 ARAAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 999988 56666677666553
No 116
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=7.4e-15 Score=155.77 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=108.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEcccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLD 330 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD 330 (799)
-.+++|||||||||||+|+.||+..+ ..|..++.-.-. .+.++.+++.++. ....||||||||
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~------~~f~~~sAv~~g-------vkdlr~i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTN------AAFEALSAVTSG-------VKDLREIIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhC------CceEEecccccc-------HHHHHHHHHHHHHHHhcCCceEEEEehhh
Confidence 34699999999999999999999998 777777664422 1235666666633 346799999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecC--CCCccchhhhccCceeEEEeccCCCH
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAA 408 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn--~~~~ld~aL~r~gRf~~~i~~~~p~~ 408 (799)
++-. .-...|+..++.. .+++|++|+ +.-.+.+||++ |.. ++.+.+.+.
T Consensus 115 RfnK---------------~QQD~lLp~vE~G-----------~iilIGATTENPsF~ln~ALlS--R~~-vf~lk~L~~ 165 (436)
T COG2256 115 RFNK---------------AQQDALLPHVENG-----------TIILIGATTENPSFELNPALLS--RAR-VFELKPLSS 165 (436)
T ss_pred hcCh---------------hhhhhhhhhhcCC-----------eEEEEeccCCCCCeeecHHHhh--hhh-eeeeecCCH
Confidence 9952 2244566665542 377887763 34678999999 654 789999999
Q ss_pred HHHHHHHHHHhh--hcccC-----CCHHHHHHHHhhcCCC
Q 003743 409 SERKAILEHEIQ--RRSLE-----CSDEILLDVASKCDGY 441 (799)
Q Consensus 409 ~er~~Il~~~l~--~~~~~-----~~~~~l~~la~~~~g~ 441 (799)
++..+++.+.+. .+++. +++++++.++..++|-
T Consensus 166 ~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 166 EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred HHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 999999998443 34444 7899999999998884
No 117
>PRK04195 replication factor C large subunit; Provisional
Probab=99.62 E-value=1.7e-14 Score=165.65 Aligned_cols=194 Identities=18% Similarity=0.279 Sum_probs=141.9
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....+..+++++|.+.+++.+.+++..+.. |. +++++|||||||||||++|+++|+.++ .
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~----------g~-~~~~lLL~GppG~GKTtla~ala~el~------~ 65 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK----------GK-PKKALLLYGPPGVGKTSLAHALANDYG------W 65 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc----------CC-CCCeEEEECCCCCCHHHHHHHHHHHcC------C
Confidence 577777889999999999999999988876652 12 267899999999999999999999998 7
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHHHHh------cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISEALD------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 361 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~------~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~ 361 (799)
.++.+++++.... . .+..+...+.. ..+.||+|||+|.+.... + . .....|...++.
T Consensus 66 ~~ielnasd~r~~--~----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-d------~----~~~~aL~~~l~~ 128 (482)
T PRK04195 66 EVIELNASDQRTA--D----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-D------R----GGARAILELIKK 128 (482)
T ss_pred CEEEEcccccccH--H----HHHHHHHHhhccCcccCCCCeEEEEecCccccccc-c------h----hHHHHHHHHHHc
Confidence 7888888764321 1 22333322221 246799999999986311 1 0 123344444442
Q ss_pred hccccCCccCCCCEEEEEecCCCCccch-hhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCC
Q 003743 362 YGEKRKSSCGIGPIAFVASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 440 (799)
Q Consensus 362 ~~~~~~~~~~~~~v~vI~ttn~~~~ld~-aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g 440 (799)
. ...+|+++|.+..+++ .+++ |+ ..|.|++|+..++..+++..+...++.+++++++.|+..+.|
T Consensus 129 ~-----------~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 129 A-----------KQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred C-----------CCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 1 1346667888887776 5665 54 489999999999999999999999999999999999998765
Q ss_pred CChhhHHHHHHHH
Q 003743 441 YDAYDLEILVDRT 453 (799)
Q Consensus 441 ~s~~dl~~lv~~A 453 (799)
|++.++...
T Consensus 195 ----DlR~ain~L 203 (482)
T PRK04195 195 ----DLRSAINDL 203 (482)
T ss_pred ----CHHHHHHHH
Confidence 666655543
No 118
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=4e-15 Score=177.76 Aligned_cols=252 Identities=16% Similarity=0.228 Sum_probs=168.4
Q ss_pred hhccccceeeEEEEecccccccCCCCCceeeeeeccccCCCCHHHHHHHHhcCCCCCceEEEEeeecCccCCCCCccccc
Q 003743 142 TKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSL 221 (799)
Q Consensus 142 ~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l 221 (799)
....+..+-.-||.++ ..|.|......+.+...+++.+.+.+
T Consensus 283 ~~~~e~~~~~~yl~~~------------~~~pw~~~~~~~~~~~~~~~~l~~~~-------------------------- 324 (784)
T PRK10787 283 PMSAEATVVRGYIDWM------------VQVPWNARSKVKKDLRQAQEILDTDH-------------------------- 324 (784)
T ss_pred CCCchHHHHHHHHHHH------------HhCCCCCCCcccccHHHHHHHhhhhc--------------------------
Confidence 3344555555677766 67889888766677777877766444
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc--
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-- 299 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~-- 299 (799)
.|++.+|+.|++++....... -..+..++|+||||+|||++++.+|+.++ .+++.++++....
T Consensus 325 ~g~~~vK~~i~~~l~~~~~~~---------~~~g~~i~l~GppG~GKTtl~~~ia~~l~------~~~~~i~~~~~~d~~ 389 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRVN---------KIKGPILCLVGPPGVGKTSLGQSIAKATG------RKYVRMALGGVRDEA 389 (784)
T ss_pred cCHHHHHHHHHHHHHHHHhcc---------cCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEcCCCCCHH
Confidence 458999999998886443211 12345699999999999999999999998 5566665544221
Q ss_pred -------cchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc------c
Q 003743 300 -------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK------R 366 (799)
Q Consensus 300 -------~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~------~ 366 (799)
.+.+...+.+...+..+.... .||||||+|.+.+.. .+ ...+.|++.+|.-... -
T Consensus 390 ~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~---~g--------~~~~aLlevld~~~~~~~~d~~~ 457 (784)
T PRK10787 390 EIRGHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDM---RG--------DPASALLEVLDPEQNVAFSDHYL 457 (784)
T ss_pred HhccchhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhccccc---CC--------CHHHHHHHHhccccEEEEecccc
Confidence 111222233333444443233 489999999997421 11 1245666666632110 0
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----------cccCCCHHHHHHHHh
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDVAS 436 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----------~~~~~~~~~l~~la~ 436 (799)
......+.+++|+|+|.. .++++|++ |+. .|.+..++.++..+|++.++.. ..+.++++++..+++
T Consensus 458 ~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 458 EVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred cccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 112234579999999987 59999999 996 7999999999999999988742 235688999999886
Q ss_pred hc-CCCChhhHHHHHHHHHHHHhcccc
Q 003743 437 KC-DGYDAYDLEILVDRTVHAAVGRYL 462 (799)
Q Consensus 437 ~~-~g~s~~dl~~lv~~A~~~a~~r~~ 462 (799)
.+ ..+-.+.|+..+++.+...+.+.+
T Consensus 534 ~yt~e~GaR~LeR~I~~i~r~~l~~~~ 560 (784)
T PRK10787 534 YYTREAGVRSLEREISKLCRKAVKQLL 560 (784)
T ss_pred hCCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 43 334467788888877776665543
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=3.1e-14 Score=161.59 Aligned_cols=208 Identities=22% Similarity=0.257 Sum_probs=147.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++++|++.+.+.|...+... +.+.++||+||||||||++|+++|+.++..
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456688999999999999998766531 223579999999999999999999988542
Q ss_pred -----------------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHH
Q 003743 571 -----------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRV 629 (799)
Q Consensus 571 -----------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~ 629 (799)
++++++.. ..+...++++++.+.. +...|++|||+|.+. ...
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a 144 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGA 144 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHH
Confidence 22222211 1234567888877743 335699999999983 356
Q ss_pred HHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHC
Q 003743 630 VNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT 708 (799)
Q Consensus 630 ~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~ 708 (799)
++.|++.|+ +....+++|.+|+.++.+.+++++ |+ ..+.|++++.++...+++.+++..++. ++..++.|+..+
T Consensus 145 ~naLLk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 145 FNALLKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHHHHHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 788888887 344566777777888889999998 66 578899999999999999998876654 334467788887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 709 EGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 709 ~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
+| +.+++.+.+..+...+- .....||.+++.+.+.
T Consensus 220 ~G-slR~al~~Ldkai~~~~------------~~~~~It~~~V~~llg 254 (507)
T PRK06645 220 EG-SARDAVSILDQAASMSA------------KSDNIISPQVINQMLG 254 (507)
T ss_pred CC-CHHHHHHHHHHHHHhhc------------cCCCCcCHHHHHHHHC
Confidence 74 66666665554432210 0112477777776654
No 120
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-13 Score=162.24 Aligned_cols=168 Identities=18% Similarity=0.280 Sum_probs=109.2
Q ss_pred cccccCc-hhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEEEE
Q 003743 218 VSSLSWM-GTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 292 (799)
Q Consensus 218 ~~~l~g~-~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~~v 292 (799)
++.++|. ++...++++ .|... -+++-+|+|.||+|||.++.-+|+....+. .....++.+
T Consensus 185 ldPvigr~deeirRvi~----iL~Rr-----------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l 249 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIE----ILSRK-----------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIAL 249 (898)
T ss_pred CCCccCCchHHHHHHHH----HHhcc-----------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEE
Confidence 5666676 555555554 23321 235678999999999999999998876432 233455666
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 003743 293 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 369 (799)
Q Consensus 293 ~~s~l~--~~~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~ 369 (799)
+...+. ....++++.+++.+...+.. ....||||||+|.+.+.... .+ .....+.|...+..
T Consensus 250 ~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-~~------~~d~~nlLkp~L~r-------- 314 (898)
T KOG1051|consen 250 DFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-YG------AIDAANLLKPLLAR-------- 314 (898)
T ss_pred EhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-ch------HHHHHHhhHHHHhc--------
Confidence 655433 33458889999999998874 45568999999999854333 11 11223333322211
Q ss_pred cCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh
Q 003743 370 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 421 (799)
Q Consensus 370 ~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~ 421 (799)
+.+.+|+||..-. .-+|+|-+ ||+ .+.++.|+.++...|++..-..
T Consensus 315 ---g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 315 ---GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ---CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 1378888876422 23799999 998 6789999988877777754443
No 121
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.2e-14 Score=162.21 Aligned_cols=183 Identities=21% Similarity=0.246 Sum_probs=132.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|++.+++.|...+... +.+..+||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 45678999999999999998887631 22346899999999999999999998764
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
.++.+++++- ..-..++++...+. .+++.|+||||+|.|. ....+.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHH
Confidence 3455554321 12345677666553 2456799999999983 45678899
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+. ....+.+|.+|+.+..+.+.+++ |+ ..+.|.+++.++..+.++.++.+.++. .+..+..|+..+.| +.
T Consensus 140 KtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88873 34556666677888888888887 66 578999999999999999988876654 33446677777663 44
Q ss_pred HHHHHHH
Q 003743 714 ADLQALL 720 (799)
Q Consensus 714 ~di~~~~ 720 (799)
+++.+++
T Consensus 214 RdALnLL 220 (702)
T PRK14960 214 RDALSLT 220 (702)
T ss_pred HHHHHHH
Confidence 4444443
No 122
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.60 E-value=1e-14 Score=168.25 Aligned_cols=211 Identities=21% Similarity=0.261 Sum_probs=145.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEE
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFIS 573 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~ 573 (799)
.+..|+++.|.+...+.+...+.. ..+.++||+||||||||++|+++.+.+ +.+|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 456789999999988888754321 123589999999999999999998642 368999
Q ss_pred Eeccch-------hhhhhcccHH----------------HHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHH
Q 003743 574 VKGPEL-------LNKYIGASEQ----------------AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVV 630 (799)
Q Consensus 574 i~~~~l-------~~~~~g~se~----------------~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~ 630 (799)
++|... ....+|.... .-...+..|. ..+||||||+.|. ...+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~---gG~L~IdEI~~L~-----------~~~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAH---GGVLFIDEIGELH-----------PVQM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccC---CcEEEEechhhCC-----------HHHH
Confidence 998642 1111111000 0011222332 3599999999984 4456
Q ss_pred HHHHhhccCc---------------------------cccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHH
Q 003743 631 NQFLTELDGV---------------------------EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 683 (799)
Q Consensus 631 ~~ll~~ld~~---------------------------~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~ 683 (799)
+.|+..|+.- .+.+..+|++||+.|+.++|++++ |+. .++|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 6666665321 012235677788899999999999 774 6789999999999
Q ss_pred HHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 684 DILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 684 ~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
+|++..+++.++. ++..++.|+.++. +++++.++++.|+..|..+ ....|+.+|++.++..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhCC
Confidence 9999998876643 3333566666653 7899999998887666432 2347999999999864
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.60 E-value=3.5e-14 Score=145.45 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------eEEEEe
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------RFISVK 575 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------~~i~i~ 575 (799)
++.+..++++.|++.+++.|+..+.. +...++|||||||||||+.|+++|.++.. .+...+
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 45567899999999999999887764 12238999999999999999999998865 345556
Q ss_pred ccchhhhhhccc-HHHHHHHHHHhH--h----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEE
Q 003743 576 GPELLNKYIGAS-EQAVRDIFSKAT--A----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 648 (799)
Q Consensus 576 ~~~l~~~~~g~s-e~~i~~~f~~a~--~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlv 648 (799)
.++-.+.-++.. -+.+..+..... . ..+.|++|||+|.| ...+...|.+.|+... ..+.+
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~s--~~trF 162 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDFS--RTTRF 162 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhccc--cceEE
Confidence 666543322211 111111111110 0 11269999999998 4567889999998643 34555
Q ss_pred EEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 003743 649 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLS 721 (799)
Q Consensus 649 i~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~ 721 (799)
|..||+++.|.+.+.+ |.. .+.|++...+.....|+.++.+.+++ ++-.++.|+.++ ++|++.+..
T Consensus 163 iLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S----~GdLR~Ait 229 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKIS----DGDLRRAIT 229 (346)
T ss_pred EEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHH
Confidence 5679999999999998 664 55788878888888888888877764 222345555554 467776544
No 124
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.8e-14 Score=165.17 Aligned_cols=188 Identities=20% Similarity=0.246 Sum_probs=132.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++|+|++.+++.|+..+... +.+..+||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 345678999999999999998876531 122346999999999999999999988653
Q ss_pred -------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 571 -------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 571 -------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
++.+++.+ ...-..++++.+.+. .+...|+||||+|.| ....++.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHH
Confidence 11222211 011234566655443 244579999999999 45688999
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
|+.|+ +....+.+|.+|+.+..|.+.+++ |+ .++.|.+++.++....++.++...++. .+..+..|+..+.| +
T Consensus 140 LKtLE--EPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLE--EPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHh--ccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99997 445566666678888889999998 55 678999999999999998888765443 33346777777764 4
Q ss_pred HHHHHHHHHHHH
Q 003743 713 GADLQALLSDAQ 724 (799)
Q Consensus 713 g~di~~~~~~a~ 724 (799)
.+++.++|..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 455555554433
No 125
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.2e-14 Score=164.66 Aligned_cols=185 Identities=20% Similarity=0.269 Sum_probs=134.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 570 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------------ 570 (799)
+.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 45678999999999999998877631 122347999999999999999999988652
Q ss_pred ------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 571 ------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 571 ------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
++.+++..- ..-..++++.+.+. .+...|+||||+|.| .....+.||
T Consensus 78 ~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALL 140 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALL 140 (647)
T ss_pred HHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHH
Confidence 333433210 12244666655542 245679999999998 356789999
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+ +....+.+|.+|+.++.|.+.+++ |+ ..++|.+++.++....++.++...++. .+..+..|+..++| +.
T Consensus 141 KtLE--EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~ 214 (647)
T PRK07994 141 KTLE--EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SM 214 (647)
T ss_pred HHHH--cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9998 555667777778889999999998 64 788999999999999999888765543 33446777877774 44
Q ss_pred HHHHHHHHH
Q 003743 714 ADLQALLSD 722 (799)
Q Consensus 714 ~di~~~~~~ 722 (799)
+++.+++..
T Consensus 215 R~Al~lldq 223 (647)
T PRK07994 215 RDALSLTDQ 223 (647)
T ss_pred HHHHHHHHH
Confidence 555555543
No 126
>PRK04195 replication factor C large subunit; Provisional
Probab=99.60 E-value=2.6e-14 Score=164.08 Aligned_cols=191 Identities=25% Similarity=0.311 Sum_probs=135.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
++.+..+++++|.+++++.|..++..... + .++.++||+||||||||++|+++|++++.+++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 45567899999999999999998864321 1 23568999999999999999999999999999999987532
Q ss_pred hhhcccHHHHHHHHHHhHh------cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC
Q 003743 582 KYIGASEQAVRDIFSKATA------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 655 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~------~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~ 655 (799)
...+..+...+.. ..+.||+|||+|.+..+. ....++.|+..++. ....+|++||.+
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 2234444433321 256799999999986531 12345566666642 223455678888
Q ss_pred CccCh-hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHH
Q 003743 656 DLLDA-ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQL 725 (799)
Q Consensus 656 ~~ld~-al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~ 725 (799)
..+.+ .+++ ....|.|++|+..++..+++.++...++. .+..++.|+..+ ++|++.+++....
T Consensus 141 ~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~ 205 (482)
T PRK04195 141 YDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQA 205 (482)
T ss_pred cccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHH
Confidence 88877 5554 34679999999999999999988766553 233355566554 4688887775543
No 127
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.2e-14 Score=161.00 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=133.4
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc------
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------ 284 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------ 284 (799)
....|.+|++++|.+.+.+.+... +... ..+.++|||||||||||++|+++|+.+.....
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~----i~~~----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINA----LKKN----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHH----HHcC----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 445578899999998776655443 2211 23456999999999999999999999874211
Q ss_pred ------------eeeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhH
Q 003743 285 ------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSV 348 (799)
Q Consensus 285 ------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~ 348 (799)
....++.++.+.-. ... .++.+...+. .....|+||||+|.+..
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~~~--gid----~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-------------- 131 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAASNR--GID----EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-------------- 131 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCcccC--CHH----HHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------
Confidence 01134445443211 112 2333333322 13456999999999852
Q ss_pred HHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCH
Q 003743 349 IALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428 (799)
Q Consensus 349 ~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~ 428 (799)
..++.|+..++.... .+++|++|+.+..+++++++ |+. .+.|.+++.++...+++..+...++.+++
T Consensus 132 -~a~~~LLk~LE~p~~---------~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~ 198 (472)
T PRK14962 132 -EAFNALLKTLEEPPS---------HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDR 198 (472)
T ss_pred -HHHHHHHHHHHhCCC---------cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCH
Confidence 234556666665332 36667677777899999999 775 89999999999999999999988999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
++++.++..+.| +.+.+.+.++.+
T Consensus 199 eal~~Ia~~s~G-dlR~aln~Le~l 222 (472)
T PRK14962 199 EALSFIAKRASG-GLRDALTMLEQV 222 (472)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 999999998766 445554545443
No 128
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.2e-14 Score=165.11 Aligned_cols=198 Identities=16% Similarity=0.182 Sum_probs=141.5
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc--------
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------- 284 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~-------- 284 (799)
..+.+|++|+|.+.+++.+.+.+..- ..+..+||+||+|+|||++++.+|+.+.....
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g--------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ--------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC--------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 35678999999998888777655311 12345899999999999999999999974210
Q ss_pred ---------------eeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHH
Q 003743 285 ---------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 349 (799)
Q Consensus 285 ---------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~ 349 (799)
....+++++.+. ......+.+.+..+..........|+||||+|.|..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas--~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAAS--NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------
Confidence 001234444432 112233333333322222233456999999999952
Q ss_pred HHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH
Q 003743 350 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE 429 (799)
Q Consensus 350 ~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~ 429 (799)
..++.|+..+++... .+.||.+||.+..|.+.+++ |+. .+.|..++.++..+.+...+...++.++++
T Consensus 139 ~AaNALLKTLEEPP~---------~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~e 206 (700)
T PRK12323 139 HAFNAMLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVN 206 (700)
T ss_pred HHHHHHHHhhccCCC---------CceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHH
Confidence 345667776766432 37888889999999999999 774 899999999999999999999889999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 430 ILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 430 ~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
.+..|++.++| +.++..+++++++
T Consensus 207 AL~~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 207 ALRLLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999998877 6777777776655
No 129
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=3.6e-14 Score=154.53 Aligned_cols=197 Identities=19% Similarity=0.188 Sum_probs=135.5
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeE
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAH 288 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~ 288 (799)
|.....|.++++++|.+.+++.+.+. +... ...|+|||||||||||++|+++|+.+..... ...
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~----~~~~-----------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~ 66 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVI----ARDG-----------NMPNLILSGPPGTGKTTSILALAHELLGPNY-KEA 66 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHH----HhcC-----------CCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccc
Confidence 66667788999999998877665543 2211 1236999999999999999999999842211 134
Q ss_pred EEEEecccccccchhhHHHHHHHHHHHHH---hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003743 289 IVFVCCSRLSLEKGPIIRQALSNFISEAL---DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 365 (799)
Q Consensus 289 ~~~v~~s~l~~~~~~~~~~~l~~~~~~a~---~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~ 365 (799)
++.++.++..+ .......+........ .....|++|||+|.+.. ...+.|+..++.+..
T Consensus 67 ~~eln~sd~~~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------~aq~aL~~~lE~~~~- 128 (319)
T PLN03025 67 VLELNASDDRG--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------GAQQALRRTMEIYSN- 128 (319)
T ss_pred eeeeccccccc--HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------HHHHHHHHHHhcccC-
Confidence 55666665332 1223333322111100 12356999999999962 234455666654332
Q ss_pred cCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhh
Q 003743 366 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYD 445 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~d 445 (799)
...+|.+||....+.+++++ |+. .+.|++|+.++...+++..+..+++.++++.++.++..+.| +.+.
T Consensus 129 --------~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~ 196 (319)
T PLN03025 129 --------TTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQ 196 (319)
T ss_pred --------CceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 24577788888889999999 764 79999999999999999999999999999999999998766 3444
Q ss_pred HHHHHH
Q 003743 446 LEILVD 451 (799)
Q Consensus 446 l~~lv~ 451 (799)
+-+.++
T Consensus 197 aln~Lq 202 (319)
T PLN03025 197 ALNNLQ 202 (319)
T ss_pred HHHHHH
Confidence 444443
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.59 E-value=2.9e-14 Score=172.37 Aligned_cols=185 Identities=23% Similarity=0.319 Sum_probs=135.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEE
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 574 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i 574 (799)
+..++.++|.++....+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 35688999998876666655432 223489999999999999999999875 3567888
Q ss_pred eccchhh--hhhcccHHHHHHHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe
Q 003743 575 KGPELLN--KYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 575 ~~~~l~~--~~~g~se~~i~~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
+...+.. .|.|+.+..++.+|..++. ..++||||||+|.+.+.++..... .+.+.|...| ..+.+.+|||
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~n~Lkp~l----~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAANLLKPAL----ARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHHHHhhHHh----hCCCeEEEEe
Confidence 8877763 6889999999999999864 568899999999998765432211 1223333333 3456778888
Q ss_pred cCCCCc-----cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCC----C-CcccHHHHHHHCCCCc
Q 003743 652 TSRPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPL----A-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 652 tn~~~~-----ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~----~-~~~~~~~la~~~~g~s 712 (799)
|+..+. +|+||.| ||. .|.+++|+.+++..||+...+.+.. . .+..+..++..+.+|-
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 876433 8999999 995 7899999999999998766654332 1 3445667777776655
No 131
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=8.3e-14 Score=151.70 Aligned_cols=184 Identities=18% Similarity=0.189 Sum_probs=128.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEec
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKG 576 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~ 576 (799)
++.+..++++.|.+++.+.|+.++... ...++||+||||||||++|+++|+++ ...++.+++
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 456788999999999999988765531 12379999999999999999999986 234777887
Q ss_pred cchhhhhhcccHHHHHHHHHHh---H----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEE
Q 003743 577 PELLNKYIGASEQAVRDIFSKA---T----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVF 649 (799)
Q Consensus 577 ~~l~~~~~g~se~~i~~~f~~a---~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi 649 (799)
++..+ ...+++.++.. . .+.+.|++|||+|.+. ....+.|+..|+... ....+|
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~--~~t~~i 133 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYS--NTTRFA 133 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhccc--CCceEE
Confidence 76432 12233333221 1 1346799999999984 334667777776433 233455
Q ss_pred EecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHH
Q 003743 650 AATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQ 724 (799)
Q Consensus 650 ~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~ 724 (799)
.+||.++.+.+++++ |+ ..+.|++|+.++...+++..++..++. .+..++.++..+. +|++.+++...
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~Lq 202 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNNLQ 202 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHH
Confidence 578888888899998 65 578999999999999999888766553 2333555555544 67777766443
No 132
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8.2e-14 Score=154.16 Aligned_cols=204 Identities=22% Similarity=0.227 Sum_probs=139.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 570 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------------ 570 (799)
+.+..|++++|++.+++.+...+... +.+..+||+||||||||++|+++|+.+...
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45678999999999999998877531 122357999999999999999999987532
Q ss_pred ------------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 571 ------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 571 ------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
++.++++. ...-..++++.+.+.. +.+.|++|||+|.+. ....+.|+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHH
Confidence 22232211 0123456666665432 234699999999983 45677888
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+. ....+.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++.+++..+.. ++..++.++..+.| +.
T Consensus 141 k~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88873 34456666677788889999998 66 578999999999999999988776543 33446667777764 44
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 714 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 714 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
+++.+.+..+... +...||.+++.+++.
T Consensus 215 R~al~~l~~~~~~---------------~~~~It~~~v~~~l~ 242 (363)
T PRK14961 215 RDALNLLEHAINL---------------GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHh---------------cCCCCCHHHHHHHHC
Confidence 5544444433210 113578888877664
No 133
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.58 E-value=4.2e-14 Score=169.05 Aligned_cols=226 Identities=23% Similarity=0.263 Sum_probs=155.7
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh---------
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL--------- 580 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~--------- 580 (799)
+..|++.+|+.+.+++...... +......++|+||||||||++++.+|..++.+++.++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 5789999999998877632211 112334699999999999999999999999999988866532
Q ss_pred hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC-------------ccccCcEE
Q 003743 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-------------VEVLTGVF 647 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~-------------~~~~~~vl 647 (799)
..|.|.....+.+.+..+....| ||||||+|++.+.... ...+.|+..||. ....++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 24677776677777777665555 8999999999754221 133456655552 11346899
Q ss_pred EEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc-----CCCC---CcccHHHHHHHCCCCc----HHH
Q 003743 648 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK-----LPLA---DDVDLEAIAHMTEGFS----GAD 715 (799)
Q Consensus 648 vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~-----~~~~---~~~~~~~la~~~~g~s----g~d 715 (799)
+|+|+|.. .++++|++ ||. +|.|+.|+.++..+|.+.++.. .++. -.++.+.+..+.++|+ .+.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999887 59999999 995 7899999999999999877631 1111 1334444444333444 567
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 716 LQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 716 i~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
++..+......++.+.+.. .......|+.+++.+.+...
T Consensus 544 LeR~I~~i~r~~l~~~~~~----~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLD----KSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCceeeecHHHHHHHhCCC
Confidence 7777666666555554321 11233578999999888644
No 134
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.58 E-value=1.5e-14 Score=170.85 Aligned_cols=237 Identities=21% Similarity=0.285 Sum_probs=147.6
Q ss_pred CCCCCCCCCChHHHHH---HHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 504 GRSGWDDVGGLTDIQN---AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.+..+++++|++.+.. .+...+.. ....+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 4567889999988874 45444432 112479999999999999999999999999998887531
Q ss_pred hhhhcccHHHHHHHHHHhH-----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe-cCC
Q 003743 581 NKYIGASEQAVRDIFSKAT-----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA-TSR 654 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t-tn~ 654 (799)
+ ...++.++..+. .....||||||||.+.. ...+.|+..++ . ..+++|++ |..
T Consensus 89 ----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE---~-g~IiLI~aTTen 147 (725)
T PRK13341 89 ----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVE---N-GTITLIGATTEN 147 (725)
T ss_pred ----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhc---C-ceEEEEEecCCC
Confidence 1 123344444431 13456999999999842 33456666554 2 34555554 444
Q ss_pred C-CccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC-----CCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 003743 655 P-DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-----PLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAV 728 (799)
Q Consensus 655 ~-~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~-----~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~ 728 (799)
| ..+++++++ |. .++.|++++.+++..|++..+... ...-.++.+.+..+.. ++++|++.+++.... ++
T Consensus 148 p~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~-~s~GD~R~lln~Le~-a~ 222 (725)
T PRK13341 148 PYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVD-VANGDARSLLNALEL-AV 222 (725)
T ss_pred hHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHH-hCCCCHHHHHHHHHH-HH
Confidence 4 458999998 53 468999999999999999887621 0111233333333333 345677766552221 11
Q ss_pred HHHhcccCCCCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 003743 729 HEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAA 786 (799)
Q Consensus 729 ~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 786 (799)
... .. .......||.+++++++..... ..++....+++..++|.+|-++.++
T Consensus 223 ~~~----~~-~~~~~i~It~~~~~e~l~~~~~-~ydk~gd~hyd~Isa~~ksirgsD~ 274 (725)
T PRK13341 223 EST----PP-DEDGLIDITLAIAEESIQQRAV-LYDKEGDAHFDTISAFIKSLRGSDP 274 (725)
T ss_pred Hhc----cc-CCCCceeccHHHHHHHHHHhhh-hcccCCCCCHHHHHHHHHHHhcCCH
Confidence 110 00 0111234888888888865322 2333333577888889888877653
No 135
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4e-14 Score=161.44 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=140.7
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc--------
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------- 284 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~-------- 284 (799)
..+.+|++|+|.+.+++.+.+.+.. -..+..+||+||||+|||++|+++|+.++....
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~--------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALER--------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 3467899999999887777665531 123456899999999999999999999874210
Q ss_pred ----------eeeEEEEEecccccccchhhHHHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 003743 285 ----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 350 (799)
Q Consensus 285 ----------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~ 350 (799)
....++.++.+.-. ... .++.++..+ ......|++|||+|.|.. .
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~~--~Vd----dIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~ 133 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASRT--KVE----DTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------H 133 (702)
T ss_pred CHHHHHHhcCCCCceEEecccccC--CHH----HHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------H
Confidence 01134444443211 122 234444333 223456999999999852 3
Q ss_pred HHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH
Q 003743 351 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 430 (799)
Q Consensus 351 l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~ 430 (799)
.++.|+..++.... .+.+|++|+.+..+++.+++ |+. ++.|.+++.++..+.++..+...++.++++.
T Consensus 134 A~NALLKtLEEPP~---------~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eA 201 (702)
T PRK14960 134 SFNALLKTLEEPPE---------HVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDA 201 (702)
T ss_pred HHHHHHHHHhcCCC---------CcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 45667777765432 36777788888888889888 775 8999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHH
Q 003743 431 LLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 431 l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+..++..+.| +.+++.+++..++
T Consensus 202 L~~IA~~S~G-dLRdALnLLDQaI 224 (702)
T PRK14960 202 IWQIAESAQG-SLRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999876 7777777777665
No 136
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-14 Score=162.60 Aligned_cols=203 Identities=21% Similarity=0.290 Sum_probs=145.2
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh---------
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL--------- 580 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~--------- 580 (799)
+-.|++++|+.+.+++.-... .+.....-++|+||||+|||++++.+|..++..|++++..-+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 457999999999998863211 1222334578999999999999999999999999999865432
Q ss_pred hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC-------------ccccCcEE
Q 003743 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-------------VEVLTGVF 647 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~-------------~~~~~~vl 647 (799)
..|+|....++-+.++...-..| +++|||||++...-.++.. . .||..||. --..+.|+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa----s---ALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA----S---ALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH----H---HHHHhcChhhccchhhhccccccchhheE
Confidence 35999999999999999988888 8889999999743222222 2 33333331 12346799
Q ss_pred EEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHc-----cCCCCC---ccc----HHHHHHHCCCCc---
Q 003743 648 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR-----KLPLAD---DVD----LEAIAHMTEGFS--- 712 (799)
Q Consensus 648 vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~-----~~~~~~---~~~----~~~la~~~~g~s--- 712 (799)
+|||.|..+.|+++|+. |+ .+|.++-|..++..+|.+.++- ..++.+ ++. ..-|..++. =+
T Consensus 557 FicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr-EaGVR 632 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR-EAGVR 632 (906)
T ss_pred EEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH-HHhHH
Confidence 99999999999999999 88 5789999999999999987753 223321 112 222333332 11
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q 003743 713 --GADLQALLSDAQLSAVHEI 731 (799)
Q Consensus 713 --g~di~~~~~~a~~~a~~~~ 731 (799)
-..|.++|+.++..-++..
T Consensus 633 nLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 633 NLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 2566677888877766654
No 137
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.9e-14 Score=163.04 Aligned_cols=206 Identities=17% Similarity=0.203 Sum_probs=144.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 345678999999999999999887531 122357999999999999999999987542
Q ss_pred -------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 571 -------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 571 -------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
+++++++. ...-..++++.+.+. .+...|+||||+|.|. ....+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHH
Confidence 55555432 122345666666543 2445799999999984 4567889
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
++.|+. ....+.+|.+|+.+..+.+.+++ |+ ..++|.+++.++....++.++...++. .+..+..|+..+.| +
T Consensus 140 Lk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 999974 34556666677888888888988 55 567899999999998888888776654 33446677777764 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 713 GADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 713 g~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
.+++.+++..+... +...||.+++.+.+..
T Consensus 214 lR~al~lLdq~ia~---------------~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 214 VRDALSLLDQSIAY---------------GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHHHHHHhc---------------CCCCcCHHHHHHHHCC
Confidence 55555555433210 0125777777776643
No 138
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.57 E-value=5.7e-14 Score=161.68 Aligned_cols=220 Identities=16% Similarity=0.159 Sum_probs=141.4
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEeccc
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPE 578 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~~~~ 578 (799)
+.|.+-++..+.|..++...+. +..+...++++|+||||||++++.+..++ .+.+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 4567777777777776653322 11222235699999999999999998765 26689999965
Q ss_pred hhhhh----------------hc-ccHHHHHHHHHHhH--hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC
Q 003743 579 LLNKY----------------IG-ASEQAVRDIFSKAT--AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG 639 (799)
Q Consensus 579 l~~~~----------------~g-~se~~i~~~f~~a~--~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~ 639 (799)
+...+ .| .+...+..+|.... .....||+|||||.|..+ ...++..|..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh-
Confidence 43221 01 12234566666542 234579999999999754 2344555555432
Q ss_pred ccccCcEEEEEecCC---CCccChhhcCCCCcce-eeecCCCCHHHHHHHHHHHHccCC-CCCcccHHHHHHHCCCCcHH
Q 003743 640 VEVLTGVFVFAATSR---PDLLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRKLP-LADDVDLEAIAHMTEGFSGA 714 (799)
Q Consensus 640 ~~~~~~vlvi~ttn~---~~~ld~al~r~gRf~~-~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~~~~la~~~~g~sg~ 714 (799)
.....++|||++|. ++.++|.+.+ ||.. .+.|+||+.+++.+||+.++.... +-.+..++.+|+.+. -..+
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SG 973 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSG 973 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCC
Confidence 23457899999986 4558888888 6653 478999999999999999888542 223333566666544 3457
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC
Q 003743 715 DLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 715 di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~ 760 (799)
|+|.++.-. ..|++. . ....|+.+|+.+|+..+..
T Consensus 974 DARKALDIL-RrAgEi-----k-----egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 974 DIRKALQIC-RKAFEN-----K-----RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHH-HHHHhh-----c-----CCCccCHHHHHHHHHHHHh
Confidence 888765422 222221 1 1237999999999876643
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=2.4e-14 Score=173.56 Aligned_cols=166 Identities=25% Similarity=0.364 Sum_probs=128.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..++.++|.+...+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 5678899998877777665543 223489999999999999999999987 78899998
Q ss_pred ccchh--hhhhcccHHHHHHHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEec
Q 003743 576 GPELL--NKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 652 (799)
Q Consensus 576 ~~~l~--~~~~g~se~~i~~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~tt 652 (799)
...+. .+|.|+.+..++.+|..+. ...|+||||||+|.+.+.+..... ..+.+-|...| ..+.+.+||+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~---~d~~~~lkp~l----~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPAL----ARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc---hhHHHHhcchh----hcCCCeEEEcC
Confidence 88876 4688999999999999864 467899999999999876532221 12333333333 35568888888
Q ss_pred CCCCc-----cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCC
Q 003743 653 SRPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP 694 (799)
Q Consensus 653 n~~~~-----ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~ 694 (799)
+..+. +|+++.| ||+ .|.++.|+.+++..|++.....+.
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 87763 8999999 997 578999999999999987765543
No 140
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.6e-14 Score=163.53 Aligned_cols=197 Identities=20% Similarity=0.246 Sum_probs=138.6
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+.+|++|+|.+.+++.+.+.+.. . ..+..+||+||||||||++|+++|+.++.....
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~----~----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ----Q----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh----C----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 467899999999888776654421 1 124457999999999999999999999743110
Q ss_pred ----------eeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 003743 286 ----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 355 (799)
Q Consensus 286 ----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~L 355 (799)
...+++++.+.. .....++..+..+......+...|+||||+|.|.. ..++.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas~--~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASR--TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEeccccc--cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHH
Confidence 001222322210 11222333222222112223456999999999962 466777
Q ss_pred HHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHH
Q 003743 356 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 435 (799)
Q Consensus 356 l~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la 435 (799)
+..++.... .+.+|++|+.+..|.+.+++ |+. ++.|.+++.++....++..+...++.++++.+..|+
T Consensus 140 LKtLEEPP~---------~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 140 LKTLEEPPE---------HVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred HHHHhccCC---------CeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 887876443 36777778888889999999 764 899999999999999999998888999999999999
Q ss_pred hhcCCCChhhHHHHHHHHH
Q 003743 436 SKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 436 ~~~~g~s~~dl~~lv~~A~ 454 (799)
..+.| ++++..+++.+++
T Consensus 208 ~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 208 KAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 99877 5777777777655
No 141
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.4e-14 Score=157.80 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=138.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC-------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS------------- 568 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~------------- 568 (799)
++.+..|++++|++.+.+.|...+... +.+.++||+||||+|||++|+++|+.++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 345678999999999999998776531 2344799999999999999999998642
Q ss_pred -----------CeEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 569 -----------LRFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 569 -----------~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
..++++++++- ..-..++++.+.+.. +.+.|++|||+|.|. ...++.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHH
Confidence 24566666432 233567777776643 345699999999983 4578899
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
++.|+. ....+.+|.+|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..+...++. ++..++.|+..+.| +
T Consensus 137 LK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999984 44556667777888889999998 55 568999999999999999988876654 44456777877764 5
Q ss_pred HHHHHHHHHHH
Q 003743 713 GADLQALLSDA 723 (799)
Q Consensus 713 g~di~~~~~~a 723 (799)
.+++.+.+..+
T Consensus 211 lR~alslLdql 221 (491)
T PRK14964 211 MRNALFLLEQA 221 (491)
T ss_pred HHHHHHHHHHH
Confidence 56655555544
No 142
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.5e-14 Score=161.43 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=141.1
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc--------
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------- 284 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~-------- 284 (799)
..+.+|++|+|.+.+++.+.+.+.. . ..+..+||+||||||||++|+++|+.++....
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~----~----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ----Q----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh----C----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 3567899999999988877776522 1 12345899999999999999999999974311
Q ss_pred ----------eeeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 003743 285 ----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 350 (799)
Q Consensus 285 ----------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~ 350 (799)
....+++++.+.- ..... ++.++..+. .....|++|||+|.+.. .
T Consensus 76 C~~C~~i~~g~~~d~~eidaas~--~~v~~----iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~ 134 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAASR--TKVED----TRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------H 134 (509)
T ss_pred CHHHHHHhcCCCceEEEEccccc--CCHHH----HHHHHHHHhhccccCCcEEEEEEChHhcCH---------------H
Confidence 1112455554321 11222 344444332 23345999999999962 3
Q ss_pred HHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH
Q 003743 351 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 430 (799)
Q Consensus 351 l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~ 430 (799)
.++.|+..++.... .+.+|.+|+.+..+.+.+++ |+. .++|.+++..+....+...+...++.++++.
T Consensus 135 a~naLLk~LEepp~---------~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~a 202 (509)
T PRK14958 135 SFNALLKTLEEPPS---------HVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAA 202 (509)
T ss_pred HHHHHHHHHhccCC---------CeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 45667777776432 36777777888889888998 764 7899999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHH
Q 003743 431 LLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 431 l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+..+++.+.| +.+++.++++.++
T Consensus 203 l~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 203 LDLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHH
Confidence 9999998876 7888888887765
No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=99.56 E-value=7.6e-14 Score=144.50 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=111.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~ 335 (799)
+.++||||||||||+|++++|+++.... ....+++...... .....+... ....+|+|||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIGN 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcCC
Confidence 4589999999999999999999975432 2334454432111 111223333 34579999999988631
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccc---hhhhccCceeEEEeccCCCHHHHH
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRFDFHVQLPAPAASERK 412 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld---~aL~r~gRf~~~i~~~~p~~~er~ 412 (799)
. .....|...++.....+. .+++++++..|..++ +.|+++.++...+.+++|+.+++.
T Consensus 107 ~-------------~~~~~l~~l~n~~~~~~~------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 107 E-------------EWELAIFDLFNRIKEQGK------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred h-------------HHHHHHHHHHHHHHHcCC------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 1 111223334443332211 244555555666654 899996666778999999999999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 413 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 413 ~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+|++..+..+++.+++++++++++.+.| +.+.+..++...
T Consensus 168 ~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 9999999999999999999999999876 566666666554
No 144
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.56 E-value=9.1e-14 Score=154.63 Aligned_cols=220 Identities=18% Similarity=0.180 Sum_probs=140.4
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC---------CeEEEEeccch
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKGPEL 579 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~---------~~~i~i~~~~l 579 (799)
+++.|-++..+.|...+..... + ..+.+++++||||||||++++++++.+. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4678888888888777653221 1 2335799999999999999999997652 57888998654
Q ss_pred hhh----------hh--cc-------c-HHHHHHHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhcc
Q 003743 580 LNK----------YI--GA-------S-EQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 638 (799)
Q Consensus 580 ~~~----------~~--g~-------s-e~~i~~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld 638 (799)
.+. .. |. + .+.+..+++... ...+.||+|||+|.+... ...++..|+...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DDDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------CcHHHHhHhcccc
Confidence 321 11 11 1 223344554443 355789999999999732 1235556665522
Q ss_pred Ccc-ccCcEEEEEecCCCCc---cChhhcCCCCcc-eeeecCCCCHHHHHHHHHHHHccCCCCCccc---HHHHHHHCCC
Q 003743 639 GVE-VLTGVFVFAATSRPDL---LDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLPLADDVD---LEAIAHMTEG 710 (799)
Q Consensus 639 ~~~-~~~~vlvi~ttn~~~~---ld~al~r~gRf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~---~~~la~~~~g 710 (799)
... ...++.+|+++|.++. +++.+.+ ||. ..++|++|+.+++.+|++.++........++ ++.++..+.
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~- 234 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA- 234 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH-
Confidence 111 2356888889998864 7888887 775 6789999999999999998876321111122 333444332
Q ss_pred CcHHHHHH---HHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcC
Q 003743 711 FSGADLQA---LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR 759 (799)
Q Consensus 711 ~sg~di~~---~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~ 759 (799)
.+.+|++. +|+.|+..|..+ +...||.+|+..|+..+.
T Consensus 235 ~~~Gd~R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 235 QEHGDARKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHHH
Confidence 22234443 555555555332 235799999998877654
No 145
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=2.1e-13 Score=149.98 Aligned_cols=199 Identities=18% Similarity=0.232 Sum_probs=132.8
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....+..|++++|.+.+++.+.+.+ .. +...++||+||||||||++|+++++++.... ...
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~----~~-----------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~ 67 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAV----DS-----------PNLPHLLVQGPPGSGKTAAVRALARELYGDP-WEN 67 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHH----hC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccc
Confidence 5777778889999999887766655533 21 1123699999999999999999999986332 113
Q ss_pred EEEEEecccccccchh--------------------hHHHHHHHHHHHHHh-----cCCcEEEEccccccccCCCCCCCC
Q 003743 288 HIVFVCCSRLSLEKGP--------------------IIRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGS 342 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~--------------------~~~~~l~~~~~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~ 342 (799)
.+++++++++...... .....++.+...... ..+.+|+|||+|.+..
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------- 139 (337)
T PRK12402 68 NFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------- 139 (337)
T ss_pred ceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------
Confidence 4567787664321100 011223333322221 2346999999998841
Q ss_pred CCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhc
Q 003743 343 QPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR 422 (799)
Q Consensus 343 ~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~ 422 (799)
.....|...++.... ...+|.+++.+..+.+.+.+ |+. .+.+++|+.+++..+++..+...
T Consensus 140 -------~~~~~L~~~le~~~~---------~~~~Il~~~~~~~~~~~L~s--r~~-~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 140 -------DAQQALRRIMEQYSR---------TCRFIIATRQPSKLIPPIRS--RCL-PLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred -------HHHHHHHHHHHhccC---------CCeEEEEeCChhhCchhhcC--Cce-EEEecCCCHHHHHHHHHHHHHHc
Confidence 223445555554332 13455556566677788888 654 78999999999999999999999
Q ss_pred ccCCCHHHHHHHHhhcCCCChhhHHHHH
Q 003743 423 SLECSDEILLDVASKCDGYDAYDLEILV 450 (799)
Q Consensus 423 ~~~~~~~~l~~la~~~~g~s~~dl~~lv 450 (799)
++.+++++++.++..+.| +.+.+.+.+
T Consensus 201 ~~~~~~~al~~l~~~~~g-dlr~l~~~l 227 (337)
T PRK12402 201 GVDYDDDGLELIAYYAGG-DLRKAILTL 227 (337)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 999999999999998844 444443333
No 146
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.4e-13 Score=156.39 Aligned_cols=198 Identities=22% Similarity=0.242 Sum_probs=141.8
Q ss_pred ccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce----
Q 003743 210 STQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---- 285 (799)
Q Consensus 210 ~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~---- 285 (799)
.....+..|++++|.+.++..+.+.+.. -..+.++||+||||||||++|+++|+.++.....
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN--------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 3445678899999999887766553321 1235679999999999999999999999742110
Q ss_pred ------------------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCC
Q 003743 286 ------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQ 343 (799)
Q Consensus 286 ------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~ 343 (799)
...+++++.+.- ... +.++.++..+. .....|++|||+|.+..
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~--~~v----d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------- 142 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASK--TSV----DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------- 142 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCC--CCH----HHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------
Confidence 012333333221 112 23444554443 23456999999999852
Q ss_pred CchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc
Q 003743 344 PSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS 423 (799)
Q Consensus 344 ~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~ 423 (799)
..++.|+..++.... .+++|++|+.++.+++++++ |+. .+.|.+++.++...+++..+...+
T Consensus 143 ------~a~naLLk~LEepp~---------~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 143 ------GAFNALLKTLEEPPP---------HIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred ------HHHHHHHHHHhhcCC---------CEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcC
Confidence 335556666664322 36777777888899999998 774 789999999999999999999999
Q ss_pred cCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 424 LECSDEILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 424 ~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
+.++++++..++..+.| +.+++.++++.++.
T Consensus 205 i~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~ 235 (507)
T PRK06645 205 LKTDIEALRIIAYKSEG-SARDAVSILDQAAS 235 (507)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 99999999999998877 78888888877754
No 147
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1e-13 Score=156.13 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=143.0
Q ss_pred CCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC--------
Q 003743 212 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-------- 283 (799)
Q Consensus 212 ~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~-------- 283 (799)
...+.+|++++|.+.+++.+.+.+. .. ..+.++||+||||+|||++|+.+|+.++...
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~----~~----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT----LN----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----cC----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 4457889999999887765554332 11 2356799999999999999999999875321
Q ss_pred ----------ceeeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHH
Q 003743 284 ----------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 349 (799)
Q Consensus 284 ----------~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~ 349 (799)
.....+++++.+.-. .... ++.++..+. .....|++|||+|.+..
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~--~vdd----IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------- 130 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNT--SVDD----IKVILENSCYLPISSKFKVYIIDEVHMLSN--------------- 130 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCC--CHHH----HHHHHHHHHhccccCCceEEEEeChHhCCH---------------
Confidence 112345666665322 1222 444444432 23456999999999852
Q ss_pred HHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH
Q 003743 350 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE 429 (799)
Q Consensus 350 ~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~ 429 (799)
..++.|+..++.... .+.+|++|+.++.+.+.+++ |+. .+.|.+++.++....+...+...++.++++
T Consensus 131 ~A~NaLLK~LEePp~---------~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~e 198 (491)
T PRK14964 131 SAFNALLKTLEEPAP---------HVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEE 198 (491)
T ss_pred HHHHHHHHHHhCCCC---------CeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHH
Confidence 345667777776432 36777778888889999999 775 799999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 430 ILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 430 ~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
.+..+++.+.| +.+++.++++.++.
T Consensus 199 AL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 199 SLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 99999999876 77788777777653
No 148
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9e-14 Score=159.54 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=127.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 570 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------------ 570 (799)
+.+..|++|+|++.+++.|...+... +....+||+||||||||++|+++|+.+...
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 45678999999999999998877631 122479999999999999999999988642
Q ss_pred ------------EEEEeccchhhhhhcccHHHHHHHHHHh----HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 571 ------------FISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 571 ------------~i~i~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
++.+++..- ..-..++.+.+.+ ..+...||||||+|.|. ...++.|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLL 140 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALL 140 (624)
T ss_pred HHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHH
Confidence 444443211 1122344433322 22445799999999983 45678899
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+. ....+++|.+|+.++.+.+.+++ |+ .++.|++++.++...+++..+...++. .+..++.|+..+.
T Consensus 141 k~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~---- 211 (624)
T PRK14959 141 KTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA---- 211 (624)
T ss_pred HHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----
Confidence 98873 44567777888888888888888 66 467999999999999998888766542 3334566666655
Q ss_pred HHHHHHHH
Q 003743 714 ADLQALLS 721 (799)
Q Consensus 714 ~di~~~~~ 721 (799)
++++.+++
T Consensus 212 GdlR~Al~ 219 (624)
T PRK14959 212 GSVRDSMS 219 (624)
T ss_pred CCHHHHHH
Confidence 45554444
No 149
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.9e-13 Score=158.42 Aligned_cols=184 Identities=25% Similarity=0.314 Sum_probs=134.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|++.+.+.|...+... +.+..+||+||+|||||++|+.+|+.+.+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 35678999999999999998887631 22345899999999999999999998642
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
+++.++++. +..-..++++...+.. +.+.|++|||+|.|. ....+.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHH
Confidence 345554432 2234567777776542 345799999999983 45788999
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|++|+.++...+++.++++.++. ++..+..++..+.| +.
T Consensus 141 KtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 98873 44556666677788999999998 66 467899999999999999988776653 33446677777764 45
Q ss_pred HHHHHHHH
Q 003743 714 ADLQALLS 721 (799)
Q Consensus 714 ~di~~~~~ 721 (799)
+++.+.+.
T Consensus 215 R~al~~Ld 222 (559)
T PRK05563 215 RDALSILD 222 (559)
T ss_pred HHHHHHHH
Confidence 55544444
No 150
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=1.1e-13 Score=152.13 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=137.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC-----CeEEEEec
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKG 576 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~-----~~~i~i~~ 576 (799)
++.+..|+++.|.+++++.|...+... ...++||+||||||||++|+++++.+. .+++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345677999999999999998876531 113799999999999999999999873 45788888
Q ss_pred cchhhhh-------------hcc-------cHHHHHHHHHHhHh-----cCCeEEEEcccccccCCCCCCCCchhhHHHH
Q 003743 577 PELLNKY-------------IGA-------SEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 631 (799)
Q Consensus 577 ~~l~~~~-------------~g~-------se~~i~~~f~~a~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~ 631 (799)
+++.... .+. ....++.+.+.... ..+.+|+|||+|.+. ....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHH
Confidence 7754221 111 11234444433322 234699999999883 23345
Q ss_pred HHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCC
Q 003743 632 QFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 710 (799)
Q Consensus 632 ~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 710 (799)
.|...++..... ..+|.+|+.+..+.+.+.+ |+ ..+.|++|+.+++.++++..+...++. .+..++.|+..+
T Consensus 144 ~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 566666543322 3344456666777788887 65 568999999999999999888776654 333455556554
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 711 FSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 711 ~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
++|++.+++.....+ . ....||.+++.+++..
T Consensus 217 --~gdlr~l~~~l~~~~-----~--------~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 217 --GGDLRKAILTLQTAA-----L--------AAGEITMEAAYEALGD 248 (337)
T ss_pred --CCCHHHHHHHHHHHH-----H--------cCCCCCHHHHHHHhCC
Confidence 467777665443322 0 0125888888776653
No 151
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.9e-13 Score=157.51 Aligned_cols=206 Identities=18% Similarity=0.254 Sum_probs=144.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 445688999999999999999887631 223468999999999999999999987542
Q ss_pred -------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 571 -------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 571 -------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
++.++.+. +.....++++++.+. .+...|+||||+|.| ....++.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHH
Confidence 23333221 122346777776553 234579999999987 34567889
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
++.|+. ....+.+|.+|+.+..+.+.+++ |+ ..+.|++++.++...+++.++...++. ++..+..|++.+.| +
T Consensus 140 LKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 998873 34556677778889999888887 66 567888999999999999998877654 33446777777763 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 713 GADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 713 g~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
.+++.+++..+.... ...|+.+++...+..
T Consensus 214 lRdAlnLLDqaia~g---------------~g~It~e~V~~lLG~ 243 (709)
T PRK08691 214 MRDALSLLDQAIALG---------------SGKVAENDVRQMIGA 243 (709)
T ss_pred HHHHHHHHHHHHHhc---------------CCCcCHHHHHHHHcc
Confidence 555555554332210 124677777766543
No 152
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.6e-13 Score=158.97 Aligned_cols=197 Identities=19% Similarity=0.262 Sum_probs=139.2
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+.+|++|+|.+.+++.+.+.+.. . ..+..+||+||+|+|||++|+.+|+.++.....
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~----~----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL----G----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 467899999999888766654421 1 123448999999999999999999998742110
Q ss_pred ----------eeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 003743 286 ----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 355 (799)
Q Consensus 286 ----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~L 355 (799)
...+++++.+.- .....++..+..+......+...|+||||+|.|.. ..++.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHH
Confidence 012333443321 11223333222222222223456999999999962 456677
Q ss_pred HHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHH
Q 003743 356 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 435 (799)
Q Consensus 356 l~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la 435 (799)
+..++.... .+.+|.+|+.+..+.+.+++ |+ ..+.|.+++.++....+...+...++.++++.+..++
T Consensus 140 LKtLEEPp~---------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia 207 (647)
T PRK07994 140 LKTLEEPPE---------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLA 207 (647)
T ss_pred HHHHHcCCC---------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 777776433 37777788889999999999 86 5899999999999999999998889999999999999
Q ss_pred hhcCCCChhhHHHHHHHHH
Q 003743 436 SKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 436 ~~~~g~s~~dl~~lv~~A~ 454 (799)
..+.| +.++..+++++++
T Consensus 208 ~~s~G-s~R~Al~lldqai 225 (647)
T PRK07994 208 RAADG-SMRDALSLTDQAI 225 (647)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 98877 5677777776655
No 153
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=9.2e-14 Score=153.76 Aligned_cols=187 Identities=18% Similarity=0.210 Sum_probs=129.9
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe---------------
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 570 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~--------------- 570 (799)
..|++|+|++.+++.|+..+........ ..+...+..+||+||||+|||++|+++|..+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 4589999999999999999886543221 1223345679999999999999999999876432
Q ss_pred --------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhcc
Q 003743 571 --------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 638 (799)
Q Consensus 571 --------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld 638 (799)
+..+.+.. . .-.-..++++++.+.. +.+.|+||||+|.+. ....+.|++.|+
T Consensus 79 ~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhh
Confidence 11222111 0 1123457888877643 345699999999993 446688999997
Q ss_pred CccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHH
Q 003743 639 GVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQA 718 (799)
Q Consensus 639 ~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~ 718 (799)
. +..++++|.+|+.++.+.|++++ |+ ..++|++|+.++..+++... .++. ......++..+.|..+..+.-
T Consensus 143 e--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 E--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred c--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 3 33444444455558999999999 65 68899999999988777632 2332 334667888999888766554
Q ss_pred HH
Q 003743 719 LL 720 (799)
Q Consensus 719 ~~ 720 (799)
+.
T Consensus 214 ~~ 215 (394)
T PRK07940 214 AT 215 (394)
T ss_pred hc
Confidence 43
No 154
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=157.29 Aligned_cols=205 Identities=18% Similarity=0.218 Sum_probs=141.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++++|++.+++.|...+... ..+..+||+||||||||++|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 345678999999999999998887641 12234699999999999999999998742
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
.++.++++.- ..-..++++.+.+. ...+.|++|||+|.+ ....++.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHHH
Confidence 2455554321 12344566544443 245679999999977 345678888
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+. ....+++|.+|+.+..+.+.+.+ |+ ..+.|++|+.++....++.++...++. ++-.+..|+..+.
T Consensus 138 k~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~---- 208 (504)
T PRK14963 138 KTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD---- 208 (504)
T ss_pred HHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----
Confidence 88873 34456666778889999999998 65 478999999999999999988776654 3334566666665
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 714 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 714 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
+|++.+.+..... +.. ...||.+++..++..
T Consensus 209 GdlR~aln~Lekl-----~~~--------~~~It~~~V~~~l~~ 239 (504)
T PRK14963 209 GAMRDAESLLERL-----LAL--------GTPVTRKQVEEALGL 239 (504)
T ss_pred CCHHHHHHHHHHH-----Hhc--------CCCCCHHHHHHHHCC
Confidence 4666554432221 110 124888888776643
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.53 E-value=1.5e-13 Score=156.56 Aligned_cols=272 Identities=17% Similarity=0.265 Sum_probs=163.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
++++||||||||||+|++++++++..... ...++++++.++.......... ....+.... ..+.+|+|||+|.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY--RSVDVLLIDDIQFLAG 225 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH--hcCCEEEEehhhhhcC
Confidence 46999999999999999999999864321 1457788887764333222221 111222222 3577999999999863
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCcee--EEEeccCCCHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 409 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf~--~~i~~~~p~~~ 409 (799)
.. .....+...++...... ..++|++...|.. +++++++ ||. ..+.+.+|+.+
T Consensus 226 ~~-------------~~~~~l~~~~n~l~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 226 KE-------------RTQEEFFHTFNALHEAG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLE 283 (450)
T ss_pred CH-------------HHHHHHHHHHHHHHHCC-------CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHH
Confidence 11 11222333333332221 1455655555544 6788998 774 68999999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccccc
Q 003743 410 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 489 (799)
Q Consensus 410 er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~ 489 (799)
+|.+|++..+...++.++++++++++..+.+ +.++|..++......+... ...++.+.+..++....
T Consensus 284 ~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 284 TRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------GKPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHhh
Confidence 9999999999998999999999999998876 6777777777655433211 12355555555544321
Q ss_pred ccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC
Q 003743 490 PVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 569 (799)
Q Consensus 490 p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~ 569 (799)
... ..-...+.+.+.+.+.+... ..+ |.|+.-.-+-..||.+|-.+-.
T Consensus 351 ~~~----------------~~~~~~~~i~~~v~~~~~i~--~~~--------------l~~~~R~~~~~~aR~iamyl~~ 398 (450)
T PRK00149 351 AAQ----------------KKKITIENIQKVVAEYYNIK--VSD--------------LKSKSRTRNIARPRQIAMYLAK 398 (450)
T ss_pred ccC----------------CCCCCHHHHHHHHHHHcCCC--HHH--------------HhCCCCCcccChHHHHHHHHHH
Confidence 100 01134566666666655421 111 2334444344567777776655
Q ss_pred eEEEEeccchhhhhhcccHHHHHHHHHH
Q 003743 570 RFISVKGPELLNKYIGASEQAVRDIFSK 597 (799)
Q Consensus 570 ~~i~i~~~~l~~~~~g~se~~i~~~f~~ 597 (799)
.+...+.+++-..+-|.....+....++
T Consensus 399 ~~~~~s~~~Ig~~fg~rdhstV~~a~~~ 426 (450)
T PRK00149 399 ELTDLSLPEIGRAFGGRDHTTVLHAVRK 426 (450)
T ss_pred HhcCCCHHHHHHHcCCCCHhHHHHHHHH
Confidence 5555555555433334554444444433
No 156
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=1.5e-13 Score=152.77 Aligned_cols=238 Identities=21% Similarity=0.219 Sum_probs=151.6
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhh---CCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh-hhhhc
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQ---APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIG 585 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~-~~~~g 585 (799)
.++|++.+++.+...+..+.+.-..... ....+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3799999999997665432111100000 0112356899999999999999999999999999999998875 36888
Q ss_pred ccHHH-HHHHHHHh----HhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCcc-----------ccCcE
Q 003743 586 ASEQA-VRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVE-----------VLTGV 646 (799)
Q Consensus 586 ~se~~-i~~~f~~a----~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~-----------~~~~v 646 (799)
..... +..++..+ ....++||||||||++..++.+.+ ......+++.||+.|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 76443 44544432 234678999999999987632211 1112368899999998531 01124
Q ss_pred EEEEecCCCC----------------------------------------------------ccChhhcCCCCcceeeec
Q 003743 647 FVFAATSRPD----------------------------------------------------LLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 647 lvi~ttn~~~----------------------------------------------------~ld~al~r~gRf~~~i~~ 674 (799)
++|.|+|-.. -+.|.|+- |++.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeec
Confidence 4454544300 02344544 99999999
Q ss_pred CCCCHHHHHHHHHH----HHc-------cCCCCCccc---HHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 675 DFPSPRERLDILKV----ISR-------KLPLADDVD---LEAIAHM--TEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 675 ~~p~~~~r~~Il~~----~~~-------~~~~~~~~~---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
.+.+.+++.+|+.. .++ ..++.-.++ ++.|++. ..++-.+.|+.+++......+.+....
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~---- 385 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR---- 385 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc----
Confidence 99999999999962 222 222322233 4555553 334557888888887777776655431
Q ss_pred CCCCCCcccHHHHHH
Q 003743 739 EPGKMPVITDALLKS 753 (799)
Q Consensus 739 ~~~~~~~it~e~l~~ 753 (799)
.......||.+.+..
T Consensus 386 ~~~~~v~I~~~~v~~ 400 (412)
T PRK05342 386 EDVEKVVITKEVVEG 400 (412)
T ss_pred CCCceEEECHHHhcc
Confidence 112345688888753
No 157
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.53 E-value=3e-13 Score=147.45 Aligned_cols=184 Identities=20% Similarity=0.312 Sum_probs=130.0
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....|.++++++|.+.+.+.+.+.+.. . ..+..+||+||||+|||++++++++.++ .
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~----~----------~~~~~lll~G~~G~GKT~la~~l~~~~~------~ 69 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKK----G----------RIPNMLLHSPSPGTGKTTVAKALCNEVG------A 69 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhc----C----------CCCeEEEeeCcCCCCHHHHHHHHHHHhC------c
Confidence 466667788999999999888877776541 1 1345577799999999999999999987 5
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
.+.+++++. .. .......+........ ...+.+|+|||+|.+.. . .....|...++....
T Consensus 70 ~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~----~~~~~L~~~le~~~~-- 130 (316)
T PHA02544 70 EVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------A----DAQRHLRSFMEAYSK-- 130 (316)
T ss_pred cceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------H----HHHHHHHHHHHhcCC--
Confidence 677888877 22 2223233333222221 13567999999998831 0 223444555555332
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHH-------hhhcccCCCHHHHHHHHhhcC
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE-------IQRRSLECSDEILLDVASKCD 439 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~-------l~~~~~~~~~~~l~~la~~~~ 439 (799)
.+.+|+++|.+..+++++++ |+. .+.|+.|+.+++.+++..+ +...+..++++++..++....
T Consensus 131 -------~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 131 -------NCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred -------CceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 36788899999999999999 886 7899999999998776644 334677888999999988766
Q ss_pred C
Q 003743 440 G 440 (799)
Q Consensus 440 g 440 (799)
+
T Consensus 201 ~ 201 (316)
T PHA02544 201 P 201 (316)
T ss_pred C
Confidence 5
No 158
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.6e-13 Score=156.37 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=141.6
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce-------
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------- 285 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~------- 285 (799)
..+..|++|+|.+.+++.+.+.+.. . ..+..+||+||+|+|||++|+++|+.+......
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~----~----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE----G----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 3567899999999988877776532 1 234569999999999999999999998743110
Q ss_pred -----------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 003743 286 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 350 (799)
Q Consensus 286 -----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~ 350 (799)
...++.++.+.- ... +.++.++..+. .....|+||||+|.+.. .
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~--~gV----d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~ 134 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASN--TGI----DNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------S 134 (709)
T ss_pred cHHHHHHhccCccceEEEecccc--CCH----HHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------H
Confidence 012233333221 111 23444444332 23456999999998851 3
Q ss_pred HHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH
Q 003743 351 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 430 (799)
Q Consensus 351 l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~ 430 (799)
.++.|+..++.... .+.+|++|+.+..+.+.+++ |+. .+.|..++.++...++...+...++.++++.
T Consensus 135 A~NALLKtLEEPp~---------~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eA 202 (709)
T PRK08691 135 AFNAMLKTLEEPPE---------HVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPA 202 (709)
T ss_pred HHHHHHHHHHhCCC---------CcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHH
Confidence 45567777765432 36778888888999999988 774 7899999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 431 LLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 431 l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
+..|++.+.| +.+++.++++.++.
T Consensus 203 L~~Ia~~A~G-slRdAlnLLDqaia 226 (709)
T PRK08691 203 LQLLGRAAAG-SMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 9999999865 78888888877664
No 159
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.53 E-value=2.1e-13 Score=141.08 Aligned_cols=168 Identities=20% Similarity=0.315 Sum_probs=115.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
.+++++|+||||||||++++++++.+.... .++++++|..+.... ..++... ....+|+|||+|.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIA 103 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhc
Confidence 467899999999999999999999876332 467788888765321 2223322 234699999999985
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccc---hhhhccCce--eEEEeccCCCH
Q 003743 334 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRF--DFHVQLPAPAA 408 (799)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld---~aL~r~gRf--~~~i~~~~p~~ 408 (799)
... .....|..+++...... ..++++++..+..++ +.|.+ |+ ..++.+++|+.
T Consensus 104 ~~~-------------~~~~~L~~~l~~~~~~~-------~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~ 161 (226)
T TIGR03420 104 GQP-------------EWQEALFHLYNRVREAG-------GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSD 161 (226)
T ss_pred CCh-------------HHHHHHHHHHHHHHHcC-------CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCH
Confidence 210 01223333343322211 134444443444332 77787 55 46899999999
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 409 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 409 ~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
+++..+++.++...++.++++.++.++.. .+.+.+++..+++.+...+
T Consensus 162 ~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 162 EEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999996 5558999999988766443
No 160
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.53 E-value=2.8e-13 Score=147.28 Aligned_cols=175 Identities=23% Similarity=0.324 Sum_probs=128.2
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhh-CCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh-hhhc-c
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQ-APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 586 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~-~~~g-~ 586 (799)
-++|++++++.+...+............ ..-.++.++||+||||||||++|+++|..++.+|+.+++..+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 4789999999997766532111111000 01124579999999999999999999999999999999988874 6888 4
Q ss_pred cHHHHHHHHHHh--------------------------------------------------------------------
Q 003743 587 SEQAVRDIFSKA-------------------------------------------------------------------- 598 (799)
Q Consensus 587 se~~i~~~f~~a-------------------------------------------------------------------- 598 (799)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 556666665554
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q 003743 599 -----------------------------------------------------------------------TAAAPCLLF 607 (799)
Q Consensus 599 -----------------------------------------------------------------------~~~~p~ILf 607 (799)
+..+..|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 011335999
Q ss_pred EcccccccCCCCCCCCch-hhHHHHHHHhhccCcc--------ccCcEEEEEecC----CCCccChhhcCCCCcceeeec
Q 003743 608 FDEFDSIAPKRGHDNTGV-TDRVVNQFLTELDGVE--------VLTGVFVFAATS----RPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 608 iDEid~l~~~r~~~~~~~-~~r~~~~ll~~ld~~~--------~~~~vlvi~ttn----~~~~ld~al~r~gRf~~~i~~ 674 (799)
|||||+++.+..+....+ ...++..||..|+|-. ..+++++||+.. .|+.|=|.|.- ||+.++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 999999997653222222 3458999999998732 356788888754 46667788875 99999999
Q ss_pred CCCCHHHHHHHH
Q 003743 675 DFPSPRERLDIL 686 (799)
Q Consensus 675 ~~p~~~~r~~Il 686 (799)
.+.+.+...+||
T Consensus 331 ~~L~~edL~rIL 342 (441)
T TIGR00390 331 QALTTDDFERIL 342 (441)
T ss_pred CCCCHHHHHHHh
Confidence 999999999998
No 161
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.53 E-value=4.8e-13 Score=148.82 Aligned_cols=228 Identities=18% Similarity=0.241 Sum_probs=144.5
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC---ceeeEEEEEec
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCC 294 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~---~~~~~~~~v~~ 294 (799)
.+.++|.+..++.|...+...+.. ..+.+++|+||||||||++++++++.+.... .....+++++|
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~-----------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG-----------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC-----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 457899999999999988766541 2345799999999999999999998875321 11256788898
Q ss_pred ccccccch-------------------h-hHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 003743 295 SRLSLEKG-------------------P-IIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 353 (799)
Q Consensus 295 s~l~~~~~-------------------~-~~~~~l~~~~~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~ 353 (799)
........ + ...+.+..++.... ...+.||+|||+|.+... .+ .++.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-~~-----------~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-DD-----------DLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-Cc-----------HHHH
Confidence 66432110 0 11122233333332 234678999999999621 00 2333
Q ss_pred HHHHHHHHhccccCCccCCCCEEEEEecCCCC---ccchhhhccCcee-EEEeccCCCHHHHHHHHHHHhhh--cccCCC
Q 003743 354 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECS 427 (799)
Q Consensus 354 ~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~---~ld~aL~r~gRf~-~~i~~~~p~~~er~~Il~~~l~~--~~~~~~ 427 (799)
.|..+.+.... ...++.+|+++|.++ .+++.+.+ ||. ..+.|++|+.+|+.+|++..+.. ....++
T Consensus 151 ~l~~~~~~~~~------~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~ 222 (365)
T TIGR02928 151 QLSRARSNGDL------DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD 222 (365)
T ss_pred hHhccccccCC------CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 33333111110 112588888888875 57788877 664 57999999999999999988762 233467
Q ss_pred HHHHHHHHhhc---CCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 428 DEILLDVASKC---DGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 428 ~~~l~~la~~~---~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
+++++.++..+ .| +.+....+|+.|...|..+ ....++.+++..++...
T Consensus 223 ~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 223 DGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKI 274 (365)
T ss_pred hhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 77777665544 34 4455556677777655433 12457777777666543
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=9.2e-14 Score=169.28 Aligned_cols=185 Identities=23% Similarity=0.354 Sum_probs=134.7
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEE
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 574 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i 574 (799)
+..++.++|.++..+.+.+.+.. +...+++|+||||||||++++++|..+ +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 35678899998877777665543 223589999999999999999999875 6788999
Q ss_pred eccchh--hhhhcccHHHHHHHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe
Q 003743 575 KGPELL--NKYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 575 ~~~~l~--~~~~g~se~~i~~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
+...+. .+|.|+.+..++.+|..+.. ..|+||||||+|.+.+.+..... ..+.+.|... ...+.+.+|++
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~----l~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPA----LARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchh----hhcCceEEEEe
Confidence 888775 46889999999999998865 46899999999999865432211 1233333322 23456888888
Q ss_pred cCCCC-----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCC-----cccHHHHHHHCCCCc
Q 003743 652 TSRPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD-----DVDLEAIAHMTEGFS 712 (799)
Q Consensus 652 tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----~~~~~~la~~~~g~s 712 (799)
|+..+ .+|+++.| ||. .|.++.|+.+++..|++.....+.... +..+...+..+.+|-
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 88764 37999999 996 578999999999999988766654332 223444455554443
No 163
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4e-13 Score=153.30 Aligned_cols=194 Identities=19% Similarity=0.254 Sum_probs=136.6
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc--------
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------- 284 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~-------- 284 (799)
..+..|++|+|.+.+++.+.+.+.. . ..+..+|||||||||||++|+++|+.+.....
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~----~----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ----G----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3567899999999887777665432 1 12344799999999999999999999863210
Q ss_pred ---------eeeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 285 ---------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 285 ---------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
....+..++.+. ..... .++++...+. ...+.|++|||+|.+.. ..
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~--~~~vd----~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~---------------~a 132 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS--NNSVE----DVRDLREKVLLAPLRGGRKVYILDEAHMMSK---------------SA 132 (504)
T ss_pred hhhHHHhcCCCCceEEecccc--cCCHH----HHHHHHHHHhhccccCCCeEEEEECccccCH---------------HH
Confidence 112244555432 11122 2333333222 23566999999998741 34
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
++.|+..++.... .+++|.+++.+..+.+.+.+ |+. ++.|.+++.++....++..+...++.++++.+
T Consensus 133 ~naLLk~LEep~~---------~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al 200 (504)
T PRK14963 133 FNALLKTLEEPPE---------HVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEAL 200 (504)
T ss_pred HHHHHHHHHhCCC---------CEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5556666655322 36777778888999999998 765 79999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
..++..+.| +.+++.++++.++
T Consensus 201 ~~ia~~s~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 201 QLVARLADG-AMRDAESLLERLL 222 (504)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999876 5666666666543
No 164
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.8e-13 Score=149.95 Aligned_cols=193 Identities=17% Similarity=0.258 Sum_probs=134.1
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.|..|++++|.+.+++.+.+.+.. . ..+..+||+||||+|||++|+++|+.+......
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~----~----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL----G----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc----C----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 467899999999888776654421 1 124458999999999999999999998632100
Q ss_pred ----------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 286 ----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 286 ----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
...+..++.+.- .. .+.++.+...+. .....|++|||+|.+.. ..
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~--~~----v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a 135 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASR--TK----VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HS 135 (363)
T ss_pred HHHHHHhcCCCCceEEeccccc--CC----HHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HH
Confidence 011222322210 11 122444444432 12345999999999851 23
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
.+.|+..++.... .+.+|.+|+.++.+.+++++ |+. .++|++++.++..+++...++..+..++++.+
T Consensus 136 ~naLLk~lEe~~~---------~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al 203 (363)
T PRK14961 136 FNALLKTLEEPPQ---------HIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYAL 203 (363)
T ss_pred HHHHHHHHhcCCC---------CeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4456666665332 36677777888889999998 774 79999999999999999999998999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.++..+.| +++++.++++.++
T Consensus 204 ~~ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 204 KLIAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 999998876 6777777776654
No 165
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.52 E-value=3e-13 Score=152.05 Aligned_cols=221 Identities=19% Similarity=0.214 Sum_probs=141.3
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhh--
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLN-- 581 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~-- 581 (799)
+.+.|-++..+.|...+..... + ..+.+++++||||||||++++.+++.+ +..++.++|....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4567777777777776643211 1 223479999999999999999999876 57899999865322
Q ss_pred --------hhhc-------cc-HHHHHHHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccC
Q 003743 582 --------KYIG-------AS-EQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLT 644 (799)
Q Consensus 582 --------~~~g-------~s-e~~i~~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~ 644 (799)
...+ .+ ...+..+.+... ...+.||+|||+|.+.... ....+..|+..++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC-CC
Confidence 1111 11 222333333333 2456899999999997221 2345666766665433 23
Q ss_pred cEEEEEecCCCC---ccChhhcCCCCcc-eeeecCCCCHHHHHHHHHHHHccCC---CCCcccHHHHHHHCCCCcHHHHH
Q 003743 645 GVFVFAATSRPD---LLDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLP---LADDVDLEAIAHMTEGFSGADLQ 717 (799)
Q Consensus 645 ~vlvi~ttn~~~---~ld~al~r~gRf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~la~~~~g~sg~di~ 717 (799)
++.+|+++|.++ .+++.+.+ ||. ..++|++|+.++..+|++.+++... ...+..++.+++.+.+. .+|++
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~-~Gd~r 249 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTARE-HGDAR 249 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHh-cCcHH
Confidence 677888888764 37788777 563 6789999999999999998875431 11223356666666432 23454
Q ss_pred ---HHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC
Q 003743 718 ---ALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 718 ---~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~ 760 (799)
++|..|+..|..+ +...|+.+|+..|+..+.+
T Consensus 250 ~a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 250 VAIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHHHH
Confidence 4555555444322 2357999999999887643
No 166
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.6e-13 Score=153.03 Aligned_cols=205 Identities=22% Similarity=0.252 Sum_probs=138.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|++.+++.|...+... +.+..+||+||||||||++|+++|+.+..
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 45578999999999999988877631 12235899999999999999999997753
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
.++.+++..- .| -..++++++.+. .+...|+||||+|.+ .....+.|+
T Consensus 78 sC~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHHHHH
Confidence 3344433211 11 234555555443 234569999999998 345788999
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+ +..+.+.+|.+|+.+..+.+++++ |+ ..++|.+++.++....++..+...++. .+..+..|+..+.| +.
T Consensus 141 K~LE--epp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLE--EPPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHh--cCCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9997 344556566666678888888888 55 778999999999999998888776543 33345666666652 33
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 714 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 714 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
+++.+++..+... . + ..|+.+++++++..
T Consensus 215 R~alnlLek~i~~------~--------~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 215 RDALSLLDQAISF------C--------G-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHHHHHHh------c--------c-CCCCHHHHHHHHcc
Confidence 4443433332211 0 0 24888888777653
No 167
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.52 E-value=3.5e-13 Score=151.83 Aligned_cols=188 Identities=18% Similarity=0.232 Sum_probs=127.1
Q ss_pred CCCCccccccCchhHHHH---HHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEE
Q 003743 213 GFDSNVSSLSWMGTTASD---VINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI 289 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~---i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~ 289 (799)
..+.++++++|.+..+.. +.+.+ .. ....+++|+||||||||++|+++|+.++ ..+
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i----~~-----------~~~~~ilL~GppGtGKTtLA~~ia~~~~------~~~ 64 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMI----EA-----------GRLSSMILWGPPGTGKTTLARIIAGATD------APF 64 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHH----Hc-----------CCCceEEEECCCCCCHHHHHHHHHHHhC------CCE
Confidence 346778999998877554 33333 21 1234799999999999999999999987 566
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 003743 290 VFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 369 (799)
Q Consensus 290 ~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~ 369 (799)
+.+++.... .......+.............||||||+|.+.. ...+.|+..++..
T Consensus 65 ~~l~a~~~~---~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~---------------~~q~~LL~~le~~------- 119 (413)
T PRK13342 65 EALSAVTSG---VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK---------------AQQDALLPHVEDG------- 119 (413)
T ss_pred EEEeccccc---HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---------------HHHHHHHHHhhcC-------
Confidence 777765421 122222222222222223567999999999852 2334455554431
Q ss_pred cCCCCEEEEEecC--CCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhc--cc-CCCHHHHHHHHhhcCCCChh
Q 003743 370 CGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR--SL-ECSDEILLDVASKCDGYDAY 444 (799)
Q Consensus 370 ~~~~~v~vI~ttn--~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~--~~-~~~~~~l~~la~~~~g~s~~ 444 (799)
.+++|++|+ ....+++++++ |+ ..+.|++++.++...+++..+... ++ .+++++++.+++.+.| +++
T Consensus 120 ----~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R 191 (413)
T PRK13342 120 ----TITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DAR 191 (413)
T ss_pred ----cEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHH
Confidence 256666543 34578999999 87 488999999999999999887642 44 7889999999998855 566
Q ss_pred hHHHHHHHHH
Q 003743 445 DLEILVDRTV 454 (799)
Q Consensus 445 dl~~lv~~A~ 454 (799)
.+.++++.++
T Consensus 192 ~aln~Le~~~ 201 (413)
T PRK13342 192 RALNLLELAA 201 (413)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 168
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.51 E-value=1.2e-13 Score=167.95 Aligned_cols=185 Identities=25% Similarity=0.337 Sum_probs=137.3
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..++.+.|.++..+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4578899999988888887653 234589999999999999999999876 47899999
Q ss_pred ccchh--hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecC
Q 003743 576 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 576 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
+..+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.++... . ..+.+-|...| ..+.+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~--~~~a~lLkp~l----~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-A--IDAANILKPAL----ARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-c--ccHHHHhHHHH----hCCCcEEEEeCC
Confidence 98887 478899999999999999888899999999999987653221 1 12233333223 245577888888
Q ss_pred CCC-----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc----CCCC-CcccHHHHHHHCCCCcH
Q 003743 654 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK----LPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 654 ~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~-~~~~~~~la~~~~g~sg 713 (799)
..+ ..|+++.+ ||. .|.++.|+.++...|++..... ..+. .+..+..++..+.+|.+
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 764 37899999 996 4788999999999998764332 2221 33336666666666553
No 169
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=3.1e-13 Score=152.21 Aligned_cols=188 Identities=22% Similarity=0.288 Sum_probs=124.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHH-HHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~-~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
..++||||||||||++++++++++ +..++++++.++...+...... .+..+.+..+ .+.+|+|||++.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 468999999999999999999876 5789999998876655432211 1222222222 3569999999998653
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHcc
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
. .....|+..++.+...+..+|++++..|.. +++.+.+ ||. ..+.|++|+.++|..|++..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 223344444443333445566666666655 5688888 886 47899999999999999998876
Q ss_pred CCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 693 LPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 693 ~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
.++. ++..++.|+.... -+.+++..+++.....|... ...||.+.+++++..
T Consensus 284 ~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~------------~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLT------------GKPITLELAKEALKD 336 (405)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHH
Confidence 6543 3334677777766 35667666666544333211 134777777777654
No 170
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3e-13 Score=156.45 Aligned_cols=184 Identities=18% Similarity=0.245 Sum_probs=131.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 345678999999999999998877642 12235799999999999999999998754
Q ss_pred -----------------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhH
Q 003743 570 -----------------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDR 628 (799)
Q Consensus 570 -----------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r 628 (799)
.++.+++.. ...-..++++.+.+.. +...|++|||+|.|. ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~ 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NT 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HH
Confidence 233333321 1123457777766532 335699999999983 45
Q ss_pred HHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHH
Q 003743 629 VVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHM 707 (799)
Q Consensus 629 ~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~ 707 (799)
..+.|++.|+ +....+.+|.+|+.+..+.+.+++ |+ ..+.|.+++.++..+.++.++...++. ++..+..|+..
T Consensus 140 a~NaLLKtLE--EPP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLE--EPPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcc--cCCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6888999887 344566666677788888888988 55 678999999999999999888776654 33346777777
Q ss_pred CCCCcHHHHHHHH
Q 003743 708 TEGFSGADLQALL 720 (799)
Q Consensus 708 ~~g~sg~di~~~~ 720 (799)
+.| +.+++.+++
T Consensus 215 s~G-slR~al~lL 226 (618)
T PRK14951 215 ARG-SMRDALSLT 226 (618)
T ss_pred cCC-CHHHHHHHH
Confidence 764 444444443
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.51 E-value=1.2e-12 Score=132.56 Aligned_cols=196 Identities=22% Similarity=0.294 Sum_probs=139.8
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+..+++++|.+.+++.+++....|+.. . +..++||||++|||||++++++..++...+ ..++.|.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G----------~-pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~ 87 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQG----------L-PANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVS 87 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcC----------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEEC
Confidence 3667899999999999999999988862 3 577899999999999999999999988655 4466665
Q ss_pred cccccccchhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
..++.. +..++..+. .+.+-|||+||+. +- .++ .-...|..++|+.-... +
T Consensus 88 k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe------~~d-------~~yk~LKs~LeGgle~~-----P 139 (249)
T PF05673_consen 88 KEDLGD---------LPELLDLLRDRPYKFILFCDDLS-FE------EGD-------TEYKALKSVLEGGLEAR-----P 139 (249)
T ss_pred HHHhcc---------HHHHHHHHhcCCCCEEEEecCCC-CC------CCc-------HHHHHHHHHhcCccccC-----C
Confidence 555332 333344433 2456799999972 21 111 33566777777754322 3
Q ss_pred CCEEEEEecCCCCccchhhhc---------------------cCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 373 GPIAFVASAQSLEKIPQSLTS---------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 373 ~~v~vI~ttn~~~~ld~aL~r---------------------~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
.+|++.+|+|+-..+++.+.. .-||...|.|.+|+.++..+|++.++...++.++++.+
T Consensus 140 ~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l 219 (249)
T PF05673_consen 140 DNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEEL 219 (249)
T ss_pred CcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 479999999984433222111 12999999999999999999999999999999986543
Q ss_pred H----HHHhhcCCCChhhHHHHHH
Q 003743 432 L----DVASKCDGYDAYDLEILVD 451 (799)
Q Consensus 432 ~----~la~~~~g~s~~dl~~lv~ 451 (799)
. .++....|.||+--.+.++
T Consensus 220 ~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 220 RQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3 3444456778876555554
No 172
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.1e-13 Score=154.81 Aligned_cols=199 Identities=17% Similarity=0.188 Sum_probs=139.6
Q ss_pred CCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc-------
Q 003743 212 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------- 284 (799)
Q Consensus 212 ~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------- 284 (799)
...+.+|++|+|.+.+++.+.+.+.. . ..+..+||+||+|||||++|+++|+.+.....
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~----~----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA----G----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 34577899999998887776665431 1 12334899999999999999999999873210
Q ss_pred -------------eeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 285 -------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 285 -------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
....++.++.+... ....++..+..+..........|++|||+|.+.. ..
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A 134 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AG 134 (584)
T ss_pred ccHHHHHhhcccCCCceEEEecccccc--CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HH
Confidence 11234444443211 1223333222222222223456999999999962 34
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
++.|+..++.... .+++|++|+.++.+.+++++ |. .++.|..++.++..+.+...+...++.++++.+
T Consensus 135 ~NALLK~LEEpp~---------~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al 202 (584)
T PRK14952 135 FNALLKIVEEPPE---------HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVY 202 (584)
T ss_pred HHHHHHHHhcCCC---------CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5667777776433 37777777888999999999 75 489999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
..++..+.| +.++..++++..+
T Consensus 203 ~~Ia~~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 203 PLVIRAGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 999887765 6777777777654
No 173
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.51 E-value=5.4e-13 Score=147.83 Aligned_cols=183 Identities=25% Similarity=0.315 Sum_probs=128.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|.+.+++.+...+... +.+..+||+||||+|||++|+++|+.+..
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45578999999999999998877531 22346899999999999999999988642
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
.++.+++.. ......++++++.+.. +.+.|++|||+|.+. ....+.|+
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHH
Confidence 234444321 1233456777776543 234699999999883 34677888
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.++. ....+++|.+|+.++.+.+++++ |+ ..+.|++|+.++..++++.+++..++. ++..+..|+..+.| +.
T Consensus 139 ~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 88864 33456666677888888899998 76 478999999999999999988876643 23345556666653 33
Q ss_pred HHHHHHH
Q 003743 714 ADLQALL 720 (799)
Q Consensus 714 ~di~~~~ 720 (799)
+.+.+.+
T Consensus 213 ~~a~~~l 219 (355)
T TIGR02397 213 RDALSLL 219 (355)
T ss_pred HHHHHHH
Confidence 4443333
No 174
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=9.6e-13 Score=151.79 Aligned_cols=185 Identities=17% Similarity=0.240 Sum_probs=130.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 45678999999999999999887631 12224799999999999999999987753
Q ss_pred -------------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHH
Q 003743 570 -------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 632 (799)
Q Consensus 570 -------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ 632 (799)
.++.++++.. ..-..++++.+.+. .....|++|||+|.|. ....+.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NA 137 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNA 137 (584)
T ss_pred HHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHH
Confidence 2333433221 11234555544442 2345699999999983 457889
Q ss_pred HHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCC
Q 003743 633 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGF 711 (799)
Q Consensus 633 ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 711 (799)
|++.|+ +....+++|.+|+.++.+.+++++ |. ..+.|.+++.++..+.++.+++..++. ++..+..++..+. -
T Consensus 138 LLK~LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-G 211 (584)
T PRK14952 138 LLKIVE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-G 211 (584)
T ss_pred HHHHHh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 999997 445567777778888999999998 63 678999999999999999888876643 3333555666555 3
Q ss_pred cHHHHHHHHHH
Q 003743 712 SGADLQALLSD 722 (799)
Q Consensus 712 sg~di~~~~~~ 722 (799)
+.+++.+++..
T Consensus 212 dlR~aln~Ldq 222 (584)
T PRK14952 212 SPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHH
Confidence 44554444443
No 175
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.51 E-value=2e-13 Score=160.81 Aligned_cols=137 Identities=22% Similarity=0.294 Sum_probs=87.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch------hhhhh-cccHHH---HHHHHHHhHhcCCeEEEEcc
Q 003743 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL------LNKYI-GASEQA---VRDIFSKATAAAPCLLFFDE 610 (799)
Q Consensus 541 ~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l------~~~~~-g~se~~---i~~~f~~a~~~~p~ILfiDE 610 (799)
+..+++||.|.||+|||++..|+|+..|-.+++||.++- ++.+. ++-... ...-|-.|.+.+ ..+++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeeh
Confidence 345689999999999999999999999999999998763 22221 110000 112233333322 3888999
Q ss_pred cccccCCCCCCCCchhhHHHHHHHhhccCc------------cccCcEEEEEecCCCCc------cChhhcCCCCcceee
Q 003743 611 FDSIAPKRGHDNTGVTDRVVNQFLTELDGV------------EVLTGVFVFAATSRPDL------LDAALLRPGRLDRLL 672 (799)
Q Consensus 611 id~l~~~r~~~~~~~~~r~~~~ll~~ld~~------------~~~~~vlvi~ttn~~~~------ld~al~r~gRf~~~i 672 (799)
+.-. ...++..|-..||.- ....++.|+||-|.-+. ++..+.. ||. ++
T Consensus 1620 iNLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1620 INLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 9654 233444444444431 12345778877775433 8888988 885 56
Q ss_pred ecCCCCHHHHHHHHHHHHcc
Q 003743 673 FCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 673 ~~~~p~~~~r~~Il~~~~~~ 692 (799)
++.-++.+....|.+.+...
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EecccccchHHHHHHhhCCc
Confidence 77777777777777665543
No 176
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.50 E-value=8.6e-13 Score=146.77 Aligned_cols=239 Identities=17% Similarity=0.140 Sum_probs=144.7
Q ss_pred CCccc-cccCchhHHHHHHHHHHhhcCCCcchhhh-hcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEE
Q 003743 215 DSNVS-SLSWMGTTASDVINRIKVLLSPDSGLWFS-TYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 292 (799)
Q Consensus 215 ~~~~~-~l~g~~~~~~~i~~~l~~~l~~~~~~~~~-~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v 292 (799)
...++ .|+|.+.+++.+...+..-+......... ........++||+||||||||++|+++|+.++ .+++.+
T Consensus 66 ~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~i 139 (412)
T PRK05342 66 KAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------VPFAIA 139 (412)
T ss_pred HHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------CCceec
Confidence 33443 37899988887754442111100000000 00112457899999999999999999999998 788888
Q ss_pred ecccccc-cchhh-HHHHHHHHHHH----HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---
Q 003743 293 CCSRLSL-EKGPI-IRQALSNFISE----ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--- 363 (799)
Q Consensus 293 ~~s~l~~-~~~~~-~~~~l~~~~~~----a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~--- 363 (799)
+++.+.. .+.|. ....+..++.. .....++||||||||.+...+.... .........+.+.|+.+|++..
T Consensus 140 d~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~-~~~d~s~~~vQ~~LL~~Leg~~~~v 218 (412)
T PRK05342 140 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGTVASV 218 (412)
T ss_pred chhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC-cCCCcccHHHHHHHHHHHhcCeEEe
Confidence 8877653 22222 23333333332 2235678999999999985422111 1111112257788888888532
Q ss_pred -cccCCccCCCCEEEEEecCCCC----------------------------------------------------ccchh
Q 003743 364 -EKRKSSCGIGPIAFVASAQSLE----------------------------------------------------KIPQS 390 (799)
Q Consensus 364 -~~~~~~~~~~~v~vI~ttn~~~----------------------------------------------------~ld~a 390 (799)
..........+.++|.|+|... -+.|+
T Consensus 219 ~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PE 298 (412)
T PRK05342 219 PPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPE 298 (412)
T ss_pred CCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHH
Confidence 1111111222345555544400 01233
Q ss_pred hhccCceeEEEeccCCCHHHHHHHHHH----Hh-------hh--cccCCCHHHHHHHHhhc--CCCChhhHHHHHHHHHH
Q 003743 391 LTSSGRFDFHVQLPAPAASERKAILEH----EI-------QR--RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVH 455 (799)
Q Consensus 391 L~r~gRf~~~i~~~~p~~~er~~Il~~----~l-------~~--~~~~~~~~~l~~la~~~--~g~s~~dl~~lv~~A~~ 455 (799)
|+ ||++..+.|.+++.+++.+|+.. .+ .. ..+.++++++++|++.+ ..+-.+.|+.++++.+.
T Consensus 299 fl--gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~ 376 (412)
T PRK05342 299 FI--GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILL 376 (412)
T ss_pred Hh--CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhH
Confidence 43 49999999999999999999972 22 22 23568999999999874 45667889999988887
Q ss_pred HHhcccc
Q 003743 456 AAVGRYL 462 (799)
Q Consensus 456 ~a~~r~~ 462 (799)
..+.+..
T Consensus 377 ~~~~~~p 383 (412)
T PRK05342 377 DVMFELP 383 (412)
T ss_pred HHHHhcc
Confidence 7766543
No 177
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=4.8e-13 Score=150.65 Aligned_cols=177 Identities=20% Similarity=0.339 Sum_probs=119.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHHHHHHHHhcCCcEEEEccccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
..+++||||||+|||+|++++++++..... ...++++++.++.......... .+..+.... ....+|+|||+|.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNP-NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLA 212 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhc
Confidence 346999999999999999999999863311 1456778877654322211111 111222222 246799999999986
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCcee--EEEeccCCCH
Q 003743 334 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAA 408 (799)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf~--~~i~~~~p~~ 408 (799)
+.. .....+...++...... ..++|++...|.. +++.+++ ||. ..+.|++|+.
T Consensus 213 ~~~-------------~~~~~l~~~~n~~~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 213 GKE-------------RTQEEFFHTFNALHENG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDL 270 (405)
T ss_pred CCH-------------HHHHHHHHHHHHHHHCC-------CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCH
Confidence 311 11222333333332221 2455555555544 5688888 774 5799999999
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 409 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 409 ~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
++|.+|++..+...++.++++++++++....+ +.++|..++.+....+
T Consensus 271 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 271 ETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765 6788888877765444
No 178
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=3.9e-13 Score=151.91 Aligned_cols=276 Identities=13% Similarity=0.171 Sum_probs=162.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHH-HHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR-QALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~-~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
.+++||||||+|||+|++++++++..... ...++++++.++......... ..+.. |.......+.+|+|||++.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 45999999999999999999998753221 146778888765433222211 11112 2222223578999999998862
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCceeEEEeccCCCHHHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFHVQLPAPAASER 411 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf~~~i~~~~p~~~er 411 (799)
. ......++..+....+ .. ..++|++.+.|.. +.+.+.++......+.+.+|+.++|
T Consensus 209 ~---------~~~q~elf~~~n~l~~----~~-------k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 209 K---------TGVQTELFHTFNELHD----SG-------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred c---------HHHHHHHHHHHHHHHH----cC-------CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 1 1111234443333322 11 2455555556554 4577888333356789999999999
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 412 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 412 ~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
.+|++..+...++.++++++++++....+ +.++|..++.+....+... ...++.+....++..+...
T Consensus 269 ~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~------------~~~it~~~a~~~L~~~~~~ 335 (440)
T PRK14088 269 KKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT------------GEEVDLKEAILLLKDFIKP 335 (440)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999998876 6778877777654333211 1234444444444332110
Q ss_pred ccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeE
Q 003743 492 AMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF 571 (799)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~ 571 (799)
. .-......+.+++.+.+..... . -=|.|++-+.+-..+|.+|-.+-...
T Consensus 336 ~--------------~~~~~i~~~~I~~~V~~~~~i~--~--------------~~l~s~~R~~~i~~aR~iamyl~r~~ 385 (440)
T PRK14088 336 N--------------RVKAMDPIDELIEIVAKVTGVS--R--------------EEILSNSRNVKALLARRIGMYVAKNY 385 (440)
T ss_pred c--------------cccCCCCHHHHHHHHHHHcCCc--H--------------HHHhCCCCCccccHHHHHHHHHHHHH
Confidence 0 0001234566666666554321 1 12345666677788888887664444
Q ss_pred EEEeccchhhhhhcccHHHHHHHHHH
Q 003743 572 ISVKGPELLNKYIGASEQAVRDIFSK 597 (799)
Q Consensus 572 i~i~~~~l~~~~~g~se~~i~~~f~~ 597 (799)
...+.+++-. .+|.+...+-...++
T Consensus 386 ~~~s~~~Ig~-~fgr~hstV~~a~~~ 410 (440)
T PRK14088 386 LGSSLRTIAE-KFNRSHPVVVDSVKK 410 (440)
T ss_pred hCCCHHHHHH-HhCCCHHHHHHHHHH
Confidence 4444444433 335444444444333
No 179
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3e-13 Score=156.43 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=137.1
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc--------
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------- 284 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~-------- 284 (799)
..+.+|++++|.+.+++.+.+.+.. . ..+..+||+||+|||||++|+++|+.++....
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~----~----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ----Q----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 3467899999988777766654421 1 12345899999999999999999999874210
Q ss_pred ---------------eeeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCc
Q 003743 285 ---------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPS 345 (799)
Q Consensus 285 ---------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~ 345 (799)
....++.++.+.- ... +.+++++..+.. ....|++|||+|.+..
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~--~~V----d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------- 138 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASN--RGV----DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------- 138 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccc--cCH----HHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------
Confidence 0012333333221 111 224444444321 2345999999999962
Q ss_pred hhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccC
Q 003743 346 TSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE 425 (799)
Q Consensus 346 ~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~ 425 (799)
..++.|+..++.... .+.+|++|+.+..+.+.+++ |+. .+.|..++.++..+.++..+...++.
T Consensus 139 ----~a~NaLLKtLEEPP~---------~~~fIL~Ttd~~kil~TIlS--Rc~-~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 139 ----TAFNAMLKTLEEPPE---------YLKFVLATTDPQKVPVTVLS--RCL-QFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred ----HHHHHHHHhcccCCC---------CeEEEEEECCchhhhHHHHH--hce-eeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 335566666665332 36777777888888888998 764 89999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 426 CSDEILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 426 ~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
++++.+..|++.+.| +.+++.+++++++.
T Consensus 203 ie~~AL~~La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 203 AEPQALRLLARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999999999998887 77777777766553
No 180
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.3e-13 Score=160.25 Aligned_cols=200 Identities=16% Similarity=0.160 Sum_probs=140.8
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc------
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------ 284 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------ 284 (799)
.+..+.+|++|+|.+.+++.|.+.+.. . ..+..|||+||+|||||++|+.+|+.|.....
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~----~----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS----G----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh----C----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 445678899999998887776665431 1 12334899999999999999999999973210
Q ss_pred --------------eeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 003743 285 --------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 350 (799)
Q Consensus 285 --------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~ 350 (799)
....++.++.... .....++.....++.........|+||||+|.|.. .
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------Q 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------H
Confidence 0122334433221 11223333222222222234556999999999962 4
Q ss_pred HHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH
Q 003743 351 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 430 (799)
Q Consensus 351 l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~ 430 (799)
.++.|+..++.... .++||++|+.++.|.+.+++ |+. ++.|..++.++..+++...+...++.++++.
T Consensus 136 a~NaLLK~LEEpP~---------~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~ea 203 (824)
T PRK07764 136 GFNALLKIVEEPPE---------HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGV 203 (824)
T ss_pred HHHHHHHHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 56677777776543 36777777888889999999 765 8899999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHH
Q 003743 431 LLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 431 l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+..++..+.| +.+++.+++++.+
T Consensus 204 l~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 204 LPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999988876 6777777776654
No 181
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=1.2e-12 Score=152.34 Aligned_cols=191 Identities=20% Similarity=0.283 Sum_probs=132.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEE---Eecc-
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS---VKGP- 577 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~---i~~~- 577 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+.+.--. -.|.
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 345678999999999999998887632 123357999999999999999999987542100 0000
Q ss_pred ---------chh--hhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc
Q 003743 578 ---------ELL--NKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV 642 (799)
Q Consensus 578 ---------~l~--~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~ 642 (799)
+++ ..........++++.+.+.. +.+.|++|||+|.|. ....+.|++.|+ ++
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLE--EP 145 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLE--EP 145 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhh--cC
Confidence 000 00000124557777776643 445799999999983 347889999998 44
Q ss_pred cCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 003743 643 LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLS 721 (799)
Q Consensus 643 ~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~ 721 (799)
...+++|.+|+.++.+.+.+++ |+ ..+.|.+|+.++...+++..+...++. .+..+..++..+.| +.+++..++.
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLe 221 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAE 221 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5567777788889999999998 66 478999999999999999887766554 23336667777763 3444444443
No 182
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.50 E-value=6.7e-13 Score=137.98 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=112.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
.++++||||||||||+|++++++.+.... ..+.+++....... ..+++.... ...+|+|||++.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~ 111 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRAWF--------VPEVLEGME--QLSLVCIDNIECIAG 111 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhcC
Confidence 35799999999999999999999876432 34455555442211 112222221 235899999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCce--eEEEeccCCCHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAAS 409 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf--~~~i~~~~p~~~ 409 (799)
. ......++..+....+. +. ..+++++++.|.. +.|.|++ |+ ..++.+.+|+.+
T Consensus 112 ~---------~~~~~~lf~l~n~~~e~----g~------~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~ 170 (235)
T PRK08084 112 D---------ELWEMAIFDLYNRILES----GR------TRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDE 170 (235)
T ss_pred C---------HHHHHHHHHHHHHHHHc----CC------CeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHH
Confidence 1 11122444554444331 10 1355555566655 5799999 66 368999999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 410 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 410 er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
++.+++++.+..+++.+++++++++++.+.+ +.+.+..++....
T Consensus 171 ~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 171 EKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 9999999988888999999999999999887 6677777776643
No 183
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=3e-13 Score=159.80 Aligned_cols=193 Identities=17% Similarity=0.257 Sum_probs=128.0
Q ss_pred CCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEE
Q 003743 212 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF 291 (799)
Q Consensus 212 ~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~ 291 (799)
...+.++++++|.+..+.. ...+...+.. ....+++||||||||||++|+++|+.++ .+++.
T Consensus 21 k~RP~tldd~vGQe~ii~~-~~~L~~~i~~-----------~~~~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~ 82 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGE-GRLLRRAIKA-----------DRVGSLILYGPPGVGKTTLARIIANHTR------AHFSS 82 (725)
T ss_pred hcCCCcHHHhcCcHHHhhh-hHHHHHHHhc-----------CCCceEEEECCCCCCHHHHHHHHHHHhc------Cccee
Confidence 3346789999998877643 1122222221 1234799999999999999999999887 56667
Q ss_pred EecccccccchhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 003743 292 VCCSRLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 370 (799)
Q Consensus 292 v~~s~l~~~~~~~~~~~l~~~~~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~ 370 (799)
+++..... ......+........ .....+|||||+|.+.. .....|+..++.
T Consensus 83 lna~~~~i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------------~qQdaLL~~lE~--------- 135 (725)
T PRK13341 83 LNAVLAGV---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------------AQQDALLPWVEN--------- 135 (725)
T ss_pred ehhhhhhh---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH---------------HHHHHHHHHhcC---------
Confidence 77653211 112222222111111 13456999999999852 223344444432
Q ss_pred CCCCEEEEEecCC--CCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhh-------hcccCCCHHHHHHHHhhcCCC
Q 003743 371 GIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-------RRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 371 ~~~~v~vI~ttn~--~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~-------~~~~~~~~~~l~~la~~~~g~ 441 (799)
+.+++|++|+. ...+++++++ |.. .+.|++++.+++..+++.++. ..++.+++++++.++..+.|
T Consensus 136 --g~IiLI~aTTenp~~~l~~aL~S--R~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G- 209 (725)
T PRK13341 136 --GTITLIGATTENPYFEVNKALVS--RSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG- 209 (725)
T ss_pred --ceEEEEEecCCChHhhhhhHhhc--ccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-
Confidence 13666665533 3568899998 643 689999999999999999887 45678999999999998855
Q ss_pred ChhhHHHHHHHHHH
Q 003743 442 DAYDLEILVDRTVH 455 (799)
Q Consensus 442 s~~dl~~lv~~A~~ 455 (799)
+.+.+.++++.++.
T Consensus 210 D~R~lln~Le~a~~ 223 (725)
T PRK13341 210 DARSLLNALELAVE 223 (725)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777776653
No 184
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.50 E-value=4.1e-13 Score=146.10 Aligned_cols=175 Identities=23% Similarity=0.340 Sum_probs=128.6
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCC-CCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh-hhhcc-
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGA- 586 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~-~~~g~- 586 (799)
.++|++++++.+...+........+..... -..+.++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 478999999999877753211111110100 112478999999999999999999999999999999998875 68884
Q ss_pred cHHHHHHHHHHhH-------------------------------------------------------------------
Q 003743 587 SEQAVRDIFSKAT------------------------------------------------------------------- 599 (799)
Q Consensus 587 se~~i~~~f~~a~------------------------------------------------------------------- 599 (799)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3556666666551
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 003743 600 -----------------------------------------------------------------------AAAPCLLFF 608 (799)
Q Consensus 600 -----------------------------------------------------------------------~~~p~ILfi 608 (799)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012359999
Q ss_pred cccccccCCCCCCCCch-hhHHHHHHHhhccCcc--------ccCcEEEEEecC----CCCccChhhcCCCCcceeeecC
Q 003743 609 DEFDSIAPKRGHDNTGV-TDRVVNQFLTELDGVE--------VLTGVFVFAATS----RPDLLDAALLRPGRLDRLLFCD 675 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~-~~r~~~~ll~~ld~~~--------~~~~vlvi~ttn----~~~~ld~al~r~gRf~~~i~~~ 675 (799)
||||+++.+.+.....+ ...++..||..|+|-. ..+++++||+.. .|+.|-|.|.- ||+.++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 99999997653322222 3458999999998732 356788888653 46667788886 999999999
Q ss_pred CCCHHHHHHHH
Q 003743 676 FPSPRERLDIL 686 (799)
Q Consensus 676 ~p~~~~r~~Il 686 (799)
+.+.+...+||
T Consensus 334 ~L~~~dL~~IL 344 (443)
T PRK05201 334 ALTEEDFVRIL 344 (443)
T ss_pred CCCHHHHHHHh
Confidence 99999999999
No 185
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.50 E-value=1.4e-13 Score=156.88 Aligned_cols=189 Identities=21% Similarity=0.279 Sum_probs=123.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHH-HHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~-~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
.+++||||||||||++++++++++ +..++++++.++...+...... ....+.+..+ .+.+|+|||++.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 469999999999999999999887 5679999998887665443221 1222222222 4679999999998654
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHcc
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
. .....|+..++.+...+..+||+++..|.. +++.+.+ ||. ..+.+++|+.++|.+|++..+..
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 2 223344444443333444566666666655 6788888 885 57899999999999999998876
Q ss_pred CCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 693 LPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 693 ~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
.++. ++..++.|+....| +.+++..+++.....+... ...||.+.+++++...
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------GKPITLELAKEALKDL 349 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHh
Confidence 5432 22235666666552 4455555554433222111 1347888888887754
No 186
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.49 E-value=2.9e-13 Score=147.54 Aligned_cols=160 Identities=15% Similarity=0.225 Sum_probs=111.7
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 500 SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 500 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
..++.+..++++.|.+++++.+...+... ..+..+||+||||+|||++|+++++..+.+++.+++++
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 34556688999999999999998877521 12234566999999999999999999999999999876
Q ss_pred hhhhhcccHHHHHHHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 580 LNKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 580 ~~~~~g~se~~i~~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
.. +......+........ ...+.||+|||+|.+.. ......|...|+.. ...+.+|.+||.++.+
T Consensus 79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANNKNGI 144 (316)
T ss_pred -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCChhhc
Confidence 21 1111122222221111 13568999999998732 12334444445532 3456677789999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHH
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVI 689 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~ 689 (799)
++++++ |+. .+.|+.|+.+++..|++..
T Consensus 145 ~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 145 IEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 999999 774 6799999999998887654
No 187
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.1e-12 Score=147.49 Aligned_cols=228 Identities=19% Similarity=0.218 Sum_probs=146.3
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
..+.+++.++.++.+...+...+.. ..+.+++||||||||||++++.+++.+.... ....+++++|..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~-----------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~ 95 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG-----------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQI 95 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC-----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCc
Confidence 4467889999999888887665532 2345699999999999999999999885432 125678888865
Q ss_pred ccccc-----------------hh-hHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 003743 297 LSLEK-----------------GP-IIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 357 (799)
Q Consensus 297 l~~~~-----------------~~-~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~ 357 (799)
..... .+ .....+..+...... ..+.||+|||+|.+.. +.. . ..+..|.+
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~-~~~---~-------~~l~~l~~ 164 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE-KEG---N-------DVLYSLLR 164 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc-cCC---c-------hHHHHHHH
Confidence 43210 00 112222333333322 3457999999999961 111 0 23444444
Q ss_pred HHHHhccccCCccCCCCEEEEEecCCC---CccchhhhccCce-eEEEeccCCCHHHHHHHHHHHhhhc--ccCCCHHHH
Q 003743 358 IMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRF-DFHVQLPAPAASERKAILEHEIQRR--SLECSDEIL 431 (799)
Q Consensus 358 ~ld~~~~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf-~~~i~~~~p~~~er~~Il~~~l~~~--~~~~~~~~l 431 (799)
.++.... .++.+|+++|.. +.+++.+.+ |+ ...|.|++++.++..+|++..+... ...++++++
T Consensus 165 ~~~~~~~--------~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l 234 (394)
T PRK00411 165 AHEEYPG--------ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVL 234 (394)
T ss_pred hhhccCC--------CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHH
Confidence 4443321 147788888875 346777777 55 3578999999999999999887542 235788889
Q ss_pred HHHHhhcCCC--ChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 432 LDVASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 432 ~~la~~~~g~--s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
+.+++.+.+. ..+....++..|+..|..+ ....++.+|+..++...
T Consensus 235 ~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 235 DLIADLTAREHGDARVAIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 9998887442 2334445666666555433 22467788887776654
No 188
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=5.9e-13 Score=154.39 Aligned_cols=193 Identities=18% Similarity=0.253 Sum_probs=138.9
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc---------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--------- 284 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~--------- 284 (799)
.+.+|++++|.+.+.+.+.+.+..- ..+..+|||||+|||||++|+.+|+.+.....
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~--------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG--------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4678999999998888777765421 23456999999999999999999999863211
Q ss_pred ---------eeeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 285 ---------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 285 ---------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
....++.++.+.- .. .+.++.+...+. .....|++|||+|.+.. ..
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~--~~----vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a 135 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASN--NG----VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GA 135 (559)
T ss_pred HHHHHHhcCCCCCeEEeecccc--CC----HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HH
Confidence 1123444444321 11 123444444433 23345999999999852 34
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
++.|+..++.... .+++|.+|+.++.+++.+++ |+. .+.|.+|+.++...++...+...++.++++.+
T Consensus 136 ~naLLKtLEepp~---------~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al 203 (559)
T PRK05563 136 FNALLKTLEEPPA---------HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEAL 203 (559)
T ss_pred HHHHHHHhcCCCC---------CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5566666665322 36777777788999999998 775 78999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
..++..+.| +.++..++++.+.
T Consensus 204 ~~ia~~s~G-~~R~al~~Ldq~~ 225 (559)
T PRK05563 204 RLIARAAEG-GMRDALSILDQAI 225 (559)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 999998876 6777777776654
No 189
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.2e-12 Score=156.58 Aligned_cols=185 Identities=17% Similarity=0.220 Sum_probs=129.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++|+|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 345678999999999999998887631 12234899999999999999999998853
Q ss_pred --------------eEEEEeccchhhhhhcccHHHHHHHHHHh----HhcCCeEEEEcccccccCCCCCCCCchhhHHHH
Q 003743 570 --------------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 631 (799)
Q Consensus 570 --------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~ 631 (799)
.|+.++.... ..-..++++.+.+ ....+.|+||||+|.|. ....|
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHH
Confidence 2333333221 1123445544333 23456799999999993 46788
Q ss_pred HHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCC
Q 003743 632 QFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 710 (799)
Q Consensus 632 ~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 710 (799)
.||+.|+. ....+++|++|+.++.|-+.+++ |+ .++.|.+++.++..++|+.+++..++. .+..+..|+..+.|
T Consensus 139 aLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999973 44566677777888888899998 54 678999999999999999888766653 23335556666653
Q ss_pred CcHHHHHHHHH
Q 003743 711 FSGADLQALLS 721 (799)
Q Consensus 711 ~sg~di~~~~~ 721 (799)
+.+++.+++.
T Consensus 214 -dlR~Al~eLE 223 (824)
T PRK07764 214 -SVRDSLSVLD 223 (824)
T ss_pred -CHHHHHHHHH
Confidence 4444444433
No 190
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9.3e-13 Score=150.53 Aligned_cols=197 Identities=16% Similarity=0.243 Sum_probs=136.3
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+..|++++|.+.+++.+...+.. . ..+..+||+||||+|||++|+.+|+.+......
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~----~----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET----Q----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 467899999999888776664431 1 123458999999999999999999988732110
Q ss_pred ----------eeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 003743 286 ----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 355 (799)
Q Consensus 286 ----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~L 355 (799)
...++.++...-. ........+..+-.........|++|||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeeccccc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHH
Confidence 1123334332211 1122222222211111223456999999999852 345677
Q ss_pred HHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHH
Q 003743 356 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 435 (799)
Q Consensus 356 l~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la 435 (799)
+..++.... .+.+|++|+.+..+.+.+++ |+. .++|.+++.++....+...+...++.++++.+..++
T Consensus 140 LK~LEepp~---------~v~fIL~Ttd~~kil~tI~S--Rc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia 207 (546)
T PRK14957 140 LKTLEEPPE---------YVKFILATTDYHKIPVTILS--RCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA 207 (546)
T ss_pred HHHHhcCCC---------CceEEEEECChhhhhhhHHH--hee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 777776432 36667677778888888988 774 899999999999999999999989999999999999
Q ss_pred hhcCCCChhhHHHHHHHHH
Q 003743 436 SKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 436 ~~~~g~s~~dl~~lv~~A~ 454 (799)
..+.| +.+++.++++.++
T Consensus 208 ~~s~G-dlR~alnlLek~i 225 (546)
T PRK14957 208 YHAKG-SLRDALSLLDQAI 225 (546)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 98865 6777777777665
No 191
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.1e-13 Score=149.52 Aligned_cols=218 Identities=19% Similarity=0.249 Sum_probs=145.3
Q ss_pred CCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----EEEEeccchhhhh--
Q 003743 511 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-----FISVKGPELLNKY-- 583 (799)
Q Consensus 511 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~-----~i~i~~~~l~~~~-- 583 (799)
+.+-++..+++...+...+.. ..+.++++|||||||||.+++.+++++.-. +++|||..+.+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 666777777777765532211 223469999999999999999999988433 8999998765433
Q ss_pred -------------hcccHH-HHHHHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEE
Q 003743 584 -------------IGASEQ-AVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 648 (799)
Q Consensus 584 -------------~g~se~-~i~~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlv 648 (799)
.|.+.. .+..+++.... ....||++||+|.|..+.+ .++..|+...+.. ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 122222 23333333332 4567899999999986532 5677777666543 567889
Q ss_pred EEecCCCC---ccChhhcCCCCcc-eeeecCCCCHHHHHHHHHHHHccCCCCCccc---HHHHHHHCCCCcHHHHHH---
Q 003743 649 FAATSRPD---LLDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLPLADDVD---LEAIAHMTEGFSGADLQA--- 718 (799)
Q Consensus 649 i~ttn~~~---~ld~al~r~gRf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~---~~~la~~~~g~sg~di~~--- 718 (799)
|+.+|..+ .+||.+.+ +|. ..|.||||+.+|..+|++.+.+....+..++ +..+|..+. ..++|.+.
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a-~~~GDAR~aid 236 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA-AESGDARKAID 236 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH-HcCccHHHHHH
Confidence 99999875 38999998 554 5589999999999999999887653333333 333343332 33335554
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCC
Q 003743 719 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPS 761 (799)
Q Consensus 719 ~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~ 761 (799)
+|+.|+..|-+ ...+.++.+|+..|...+...
T Consensus 237 ilr~A~eiAe~-----------~~~~~v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 237 ILRRAGEIAER-----------EGSRKVSEDHVREAQEEIERD 268 (366)
T ss_pred HHHHHHHHHHh-----------hCCCCcCHHHHHHHHHHhhHH
Confidence 45655555533 345679999999886555443
No 192
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=7.5e-13 Score=150.48 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=140.7
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc------
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------ 284 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------ 284 (799)
....+.+|++++|.+.+++.+...+.. . ..+..+|||||||+|||++|+++|+.+.....
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~----g----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN----N----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc----C----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 344577899999999887777665421 1 23455899999999999999999999853211
Q ss_pred ------------eeeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhH
Q 003743 285 ------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSV 348 (799)
Q Consensus 285 ------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~ 348 (799)
....++.++.+.- ... +.++++..... .....|++|||+|.+..
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~--~gI----d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------- 131 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASN--RGI----DDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------- 131 (535)
T ss_pred cccHHHHHHhhcCCCeEEEeccccc--cCH----HHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------
Confidence 0112333332211 011 23444443322 12335999999999962
Q ss_pred HHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCH
Q 003743 349 IALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428 (799)
Q Consensus 349 ~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~ 428 (799)
..++.|+..++.... .+.+|.+|+.+..+.+++++ |.. +++|.+++.++....++..+...++.+++
T Consensus 132 -~A~NALLK~LEEpp~---------~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~ 198 (535)
T PRK08451 132 -EAFNALLKTLEEPPS---------YVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEP 198 (535)
T ss_pred -HHHHHHHHHHhhcCC---------ceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 445667777776432 26667777778999999999 754 89999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
+++..++..+.| +.+++.++++.++..
T Consensus 199 ~Al~~Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 199 EALEILARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHcCC-cHHHHHHHHHHHHHh
Confidence 999999998876 778888888776643
No 193
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=6.1e-13 Score=151.99 Aligned_cols=198 Identities=19% Similarity=0.217 Sum_probs=139.4
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce---
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL--- 285 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~--- 285 (799)
|.....|..|++++|.+.+++.+.+.+.. -..+..+||+||||+|||++|+++|+.+......
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~--------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~ 71 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN--------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD 71 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 44555678899999999887766664421 1234569999999999999999999998632110
Q ss_pred ---------------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCch
Q 003743 286 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPST 346 (799)
Q Consensus 286 ---------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 346 (799)
...++.++.+.. ...+. ++.+...+. .....|++|||+|.+..
T Consensus 72 ~Cg~C~sCr~i~~~~h~DiieIdaas~--igVd~----IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------ 133 (605)
T PRK05896 72 CCNSCSVCESINTNQSVDIVELDAASN--NGVDE----IRNIIDNINYLPTTFKYKVYIIDEAHMLST------------ 133 (605)
T ss_pred CCcccHHHHHHHcCCCCceEEeccccc--cCHHH----HHHHHHHHHhchhhCCcEEEEEechHhCCH------------
Confidence 012333433221 11222 344433332 12345999999999852
Q ss_pred hHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCC
Q 003743 347 SVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426 (799)
Q Consensus 347 ~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~ 426 (799)
...+.|+..++.... .+++|++|+.+..+.+++++ |+. .+.|++++.++...++...+...++.+
T Consensus 134 ---~A~NaLLKtLEEPp~---------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 134 ---SAWNALLKTLEEPPK---------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred ---HHHHHHHHHHHhCCC---------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 234567777776432 36777777888999999999 765 799999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+++.+..++..+.| +.+++.++++..+
T Consensus 199 s~eal~~La~lS~G-dlR~AlnlLekL~ 225 (605)
T PRK05896 199 EDNAIDKIADLADG-SLRDGLSILDQLS 225 (605)
T ss_pred CHHHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 99999999998876 5666666666543
No 194
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.2e-12 Score=150.80 Aligned_cols=186 Identities=22% Similarity=0.284 Sum_probs=131.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 570 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------------ 570 (799)
+.+..|++++|++.+++.|...+... +.+..+||+||||||||++|+++|+.+++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45578999999999999998877631 122357999999999999999999988542
Q ss_pred ------------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 571 ------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 571 ------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
++.++++. ...-..+++++..+.. +.+.|+||||+|.+. ....+.|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHH
Confidence 23333221 1223457777776632 335699999999983 45788999
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+. ....+.+|.+|+.++.+.+.+++ |+ ..+.|++++.++..+.++..+...++. .+..+..|+..+.| +.
T Consensus 141 K~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99974 44556666677778888888888 55 678999999999999998887765544 33345677777763 45
Q ss_pred HHHHHHHHHH
Q 003743 714 ADLQALLSDA 723 (799)
Q Consensus 714 ~di~~~~~~a 723 (799)
+++.+++..+
T Consensus 215 r~al~lldqa 224 (527)
T PRK14969 215 RDALSLLDQA 224 (527)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 195
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=6.7e-13 Score=154.51 Aligned_cols=198 Identities=18% Similarity=0.234 Sum_probs=138.7
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee--
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-- 286 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~-- 286 (799)
|.....|..|++|+|.+.+++.+.+.+.. . ..+..||||||+|+|||++|+++|+.+.......
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~----~----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~ 73 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKS----N----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL 73 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC
Confidence 33445678899999999888777665532 1 2345689999999999999999999986421100
Q ss_pred -------------eEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHH
Q 003743 287 -------------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 349 (799)
Q Consensus 287 -------------~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~ 349 (799)
..++.++.+. ... .+.++.+...+. .+...|++|||+|.+..
T Consensus 74 ~pC~~C~~~~~~~~Dvieidaas--n~~----vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------- 132 (725)
T PRK07133 74 EPCQECIENVNNSLDIIEMDAAS--NNG----VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------- 132 (725)
T ss_pred CchhHHHHhhcCCCcEEEEeccc--cCC----HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------
Confidence 0111121110 011 122444444443 23456999999999852
Q ss_pred HHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH
Q 003743 350 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE 429 (799)
Q Consensus 350 ~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~ 429 (799)
...+.|+..++.... .+++|++|+.++.+.+.+++ |+. ++.|.+++.++...++...+...++.++++
T Consensus 133 ~A~NALLKtLEEPP~---------~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e 200 (725)
T PRK07133 133 SAFNALLKTLEEPPK---------HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN 200 (725)
T ss_pred HHHHHHHHHhhcCCC---------ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 345567777766432 37777778888999999999 775 899999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 430 ILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 430 ~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
++..++..+.| +.+++..+++.++
T Consensus 201 Al~~LA~lS~G-slR~AlslLekl~ 224 (725)
T PRK07133 201 ALKLIAKLSSG-SLRDALSIAEQVS 224 (725)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999988876 5666666666543
No 196
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.8e-12 Score=148.20 Aligned_cols=185 Identities=20% Similarity=0.251 Sum_probs=130.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||||+|||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345678999999999999998876531 22346999999999999999999998642
Q ss_pred ------------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 570 ------------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 570 ------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
.++.++++.. ..-..++.+...+.. +...|++|||+|.|. ....+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHH
Confidence 2333433221 122346666655533 234699999999983 3467889
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
+..|+ ++...+++|.+|+.++.+.+++++ |+ ..+.|++|+.++....++..+...++. .+..+..++..+.| +
T Consensus 140 LKtLE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLE--EPPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHH--hCCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99887 344567777778889999999998 65 478999999999999999888765542 33346667777663 4
Q ss_pred HHHHHHHHH
Q 003743 713 GADLQALLS 721 (799)
Q Consensus 713 g~di~~~~~ 721 (799)
.+++.+.+.
T Consensus 214 lR~AlnlLe 222 (605)
T PRK05896 214 LRDGLSILD 222 (605)
T ss_pred HHHHHHHHH
Confidence 444444443
No 197
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.47 E-value=1.2e-12 Score=145.12 Aligned_cols=196 Identities=18% Similarity=0.257 Sum_probs=135.2
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce-----
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----- 285 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~----- 285 (799)
....+..|++++|.+.+++.+.+.+.. . ..+..+|||||||+|||++++++|+.+......
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~----~----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN----G----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 344567899999999988877765532 1 234569999999999999999999998632110
Q ss_pred -------------eeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhH
Q 003743 286 -------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSV 348 (799)
Q Consensus 286 -------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~ 348 (799)
...++.++.... .. ...++.++..+.. ....|++|||+|.+..
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------- 131 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAASN--NG----VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------- 131 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeecccc--CC----HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------
Confidence 122333433211 11 1224444444432 2345999999998851
Q ss_pred HHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCH
Q 003743 349 IALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428 (799)
Q Consensus 349 ~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~ 428 (799)
...+.|+..++.... .+++|++|+.++.+.+++++ |+. .+.|++|+.++..+++..++...++.+++
T Consensus 132 -~~~~~Ll~~le~~~~---------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~ 198 (355)
T TIGR02397 132 -SAFNALLKTLEEPPE---------HVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIED 198 (355)
T ss_pred -HHHHHHHHHHhCCcc---------ceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 234455555554222 36777777888888899998 775 78999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.+..++..+.| +++.+.+.++.+.
T Consensus 199 ~a~~~l~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 199 EALELIARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 999999988866 5555555555443
No 198
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.9e-12 Score=144.11 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=134.3
Q ss_pred ccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc-----
Q 003743 210 STQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----- 284 (799)
Q Consensus 210 ~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~----- 284 (799)
.....|..|++++|.+..++.+.+.+.. . ..+.++|||||||+|||++++++|+.+.....
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~----~----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN----N----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3445678899999999888777765532 1 23567999999999999999999999864211
Q ss_pred -eeeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 003743 285 -LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 359 (799)
Q Consensus 285 -~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~l 359 (799)
....++.++... ... ...+..++..+.. ..+.|++|||+|.+.. ...+.|+..+
T Consensus 74 ~~~~~~~~l~~~~--~~~----~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~l 132 (367)
T PRK14970 74 DFSFNIFELDAAS--NNS----VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTL 132 (367)
T ss_pred CCCcceEEecccc--CCC----HHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHH
Confidence 011222222211 111 1234444444321 3456999999998852 2344455555
Q ss_pred HHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcC
Q 003743 360 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 439 (799)
Q Consensus 360 d~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~ 439 (799)
+.... ..++|.+++....+.+++.+ |+. .+.+++|+.++...++...+...++.+++++++.++..+.
T Consensus 133 e~~~~---------~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 133 EEPPA---------HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred hCCCC---------ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 44221 25666667777888999998 665 6899999999999999999999999999999999999876
Q ss_pred CCChhhHHHHHHHHH
Q 003743 440 GYDAYDLEILVDRTV 454 (799)
Q Consensus 440 g~s~~dl~~lv~~A~ 454 (799)
| +.+.+.+.++..+
T Consensus 201 g-dlr~~~~~lekl~ 214 (367)
T PRK14970 201 G-ALRDALSIFDRVV 214 (367)
T ss_pred C-CHHHHHHHHHHHH
Confidence 5 5555555555443
No 199
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.2e-12 Score=150.40 Aligned_cols=198 Identities=17% Similarity=0.215 Sum_probs=134.4
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc------
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------ 284 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------ 284 (799)
....+.+|++|+|.+.+++.+.+.+.. . ..+.++||+||||||||++|+.+|+.+.....
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~----~----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE----N----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc----C----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 344577899999998776666554421 1 12357999999999999999999999874210
Q ss_pred ------------eeeEEEEEecccccccchhhHHHHHHHHHHHH-HhcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 285 ------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 285 ------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a-~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
....+++++.+.- ......+. +.+.+... ......||||||+|.+.. ..
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~--~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a 135 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN--RGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EA 135 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc--cCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH---------------HH
Confidence 0112334443211 11122222 22222211 223456999999999952 34
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
.+.|+..++.... .+++|++|+.+..+.+.+++ |+. +|.|+.++.++...++...+...++.++++.+
T Consensus 136 ~naLLk~LEEP~~---------~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal 203 (624)
T PRK14959 136 FNALLKTLEEPPA---------RVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203 (624)
T ss_pred HHHHHHHhhccCC---------CEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5666776665332 37788888888888888988 775 78999999999999999999988999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A 453 (799)
+.++..+.| +.++..++++++
T Consensus 204 ~lIA~~s~G-dlR~Al~lLeql 224 (624)
T PRK14959 204 RLIARRAAG-SVRDSMSLLGQV 224 (624)
T ss_pred HHHHHHcCC-CHHHHHHHHHHH
Confidence 999998876 444544555443
No 200
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=8.4e-13 Score=153.79 Aligned_cols=183 Identities=20% Similarity=0.273 Sum_probs=132.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 570 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------------ 570 (799)
+.+..|++++|++++++.|...+... +.+..+||+||+|||||++|+++|+.+...
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 45678999999999999998877631 223457999999999999999999987532
Q ss_pred ------------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 571 ------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 571 ------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
++++++... ..-..++++.+.+.. ....|++|||+|.|. ....+.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHH
Confidence 344443221 123456676665532 234699999999983 45788999
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
+.|+ +..+.+++|.+|+.++.|.+.+++ |+ ..+.|.+++.++....++.+++..++. ++..+..|+..+.| +-
T Consensus 141 k~LE--epp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~l 214 (576)
T PRK14965 141 KTLE--EPPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SM 214 (576)
T ss_pred HHHH--cCCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 9997 445667777788889999999998 55 577899999999999998888776653 34446677777764 33
Q ss_pred HHHHHHH
Q 003743 714 ADLQALL 720 (799)
Q Consensus 714 ~di~~~~ 720 (799)
+++.+++
T Consensus 215 r~al~~L 221 (576)
T PRK14965 215 RDSLSTL 221 (576)
T ss_pred HHHHHHH
Confidence 4443333
No 201
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=148.01 Aligned_cols=185 Identities=19% Similarity=0.283 Sum_probs=125.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|.++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|..++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 345678999999999999998877531 12235789999999999999999998753
Q ss_pred ------------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 570 ------------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 570 ------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
.++.++++. ...-..++.+.+.+.. +.+.|++|||+|.+. ....+.|
T Consensus 77 ~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naL 139 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNAL 139 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHH
Confidence 122222211 0122345555554432 345799999999883 4467888
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
+..|+. ....+++|.+|+.++.+.+++++ |+ ..+.|++|+.++...+++.+++..++. ++..+..|+..+.| +
T Consensus 140 Lk~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 140 LKTLEE--PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred HHHHhc--CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888874 33345555566778888889988 65 468999999999999999988877654 23335666666653 3
Q ss_pred HHHHHHHHH
Q 003743 713 GADLQALLS 721 (799)
Q Consensus 713 g~di~~~~~ 721 (799)
.+++.+.++
T Consensus 214 lr~al~~Ld 222 (486)
T PRK14953 214 MRDAASLLD 222 (486)
T ss_pred HHHHHHHHH
Confidence 344334333
No 202
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.46 E-value=2e-12 Score=149.08 Aligned_cols=198 Identities=16% Similarity=0.164 Sum_probs=130.5
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC----CceeeEEEEEe
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH----KDLVAHIVFVC 293 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~----~~~~~~~~~v~ 293 (799)
.+.|.+.+..++.|...|...+... .++..++|+|+||||||++++.+.+.+... ......++++|
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs----------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS----------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC----------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 4678899999999998887776421 233345699999999999999999888532 11225678999
Q ss_pred cccccccch-----------------hhHHHHHHHHHHHHHh--cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 003743 294 CSRLSLEKG-----------------PIIRQALSNFISEALD--HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 354 (799)
Q Consensus 294 ~s~l~~~~~-----------------~~~~~~l~~~~~~a~~--~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~ 354 (799)
|..+..... ......+..+|..... ....||+|||||.|.... ..++..
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYn 891 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFT 891 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHH
Confidence 965432211 1122344555554422 234699999999997310 122333
Q ss_pred HHHHHHHhccccCCccCCCCEEEEEecCC---CCccchhhhccCceeE-EEeccCCCHHHHHHHHHHHhhhcccCCCHHH
Q 003743 355 LVDIMDEYGEKRKSSCGIGPIAFVASAQS---LEKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRRSLECSDEI 430 (799)
Q Consensus 355 Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~---~~~ld~aL~r~gRf~~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~ 430 (799)
|.++.. .. ...+.+|+++|. ++.+++.+++ |+.. .+.|++|+.+|+.+||+..+......+++++
T Consensus 892 LFR~~~---~s------~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA 960 (1164)
T PTZ00112 892 LFDWPT---KI------NSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA 960 (1164)
T ss_pred HHHHhh---cc------CCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH
Confidence 333222 11 124889999987 5567788888 5543 5889999999999999988876445688999
Q ss_pred HHHHHhhcCCCChhhHHHH
Q 003743 431 LLDVASKCDGYDAYDLEIL 449 (799)
Q Consensus 431 l~~la~~~~g~s~~dl~~l 449 (799)
++.+|...... .+|++..
T Consensus 961 IELIArkVAq~-SGDARKA 978 (1164)
T PTZ00112 961 IQLCARKVANV-SGDIRKA 978 (1164)
T ss_pred HHHHHHhhhhc-CCHHHHH
Confidence 99998855432 2344443
No 203
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.8e-12 Score=147.37 Aligned_cols=187 Identities=22% Similarity=0.249 Sum_probs=131.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++++|++.+++.|...+... +.+..+|||||+|+|||++|+++|+.+..
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345678999999999999998877531 12335699999999999999999987631
Q ss_pred ------------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 570 ------------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 570 ------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
.++.++++.- ..-..++++.+.+.. +...|++|||+|.| ....++.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHH
Confidence 2344433221 113456666655322 23459999999998 35678899
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
++.|+.. ...+.+|.+|+.+..+.+++++ |. ..++|.+++.++....++.++...++. .+..+..|+..+.| +
T Consensus 138 LK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9999743 3445555566778889999999 64 688999999999999998888776553 33446677776664 4
Q ss_pred HHHHHHHHHHH
Q 003743 713 GADLQALLSDA 723 (799)
Q Consensus 713 g~di~~~~~~a 723 (799)
.+++.+++..+
T Consensus 212 lR~alnlLdqa 222 (535)
T PRK08451 212 LRDTLTLLDQA 222 (535)
T ss_pred HHHHHHHHHHH
Confidence 45555544433
No 204
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=8.9e-13 Score=151.85 Aligned_cols=194 Identities=20% Similarity=0.257 Sum_probs=137.4
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+..|++++|.+.+++.+.+.+.. . ..+..+||+||||+|||++|+.+|+.+......
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~----~----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ----Q----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc----C----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 457899999999888876665432 1 123458999999999999999999998642110
Q ss_pred ----------eeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 286 ----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 286 ----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
...++.++.+. ... .+.++.++..+.. ....|++|||+|.+.. ..
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~--~~~----vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a 135 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS--NTQ----VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SA 135 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc--cCC----HHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HH
Confidence 01233333321 111 1234455554432 2345999999999852 33
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
.+.|+..++.... .+.+|++|+.+..+.+.+++ |+. .++|..++.++....+...+...++.++++.+
T Consensus 136 ~naLLK~LEepp~---------~~~fIL~t~d~~kil~tI~S--Rc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al 203 (527)
T PRK14969 136 FNAMLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATAL 203 (527)
T ss_pred HHHHHHHHhCCCC---------CEEEEEEeCChhhCchhHHH--HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5566666665332 36777777888888888888 764 89999999999999999999988999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
..++..+.| +.++..+++++++.
T Consensus 204 ~~la~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 204 QLLARAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999988766 67777777777653
No 205
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=1.8e-12 Score=148.28 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=118.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCC
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 336 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~ 336 (799)
.++|||++|||||+|++++++++.... ....++++++.++...............|.... ...++|+||||+.+....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 499999999999999999999885311 115677888877654433322221111222211 356899999999886311
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC-C---CccchhhhccCceeEEEeccCCCHHHHH
Q 003743 337 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-L---EKIPQSLTSSGRFDFHVQLPAPAASERK 412 (799)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~-~---~~ld~aL~r~gRf~~~i~~~~p~~~er~ 412 (799)
.....++..+... .... ..+|| |+|. + ..+++.|+++......+.+..|+.+.|.
T Consensus 394 ---------~tqeeLF~l~N~l----~e~g-------k~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 394 ---------STQEEFFHTFNTL----HNAN-------KQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred ---------HHHHHHHHHHHHH----HhcC-------CCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 1122444433333 2221 12444 4444 3 3467899993334678899999999999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 413 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 413 ~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
+||+..+..+++.++++++++|+....+ +.++|..++.+...
T Consensus 453 aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a 494 (617)
T PRK14086 453 AILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTA 494 (617)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999998765 67788777776543
No 206
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=1.3e-12 Score=144.33 Aligned_cols=237 Identities=19% Similarity=0.239 Sum_probs=150.8
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHH--hh--CCC-CCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh-hhh
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIF--AQ--APL-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKY 583 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~--~~--~~~-~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~-~~~ 583 (799)
.++|++++++.+...+....+.-... .. .+. ....++||+||||||||++|+++|..++.+|+.+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 46899999999977663211110000 00 001 1246899999999999999999999999999999988865 358
Q ss_pred hcccH-HHHHHHHHHh----HhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCccc-----------cC
Q 003743 584 IGASE-QAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEV-----------LT 644 (799)
Q Consensus 584 ~g~se-~~i~~~f~~a----~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~-----------~~ 644 (799)
+|... ..+..++..+ ....++||||||+|++.+++...+ .-....+++.||+.|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 88753 4455555433 234678999999999987543211 11123688899999976431 22
Q ss_pred cEEEEEecCCC---------------------------C-----------------------ccChhhcCCCCcceeeec
Q 003743 645 GVFVFAATSRP---------------------------D-----------------------LLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 645 ~vlvi~ttn~~---------------------------~-----------------------~ld~al~r~gRf~~~i~~ 674 (799)
+.++|.|+|-. + .+.|+|+- |++.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 46677777651 0 02345554 99999999
Q ss_pred CCCCHHHHHHHHHHH----Hcc----C---CCCCccc---HHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 675 DFPSPRERLDILKVI----SRK----L---PLADDVD---LEAIAHM--TEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~----~~~----~---~~~~~~~---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
.+.+.+++.+|+... .+. + ++.-.++ ++.|+.. ...+-++-++.+++.....++-+....
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~---- 391 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL---- 391 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC----
Confidence 999999999998642 221 1 2222233 4555554 334557888888887776666554331
Q ss_pred CCCCCCcccHHHHH
Q 003743 739 EPGKMPVITDALLK 752 (799)
Q Consensus 739 ~~~~~~~it~e~l~ 752 (799)
.......||.+.+.
T Consensus 392 ~~~~~v~i~~~~v~ 405 (413)
T TIGR00382 392 EDLEKVVITKETVL 405 (413)
T ss_pred CCCcEEEECHHHHc
Confidence 11223467777664
No 207
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.45 E-value=5.2e-12 Score=148.15 Aligned_cols=223 Identities=22% Similarity=0.301 Sum_probs=137.9
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEE
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 574 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i 574 (799)
+..|++++|.+...+.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46788999998888877655432 123479999999999999999998655 4578999
Q ss_pred eccchh-------hhhhcccHHH----HHHHHHHh----------HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 575 KGPELL-------NKYIGASEQA----VRDIFSKA----------TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 575 ~~~~l~-------~~~~g~se~~----i~~~f~~a----------~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
++..+. ..+.|..... .+..+... ......+|||||++.|. ...+..|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHHH
Confidence 987642 1122211110 11111100 01123499999999883 3345555
Q ss_pred HhhccCc---------------------------cccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHH
Q 003743 634 LTELDGV---------------------------EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 686 (799)
Q Consensus 634 l~~ld~~---------------------------~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il 686 (799)
+..|+.- ...+-+++.+||+.++.+++++++ ||. .++|++++.+++.+|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 5555321 111124455566778889999998 886 5689999999999999
Q ss_pred HHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcC
Q 003743 687 KVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR 759 (799)
Q Consensus 687 ~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~ 759 (799)
+..+...++. .+..++.|+.++. .|+...+.+..+...++.+.... .+......|+.+|++++++.-+
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~---~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA---GKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh---ccCCCCeeECHHHHHHHhCCCc
Confidence 9988865432 2223455555543 45555455555544433332100 1122345799999999997654
No 208
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.45 E-value=4.1e-12 Score=131.68 Aligned_cols=161 Identities=16% Similarity=0.208 Sum_probs=111.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
...++++|+||||||||+|++++++.+.... ..++++++..+... +.. .....+|+|||+|.+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l 102 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPLLA------------FDF--DPEAELYAVDDVERL 102 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhc
Confidence 3457899999999999999999999874322 45677777664311 111 134679999999987
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC-C--CccchhhhccCce--eEEEeccCCC
Q 003743 333 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-L--EKIPQSLTSSGRF--DFHVQLPAPA 407 (799)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~-~--~~ld~aL~r~gRf--~~~i~~~~p~ 407 (799)
.. .....|...++...... ..+++.+++. + ..+.+.|.+ |+ ...+.+++|+
T Consensus 103 ~~---------------~~~~~L~~~~~~~~~~~-------~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~ 158 (227)
T PRK08903 103 DD---------------AQQIALFNLFNRVRAHG-------QGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLS 158 (227)
T ss_pred Cc---------------hHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCC
Confidence 41 11223334444333221 2334444443 2 134577777 65 4689999999
Q ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 408 ASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 408 ~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
.+++..++..++...++.+++++++.+++...| +.+++..+++....
T Consensus 159 ~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~ 205 (227)
T PRK08903 159 DADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDR 205 (227)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 999999999998888999999999999996554 78888888876443
No 209
>PRK08727 hypothetical protein; Validated
Probab=99.45 E-value=2.9e-12 Score=133.07 Aligned_cols=163 Identities=23% Similarity=0.306 Sum_probs=108.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~ 335 (799)
..++|+||+|||||+|+++++..+.... ..+.+++..++. ..+...+... ....+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCC
Confidence 4599999999999999999998876443 344556554422 1223334333 35569999999988621
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCcc---chhhhccCce--eEEEeccCCCHHH
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRF--DFHVQLPAPAASE 410 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~l---d~aL~r~gRf--~~~i~~~~p~~~e 410 (799)
. .....++ ..++.....+ .-+++++...|..+ +++|++ || ...+.+++|+.++
T Consensus 109 ~---------~~~~~lf----~l~n~~~~~~-------~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~ 166 (233)
T PRK08727 109 R---------EDEVALF----DFHNRARAAG-------ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVA 166 (233)
T ss_pred h---------HHHHHHH----HHHHHHHHcC-------CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHH
Confidence 1 1112333 3333332211 12444444456655 699999 75 5678999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 411 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 411 r~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.+|++..+..+++.++++++++++..+.| +.+.+.++++...
T Consensus 167 ~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 167 RAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999999988888999999999999999875 3444444454433
No 210
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.5e-12 Score=151.64 Aligned_cols=193 Identities=19% Similarity=0.223 Sum_probs=139.2
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+..|++|+|.+.+++.+.+.+.. . ..+..+|||||+|+|||++|+++|+.+......
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~----~----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT----G----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 467899999999888777765532 1 234568999999999999999999998732110
Q ss_pred ----------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 286 ----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 286 ----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
...+++++...-. .. +.++++...+. .....|++|||+|.+.. ..
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~--~v----~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a 135 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNT--GV----DDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NA 135 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCcc--CH----HHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HH
Confidence 1123334332211 11 22444444432 12345999999999862 34
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
++.|+..++.... .+.+|++|+.++.+.+.+++ |+. .+.|..++.++....+...+...++.++++.+
T Consensus 136 ~naLLk~LEepp~---------~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al 203 (576)
T PRK14965 136 FNALLKTLEEPPP---------HVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAAL 203 (576)
T ss_pred HHHHHHHHHcCCC---------CeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 5677777776433 37777888888999999999 765 78999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
..++..+.| +.++..++++.++
T Consensus 204 ~~la~~a~G-~lr~al~~Ldqli 225 (576)
T PRK14965 204 ALVARKGDG-SMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999887 5667666666554
No 211
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=4.8e-12 Score=146.26 Aligned_cols=185 Identities=22% Similarity=0.277 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||||+|||++|+++|+.+...
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 345678999999999999998887631 123369999999999999999999987532
Q ss_pred -------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 571 -------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 571 -------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
++.+++.. ...-..++++.+.+. .+.+.|++|||+|.|. ...++.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHH
Confidence 22232211 012245666654432 2455799999999983 4578889
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
++.|+ +....+++|.+|+.+..+.+++++ |+. .+.|.+++.++..++++..+...++. .+..+..|+..+.| +
T Consensus 140 LK~LE--epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIE--EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhc--cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99887 344567777777888889999998 664 67999999999999998887765543 33446667776664 4
Q ss_pred HHHHHHHHH
Q 003743 713 GADLQALLS 721 (799)
Q Consensus 713 g~di~~~~~ 721 (799)
.+++.+++.
T Consensus 214 lR~alslLd 222 (563)
T PRK06647 214 VRDAYTLFD 222 (563)
T ss_pred HHHHHHHHH
Confidence 455555444
No 212
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.44 E-value=1.9e-12 Score=132.84 Aligned_cols=175 Identities=19% Similarity=0.350 Sum_probs=112.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
..++||||+|+|||+|++++++++..... ...++++++.++.......... .+..+.... ....+|+|||++.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC
Confidence 35999999999999999999998764221 1457788877765433322221 122222333 3567999999999862
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCceeEEEeccCCCHHHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFHVQLPAPAASER 411 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf~~~i~~~~p~~~er 411 (799)
. ......|..+++.....+ ..+|+++...|.. +++.|.++......+.+.+|+.++|
T Consensus 112 ~-------------~~~q~~lf~l~n~~~~~~-------k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 112 K-------------QRTQEELFHLFNRLIESG-------KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp H-------------HHHHHHHHHHHHHHHHTT-------SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred c-------------hHHHHHHHHHHHHHHhhC-------CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 1 123344444444444332 2566666556654 4688888333356899999999999
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 412 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 412 ~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
.+|++..+..+++.+++++++++++...+ +.++|..++++..
T Consensus 172 ~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 172 RRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 99999999999999999999999998765 6777777776644
No 213
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1e-12 Score=149.63 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=134.5
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce---
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL--- 285 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~--- 285 (799)
|.....+..|.+++|.+.+.+.+.+.+.. . ..+..+|||||||+|||++|+.+|+.+......
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~----~----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~ 71 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL----Q----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGE 71 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCC
Confidence 33444577899999999888877765532 1 123458999999999999999999998631100
Q ss_pred ---------------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCch
Q 003743 286 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPST 346 (799)
Q Consensus 286 ---------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 346 (799)
...++.++.+.- .... .++.+...+. .....|++|||+|.+..
T Consensus 72 pc~~c~nc~~i~~g~~~d~~eidaas~--~gvd----~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------ 133 (486)
T PRK14953 72 PCGKCENCVEIDKGSFPDLIEIDAASN--RGID----DIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------ 133 (486)
T ss_pred CCCccHHHHHHhcCCCCcEEEEeCccC--CCHH----HHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------
Confidence 011222322110 1111 1233333322 23456999999998852
Q ss_pred hHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCC
Q 003743 347 SVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426 (799)
Q Consensus 347 ~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~ 426 (799)
..++.|+..++.... .+++|.+|+.++.+.+++.+ |+. .+.|++++.+++..++...+...++.+
T Consensus 134 ---~a~naLLk~LEepp~---------~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~i 198 (486)
T PRK14953 134 ---EAFNALLKTLEEPPP---------RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEY 198 (486)
T ss_pred ---HHHHHHHHHHhcCCC---------CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 234556666654322 25566666777888889998 765 799999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+++++..++..+.| +.+++.++++.++
T Consensus 199 d~~al~~La~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 199 EEKALDLLAQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999988776 5666666666654
No 214
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.7e-12 Score=141.71 Aligned_cols=182 Identities=21% Similarity=0.287 Sum_probs=126.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++++|.+.+.+.+...+... +.+.++|||||||+|||++|+++|+.+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345678999999999999988877631 223579999999999999999999987432
Q ss_pred -EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCc
Q 003743 571 -FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG 645 (799)
Q Consensus 571 -~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~ 645 (799)
++.++... ......++.+++.+.. +.+.|++|||+|.+. ....+.|+..++. ....
T Consensus 78 ~~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~--~~~~ 138 (367)
T PRK14970 78 NIFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE--PPAH 138 (367)
T ss_pred ceEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC--CCCc
Confidence 22222211 1223567777776543 345699999999873 3456778877764 2334
Q ss_pred EEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 003743 646 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLS 721 (799)
Q Consensus 646 vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~ 721 (799)
.++|.+|+.+..+.+++.+ |+ ..+.|++|+.++...++...+...++. ++..++.|+..+. +|++.+.+
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~----gdlr~~~~ 208 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD----GALRDALS 208 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCHHHHHH
Confidence 5555567778888999988 55 468999999999999998888776653 3344666666654 45554444
No 215
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.8e-12 Score=148.11 Aligned_cols=193 Identities=20% Similarity=0.256 Sum_probs=136.8
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.|..|++++|.+.+++.+.+.+.. . ..+..+|||||||+|||++|+++|+.+......
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~----~----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES----N----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 467899999999988877776532 1 134569999999999999999999998732100
Q ss_pred ----------eeEEEEEecccccccchhhHHHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 003743 286 ----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 351 (799)
Q Consensus 286 ----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l 351 (799)
...++.++... .... +.++.+...+ ......|++|||+|.+.. ..
T Consensus 77 ~~C~~i~~~~~~dv~~idgas--~~~v----ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a 135 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS--NTSV----QDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SA 135 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc--cCCH----HHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HH
Confidence 01122222211 0111 2233333322 224556999999999851 34
Q ss_pred HHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 003743 352 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 431 (799)
Q Consensus 352 ~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l 431 (799)
.+.|+..++.... .+++|++|+.+..+.+++++ |+. .+.|.+++.+++.++++..+...++.++++++
T Consensus 136 ~naLLK~LEepp~---------~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl 203 (563)
T PRK06647 136 FNALLKTIEEPPP---------YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEAL 203 (563)
T ss_pred HHHHHHhhccCCC---------CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5566666664322 36777777878889999999 776 78999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHH
Q 003743 432 LDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 432 ~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
..++..+.| +.+++.+++++++
T Consensus 204 ~lLa~~s~G-dlR~alslLdkli 225 (563)
T PRK06647 204 KWIAYKSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 999998876 6777777776654
No 216
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=4.9e-12 Score=128.21 Aligned_cols=190 Identities=24% Similarity=0.303 Sum_probs=135.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 580 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~ 580 (799)
....++++.|++..++.|.+-....+. | .+..++||+|++|||||++++++..++ |..+|++...++.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 346789999999999999876653321 1 356799999999999999999999876 7899999987763
Q ss_pred hhhhcccHHHHHHHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--ccCcEEEEEecCCCCc
Q 003743 581 NKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLTGVFVFAATSRPDL 657 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~~~~vlvi~ttn~~~~ 657 (799)
.+..++...+ ...+-|||+|++. + ...+.-+..|-..|+|-- ..++|+|.+|+|+-+.
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F--------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F--------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C--------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 2444555444 2345699999863 1 123445567777777643 4678999999998665
Q ss_pred cChhhcC---------------------CCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcc-cH--H--HHHHHCCCC
Q 003743 658 LDAALLR---------------------PGRLDRLLFCDFPSPRERLDILKVISRKLPLADDV-DL--E--AIAHMTEGF 711 (799)
Q Consensus 658 ld~al~r---------------------~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~--~--~la~~~~g~ 711 (799)
+...+.. ..||...|.|.+|+.++..+|++.++...++.-+. ++ + .-|....|.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~R 233 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGR 233 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4332221 23999999999999999999999999877665331 11 1 223344567
Q ss_pred cHHHHHHHHH
Q 003743 712 SGADLQALLS 721 (799)
Q Consensus 712 sg~di~~~~~ 721 (799)
||+-.++.+.
T Consensus 234 SGRtA~QF~~ 243 (249)
T PF05673_consen 234 SGRTARQFID 243 (249)
T ss_pred CHHHHHHHHH
Confidence 8877776654
No 217
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.43 E-value=5.3e-12 Score=139.62 Aligned_cols=234 Identities=18% Similarity=0.171 Sum_probs=142.6
Q ss_pred ccccCchhHHHHHHHHHHhhcCC-Cc-chhhhhcCCC-CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSP-DS-GLWFSTYHLP-LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~-~~-~~~~~~~g~~-~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
..++|.+.+++.+...+..-... .. .......++. ...++||+||||||||++|+++|+.++ .++..+++.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~ 150 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN------VPFAIADAT 150 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechh
Confidence 34588888887765544211110 00 0000001111 246899999999999999999999987 667777777
Q ss_pred cccc-cchhh-HHHHHHHHHHH----HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----c
Q 003743 296 RLSL-EKGPI-IRQALSNFISE----ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----K 365 (799)
Q Consensus 296 ~l~~-~~~~~-~~~~l~~~~~~----a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~----~ 365 (799)
.+.. .+.|. ....+..++.. .....++||||||+|.+.+.+..... ........+.+.|+..+++... .
T Consensus 151 ~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~-~~dvsg~~vq~~LL~iLeG~~~~v~~~ 229 (413)
T TIGR00382 151 TLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSI-TRDVSGEGVQQALLKIIEGTVANVPPQ 229 (413)
T ss_pred hccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccc-cccccchhHHHHHHHHhhccceecccC
Confidence 6542 12222 23333333322 22356789999999999864322111 1111112467778888876431 1
Q ss_pred cCCccCCCCEEEEEecCCC---------------------------C-----------------------ccchhhhccC
Q 003743 366 RKSSCGIGPIAFVASAQSL---------------------------E-----------------------KIPQSLTSSG 395 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~---------------------------~-----------------------~ld~aL~r~g 395 (799)
........+.++|.|+|-. + .+.|+|+ |
T Consensus 230 ~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--g 307 (413)
T TIGR00382 230 GGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--G 307 (413)
T ss_pred CCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--C
Confidence 1122223457778887751 0 0123333 4
Q ss_pred ceeEEEeccCCCHHHHHHHHHHH----hh---------hcccCCCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhcc
Q 003743 396 RFDFHVQLPAPAASERKAILEHE----IQ---------RRSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 460 (799)
Q Consensus 396 Rf~~~i~~~~p~~~er~~Il~~~----l~---------~~~~~~~~~~l~~la~~~--~g~s~~dl~~lv~~A~~~a~~r 460 (799)
|++..+.|.+++.+++.+|+... ++ ...+.+++++++++++.+ ..+-++.|+.++++.+...+..
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999999999999999998642 21 223567899999999874 3566788999998888777665
Q ss_pred c
Q 003743 461 Y 461 (799)
Q Consensus 461 ~ 461 (799)
.
T Consensus 388 ~ 388 (413)
T TIGR00382 388 L 388 (413)
T ss_pred C
Confidence 4
No 218
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1e-11 Score=140.66 Aligned_cols=181 Identities=18% Similarity=0.235 Sum_probs=126.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|++.+++.|...+... +.+..+||+||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 45678999999999999988877631 22346899999999999999999997643
Q ss_pred ------------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHH
Q 003743 570 ------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 633 (799)
Q Consensus 570 ------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~l 633 (799)
.++.+++... . .-..++++.+... ...+.|++|||+|.+. ....+.|
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~L 141 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSL 141 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHH
Confidence 2333333211 1 1133444333332 2456799999999983 3467889
Q ss_pred HhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCc
Q 003743 634 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 634 l~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 712 (799)
++.|+. ..+.+++|++|+.+..+.+++++ |+ ..+.|++++.++..++++..+++.++. ++..++.|+..+.
T Consensus 142 Lk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~--- 213 (451)
T PRK06305 142 LKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQ--- 213 (451)
T ss_pred HHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---
Confidence 998874 34466666777888889999998 65 468999999999999998887766543 3334666776665
Q ss_pred HHHHHHHHH
Q 003743 713 GADLQALLS 721 (799)
Q Consensus 713 g~di~~~~~ 721 (799)
+|++.+.+
T Consensus 214 -gdlr~a~~ 221 (451)
T PRK06305 214 -GSLRDAES 221 (451)
T ss_pred -CCHHHHHH
Confidence 45555544
No 219
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.43 E-value=4.8e-12 Score=138.07 Aligned_cols=199 Identities=19% Similarity=0.209 Sum_probs=133.6
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....|..+++++|.+.+++.+...+.. +...+++||||||||||++++++++.+..... ..
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~ 69 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKE---------------KNMPHLLFAGPPGTGKTTAALALARELYGEDW-RE 69 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-cc
Confidence 466677788999999998877777665431 11235999999999999999999999853321 13
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHHH-Hh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISEA-LD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 365 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~a-~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~ 365 (799)
.++.+++++..+ .......+....... .. ..+.+|+|||+|.+.. .....|...++....
T Consensus 70 ~~i~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------~~~~~L~~~le~~~~- 131 (319)
T PRK00440 70 NFLELNASDERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------DAQQALRRTMEMYSQ- 131 (319)
T ss_pred ceEEeccccccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------HHHHHHHHHHhcCCC-
Confidence 445555544221 111222222222111 01 2345999999998852 123445555554322
Q ss_pred cCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhh
Q 003743 366 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYD 445 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~d 445 (799)
...+|.++|....+.+++.+ |+. .+.|++++.++...+++.++...++.+++++++.++..+.| +.+.
T Consensus 132 --------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~ 199 (319)
T PRK00440 132 --------NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRK 199 (319)
T ss_pred --------CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 24566667777777788888 776 68999999999999999999999999999999999998765 4444
Q ss_pred HHHHHHH
Q 003743 446 LEILVDR 452 (799)
Q Consensus 446 l~~lv~~ 452 (799)
+.+.++.
T Consensus 200 ~~~~l~~ 206 (319)
T PRK00440 200 AINALQA 206 (319)
T ss_pred HHHHHHH
Confidence 4444443
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=99.43 E-value=2.3e-12 Score=133.49 Aligned_cols=181 Identities=11% Similarity=0.110 Sum_probs=109.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 620 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~ 620 (799)
..++||||||||||++++++|+++ +....+++..+.. .....+++..+ .+.+|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999875 3444555543211 11113333332 44699999999986432
Q ss_pred CCCchhhHHHHHHHhhccCccccC-cEEEEEecCCCCccC---hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC
Q 003743 621 DNTGVTDRVVNQFLTELDGVEVLT-GVFVFAATSRPDLLD---AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA 696 (799)
Q Consensus 621 ~~~~~~~r~~~~ll~~ld~~~~~~-~vlvi~ttn~~~~ld---~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 696 (799)
.....+...++.....+ .++|++++..|..++ +.+.++.+++..+.+++|+.+++.+|++..+...++.
T Consensus 108 -------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 108 -------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred -------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 11122333333333333 355666666677654 8899855566788999999999999999877654442
Q ss_pred -CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 697 -DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 697 -~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
++.-.+.|+....| +.+.+..++..... ..+ .....||...+++++.
T Consensus 181 l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~----~~~--------~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 181 LSDEVANFLLKRLDR-DMHTLFDALDLLDK----ASL--------QAQRKLTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHHHhccC-CHHHHHHHHHHHHH----HHH--------hcCCCCCHHHHHHHhc
Confidence 23336667776652 23333333332111 111 1123589988887763
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=99.43 E-value=3.3e-12 Score=132.64 Aligned_cols=166 Identities=19% Similarity=0.257 Sum_probs=114.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~ 335 (799)
++++||||+|||||+|++++++++.... ..+++++..++.... ..++.... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC
Confidence 6699999999999999999998875332 456677776654321 12222222 3358999999987521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCce--eEEEeccCCCHHH
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAASE 410 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf--~~~i~~~~p~~~e 410 (799)
. .....|..+++.....+ ..++++++..|.. ..+.|++ |+ ...+.+.+|+.++
T Consensus 113 ~-------------~~~~~Lf~l~n~~~~~g-------~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 113 A-------------DWEEALFHLFNRLRDSG-------RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDED 170 (234)
T ss_pred h-------------HHHHHHHHHHHHHHhcC-------CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHH
Confidence 1 11223333444333221 2566766665543 3688999 66 4678999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 411 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 411 r~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
+.++++..+..+++.+++++++++++...+ +.+.+..++......+
T Consensus 171 ~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 171 KLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 999999878888899999999999998876 6777777666554333
No 222
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=3.2e-12 Score=144.16 Aligned_cols=192 Identities=16% Similarity=0.246 Sum_probs=118.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 620 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~ 620 (799)
.+++||||||+|||+|++++++.+ +..++++++.++...+.......-...|... ...++||+|||++.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCCh--
Confidence 469999999999999999999875 6889999988776544322111111223332 2345799999999986431
Q ss_pred CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccCCC
Q 003743 621 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPL 695 (799)
Q Consensus 621 ~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~ 695 (799)
....+|...++.+...+..+|++++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..+...++
T Consensus 219 -------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 219 -------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred -------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 122233333332222334556655555544 6789998 885 78899999999999999998877654
Q ss_pred C-CcccHHHHHHHCCCCcHHHHHHHHHHHHHH-HHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 696 A-DDVDLEAIAHMTEGFSGADLQALLSDAQLS-AVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 696 ~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~-a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
. ++.-++.|+....+ +.+.+..++...+.. |..... ...||.+++++++...
T Consensus 290 ~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~----------~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 290 RIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS----------HQLLYVDDIKALLHDV 343 (445)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh----------CCCCCHHHHHHHHHHh
Confidence 3 22224555555542 234444433333211 222211 1358999998888743
No 223
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=1.6e-12 Score=146.91 Aligned_cols=189 Identities=14% Similarity=0.199 Sum_probs=118.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccH-HHHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE-QAVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se-~~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
.+++||||||||||+|++++|+++ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 369999999999999999999875 468899999887765543211 11222 22222235789999999998643
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHcc
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
. ....+|...++.+...+..+|+++...|.. +++.+.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 210 ~---------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H---------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 122334333333333445666666666766 5677887 664 57789999999999999988775
Q ss_pred CCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 693 LPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 693 ~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
.++. ++.-++.|+....| +.+++..++......+.. ....||.+..+++++.
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~------------~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKET------------TGEEVDLKEAILLLKD 331 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHH------------hCCCCCHHHHHHHHHH
Confidence 4332 22225666666552 445555554433222211 1134677766666653
No 224
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.5e-12 Score=147.11 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=139.5
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee----
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---- 286 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~---- 286 (799)
.+..+.+|++|+|.+..++.+.+.+.. . ..+.++||+||+|+|||++|+++|+.+.......
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~----g----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET----G----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc----C----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 344577899999999888777665431 1 2355799999999999999999999987432100
Q ss_pred -------------------eEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCC
Q 003743 287 -------------------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQ 343 (799)
Q Consensus 287 -------------------~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~ 343 (799)
..++.++.+.. ... +.++.++..+. .....|++|||+|.+..
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~--~gv----d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------- 146 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASH--TGV----DDIREIIESVRYRPVSARYKVYIIDEVHMLST--------- 146 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEeccccc--CCH----HHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------
Confidence 11222222211 111 23445554443 23456999999999852
Q ss_pred CchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc
Q 003743 344 PSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS 423 (799)
Q Consensus 344 ~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~ 423 (799)
..++.|+..++.... .+.+|++|+.++.+.+.+++ |+. .+.|..++.++...++...+...+
T Consensus 147 ------~a~naLLKtLEePp~---------~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 147 ------AAFNALLKTLEEPPP---------HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred ------HHHHHHHHHHHhCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcC
Confidence 345667776766433 26677777788888888988 775 799999999999999999999999
Q ss_pred cCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 424 LECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 424 ~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.++++.++.++..+.| +.+++.++++.++
T Consensus 209 i~i~~eAl~lIa~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 209 VEVEDEALALIARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999999998876 6777777776654
No 225
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.42 E-value=5.3e-12 Score=130.65 Aligned_cols=196 Identities=20% Similarity=0.241 Sum_probs=122.1
Q ss_pred ChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHH
Q 003743 513 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQ 589 (799)
Q Consensus 513 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~ 589 (799)
+...+.+.++.++.. ....+++|+||||||||++|++++..+ +.+++.+++.++....
T Consensus 21 ~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------ 81 (226)
T TIGR03420 21 GNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------ 81 (226)
T ss_pred CcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------
Confidence 456666677665431 224589999999999999999999876 5788899988875322
Q ss_pred HHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccC---hhhcCCC
Q 003743 590 AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD---AALLRPG 666 (799)
Q Consensus 590 ~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld---~al~r~g 666 (799)
..++.... .+.+|+|||+|.+.... .....+...++........+|++++..+..++ +.+.+
T Consensus 82 --~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~-- 146 (226)
T TIGR03420 82 --PEVLEGLE--QADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT-- 146 (226)
T ss_pred --HHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--
Confidence 23333332 23599999999985321 11223333333222233345554444554432 67777
Q ss_pred Cc--ceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 003743 667 RL--DRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKM 743 (799)
Q Consensus 667 Rf--~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~ 743 (799)
|+ ...+.+|+|+.+++..+++.++...++. .+-.+..|+.... -+.+++.++++.+...+... .
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~~------------~ 213 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRASLAA------------K 213 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHh------------C
Confidence 65 4788999999999999998877655443 2333566666543 46677777766554333221 1
Q ss_pred CcccHHHHHHHH
Q 003743 744 PVITDALLKSIA 755 (799)
Q Consensus 744 ~~it~e~l~~a~ 755 (799)
..||.+.+.+++
T Consensus 214 ~~i~~~~~~~~~ 225 (226)
T TIGR03420 214 RKITIPFVKEVL 225 (226)
T ss_pred CCCCHHHHHHHh
Confidence 257887777665
No 226
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.4e-12 Score=147.14 Aligned_cols=186 Identities=21% Similarity=0.209 Sum_probs=132.3
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeE---------
Q 003743 501 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF--------- 571 (799)
Q Consensus 501 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~--------- 571 (799)
.++.+..|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+.+..
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 3456678999999999999998877631 2344799999999999999999999875432
Q ss_pred --------------------EEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhh
Q 003743 572 --------------------ISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTD 627 (799)
Q Consensus 572 --------------------i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~ 627 (799)
+.+++.. ...-..++++++.+.. ..+.|++|||+|.|. .
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s------~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~ 146 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAAS------HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------T 146 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------H
Confidence 1111111 0123467777776643 335799999999983 4
Q ss_pred HHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHH
Q 003743 628 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAH 706 (799)
Q Consensus 628 r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~ 706 (799)
...+.|++.|+. ....+.+|.+|+.++.+.+.+++ |+ ..+.|+.|+.++...+++..+++.++. .+..++.|+.
T Consensus 147 ~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 147 AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 567889988873 44456666667778888888988 65 578999999999999999888766554 3344566677
Q ss_pred HCCCCcHHHHHHHHH
Q 003743 707 MTEGFSGADLQALLS 721 (799)
Q Consensus 707 ~~~g~sg~di~~~~~ 721 (799)
.+.| +.+++.+.+.
T Consensus 222 ~a~G-dlr~al~~Ld 235 (598)
T PRK09111 222 AAEG-SVRDGLSLLD 235 (598)
T ss_pred HcCC-CHHHHHHHHH
Confidence 7764 4555555444
No 227
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=4.2e-12 Score=140.63 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=123.4
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc------------
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 284 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------------ 284 (799)
.|++|+|.+.+++.+.+.+..-.. .+...+.+.+..+||+||||+|||++|+++|+.+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~-----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA-----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc-----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 578899999988887776643221 122233445678999999999999999999998763210
Q ss_pred -----eeeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 003743 285 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 355 (799)
Q Consensus 285 -----~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~L 355 (799)
....+.++..... . ...+.++.++..+.. ....|+||||+|.+.. ...+.|
T Consensus 78 ~~~~~~hpD~~~i~~~~~-~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaL 137 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGL-S----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANAL 137 (394)
T ss_pred HHhcCCCCCEEEeccccc-c----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHH
Confidence 0011222222210 0 111235555555432 3345999999999962 234566
Q ss_pred HHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHH
Q 003743 356 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 435 (799)
Q Consensus 356 l~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la 435 (799)
+..++.... .+++|.+|+.++.+.|++++ |+. .+.|++|+.++..+++... . .++++....++
T Consensus 138 Lk~LEep~~---------~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la 200 (394)
T PRK07940 138 LKAVEEPPP---------RTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRR---D--GVDPETARRAA 200 (394)
T ss_pred HHHhhcCCC---------CCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHH
Confidence 666665332 24555555558999999999 774 8999999999988877632 1 24677788888
Q ss_pred hhcCCCChhhHHH
Q 003743 436 SKCDGYDAYDLEI 448 (799)
Q Consensus 436 ~~~~g~s~~dl~~ 448 (799)
..+.|..+..+.-
T Consensus 201 ~~s~G~~~~A~~l 213 (394)
T PRK07940 201 RASQGHIGRARRL 213 (394)
T ss_pred HHcCCCHHHHHHH
Confidence 8888876554433
No 228
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=8.7e-12 Score=141.13 Aligned_cols=196 Identities=20% Similarity=0.233 Sum_probs=133.1
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+.+|++++|.+.+++.+.+.+.. . ..+..+|||||||+|||++|+++|+.+......
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~----~----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF----N----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----C----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 467899999999887766665532 1 234569999999999999999999998632100
Q ss_pred -----------eeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 003743 286 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 354 (799)
Q Consensus 286 -----------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~ 354 (799)
...++.++..... ...........+-.........|++|||+|.+.. ...+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHH
Confidence 0123333322111 1122222111111111224567999999999852 23456
Q ss_pred HHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 003743 355 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 434 (799)
Q Consensus 355 Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~l 434 (799)
|+..++.... .+.+|++|+.+..+.+++++ |+. .++|+.++.++...++...+...++.++++.++.+
T Consensus 141 LLk~lEep~~---------~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L 208 (451)
T PRK06305 141 LLKTLEEPPQ---------HVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPI 208 (451)
T ss_pred HHHHhhcCCC---------CceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6676665332 36677777888889999999 775 79999999999999999999988999999999999
Q ss_pred HhhcCCCChhhHHHHHHHH
Q 003743 435 ASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 435 a~~~~g~s~~dl~~lv~~A 453 (799)
+..+.| +.+.+.++++..
T Consensus 209 ~~~s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 209 ARAAQG-SLRDAESLYDYV 226 (451)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 998876 555555555543
No 229
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.1e-11 Score=142.47 Aligned_cols=175 Identities=19% Similarity=0.262 Sum_probs=127.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|+++.|.+.+++.|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 345578999999999999998887642 123479999999999999999999987542
Q ss_pred ---------------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHH
Q 003743 571 ---------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 631 (799)
Q Consensus 571 ---------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~ 631 (799)
++.++.. .+..-..++++++.+.. +...|+||||+|.| .....+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHH
Confidence 2222221 12334578888877643 33469999999998 345788
Q ss_pred HHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCC
Q 003743 632 QFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 710 (799)
Q Consensus 632 ~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 710 (799)
.|++.|+ +....+++|++|++++.+-+.+++ |+ ..+.|+.++.++....++.++.+.++. ....+..|+..+.|
T Consensus 140 aLLK~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLE--EPPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHh--cCCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 9999998 444567777777888889899998 65 567899999988888887777665433 22346667777664
No 230
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.41 E-value=9.6e-12 Score=135.67 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=133.3
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEe
Q 003743 501 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVK 575 (799)
Q Consensus 501 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~ 575 (799)
.++.+..|+++.|.+++.+.+...+... ...+++|+||||||||++++++++.+ ..+++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3455678999999999999998877531 11268999999999999999999986 23566666
Q ss_pred ccchhhhhhcccHHHHHHHHHHh-H----h-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEE
Q 003743 576 GPELLNKYIGASEQAVRDIFSKA-T----A-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVF 649 (799)
Q Consensus 576 ~~~l~~~~~g~se~~i~~~f~~a-~----~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi 649 (799)
+++..+ ...++..+... . . ..+.+|+|||+|.+.. ...+.|+..++.... ...+|
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~lI 136 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQ--NTRFI 136 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCC--CCeEE
Confidence 544211 11122222221 1 1 2356999999998842 234566666664333 23444
Q ss_pred EecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 003743 650 AATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAV 728 (799)
Q Consensus 650 ~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~ 728 (799)
.++|.+..+.+++.+ |+. .++|++|+.++...+++.++...++. .+..++.++..+. +|++.+.+.....+.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~----gd~r~~~~~l~~~~~ 209 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSE----GDMRKAINALQAAAA 209 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 567777777778887 664 58999999999999999988776653 3334566666554 566655443322111
Q ss_pred HHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 729 HEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 729 ~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
. ...||.+++..++...
T Consensus 210 ~-------------~~~it~~~v~~~~~~~ 226 (319)
T PRK00440 210 T-------------GKEVTEEAVYKITGTA 226 (319)
T ss_pred c-------------CCCCCHHHHHHHhCCC
Confidence 0 1358888887776443
No 231
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=2.8e-12 Score=144.63 Aligned_cols=172 Identities=16% Similarity=0.223 Sum_probs=114.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~ 335 (799)
.+++||||||+|||+|++++++.+.... ..++++++..+...........-...|.... ...++|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC
Confidence 4699999999999999999999886432 4567777665433222111111111222221 35679999999988521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC---ccchhhhccCce--eEEEeccCCCHHH
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRF--DFHVQLPAPAASE 410 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~---~ld~aL~r~gRf--~~~i~~~~p~~~e 410 (799)
. .....++..+....+. . ..+|+++++.|. .++++|++ || ...+.+++|+.++
T Consensus 218 ~---------~~qeelf~l~N~l~~~----~-------k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 218 G---------ATQEEFFHTFNSLHTE----G-------KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEG 275 (445)
T ss_pred h---------hhHHHHHHHHHHHHHC----C-------CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHH
Confidence 1 1122344433333221 1 245555544443 46789999 77 4789999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 411 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 411 r~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.+|++..+...++.++++++++++....+ +.++|...+...+
T Consensus 276 r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 276 LRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 999999999999999999999999998765 5666666665553
No 232
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.40 E-value=3.8e-12 Score=142.95 Aligned_cols=195 Identities=24% Similarity=0.260 Sum_probs=146.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeE-------EEE-
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF-------ISV- 574 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~-------i~i- 574 (799)
+.+..|++++|++.+...|...+..- +....+||.||.|||||++||.+|+.+++.- -.+
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 45678999999999999999988742 2234799999999999999999999886431 110
Q ss_pred eccchhhh-h---------hcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCc
Q 003743 575 KGPELLNK-Y---------IGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV 640 (799)
Q Consensus 575 ~~~~l~~~-~---------~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~ 640 (799)
.|..+... + ....-..++++.+.+. .+.+.|.+|||+|.| +....|.||+.|+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE-- 144 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE-- 144 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--
Confidence 11111110 1 1123356788877764 355679999999998 5678999999998
Q ss_pred cccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHH
Q 003743 641 EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQAL 719 (799)
Q Consensus 641 ~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~ 719 (799)
++...|.+|.+|..|..+++.+++ |. ..+.|..-+.++....++.++.+.++. ++..+..+++.++| |.+|...+
T Consensus 145 EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 145 EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 777889999999999999999998 44 456788889999999999999887776 44457888888885 77887777
Q ss_pred HHHHHHH
Q 003743 720 LSDAQLS 726 (799)
Q Consensus 720 ~~~a~~~ 726 (799)
+..+...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 7765433
No 233
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=7.6e-12 Score=141.57 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=158.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH---HHHHHHHHHHhcCCcEEEEcccccc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ---ALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~---~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
.+++||||+|+|||+|++++++++..... ...++++++.++.......... .+....... ....+|+|||++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 45999999999999999999998753211 1456778877765443322221 122222222 45679999999988
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC---ccchhhhccCceeEEEeccCCCHH
Q 003743 333 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFHVQLPAPAAS 409 (799)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~---~ld~aL~r~gRf~~~i~~~~p~~~ 409 (799)
.+. ......++..+... .... ..+|+++...|. .+++.|.++......+.+.+|+.+
T Consensus 219 ~~k---------~~~~e~lf~l~N~~----~~~~-------k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e 278 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNF----IEND-------KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNK 278 (450)
T ss_pred cCC---------HHHHHHHHHHHHHH----HHcC-------CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHH
Confidence 521 11122333333333 3221 134444444443 357889993223578899999999
Q ss_pred HHHHHHHHHhhhccc--CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 410 ERKAILEHEIQRRSL--ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 410 er~~Il~~~l~~~~~--~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
++.+|+++.+...++ .++++++++|+..+.| +++.+..++.+....+..... ...++.+....++.+
T Consensus 279 ~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~----------~~~it~~~v~~~l~~ 347 (450)
T PRK14087 279 TATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE----------EKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC----------CCCCCHHHHHHHHhh
Confidence 999999999988765 6899999999999887 788888888877644432210 123555544444433
Q ss_pred ccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC
Q 003743 488 FLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567 (799)
Q Consensus 488 ~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~ 567 (799)
.... -......+.+.+.+.+.+... ..+ |.|..-+=.-..+|-+|-++
T Consensus 348 ~~~~----------------~~~~~t~~~I~~~Va~~~~i~--~~d--------------l~s~~R~~~i~~~RqiamyL 395 (450)
T PRK14087 348 IPTS----------------KLGILNVKKIKEVVSEKYGIS--VNA--------------IDGKARSKSIVTARHIAMYL 395 (450)
T ss_pred cccc----------------ccCCCCHHHHHHHHHHHcCCC--HHH--------------HhCCCCCccccHHHHHHHHH
Confidence 2100 001245667777776655432 111 12333322335667777666
Q ss_pred CCeEEEEeccchhhhhhcccHHHHHH
Q 003743 568 SLRFISVKGPELLNKYIGASEQAVRD 593 (799)
Q Consensus 568 ~~~~i~i~~~~l~~~~~g~se~~i~~ 593 (799)
-..+...+.+++-..+-|.....+-.
T Consensus 396 ~r~~t~~sl~~IG~~FggrdHsTV~~ 421 (450)
T PRK14087 396 TKEILNHTLAQIGEEFGGRDHTTVIN 421 (450)
T ss_pred HHHHcCCCHHHHHHHhCCCChHHHHH
Confidence 55555555555544443454444333
No 234
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.5e-12 Score=141.97 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=122.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
.+.+..|+++.|++.+++.|...+... +.+..+||+||||||||++|+++|+.+...
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 345678999999999999988876631 223359999999999999999999988552
Q ss_pred ---------------------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCch
Q 003743 571 ---------------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGV 625 (799)
Q Consensus 571 ---------------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~ 625 (799)
++.+++... ..-..++++.+.+.. +...|+||||+|.+.
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~---------- 140 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS---------- 140 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------
Confidence 222221110 113456666555521 234699999999984
Q ss_pred hhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHH
Q 003743 626 TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAI 704 (799)
Q Consensus 626 ~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~l 704 (799)
....+.|++.++. .....++|.+|+.+..+-+++.+ |. ..+.|++++.++....++..++..+.. ++..++.|
T Consensus 141 -~~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 141 -IAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred -HHHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3456778888863 33445555566677788888887 55 478999999999998888887765432 33335666
Q ss_pred HHHCCCCcHHHHHHHHH
Q 003743 705 AHMTEGFSGADLQALLS 721 (799)
Q Consensus 705 a~~~~g~sg~di~~~~~ 721 (799)
+..+. ++++.+.+
T Consensus 215 ~~~s~----g~lr~a~~ 227 (397)
T PRK14955 215 GRKAQ----GSMRDAQS 227 (397)
T ss_pred HHHcC----CCHHHHHH
Confidence 66665 45554444
No 235
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.40 E-value=1.4e-11 Score=138.69 Aligned_cols=218 Identities=17% Similarity=0.215 Sum_probs=151.3
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcc----hh-------h--------hhcCCCCCceEEEECCCCCcH
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSG----LW-------F--------STYHLPLPGHILIHGPPGSGK 268 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~----~~-------~--------~~~g~~~~~~vLL~GppGtGK 268 (799)
-|.....+..|.++.+.+.+-..++.||+.|=.--.. .| . ...+.|..+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 5666667888999999999988888888665211111 11 1 123567778899999999999
Q ss_pred HHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCC
Q 003743 269 TSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQP 344 (799)
Q Consensus 269 T~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~ 344 (799)
||||+.+|+..| +.++++|+++-.. ...+..++..+...- ....|.+|+|||||....
T Consensus 340 TTLAHViAkqaG------YsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~---------- 401 (877)
T KOG1969|consen 340 TTLAHVIAKQAG------YSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR---------- 401 (877)
T ss_pred hHHHHHHHHhcC------ceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH----------
Confidence 999999999999 9999999998433 233344444443332 125788999999987641
Q ss_pred chhHHHHHHHHHHHHHHh------ccc------cCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHH
Q 003743 345 STSVIALTKFLVDIMDEY------GEK------RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 412 (799)
Q Consensus 345 ~~~~~~l~~~Ll~~ld~~------~~~------~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~ 412 (799)
.+.+.++..+..- ... +....+.-.+-||+.||.... |+|+.---|...+.|.+|+..-..
T Consensus 402 -----~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 402 -----AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred -----HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHH
Confidence 3344444433310 000 000111123568888897654 777643357889999999999999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 413 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 413 ~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+-|+..|..+++.++..++..|++.+++ |++..++.-.
T Consensus 475 ~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQ 512 (877)
T KOG1969|consen 475 ERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQ 512 (877)
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHH
Confidence 9999999999999999999999998877 6766555433
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.39 E-value=1.7e-11 Score=127.40 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=107.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 620 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~ 620 (799)
.+++|+||||||||++++++++.. +..+.+++..+.... ..++++.... ..+|+|||++.+.++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 379999999999999999999865 345566665443211 1122222222 2599999999985431
Q ss_pred CCCchhhHHHHHHHhhccCccccCc-EEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccCC
Q 003743 621 DNTGVTDRVVNQFLTELDGVEVLTG-VFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLP 694 (799)
Q Consensus 621 ~~~~~~~r~~~~ll~~ld~~~~~~~-vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~~ 694 (799)
.....|...+......+. .+++++++.|.. +.|.+++ |+. .++.+.+|+.+++.+|++..+...+
T Consensus 114 -------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~ 184 (235)
T PRK08084 114 -------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRG 184 (235)
T ss_pred -------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcC
Confidence 111122222222122333 466666666655 5799999 775 7889999999999999988665544
Q ss_pred CC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 695 LA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 695 ~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
+. ++.-.+.|+...+| +.+.+..++......+ +. ....||.+.+++++.
T Consensus 185 ~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~----l~--------~~~~it~~~~k~~l~ 234 (235)
T PRK08084 185 FELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS----IT--------AQRKLTIPFVKEILK 234 (235)
T ss_pred CCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH----Hh--------cCCCCCHHHHHHHHc
Confidence 33 23336777777763 3444444444321111 11 123589988888763
No 237
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=8.1e-12 Score=142.90 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=119.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCC
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 619 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~ 619 (799)
.++|||++|||||+|++++++++ +..++++++.++...+...........|... ...+++|+||||+.+.++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-
Confidence 49999999999999999999976 5789999999988766543322222233322 2346799999999986542
Q ss_pred CCCCchhhHHHHHHHhhccCccccCcEEEEEecCC-CC---ccChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccC
Q 003743 620 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-PD---LLDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKL 693 (799)
Q Consensus 620 ~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~-~~---~ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~ 693 (799)
.....|...++.+...+..+|| |+|. |. .+++.|.+ ||. .++.+.+|+.+.|..||+..+...
T Consensus 394 --------~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 --------STQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred --------HHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 1222333333333333344555 5554 43 37889998 774 667999999999999999888766
Q ss_pred CCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 694 PLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 694 ~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
++. .+.-++.|+.... -+.++|..++......+.. ....||.+.++++++.+
T Consensus 463 ~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~------------~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 463 QLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASL------------NRQPVDLGLTEIVLRDL 515 (617)
T ss_pred CCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh------------hCCCCCHHHHHHHHHHh
Confidence 554 2223566666655 2345555544433222211 11347777777777654
No 238
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=2.4e-11 Score=125.96 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=121.5
Q ss_pred CCCCCCC--ChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchh
Q 003743 506 SGWDDVG--GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 580 (799)
Q Consensus 506 ~~~~~i~--g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~ 580 (799)
.+++++. +.+.+...+..+... .....+++|+||||||||++|+++++.. +.+++.+++.++.
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 4455543 345555656554431 1234579999999999999999999865 6788888887653
Q ss_pred hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCc-EEEEEecCCCC--c
Q 003743 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG-VFVFAATSRPD--L 657 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~-vlvi~ttn~~~--~ 657 (799)
.. +.. .....+|+|||+|.+... ....|...++....... +++++++..|. .
T Consensus 83 ~~------------~~~--~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 83 LA------------FDF--DPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred HH------------Hhh--cccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 21 111 123469999999987321 22334444433333344 34444443332 2
Q ss_pred cChhhcCCCCc--ceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcc
Q 003743 658 LDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNN 734 (799)
Q Consensus 658 ld~al~r~gRf--~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 734 (799)
+.+.+.+ || ...+.+++|+.+++..+++......++. ++..++.|+.... -+.+++..+++.-...|..
T Consensus 138 l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~----- 209 (227)
T PRK08903 138 LREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLE----- 209 (227)
T ss_pred CCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH-----
Confidence 5577776 66 4788999999999999998876655443 2233566666544 2445555555542222211
Q ss_pred cCCCCCCCCCcccHHHHHHHHh
Q 003743 735 IDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 735 ~~~~~~~~~~~it~e~l~~a~~ 756 (799)
....||...+++++.
T Consensus 210 -------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 -------QKRPVTLPLLREMLA 224 (227)
T ss_pred -------hCCCCCHHHHHHHHh
Confidence 124799999998875
No 239
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.3e-12 Score=144.65 Aligned_cols=201 Identities=16% Similarity=0.229 Sum_probs=144.5
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee-eE-EEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-AH-IVF 291 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~-~~-~~~ 291 (799)
.+..|++++|.+.+...+.+.+..- .....|||.||.|||||++||.+|+.++...... .+ ...
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~--------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG--------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC--------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 4678999999998888777755211 1234599999999999999999999998543111 11 111
Q ss_pred Eeccccccc-ch---------hhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 003743 292 VCCSRLSLE-KG---------PIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 357 (799)
Q Consensus 292 v~~s~l~~~-~~---------~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~ 357 (799)
..|..+..+ .. ...-+.++.+.+.+. ....-|++|||+|+|.. ..++.|+.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~---------------~afNALLK 141 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK---------------QAFNALLK 141 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH---------------HHHHHHhc
Confidence 122222111 00 001123444444442 33455999999999962 45666666
Q ss_pred HHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhh
Q 003743 358 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 437 (799)
Q Consensus 358 ~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~ 437 (799)
-+++-.. .|.+|.+|..+..+++.+++ |+. ++.|...+.++....+..++.++++.++++++..+++.
T Consensus 142 TLEEPP~---------hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~ 209 (515)
T COG2812 142 TLEEPPS---------HVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA 209 (515)
T ss_pred ccccCcc---------CeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 5554322 48999999999999999999 776 78899999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHH
Q 003743 438 CDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 438 ~~g~s~~dl~~lv~~A~~~ 456 (799)
.+| +.+|...+++++...
T Consensus 210 a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 210 AEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred cCC-ChhhHHHHHHHHHHc
Confidence 888 789999999888744
No 240
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3e-11 Score=140.42 Aligned_cols=181 Identities=18% Similarity=0.221 Sum_probs=124.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 570 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------------ 570 (799)
+.+..|++++|++.+++.|+..+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 45678999999999999998876531 223369999999999999999999988652
Q ss_pred --------------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchh
Q 003743 571 --------------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVT 626 (799)
Q Consensus 571 --------------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~ 626 (799)
++.+++.. ...-..++++.+.+. .+...|++|||+|.+.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------- 140 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------- 140 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------
Confidence 11111110 011345666665552 2344699999999983
Q ss_pred hHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHH
Q 003743 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIA 705 (799)
Q Consensus 627 ~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la 705 (799)
....+.|++.|+. ....+++|.+|+.+..+-+.+++ |. ..+.|.+++.++....++.+++..++. ++..++.|+
T Consensus 141 ~~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 141 TAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3457789988874 33445555566777888889988 44 678999999999998888877765542 334466677
Q ss_pred HHCCCCcHHHHHHHHH
Q 003743 706 HMTEGFSGADLQALLS 721 (799)
Q Consensus 706 ~~~~g~sg~di~~~~~ 721 (799)
..+. ++++.+.+
T Consensus 216 ~~s~----Gdlr~al~ 227 (620)
T PRK14954 216 RKAQ----GSMRDAQS 227 (620)
T ss_pred HHhC----CCHHHHHH
Confidence 6665 45554444
No 241
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.37 E-value=7.3e-12 Score=140.96 Aligned_cols=207 Identities=15% Similarity=0.217 Sum_probs=139.9
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhccC----C-------------ChhHHhh----CCCCCCCceeeecCCCCcHHHH
Q 003743 501 AEGGRSGWDDVGGLTDIQNAIKEMIELPS----K-------------FPNIFAQ----APLRLRSNVLLYGPPGCGKTHI 559 (799)
Q Consensus 501 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~----~-------------~~~~~~~----~~~~~~~~vLL~GppGtGKT~l 559 (799)
.++.+..|.++.|-+.+-+.+..++...- . ..+.+.. .+.++.+-+||+||||-|||++
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHH
Confidence 34455677788887777776666554210 0 0111111 1122345588999999999999
Q ss_pred HHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHh--------HhcCCeEEEEcccccccCCCCCCCCchhhHHHH
Q 003743 560 VGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA--------TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 631 (799)
Q Consensus 560 a~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a--------~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~ 631 (799)
|+.+|+.+|+.+++||+++- .+...++..+..| ...+|.+|+|||||.-. ..+++
T Consensus 343 AHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vd 405 (877)
T KOG1969|consen 343 AHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVD 405 (877)
T ss_pred HHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHH
Confidence 99999999999999999984 3344444444444 22679999999999742 34455
Q ss_pred HHHhhccCc-------cc---------cC---cEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc
Q 003743 632 QFLTELDGV-------EV---------LT---GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 632 ~ll~~ld~~-------~~---------~~---~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
.++..+..- .. .. ..-|||.||.... |+|+.---|..+++|++|......+-|+.++..
T Consensus 406 vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 406 VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHhh
Confidence 555544310 00 00 1348888998665 666632158899999999999999999998887
Q ss_pred CCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 003743 693 LPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVH 729 (799)
Q Consensus 693 ~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~ 729 (799)
.++. +|...|...++ ++..||+..++..+..|..
T Consensus 484 E~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 484 ENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred hcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 7663 45566666666 6668999999988877753
No 242
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.37 E-value=1.2e-11 Score=134.60 Aligned_cols=134 Identities=19% Similarity=0.296 Sum_probs=87.1
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-ccCCccCCCCEEEEEecCC----CCccchhhhcc
Q 003743 320 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQS----LEKIPQSLTSS 394 (799)
Q Consensus 320 ~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~-~~~~~~~~~~v~vI~ttn~----~~~ld~aL~r~ 394 (799)
+.+|+||||||.++.+.... +.+-+...+.+.|+.++++..- .+........+++|++... |.+|-|.|.-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 45699999999999643211 1122223567778888876331 1122344557888887542 5556666665
Q ss_pred CceeEEEeccCCCHHHHHHHHH--------HH---hhhc--ccCCCHHHHHHHHhhc-------CCCChhhHHHHHHHHH
Q 003743 395 GRFDFHVQLPAPAASERKAILE--------HE---IQRR--SLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 454 (799)
Q Consensus 395 gRf~~~i~~~~p~~~er~~Il~--------~~---l~~~--~~~~~~~~l~~la~~~-------~g~s~~dl~~lv~~A~ 454 (799)
||+.++.+.+++.++...||. +| +... .+.+++++++.+|+.. .+.-.+-|..++...+
T Consensus 323 -R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999883 22 2222 3457888888888775 3444566777766665
Q ss_pred HHHh
Q 003743 455 HAAV 458 (799)
Q Consensus 455 ~~a~ 458 (799)
....
T Consensus 402 ~d~~ 405 (441)
T TIGR00390 402 EDIS 405 (441)
T ss_pred HHHH
Confidence 5443
No 243
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=4.3e-12 Score=135.15 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=96.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc------ccccchhhH------HHHHHHHHHHHHhcCC
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPII------RQALSNFISEALDHAP 321 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~------l~~~~~~~~------~~~l~~~~~~a~~~~p 321 (799)
.++++||.||||||||++++.+|+.++ .+++.+++.. +.+...... ..-....+..|. ..+
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g 135 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHN 135 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCC
Confidence 357799999999999999999999999 6666666533 333211000 000111222222 356
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh-----ccccCCccCCCCEEEEEecCCCC-----------
Q 003743 322 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-----GEKRKSSCGIGPIAFVASAQSLE----------- 385 (799)
Q Consensus 322 ~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~-----~~~~~~~~~~~~v~vI~ttn~~~----------- 385 (799)
.+|++||+|.+.+ .+...|..+++.- .........+.++.+|+|+|+.+
T Consensus 136 ~illlDEin~a~p---------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt 200 (327)
T TIGR01650 136 VALCFDEYDAGRP---------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGT 200 (327)
T ss_pred eEEEechhhccCH---------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeee
Confidence 7899999998852 4455666666631 11122233445799999999854
Q ss_pred -ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhh
Q 003743 386 -KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 420 (799)
Q Consensus 386 -~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~ 420 (799)
.++++++. ||..++.+++|+.++-.+|+.....
T Consensus 201 ~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 201 QQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred ecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 36899999 9988889999999999999986543
No 244
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=9.6e-12 Score=139.33 Aligned_cols=193 Identities=15% Similarity=0.207 Sum_probs=130.1
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+..|++++|.+.+++.+...+.. . ..+..+||+||||+|||++|+++|+.+......
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~----~----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM----G----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh----C----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 467899999998887766554421 1 234459999999999999999999998642100
Q ss_pred ------------------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCC
Q 003743 286 ------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQ 343 (799)
Q Consensus 286 ------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~ 343 (799)
..+++.++.... ...+.++++...+. .....|++|||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------
Confidence 001222222110 00123444444332 23445999999999852
Q ss_pred CchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc
Q 003743 344 PSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS 423 (799)
Q Consensus 344 ~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~ 423 (799)
...+.|+..++.... ..++|.+|+.+..+.+++++ |.. .++|.+++.++..+.+...++..+
T Consensus 142 ------~~~~~LLk~LEep~~---------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 142 ------AAFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred ------HHHHHHHHHHhcCCC---------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcC
Confidence 234455555554322 25566666677888888988 765 789999999999999999999999
Q ss_pred cCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 424 LECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 424 ~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
..++++.++.++..+.| +.+.+.+.++...
T Consensus 204 ~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 204 ISVDADALQLIGRKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999999998876 5566666555544
No 245
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.5e-11 Score=143.82 Aligned_cols=194 Identities=20% Similarity=0.226 Sum_probs=134.6
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce-----
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----- 285 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~----- 285 (799)
....+..|++++|.+.+++.+.+.+.. . ..+.++||+||||+|||++|+++|+.+......
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~----~----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS----N----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE 73 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc----C----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC
Confidence 334567899999998887776665432 1 123469999999999999999999998742110
Q ss_pred ---------------eeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCch
Q 003743 286 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPST 346 (799)
Q Consensus 286 ---------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 346 (799)
...++.++... ....+.+++++..+.. ....|++|||+|.|..
T Consensus 74 ~Cg~C~~C~~i~~g~h~D~~ei~~~~------~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------ 135 (620)
T PRK14948 74 PCGKCELCRAIAAGNALDVIEIDAAS------NTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST------------ 135 (620)
T ss_pred CCcccHHHHHHhcCCCccEEEEeccc------cCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH------------
Confidence 00122232211 1112335555544432 3345999999999851
Q ss_pred hHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCC
Q 003743 347 SVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426 (799)
Q Consensus 347 ~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~ 426 (799)
...+.|+..++.... .+++|++|+.++.+.+.+++ |+. .+.|..++.++....+...+.+.++.+
T Consensus 136 ---~a~naLLK~LEePp~---------~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~i 200 (620)
T PRK14948 136 ---AAFNALLKTLEEPPP---------RVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEI 200 (620)
T ss_pred ---HHHHHHHHHHhcCCc---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 345666777765332 36777777888888899998 775 789999999999999999888888899
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
+++.+..+++.+.| +.+++.++++.
T Consensus 201 s~~al~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 201 EPEALTLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 99999999998877 34555555544
No 246
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.36 E-value=9e-12 Score=135.77 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=88.0
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-ccCCccCCCCEEEEEecCC----CCccchhhhcc
Q 003743 320 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQS----LEKIPQSLTSS 394 (799)
Q Consensus 320 ~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~-~~~~~~~~~~v~vI~ttn~----~~~ld~aL~r~ 394 (799)
+.+|+||||||.++...... +.+-+...+.+.|+.++++..- ..........++||++.-. |.+|-|.|.-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 45699999999999653221 1222223577788888877331 1112344556888887542 5556677776
Q ss_pred CceeEEEeccCCCHHHHHHHHH--------HH---hh--hcccCCCHHHHHHHHhhcC-------CCChhhHHHHHHHHH
Q 003743 395 GRFDFHVQLPAPAASERKAILE--------HE---IQ--RRSLECSDEILLDVASKCD-------GYDAYDLEILVDRTV 454 (799)
Q Consensus 395 gRf~~~i~~~~p~~~er~~Il~--------~~---l~--~~~~~~~~~~l~~la~~~~-------g~s~~dl~~lv~~A~ 454 (799)
||+.++.+.+++.++...||. +| +. ...+.+++++++.+|+... +.-.+-|..++.+..
T Consensus 325 -R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999883 22 22 2334578888888887753 444566777776666
Q ss_pred HHHh
Q 003743 455 HAAV 458 (799)
Q Consensus 455 ~~a~ 458 (799)
....
T Consensus 404 ~d~~ 407 (443)
T PRK05201 404 EDIS 407 (443)
T ss_pred HHHh
Confidence 5544
No 247
>PRK06620 hypothetical protein; Validated
Probab=99.36 E-value=1.2e-11 Score=126.29 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=101.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
.+.++||||||||||+|++++++..+ .. ++...... ...+ ....+|+|||||.+.
T Consensus 44 ~~~l~l~Gp~G~GKThLl~a~~~~~~------~~--~~~~~~~~-----------~~~~-----~~~d~lliDdi~~~~- 98 (214)
T PRK06620 44 KFTLLIKGPSSSGKTYLTKIWQNLSN------AY--IIKDIFFN-----------EEIL-----EKYNAFIIEDIENWQ- 98 (214)
T ss_pred cceEEEECCCCCCHHHHHHHHHhccC------CE--Ecchhhhc-----------hhHH-----hcCCEEEEeccccch-
Confidence 36799999999999999999988765 21 12211100 0111 234689999998541
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc--cchhhhccCceeEEEeccCCCHHHHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFDFHVQLPAPAASERK 412 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~--ld~aL~r~gRf~~~i~~~~p~~~er~ 412 (799)
...++..+....+. +..++|+++..|.. + ++|+++......+.+.+|+.+++.
T Consensus 99 -------------~~~lf~l~N~~~e~-----------g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 99 -------------EPALLHIFNIINEK-----------QKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred -------------HHHHHHHHHHHHhc-----------CCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 01344433333322 12567777666544 5 889993333457899999999999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 413 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 413 ~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+++++.+..+++.++++++++++..+.+ +.+.+..++...
T Consensus 154 ~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 154 ILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 9999999988999999999999999876 566776666654
No 248
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.35 E-value=1.5e-11 Score=130.01 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc------ccc
Q 003743 226 TTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSL 299 (799)
Q Consensus 226 ~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~------l~~ 299 (799)
+.++++++++..++. .++++||+||||||||++|+++|+.++ .+++.++|.. +.+
T Consensus 5 ~~~~~l~~~~l~~l~-------------~g~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 5 DAVKRVTSRALRYLK-------------SGYPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHHHHh-------------cCCeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHHhh
Confidence 445666776655553 346799999999999999999999887 6777777653 222
Q ss_pred cchhhHHH-HHHH-------------------HHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 003743 300 EKGPIIRQ-ALSN-------------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 359 (799)
Q Consensus 300 ~~~~~~~~-~l~~-------------------~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~l 359 (799)
...+.... .... .+..+. ..+.+|+|||+|.+.+ .+...|+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~-~~g~~lllDEi~r~~~---------------~~q~~Ll~~L 129 (262)
T TIGR02640 66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAV-REGFTLVYDEFTRSKP---------------ETNNVLLSVF 129 (262)
T ss_pred hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHH-HcCCEEEEcchhhCCH---------------HHHHHHHHHh
Confidence 21110000 0000 111111 3456999999999752 4566777777
Q ss_pred HHhccc-------cCCccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCC
Q 003743 360 DEYGEK-------RKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 427 (799)
Q Consensus 360 d~~~~~-------~~~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~ 427 (799)
+...-. ......+.++.+|+|+|... .++++|.+ ||. .+.++.|+.++..+|+...+ .++
T Consensus 130 e~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~-----~~~ 201 (262)
T TIGR02640 130 EEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT-----DVA 201 (262)
T ss_pred cCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh-----CCC
Confidence 642200 00011234578999999853 56899999 985 89999999999999998764 234
Q ss_pred HHHHHHHH
Q 003743 428 DEILLDVA 435 (799)
Q Consensus 428 ~~~l~~la 435 (799)
++..+.+.
T Consensus 202 ~~~~~~iv 209 (262)
T TIGR02640 202 EDSAATIV 209 (262)
T ss_pred HHHHHHHH
Confidence 55444443
No 249
>PRK08727 hypothetical protein; Validated
Probab=99.35 E-value=2.2e-11 Score=126.50 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=110.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 620 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~ 620 (799)
..++|+||+|||||+++++++..+ +..+++++..++.. .+.+.++... ...+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 359999999999999999997664 56667777655332 2334444433 346999999998864321
Q ss_pred CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCc--ceeeecCCCCHHHHHHHHHHHHccCCC
Q 003743 621 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKLPL 695 (799)
Q Consensus 621 ~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf--~~~i~~~~p~~~~r~~Il~~~~~~~~~ 695 (799)
....+...++.....+.-+|+++...|.. +++.+.+ || ..++.+++|+.+++.+|++.++...++
T Consensus 111 --------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 111 --------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred --------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 11222233332222233355545556665 4799998 87 467899999999999999987654443
Q ss_pred C-CcccHHHHHHHCCCCcHHHHHHHHH---HHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 696 A-DDVDLEAIAHMTEGFSGADLQALLS---DAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 696 ~-~~~~~~~la~~~~g~sg~di~~~~~---~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
. ++..++.|+..+. +|++.+++ .....+... .+.||.+.+++.+..
T Consensus 181 ~l~~e~~~~La~~~~----rd~r~~l~~L~~l~~~~~~~------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 181 ALDEAAIDWLLTHGE----RELAGLVALLDRLDRESLAA------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CCCHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHhh
Confidence 2 2233566666655 56665533 222111111 135899998888754
No 250
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=8.8e-12 Score=141.06 Aligned_cols=191 Identities=16% Similarity=0.282 Sum_probs=120.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHH---HHHHHHHHhHhcCCeEEEEccccccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ---AVRDIFSKATAAAPCLLFFDEFDSIA 615 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~---~i~~~f~~a~~~~p~ILfiDEid~l~ 615 (799)
.+++|||++|||||+|++++++++ +..++++++.++...+...... .+..+.+.. ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999854 5788999999887766543221 222222222 345699999999885
Q ss_pred CCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHH
Q 003743 616 PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVIS 690 (799)
Q Consensus 616 ~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~ 690 (799)
++ ......|...++.....+..+|+++...|.. +++.+.+ ||. ..+.+.+|+.++|.+|++..+
T Consensus 220 ~k---------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YK---------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CC---------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 43 2233344444443333444455544444544 5788888 875 566889999999999999988
Q ss_pred ccCCCCCccc---HHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 691 RKLPLADDVD---LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 691 ~~~~~~~~~~---~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
+..++...++ ++.|+..+.| +.+.+..+|+.+...+... .....||.+.+++++...
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~----------~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQN----------PEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcc----------cCCCCCCHHHHHHHHhhc
Confidence 7655322333 4555555542 3444444454433222111 001358888888888754
No 251
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.35 E-value=7.2e-12 Score=130.46 Aligned_cols=184 Identities=19% Similarity=0.283 Sum_probs=117.4
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+.++++.+|.+....+ .-.|..++... .-.+++||||||||||+||+.|+....... +.++.+++
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq~-----------~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSA 198 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQN-----------RIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSA 198 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHcC-----------CCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEec
Confidence 5567777776654432 12222222211 223599999999999999999999876332 44555554
Q ss_pred ccccccchhhHHHHHHHHHHHHHh-----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 003743 295 SRLSLEKGPIIRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 369 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~ 369 (799)
..-. ...++++|+.+.. ....||||||||++... -...|+...+
T Consensus 199 t~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks---------------QQD~fLP~VE--------- 247 (554)
T KOG2028|consen 199 TNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS---------------QQDTFLPHVE--------- 247 (554)
T ss_pred cccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh---------------hhhcccceec---------
Confidence 4321 2235566665532 45679999999998521 1222333222
Q ss_pred cCCCCEEEEEecC--CCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhh-----hc--------ccCCCHHHHHHH
Q 003743 370 CGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR--------SLECSDEILLDV 434 (799)
Q Consensus 370 ~~~~~v~vI~ttn--~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~-----~~--------~~~~~~~~l~~l 434 (799)
.+.|++|++|. +.-.++.+|++ |+. ++.+...+.+....|+.+-+. .+ .+.+++.+++++
T Consensus 248 --~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyl 322 (554)
T KOG2028|consen 248 --NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYL 322 (554)
T ss_pred --cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHH
Confidence 13588887764 34578999999 554 677889999999999987443 11 123667789999
Q ss_pred HhhcCCCChhhHHHH
Q 003743 435 ASKCDGYDAYDLEIL 449 (799)
Q Consensus 435 a~~~~g~s~~dl~~l 449 (799)
+..++|-....|..|
T Consensus 323 a~lsdGDaR~aLN~L 337 (554)
T KOG2028|consen 323 AYLSDGDARAALNAL 337 (554)
T ss_pred HHhcCchHHHHHHHH
Confidence 999999766555443
No 252
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.9e-11 Score=143.15 Aligned_cols=185 Identities=22% Similarity=0.259 Sum_probs=125.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------- 570 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------- 570 (799)
++.+..|++++|++.+++.|...+... +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 345678999999999999998877631 122357999999999999999999887431
Q ss_pred --------------EEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHH
Q 003743 571 --------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 632 (799)
Q Consensus 571 --------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ 632 (799)
++.++... ...-..++++.+.+.. ....|+||||+|.|. ...++.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~na 139 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNA 139 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHH
Confidence 22333211 1122445555544322 334699999999983 356788
Q ss_pred HHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCC
Q 003743 633 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGF 711 (799)
Q Consensus 633 ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 711 (799)
|++.|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|+.++..+...+++.++...++. .+..+..|+..+.|
T Consensus 140 LLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEP--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888743 3445666667777788888887 55 467899999999999998887766543 23335667766654
Q ss_pred cHHHHHHHHH
Q 003743 712 SGADLQALLS 721 (799)
Q Consensus 712 sg~di~~~~~ 721 (799)
+.+++.+.+.
T Consensus 214 dlr~al~~Le 223 (585)
T PRK14950 214 SMRDAENLLQ 223 (585)
T ss_pred CHHHHHHHHH
Confidence 4444444433
No 253
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.1e-11 Score=142.79 Aligned_cols=193 Identities=17% Similarity=0.213 Sum_probs=132.7
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc----e---
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----L--- 285 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~----~--- 285 (799)
..+.+|++|+|.+.+++.+.+.+.. . ..+..+|||||||+|||++|+++|+.+..... .
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~----~----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE----G----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh----C----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4567899999999888776654421 1 12445899999999999999999999863211 0
Q ss_pred ------------eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHH
Q 003743 286 ------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 349 (799)
Q Consensus 286 ------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~ 349 (799)
...++.++.+.. .... .++++...+. .....|++|||+|.+..
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~--~~vd----~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------- 134 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASH--TSVD----DAREIIERVQFRPALARYKVYIIDEVHMLST--------------- 134 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEecccc--CCHH----HHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------
Confidence 011233333211 1112 2333333222 23456999999998852
Q ss_pred HHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH
Q 003743 350 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE 429 (799)
Q Consensus 350 ~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~ 429 (799)
...+.|+..++.... .+++|.+++..+.+.+.+++ |+. .+.|..++..+...++...+...++.++++
T Consensus 135 ~a~naLLk~LEepp~---------~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~e 202 (585)
T PRK14950 135 AAFNALLKTLEEPPP---------HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPG 202 (585)
T ss_pred HHHHHHHHHHhcCCC---------CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 334556666665432 25666667777888888888 765 789999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHH
Q 003743 430 ILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 430 ~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
.+..++..+.| +.+++.+.++..
T Consensus 203 al~~La~~s~G-dlr~al~~LekL 225 (585)
T PRK14950 203 ALEAIARAATG-SMRDAENLLQQL 225 (585)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99999998876 677766666654
No 254
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.35 E-value=2.3e-11 Score=142.75 Aligned_cols=234 Identities=16% Similarity=0.223 Sum_probs=140.4
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~ 290 (799)
+.+|++++|.+..+..+.+.+. .+.+.+++|+||||||||++|+++++...... ....+++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia---------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA---------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 6678999999988887765431 12356799999999999999999998774211 1135688
Q ss_pred EEecccccccchhh-------H----HHHHHHHHHH----------HHhcCCcEEEEccccccccCCCCCCCCCCchhHH
Q 003743 291 FVCCSRLSLEKGPI-------I----RQALSNFISE----------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 349 (799)
Q Consensus 291 ~v~~s~l~~~~~~~-------~----~~~l~~~~~~----------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~ 349 (799)
.++|..+....... . .......+.. ......++|||||++.|..
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------- 279 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------- 279 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH---------------
Confidence 88887653111000 0 0000011110 0112457999999988852
Q ss_pred HHHHHHHHHHHHhc---------cccC----------CccCCCCEEEEE-ecCCCCccchhhhccCceeEEEeccCCCHH
Q 003743 350 ALTKFLVDIMDEYG---------EKRK----------SSCGIGPIAFVA-SAQSLEKIPQSLTSSGRFDFHVQLPAPAAS 409 (799)
Q Consensus 350 ~l~~~Ll~~ld~~~---------~~~~----------~~~~~~~v~vI~-ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~ 409 (799)
.....|+..++... .... .......+++|+ |++.++.++++|++ ||. .+.|++++.+
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~e 356 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPE 356 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHH
Confidence 33444445444311 0000 000112345554 55668889999998 887 6789999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcc
Q 003743 410 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 486 (799)
Q Consensus 410 er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~ 486 (799)
++..|++.++...++.+++++++.++..+. .++...+.+..++..+..+.... ........++.+|+.+++.
T Consensus 357 di~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~---~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 357 DIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA---GKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh---ccCCCCeeECHHHHHHHhC
Confidence 999999999988777889999999888764 34443344444432222111100 0111224577777776654
No 255
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3.4e-11 Score=140.00 Aligned_cols=193 Identities=16% Similarity=0.246 Sum_probs=131.9
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.+.+|++++|.+.+++.+.+.+.. . ..+.++||+||||||||++|+.+|+.+......
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~----~----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM----D----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----C----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 467899999998877766654321 1 234559999999999999999999999742100
Q ss_pred ------------------eeEEEEEecccccccchhhHHHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCC
Q 003743 286 ------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQ 343 (799)
Q Consensus 286 ------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~ 343 (799)
..++..++.... ... +.++.+...+ .....-|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~--~~v----d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASN--NSV----DDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEeccccc--CCH----HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------
Confidence 011222221110 011 2234444333 223456999999999852
Q ss_pred CchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc
Q 003743 344 PSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS 423 (799)
Q Consensus 344 ~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~ 423 (799)
...+.|+..++.... .+++|.+|+.+..+.+.+++ |.. .++|..++.++....+...+...+
T Consensus 142 ------~a~naLLK~LEePp~---------~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~eg 203 (620)
T PRK14954 142 ------AAFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEG 203 (620)
T ss_pred ------HHHHHHHHHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcC
Confidence 235567776666432 25566666777888899998 664 899999999999999999999989
Q ss_pred cCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 424 LECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 424 ~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.++++.++.++..+.| +.+++.+.++..+
T Consensus 204 i~I~~eal~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 204 IQIDADALQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred CCCCHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 99999999999999876 5555555555444
No 256
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.34 E-value=1e-10 Score=116.22 Aligned_cols=196 Identities=21% Similarity=0.260 Sum_probs=140.2
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..+.+|+|.+.+++.+.+....|+. |. +..+|||+|..|||||++++|+..++..... .+++|+.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~----------G~-pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k 121 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAE----------GL-PANNVLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDK 121 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHc----------CC-cccceEEecCCCCChHHHHHHHHHHHHhcCC---eEEEEcH
Confidence 45689999999999999998888886 33 4577999999999999999999999885553 3677776
Q ss_pred ccccccchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
.++.. +-.++...+. +.+-|||+||+ ++ ..++ .....|...+|+--... +.
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDL-SF------e~gd-------~~yK~LKs~LeG~ve~r-----P~ 173 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDL-SF------EEGD-------DAYKALKSALEGGVEGR-----PA 173 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCC-CC------CCCc-------hHHHHHHHHhcCCcccC-----CC
Confidence 66432 2233333332 56679999998 32 2222 34566777777754432 24
Q ss_pred CEEEEEecCCCCccchhhhc--------------------cCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTS--------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 433 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r--------------------~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~ 433 (799)
+|+|.+|+|+-..+++.+.. +-||...+.|.+++.++..+|+..+++..++.++++.++.
T Consensus 174 NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~ 253 (287)
T COG2607 174 NVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHA 253 (287)
T ss_pred eEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 69999999985544322211 2399999999999999999999999999999998766544
Q ss_pred ----HHhhcCCCChhhHHHHHHH
Q 003743 434 ----VASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 434 ----la~~~~g~s~~dl~~lv~~ 452 (799)
.+....|-||+--.+.++.
T Consensus 254 eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 254 EALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHHHhcCCCccHhHHHHHHH
Confidence 3444566677655555544
No 257
>PRK05642 DNA replication initiation factor; Validated
Probab=99.34 E-value=2.3e-11 Score=126.30 Aligned_cols=179 Identities=21% Similarity=0.208 Sum_probs=114.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 620 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~ 620 (799)
..++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..+.. .+|+|||++.+.++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh--
Confidence 478999999999999999998754 6788888888775421 2233333322 499999999885431
Q ss_pred CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccCCC
Q 003743 621 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPL 695 (799)
Q Consensus 621 ~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~ 695 (799)
.....|...++.....+..+|++++..|.. ..|.+++ ||. .++.+.+|+.+++..|++..+...++
T Consensus 114 -------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 114 -------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 122334444443344456777777766655 4688998 874 66778999999999999866554443
Q ss_pred C-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 696 A-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 696 ~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
. ++.-.+.|+...+ -+.+.+..+++.-...+ +. ....||...+++++.
T Consensus 185 ~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~----l~--------~~~~it~~~~~~~L~ 233 (234)
T PRK05642 185 HLTDEVGHFILTRGT-RSMSALFDLLERLDQAS----LQ--------AQRKLTIPFLKETLG 233 (234)
T ss_pred CCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH----HH--------cCCcCCHHHHHHHhc
Confidence 2 2333566666665 24444444444222111 11 123588888887763
No 258
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.33 E-value=1.8e-11 Score=129.47 Aligned_cols=132 Identities=26% Similarity=0.359 Sum_probs=93.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEecc------chhhhhhcccHHHHHH--------------------HHHH
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP------ELLNKYIGASEQAVRD--------------------IFSK 597 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~------~l~~~~~g~se~~i~~--------------------~f~~ 597 (799)
.++||+||||||||++|+++|..++.+++.+++. ++++.+.|.....+.. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4799999999999999999999999999999765 3444443322211111 1112
Q ss_pred hHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--------------ccCcEEEEEecCCCC-----cc
Q 003743 598 ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------------VLTGVFVFAATSRPD-----LL 658 (799)
Q Consensus 598 a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--------------~~~~vlvi~ttn~~~-----~l 658 (799)
|.. .+.+|+|||++++. ..+.+.|+..|+.-. ...++.||+|+|... .+
T Consensus 102 A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 222 23599999999973 346666666664311 123567899999763 46
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHH
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVIS 690 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~ 690 (799)
++++++ || ..++++.|+.++..+|++...
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 899999 88 578999999999999998765
No 259
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=9.9e-11 Score=136.91 Aligned_cols=184 Identities=18% Similarity=0.264 Sum_probs=130.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC------------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------ 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------ 569 (799)
++.+..|++++|++.+++.|...+... +.+..+|||||+|+|||++|+++|..+.+
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 345678999999999999998887631 12335899999999999999999997642
Q ss_pred -------------eEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHH
Q 003743 570 -------------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 632 (799)
Q Consensus 570 -------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ 632 (799)
+++.+++.+. .+...++.+.+.+.. +...|++|||+|.|. ....+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHH
Confidence 3344433211 123567777766643 234699999999983 457888
Q ss_pred HHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCC
Q 003743 633 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGF 711 (799)
Q Consensus 633 ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 711 (799)
|++.|+. ....+++|.+|+.+..+-+++++ |. .++.|.+++.++....++.++...++. ....++.|+..+.|
T Consensus 141 LLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 141 FLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999974 33445566666677888899998 55 568999999999999999888777664 23346777777753
Q ss_pred cHHHHHHHH
Q 003743 712 SGADLQALL 720 (799)
Q Consensus 712 sg~di~~~~ 720 (799)
+.+++.+.+
T Consensus 215 dlr~al~~L 223 (614)
T PRK14971 215 GMRDALSIF 223 (614)
T ss_pred CHHHHHHHH
Confidence 344444433
No 260
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4.3e-11 Score=139.92 Aligned_cols=195 Identities=19% Similarity=0.203 Sum_probs=138.0
Q ss_pred CCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc-------
Q 003743 212 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------- 284 (799)
Q Consensus 212 ~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------- 284 (799)
...+..|++|+|.+.+++.+.+.+.. . ..+..+|||||+|+|||++|+.+|+.+.....
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~----~----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~C 75 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT----N----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEAC 75 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc----C----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 34567899999999888877776532 1 23455999999999999999999999862110
Q ss_pred ------------eeeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhH
Q 003743 285 ------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSV 348 (799)
Q Consensus 285 ------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~ 348 (799)
....+..++++... . .+.++.++..+.. ...-|++|||+|.+..
T Consensus 76 g~C~sC~~~~~~~~~n~~~ld~~~~~--~----vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------- 135 (614)
T PRK14971 76 NECESCVAFNEQRSYNIHELDAASNN--S----VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------- 135 (614)
T ss_pred CcchHHHHHhcCCCCceEEecccccC--C----HHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------
Confidence 11233444443211 1 1234445544422 2345999999999852
Q ss_pred HHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCH
Q 003743 349 IALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428 (799)
Q Consensus 349 ~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~ 428 (799)
...+.|+..++.... ..++|++|+....+-+++++ |+. .+.|.+++.++....+...+...++.+++
T Consensus 136 -~a~naLLK~LEepp~---------~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~ 202 (614)
T PRK14971 136 -AAFNAFLKTLEEPPS---------YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEP 202 (614)
T ss_pred -HHHHHHHHHHhCCCC---------CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 345667777776433 25666777777889999999 765 79999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.+..++..+.| +.+++.++++..+
T Consensus 203 ~al~~La~~s~g-dlr~al~~Lekl~ 227 (614)
T PRK14971 203 EALNVIAQKADG-GMRDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999998865 5666666665543
No 261
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.29 E-value=2.1e-11 Score=120.01 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=135.5
Q ss_pred ecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee
Q 003743 207 ERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV 286 (799)
Q Consensus 207 ~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~ 286 (799)
..|..+..+..+.+++|.++..+++ +.+... ..-.|++|.||||||||+-+.++|+++-... ..
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl----~via~~-----------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~k 78 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERL----SVIAKE-----------GNMPNLIISGPPGTGKTTSILCLARELLGDS-YK 78 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHH----HHHHHc-----------CCCCceEeeCCCCCchhhHHHHHHHHHhChh-hh
Confidence 3477777888899999998766544 333321 1234699999999999999999999875221 11
Q ss_pred eEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 003743 287 AHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 362 (799)
Q Consensus 287 ~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~ 362 (799)
-.+.++|+++-.+- ...+..++. |.+-+. +.-.|++|||+|++.. .....|...|+-+
T Consensus 79 e~vLELNASdeRGI--DvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~---------------gAQQAlRRtMEiy 140 (333)
T KOG0991|consen 79 EAVLELNASDERGI--DVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTA---------------GAQQALRRTMEIY 140 (333)
T ss_pred hHhhhccCcccccc--HHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhh---------------HHHHHHHHHHHHH
Confidence 34666787775443 233444443 332221 1224999999999972 3455666677766
Q ss_pred ccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCC
Q 003743 363 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 363 ~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~ 441 (799)
.+. ..+..+||..+.+-+.+.+ |+. .+.+...+..+...-+....+.+++.+.++.++.+....+|-
T Consensus 141 S~t---------tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GD 207 (333)
T KOG0991|consen 141 SNT---------TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGD 207 (333)
T ss_pred ccc---------chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccch
Confidence 653 5677888999999888888 776 678888899998888888889999999999999999888873
No 262
>PRK09087 hypothetical protein; Validated
Probab=99.28 E-value=3.1e-11 Score=124.43 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=102.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~ 335 (799)
+.++||||+|+|||+|++++++..+ . .+++...+... .+... ...+|+|||+|.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~------~--~~i~~~~~~~~-----------~~~~~---~~~~l~iDDi~~~~-- 100 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD------A--LLIHPNEIGSD-----------AANAA---AEGPVLIEDIDAGG-- 100 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC------C--EEecHHHcchH-----------HHHhh---hcCeEEEECCCCCC--
Confidence 4599999999999999999998754 2 24444322111 11111 12489999998763
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCce--eEEEeccCCCHHH
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAASE 410 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf--~~~i~~~~p~~~e 410 (799)
.+ ...++..+....+. + ..++|+++..+.. ..+.|++ |+ ...+.+.+|+.++
T Consensus 101 -~~---------~~~lf~l~n~~~~~----g-------~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 101 -FD---------ETGLFHLINSVRQA----G-------TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDAL 157 (226)
T ss_pred -CC---------HHHHHHHHHHHHhC----C-------CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHH
Confidence 11 12344444433332 1 2566666655543 3688998 66 4689999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 411 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 411 r~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.+++++.+..+++.+++++++++++...+ +.+.+..++.+..
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~ 200 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLD 200 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 999999999999999999999999999875 4455554444433
No 263
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=2.1e-11 Score=132.89 Aligned_cols=216 Identities=18% Similarity=0.167 Sum_probs=138.8
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
....+.+++|.....++++++++.+- |...+||++|++||||+.+|++|....... ...+++.+|
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a-------------p~~~~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~N 137 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA-------------PSGLPVLIIGETGTGKELFARLIHALSARR--AEAPFIAFN 137 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC-------------CCCCcEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEE
Confidence 45678999999999999999997732 345669999999999999999999544321 347899999
Q ss_pred cccccccchhhH-HHHHHHHHHHH--------HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-
Q 003743 294 CSRLSLEKGPII-RQALSNFISEA--------LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 363 (799)
Q Consensus 294 ~s~l~~~~~~~~-~~~l~~~~~~a--------~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~- 363 (799)
|+.+..+..... -+..+..|..+ .....++||||||+.+.+ .....|+.++|...
T Consensus 138 Ca~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~---------------~~Q~kLl~~le~g~~ 202 (403)
T COG1221 138 CAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP---------------EGQEKLLRVLEEGEY 202 (403)
T ss_pred HHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH---------------hHHHHHHHHHHcCce
Confidence 988765543211 01111111111 113456999999999974 44556666666522
Q ss_pred -cccCCccCCCCEEEEEecCC-C-Cccch--hhhccCceeEEEeccCCCH--HHHHHHHHHHhh----hcccC---CCHH
Q 003743 364 -EKRKSSCGIGPIAFVASAQS-L-EKIPQ--SLTSSGRFDFHVQLPAPAA--SERKAILEHEIQ----RRSLE---CSDE 429 (799)
Q Consensus 364 -~~~~~~~~~~~v~vI~ttn~-~-~~ld~--aL~r~gRf~~~i~~~~p~~--~er~~Il~~~l~----~~~~~---~~~~ 429 (799)
.-........+|.+|++||. + +.+-. .|.++ |+...|.+|+..+ .++..++..++. +.+.. ..++
T Consensus 203 ~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 203 RRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred EecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 11111122335778877774 1 22222 33332 6666778877765 345555555544 33333 2346
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhcc
Q 003743 430 ILLDVASKCDGYDAYDLEILVDRTVHAAVGR 460 (799)
Q Consensus 430 ~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r 460 (799)
++..+..+..--+.++|+++++++|..+...
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 6888877776678999999999999877543
No 264
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.27 E-value=1.5e-10 Score=120.91 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=92.8
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC------------CCccc
Q 003743 321 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKIP 388 (799)
Q Consensus 321 p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~------------~~~ld 388 (799)
|+||||||+|.|- -..+.+|...|+.--. -++|++||+ |.-+|
T Consensus 292 pGVLFIDEvHmLD---------------IE~FsFlnrAlEse~a----------PIii~AtNRG~~kiRGTd~~sPhGIP 346 (450)
T COG1224 292 PGVLFIDEVHMLD---------------IECFSFLNRALESELA----------PIIILATNRGMTKIRGTDIESPHGIP 346 (450)
T ss_pred cceEEEechhhhh---------------HHHHHHHHHHhhcccC----------cEEEEEcCCceeeecccCCcCCCCCC
Confidence 7799999999883 2677888887775322 356666675 55688
Q ss_pred hhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcc
Q 003743 389 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 468 (799)
Q Consensus 389 ~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~ 468 (799)
..|+. |.- .|...+++.++.++|++..+....+.++++++++|+....--+-+---+|+.-|...|..|
T Consensus 347 ~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r-------- 415 (450)
T COG1224 347 LDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR-------- 415 (450)
T ss_pred Hhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh--------
Confidence 88998 875 7899999999999999999999999999999999998876666555555555454445433
Q ss_pred cccccccceecccchhc
Q 003743 469 EKHIKPTLVRDDFSQAM 485 (799)
Q Consensus 469 ~~~~~~~l~~edf~~al 485 (799)
....+..+|...+.
T Consensus 416 ---g~~~V~~~dVe~a~ 429 (450)
T COG1224 416 ---GSKRVEVEDVERAK 429 (450)
T ss_pred ---CCCeeehhHHHHHH
Confidence 12345566665543
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.27 E-value=2.9e-11 Score=124.12 Aligned_cols=164 Identities=20% Similarity=0.328 Sum_probs=107.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHH-HHHHHHHHhHhcCCeEEEEcccccccCCC
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPKR 618 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~-~i~~~f~~a~~~~p~ILfiDEid~l~~~r 618 (799)
.++||||+|+|||+|.+|+++++ +..++++++.++...+...... .+..+....+ ...+|+||+++.+..+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-
Confidence 58999999999999999999864 6789999998887665432221 2223333333 3469999999998542
Q ss_pred CCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccC
Q 003743 619 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKL 693 (799)
Q Consensus 619 ~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~ 693 (799)
.+....|...++.+...+..+|+++...|.. +++.+.+ ||. ..+.+.+|+.+.|.+|++..+...
T Consensus 113 --------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 113 --------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHT
T ss_pred --------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHh
Confidence 3455566666665556666777777667765 5788888 776 477889999999999999988877
Q ss_pred CCC-CcccHHHHHHHCCCCcHHHHHHHHHH
Q 003743 694 PLA-DDVDLEAIAHMTEGFSGADLQALLSD 722 (799)
Q Consensus 694 ~~~-~~~~~~~la~~~~g~sg~di~~~~~~ 722 (799)
++. ++.-.+.|+.... -+.+++..+++.
T Consensus 183 ~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~ 211 (219)
T PF00308_consen 183 GIELPEEVIEYLARRFR-RDVRELEGALNR 211 (219)
T ss_dssp T--S-HHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhc-CCHHHHHHHHHH
Confidence 665 2222566677665 355555555543
No 266
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.26 E-value=1.1e-10 Score=127.57 Aligned_cols=180 Identities=18% Similarity=0.264 Sum_probs=126.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
...++||||+|+|||+|++|++++....... ..++++....+...........-.+-|..-. .-.+++||||+.+.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~-a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPN-ARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCC-ceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 3459999999999999999999998754332 4466666666554443333332223344333 446899999999873
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCcc---chhhhccCceeEEEeccCCCHHHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFDFHVQLPAPAASER 411 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~l---d~aL~r~gRf~~~i~~~~p~~~er 411 (799)
.. .....++..+..+.+.- ..+++++-..|..+ .|.|+++.-....+.+.+|+.+.|
T Consensus 190 k~---------~~qeefFh~FN~l~~~~-----------kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENG-----------KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcC-----------CEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 21 12346777776665532 24566665666654 589999333346789999999999
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 003743 412 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 458 (799)
Q Consensus 412 ~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 458 (799)
.+|++..+...++.++++++.+++..... +.+++...+.+....+.
T Consensus 250 ~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~ 295 (408)
T COG0593 250 LAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFAL 295 (408)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765 67788777776665443
No 267
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.4e-10 Score=125.57 Aligned_cols=220 Identities=19% Similarity=0.250 Sum_probs=143.3
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
+.+.+.+++++++...+..++... .|.++++|||||||||.+++.+++++...... ..++++||-.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~-----------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-~~~~yINc~~~~ 84 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGE-----------RPSNIIIYGPTGTGKTATVKFVMEELEESSAN-VEVVYINCLELR 84 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCC-----------CCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-CceEEEeeeeCC
Confidence 347788999999998887777533 34469999999999999999999999844222 227899996654
Q ss_pred ccch----------------hhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 003743 299 LEKG----------------PIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 361 (799)
Q Consensus 299 ~~~~----------------~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~ 361 (799)
..+. -...+.+..+.+.... ....|++|||+|.|..... .++..|....+.
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~ 152 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGE 152 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhccc
Confidence 4322 0111222222222222 3456899999999983211 234444444333
Q ss_pred hccccCCccCCCCEEEEEecCCC---CccchhhhccCcee-EEEeccCCCHHHHHHHHHHHhhh--cccCCCHHHHHHHH
Q 003743 362 YGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDEILLDVA 435 (799)
Q Consensus 362 ~~~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf~-~~i~~~~p~~~er~~Il~~~l~~--~~~~~~~~~l~~la 435 (799)
. ...+.+|+.+|.. +.+|+.+.+ ++. ..|.||+++.+|...|++..... ..-.+++++++.++
T Consensus 153 ~---------~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia 221 (366)
T COG1474 153 N---------KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIA 221 (366)
T ss_pred c---------ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 3 1248899999985 467899888 442 45899999999999999987763 34457788887777
Q ss_pred hhcCCC--ChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchh
Q 003743 436 SKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQA 484 (799)
Q Consensus 436 ~~~~g~--s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~a 484 (799)
...... +.+-.-.+++.|+..|-.+ ....++.++...+
T Consensus 222 ~~~a~~~GDAR~aidilr~A~eiAe~~-----------~~~~v~~~~v~~a 261 (366)
T COG1474 222 ALVAAESGDARKAIDILRRAGEIAERE-----------GSRKVSEDHVREA 261 (366)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHhh-----------CCCCcCHHHHHHH
Confidence 554322 3444445677777666443 2245556655544
No 268
>PRK06620 hypothetical protein; Validated
Probab=99.26 E-value=4.9e-11 Score=121.89 Aligned_cols=164 Identities=12% Similarity=0.139 Sum_probs=100.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 623 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~ 623 (799)
..++||||||||||++++++++..+..++. .... .+ ..+ ....+|+|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~~----~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------NE----EIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------ch----hHH-----hcCCEEEEeccccch--------
Confidence 579999999999999999999988754322 1110 00 111 123599999999551
Q ss_pred chhhHHHHHHHhhccCccccCcEEEEEecCCCCc--cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccCCCC-Cc
Q 003743 624 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL--LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DD 698 (799)
Q Consensus 624 ~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~--ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~ 698 (799)
...+-.+. ..+...+..++++++..|.. + |++++ |+. .++.+.+|+.+.+..+++..+...++. ++
T Consensus 99 ---~~~lf~l~---N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---EPALLHIF---NIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---HHHHHHHH---HHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 11222222 22233455777777766665 5 88888 776 467999999999999998877654432 23
Q ss_pred ccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHH
Q 003743 699 VDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIA 755 (799)
Q Consensus 699 ~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~ 755 (799)
.-.+.|+....| +.+.+..++......+ .. ....||.+.+++++
T Consensus 170 ev~~~L~~~~~~-d~r~l~~~l~~l~~~~----~~--------~~~~it~~~~~~~l 213 (214)
T PRK06620 170 QIIDFLLVNLPR-EYSKIIEILENINYFA----LI--------SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHH----HH--------cCCCCCHHHHHHHh
Confidence 336677777652 3344444333321111 10 12358888888765
No 269
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.25 E-value=2.1e-11 Score=129.88 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=97.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh--hhcccHHH----------HHHHHHHhHhcCCeEEEEcc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQA----------VRDIFSKATAAAPCLLFFDE 610 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~--~~g~se~~----------i~~~f~~a~~~~p~ILfiDE 610 (799)
.+++||.||||||||++++.+|..++.+++.+++...... ++|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4589999999999999999999999999999988765544 44432111 1123333432 457899999
Q ss_pred cccccCCCCCCCCchhhHHHHHHHhhccC------------ccccCcEEEEEecCCCC------------ccChhhcCCC
Q 003743 611 FDSIAPKRGHDNTGVTDRVVNQFLTELDG------------VEVLTGVFVFAATSRPD------------LLDAALLRPG 666 (799)
Q Consensus 611 id~l~~~r~~~~~~~~~r~~~~ll~~ld~------------~~~~~~vlvi~ttn~~~------------~ld~al~r~g 666 (799)
+|...+. +.+.|...|+. +.....+.||+|+|..+ .+++|++.
T Consensus 143 in~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987433 33443333331 11234688999999865 17899999
Q ss_pred CcceeeecCCCCHHHHHHHHHHHHcc
Q 003743 667 RLDRLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 667 Rf~~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
||-.++.+++|+.++-.+|++.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999876543
No 270
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.25 E-value=6.9e-11 Score=127.90 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=102.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-------CC--eEEEEe
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SL--RFISVK 575 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-------~~--~~i~i~ 575 (799)
+..|.+++|++++++.+.-....+ ...|+||+|+||||||++|+++|..+ +. .+..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 356899999999998876543321 12489999999999999999999988 22 111111
Q ss_pred c-cch--------hh-------hhhcccHHHH------------------HHHHHHhHhcCCeEEEEcccccccCCCCCC
Q 003743 576 G-PEL--------LN-------KYIGASEQAV------------------RDIFSKATAAAPCLLFFDEFDSIAPKRGHD 621 (799)
Q Consensus 576 ~-~~l--------~~-------~~~g~se~~i------------------~~~f~~a~~~~p~ILfiDEid~l~~~r~~~ 621 (799)
+ .++ .. .-.+.++..+ ...+..|.. .+||+||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~---GiL~lDEInrl------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANR---GYLYIDEVNLL------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCC---CeEEecChHhC-------
Confidence 0 000 00 0001111110 011111211 39999999998
Q ss_pred CCchhhHHHHHHHhhccCcc-----------ccCcEEEEEecCCCC-ccChhhcCCCCcceeeecCCCCH-HHHHHHHHH
Q 003743 622 NTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPSP-RERLDILKV 688 (799)
Q Consensus 622 ~~~~~~r~~~~ll~~ld~~~-----------~~~~vlvi~ttn~~~-~ld~al~r~gRf~~~i~~~~p~~-~~r~~Il~~ 688 (799)
...+++.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 141 ----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 141 ----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 4567778887775321 224688888888655 48999999 9999999998876 899999987
Q ss_pred HH
Q 003743 689 IS 690 (799)
Q Consensus 689 ~~ 690 (799)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 53
No 271
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.25 E-value=3.6e-11 Score=118.43 Aligned_cols=189 Identities=18% Similarity=0.227 Sum_probs=120.0
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-C----CeEEEE
Q 003743 500 SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S----LRFISV 574 (799)
Q Consensus 500 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-~----~~~i~i 574 (799)
+.++.+..+.+|+|.++..+.|.-+.... .-.+++|.||||||||+.+.++|+++ | --+.++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~g-------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEG-------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcC-------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 34556678899999999999887665431 12389999999999999999999987 3 246788
Q ss_pred eccchhhhhhcccHHHHHHHHHHhHhc----CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEE
Q 003743 575 KGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFA 650 (799)
Q Consensus 575 ~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ 650 (799)
|+++-.+ +..-...+ ..|.+-+-. .-.||++||+|++. ..++..|.+.|+-.....+ +..
T Consensus 85 NASdeRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~ttR--Fal 148 (333)
T KOG0991|consen 85 NASDERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSNTTR--FAL 148 (333)
T ss_pred cCccccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHcccch--hhh
Confidence 8877432 11111222 344443322 22599999999984 4466677777764444444 344
Q ss_pred ecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHH
Q 003743 651 ATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQ 724 (799)
Q Consensus 651 ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~ 724 (799)
+||....+-+.+.+ |.. ++.|...+..+...-+....+...+. .+-.++.+...++ +|+++.++..+
T Consensus 149 aCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~----GDMRQalNnLQ 216 (333)
T KOG0991|consen 149 ACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQ----GDMRQALNNLQ 216 (333)
T ss_pred hhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhcc----chHHHHHHHHH
Confidence 78888887777776 332 33444446666555555544433332 2233666666666 69988877543
No 272
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.25 E-value=4.8e-10 Score=117.20 Aligned_cols=127 Identities=21% Similarity=0.243 Sum_probs=85.7
Q ss_pred CeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC------------CCccChhhcCCCCcce
Q 003743 603 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR------------PDLLDAALLRPGRLDR 670 (799)
Q Consensus 603 p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~------------~~~ld~al~r~gRf~~ 670 (799)
|.||||||+|.| .-..+.-|-+.|+ ....+++|+ +||+ |+-++..|+. |+ .
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlE--se~aPIii~-AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALE--SELAPIIIL-ATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhh--cccCcEEEE-EcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 678999999887 2344445555554 334455555 5553 5557777877 65 5
Q ss_pred eeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHH
Q 003743 671 LLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDA 749 (799)
Q Consensus 671 ~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e 749 (799)
+|...||+.++..+|++.+++...+. .+-.++.|+.+-..-|-+..-+++.-|...|-++ +...|..+
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r-----------g~~~V~~~ 423 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR-----------GSKRVEVE 423 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-----------CCCeeehh
Confidence 67888999999999999999877665 4445777777766555555556666666655444 23468889
Q ss_pred HHHHHHhh
Q 003743 750 LLKSIASK 757 (799)
Q Consensus 750 ~l~~a~~~ 757 (799)
|++.|..-
T Consensus 424 dVe~a~~l 431 (450)
T COG1224 424 DVERAKEL 431 (450)
T ss_pred HHHHHHHH
Confidence 98887653
No 273
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.24 E-value=9.3e-11 Score=111.45 Aligned_cols=121 Identities=37% Similarity=0.517 Sum_probs=83.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHH---HHHHHHHhHhcCCeEEEEcccccccC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQA---VRDIFSKATAAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~---i~~~f~~a~~~~p~ILfiDEid~l~~ 616 (799)
..+++++||||||||++++.++..+ +.+++.+++.+............ ....+..+....+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 4579999999999999999999998 88999999887655433221111 1222233445667899999999872
Q ss_pred CCCCCCCchhhHHHHHHHhhccCccc----cCcEEEEEecCCCC--ccChhhcCCCCcceeeecCC
Q 003743 617 KRGHDNTGVTDRVVNQFLTELDGVEV----LTGVFVFAATSRPD--LLDAALLRPGRLDRLLFCDF 676 (799)
Q Consensus 617 ~r~~~~~~~~~r~~~~ll~~ld~~~~----~~~vlvi~ttn~~~--~ld~al~r~gRf~~~i~~~~ 676 (799)
......++..+..... ..++.+|+++|... .+++.+.+ ||+..+.+++
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 ----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred ----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1223344444433322 35678888888877 67888887 9987777763
No 274
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.7e-10 Score=124.61 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=123.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------eEEEE--
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISV-- 574 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~-------~~i~i-- 574 (799)
.+..+.++.|.+++.+.|...+... +.+..+||+||+|+|||++|+.+|+.+.. +....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4577899999999999999887642 22336999999999999999999997743 11000
Q ss_pred --ecc-----------chh---hhh-h--c-----ccHHHHHHHHHHh----HhcCCeEEEEcccccccCCCCCCCCchh
Q 003743 575 --KGP-----------ELL---NKY-I--G-----ASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVT 626 (799)
Q Consensus 575 --~~~-----------~l~---~~~-~--g-----~se~~i~~~f~~a----~~~~p~ILfiDEid~l~~~r~~~~~~~~ 626 (799)
.|. ++. ..+ . | -+-..++.+.+.. ..+...|++|||+|.|.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 010 000 000 0 0 0123344443332 23456799999999983
Q ss_pred hHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHH
Q 003743 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAH 706 (799)
Q Consensus 627 ~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~ 706 (799)
....+.|++.|+. ...++++|..|+.|+.+.|.+++ |+ ..+.|++|+.++..++++.......++ +.....++.
T Consensus 155 ~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHH
Confidence 4567889999974 33445555567889998999998 66 589999999999999998743322211 223556777
Q ss_pred HCCCCcHHHHHHHHHHHH
Q 003743 707 MTEGFSGADLQALLSDAQ 724 (799)
Q Consensus 707 ~~~g~sg~di~~~~~~a~ 724 (799)
.+.|- ++...+++....
T Consensus 229 ~s~G~-pr~Al~ll~~~~ 245 (351)
T PRK09112 229 RSKGS-VRKALLLLNYGG 245 (351)
T ss_pred HcCCC-HHHHHHHHhcCc
Confidence 77653 444444444443
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.22 E-value=2.3e-10 Score=135.90 Aligned_cols=142 Identities=22% Similarity=0.294 Sum_probs=98.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc-----------ccccchhhHHHHHHHHHHHHHhcCCc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-----------LSLEKGPIIRQALSNFISEALDHAPS 322 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~-----------l~~~~~~~~~~~l~~~~~~a~~~~p~ 322 (799)
..+++||-|.||+|||+++.++|+..| ...+.+|.++ +....+|++.=.-...+.. ...+.
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG------~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a--mr~G~ 1613 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTG------KKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA--MRDGG 1613 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhc------CceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH--hhcCC
Confidence 456699999999999999999999999 5566666533 2222223221110111111 24566
Q ss_pred EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----cCCccCCCCEEEEEecCCCC------ccchhh
Q 003743 323 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----RKSSCGIGPIAFVASAQSLE------KIPQSL 391 (799)
Q Consensus 323 IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~-----~~~~~~~~~v~vI~ttn~~~------~ld~aL 391 (799)
.++|||++... +.++..|...+|+.... ...+..+.++.|+||-|+-+ .+|..+
T Consensus 1614 WVlLDEiNLaS---------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1614 WVLLDEINLAS---------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred EEEeehhhhhH---------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence 89999995542 26788888888875532 11234456788999988743 588999
Q ss_pred hccCceeEEEeccCCCHHHHHHHHHHHhhh
Q 003743 392 TSSGRFDFHVQLPAPAASERKAILEHEIQR 421 (799)
Q Consensus 392 ~r~gRf~~~i~~~~p~~~er~~Il~~~l~~ 421 (799)
.. ||. +|.+..++.++...|+..++..
T Consensus 1679 ~n--RFs-vV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1679 LN--RFS-VVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred hh--hhh-eEEecccccchHHHHHHhhCCc
Confidence 99 998 8899999999999999877653
No 276
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.1e-10 Score=125.55 Aligned_cols=213 Identities=22% Similarity=0.285 Sum_probs=134.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
...++||||+|.|||+|++|++++. +..+++++..++...++-.....-.+-|+.-. .-.+++||+++.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3469999999999999999999876 45789999988877776554443334455444 3469999999999765
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHcc
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
. +...+|...+..+...+..+|+.+...|.. +.|.|.+ ||. .++.+.+|+.+.|..|++..+..
T Consensus 191 ~---------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 191 E---------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred h---------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 2 223344433333344455667666666766 5688998 887 46688999999999999987766
Q ss_pred CCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCC---CCH----
Q 003743 693 LPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPS---VSE---- 764 (799)
Q Consensus 693 ~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~---~~~---- 764 (799)
.++. ++.-...++.... -+.+++..+++.....|... ...||.+.+.+++...... ++.
T Consensus 260 ~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~------------~~~iTi~~v~e~L~~~~~~~~~itie~I~ 326 (408)
T COG0593 260 RGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFT------------KRAITIDLVKEILKDLLRAGEKITIEDIQ 326 (408)
T ss_pred cCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhc------------CccCcHHHHHHHHHHhhcccccCCHHHHH
Confidence 6554 3333566676655 24455444444333222211 1256777776666543322 333
Q ss_pred HHHHHHHHHHHHhhcCC
Q 003743 765 AEKLRLYSIYGQFLDSK 781 (799)
Q Consensus 765 ~~~~~~~~~~~~f~~~~ 781 (799)
+...+||++...-..|.
T Consensus 327 ~~Va~~y~v~~~dl~s~ 343 (408)
T COG0593 327 KIVAEYYNVKVSDLLSK 343 (408)
T ss_pred HHHHHHhCCCHHHhhcc
Confidence 33445555544444443
No 277
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=1.6e-10 Score=128.61 Aligned_cols=144 Identities=14% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec-----ccccccchhhHHHH-HHHHHHHHHh---cCC
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC-----SRLSLEKGPIIRQA-LSNFISEALD---HAP 321 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~-----s~l~~~~~~~~~~~-l~~~~~~a~~---~~p 321 (799)
.+..+.++||+||||||||++|++++..+.... ++..+.+ +++.+... .... -...|..... ...
T Consensus 35 aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l~--i~~~~~~g~f~r~~~G~L~~A 108 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPLS--IQALKDEGRYQRLTSGYLPEA 108 (498)
T ss_pred HHccCCCEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcHH--HhhhhhcCchhhhcCCccccc
Confidence 345678899999999999999999999876321 2222222 23333210 0000 0111111111 123
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-cccCCccCCCCEEEEEecCCCC---ccchhhhccCce
Q 003743 322 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRF 397 (799)
Q Consensus 322 ~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~-~~~~~~~~~~~v~vI~ttn~~~---~ld~aL~r~gRf 397 (799)
.+||+|||+.+.+ ...+.|+..|.+.. ............+++++||... ...+++.. ||
T Consensus 109 ~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RF 171 (498)
T PRK13531 109 EIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RM 171 (498)
T ss_pred cEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hE
Confidence 4899999987752 67788888886533 1111122223355566667532 23358999 99
Q ss_pred eEEEeccCCC-HHHHHHHHHH
Q 003743 398 DFHVQLPAPA-ASERKAILEH 417 (799)
Q Consensus 398 ~~~i~~~~p~-~~er~~Il~~ 417 (799)
..++.+|+|+ .++..+|+..
T Consensus 172 liri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEEEECCCCCchHHHHHHHHc
Confidence 8899999997 4666777765
No 278
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=2.4e-10 Score=114.89 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=99.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCc------------------eeeEEEEEecccccccchhhHHHHHHHHHHH
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISE 315 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~------------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~ 315 (799)
.+..+|||||+|+|||++++.+++.+..... ....+..+.... .. ...+.+++++..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 3456999999999999999999999863200 000112221111 00 111234444444
Q ss_pred HHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhh
Q 003743 316 ALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 391 (799)
Q Consensus 316 a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL 391 (799)
+.. ....|++|||+|.+.. ...+.|+..++.... ...+|++|+.+..+.+++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~~~---------~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE---------------AAANALLKTLEEPPP---------NTLFILITPSPEKLLPTI 143 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChHhChHHH
Confidence 432 3456999999999862 234456666655322 256666677778999999
Q ss_pred hccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCC
Q 003743 392 TSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 392 ~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~ 441 (799)
++ |+. .+.|++|+.++..+++... + ++++.+..++..+.|.
T Consensus 144 ~s--r~~-~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 144 RS--RCQ-VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred Hh--hcE-EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 99 764 8999999999999888875 3 6788888888888763
No 279
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.20 E-value=1.5e-10 Score=126.08 Aligned_cols=201 Identities=16% Similarity=0.151 Sum_probs=129.6
Q ss_pred ccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 003743 221 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 300 (799)
Q Consensus 221 l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~ 300 (799)
++|....+.++++.+..+.. ...+|||+|++||||+++|+++....... ..+++.+||..+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~-------------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~---~~pfv~vnc~~~~~~ 64 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-------------LDRPVLIIGERGTGKELIAARLHYLSKRW---QGPLVKLNCAALSEN 64 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCChHHHHHHHHHHhcCcc---CCCeEEEeCCCCChH
Confidence 46777788888888766643 24559999999999999999998865422 268999999876432
Q ss_pred chhhHHHHH----HHHHH--------HHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 003743 301 KGPIIRQAL----SNFIS--------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 366 (799)
Q Consensus 301 ~~~~~~~~l----~~~~~--------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~--~~~ 366 (799)
. ....+ ...|. .......++||||||+.|.. .....|+..++... ...
T Consensus 65 ~---l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~---------------~~Q~~Ll~~l~~~~~~~~g 126 (329)
T TIGR02974 65 L---LDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL---------------LVQEKLLRVIEYGEFERVG 126 (329)
T ss_pred H---HHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH---------------HHHHHHHHHHHcCcEEecC
Confidence 1 11110 00000 01123567999999999862 45556666665422 101
Q ss_pred CCccCCCCEEEEEecCCC-------CccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh------cc--cCCCH
Q 003743 367 KSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR------RS--LECSD 428 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~------~~--~~~~~ 428 (799)
.......++.+|++|+.. ..+.+.|.. |+. ..|.+|+... +++..+++.++.. .. ..+++
T Consensus 127 ~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~ 204 (329)
T TIGR02974 127 GSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTP 204 (329)
T ss_pred CCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCH
Confidence 111112357888888752 234566666 664 3566666653 5566666665542 12 35899
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
+++..|..+....+.++|++++.+++..+
T Consensus 205 ~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 205 QAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 99999999988889999999999887654
No 280
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=2.3e-10 Score=115.00 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=97.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCe------------------------EEEEeccchhhhhhcccHHHHHHHHHHh
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLR------------------------FISVKGPELLNKYIGASEQAVRDIFSKA 598 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~------------------------~i~i~~~~l~~~~~g~se~~i~~~f~~a 598 (799)
+..+||+||+|+|||++|++++..+... +..+.... . ...-+.++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHH
Confidence 3469999999999999999999876321 22222110 0 01234566666655
Q ss_pred Hh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 599 TA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 599 ~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
.. +.+.|++|||+|.+. ....+.|+..|+. .....++|.+|+.+..+.+++++ |+ ..+.|
T Consensus 89 ~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 33 445799999999983 3467788888875 33445555667788889999998 66 58899
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCC
Q 003743 675 DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEG 710 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g 710 (799)
++|+.++..++++.. +++ +..++.++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999999999888776 232 2335555555553
No 281
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.20 E-value=2.3e-10 Score=124.72 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=133.3
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
.+++++|....+..+++.+..+.. .+.+|||+|++||||+++|+++...... ...+++.++|..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~-------------~~~pVlI~GE~GtGK~~lA~~iH~~s~r---~~~pfv~v~c~~ 67 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP-------------LDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAA 67 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCCcHHHHHHHHHHhCCc---cCCCeEEEeCCC
Confidence 356789999999999998877653 3445999999999999999999875432 126899999998
Q ss_pred ccccchhhHHHHH---------------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 003743 297 LSLEKGPIIRQAL---------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 361 (799)
Q Consensus 297 l~~~~~~~~~~~l---------------~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~ 361 (799)
+.... ....+ ...+ .....+.|||||||.+.. .....|...++.
T Consensus 68 ~~~~~---~~~~lfg~~~~~~~g~~~~~~g~l---~~a~gGtL~l~~i~~L~~---------------~~Q~~L~~~l~~ 126 (326)
T PRK11608 68 LNENL---LDSELFGHEAGAFTGAQKRHPGRF---ERADGGTLFLDELATAPM---------------LVQEKLLRVIEY 126 (326)
T ss_pred CCHHH---HHHHHccccccccCCcccccCCch---hccCCCeEEeCChhhCCH---------------HHHHHHHHHHhc
Confidence 64221 11111 0112 224567999999999962 455566666653
Q ss_pred hc--cccCCccCCCCEEEEEecCCC-------CccchhhhccCce-eEEEeccCCCH--HHHHHHHHHHhhh----cc--
Q 003743 362 YG--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQR----RS-- 423 (799)
Q Consensus 362 ~~--~~~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf-~~~i~~~~p~~--~er~~Il~~~l~~----~~-- 423 (799)
.. ..........++.+|++|+.. ..+.+.|.. || ...|.+|+... +++..+++.++.. .+
T Consensus 127 ~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~ 204 (326)
T PRK11608 127 GELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLP 204 (326)
T ss_pred CcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCC
Confidence 22 100000111246778877652 234566666 77 34667777654 4556666666532 12
Q ss_pred --cCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 424 --LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 424 --~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
..++++++..+..+..-.|.++|++++++++..+
T Consensus 205 ~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 205 LFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 3578999999999988889999999999887543
No 282
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.6e-10 Score=131.75 Aligned_cols=169 Identities=25% Similarity=0.352 Sum_probs=126.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..++.++|-++..+.+.+.+... ...+-+|.|+||+|||.++..+|... +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45778888887777777766542 23478999999999999999999765 56788888
Q ss_pred ccchhh--hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecC
Q 003743 576 GPELLN--KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 576 ~~~l~~--~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
...+.. +|-|+.|+.++.+++......+.||||||+|.+.+...... + .-.+.|-|.-.| ..+.+-+||+|.
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaL----ARGeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPAL----ARGELRCIGATT 307 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHH----hcCCeEEEEecc
Confidence 888764 69999999999999999988899999999999987644322 1 222333333222 233355555555
Q ss_pred CCCc-----cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC
Q 003743 654 RPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA 696 (799)
Q Consensus 654 ~~~~-----ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 696 (799)
.-+. -|+||-| ||. .|.+..|+.++-..||+-....+...
T Consensus 308 ~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~h 352 (786)
T COG0542 308 LDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAH 352 (786)
T ss_pred HHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4332 6999999 995 56899999999999998876665443
No 283
>PHA02244 ATPase-like protein
Probab=99.18 E-value=5.2e-10 Score=120.45 Aligned_cols=128 Identities=25% Similarity=0.278 Sum_probs=82.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh---hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK---YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 619 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~---~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~ 619 (799)
+.++||+||||||||++|+++|..++.+|+.++...-... +++....-...-|-.|. ....+|+|||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p--- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP--- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCH---
Confidence 3479999999999999999999999999999985310001 11111110111122222 2345999999998743
Q ss_pred CCCCchhhHHHHHHHhhccC---------ccccCcEEEEEecCCC-----------CccChhhcCCCCcceeeecCCCCH
Q 003743 620 HDNTGVTDRVVNQFLTELDG---------VEVLTGVFVFAATSRP-----------DLLDAALLRPGRLDRLLFCDFPSP 679 (799)
Q Consensus 620 ~~~~~~~~r~~~~ll~~ld~---------~~~~~~vlvi~ttn~~-----------~~ld~al~r~gRf~~~i~~~~p~~ 679 (799)
.++..|...++. +....++-+|+|+|.+ ..+++++++ ||- .++|++|+.
T Consensus 195 --------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 195 --------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred --------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 334444444431 1123567899999974 348999999 995 689999984
Q ss_pred HHHHHHH
Q 003743 680 RERLDIL 686 (799)
Q Consensus 680 ~~r~~Il 686 (799)
.+. .|.
T Consensus 264 ~E~-~i~ 269 (383)
T PHA02244 264 IEH-LIS 269 (383)
T ss_pred HHH-HHh
Confidence 433 444
No 284
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.5e-09 Score=119.54 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=122.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-------------
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------- 570 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------------- 570 (799)
.+..+.+|+|++.+++.|...+... +.+..+||+||+|+||+++|.++|+.+-..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4578899999999999998877642 223469999999999999999999866210
Q ss_pred ---------------------EEEEecc--chhhhh-hcccHHHHHHHHHHh----HhcCCeEEEEcccccccCCCCCCC
Q 003743 571 ---------------------FISVKGP--ELLNKY-IGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN 622 (799)
Q Consensus 571 ---------------------~i~i~~~--~l~~~~-~g~se~~i~~~f~~a----~~~~p~ILfiDEid~l~~~r~~~~ 622 (799)
++.+... +-..+. ..-.-+.++++.+.+ ..+.|.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 1111110 000000 000123455555543 2356789999999998
Q ss_pred CchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHH
Q 003743 623 TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLE 702 (799)
Q Consensus 623 ~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~ 702 (799)
.....+.|++.++ +....+++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+....
T Consensus 154 ---~~~aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 154 ---NANAANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ---CHHHHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 3567889999987 444556677789999999999988 55 57899999999999888765321 1222235
Q ss_pred HHHHHCCCCcHHHHHHHH
Q 003743 703 AIAHMTEGFSGADLQALL 720 (799)
Q Consensus 703 ~la~~~~g~sg~di~~~~ 720 (799)
.++..+.|-. +....++
T Consensus 223 ~l~~~s~Gsp-~~Al~ll 239 (365)
T PRK07471 223 ALAALAEGSV-GRALRLA 239 (365)
T ss_pred HHHHHcCCCH-HHHHHHh
Confidence 6777777543 3333344
No 285
>PRK04132 replication factor C small subunit; Provisional
Probab=99.17 E-value=4.5e-10 Score=133.63 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=117.4
Q ss_pred CCCceeeec--CCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhc------CCeEEEE
Q 003743 542 LRSNVLLYG--PPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAA------APCLLFF 608 (799)
Q Consensus 542 ~~~~vLL~G--ppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~------~p~ILfi 608 (799)
|+-+-+..| |++.||||+|+++|+++ +.+++++|+++..+ -..++++.+.+... .+.|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 445677789 99999999999999987 56899999998532 23566666554322 2369999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHH
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 688 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~ 688 (799)
||+|.|. ...++.|++.|+ +....+.+|.+||.++.+.+++++ |+ ..+.|++|+.++...+++.
T Consensus 637 DEaD~Lt-----------~~AQnALLk~lE--ep~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALT-----------QDAQQALRRTME--MFSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCC-----------HHHHHHHHHHhh--CCCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 9999993 457889999997 345667888899999999999998 64 6789999999999999988
Q ss_pred HHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 003743 689 ISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLS 721 (799)
Q Consensus 689 ~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~ 721 (799)
.+...++. ++..+..++..++ +|++.+++
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~----GDlR~AIn 730 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAE----GDMRRAIN 730 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcC----CCHHHHHH
Confidence 88765543 3445677777766 45555544
No 286
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.16 E-value=1.7e-09 Score=107.64 Aligned_cols=195 Identities=22% Similarity=0.282 Sum_probs=135.7
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEe
Q 003743 499 TSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVK 575 (799)
Q Consensus 499 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~ 575 (799)
.++......+.++.|.+.+++.|.+-.... .. | .+..+|||+|..||||++++||+-.++ +..+|+|+
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F-------~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQF-------AE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHH-------Hc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 344555678899999999999987654422 11 1 345689999999999999999999877 67899999
Q ss_pred ccchhhhhhcccHHHHHHHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--ccCcEEEEEec
Q 003743 576 GPELLNKYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLTGVFVFAAT 652 (799)
Q Consensus 576 ~~~l~~~~~g~se~~i~~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~~~~vlvi~tt 652 (799)
..++.. +-.+++..+. ..+-|||+|++- ....+..+..|-..|+|-- ...+|+|.+|+
T Consensus 121 k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS----------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 121 KEDLAT---------LPDLVELLRARPEKFILFCDDLS----------FEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred HHHHhh---------HHHHHHHHhcCCceEEEEecCCC----------CCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 988743 4445554443 334599999862 2224556667777777643 45689999999
Q ss_pred CCCCccChhhcC--------------------CCCcceeeecCCCCHHHHHHHHHHHHccCCCCCc---ccHHHHH--HH
Q 003743 653 SRPDLLDAALLR--------------------PGRLDRLLFCDFPSPRERLDILKVISRKLPLADD---VDLEAIA--HM 707 (799)
Q Consensus 653 n~~~~ld~al~r--------------------~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~---~~~~~la--~~ 707 (799)
|+-..|...+.. ..||...+.|++++.++...|+..+++..+++-. .+.+++. ..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 987665432221 2499999999999999999999999998887632 2223332 23
Q ss_pred CCCCcHHHHHHHHH
Q 003743 708 TEGFSGADLQALLS 721 (799)
Q Consensus 708 ~~g~sg~di~~~~~ 721 (799)
..|=||+-..+.++
T Consensus 262 rg~RSGR~A~QF~~ 275 (287)
T COG2607 262 RGGRSGRVAWQFIR 275 (287)
T ss_pred cCCCccHhHHHHHH
Confidence 34556666555544
No 287
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.16 E-value=2.4e-10 Score=123.69 Aligned_cols=170 Identities=17% Similarity=0.221 Sum_probs=101.5
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce-ee--EEEE
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VA--HIVF 291 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-~~--~~~~ 291 (799)
+.+|..++|.+.++..+.-. .+. +...|+||+||||||||++++++++.+...... .. .+..
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~---~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLT---AID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHH---Hhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 34688889988776654431 111 123689999999999999999999998421000 00 0000
Q ss_pred E----ec------------------------ccccccchhhHHHHHHH---HHHH--HHhcCCcEEEEccccccccCCCC
Q 003743 292 V----CC------------------------SRLSLEKGPIIRQALSN---FISE--ALDHAPSIVIFDNLDSIISSSSD 338 (799)
Q Consensus 292 v----~~------------------------s~l~~~~~~~~~~~l~~---~~~~--a~~~~p~IL~IDEiD~l~~~~~~ 338 (799)
+ ++ ..+.|.. .+...+.. .+.. ......++|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~---- 142 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGAL--DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED---- 142 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecch--hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH----
Confidence 0 00 0011100 00000000 0100 0112346999999999852
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCCCC-ccchhhhccCceeEEEeccCCCH-HHHH
Q 003743 339 PEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPAPAA-SERK 412 (799)
Q Consensus 339 ~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~~-~ld~aL~r~gRf~~~i~~~~p~~-~er~ 412 (799)
.+...|++.|+... ..+.......++++++|+|..+ .+++++.. ||...+.+++|.. +++.
T Consensus 143 -----------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~ 209 (334)
T PRK13407 143 -----------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRV 209 (334)
T ss_pred -----------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHH
Confidence 56777888776532 1111111234689999999755 58999999 9999999998887 8889
Q ss_pred HHHHHH
Q 003743 413 AILEHE 418 (799)
Q Consensus 413 ~Il~~~ 418 (799)
+|+...
T Consensus 210 ~il~~~ 215 (334)
T PRK13407 210 EVIRRR 215 (334)
T ss_pred HHHHHh
Confidence 998864
No 288
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.15 E-value=5.2e-10 Score=106.24 Aligned_cols=129 Identities=22% Similarity=0.374 Sum_probs=80.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHH---HHHHHHHHHhcCCcEEEEcccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA---LSNFISEALDHAPSIVIFDNLD 330 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~---l~~~~~~a~~~~p~IL~IDEiD 330 (799)
.+++++++||||||||++++.+++.+.... .+++++++.............. ............+.+|+|||++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPG---APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChh
Confidence 456899999999999999999999984211 6677788776554332211111 1111222333567899999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC--ccchhhhccCceeEEEeccC
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLPA 405 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~--~ld~aL~r~gRf~~~i~~~~ 405 (799)
.+.. .....+...+....... .....+.+|+++|... .+++.+.+ |++.++.+++
T Consensus 95 ~~~~---------------~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 95 SLSR---------------GAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred hhhH---------------HHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 8731 22233444444332110 0012478888888876 67788888 9887777763
No 289
>PHA02244 ATPase-like protein
Probab=99.15 E-value=5.5e-10 Score=120.30 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=81.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc----ccccc--chhhHHHHHHHHHHHHHhcCCcEEEEcc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLE--KGPIIRQALSNFISEALDHAPSIVIFDN 328 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s----~l~~~--~~~~~~~~l~~~~~~a~~~~p~IL~IDE 328 (799)
+.++||+||||||||++|+++|..++ .+++.++.. .+.+. ..+.+. ..-+..+. ..+++|+|||
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~d~~~L~G~i~~~g~~~---dgpLl~A~-~~GgvLiLDE 188 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIMDEFELKGFIDANGKFH---ETPFYEAF-KKGGLFFIDE 188 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecChHHHhhccccccccccc---chHHHHHh-hcCCEEEEeC
Confidence 34599999999999999999999988 566666532 11110 001110 01111221 4567999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccCCccCCCCEEEEEecCCC-----------CccchhhhccC
Q 003743 329 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKSSCGIGPIAFVASAQSL-----------EKIPQSLTSSG 395 (799)
Q Consensus 329 iD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~--~~~~~~~~~~~v~vI~ttn~~-----------~~ld~aL~r~g 395 (799)
++.+.+ .....|...++... ........+.++.+|+|+|.+ ..+++++++
T Consensus 189 Id~a~p---------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD-- 251 (383)
T PHA02244 189 IDASIP---------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD-- 251 (383)
T ss_pred cCcCCH---------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--
Confidence 998852 34445555554211 111112223568999999973 567999999
Q ss_pred ceeEEEeccCCCHHHH
Q 003743 396 RFDFHVQLPAPAASER 411 (799)
Q Consensus 396 Rf~~~i~~~~p~~~er 411 (799)
||. .|+++.|+.-|.
T Consensus 252 RFv-~I~~dyp~~~E~ 266 (383)
T PHA02244 252 RFA-PIEFDYDEKIEH 266 (383)
T ss_pred hcE-EeeCCCCcHHHH
Confidence 997 799999984343
No 290
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.15 E-value=7.7e-10 Score=120.09 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=100.4
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC-------CeEE--------
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFI-------- 572 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~-------~~~i-------- 572 (799)
|..|+|+++++..|.-....| ...+++|.|+||+|||+++++++..+. .++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 678999999998886555433 235899999999999999999998762 2111
Q ss_pred -EEecc-------------------chh-----hhhhcccH--HH--------HHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 573 -SVKGP-------------------ELL-----NKYIGASE--QA--------VRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 573 -~i~~~-------------------~l~-----~~~~g~se--~~--------i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
..+|. ++- +..+|... .. -..++.+|.. .+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~---GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR---GILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC---CEEEecChHhC---
Confidence 00000 100 01122110 00 0112222222 49999999998
Q ss_pred CCCCCCchhhHHHHHHHhhccCc----c-------ccCcEEEEEecCCCC-ccChhhcCCCCcceeeecCCCCH-HHHHH
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGV----E-------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPSP-RERLD 684 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~----~-------~~~~vlvi~ttn~~~-~ld~al~r~gRf~~~i~~~~p~~-~~r~~ 684 (799)
...+++.|+..|+.- . ...++++++|+|..+ .+.++++. ||...+.+++|+. +++.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 345777777777431 1 123578888887554 48999999 9999999998875 88999
Q ss_pred HHHHHH
Q 003743 685 ILKVIS 690 (799)
Q Consensus 685 Il~~~~ 690 (799)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998743
No 291
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.15 E-value=7e-10 Score=120.37 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=99.7
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC-------Cc---ee
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH-------KD---LV 286 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~-------~~---~~ 286 (799)
+|..|+|.+..+..+.- ..+. |...+++|.|+||+|||++++++++.+... .. ..
T Consensus 2 pf~~ivgq~~~~~al~~---~~~~------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLL---NVID------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSD 66 (337)
T ss_pred CccccccHHHHHHHHHH---HhcC------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCC
Confidence 57788888877655432 2222 335689999999999999999999988310 00 00
Q ss_pred eEEEEEecc-------------------cccc-----cchhh--HHHHHHH---HHH--HHHhcCCcEEEEccccccccC
Q 003743 287 AHIVFVCCS-------------------RLSL-----EKGPI--IRQALSN---FIS--EALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 287 ~~~~~v~~s-------------------~l~~-----~~~~~--~~~~l~~---~~~--~a~~~~p~IL~IDEiD~l~~~ 335 (799)
..++..+|. ++.. ...|. +...+.. .+. ......+++|||||++.+.+
T Consensus 67 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 67 PEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED- 145 (337)
T ss_pred ccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH-
Confidence 000000111 0110 00010 0111000 000 00113457999999999852
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCCCC-ccchhhhccCceeEEEeccCCCH-H
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPAPAA-S 409 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~~-~ld~aL~r~gRf~~~i~~~~p~~-~ 409 (799)
.+...|++.|+.-. ..+.......++++|+|+|..+ .++++|.. ||..++.++.|.. +
T Consensus 146 --------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 146 --------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred --------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 56677777776421 1111111223688888888755 68999999 9999999999986 8
Q ss_pred HHHHHHHH
Q 003743 410 ERKAILEH 417 (799)
Q Consensus 410 er~~Il~~ 417 (799)
++.+|++.
T Consensus 210 er~eIL~~ 217 (337)
T TIGR02030 210 LRVEIVER 217 (337)
T ss_pred HHHHHHHh
Confidence 88888876
No 292
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.15 E-value=5.4e-10 Score=121.13 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=104.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC-------CeEEEEec--
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISVKG-- 576 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~-------~~~i~i~~-- 576 (799)
..|.+++|++++|..|......| ..+++||.|++|||||++|++++..+. .+|. ..+
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 56889999999999998776643 224899999999999999999987662 1221 000
Q ss_pred -----cchhhh-------------------hhcccHHH------HHHHHHHhH---------hcCCeEEEEcccccccCC
Q 003743 577 -----PELLNK-------------------YIGASEQA------VRDIFSKAT---------AAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 577 -----~~l~~~-------------------~~g~se~~------i~~~f~~a~---------~~~p~ILfiDEid~l~~~ 617 (799)
.++.+. -.|.++.. +...|.... .....+||+||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 000000 01223322 111222110 0112499999999984
Q ss_pred CCCCCCchhhHHHHHHHhhccCc----c-------ccCcEEEEEecCCCC-ccChhhcCCCCcceeeecCCCC-HHHHHH
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGV----E-------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPS-PRERLD 684 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~----~-------~~~~vlvi~ttn~~~-~ld~al~r~gRf~~~i~~~~p~-~~~r~~ 684 (799)
..+++.|+..|+.- . ...++++++|.|..+ .+.+++.. ||...+.+..|+ .+.+.+
T Consensus 158 ---------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 158 ---------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred ---------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHH
Confidence 45677777776431 1 124678888777655 48999999 999999999997 699999
Q ss_pred HHHHHH
Q 003743 685 ILKVIS 690 (799)
Q Consensus 685 Il~~~~ 690 (799)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 998754
No 293
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.14 E-value=5.7e-10 Score=118.85 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=65.6
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC------------CCccc
Q 003743 321 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKIP 388 (799)
Q Consensus 321 p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~------------~~~ld 388 (799)
|+||||||+|.|- ..-+.+|...++.-.+ -++|++||+ |.-+|
T Consensus 279 pGVLFIDEvHmLD---------------iEcFsfLnralEs~~s----------PiiIlATNRg~~~irGt~~~sphGiP 333 (398)
T PF06068_consen 279 PGVLFIDEVHMLD---------------IECFSFLNRALESELS----------PIIILATNRGITKIRGTDIISPHGIP 333 (398)
T ss_dssp E-EEEEESGGGSB---------------HHHHHHHHHHHTSTT------------EEEEEES-SEEE-BTTS-EEETT--
T ss_pred cceEEecchhhcc---------------HHHHHHHHHHhcCCCC----------cEEEEecCceeeeccCccCcCCCCCC
Confidence 7899999999984 2678888888775332 356666674 44578
Q ss_pred hhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCCh
Q 003743 389 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 443 (799)
Q Consensus 389 ~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~ 443 (799)
..|+. |+- .|...+++.+|..+|++..++..++.+++++++.|.......+-
T Consensus 334 ~DlLD--Rll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SL 385 (398)
T PF06068_consen 334 LDLLD--RLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSL 385 (398)
T ss_dssp HHHHT--TEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-H
T ss_pred cchHh--hcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccH
Confidence 88998 875 88999999999999999999999999999999998877654443
No 294
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.2e-09 Score=118.79 Aligned_cols=171 Identities=17% Similarity=0.266 Sum_probs=117.7
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC--------eEEEEeccc
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------RFISVKGPE 578 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~--------~~i~i~~~~ 578 (799)
.|+++.|++.+++.+...+... +.+..+||+||+|+|||++|+++|+.+-. .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 3788999999999988876531 22346799999999999999999997632 233333211
Q ss_pred hhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC
Q 003743 579 LLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 654 (799)
Q Consensus 579 l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~ 654 (799)
+. .-+-..++++.+.+. .+...|++||++|.+ .....|.|++.|+ ++.+++++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LE--epp~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIE--EPPKGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCCCeEEEEEeCC
Confidence 11 112345666665442 244569999999998 3567889999998 44555666666788
Q ss_pred CCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCc
Q 003743 655 PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFS 712 (799)
Q Consensus 655 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~s 712 (799)
++.+-|.+++ |. ..+.|++|+.++....++..... + .+.+.+.++..+.|-.
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIP 184 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCH
Confidence 9999999998 55 58899999999988888765432 1 2233556666666533
No 295
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=3.4e-10 Score=123.57 Aligned_cols=211 Identities=19% Similarity=0.218 Sum_probs=138.0
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...+..|||....+.++++.+..+... ...|||.|.+||||..+|++|.+...... .+++.+||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-------------d~tVLi~GETGtGKElvAraIH~~S~R~~---kPfV~~NC 282 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-------------DSTVLIRGETGTGKELVARAIHQLSPRRD---KPFVKLNC 282 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-------------CCeEEEecCCCccHHHHHHHHHhhCcccC---CCceeeec
Confidence 456778999999999999998777653 34599999999999999999998876433 78999999
Q ss_pred cccc---------ccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 003743 295 SRLS---------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 363 (799)
Q Consensus 295 s~l~---------~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~-- 363 (799)
+.+. |...|.+.+++..-.........+-||||||-.+.. .+...|+..+.+-.
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL---------------~lQaKLLRvLQegEie 347 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL---------------ALQAKLLRVLQEGEIE 347 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH---------------HHHHHHHHHHhhccee
Confidence 6554 444444444333221111223567899999977752 45555555554321
Q ss_pred cccCCccCCCCEEEEEecCCCCccchhhhccC--------ceeEEEeccCCCHHHHH----HHHHHHhhh-------ccc
Q 003743 364 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG--------RFDFHVQLPAPAASERK----AILEHEIQR-------RSL 424 (799)
Q Consensus 364 ~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~g--------Rf~~~i~~~~p~~~er~----~Il~~~l~~-------~~~ 424 (799)
.-+.+..-.-+|.||++||+ ++..+.+ .| |+. ++.+..|...||. -+...|+++ ..+
T Consensus 348 RvG~~r~ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l 423 (550)
T COG3604 348 RVGGDRTIKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAIL 423 (550)
T ss_pred ecCCCceeEEEEEEEeccch--hHHHHHH-cCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccc
Confidence 11111111236899999997 2222222 22 333 4455555544443 333444332 245
Q ss_pred CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhccc
Q 003743 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRY 461 (799)
Q Consensus 425 ~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~ 461 (799)
.++.++++.+.++..--+.++|++++.+|+..| .+.
T Consensus 424 ~ls~~Al~~L~~y~wPGNVRELen~veRavlla-~~~ 459 (550)
T COG3604 424 SLSAEALELLSSYEWPGNVRELENVVERAVLLA-GRL 459 (550)
T ss_pred ccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh-ccc
Confidence 689999999999988889999999999999877 443
No 296
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=7.5e-10 Score=128.67 Aligned_cols=232 Identities=12% Similarity=0.158 Sum_probs=137.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEE-Eeccc--
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS-VKGPE-- 578 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~-i~~~~-- 578 (799)
++.+..++++.|.++..+.+..++.... .+..+..-++|+||||||||++++++|..++..+++ +++..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 4556789999999998888887765321 112233458999999999999999999998765433 22110
Q ss_pred -hhhhh------------hcccHHHHHHHHHHhHh----------cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHh
Q 003743 579 -LLNKY------------IGASEQAVRDIFSKATA----------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 635 (799)
Q Consensus 579 -l~~~~------------~g~se~~i~~~f~~a~~----------~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~ 635 (799)
....| .......+..++..+.. ....||||||++.++.. ..+.+..++.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr 220 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILR 220 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHH
Confidence 00000 01123445666666542 34579999999987643 2234455554
Q ss_pred -hccCccccCcEEEEEecCCCC------c--------cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCC--CCC-
Q 003743 636 -ELDGVEVLTGVFVFAATSRPD------L--------LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP--LAD- 697 (799)
Q Consensus 636 -~ld~~~~~~~vlvi~ttn~~~------~--------ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~--~~~- 697 (799)
... +.....+|+++|..|. . +.+++++..|. .+|.|++++.....+.|+.++.... ...
T Consensus 221 ~~~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 221 WKYV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred HHhh--cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 221 2222234444443332 0 33677753344 4789999999997777777765431 111
Q ss_pred -----cccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC
Q 003743 698 -----DVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 698 -----~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~ 760 (799)
...+..|+. .++|||+.+++.-...+.+. ...+.......++..|+..+..+..+
T Consensus 298 ~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~~----g~~a~~~~~~~vs~~hv~~a~~k~~~ 357 (637)
T TIGR00602 298 IKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSKS----GSLPIKKRMSTKSDAHASKSKIKGKH 357 (637)
T ss_pred cccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhcC----CccccccccccccHHHhhhccccCCC
Confidence 123444444 45689999887555544322 22223345567888888877665544
No 297
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.12 E-value=3.9e-10 Score=131.63 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=134.7
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
..++.++|....+.++++.+..+.. ...+|||+|++|||||++|++|....... ..+++.+||.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~-------------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~ 256 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR-------------SNSTVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCA 256 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC-------------cCCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecC
Confidence 4678999999999999998877653 24459999999999999999999876422 2689999998
Q ss_pred cccccchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 003743 296 RLSLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 360 (799)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~~---------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld 360 (799)
.+.... ... .+|.. .....+++||||||+.+.. .....|+..++
T Consensus 257 ~~~~~~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~---------------~~Q~~Ll~~l~ 315 (534)
T TIGR01817 257 ALSETL---LES---ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP---------------AFQAKLLRVLQ 315 (534)
T ss_pred CCCHHH---HHH---HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH---------------HHHHHHHHHHh
Confidence 874321 111 11110 1123567999999999962 45566666665
Q ss_pred Hhc--cccCCccCCCCEEEEEecCCC-C------ccchhhhccCcee-EEEeccCCC--HHHHHHHHHHHhhhc------
Q 003743 361 EYG--EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR------ 422 (799)
Q Consensus 361 ~~~--~~~~~~~~~~~v~vI~ttn~~-~------~ld~aL~r~gRf~-~~i~~~~p~--~~er~~Il~~~l~~~------ 422 (799)
... ..........++.+|++|+.. + .+.+.|.. |+. ..|.+|+.. .++...+++.++...
T Consensus 316 ~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~ 393 (534)
T TIGR01817 316 EGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR 393 (534)
T ss_pred cCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCC
Confidence 422 101000111246788887652 1 23344444 443 356777776 356667777766532
Q ss_pred ccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 423 SLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 423 ~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
...++++++..|..+....+.++|++++++++..+
T Consensus 394 ~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 394 PLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 25689999999999887779999999999887543
No 298
>PRK04132 replication factor C small subunit; Provisional
Probab=99.12 E-value=9e-10 Score=131.12 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=123.6
Q ss_pred CceEEEEC--CCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhc--CCcEEEEcccc
Q 003743 255 PGHILIHG--PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH--APSIVIFDNLD 330 (799)
Q Consensus 255 ~~~vLL~G--ppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~--~p~IL~IDEiD 330 (799)
+-+.+..| |++.||||+|+++|+.+... ....+++.+|+++..+. ..++..+.......... ...|++|||+|
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgi--d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccH--HHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 34577889 99999999999999998421 12257899999985432 23333333322211111 23599999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHH
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASE 410 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~e 410 (799)
.+.. ...+.|+..|+.... .+.+|++||++..+.+++++ |+. .+.|++|+.++
T Consensus 641 ~Lt~---------------~AQnALLk~lEep~~---------~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~ 693 (846)
T PRK04132 641 ALTQ---------------DAQQALRRTMEMFSS---------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDED 693 (846)
T ss_pred cCCH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHH
Confidence 9962 346677777776543 37899999999999999999 865 89999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 411 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 411 r~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
....+...+...++.++++.+..++..++|- .+..-++++.+
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GD-lR~AIn~Lq~~ 735 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEGD-MRRAINILQAA 735 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 9999999999888999999999999998883 44444444443
No 299
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.12 E-value=1.2e-10 Score=114.53 Aligned_cols=114 Identities=23% Similarity=0.308 Sum_probs=78.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCC----eEEEEeccchhhhhhcccHHHHHHHHHHh----HhcCCeEEEEccccc
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSL----RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDS 613 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~----~~i~i~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~ILfiDEid~ 613 (799)
|..++||+||+|||||.+|+++|..+.. +++.++++++... +..+..+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4458999999999999999999999996 9999999998651 11112222222211 111113999999999
Q ss_pred ccCCCCCCCCchhhHHHHHHHhhccCcc---------ccCcEEEEEecCCCCc
Q 003743 614 IAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL 657 (799)
Q Consensus 614 l~~~r~~~~~~~~~r~~~~ll~~ld~~~---------~~~~vlvi~ttn~~~~ 657 (799)
+.+..+....-....+++.|++.|++-. ..++++||+|+|--..
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9876333333344578899999886532 2357999999997655
No 300
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.12 E-value=8e-10 Score=120.80 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=103.1
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC---------------------
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--------------------- 568 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~--------------------- 568 (799)
++.+.+.....+........ +.+..+||+||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 34555556666655544211 1111499999999999999999999886
Q ss_pred ---CeEEEEeccchhhhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc
Q 003743 569 ---LRFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE 641 (799)
Q Consensus 569 ---~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~ 641 (799)
-.++.+++++....- .....++++-+.... +...|++|||+|.+. ..+.+.+++.|+ +
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-----------~~A~nallk~lE--e 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-----------EDAANALLKTLE--E 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhc--c
Confidence 478888888754321 123445555544422 345799999999994 467889999987 5
Q ss_pred ccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHH
Q 003743 642 VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILK 687 (799)
Q Consensus 642 ~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~ 687 (799)
+..+..+|.+||.++.+-+.+++ |. ..+.|++|+........+
T Consensus 136 p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 56677788889999999999998 44 567887766555544333
No 301
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.12 E-value=1.3e-09 Score=118.22 Aligned_cols=169 Identities=17% Similarity=0.219 Sum_probs=104.6
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee-eEEE---
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-AHIV--- 290 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~-~~~~--- 290 (799)
.-+|..|+|.+..+..++..+ +. |...++||.||+|||||++++++++.+....... .++.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~---~~------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNV---ID------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhc---cC------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 347899999998777655422 21 2346899999999999999999999886322110 0110
Q ss_pred -------------------------EEecccccccchhhHHHH------HHHHHHHH---------HhcCCcEEEEcccc
Q 003743 291 -------------------------FVCCSRLSLEKGPIIRQA------LSNFISEA---------LDHAPSIVIFDNLD 330 (799)
Q Consensus 291 -------------------------~v~~s~l~~~~~~~~~~~------l~~~~~~a---------~~~~p~IL~IDEiD 330 (799)
.+.+-.+.. +.+.+. +...+... .....++|||||++
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~---~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEIn 154 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPL---GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVN 154 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCC---CCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChH
Confidence 000000000 111111 11111111 11235799999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCCccCCCCEEEEEecCCCC-ccchhhhccCceeEEEeccC
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPA 405 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~----~~~~~~~~~~v~vI~ttn~~~-~ld~aL~r~gRf~~~i~~~~ 405 (799)
.+.+ .+...|++.|+.... .+.......++++|+|.|..+ .++++|.. ||..++.+..
T Consensus 155 rL~~---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~ 217 (350)
T CHL00081 155 LLDD---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRT 217 (350)
T ss_pred hCCH---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCC
Confidence 9863 566777777765211 111111233688888888765 68999999 9999999999
Q ss_pred CC-HHHHHHHHHHH
Q 003743 406 PA-ASERKAILEHE 418 (799)
Q Consensus 406 p~-~~er~~Il~~~ 418 (799)
|+ .+++.+|+++.
T Consensus 218 ~~~~~~e~~il~~~ 231 (350)
T CHL00081 218 VKDPELRVKIVEQR 231 (350)
T ss_pred CCChHHHHHHHHhh
Confidence 98 58898988864
No 302
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=8.2e-10 Score=122.07 Aligned_cols=125 Identities=19% Similarity=0.361 Sum_probs=80.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC-------eEEEEecc----chhhhh----hccc--HHHHHHHHHHhHh--cCC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKGP----ELLNKY----IGAS--EQAVRDIFSKATA--AAP 603 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~-------~~i~i~~~----~l~~~~----~g~s--e~~i~~~f~~a~~--~~p 603 (799)
..+++|+||||||||++|+.+|..+.. .++.+..+ +++..+ +|.. ...+.++++.|+. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 358999999999999999999988742 23333322 222222 1111 1134556666754 357
Q ss_pred eEEEEcccccccCCCCCCCCchhhHHHHHHHhhcc--------------------CccccCcEEEEEecCCCC----ccC
Q 003743 604 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD--------------------GVEVLTGVFVFAATSRPD----LLD 659 (799)
Q Consensus 604 ~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld--------------------~~~~~~~vlvi~ttn~~~----~ld 659 (799)
+|||||||++.... ++..++++.|+ .+....++.||||+|..+ .+|
T Consensus 274 ~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 274 YVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred cEEEEehhhccCHH----------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 99999999987533 33444444443 123345799999999988 599
Q ss_pred hhhcCCCCcceeeecCC-CCHH
Q 003743 660 AALLRPGRLDRLLFCDF-PSPR 680 (799)
Q Consensus 660 ~al~r~gRf~~~i~~~~-p~~~ 680 (799)
.|++| ||.. |.+.+ ++..
T Consensus 344 ~AlrR--RF~f-i~i~p~~~~~ 362 (459)
T PRK11331 344 YALRR--RFSF-IDIEPGFDTP 362 (459)
T ss_pred HHHHh--hhhe-EEecCCCChH
Confidence 99999 9954 44544 4443
No 303
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.10 E-value=5.4e-10 Score=122.37 Aligned_cols=134 Identities=30% Similarity=0.409 Sum_probs=91.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh--hhcccHHHHH----HHHHHhHh--cCC--eEEEEcccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQAVR----DIFSKATA--AAP--CLLFFDEFD 612 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~--~~g~se~~i~----~~f~~a~~--~~p--~ILfiDEid 612 (799)
.+++||.||||||||++|+.+|..++.+|+.++|..-+.. .+|...-... ..|....+ ... +|+|+|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3589999999999999999999999999999998754321 1222211111 00100000 000 399999999
Q ss_pred cccCCCCCCCCchhhHHHHHHHhhccC----------ccccCcEEEEEecC-----CCCccChhhcCCCCcceeeecCCC
Q 003743 613 SIAPKRGHDNTGVTDRVVNQFLTELDG----------VEVLTGVFVFAATS-----RPDLLDAALLRPGRLDRLLFCDFP 677 (799)
Q Consensus 613 ~l~~~r~~~~~~~~~r~~~~ll~~ld~----------~~~~~~vlvi~ttn-----~~~~ld~al~r~gRf~~~i~~~~p 677 (799)
+.. ..+.+.|+..|+. .....+++|++|+| ....+++|+++ ||...+++++|
T Consensus 123 ra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp 189 (329)
T COG0714 123 RAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYP 189 (329)
T ss_pred cCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCC
Confidence 874 4577778877754 22346788998889 44458999999 99888999999
Q ss_pred -CHHHHHHHHHHH
Q 003743 678 -SPRERLDILKVI 689 (799)
Q Consensus 678 -~~~~r~~Il~~~ 689 (799)
+..+...++...
T Consensus 190 ~~~~e~~~i~~~~ 202 (329)
T COG0714 190 DSEEEERIILARV 202 (329)
T ss_pred CchHHHHHHHHhC
Confidence 455454444443
No 304
>PRK09087 hypothetical protein; Validated
Probab=99.10 E-value=8.7e-10 Score=113.69 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=105.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG 624 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~ 624 (799)
.++|+||+|+|||+++++++...+..++. ..++... ++..... .+|+|||++.+...
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------- 102 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------- 102 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcchH-----------HHHhhhc---CeEEEECCCCCCCC-------
Confidence 58999999999999999999887665433 3222211 1111111 38889999976211
Q ss_pred hhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccCCCC-Cc
Q 003743 625 VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DD 698 (799)
Q Consensus 625 ~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~ 698 (799)
. ..|...+..+...+..+|++++..|.. ..+.+++ ||. .++.+.+|+.++|.+|++..+...++. ++
T Consensus 103 --~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 --E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred --H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1 123333333334455677766666654 3688888 775 788999999999999999988766543 33
Q ss_pred ccHHHHHHHCCCCcHHHHHHHHH---HHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 699 VDLEAIAHMTEGFSGADLQALLS---DAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 699 ~~~~~la~~~~g~sg~di~~~~~---~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
..++.|+.... ++++.+.. .....+.. ....||...+++++..+
T Consensus 176 ev~~~La~~~~----r~~~~l~~~l~~L~~~~~~------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 176 HVVYYLVSRME----RSLFAAQTIVDRLDRLALE------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH------------hCCCCCHHHHHHHHHhh
Confidence 33666776665 55555433 22111111 12358898988888654
No 305
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.10 E-value=7.1e-09 Score=110.24 Aligned_cols=196 Identities=20% Similarity=0.281 Sum_probs=114.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc------------cccccc----hhhHHHHHHHHHH-HHH
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------------RLSLEK----GPIIRQALSNFIS-EAL 317 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s------------~l~~~~----~~~~~~~l~~~~~-~a~ 317 (799)
+..++|+||+|+|||++++.+++.+........ ..+++. .+.... .......+...+. ...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~--~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAA--KLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEe--eeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999998863221111 111110 000000 0011112222222 223
Q ss_pred hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC--CCcc----chhh
Q 003743 318 DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKI----PQSL 391 (799)
Q Consensus 318 ~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~--~~~l----d~aL 391 (799)
...+.+|+|||+|.+.. .....+..+.+. .... ...+.++.+... .+.+ ...+
T Consensus 121 ~~~~~vliiDe~~~l~~---------------~~~~~l~~l~~~-~~~~-----~~~~~vvl~g~~~~~~~l~~~~~~~l 179 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTP---------------ELLEELRMLSNF-QTDN-----AKLLQIFLVGQPEFRETLQSPQLQQL 179 (269)
T ss_pred CCCCeEEEEECcccCCH---------------HHHHHHHHHhCc-ccCC-----CCeEEEEEcCCHHHHHHHcCchhHHH
Confidence 45677999999998741 112222222111 1100 012333333322 1122 1235
Q ss_pred hccCceeEEEeccCCCHHHHHHHHHHHhhhcc----cCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCc
Q 003743 392 TSSGRFDFHVQLPAPAASERKAILEHEIQRRS----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 467 (799)
Q Consensus 392 ~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~----~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~ 467 (799)
.+ |+...+.+++++.++..+++...+...+ ..++++.++.+.+.+.|. ++.+..++..+...|..+
T Consensus 180 ~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~------- 249 (269)
T TIGR03015 180 RQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE------- 249 (269)
T ss_pred Hh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc-------
Confidence 55 8888899999999999999998886543 468899999999999997 566999999988777654
Q ss_pred ccccccccceecccchhccc
Q 003743 468 FEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 468 ~~~~~~~~l~~edf~~al~~ 487 (799)
....++.+++..++..
T Consensus 250 ----~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 250 ----EKREIGGEEVREVIAE 265 (269)
T ss_pred ----CCCCCCHHHHHHHHHH
Confidence 2245666666655543
No 306
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.09 E-value=6.4e-10 Score=123.49 Aligned_cols=208 Identities=19% Similarity=0.211 Sum_probs=135.6
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
.....++|....+.++.+.+..+-.. .-+||++|++||||-.+|++|.+...... .+|+.+||.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s-------------~a~VLI~GESGtGKElvAr~IH~~S~R~~---~PFVavNca 201 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS-------------DASVLITGESGTGKELVARAIHQASPRAK---GPFIAVNCA 201 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCCcHHHHHHHHHhhCcccC---CCceeeecc
Confidence 45778899999999999988666542 34599999999999999999998876332 689999996
Q ss_pred ccc---------ccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--c
Q 003743 296 RLS---------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--E 364 (799)
Q Consensus 296 ~l~---------~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~--~ 364 (799)
.+. +...|.+.+..............+.||||||..+.. .++..|+..+.... .
T Consensus 202 Aip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl---------------~~Q~kLLRvLqe~~~~r 266 (464)
T COG2204 202 AIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL---------------ELQVKLLRVLQEREFER 266 (464)
T ss_pred cCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH---------------HHHHHHHHHHHcCeeEe
Confidence 654 333333333322211122224567999999988752 44555555555322 1
Q ss_pred ccCCccCCCCEEEEEecCCC-------CccchhhhccCceeEEEeccCCCHHHHH----HHHHHHhhh-------cccCC
Q 003743 365 KRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQR-------RSLEC 426 (799)
Q Consensus 365 ~~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~~~i~~~~p~~~er~----~Il~~~l~~-------~~~~~ 426 (799)
-+.+....-+|.||++||.. ..+-+.|.- |+. ++.+..|...||. -++++|+.+ ....+
T Consensus 267 vG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~ 343 (464)
T COG2204 267 VGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGF 343 (464)
T ss_pred cCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 11111122368899999872 122344444 554 5566666655544 455555542 23468
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
+++.+..+..+..--|.++|++++.+++.-+
T Consensus 344 s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 344 SPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 8999999998887778999999999987543
No 307
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.09 E-value=6.1e-10 Score=123.31 Aligned_cols=206 Identities=16% Similarity=0.183 Sum_probs=136.6
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 292 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v 292 (799)
..+.+|++|+|....+.++++.++..-. .+..|||+|.+||||..||+++.+..... ..+|+.+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~-------------tdstVLi~GESGTGKElfA~~IH~~S~R~---~~PFIai 302 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK-------------TDSTVLILGESGTGKELFARAIHNLSPRA---NGPFIAI 302 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC-------------CCCcEEEecCCCccHHHHHHHHHhcCccc---CCCeEEE
Confidence 3467899999999999988887765543 34569999999999999999999877633 3789999
Q ss_pred ecccc---------cccchhhHHHHHH----HHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 003743 293 CCSRL---------SLEKGPIIRQALS----NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 359 (799)
Q Consensus 293 ~~s~l---------~~~~~~~~~~~l~----~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~l 359 (799)
||+.+ +|...|.+.++.+ .+|+.| ..+-||||||..+.. .+...|+..+
T Consensus 303 NCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gGTLFLDEIgempl---------------~LQaKLLRVL 364 (560)
T COG3829 303 NCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELA---NGGTLFLDEIGEMPL---------------PLQAKLLRVL 364 (560)
T ss_pred ecccCCHHHHHHHHhCcCCccccccccCCCCcceeec---cCCeEEehhhccCCH---------------HHHHHHHHHH
Confidence 99554 4444444444333 133333 456899999988752 5666677766
Q ss_pred HHhc--cccCCccCCCCEEEEEecCCC-Cc------cchhhhccCceeEEEeccCCCHHHH----HHHHHHHhhh-----
Q 003743 360 DEYG--EKRKSSCGIGPIAFVASAQSL-EK------IPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQR----- 421 (799)
Q Consensus 360 d~~~--~~~~~~~~~~~v~vI~ttn~~-~~------ld~aL~r~gRf~~~i~~~~p~~~er----~~Il~~~l~~----- 421 (799)
.... .-+......-+|.||+|||.. .+ +-+.|-= |+. ++.+..|...|| ..+...++.+
T Consensus 365 QEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~ 441 (560)
T COG3829 365 QEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRY 441 (560)
T ss_pred hhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHc
Confidence 6432 111111223369999999972 11 1222222 443 455555555444 4455555442
Q ss_pred -ccc-CCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003743 422 -RSL-ECSDEILLDVASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 422 -~~~-~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 455 (799)
+.+ .++++++..+.++...-+.++|++++.+++.
T Consensus 442 ~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 442 GRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 223 3789999999988887899999999998874
No 308
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.09 E-value=1e-09 Score=127.11 Aligned_cols=207 Identities=14% Similarity=0.168 Sum_probs=130.1
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|++++|....+.+++++++.+.. ...+|||+|++||||+++|+++....... ..+++.+||
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~-------------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~---~~pfv~inc 263 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM-------------LDAPLLITGDTGTGKDLLAYACHLRSPRG---KKPFLALNC 263 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEecc
Confidence 45788999999999999988865543 23449999999999999999987765422 267899999
Q ss_pred ccccccchhh---------HHH---HHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 003743 295 SRLSLEKGPI---------IRQ---ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 362 (799)
Q Consensus 295 s~l~~~~~~~---------~~~---~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~ 362 (799)
+.+....... ... .-..+|.. ...+.||||||+.+.+ .+...|++++...
T Consensus 264 a~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~---------------~~Q~~Ll~~l~~~ 325 (520)
T PRK10820 264 ASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSP---------------RMQAKLLRFLNDG 325 (520)
T ss_pred ccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCH---------------HHHHHHHHHHhcC
Confidence 8875321100 000 00011222 3467899999999963 3445555555431
Q ss_pred c--cccCCccCCCCEEEEEecCCC-C------ccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhh----hcc---
Q 003743 363 G--EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQ----RRS--- 423 (799)
Q Consensus 363 ~--~~~~~~~~~~~v~vI~ttn~~-~------~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~----~~~--- 423 (799)
. ..........++.+|++|+.. . .+.+.|.. |+. ..|.+|+... +++..++..++. ..+
T Consensus 326 ~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~ 403 (520)
T PRK10820 326 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPR 403 (520)
T ss_pred CcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 111111112346788877653 2 23455555 654 4556666654 345455555443 332
Q ss_pred cCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 424 LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 424 ~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
..++++++..|..+....+.++|++++.+|+..+
T Consensus 404 ~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 404 PKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 3689999999998877778999999998887543
No 309
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.08 E-value=2.4e-09 Score=114.18 Aligned_cols=65 Identities=26% Similarity=0.434 Sum_probs=46.6
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC--CeEEEEeccchh
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELL 580 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~~l~ 580 (799)
.+.++|+.+++++.--.+... +.+.-..+++||.||||||||++|-++|+++| .||+.+++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 457899999998876655432 11222356899999999999999999999996 889999988864
No 310
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.08 E-value=1.6e-10 Score=110.05 Aligned_cols=115 Identities=21% Similarity=0.375 Sum_probs=71.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHH---H-------HHHHHHhcCCcEEEE
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALS---N-------FISEALDHAPSIVIF 326 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~---~-------~~~~a~~~~p~IL~I 326 (799)
+|||+||||||||++++.+|+.++ .++..++++...... .+..... . .+..+ ...+++++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~--dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEE--DLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHH--HHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccc--cceeeeeeccccccccccccccc-ccceeEEEE
Confidence 589999999999999999999997 777777775532111 0000000 0 00000 024679999
Q ss_pred ccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----cCCccCCC------CEEEEEecCCCC----ccchhhh
Q 003743 327 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RKSSCGIG------PIAFVASAQSLE----KIPQSLT 392 (799)
Q Consensus 327 DEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~----~~~~~~~~------~v~vI~ttn~~~----~ld~aL~ 392 (799)
||++...+ .++..|..+++...-. ........ .+.+|+|+|+.. .++++|+
T Consensus 72 DEin~a~~---------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 72 DEINRAPP---------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp SSCGG--H---------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred CCcccCCH---------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 99988742 6777777877754321 11111111 389999999988 8999999
Q ss_pred ccCce
Q 003743 393 SSGRF 397 (799)
Q Consensus 393 r~gRf 397 (799)
+ ||
T Consensus 137 ~--Rf 139 (139)
T PF07728_consen 137 D--RF 139 (139)
T ss_dssp T--T-
T ss_pred h--hC
Confidence 9 86
No 311
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3e-09 Score=109.77 Aligned_cols=199 Identities=22% Similarity=0.287 Sum_probs=125.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc--cchhhHHHHHHHHHHHH----HhcCCcEEEEcc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL--EKGPIIRQALSNFISEA----LDHAPSIVIFDN 328 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~--~~~~~~~~~l~~~~~~a----~~~~p~IL~IDE 328 (799)
..+|||.||+|||||.||+.||+.++ .+|..-++..+.. ..+...+..+..++..+ ...+.+|++|||
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDE 170 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDE 170 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEec
Confidence 35699999999999999999999999 7888778776652 22344555666666655 235678999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCC--------ccCCCCEEEEEecCC-------------
Q 003743 329 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKS--------SCGIGPIAFVASAQS------------- 383 (799)
Q Consensus 329 iD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~----~~~~--------~~~~~~v~vI~ttn~------------- 383 (799)
||.+.....+.. -..+-+...+...|+.++++... .+.. .....++++|+....
T Consensus 171 IDKIarkSeN~S-ITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~ 249 (408)
T COG1219 171 IDKIARKSENPS-ITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGK 249 (408)
T ss_pred hhhhhccCCCCC-cccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccC
Confidence 999985432221 11222234677888888886431 1110 122234555543210
Q ss_pred ---------C--C-----------ccchhhhcc-------CceeEEEeccCCCHHHHHHHHH--------HH---hh--h
Q 003743 384 ---------L--E-----------KIPQSLTSS-------GRFDFHVQLPAPAASERKAILE--------HE---IQ--R 421 (799)
Q Consensus 384 ---------~--~-----------~ld~aL~r~-------gRf~~~i~~~~p~~~er~~Il~--------~~---l~--~ 421 (799)
. + -.++.|..- ||++....+...+.+.+.+|+. +| +. .
T Consensus 250 ~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~ 329 (408)
T COG1219 250 KGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDG 329 (408)
T ss_pred CcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccC
Confidence 0 0 011222221 5999888999999999998874 22 22 2
Q ss_pred cccCCCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhcc
Q 003743 422 RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 460 (799)
Q Consensus 422 ~~~~~~~~~l~~la~~~--~g~s~~dl~~lv~~A~~~a~~r 460 (799)
..+.+.++++..+|+.. ...-.+.|+.++.......+-.
T Consensus 330 V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 330 VELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFE 370 (408)
T ss_pred ceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhh
Confidence 33557888888888764 2333567888877766655544
No 312
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.07 E-value=2.8e-09 Score=128.01 Aligned_cols=210 Identities=16% Similarity=0.200 Sum_probs=131.4
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|.+++|....+..+++++..+.. ...+|||+|++|||||++|+++....... ..+++.++|
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~-------------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c 435 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ-------------SDSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNC 435 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEec
Confidence 35678899999999999998876543 23469999999999999999999876432 268899999
Q ss_pred ccccccch---------hhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 003743 295 SRLSLEKG---------PIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 363 (799)
Q Consensus 295 s~l~~~~~---------~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~-- 363 (799)
..+..... +.................+++||||||+.+.. .+...|+..++...
T Consensus 436 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~---------------~~Q~~L~~~l~~~~~~ 500 (686)
T PRK15429 436 AAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL---------------ELQPKLLRVLQEQEFE 500 (686)
T ss_pred ccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH---------------HHHHHHHHHHHhCCEE
Confidence 87643210 00000000011111224567999999999862 45556666665422
Q ss_pred cccCCccCCCCEEEEEecCCCC-------ccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh------ccc-CC
Q 003743 364 EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR------RSL-EC 426 (799)
Q Consensus 364 ~~~~~~~~~~~v~vI~ttn~~~-------~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~------~~~-~~ 426 (799)
..+.......++.+|++|+..- .+.+.|.. |+. ..|.+|+... +++..+++.++.+ +.+ .+
T Consensus 501 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~ 578 (686)
T PRK15429 501 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSI 578 (686)
T ss_pred eCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 1111111123577888887631 12233333 443 2455555543 3444556655542 122 47
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
++++++.|..+..-.+.++|++++++++..+
T Consensus 579 s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 579 PAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 8999999999888889999999999988654
No 313
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.2e-09 Score=115.50 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=114.4
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc--eeeEEEEEec
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCC 294 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~--~~~~~~~v~~ 294 (799)
+|++++|.+.+++.+.+.+.. -..+..+||+||+|+|||++|+++|+.+..... ....+..+..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~--------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK--------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc--------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 478889988887777665421 123456899999999999999999998753211 1111222222
Q ss_pred ccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 003743 295 SRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 370 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~ 370 (799)
. .+.. ...+.++++...+. ....-|++||++|.+.. ...+.|+..+++...
T Consensus 68 ~--~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEepp~------ 122 (313)
T PRK05564 68 I--NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEEPPK------ 122 (313)
T ss_pred c--cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCC------
Confidence 1 1111 11122444444332 23455999999999852 345566666665332
Q ss_pred CCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCC
Q 003743 371 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 371 ~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~ 441 (799)
.+++|.+|+.++.+.+.+++ |.. .++|++|+.++....+...+. .++++.++.++..+.|-
T Consensus 123 ---~t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 123 ---GVFIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGI 183 (313)
T ss_pred ---CeEEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCC
Confidence 35666666778999999999 765 899999999999888775443 35666677777777663
No 314
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.06 E-value=2.5e-09 Score=127.61 Aligned_cols=202 Identities=13% Similarity=0.169 Sum_probs=130.0
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
.+|++++|....+.++++.+..+.. ...+|||+|++||||+++|+++....... ..+++.+||+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~-------------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~---~~pfv~vnc~ 385 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK-------------SSFPVLLCGEEGVGKALLAQAIHNESERA---AGPYIAVNCQ 385 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC-------------cCCCEEEECCCCcCHHHHHHHHHHhCCcc---CCCeEEEECC
Confidence 4678899999999999988876654 23459999999999999999999876422 2689999998
Q ss_pred cccccchhhHHHHHHHHHHH------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 003743 296 RLSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 363 (799)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~~------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~ 363 (799)
.+..... . ..+|.. .....+++||||||+.+.. .....|+.+++...
T Consensus 386 ~~~~~~~---~---~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~---------------~~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 386 LYPDEAL---A---EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP---------------ELQSALLQVLKTGV 444 (638)
T ss_pred CCChHHH---H---HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH---------------HHHHHHHHHHhcCc
Confidence 8753211 1 112211 1123567999999999862 45556666665322
Q ss_pred cc--cCCccCCCCEEEEEecCCCC-------ccchhhhccCce-eEEEeccCCCH--HHHHHHHHHHhhhc------ccC
Q 003743 364 EK--RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQRR------SLE 425 (799)
Q Consensus 364 ~~--~~~~~~~~~v~vI~ttn~~~-------~ld~aL~r~gRf-~~~i~~~~p~~--~er~~Il~~~l~~~------~~~ 425 (799)
-. +.......++.+|+||+..- .+.+.|.- |+ ...|.+|+... +++..+++.++... .+.
T Consensus 445 ~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~ 522 (638)
T PRK11388 445 ITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK 522 (638)
T ss_pred EEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 10 00000011467888887531 12222322 33 34456665554 34555666665432 346
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 426 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 426 ~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
++++++..|..+....+.++|++++++++..
T Consensus 523 ~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 523 IDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred cCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 8999999999988777899999999987753
No 315
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.06 E-value=2.7e-10 Score=108.44 Aligned_cols=110 Identities=26% Similarity=0.371 Sum_probs=71.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh--hhhcccHHH-H-----HHHHHHhHhcCCeEEEEcccccccC
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN--KYIGASEQA-V-----RDIFSKATAAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~--~~~g~se~~-i-----~~~f~~a~~~~p~ILfiDEid~l~~ 616 (799)
+|||+||||||||++|+.+|+.++.+++.++++.... ...|..... - ...+..+. ..++|+||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 5899999999999999999999999999998876322 111111100 0 00000011 14579999999987
Q ss_pred CCCCCCCchhhHHHHHHHhhccCccc-----------cC------cEEEEEecCCCC----ccChhhcCCCCc
Q 003743 617 KRGHDNTGVTDRVVNQFLTELDGVEV-----------LT------GVFVFAATSRPD----LLDAALLRPGRL 668 (799)
Q Consensus 617 ~r~~~~~~~~~r~~~~ll~~ld~~~~-----------~~------~vlvi~ttn~~~----~ld~al~r~gRf 668 (799)
...++..|+..++.-.. .. ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 34566666666543211 11 389999999998 79999999 87
No 316
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.05 E-value=2.1e-09 Score=124.45 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=133.1
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
.+..++|....+.++.+.+..+-. .+.+|||+|++||||+++|+++....... ..+++.+||..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-------------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~ 248 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-------------SDLNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAA 248 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEccc
Confidence 467789999999999998876543 34569999999999999999999876532 26899999998
Q ss_pred ccccchhhHHHHHHHHHH---------------HHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 003743 297 LSLEKGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 361 (799)
Q Consensus 297 l~~~~~~~~~~~l~~~~~---------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~ 361 (799)
+..... .. .+|. ......++.|||||||.+.. .....|+..++.
T Consensus 249 ~~~~~~---e~---~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~---------------~~Q~~Ll~~l~~ 307 (509)
T PRK05022 249 LPESLA---ES---ELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL---------------ALQAKLLRVLQY 307 (509)
T ss_pred CChHHH---HH---HhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH---------------HHHHHHHHHHhc
Confidence 753211 11 1111 01123567899999999962 455566666553
Q ss_pred hc--cccCCccCCCCEEEEEecCCC-------CccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh-------c
Q 003743 362 YG--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR-------R 422 (799)
Q Consensus 362 ~~--~~~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~-------~ 422 (799)
.. ..........++.+|++|+.. ..+.+.|.. |+. ..|.+|+... ++...+++.++.. .
T Consensus 308 ~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~ 385 (509)
T PRK05022 308 GEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLR 385 (509)
T ss_pred CCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCC
Confidence 22 000011111247788888763 123444444 443 3455665543 3455555555442 2
Q ss_pred ccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 003743 423 SLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 458 (799)
Q Consensus 423 ~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 458 (799)
...++++++..|..+....|.++|++++.+++..+.
T Consensus 386 ~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 386 SLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 356899999999999888899999999999987654
No 317
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=1e-09 Score=103.18 Aligned_cols=126 Identities=27% Similarity=0.344 Sum_probs=82.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCe---EEEEeccchhhhh--------------hcccHHHHHHHHHHhHhcCCeE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNKY--------------IGASEQAVRDIFSKATAAAPCL 605 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~---~i~i~~~~l~~~~--------------~g~se~~i~~~f~~a~~~~p~I 605 (799)
+.+++|+||||||||++++.+|..+... ++.+++....... ..........++..++...|.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999765 8888887653321 1233456778888888877899
Q ss_pred EEEcccccccCCCCCCCCchhhHHHHHH--HhhccCccccCcEEEEEecCC-CCccChhhcCCCCcceeeecCCC
Q 003743 606 LFFDEFDSIAPKRGHDNTGVTDRVVNQF--LTELDGVEVLTGVFVFAATSR-PDLLDAALLRPGRLDRLLFCDFP 677 (799)
Q Consensus 606 LfiDEid~l~~~r~~~~~~~~~r~~~~l--l~~ld~~~~~~~vlvi~ttn~-~~~ld~al~r~gRf~~~i~~~~p 677 (799)
|||||++.+...... ...... ..............+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE-------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH-------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998643210 000000 000111123455778888886 3334445555 88888777654
No 318
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=1.7e-09 Score=116.76 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=122.7
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe----------EEEEec
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FISVKG 576 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~----------~i~i~~ 576 (799)
.|+++.|++.+++.+...+... +.+..+||+||+|+||+++|.++|+.+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999887642 223489999999999999999999875211 111111
Q ss_pred cchh---------hh--------hhc--------ccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhh
Q 003743 577 PELL---------NK--------YIG--------ASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTD 627 (799)
Q Consensus 577 ~~l~---------~~--------~~g--------~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~ 627 (799)
+|+. ++ ..| -.-..++++.+.+. .+...|++||++|.+ ..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 2211 00 001 01124566655442 245579999999998 35
Q ss_pred HHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHH
Q 003743 628 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 707 (799)
Q Consensus 628 r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~ 707 (799)
...|.||+.|+... +.++|..|+.++.+-|.+++ |. ..+.|++|+.++..++++....... .+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 67889999998543 33555677889999999999 54 6789999999999999987643211 12235778888
Q ss_pred CCCCcHHHHHHHHH
Q 003743 708 TEGFSGADLQALLS 721 (799)
Q Consensus 708 ~~g~sg~di~~~~~ 721 (799)
+.|-.+ ...++++
T Consensus 211 a~Gs~~-~al~~l~ 223 (314)
T PRK07399 211 AQGSPG-AAIANIE 223 (314)
T ss_pred cCCCHH-HHHHHHH
Confidence 886444 4444444
No 319
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.05 E-value=1e-09 Score=120.16 Aligned_cols=142 Identities=23% Similarity=0.320 Sum_probs=92.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc------cccchhhHHHHHHHHHHHHHh--cCC--cE
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL------SLEKGPIIRQALSNFISEALD--HAP--SI 323 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l------~~~~~~~~~~~l~~~~~~a~~--~~p--~I 323 (799)
.++|+||.||||||||++|+.+|+.++ .++..+.|..- .+...-.....-...+..... ... +|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~i 115 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVI 115 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceE
Confidence 467899999999999999999999999 67777777532 222111000000000000000 011 39
Q ss_pred EEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc--CC-ccCCCCEEEEEecCC-----CCccchhhhccC
Q 003743 324 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR--KS-SCGIGPIAFVASAQS-----LEKIPQSLTSSG 395 (799)
Q Consensus 324 L~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~--~~-~~~~~~v~vI~ttn~-----~~~ld~aL~r~g 395 (799)
+|+|||++..+ .+.+.|+..|+...-.. .. .....++++|+|.|+ ...+++++++
T Consensus 116 ll~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld-- 178 (329)
T COG0714 116 LLLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD-- 178 (329)
T ss_pred EEEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--
Confidence 99999988753 67888888888744221 11 223457899999994 4567999999
Q ss_pred ceeEEEeccCC-CHHHHHHHHHHH
Q 003743 396 RFDFHVQLPAP-AASERKAILEHE 418 (799)
Q Consensus 396 Rf~~~i~~~~p-~~~er~~Il~~~ 418 (799)
||...+++++| +..+...++...
T Consensus 179 Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 179 RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred hEEEEEecCCCCchHHHHHHHHhC
Confidence 99889999999 445555555443
No 320
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.04 E-value=2.1e-09 Score=127.16 Aligned_cols=154 Identities=20% Similarity=0.295 Sum_probs=104.5
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC--------------------
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------------------- 567 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-------------------- 567 (799)
|..|+|++.++..|.-....+ ...++||.|+||||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 678999999998886555432 12479999999999999999999887
Q ss_pred ---------------CCeEEEEeccchhhhhhcccH--HHH--------HHHHHHhHhcCCeEEEEcccccccCCCCCCC
Q 003743 568 ---------------SLRFISVKGPELLNKYIGASE--QAV--------RDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 622 (799)
Q Consensus 568 ---------------~~~~i~i~~~~l~~~~~g~se--~~i--------~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~ 622 (799)
..+|+.+.+.......+|... ..+ ..++..|.. .|||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~---GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHR---GILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCC---CeEEeChhhhC--------
Confidence 246666655443333334211 111 111222222 39999999998
Q ss_pred CchhhHHHHHHHhhccCc----cc-------cCcEEEEEecCCC-CccChhhcCCCCcceeeecCCCC-HHHHHHHHHHH
Q 003743 623 TGVTDRVVNQFLTELDGV----EV-------LTGVFVFAATSRP-DLLDAALLRPGRLDRLLFCDFPS-PRERLDILKVI 689 (799)
Q Consensus 623 ~~~~~r~~~~ll~~ld~~----~~-------~~~vlvi~ttn~~-~~ld~al~r~gRf~~~i~~~~p~-~~~r~~Il~~~ 689 (799)
...+++.|+..|+.- .. ..++.+|+|+|.. ..+.++|+. ||+..+.++.+. .+++.+|++..
T Consensus 139 ---~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 139 ---DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 456778888877521 11 1358889888853 348899999 999888888774 67788888754
Q ss_pred H
Q 003743 690 S 690 (799)
Q Consensus 690 ~ 690 (799)
.
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 3
No 321
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.04 E-value=7.4e-10 Score=108.97 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=81.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc-cCCceeeEEEEEecccccccchhhHHHHHHHHHHHH----HhcCCcEEEEcc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDN 328 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~-~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a----~~~~p~IL~IDE 328 (799)
+...+||+||+|||||.+|+++|+.+. ... .+++.++++.+... ......+..++..+ .....+||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~---~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSE---RPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSC---CEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCc---cchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHH
Confidence 345799999999999999999999998 222 48899999998771 11111122222211 112234999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc--ccCCccCCCCEEEEEecCCCCc
Q 003743 329 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KRKSSCGIGPIAFVASAQSLEK 386 (799)
Q Consensus 329 iD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~--~~~~~~~~~~v~vI~ttn~~~~ 386 (799)
||.+.+. .....+-....+.+.|+.++++-.- .........++++|+|+|--..
T Consensus 77 idKa~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 77 IDKAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GGGCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred Hhhcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9999864 1122333344778889999986442 2223455678999999997543
No 322
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.03 E-value=9.5e-09 Score=104.26 Aligned_cols=188 Identities=18% Similarity=0.230 Sum_probs=131.2
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc----
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD---- 284 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~---- 284 (799)
|..+..+..+..+++.++....++. +.. . ..-.|+|+|||+|+||-|.+.++.+++...+.
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lks----l~~-~----------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklk 67 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKS----LSS-T----------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLK 67 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHH----hcc-c----------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchhee
Confidence 3334455566666666655544433 221 0 11247999999999999999999988753110
Q ss_pred -------------------eeeEEEEEecccccccchhhHHHHHHHHHHHHHhcC---------CcEEEEccccccccCC
Q 003743 285 -------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA---------PSIVIFDNLDSIISSS 336 (799)
Q Consensus 285 -------------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~---------p~IL~IDEiD~l~~~~ 336 (799)
.....++++.++........ +++++.+..+.. -.+++|-|+|.|..
T Consensus 68 i~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvV----iQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-- 141 (351)
T KOG2035|consen 68 IETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVV----IQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-- 141 (351)
T ss_pred eeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHH----HHHHHHHHHhhcchhhccccceEEEEEechHhhhH--
Confidence 01123445555544443333 333444433222 23899999999972
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHH
Q 003743 337 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILE 416 (799)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~ 416 (799)
.....|..-|+.+.+ ...+|..+|....+-+++++ |.- .|.+|.|+.+|...++.
T Consensus 142 -------------dAQ~aLRRTMEkYs~---------~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~ 196 (351)
T KOG2035|consen 142 -------------DAQHALRRTMEKYSS---------NCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLS 196 (351)
T ss_pred -------------HHHHHHHHHHHHHhc---------CceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHH
Confidence 345667777887765 37888899999999999999 764 68999999999999999
Q ss_pred HHhhhcccCCCHHHHHHHHhhcCCCC
Q 003743 417 HEIQRRSLECSDEILLDVASKCDGYD 442 (799)
Q Consensus 417 ~~l~~~~~~~~~~~l~~la~~~~g~s 442 (799)
..+.+.++.++.+.+..+++.++|--
T Consensus 197 ~v~~kE~l~lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 197 KVLKKEGLQLPKELLKRIAEKSNRNL 222 (351)
T ss_pred HHHHHhcccCcHHHHHHHHHHhcccH
Confidence 99999999999999999999988743
No 323
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.03 E-value=1.2e-08 Score=108.46 Aligned_cols=188 Identities=18% Similarity=0.263 Sum_probs=112.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCC-eEE--E-Eec----cchh---hhhhccc-----H-H---HHHHHH-HHhHhcCC
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSL-RFI--S-VKG----PELL---NKYIGAS-----E-Q---AVRDIF-SKATAAAP 603 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~-~~i--~-i~~----~~l~---~~~~g~s-----e-~---~i~~~f-~~a~~~~p 603 (799)
.++|+||+|+|||++++.++..+.. .++ . +++ .++. ....|.. . . .+...+ .....+.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998752 222 1 111 1111 1111211 1 1 122222 22335667
Q ss_pred eEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-c-cCcEEEEEecCCCCc---cC----hhhcCCCCcceeeec
Q 003743 604 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-V-LTGVFVFAATSRPDL---LD----AALLRPGRLDRLLFC 674 (799)
Q Consensus 604 ~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-~-~~~vlvi~ttn~~~~---ld----~al~r~gRf~~~i~~ 674 (799)
.||+|||++.+.. .....+. .+-... . ...+.|+. +..|+. +. ..+.+ |+...+++
T Consensus 125 ~vliiDe~~~l~~-----------~~~~~l~-~l~~~~~~~~~~~~vvl-~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------ELLEELR-MLSNFQTDNAKLLQIFL-VGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCCH-----------HHHHHHH-HHhCcccCCCCeEEEEE-cCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 8999999998732 1222222 222111 1 12222222 233322 21 23445 77788899
Q ss_pred CCCCHHHHHHHHHHHHccCCC-----CCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHH
Q 003743 675 DFPSPRERLDILKVISRKLPL-----ADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDA 749 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~-----~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e 749 (799)
++.+.++..+++...+...+. -.+..++.|.+.+.|.. +.|..+|..+...|... +...|+.+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~-----------~~~~i~~~ 257 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE-----------EKREIGGE 257 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc-----------CCCCCCHH
Confidence 999999999999888765432 13345778888898876 45888998887777654 22479999
Q ss_pred HHHHHHhhcC
Q 003743 750 LLKSIASKAR 759 (799)
Q Consensus 750 ~l~~a~~~~~ 759 (799)
+++.++..++
T Consensus 258 ~v~~~~~~~~ 267 (269)
T TIGR03015 258 EVREVIAEID 267 (269)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 324
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.03 E-value=3.2e-09 Score=117.46 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=80.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCC-ceeeEEEEEe----cccccccc----hh--hHHHHHHHHHHHHHh--cC
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFVC----CSRLSLEK----GP--IIRQALSNFISEALD--HA 320 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~-~~~~~~~~v~----~s~l~~~~----~~--~~~~~l~~~~~~a~~--~~ 320 (799)
.+++++|+||||||||++|+.+|..+.... ......+.+. ..++.... .+ .....+..++..|.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 356899999999999999999999886321 1112222222 12222111 01 011223344445543 35
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc------------c-ccCCccCCCCEEEEEecCCCC--
Q 003743 321 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG------------E-KRKSSCGIGPIAFVASAQSLE-- 385 (799)
Q Consensus 321 p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~------------~-~~~~~~~~~~v~vI~ttn~~~-- 385 (799)
|.+||||||++.-.+ .++..+..+++.-. . ..+.+..+.++.||+|+|..+
T Consensus 273 ~~vliIDEINRani~--------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs 338 (459)
T PRK11331 273 KYVFIIDEINRANLS--------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS 338 (459)
T ss_pred CcEEEEehhhccCHH--------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccc
Confidence 789999999886421 33334444444211 0 112345567899999999977
Q ss_pred --ccchhhhccCceeEEEeccC
Q 003743 386 --KIPQSLTSSGRFDFHVQLPA 405 (799)
Q Consensus 386 --~ld~aL~r~gRf~~~i~~~~ 405 (799)
.+|.||+| ||. .|++.+
T Consensus 339 ~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 339 LAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hhhccHHHHh--hhh-eEEecC
Confidence 68999999 997 456654
No 325
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=6.6e-09 Score=113.83 Aligned_cols=193 Identities=18% Similarity=0.195 Sum_probs=119.7
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC-----cee--
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-----DLV-- 286 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~-----~~~-- 286 (799)
.+..+..|+|.+.+.+.+...+.. . ..+..+||+||+|+|||++|+.+|+.+.... ...
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~----g----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE----G----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc----C----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 466789999999887776664321 1 2344699999999999999999999986421 000
Q ss_pred -----e------------EEEEEecc-ccccc--chhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCC
Q 003743 287 -----A------------HIVFVCCS-RLSLE--KGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGS 342 (799)
Q Consensus 287 -----~------------~~~~v~~s-~l~~~--~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~ 342 (799)
. .+..+... +.... ......+.++.+..... ....-|++|||+|.+..
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~-------- 155 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR-------- 155 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------
Confidence 0 01111110 00000 00011122333333222 23455999999999952
Q ss_pred CCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhc
Q 003743 343 QPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR 422 (799)
Q Consensus 343 ~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~ 422 (799)
...+.|+..+++... ..++|..|+.++.+.|.+++ |+. .+.|++|+.++..+++.......
T Consensus 156 -------~aanaLLk~LEEpp~---------~~~fiLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~ 216 (351)
T PRK09112 156 -------NAANAILKTLEEPPA---------RALFILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQ 216 (351)
T ss_pred -------HHHHHHHHHHhcCCC---------CceEEEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhccc
Confidence 334556666665332 24555666778888899998 774 89999999999999998743322
Q ss_pred ccCCCHHHHHHHHhhcCCCChhhHHHHH
Q 003743 423 SLECSDEILLDVASKCDGYDAYDLEILV 450 (799)
Q Consensus 423 ~~~~~~~~l~~la~~~~g~s~~dl~~lv 450 (799)
. ++++.+..++..+.| +++....++
T Consensus 217 ~--~~~~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 217 G--SDGEITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred C--CCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2 567778888887776 444333333
No 326
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.7e-09 Score=115.84 Aligned_cols=149 Identities=20% Similarity=0.278 Sum_probs=104.4
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC------------------------eEEEEeccchhhhhhcccHHHHHHHHHHh
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFSKA 598 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~------------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a 598 (799)
+..+||+||+|+|||++|+++|+.+.. .++.+.+..- ++ .-.-+.++++.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHH
Confidence 446999999999999999999987743 2233322110 00 01235667766655
Q ss_pred H----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 599 T----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 599 ~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
. .+...|++||++|++ .....|.||+.|+ ++..++++|.+|+.++.+.|.+++ |. ..+.|
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLE--EPSGDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHh--CCCCCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 3 244569999999998 4568899999998 455678888899999999999999 66 45899
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcH
Q 003743 675 DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 713 (799)
++|+.++..+.++..... ..+.+...++..+.|-.+
T Consensus 163 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred CCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 999999888888754321 123334556667776443
No 327
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=7e-09 Score=114.20 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=115.9
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce--------
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------- 285 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------- 285 (799)
.++.+.+|+|.+.+++.+.+.+.. -..+..+||+||+|+||+++|.++|+.+-.....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~--------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS--------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 366789999998887777664422 1234469999999999999999999998532110
Q ss_pred --------------------eeEEEEEec--cccccc-chhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCC
Q 003743 286 --------------------VAHIVFVCC--SRLSLE-KGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSD 338 (799)
Q Consensus 286 --------------------~~~~~~v~~--s~l~~~-~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~ 338 (799)
...+..+.. .+-... .....-+.++++...+. ...+.|++|||+|.+..
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~---- 155 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA---- 155 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH----
Confidence 001112211 010000 00111233454444432 24567999999999852
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHH
Q 003743 339 PEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 418 (799)
Q Consensus 339 ~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~ 418 (799)
...+.|+..+++... ..++|.+|+.++.+.+.+++ |+. .+.|++|+.++..+++...
T Consensus 156 -----------~aanaLLK~LEepp~---------~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 156 -----------NAANALLKVLEEPPA---------RSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred -----------HHHHHHHHHHhcCCC---------CeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHh
Confidence 345566666665432 36777788888889899888 765 8999999999999998764
Q ss_pred hhhcccCCCHHHHHHHHhhcCC
Q 003743 419 IQRRSLECSDEILLDVASKCDG 440 (799)
Q Consensus 419 l~~~~~~~~~~~l~~la~~~~g 440 (799)
. ....++.+..++..+.|
T Consensus 213 ~----~~~~~~~~~~l~~~s~G 230 (365)
T PRK07471 213 G----PDLPDDPRAALAALAEG 230 (365)
T ss_pred c----ccCCHHHHHHHHHHcCC
Confidence 3 22344445666666666
No 328
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.02 E-value=5.8e-09 Score=119.78 Aligned_cols=208 Identities=14% Similarity=0.136 Sum_probs=127.4
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc-----CCceeeEEE
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-----HKDLVAHIV 290 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~-----~~~~~~~~~ 290 (799)
..|++++|....+.++++.+..+-. ...+|||+|++||||+++|+++...+.. ......+++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~-------------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv 282 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR-------------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 282 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeE
Confidence 4688899999999999988766543 2446999999999999999999987210 111236899
Q ss_pred EEecccccccchh---------hHHHH----HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 003743 291 FVCCSRLSLEKGP---------IIRQA----LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 357 (799)
Q Consensus 291 ~v~~s~l~~~~~~---------~~~~~----l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~ 357 (799)
.+||+.+...... .+... -..+|.. ...+.||||||+.+.. .+...|+.
T Consensus 283 ~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp~---------------~~Q~kLl~ 344 (538)
T PRK15424 283 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI---AHGGTLFLDEIGEMPL---------------PLQTRLLR 344 (538)
T ss_pred EeecccCChhhHHHHhcCCccccccCccccccCCchhc---cCCCEEEEcChHhCCH---------------HHHHHHHh
Confidence 9999887532110 00000 0012222 3457899999999862 45666666
Q ss_pred HHHHhccc--cCCccCCCCEEEEEecCCC-Cc------cchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh----
Q 003743 358 IMDEYGEK--RKSSCGIGPIAFVASAQSL-EK------IPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR---- 421 (799)
Q Consensus 358 ~ld~~~~~--~~~~~~~~~v~vI~ttn~~-~~------ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~---- 421 (799)
.++...-. ........++.+|++||.. +. +.+.|.. |+. ..|.+|+... +++..+++.++..
T Consensus 345 ~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~ 422 (538)
T PRK15424 345 VLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAA 422 (538)
T ss_pred hhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHH
Confidence 66542210 1111112246788888753 11 2223333 443 3455555543 4555667766654
Q ss_pred cccCCCHHHH-------HHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 422 RSLECSDEIL-------LDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 422 ~~~~~~~~~l-------~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
.+..++++++ ..|..+....|.++|++++++++..
T Consensus 423 ~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 423 LSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred cCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 3445666654 5566666666889999999988753
No 329
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.3e-09 Score=110.83 Aligned_cols=198 Identities=21% Similarity=0.313 Sum_probs=128.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccccc--chhhHHHHHHHHHHHH----HhcCCcEEEEcc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE--KGPIIRQALSNFISEA----LDHAPSIVIFDN 328 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~--~~~~~~~~l~~~~~~a----~~~~p~IL~IDE 328 (799)
..+|||.||+|+|||.||+.||+.++ .++...+|..+... .+...+..|..++..| ...+.+|+||||
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDE 299 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDE 299 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEeh
Confidence 35699999999999999999999999 89999999887632 3345566677777665 345678999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccC--------CccCCCCEEEEEecCCC--C---------
Q 003743 329 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRK--------SSCGIGPIAFVASAQSL--E--------- 385 (799)
Q Consensus 329 iD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~--------~~~~~~~v~vI~ttn~~--~--------- 385 (799)
+|.+......-.. ..+-....+...|+.++++.. .+.. ......++++|+..-.. +
T Consensus 300 vDKi~~~~~~i~~-~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d 378 (564)
T KOG0745|consen 300 VDKITKKAESIHT-SRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDD 378 (564)
T ss_pred hhhhcccCccccc-cccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcc
Confidence 9999832111000 011112356677777777532 1111 01223356666542110 0
Q ss_pred ---------------------c------------------------cchhhhccCceeEEEeccCCCHHHHHHHHH----
Q 003743 386 ---------------------K------------------------IPQSLTSSGRFDFHVQLPAPAASERKAILE---- 416 (799)
Q Consensus 386 ---------------------~------------------------ld~aL~r~gRf~~~i~~~~p~~~er~~Il~---- 416 (799)
. +-|.|. |||+..+.|...+.+++.+++.
T Consensus 379 ~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPkn 456 (564)
T KOG0745|consen 379 KSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKN 456 (564)
T ss_pred hhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchh
Confidence 0 012222 5999999999999999988874
Q ss_pred -------HHhh--hcccCCCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhccc
Q 003743 417 -------HEIQ--RRSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 461 (799)
Q Consensus 417 -------~~l~--~~~~~~~~~~l~~la~~~--~g~s~~dl~~lv~~A~~~a~~r~ 461 (799)
.++. ...+.+++++++.+|+.. .+.-.+.|+.++..++..++-..
T Consensus 457 aL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 457 ALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred hHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 1122 223557889999888765 33446779999988888776553
No 330
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=8.6e-09 Score=119.95 Aligned_cols=210 Identities=14% Similarity=0.150 Sum_probs=120.5
Q ss_pred ecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee
Q 003743 207 ERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV 286 (799)
Q Consensus 207 ~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~ 286 (799)
..|.....+..++++++.+..++.+..++..... +..+++.++|+||||||||++++.+|+.++......
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~----------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew 141 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL----------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW 141 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc----------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 4577777899999999999988887777654332 123455699999999999999999999987321110
Q ss_pred eEEEEEecccccc------------cchhhHHHHHHHHHHHHH----------hcCCcEEEEccccccccCCCCCCCCCC
Q 003743 287 AHIVFVCCSRLSL------------EKGPIIRQALSNFISEAL----------DHAPSIVIFDNLDSIISSSSDPEGSQP 344 (799)
Q Consensus 287 ~~~~~v~~s~l~~------------~~~~~~~~~l~~~~~~a~----------~~~p~IL~IDEiD~l~~~~~~~~~~~~ 344 (799)
.+ .++|..... .........+..++..+. .....||||||++.++.. .
T Consensus 142 ~n--pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~------- 211 (637)
T TIGR00602 142 SN--PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D------- 211 (637)
T ss_pred hh--hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-------
Confidence 00 111110000 000111223334444332 124569999999987621 0
Q ss_pred chhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCC------C-------ccchhhhccCceeEEEeccCCCHHHH
Q 003743 345 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSL------E-------KIPQSLTSSGRFDFHVQLPAPAASER 411 (799)
Q Consensus 345 ~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~------~-------~ld~aL~r~gRf~~~i~~~~p~~~er 411 (799)
. ..+..++.+ .+.... ..++++|.+-+.. + .+.+++++..|+. +|.|++++..+.
T Consensus 212 ---~-~~lq~lLr~--~~~e~~-----~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l 279 (637)
T TIGR00602 212 ---T-RALHEILRW--KYVSIG-----RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIM 279 (637)
T ss_pred ---H-HHHHHHHHH--HhhcCC-----CceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHH
Confidence 0 122223221 111111 1123333332211 0 1336777544665 799999999998
Q ss_pred HHHHHHHhhhcccC------C-CHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 412 KAILEHEIQRRSLE------C-SDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 412 ~~Il~~~l~~~~~~------~-~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
...|...+..+... + +++.+..++....| |++..+..
T Consensus 280 ~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~ 323 (637)
T TIGR00602 280 KKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINS 323 (637)
T ss_pred HHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHH
Confidence 88888888764322 2 45678888876555 66665543
No 331
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=9.5e-09 Score=112.24 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=105.2
Q ss_pred CCCCCC-hHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-----------------
Q 003743 508 WDDVGG-LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL----------------- 569 (799)
Q Consensus 508 ~~~i~g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~----------------- 569 (799)
|..|.| ++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+-.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 667766 888888888776531 22345799999999999999999987522
Q ss_pred -------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhcc
Q 003743 570 -------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 638 (799)
Q Consensus 570 -------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld 638 (799)
.+..+... +.. -.-+.++++.+.+. .+...|++|||+|.+ .....+.|++.|+
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHhc
Confidence 12222211 000 12245666655443 234469999999998 4568899999998
Q ss_pred CccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHH
Q 003743 639 GVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 688 (799)
Q Consensus 639 ~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~ 688 (799)
++.+.+++|.+|+.++.+-|++++ |. ..++|++|+.++..++++.
T Consensus 136 --EPp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 --EPSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 455667777788889999999999 44 6789999999988777764
No 332
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.8e-09 Score=107.46 Aligned_cols=81 Identities=23% Similarity=0.330 Sum_probs=63.3
Q ss_pred eEEEEcccccccCCCCCCCCchh-hHHHHHHHhhccCcc--------ccCcEEEEEec----CCCCccChhhcCCCCcce
Q 003743 604 CLLFFDEFDSIAPKRGHDNTGVT-DRVVNQFLTELDGVE--------VLTGVFVFAAT----SRPDLLDAALLRPGRLDR 670 (799)
Q Consensus 604 ~ILfiDEid~l~~~r~~~~~~~~-~r~~~~ll~~ld~~~--------~~~~vlvi~tt----n~~~~ld~al~r~gRf~~ 670 (799)
.|+||||||+++.+.+.+..+++ .-++..||-.++|-. ..+.+++||+. ..|+.|-|.|.- ||+-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 59999999999977654432333 457778887777643 35679999875 468888888885 9999
Q ss_pred eeecCCCCHHHHHHHH
Q 003743 671 LLFCDFPSPRERLDIL 686 (799)
Q Consensus 671 ~i~~~~p~~~~r~~Il 686 (799)
.++....+.+....||
T Consensus 330 RVEL~~Lt~~Df~rIL 345 (444)
T COG1220 330 RVELDALTKEDFERIL 345 (444)
T ss_pred EEEcccCCHHHHHHHH
Confidence 9999999999999888
No 333
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.99 E-value=2.8e-09 Score=122.44 Aligned_cols=206 Identities=15% Similarity=0.151 Sum_probs=130.9
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..|++++|....+..+++.+..+.. ...+|||+|++||||+++|+++...... ...+++.+||
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~-------------~~~pVLI~GE~GTGKe~lA~~IH~~S~r---~~~pfv~inC 271 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR-------------SDATVLILGESGTGKELVAQAIHQLSGR---RDFPFVAINC 271 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCcCHHHHHHHHHHhcCc---CCCCEEEecc
Confidence 35688899999999999988866543 2356999999999999999999987542 2268999999
Q ss_pred ccccccchh---------hHHHH----HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 003743 295 SRLSLEKGP---------IIRQA----LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 361 (799)
Q Consensus 295 s~l~~~~~~---------~~~~~----l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~ 361 (799)
..+...... .+... -..+|.. ...+.||||||+.|.. .+...|+..++.
T Consensus 272 ~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp~---------------~~Q~~Ll~~L~~ 333 (526)
T TIGR02329 272 GAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA---AHRGTLFLDEIGEMPL---------------PLQTRLLRVLEE 333 (526)
T ss_pred ccCChhHHHHHhcCCcccccccccccccccchhh---cCCceEEecChHhCCH---------------HHHHHHHHHHhc
Confidence 887532110 00000 0112222 3457899999999862 455666666654
Q ss_pred hccc--cCCccCCCCEEEEEecCCC-C------ccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh----cccC
Q 003743 362 YGEK--RKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSLE 425 (799)
Q Consensus 362 ~~~~--~~~~~~~~~v~vI~ttn~~-~------~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~----~~~~ 425 (799)
..-. +.......++.+|++|+.. . .+.+.|.. |+. ..|.+|+... ++...++..++.. ....
T Consensus 334 ~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~ 411 (526)
T TIGR02329 334 REVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLP 411 (526)
T ss_pred CcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCC
Confidence 2210 0000111245788887763 1 12233333 443 4566766654 4566666666653 3445
Q ss_pred CCHHHHHH-------HHhhcCCCChhhHHHHHHHHHHH
Q 003743 426 CSDEILLD-------VASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 426 ~~~~~l~~-------la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
++++++.. |..+....+.++|++++.+++..
T Consensus 412 ~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 412 DSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred CCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 78887776 77777777899999999988754
No 334
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.98 E-value=6.6e-10 Score=110.69 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=36.7
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~ 567 (799)
+|.+|.|++.+|..|.-.... ..|+|++||||||||++|+.+...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999766552 2389999999999999999999876
No 335
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.96 E-value=3.4e-09 Score=118.13 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=90.2
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC--eEEEEeccc-hhhhhhcc
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPE-LLNKYIGA 586 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~--~~i~i~~~~-l~~~~~g~ 586 (799)
.+.|.+++.+.+...+. ...++||+||||||||++|++++...+. +|..+.+.- .....+|.
T Consensus 21 ~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 35566666665554432 2458999999999999999999997643 333332220 11122232
Q ss_pred c-HHHH--HHHHHHhHhc---CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--------ccCcEEEEEec
Q 003743 587 S-EQAV--RDIFSKATAA---APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------VLTGVFVFAAT 652 (799)
Q Consensus 587 s-e~~i--~~~f~~a~~~---~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--------~~~~vlvi~tt 652 (799)
. -... ..-|.....+ ...+||+|||.++ ...+++.|+..|..-. ..+..++++||
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 1 0000 1122222111 2249999999876 4568888888883211 12224555566
Q ss_pred CCCCc---cChhhcCCCCcceeeecCCCC-HHHHHHHHHHH
Q 003743 653 SRPDL---LDAALLRPGRLDRLLFCDFPS-PRERLDILKVI 689 (799)
Q Consensus 653 n~~~~---ld~al~r~gRf~~~i~~~~p~-~~~r~~Il~~~ 689 (799)
|.... ..+++.. ||-..+.+|+|+ .++..+|+...
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 75332 4458888 998888999997 56667788653
No 336
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7e-09 Score=107.13 Aligned_cols=97 Identities=27% Similarity=0.447 Sum_probs=74.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh-hhhhcccHHH-HHHHHHHh----HhcCCeEEEEcccccccCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIGASEQA-VRDIFSKA----TAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~-~~~~g~se~~-i~~~f~~a----~~~~p~ILfiDEid~l~~~ 617 (799)
.++||.||+|||||.+|+.+|+.++.||..-++..+. ..|+|+.-++ +..++..| ......||+|||||++..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 5899999999999999999999999999999988875 4699987554 45566554 2233459999999999876
Q ss_pred CCCCC---CchhhHHHHHHHhhccCc
Q 003743 618 RGHDN---TGVTDRVVNQFLTELDGV 640 (799)
Q Consensus 618 r~~~~---~~~~~r~~~~ll~~ld~~ 640 (799)
....+ .-...-++..||+.++|-
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCc
Confidence 53322 112457888999998773
No 337
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=3.1e-09 Score=112.54 Aligned_cols=147 Identities=24% Similarity=0.389 Sum_probs=87.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHh-----------cCCc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----------HAPS 322 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~-----------~~p~ 322 (799)
.++++||+||+|||||++++.+-..+.... .....++++... +...++..++.... .+..
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~---~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~l 102 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDK---YLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKL 102 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCC---EEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccc---cceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEE
Confidence 467899999999999999998776554321 223345554421 11223322222111 2335
Q ss_pred EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH---hccccCCccCCCCEEEEEecCCC---CccchhhhccCc
Q 003743 323 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGR 396 (799)
Q Consensus 323 IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~---~~~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gR 396 (799)
|+||||++... .+..|.+ ...+.|.++++. +......+....++.+++++++. ..+++.|.| .
T Consensus 103 v~fiDDlN~p~---~d~ygtq------~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 103 VLFIDDLNMPQ---PDKYGTQ------PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp EEEEETTT-S------TTS--------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred EEEecccCCCC---CCCCCCc------CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 99999998876 3334443 234555555553 22223345556689999999874 247889998 7
Q ss_pred eeEEEeccCCCHHHHHHHHHHHhhh
Q 003743 397 FDFHVQLPAPAASERKAILEHEIQR 421 (799)
Q Consensus 397 f~~~i~~~~p~~~er~~Il~~~l~~ 421 (799)
|. .+.++.|+.+....|+..++..
T Consensus 172 f~-i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 172 FN-ILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EE-EEE----TCCHHHHHHHHHHHH
T ss_pred eE-EEEecCCChHHHHHHHHHHHhh
Confidence 76 8999999999999999887764
No 338
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=2.5e-09 Score=97.92 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=62.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc------cccccchhhHHHHHHHHHHHHHh-cCCcEEEEccc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------RLSLEKGPIIRQALSNFISEALD-HAPSIVIFDNL 329 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s------~l~~~~~~~~~~~l~~~~~~a~~-~~p~IL~IDEi 329 (799)
|+||.|+||+|||++|+++|+.++ ..+..|.+. ++.+...-.... ..|..... --..|+++|||
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEi 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEI 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETG
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeeccc
Confidence 799999999999999999999998 444444432 222111100000 00000000 01249999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc--CCccCCCCEEEEEecCCCC-----ccchhhhccCcee
Q 003743 330 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR--KSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFD 398 (799)
Q Consensus 330 D~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~--~~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~ 398 (799)
++..+ ++.+.|++.|.+..-.- ....-..+++||+|.|+.+ .++++++. ||-
T Consensus 72 Nrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 72 NRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp GGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 98864 67888888888755321 1122244689999999876 58899998 874
No 339
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=1.2e-08 Score=95.90 Aligned_cols=76 Identities=30% Similarity=0.420 Sum_probs=54.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccch--------------hhHHHHHHHHHHHHHhcC
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG--------------PIIRQALSNFISEALDHA 320 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~--------------~~~~~~l~~~~~~a~~~~ 320 (799)
+.+++|+||||||||++++.+|..+.... ..+++++++....... ..........+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999988432 2466676665432211 122334556667776666
Q ss_pred CcEEEEccccccc
Q 003743 321 PSIVIFDNLDSII 333 (799)
Q Consensus 321 p~IL~IDEiD~l~ 333 (799)
+.+|+|||++.+.
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 7999999999986
No 340
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.92 E-value=1.7e-08 Score=115.26 Aligned_cols=143 Identities=21% Similarity=0.288 Sum_probs=88.6
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC----C-------------
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS----L------------- 569 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~----~------------- 569 (799)
+|.++.|+..+++.+.-.+. ...+++|.||||||||+++++++..+. .
T Consensus 190 d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 67888998888776654332 224799999999999999999997441 1
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhcc
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 638 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld 638 (799)
||.....+......+|.....-...+..|.. .+|||||++.+ ...++..|+..|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----------~~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----------KRSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----------CHHHHHHHHHHHH
Confidence 1111111111111111110001123344433 49999999987 3456777777664
Q ss_pred Ccc----c-------cCcEEEEEecCCC------C-----------------ccChhhcCCCCcceeeecCCCCHH
Q 003743 639 GVE----V-------LTGVFVFAATSRP------D-----------------LLDAALLRPGRLDRLLFCDFPSPR 680 (799)
Q Consensus 639 ~~~----~-------~~~vlvi~ttn~~------~-----------------~ld~al~r~gRf~~~i~~~~p~~~ 680 (799)
.-. . ..++.+|+++|.- + .+..+++. |||..+.+++++..
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 321 1 1357888888852 1 47888888 99999999887554
No 341
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.92 E-value=9.3e-09 Score=118.82 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=101.1
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEE---Eec
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF---VCC 294 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~---v~~ 294 (799)
..++.|.+.++..+.=.+ ++...+..-....+....|+||+|+||||||++++++++.+... .+.. .++
T Consensus 202 ~p~i~G~~~~k~~l~l~l---~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~ 273 (509)
T smart00350 202 APSIYGHEDIKKAILLLL---FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSA 273 (509)
T ss_pred CccccCcHHHHHHHHHHH---hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCc
Confidence 355678877665544322 33211111112233344589999999999999999999987521 1111 122
Q ss_pred ccccccchhh-HHHH--HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---c-ccC
Q 003743 295 SRLSLEKGPI-IRQA--LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---E-KRK 367 (799)
Q Consensus 295 s~l~~~~~~~-~~~~--l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~---~-~~~ 367 (799)
..+....... .... ++. ........++++|||+|.+.. .....|++.|+.-. . .+.
T Consensus 274 ~~l~~~~~~~~~~g~~~~~~--G~l~~A~~Gil~iDEi~~l~~---------------~~q~~L~e~me~~~i~i~k~G~ 336 (509)
T smart00350 274 VGLTAAVTRDPETREFTLEG--GALVLADNGVCCIDEFDKMDD---------------SDRTAIHEAMEQQTISIAKAGI 336 (509)
T ss_pred CCccccceEccCcceEEecC--ccEEecCCCEEEEechhhCCH---------------HHHHHHHHHHhcCEEEEEeCCE
Confidence 2221110000 0000 000 001113467999999999852 45666777776422 1 111
Q ss_pred CccCCCCEEEEEecCCCC-------------ccchhhhccCceeEEE-eccCCCHHHHHHHHHHHhh
Q 003743 368 SSCGIGPIAFVASAQSLE-------------KIPQSLTSSGRFDFHV-QLPAPAASERKAILEHEIQ 420 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~~~-------------~ld~aL~r~gRf~~~i-~~~~p~~~er~~Il~~~l~ 420 (799)
...-..++.+|+|+|+.+ .+++++++ ||+..+ ..+.|+.+...+|+++.+.
T Consensus 337 ~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 337 TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 111223688999999853 58999999 998754 5588899888888887553
No 342
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.92 E-value=1.8e-08 Score=118.15 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=42.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 570 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~ 570 (799)
...++++.|.+++++.+...+.. +.+++|+||||||||++++++|+.++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35688999999999988877652 1389999999999999999999988643
No 343
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=2.4e-08 Score=108.43 Aligned_cols=153 Identities=16% Similarity=0.267 Sum_probs=100.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCce------------------eeEEEEEecccccccchhhHHHHHHHHHHHH
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 316 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a 316 (799)
+..+||+||+|+|||++|+++|+.+...... ...+..+....-. ....-+.++++...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~---~~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD---KTIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC---CCCCHHHHHHHHHHH
Confidence 4569999999999999999999998642110 0112223221100 001123344444443
Q ss_pred H----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhh
Q 003743 317 L----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLT 392 (799)
Q Consensus 317 ~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~ 392 (799)
. ....-|++||++|.+.. ...+.|+..+++-.. .+++|.+|+.++.+.|.++
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEEPp~---------~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEEPSG---------DTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred hhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChhhCcHHHH
Confidence 2 23455899999999962 456667777776432 3788899999999999999
Q ss_pred ccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCC
Q 003743 393 SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 393 r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~ 441 (799)
+ |+. .+.|++|+.++..+.+..... ...++....++..+.|-
T Consensus 155 S--Rc~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 155 S--RCQ-QQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGS 196 (328)
T ss_pred h--hce-eeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCC
Confidence 9 876 699999999999888875431 12444455666666663
No 344
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.91 E-value=1.1e-08 Score=100.51 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=79.6
Q ss_pred ccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 003743 221 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 300 (799)
Q Consensus 221 l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~ 300 (799)
|+|....+.++++.++.+.. .+.+|||+|++||||+.+|++|.+.... ...+++.+||+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~-------------~~~pVlI~GE~GtGK~~lA~~IH~~s~r---~~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-------------SDLPVLITGETGTGKELLARAIHNNSPR---KNGPFISVNCAALPEE 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-------------STS-EEEECSTTSSHHHHHHHHHHCSTT---TTS-EEEEETTTS-HH
T ss_pred CEeCCHHHHHHHHHHHHHhC-------------CCCCEEEEcCCCCcHHHHHHHHHHhhhc---ccCCeEEEehhhhhcc
Confidence 57788889999998877664 3466999999999999999999985542 2278999999887432
Q ss_pred chhh-HHH-----------HHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc--cc
Q 003743 301 KGPI-IRQ-----------ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KR 366 (799)
Q Consensus 301 ~~~~-~~~-----------~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~--~~ 366 (799)
.... +-. .-..++.. ...++||||||+.|.+ .+...|+++++.-.- ..
T Consensus 65 ~~e~~LFG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~~---------------~~Q~~Ll~~l~~~~~~~~g 126 (168)
T PF00158_consen 65 LLESELFGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLPP---------------ELQAKLLRVLEEGKFTRLG 126 (168)
T ss_dssp HHHHHHHEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS-H---------------HHHHHHHHHHHHSEEECCT
T ss_pred hhhhhhhccccccccccccccCCceee---ccceEEeecchhhhHH---------------HHHHHHHHHHhhchhcccc
Confidence 1100 000 00123333 3567999999999963 566777777764321 11
Q ss_pred CCccCCCCEEEEEecCC
Q 003743 367 KSSCGIGPIAFVASAQS 383 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~ 383 (799)
.......++.+|++|+.
T Consensus 127 ~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 127 SDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSSEEE--EEEEEEESS
T ss_pred ccccccccceEEeecCc
Confidence 11111235888888875
No 345
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.91 E-value=4.5e-08 Score=110.90 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=133.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEeccchhhh----------hhcccH------HHHHHHHHHh
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELLNK----------YIGASE------QAVRDIFSKA 598 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~~~~l~~~----------~~g~se------~~i~~~f~~a 598 (799)
.+.+.|.||||||.++..+.+.+ .+.+++||+-.+.+. +.|+.. ..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68889999999999999998855 467899998776432 223321 1233333321
Q ss_pred -HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc----ChhhcCCCCcc-eee
Q 003743 599 -TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL----DAALLRPGRLD-RLL 672 (799)
Q Consensus 599 -~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l----d~al~r~gRf~-~~i 672 (799)
....++||+|||.|.|..+. ..++..|..+-. .....++||+..|..+.. .....+ |++ ..|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~--------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi 571 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS--------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRI 571 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc--------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccceee
Confidence 23557899999999998763 345555555432 345678888888876653 333334 665 678
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHH--HHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHH
Q 003743 673 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGA--DLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDAL 750 (799)
Q Consensus 673 ~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~--di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~ 750 (799)
.|.+|+..++.+|+..++........-..+.+|+.....||. ....+|+.|...|-.+... ........++.-|
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~----~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVK----GKLAVSQLVGILH 647 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccc----ccccccceeehHH
Confidence 999999999999999999887433333355555555545542 2334688887777666541 1223445789999
Q ss_pred HHHHHhhcCCC
Q 003743 751 LKSIASKARPS 761 (799)
Q Consensus 751 l~~a~~~~~~~ 761 (799)
+.+|+..+-.+
T Consensus 648 v~~Ai~em~~~ 658 (767)
T KOG1514|consen 648 VMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHhhh
Confidence 99999877543
No 346
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.90 E-value=1e-08 Score=121.27 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=98.1
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC-------------
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK------------- 283 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~------------- 283 (799)
+|..|+|.+..+..+. ...+. +...+|||.||||||||++|+++++.+....
T Consensus 2 pf~~ivGq~~~~~al~---~~av~------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~ 66 (633)
T TIGR02442 2 PFTAIVGQEDLKLALL---LNAVD------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDD 66 (633)
T ss_pred CcchhcChHHHHHHHH---HHhhC------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCC
Confidence 4678888776654332 11221 2235799999999999999999999983100
Q ss_pred ----------------ceeeEEEEEecccccccchhh--HHHHHHH---HHH--HHHhcCCcEEEEccccccccCCCCCC
Q 003743 284 ----------------DLVAHIVFVCCSRLSLEKGPI--IRQALSN---FIS--EALDHAPSIVIFDNLDSIISSSSDPE 340 (799)
Q Consensus 284 ----------------~~~~~~~~v~~s~l~~~~~~~--~~~~l~~---~~~--~a~~~~p~IL~IDEiD~l~~~~~~~~ 340 (799)
....+++.+.++.....-.|. +...+.. .+. .+.....+|||||||+.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 67 PEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------ 140 (633)
T ss_pred ccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence 001344444433211100010 0111100 000 00112456999999999862
Q ss_pred CCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCCC-CccchhhhccCceeEEEeccCCC-HHHHHHH
Q 003743 341 GSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSL-EKIPQSLTSSGRFDFHVQLPAPA-ASERKAI 414 (799)
Q Consensus 341 ~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~-~~ld~aL~r~gRf~~~i~~~~p~-~~er~~I 414 (799)
.....|++.++.-. ..........++.+|+|+|.. ..+.++|.. ||+.+|.++.+. .+++.++
T Consensus 141 ---------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 141 ---------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ---------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 56677777776421 111111222358999999974 368899999 999999998875 4667777
Q ss_pred HHH
Q 003743 415 LEH 417 (799)
Q Consensus 415 l~~ 417 (799)
++.
T Consensus 210 l~~ 212 (633)
T TIGR02442 210 IRR 212 (633)
T ss_pred HHH
Confidence 654
No 347
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.89 E-value=4e-09 Score=109.32 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=132.6
Q ss_pred EeeecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC
Q 003743 204 TVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK 283 (799)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~ 283 (799)
++-..|.....+..+.++++-+++...+.+. .+. .++| |.|+|||||||||+.+.+.|+.+....
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~----~~~--------~~lP---h~L~YgPPGtGktsti~a~a~~ly~~~ 90 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRY----SGM--------PGLP---HLLFYGPPGTGKTSTILANARDFYSPH 90 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHh----ccC--------CCCC---cccccCCCCCCCCCchhhhhhhhcCCC
Confidence 3445677777788889999988877766653 211 1233 899999999999999999999987432
Q ss_pred ceeeEEEEEecccccccchhhHHHHHHHHHHHHHh-------cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHH
Q 003743 284 DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 356 (799)
Q Consensus 284 ~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~-------~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll 356 (799)
.....+...+.++-.+-.. .+..+ ..|..... ....+++|||+|++.. ...+.|.
T Consensus 91 ~~~~m~lelnaSd~rgid~--vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT~---------------~AQnALR 152 (360)
T KOG0990|consen 91 PTTSMLLELNASDDRGIDP--VRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMTR---------------DAQNALR 152 (360)
T ss_pred CchhHHHHhhccCccCCcc--hHHHH-HHHHhhccceeccccCceeEEEecchhHhhH---------------HHHHHHH
Confidence 2222234455555443322 22222 23333321 2556899999999972 3344555
Q ss_pred HHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHh
Q 003743 357 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 436 (799)
Q Consensus 357 ~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~ 436 (799)
+..+.+.. ++.|+..+|++..+.|++.+ |+. .+.|.+.+..+....+.+.++......+++....++.
T Consensus 153 Rviek~t~---------n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r 220 (360)
T KOG0990|consen 153 RVIEKYTA---------NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR 220 (360)
T ss_pred HHHHHhcc---------ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH
Confidence 55555543 35666778999999999999 887 7889999999999999999998888888887777666
Q ss_pred hcCC
Q 003743 437 KCDG 440 (799)
Q Consensus 437 ~~~g 440 (799)
...|
T Consensus 221 ~s~g 224 (360)
T KOG0990|consen 221 LSVG 224 (360)
T ss_pred HhHH
Confidence 5444
No 348
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=3.9e-08 Score=106.32 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=116.6
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc------------
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 284 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~------------ 284 (799)
.|++|+|.+.+++.+.+.+..- ..+..+||+||+|+||+++|.++|+.+.....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~--------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~ 67 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN--------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEG 67 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccC
Confidence 4788999998888777655221 23457999999999999999999999753210
Q ss_pred eeeEEEEEecccc-cccc---------------h-hhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCC
Q 003743 285 LVAHIVFVCCSRL-SLEK---------------G-PIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQ 343 (799)
Q Consensus 285 ~~~~~~~v~~s~l-~~~~---------------~-~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~ 343 (799)
....+.++.+... .+.. . ...-+.++++...+. .....|++||++|.+..
T Consensus 68 ~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~--------- 138 (314)
T PRK07399 68 NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE--------- 138 (314)
T ss_pred CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH---------
Confidence 0011222222100 0100 0 000123444444432 23456999999999852
Q ss_pred CchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc
Q 003743 344 PSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS 423 (799)
Q Consensus 344 ~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~ 423 (799)
...+.|+..+++.. +.++|..|+.++.+.|.+++ |.. .+.|++++.++..+++........
T Consensus 139 ------~aaNaLLK~LEEPp----------~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~ 199 (314)
T PRK07399 139 ------AAANALLKTLEEPG----------NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI 199 (314)
T ss_pred ------HHHHHHHHHHhCCC----------CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc
Confidence 34566777777643 14566677788999999999 765 899999999999999987643222
Q ss_pred cCCCHHHHHHHHhhcCCCChhhHHHHH
Q 003743 424 LECSDEILLDVASKCDGYDAYDLEILV 450 (799)
Q Consensus 424 ~~~~~~~l~~la~~~~g~s~~dl~~lv 450 (799)
. +..+..++....| +++....++
T Consensus 200 ~---~~~~~~l~~~a~G-s~~~al~~l 222 (314)
T PRK07399 200 L---NINFPELLALAQG-SPGAAIANI 222 (314)
T ss_pred c---hhHHHHHHHHcCC-CHHHHHHHH
Confidence 1 1224566666666 444433333
No 349
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=1.1e-07 Score=103.24 Aligned_cols=232 Identities=18% Similarity=0.184 Sum_probs=145.8
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchh---
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELL--- 580 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~--- 580 (799)
..+.|-+.....+.+++..++.. ..++.+.+.|-||||||.+..-+-... +...+++||..+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45677777778888877755432 456789999999999999887555433 2355888887532
Q ss_pred -------hhh----h-cccHHHHHHHHHHhH-h-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcE
Q 003743 581 -------NKY----I-GASEQAVRDIFSKAT-A-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV 646 (799)
Q Consensus 581 -------~~~----~-g~se~~i~~~f~~a~-~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~v 646 (799)
+.+ . +.++......|.... . ..+-||++||+|.|..+. .+++.++.. ++. ....++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--------~~vLy~lFe-wp~-lp~sr~ 290 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--------QTVLYTLFE-WPK-LPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--------cceeeeehh-ccc-CCccee
Confidence 111 1 122334445555442 2 236799999999998542 222223222 222 246678
Q ss_pred EEEEecCCCCccChhhcC----CCCcceeeecCCCCHHHHHHHHHHHHccCCCCC--cccHHHHHHHCCCCcHHHHHHH-
Q 003743 647 FVFAATSRPDLLDAALLR----PGRLDRLLFCDFPSPRERLDILKVISRKLPLAD--DVDLEAIAHMTEGFSGADLQAL- 719 (799)
Q Consensus 647 lvi~ttn~~~~ld~al~r----~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~--~~~~~~la~~~~g~sg~di~~~- 719 (799)
++||..|..++-|..|.| .+--...+.|+||+.++..+|++..+...+... +..++..|+...|.| ||++.+
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S-GDlRkaL 369 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS-GDLRKAL 369 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc-hhHHHHH
Confidence 999999999887766554 122347899999999999999999988776543 345777788877666 577765
Q ss_pred --HHHHHHHHHHHHhcccCCC-----CCCCCCcccHHHHHHHHhhcCC
Q 003743 720 --LSDAQLSAVHEILNNIDSN-----EPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 720 --~~~a~~~a~~~~~~~~~~~-----~~~~~~~it~e~l~~a~~~~~~ 760 (799)
|+.|...|-.......... .+.....|-.+|+-.++.++-.
T Consensus 370 dv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 5554444432222110111 1112245668888888776543
No 350
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.6e-08 Score=110.42 Aligned_cols=128 Identities=24% Similarity=0.314 Sum_probs=88.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhccCCc------------------eeeEEEEEecccccccchhhHHHHHHHHHHHHHh
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD 318 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~~~~~------------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~ 318 (799)
.+||+||||+|||++|.++|+.+..... ....++.++.++..... .....++++......
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 5999999999999999999999873321 12357777777755532 223334444443322
Q ss_pred ----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhcc
Q 003743 319 ----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 394 (799)
Q Consensus 319 ----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~ 394 (799)
...-|++|||+|.+.. ...+.++..++.... +..+|.+||.+..+-+.+++
T Consensus 104 ~~~~~~~kviiidead~mt~---------------~A~nallk~lEep~~---------~~~~il~~n~~~~il~tI~S- 158 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE---------------DAANALLKTLEEPPK---------NTRFILITNDPSKILPTIRS- 158 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhccCCC---------CeEEEEEcCChhhccchhhh-
Confidence 2345999999999973 344556666655443 47899999999999999999
Q ss_pred CceeEEEeccCCCHHHHHH
Q 003743 395 GRFDFHVQLPAPAASERKA 413 (799)
Q Consensus 395 gRf~~~i~~~~p~~~er~~ 413 (799)
|.. .+.|++|+......
T Consensus 159 -Rc~-~i~f~~~~~~~~i~ 175 (325)
T COG0470 159 -RCQ-RIRFKPPSRLEAIA 175 (325)
T ss_pred -cce-eeecCCchHHHHHH
Confidence 765 78888755444433
No 351
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.87 E-value=5.6e-10 Score=102.09 Aligned_cols=109 Identities=27% Similarity=0.389 Sum_probs=60.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEecc-chh-hhhhcccHHHH-HHHHHHhHhcCC---eEEEEcccccccCCC
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP-ELL-NKYIGASEQAV-RDIFSKATAAAP---CLLFFDEFDSIAPKR 618 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~-~l~-~~~~g~se~~i-~~~f~~a~~~~p---~ILfiDEid~l~~~r 618 (799)
|+||.|+||+|||++|+++|..++..|..|.+. ++. +...|..--.- ...|+-. ..| .|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~--~GPif~~ill~DEiNra---- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFR--PGPIFTNILLADEINRA---- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEE--E-TT-SSEEEEETGGGS----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEee--cChhhhceeeecccccC----
Confidence 689999999999999999999999999988764 332 11112110000 0000000 111 39999999987
Q ss_pred CCCCCchhhHHHHHHHhhccCc---------cccCcEEEEEecCCCCc-----cChhhcCCCCc
Q 003743 619 GHDNTGVTDRVVNQFLTELDGV---------EVLTGVFVFAATSRPDL-----LDAALLRPGRL 668 (799)
Q Consensus 619 ~~~~~~~~~r~~~~ll~~ld~~---------~~~~~vlvi~ttn~~~~-----ld~al~r~gRf 668 (799)
..++++.|+..|..- .-.++++||||-|..+. |+.+++. ||
T Consensus 75 -------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 -------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 456788888887432 12346899999998764 8888887 76
No 352
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.86 E-value=5.3e-08 Score=99.26 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC-------------CCc
Q 003743 320 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-------------LEK 386 (799)
Q Consensus 320 ~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~-------------~~~ 386 (799)
-|+||||||+|.|- ..-+.+|...++.--. + ++|+++|+ |.-
T Consensus 296 vPGVLFIDEVhMLD---------------iEcFTyL~kalES~ia---------P-ivifAsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD---------------IECFTYLHKALESPIA---------P-IVIFASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh---------------hHHHHHHHHHhcCCCC---------c-eEEEecCCcceeecCCcCCCCCCC
Confidence 37899999999884 2566777776664332 3 45555554 455
Q ss_pred cchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChh
Q 003743 387 IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 444 (799)
Q Consensus 387 ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~ 444 (799)
+++.|+. |+- .|..-+++.++.++|++...+..++.++++.+..++.....-+.+
T Consensus 351 ip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLR 405 (456)
T KOG1942|consen 351 IPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLR 405 (456)
T ss_pred CCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHH
Confidence 7888888 875 788889999999999999999999999999999998876554433
No 353
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.86 E-value=7.3e-08 Score=104.12 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=45.3
Q ss_pred ccc-cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 217 NVS-SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 217 ~~~-~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
-|. ++.|+++.+++++++++...... -..++.++|+||||||||++|++|++.++.
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~---------~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGL---------EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355 89999999999999887665311 123567899999999999999999999974
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.9e-08 Score=107.89 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=96.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHhCCCe-------------------------EEEEeccchhh--------------
Q 003743 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------------------FISVKGPELLN-------------- 581 (799)
Q Consensus 541 ~~~~~vLL~GppGtGKT~la~alA~~~~~~-------------------------~i~i~~~~l~~-------------- 581 (799)
+.+..+||+||+|+||+++|+++|+.+... +..+.+.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445589999999999999999999876331 22222110000
Q ss_pred hhhc---------ccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEE
Q 003743 582 KYIG---------ASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 648 (799)
Q Consensus 582 ~~~g---------~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlv 648 (799)
.-.| -.-+.++++.+.+. .+...|++||++|.+ .....|.||+.|+ ++..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 0000 11245666665542 244569999999998 4568899999998 67788889
Q ss_pred EEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHH
Q 003743 649 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI 689 (799)
Q Consensus 649 i~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~ 689 (799)
|.+|++|+.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999 66 67899999999998888653
No 355
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1e-08 Score=109.75 Aligned_cols=131 Identities=30% Similarity=0.418 Sum_probs=92.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh-hhhhccc-HHHHHHHHHHhH----hcCCeEEEEcccccccCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIGAS-EQAVRDIFSKAT----AAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~-~~~~g~s-e~~i~~~f~~a~----~~~p~ILfiDEid~l~~~ 617 (799)
.++||.||+|+|||.+|+.||+.+++||...+|..+. ..|+|+. |..|..++..|. ..+-.|+||||+|++..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4899999999999999999999999999999999886 4699986 456777887762 234459999999999854
Q ss_pred CCCCC--Cc-hhhHHHHHHHhhccCcc-----------cc--------CcEEEEEecCCCCccChhhcCCCCcc-eeeec
Q 003743 618 RGHDN--TG-VTDRVVNQFLTELDGVE-----------VL--------TGVFVFAATSRPDLLDAALLRPGRLD-RLLFC 674 (799)
Q Consensus 618 r~~~~--~~-~~~r~~~~ll~~ld~~~-----------~~--------~~vlvi~ttn~~~~ld~al~r~gRf~-~~i~~ 674 (799)
..+-. .. ...-++..||+.++|-. .. .++++|+.. --..||.-+-| |.+ +.+-|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG-AF~~Ldk~I~r--R~~d~slGF 383 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG-AFVGLDKIISR--RLDDKSLGF 383 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecc-cccchHHHHHH--hhcchhccc
Confidence 32211 11 23568889999987631 11 234444332 22346777776 554 56677
Q ss_pred CCC
Q 003743 675 DFP 677 (799)
Q Consensus 675 ~~p 677 (799)
..|
T Consensus 384 g~~ 386 (564)
T KOG0745|consen 384 GAP 386 (564)
T ss_pred CCC
Confidence 777
No 356
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.84 E-value=4.8e-08 Score=95.53 Aligned_cols=134 Identities=23% Similarity=0.327 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-----------------------
Q 003743 513 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL----------------------- 569 (799)
Q Consensus 513 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~----------------------- 569 (799)
|++.+.+.|...+..- +.+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6777888887776531 22345899999999999999999986521
Q ss_pred eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCc
Q 003743 570 RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG 645 (799)
Q Consensus 570 ~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~ 645 (799)
.++.++...-.. .-.-+.++++...+. .+...|++|||+|.| ...+.+.||+.|+ ++..+
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LE--epp~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLE--EPPEN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH--STTTT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhc--CCCCC
Confidence 244443322100 113356777766652 244679999999998 5678999999998 56677
Q ss_pred EEEEEecCCCCccChhhcCCCCcceeeecCCC
Q 003743 646 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 677 (799)
Q Consensus 646 vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p 677 (799)
+.+|.+|+.++.+-|.+++ |. ..+.|++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 8888899999999999999 54 45566553
No 357
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.84 E-value=3.1e-08 Score=115.98 Aligned_cols=144 Identities=23% Similarity=0.244 Sum_probs=89.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH--HHHHHH---HHH--HHHhcCCcEEEEc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII--RQALSN---FIS--EALDHAPSIVIFD 327 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~--~~~l~~---~~~--~a~~~~p~IL~ID 327 (799)
-+||||.|+||||||++++++++.+... .+++.+.+......-.|.. ...+.. .+. .+.....++||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lD 91 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVD 91 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEecc
Confidence 4689999999999999999999987632 2355454321111111111 000000 000 0011345699999
Q ss_pred cccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---c-ccCCccCCCCEEEEEecCCCC---ccchhhhccCceeEE
Q 003743 328 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---E-KRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFH 400 (799)
Q Consensus 328 EiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~---~-~~~~~~~~~~v~vI~ttn~~~---~ld~aL~r~gRf~~~ 400 (799)
||+.+.+ .+...|++.|+.-. . .........++.+|+|+|..+ .++++|.. ||..+
T Consensus 92 Ei~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 92 MANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred chhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 9999863 56777888886432 1 011111223588999999865 78899999 99988
Q ss_pred EeccC-CCHHHHHHHHHHHh
Q 003743 401 VQLPA-PAASERKAILEHEI 419 (799)
Q Consensus 401 i~~~~-p~~~er~~Il~~~l 419 (799)
|.+.. |+.++|.+|++.++
T Consensus 155 v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 87765 46677888887654
No 358
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=8.4e-08 Score=103.55 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=101.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC------------------------eEEEEeccchhhhhhcccHHHHHHHHHHh
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFSKA 598 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~------------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a 598 (799)
+..+||+||+|+||+++|+++|..+-. .++.+.+.+ ++.+ .-+.++++.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHHH
Confidence 347889999999999999999987622 122232211 1111 234566665554
Q ss_pred H----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 599 T----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 599 ~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
. .+...|++||++|+| .....|.||+.|+ ++..++++|.+|+.++.+-|.+++ |. ..+.|
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 2 344569999999998 4668999999998 677788888899999999999999 54 56789
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCc
Q 003743 675 DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFS 712 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~s 712 (799)
++|+.++..+.+..... . .......++..+.|-.
T Consensus 164 ~~~~~~~~~~~L~~~~~---~-~~~~~~~~~~l~~g~p 197 (325)
T PRK06871 164 HPPEEQQALDWLQAQSS---A-EISEILTALRINYGRP 197 (325)
T ss_pred CCCCHHHHHHHHHHHhc---c-ChHHHHHHHHHcCCCH
Confidence 99999988877765431 1 1222444555565533
No 359
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.80 E-value=2e-07 Score=94.84 Aligned_cols=177 Identities=14% Similarity=0.212 Sum_probs=120.0
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-C--C------------
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S--L------------ 569 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-~--~------------ 569 (799)
+..++.+.+.++....++.... .-. -.|+++|||+|+||-+.+-++-+++ | .
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~-~~d------------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSS-TGD------------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcc-cCC------------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 3456667777777777766543 111 1389999999999999888888765 2 1
Q ss_pred --------------eEEEEeccchhhhhhcccH-HHHHHHHHHhHhcC---------CeEEEEcccccccCCCCCCCCch
Q 003743 570 --------------RFISVKGPELLNKYIGASE-QAVRDIFSKATAAA---------PCLLFFDEFDSIAPKRGHDNTGV 625 (799)
Q Consensus 570 --------------~~i~i~~~~l~~~~~g~se-~~i~~~f~~a~~~~---------p~ILfiDEid~l~~~r~~~~~~~ 625 (799)
..+++++++ .|..+ -.+.+++++....+ ..|++|-|+|.|
T Consensus 76 pS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L----------- 139 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL----------- 139 (351)
T ss_pred CCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------
Confidence 123344444 34333 34566666654333 369999999998
Q ss_pred hhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCc-ccHHHH
Q 003743 626 TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADD-VDLEAI 704 (799)
Q Consensus 626 ~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~l 704 (799)
...++..|-..|+.... .+-+|..+|..+.+-+++++++ ..|.+|-|+.++...++...+.+.++.-. .-+..+
T Consensus 140 T~dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrSRC---l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 140 TRDAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRSRC---LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred hHHHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhhhe---eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 45677788888874433 3445557899999999999944 56789999999999999998887766532 224555
Q ss_pred HHHCCCCcHHHHHHH
Q 003743 705 AHMTEGFSGADLQAL 719 (799)
Q Consensus 705 a~~~~g~sg~di~~~ 719 (799)
+..++ ++++.+
T Consensus 215 a~kS~----~nLRrA 225 (351)
T KOG2035|consen 215 AEKSN----RNLRRA 225 (351)
T ss_pred HHHhc----ccHHHH
Confidence 55554 566553
No 360
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.79 E-value=3.2e-08 Score=117.85 Aligned_cols=400 Identities=14% Similarity=0.060 Sum_probs=192.7
Q ss_pred cCCCCCceEEEECCCCCcHHHHH-HHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHH----------h
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLA-KAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----------D 318 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la-~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----------~ 318 (799)
..++..|+|+++||||+|||++. -++-..+- ..++++|-+.-.... ..+.-+-.... -
T Consensus 1489 ~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~------~ev~~~Nfs~~t~T~-----s~ls~Ler~t~yy~~tg~~~l~ 1557 (3164)
T COG5245 1489 EALNTLRSYIYCGPPGSGKEMLMCPSLRSELI------TEVKYFNFSTCTMTP-----SKLSVLERETEYYPNTGVVRLY 1557 (3164)
T ss_pred HHHhccceEEEECCCCCccchhcchhhhhhhh------eeeeEEeeccccCCH-----HHHHHHHhhceeeccCCeEEEc
Confidence 34667889999999999999974 44544444 666777655422211 11211111110 0
Q ss_pred cC----CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCcc-----ch
Q 003743 319 HA----PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI-----PQ 389 (799)
Q Consensus 319 ~~----p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~l-----d~ 389 (799)
+. ..|||.|||+ +.. .....++. +..+++.|+.-..-+.+-...|....++++.++||++.+. +.
T Consensus 1558 PK~~vK~lVLFcDeIn-Lp~--~~~y~~~~---vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245 1558 PKPVVKDLVLFCDEIN-LPY--GFEYYPPT---VIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred cCcchhheEEEeeccC-Ccc--ccccCCCc---eEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHH
Confidence 11 2389999998 431 22232221 1133444444322334444557777789999999997543 34
Q ss_pred hhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccC------CCHHHHHH--------------HHhhcCCCChhhHHHH
Q 003743 390 SLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE------CSDEILLD--------------VASKCDGYDAYDLEIL 449 (799)
Q Consensus 390 aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~------~~~~~l~~--------------la~~~~g~s~~dl~~l 449 (799)
.+.| | +..+.+..|....+.+|...++.+..+- +++..... ..+...+|+|++|..+
T Consensus 1632 Rf~r--~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~ 1708 (3164)
T COG5245 1632 RFIR--K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRS 1708 (3164)
T ss_pred HHhc--C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHH
Confidence 5554 3 3467889999999999999777653322 12222111 1112267899998776
Q ss_pred HHHHHHHHhcccccCCCcc----cccc-----cc---cceecccchhcccccccccccccccccCCCCCCCCCC--CChH
Q 003743 450 VDRTVHAAVGRYLHSDSSF----EKHI-----KP---TLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDV--GGLT 515 (799)
Q Consensus 450 v~~A~~~a~~r~~~~~~~~----~~~~-----~~---~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i--~g~~ 515 (799)
++..-..|-.+.-..+... .... .+ .-...-+.+.+.++.-...++.....-......+..| .|++
T Consensus 1709 lr~i~~yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~g~i~e~~I~fS~Il~~g~~ 1788 (3164)
T COG5245 1709 LRAIFGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREMIAGHIGEAEITFSMILFFGMA 1788 (3164)
T ss_pred HHHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHhccHH
Confidence 6543322211110000000 0000 00 0000000111111100000100000000001112222 1222
Q ss_pred HHH-----HHHHHHhh----ccCCChh-----------HHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 516 DIQ-----NAIKEMIE----LPSKFPN-----------IFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 516 ~~~-----~~l~~~~~----~~~~~~~-----------~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
.+. ..+.+... ..+..+. .+.+.-....+|.+|.|..|+|||.+.+.+|...+.+++++.
T Consensus 1789 ~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~ 1868 (3164)
T COG5245 1789 CLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIF 1868 (3164)
T ss_pred HHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhh
Confidence 111 11111110 0011110 111122345678999999999999999999998888888777
Q ss_pred ccchhhhhhcccHHHHHHHHHHh-HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC
Q 003743 576 GPELLNKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 654 (799)
Q Consensus 576 ~~~l~~~~~g~se~~i~~~f~~a-~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~ 654 (799)
...-.. .|+.+..+....-.+ ..+...++||||--.+- ..++..|..+-....+.-+...|.
T Consensus 1869 ~hr~~~--~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~e---------------s~fLe~~N~LL~n~~~~~lf~gne 1931 (3164)
T COG5245 1869 GHRDEL--TGDFRDSLKVQDLRRNIHGGRECLFIFESIPVE---------------SSFLEDFNPLLDNNRFLCLFSGNE 1931 (3164)
T ss_pred cccccc--hhhHHHHHHHHHHhccccCCceEEEEecCCccc---------------hHHHHHhhhhhhccccchhccchh
Confidence 654322 344444444333333 23445688888743221 123333333333455666666666
Q ss_pred CCccChhhcCCCCcceeeecCCCCHHHHHHHHHHH
Q 003743 655 PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI 689 (799)
Q Consensus 655 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~ 689 (799)
-..|...++-..+ ......-++++..+++-..
T Consensus 1932 ~~~I~~nlr~~~e---s~~L~~dTe~tlt~vFl~~ 1963 (3164)
T COG5245 1932 RIRIPENLRFVFE---STSLEKDTEATLTRVFLVY 1963 (3164)
T ss_pred HHHHHHHHHhhhh---ccccccCCHHHHHHHHHHH
Confidence 5556655553112 2233344778888877543
No 361
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.79 E-value=1.7e-07 Score=98.48 Aligned_cols=215 Identities=20% Similarity=0.276 Sum_probs=125.7
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---------CCeEEEEecc
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGP 577 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---------~~~~i~i~~~ 577 (799)
.|-....-..+.+.|.+.+..|-. ....++||+|++|.|||++++.++... ..|++.+.++
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~----------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR----------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc----------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 354333344455555555554422 123489999999999999999999755 2477777764
Q ss_pred ch------hhh--------hh-ccc-HHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc
Q 003743 578 EL------LNK--------YI-GAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE 641 (799)
Q Consensus 578 ~l------~~~--------~~-g~s-e~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~ 641 (799)
.- +.. |- ..+ .+.-..+....+..++.+|+|||+|.+.... .+-+.+++..+..+.
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLG 176 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHh
Confidence 32 110 10 111 1222333444456677799999999976431 222333444333332
Q ss_pred ccC--cEEEEEecCCCCc--cChhhcCCCCcceeeecCCCC-HHHHHHHHHHHHccCCCCC--ccc----HHHHHHHCCC
Q 003743 642 VLT--GVFVFAATSRPDL--LDAALLRPGRLDRLLFCDFPS-PRERLDILKVISRKLPLAD--DVD----LEAIAHMTEG 710 (799)
Q Consensus 642 ~~~--~vlvi~ttn~~~~--ld~al~r~gRf~~~i~~~~p~-~~~r~~Il~~~~~~~~~~~--~~~----~~~la~~~~g 710 (799)
..- .++.+||-.-... -|+.+.+ ||.. +.+|... .++...++..+...+++.. ... ...|-..++|
T Consensus 177 NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 177 NELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG 253 (302)
T ss_pred hccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 222 3444444332222 5788888 9964 4556654 3455667777776666542 222 2456667877
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHH
Q 003743 711 FSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSI 754 (799)
Q Consensus 711 ~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a 754 (799)
.. +++..+++.|+..|++. +...||.+.+...
T Consensus 254 ~i-G~l~~ll~~aA~~AI~s-----------G~E~It~~~l~~~ 285 (302)
T PF05621_consen 254 LI-GELSRLLNAAAIAAIRS-----------GEERITREILDKI 285 (302)
T ss_pred ch-HHHHHHHHHHHHHHHhc-----------CCceecHHHHhhC
Confidence 55 67788899998888754 3457999888653
No 362
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.79 E-value=4.2e-08 Score=112.28 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=123.4
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l 297 (799)
+..++|....+..+.+.+..+.. ...+++|+|++||||+++|+++....... ..+++.++|..+
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~-------------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~v~v~c~~~ 201 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAP-------------SDITVLLLGESGTGKEVLARALHQLSDRK---DKRFVAINCAAI 201 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCcCHHHHHHHHHHhCCcC---CCCeEEEECCCC
Confidence 44577777777777776654332 23559999999999999999999876522 257889999987
Q ss_pred cccchhhHHHHHHHHHH---------------HHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 003743 298 SLEKGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 362 (799)
Q Consensus 298 ~~~~~~~~~~~l~~~~~---------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~ 362 (799)
.... ... .+|. ......+++||||||+.+.. .....|+++++..
T Consensus 202 ~~~~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~---------------~~q~~l~~~l~~~ 260 (445)
T TIGR02915 202 PENL---LES---ELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL---------------NLQAKLLRFLQER 260 (445)
T ss_pred ChHH---HHH---HhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH---------------HHHHHHHHHHhhC
Confidence 4321 111 1111 01123467999999999962 4455555655532
Q ss_pred ccc--cCCccCCCCEEEEEecCCC-------CccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh----c---c
Q 003743 363 GEK--RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----R---S 423 (799)
Q Consensus 363 ~~~--~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~----~---~ 423 (799)
.-. +.......++.+|++|+.. ..+.+.|.. |+. ..|.+|+... ++...+++.++.. . .
T Consensus 261 ~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~ 338 (445)
T TIGR02915 261 VIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKT 338 (445)
T ss_pred eEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCC
Confidence 210 0000111246778777653 233444544 443 3455555543 2344455555442 1 2
Q ss_pred cCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 424 LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 424 ~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
..++++++..|..+....+.++|++++.+|+..+
T Consensus 339 ~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 339 KGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 4589999999999887788999999999888543
No 363
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9.5e-08 Score=99.56 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=75.2
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-cccCCccCCCCEEEEEecC----CCCccchhhhccCc
Q 003743 322 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQ----SLEKIPQSLTSSGR 396 (799)
Q Consensus 322 ~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~-~~~~~~~~~~~v~vI~ttn----~~~~ld~aL~r~gR 396 (799)
+|+||||||.++..... .+. .-+...+.+-|+.+.++.. +..-+.....-+++|++.. .|.+|-|.|.- |
T Consensus 252 GIvFIDEIDKIa~~~~~-g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--R 326 (444)
T COG1220 252 GIVFIDEIDKIAKRGGS-GGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--R 326 (444)
T ss_pred CeEEEehhhHHHhcCCC-CCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--C
Confidence 49999999999964432 111 2233467777888887644 2222233445588888753 36777788876 9
Q ss_pred eeEEEeccCCCHHHHHHHHH--------HH---hhh--cccCCCHHHHHHHHhhcC
Q 003743 397 FDFHVQLPAPAASERKAILE--------HE---IQR--RSLECSDEILLDVASKCD 439 (799)
Q Consensus 397 f~~~i~~~~p~~~er~~Il~--------~~---l~~--~~~~~~~~~l~~la~~~~ 439 (799)
|+.++++..++.++...||. +| ++. ..+.++++.++.+|....
T Consensus 327 fPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 327 FPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred CceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 99999999999999998874 22 222 234567777777776653
No 364
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=4.8e-08 Score=106.75 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=87.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCce------------------eeEEEEEecccccccchhhHHHHHHHHHHH
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISE 315 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~ 315 (799)
.+..+|||||+|+|||++|+++|+.+...... ...+.++... +.. ...+.++++...
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~ 101 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEE 101 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHH
Confidence 34568999999999999999999997532100 0112222111 111 111334444444
Q ss_pred HH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhh
Q 003743 316 AL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 391 (799)
Q Consensus 316 a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL 391 (799)
+. ....-|++|||+|.+.. ...+.|+..+++... .+++|.+|+.+..+.|++
T Consensus 102 ~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEEPp~---------~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 102 FSKSGVESNKKVYIIEHADKMTA---------------SAANSLLKFLEEPSG---------GTTAILLTENKHQILPTI 157 (329)
T ss_pred HhhCCcccCceEEEeehHhhhCH---------------HHHHHHHHHhcCCCC---------CceEEEEeCChHhCcHHH
Confidence 32 23445999999999852 455677777776433 367777888888999999
Q ss_pred hccCceeEEEeccCCCHHHHHHHHHH
Q 003743 392 TSSGRFDFHVQLPAPAASERKAILEH 417 (799)
Q Consensus 392 ~r~gRf~~~i~~~~p~~~er~~Il~~ 417 (799)
++ |.. .++|++|+.++..+++..
T Consensus 158 rS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred Hh--hce-eeeCCCCCHHHHHHHHHH
Confidence 99 765 899999999998777753
No 365
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.76 E-value=2.9e-07 Score=105.52 Aligned_cols=213 Identities=15% Similarity=0.229 Sum_probs=126.5
Q ss_pred eecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce
Q 003743 206 KERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL 285 (799)
Q Consensus 206 ~~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~ 285 (799)
...|.....+.+.++|......+++|.+++...+.. ....+.+||+||||||||++++.||++++-.
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~----------~~~~~iLlLtGP~G~GKtttv~~La~elg~~--- 72 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG----------SSPKRILLLTGPSGCGKTTTVKVLAKELGFE--- 72 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc----------CCCcceEEEECCCCCCHHHHHHHHHHHhCCe---
Confidence 345777788899999999888888999998765532 2345678899999999999999999999832
Q ss_pred eeEEEEE-eccc----------ccccc--hhhHH---HHHHHH-HHHHH-----------hcCCcEEEEccccccccCCC
Q 003743 286 VAHIVFV-CCSR----------LSLEK--GPIIR---QALSNF-ISEAL-----------DHAPSIVIFDNLDSIISSSS 337 (799)
Q Consensus 286 ~~~~~~v-~~s~----------l~~~~--~~~~~---~~l~~~-~~~a~-----------~~~p~IL~IDEiD~l~~~~~ 337 (799)
+.+- +... +.+.. ..... ..+..+ +.... ...+.||+|||+=.++..
T Consensus 73 ---v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-- 147 (519)
T PF03215_consen 73 ---VQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-- 147 (519)
T ss_pred ---eEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--
Confidence 2221 1111 00000 00000 111111 11111 124569999999655420
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEe-c------CCCC--------ccchhhhccCceeEEEe
Q 003743 338 DPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS-A------QSLE--------KIPQSLTSSGRFDFHVQ 402 (799)
Q Consensus 338 ~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~t-t------n~~~--------~ld~aL~r~gRf~~~i~ 402 (799)
....+...|..++..- .. .|+++|.| + |... .+++.++...++. +|.
T Consensus 148 ---------~~~~f~~~L~~~l~~~----~~----~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~ 209 (519)
T PF03215_consen 148 ---------DTSRFREALRQYLRSS----RC----LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIK 209 (519)
T ss_pred ---------hHHHHHHHHHHHHHcC----CC----CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEE
Confidence 0124455555444321 10 15677666 1 1111 3466666644555 899
Q ss_pred ccCCCHHHHHHHHHHHhhhc-----c-cCCC--HHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 003743 403 LPAPAASERKAILEHEIQRR-----S-LECS--DEILLDVASKCDGYDAYDLEILVDRTVHAAV 458 (799)
Q Consensus 403 ~~~p~~~er~~Il~~~l~~~-----~-~~~~--~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 458 (799)
|.+-+..-....|...+..+ + .... ..+++.|+..+.| ||+..+..-...+.
T Consensus 210 FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 210 FNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred ecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 99999988888888777654 1 1222 3458888877655 88887765554444
No 366
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=7.9e-08 Score=104.77 Aligned_cols=149 Identities=20% Similarity=0.265 Sum_probs=102.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCC------------------------eEEEEeccchhhhhhcccHHHHHHHHHH
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFSK 597 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~------------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~ 597 (799)
.+..+||+||+|+||+++|.++|..+-. .+..+.+..- .. .-+-+.++++.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHHH
Confidence 3447889999999999999999987622 1222322100 00 0123456665554
Q ss_pred h----HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeee
Q 003743 598 A----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 673 (799)
Q Consensus 598 a----~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~ 673 (799)
+ ..+...|++||++|+| .....|.||+.|+ ++..++++|.+|+.|+.+-|.+++ |.. .+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred HhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 4 3345579999999998 4668999999998 677788888899999999999999 654 579
Q ss_pred cCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcH
Q 003743 674 CDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 674 ~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 713 (799)
|++|+.++..+.+... .+++ ..+...++..+.|-.+
T Consensus 164 ~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 164 LAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred CCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHH
Confidence 9999988887776532 1222 2224456666665444
No 367
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.74 E-value=6.7e-08 Score=111.37 Aligned_cols=202 Identities=15% Similarity=0.115 Sum_probs=129.5
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
.+.+++|.......+.+.+..... ...++++.|++|||||++|+++...... ...+++.++|+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~-------------~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~i~i~c~~ 199 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR-------------SSISVLINGESGTGKELVAHALHRHSPR---AKAPFIALNMAA 199 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc-------------cCCeEEEEeCCCCcHHHHHHHHHhcCCC---CCCCeEeeeCCC
Confidence 355678887777777776654332 3445999999999999999999987542 226899999988
Q ss_pred ccccchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 003743 297 LSLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 361 (799)
Q Consensus 297 l~~~~~~~~~~~l~~~~~~---------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~ 361 (799)
+.... .. ..+|.. .....++.|||||+|.+.. .....|+..++.
T Consensus 200 ~~~~~---~~---~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~---------------~~q~~L~~~l~~ 258 (469)
T PRK10923 200 IPKDL---IE---SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL---------------DVQTRLLRVLAD 258 (469)
T ss_pred CCHHH---HH---HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH---------------HHHHHHHHHHhc
Confidence 74321 11 111111 1123467899999999862 445566666554
Q ss_pred hccc--cCCccCCCCEEEEEecCCC-------CccchhhhccCce-eEEEeccCCCH--HHHHHHHHHHhhh----cc--
Q 003743 362 YGEK--RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQR----RS-- 423 (799)
Q Consensus 362 ~~~~--~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf-~~~i~~~~p~~--~er~~Il~~~l~~----~~-- 423 (799)
..-. ........++.+|+||+.. ..+.+.|.. |+ ...|.+|+... +++..+++.++.. .+
T Consensus 259 ~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~ 336 (469)
T PRK10923 259 GQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE 336 (469)
T ss_pred CcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCC
Confidence 2210 0000011246788887652 134456666 66 34566666654 4566677666542 12
Q ss_pred -cCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 424 -LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 424 -~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
..++++++..|..+....+.++|++++++++..+
T Consensus 337 ~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 337 AKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2478999999999988889999999999987554
No 368
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.74 E-value=7.4e-08 Score=94.20 Aligned_cols=123 Identities=23% Similarity=0.315 Sum_probs=79.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCce-----------------eeEEEEEecccccccchhhHHHHHHHHHHHH
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 316 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-----------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a 316 (799)
.+..+||+||+|+||+++|.++|+.+...... ...+..++....... ...+.++.+...+
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~---i~i~~ir~i~~~~ 94 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS---IKIDQIREIIEFL 94 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS---BSHHHHHHHHHHC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch---hhHHHHHHHHHHH
Confidence 45569999999999999999999998643221 233445544432111 1113344555544
Q ss_pred Hh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhh
Q 003743 317 LD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLT 392 (799)
Q Consensus 317 ~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~ 392 (799)
.. ...-|++|||+|.+.. ...+.|+..+++... .+.+|.+|+.++.+.|.++
T Consensus 95 ~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEepp~---------~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 95 SLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEEPPE---------NTYFILITNNPSKILPTIR 150 (162)
T ss_dssp TSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHSTTT---------TEEEEEEES-GGGS-HHHH
T ss_pred HHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcCCCC---------CEEEEEEECChHHChHHHH
Confidence 32 2345999999999962 567788888887654 4899999999999999999
Q ss_pred ccCceeEEEeccCC
Q 003743 393 SSGRFDFHVQLPAP 406 (799)
Q Consensus 393 r~gRf~~~i~~~~p 406 (799)
+ |.- .+.|++.
T Consensus 151 S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 151 S--RCQ-VIRFRPL 161 (162)
T ss_dssp T--TSE-EEEE---
T ss_pred h--hce-EEecCCC
Confidence 9 765 6777654
No 369
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.74 E-value=1.1e-07 Score=110.11 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=99.6
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe-EEEE---eccchhh---
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-FISV---KGPELLN--- 581 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~-~i~i---~~~~l~~--- 581 (799)
..+.|.+.++..+.-.+..... +..-.....+...++||+|+||||||.+|+++++..... ++.. ++..+..
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 3567888887777655433211 111111123344589999999999999999999987543 2221 1211211
Q ss_pred --hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-----------ccCcEEE
Q 003743 582 --KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFV 648 (799)
Q Consensus 582 --~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-----------~~~~vlv 648 (799)
...|+..- -...+..|.. .+++|||++.+. ...+..|+..|+.-. ...++.|
T Consensus 282 ~~~~~g~~~~-~~G~l~~A~~---Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 282 RDPETREFTL-EGGALVLADN---GVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred EccCcceEEe-cCccEEecCC---CEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 00111000 0011122222 499999999984 345566666664311 1245789
Q ss_pred EEecCCCC-------------ccChhhcCCCCcceee-ecCCCCHHHHHHHHHHHHc
Q 003743 649 FAATSRPD-------------LLDAALLRPGRLDRLL-FCDFPSPRERLDILKVISR 691 (799)
Q Consensus 649 i~ttn~~~-------------~ld~al~r~gRf~~~i-~~~~p~~~~r~~Il~~~~~ 691 (799)
|||+|..+ .+++++++ |||.++ ..+.|+.+...+|.++.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999642 48999999 999765 5578999999999988654
No 370
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.73 E-value=8.9e-08 Score=112.18 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=90.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC--eEEEEeccchhhhhhcccH--HHHH--------HHHHHhHhcCCeEEEEcc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASE--QAVR--------DIFSKATAAAPCLLFFDE 610 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~--~~i~i~~~~l~~~~~g~se--~~i~--------~~f~~a~~~~p~ILfiDE 610 (799)
-+++||.|+||||||++|++++..+.. +|+.+.........+|... ..+. .++..|. ..+|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~---~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAP---RGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCC---CCcEeccc
Confidence 358999999999999999999998754 6888875333333333310 0000 0111121 13999999
Q ss_pred cccccCCCCCCCCchhhHHHHHHHhhccCcc-----------ccCcEEEEEecCCCC---ccChhhcCCCCcceeeecC-
Q 003743 611 FDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD---LLDAALLRPGRLDRLLFCD- 675 (799)
Q Consensus 611 id~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-----------~~~~vlvi~ttn~~~---~ld~al~r~gRf~~~i~~~- 675 (799)
|+.+ ...+++.|+..|+.-. ....+.||+|+|..+ .+.++++. ||..++.+.
T Consensus 93 i~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 93 ANLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred hhhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 9998 4567788888875321 113578888888765 58899999 999877665
Q ss_pred CCCHHHHHHHHHHHH
Q 003743 676 FPSPRERLDILKVIS 690 (799)
Q Consensus 676 ~p~~~~r~~Il~~~~ 690 (799)
+|+.++|.+|++...
T Consensus 160 ~~~~~er~eil~~~~ 174 (589)
T TIGR02031 160 VASQDLRVEIVRRER 174 (589)
T ss_pred CCCHHHHHHHHHHHH
Confidence 457788999998765
No 371
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.73 E-value=2.3e-07 Score=95.04 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=93.8
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC------------CCccc
Q 003743 321 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKIP 388 (799)
Q Consensus 321 p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~------------~~~ld 388 (799)
|+||||||+|.|- -.-+++|...++.-.. | +++++||+ |.-+|
T Consensus 289 pGVLFIDEvHMLD---------------IEcFsFlNrAlE~d~~---------P-iiimaTNrgit~iRGTn~~SphGiP 343 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD---------------IECFSFLNRALENDMA---------P-IIIMATNRGITRIRGTNYRSPHGIP 343 (454)
T ss_pred cceEEEeeehhhh---------------hHHHHHHHHHhhhccC---------c-EEEEEcCCceEEeecCCCCCCCCCc
Confidence 7799999999984 1557777777765322 3 45555554 45678
Q ss_pred hhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcc
Q 003743 389 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 468 (799)
Q Consensus 389 ~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~ 468 (799)
-.|+. |.- .|...+++.++.++|++..++...+.+.+++++.|.......+.+---.|+..+...+.+|..
T Consensus 344 ~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~------ 414 (454)
T KOG2680|consen 344 IDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG------ 414 (454)
T ss_pred HHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC------
Confidence 88888 764 788899999999999999999999999999999998887766666666777777777766632
Q ss_pred cccccccceecccchhcc
Q 003743 469 EKHIKPTLVRDDFSQAMH 486 (799)
Q Consensus 469 ~~~~~~~l~~edf~~al~ 486 (799)
..+..+|+..+..
T Consensus 415 -----~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 415 -----KVVEVDDIERVYR 427 (454)
T ss_pred -----ceeehhHHHHHHH
Confidence 3455566655543
No 372
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.73 E-value=4.9e-07 Score=95.05 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=121.1
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC---ceeeEEEEEeccccc
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLS 298 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~---~~~~~~~~v~~s~l~ 298 (799)
+|.. ...++.+.+..++..+ . ..-..++||+|++|.|||++++..++.-.... ....+++.+.+..-.
T Consensus 37 IgY~-~A~~~L~~L~~Ll~~P------~--~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 37 IGYP-RAKEALDRLEELLEYP------K--RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred ecCH-HHHHHHHHHHHHHhCC------c--ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 4443 3445777787777533 1 12234699999999999999999987654221 122466666542111
Q ss_pred cc----------------chhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 003743 299 LE----------------KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 362 (799)
Q Consensus 299 ~~----------------~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~ 362 (799)
.. ........-..+....+...+-+|+|||+|.+... ....+..+++.|..+-..+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGNEL 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhhcc
Confidence 10 00111122222333344456779999999998732 1222334444444432222
Q ss_pred ccccCCccCCCCEEEEEecCCCC--ccchhhhccCceeEEEeccCCCH-HHHHHHHHHHhhhccc----CC-CHHHHHHH
Q 003743 363 GEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSL----EC-SDEILLDV 434 (799)
Q Consensus 363 ~~~~~~~~~~~~v~vI~ttn~~~--~ld~aL~r~gRf~~~i~~~~p~~-~er~~Il~~~l~~~~~----~~-~~~~l~~l 434 (799)
.- +++.++|..-.. .-|+-+.+ ||. .+.+|.... ++...++..+-..-.+ .+ +.+....+
T Consensus 180 ~i---------piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i 247 (302)
T PF05621_consen 180 QI---------PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRI 247 (302)
T ss_pred CC---------CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 21 355555543322 23678888 998 677777765 4677777766443222 22 44556788
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHhcc
Q 003743 435 ASKCDGYDAYDLEILVDRTVHAAVGR 460 (799)
Q Consensus 435 a~~~~g~s~~dl~~lv~~A~~~a~~r 460 (799)
...+.|.. +++..++..|+..|+..
T Consensus 248 ~~~s~G~i-G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 248 HERSEGLI-GELSRLLNAAAIAAIRS 272 (302)
T ss_pred HHHcCCch-HHHHHHHHHHHHHHHhc
Confidence 88888864 57888888888888754
No 373
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=3.9e-07 Score=98.37 Aligned_cols=169 Identities=13% Similarity=0.136 Sum_probs=106.4
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce----------------
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 285 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~---------------- 285 (799)
.|.....+.+.+.+.. -..+..+||+||+|+||+++|+++|+.+......
T Consensus 5 PW~~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~ 70 (325)
T PRK06871 5 PWLQPTYQQITQAFQQ--------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQA 70 (325)
T ss_pred cchHHHHHHHHHHHHc--------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc
Confidence 4566666666554321 0224469999999999999999999998632110
Q ss_pred --eeEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 003743 286 --VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 359 (799)
Q Consensus 286 --~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~l 359 (799)
...+..+...+ +.. ..-+.++++...+. .+..-|++||++|.+.. ...+.|+..+
T Consensus 71 g~HPD~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtL 131 (325)
T PRK06871 71 GNHPDFHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE---------------AAANALLKTL 131 (325)
T ss_pred CCCCCEEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhCH---------------HHHHHHHHHh
Confidence 01122232211 111 11223444444332 23445999999999962 4566777777
Q ss_pred HHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcC
Q 003743 360 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 439 (799)
Q Consensus 360 d~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~ 439 (799)
++-.. .+++|.+|+.++.+.|.+++ |.. .+.|++|+.++..+.+..... .+......++..+.
T Consensus 132 EEPp~---------~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~ 194 (325)
T PRK06871 132 EEPRP---------NTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQSS-----AEISEILTALRINY 194 (325)
T ss_pred cCCCC---------CeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcC
Confidence 76433 48888899999999999999 776 789999999998888875421 12323444555555
Q ss_pred C
Q 003743 440 G 440 (799)
Q Consensus 440 g 440 (799)
|
T Consensus 195 g 195 (325)
T PRK06871 195 G 195 (325)
T ss_pred C
Confidence 5
No 374
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.72 E-value=8.1e-08 Score=114.73 Aligned_cols=125 Identities=19% Similarity=0.242 Sum_probs=77.4
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhh-
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN- 581 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~- 581 (799)
..|+++.|.....+.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 346777776655555544443221 123469999999999999999998875 46999999987532
Q ss_pred ----hhhccc----HHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--cc-------C
Q 003743 582 ----KYIGAS----EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL-------T 644 (799)
Q Consensus 582 ----~~~g~s----e~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~~-------~ 644 (799)
..+|.. .......|+.|. ...||||||+.|. ..++..|+..++.-. +. -
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 222211 111111233333 3499999999983 456667777664321 11 1
Q ss_pred cEEEEEecCCC
Q 003743 645 GVFVFAATSRP 655 (799)
Q Consensus 645 ~vlvi~ttn~~ 655 (799)
.+-||+||+..
T Consensus 457 ~~riI~~t~~~ 467 (638)
T PRK11388 457 DVRVIATTTAD 467 (638)
T ss_pred eEEEEEeccCC
Confidence 46678888764
No 375
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.72 E-value=3.5e-07 Score=103.83 Aligned_cols=209 Identities=19% Similarity=0.232 Sum_probs=125.4
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc----CCceeeEEEEEec
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH----HKDLVAHIVFVCC 294 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~----~~~~~~~~~~v~~ 294 (799)
.+|.+.+..+.+|-..+..++... ..+..+++.|-||||||.+++.+-+.|.. .......++++|.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~----------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINg 465 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ----------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEING 465 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC----------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcc
Confidence 344455555666666665555421 22346899999999999999999998762 2233456777776
Q ss_pred ccccccch---h-------------hHHHHHHHHHHHH-HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 003743 295 SRLSLEKG---P-------------IIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 357 (799)
Q Consensus 295 s~l~~~~~---~-------------~~~~~l~~~~~~a-~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~ 357 (799)
-.+..... . .....+..-|... ....++||+|||+|.|+.. -...|.+
T Consensus 466 m~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------------~QdVlYn 530 (767)
T KOG1514|consen 466 LRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR---------------SQDVLYN 530 (767)
T ss_pred eeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc---------------cHHHHHH
Confidence 55543111 0 0011122222211 1235679999999999842 2334555
Q ss_pred HHHHhccccCCccCCCCEEEEEecCCCCccchhhhcc---Ccee-EEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHH
Q 003743 358 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS---GRFD-FHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 433 (799)
Q Consensus 358 ~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~---gRf~-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~ 433 (799)
++|.-.... ..++||+..|..+. ++.++.. .|++ ..+.|.+++..|+++|+...+... ..+..++++-
T Consensus 531 ~fdWpt~~~------sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aiel 602 (767)
T KOG1514|consen 531 IFDWPTLKN------SKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIEL 602 (767)
T ss_pred HhcCCcCCC------CceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHH
Confidence 555433222 24788888887543 3333321 2443 368999999999999999888776 3456677777
Q ss_pred HHhhcCCCCh--hhHHHHHHHHHHHHhcc
Q 003743 434 VASKCDGYDA--YDLEILVDRTVHAAVGR 460 (799)
Q Consensus 434 la~~~~g~s~--~dl~~lv~~A~~~a~~r 460 (799)
+++.....+| +....+|++|..-|-.+
T Consensus 603 varkVAavSGDaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 603 VARKVAAVSGDARRALDICRRAAEIAEER 631 (767)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhhh
Confidence 7776555544 33345577777655444
No 376
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=6.6e-08 Score=107.44 Aligned_cols=125 Identities=25% Similarity=0.334 Sum_probs=86.8
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhh-
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN- 581 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~- 581 (799)
..|++|+|-......+.+...... ....+||+.|.+||||..+|+++-+.. +.|||.+||..+-.
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 568888886666555555444321 233579999999999999999998876 57999999987532
Q ss_pred ------------hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-----
Q 003743 582 ------------KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V----- 642 (799)
Q Consensus 582 ------------~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~----- 642 (799)
.|.|.....-..+|+.|.++ -||+|||..| +..++..||+.|+.-+ +
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCCC
Confidence 12233322234566666555 8999999887 4567888888875321 1
Q ss_pred --cCcEEEEEecCCC
Q 003743 643 --LTGVFVFAATSRP 655 (799)
Q Consensus 643 --~~~vlvi~ttn~~ 655 (799)
.-.|-||+|||+.
T Consensus 377 ~~~vDVRIIAATN~n 391 (560)
T COG3829 377 PIPVDVRIIAATNRN 391 (560)
T ss_pred ceeeEEEEEeccCcC
Confidence 1148899999974
No 377
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.71 E-value=2e-07 Score=96.89 Aligned_cols=189 Identities=18% Similarity=0.165 Sum_probs=118.5
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCe------EEE
Q 003743 500 SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------FIS 573 (799)
Q Consensus 500 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~------~i~ 573 (799)
..++++..+.++++.+++...+.++... ....|+|||||||||||+...+.|..+-.+ +.+
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 3455566778888888888887776332 122399999999999999999999887542 223
Q ss_pred EeccchhhhhhcccHHHHHHHHHHhH-------hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcE
Q 003743 574 VKGPELLNKYIGASEQAVRDIFSKAT-------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV 646 (799)
Q Consensus 574 i~~~~l~~~~~g~se~~i~~~f~~a~-------~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~v 646 (799)
++.++=.+ ++- .+.--..|..++ ...+..+++||+|.+ ...+++.|-+.........++
T Consensus 99 lnaSd~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t~n~rF 164 (360)
T KOG0990|consen 99 LNASDDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYTANTRF 164 (360)
T ss_pred hhccCccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhccceEE
Confidence 33333211 111 122234454444 236779999999998 456777777766544444444
Q ss_pred EEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHHHCCCCcHHHHHHHHHHHH
Q 003743 647 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADD-VDLEAIAHMTEGFSGADLQALLSDAQ 724 (799)
Q Consensus 647 lvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~sg~di~~~~~~a~ 724 (799)
. ..+|.|..+.|++.+ |+.+ +.|.+-+......++..+...-..... .-...++. .+-+|++.+++--.
T Consensus 165 ~--ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a~n~Lq 234 (360)
T KOG0990|consen 165 A--TISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVALNYLQ 234 (360)
T ss_pred E--EeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHHHHHHH
Confidence 4 458999999999998 6653 356666766666777776665443211 11223333 34477777666433
No 378
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.4e-07 Score=99.92 Aligned_cols=153 Identities=22% Similarity=0.285 Sum_probs=101.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCe---------------------EEEEe--ccchhhhh-hcccHHHHHHHHHHh
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLR---------------------FISVK--GPELLNKY-IGASEQAVRDIFSKA 598 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~---------------------~i~i~--~~~l~~~~-~g~se~~i~~~f~~a 598 (799)
+..+||+||+|+||+++|.++|..+-.. +..+. +..--.+. ..-.-+.++++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 3469999999999999999999865221 22221 11000000 001234566666554
Q ss_pred Hh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 599 TA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 599 ~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
.. +...|++||++|.| .....|.||+.|+ ++..++++|.+|+.++.+-|.+++ |+ ..+.|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 32 33469999999998 4568899999998 566677777789999999999999 55 56789
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHH
Q 003743 675 DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADL 716 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di 716 (799)
++|+.++..+.+... +++ ..+...++..+.|-.+.-+
T Consensus 170 ~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 999998887777542 222 2223456677776554443
No 379
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.71 E-value=2.3e-07 Score=94.68 Aligned_cols=90 Identities=22% Similarity=0.346 Sum_probs=57.1
Q ss_pred CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC-------------CCccChhhcCCCCc
Q 003743 602 APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-------------PDLLDAALLRPGRL 668 (799)
Q Consensus 602 ~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~-------------~~~ld~al~r~gRf 668 (799)
-|.||||||++.| .-..+..|-+.|+ .+-.+++|+ +||+ |.-+++.++. |+
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE--S~iaPivif-AsNrG~~~irGt~d~~sPhGip~dllD--Rl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE--SPIAPIVIF-ASNRGMCTIRGTEDILSPHGIPPDLLD--RL 359 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc--CCCCceEEE-ecCCcceeecCCcCCCCCCCCCHHHhh--he
Confidence 3789999999988 2344445555554 233444444 5553 4447777777 65
Q ss_pred ceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHC
Q 003743 669 DRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT 708 (799)
Q Consensus 669 ~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~ 708 (799)
.+|..-+|+.++..+|++.+.+..++. .+..+..|+.+.
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 355666788999999999988766654 333345555543
No 380
>PRK08116 hypothetical protein; Validated
Probab=98.69 E-value=9.1e-08 Score=101.31 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=73.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHH----HHHHHHHHHHHhcCCcEEEEcccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR----QALSNFISEALDHAPSIVIFDNLD 330 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~----~~l~~~~~~a~~~~p~IL~IDEiD 330 (799)
+.+++|+||||||||+|+.++|+.+.... .++++++..++......... .....++... ....+|+|||+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg 188 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLG 188 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEeccc
Confidence 45799999999999999999999986432 55677776654332111110 1111233333 345699999995
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCC-Cc----cchhhhccCce---eEEEe
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSL-EK----IPQSLTSSGRF---DFHVQ 402 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~-~~----ld~aL~r~gRf---~~~i~ 402 (799)
.... . ......|.++++...... ..+|.|||.+ +. ++.++.+ |+ ...|.
T Consensus 189 ~e~~----------t---~~~~~~l~~iin~r~~~~--------~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~ 245 (268)
T PRK08116 189 AERD----------T---EWAREKVYNIIDSRYRKG--------LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVE 245 (268)
T ss_pred CCCC----------C---HHHHHHHHHHHHHHHHCC--------CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEE
Confidence 4310 0 133445556666543321 3466777763 33 4566776 64 33566
Q ss_pred ccCCCH
Q 003743 403 LPAPAA 408 (799)
Q Consensus 403 ~~~p~~ 408 (799)
++.++.
T Consensus 246 ~~g~d~ 251 (268)
T PRK08116 246 NEGKSY 251 (268)
T ss_pred eeCcCh
Confidence 666664
No 381
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.68 E-value=2.1e-07 Score=100.54 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=48.0
Q ss_pred CCC-CCCChHHHHHHHHHHhhccCCChhHHhhCCC-CCCCceeeecCCCCcHHHHHHHHHHhCCC-------eEEEEec
Q 003743 507 GWD-DVGGLTDIQNAIKEMIELPSKFPNIFAQAPL-RLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKG 576 (799)
Q Consensus 507 ~~~-~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~alA~~~~~-------~~i~i~~ 576 (799)
-|+ ++.|+++.+..+.+++.... .+. ..+.-++|+||||||||++|++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 355 89999999998888776432 111 23456899999999999999999999865 7888776
No 382
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=4.5e-07 Score=98.88 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=99.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCc------------------eeeEEEEEecccc-cccchhhHHHHHHHHHHH
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRL-SLEKGPIIRQALSNFISE 315 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~------------------~~~~~~~v~~s~l-~~~~~~~~~~~l~~~~~~ 315 (799)
+..+||+||+|+||+++|.++|+.+-.... ....+.++....- ..-....++.....+...
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 456999999999999999999999853210 0011222222110 001122233322222222
Q ss_pred HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccC
Q 003743 316 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 395 (799)
Q Consensus 316 a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~g 395 (799)
...+..-|++||++|.+.. ...+.|+..+++-.. .+++|.+|+.++.+.|.+++
T Consensus 104 ~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~---------~t~fiL~t~~~~~lLpTIrS-- 157 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTD---------------AAANALLKTLEEPPE---------NTWFFLACREPARLLATLRS-- 157 (334)
T ss_pred cccCCceEEEEcchHhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhChHHHHh--
Confidence 2234455999999999962 456677777776432 48899999999999999999
Q ss_pred ceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCC
Q 003743 396 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 396 Rf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~ 441 (799)
|.. .+.|++|+.++..+.+... ..++++....++..+.|-
T Consensus 158 RCq-~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~ 197 (334)
T PRK07993 158 RCR-LHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGA 197 (334)
T ss_pred ccc-cccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCC
Confidence 776 6899999999888877532 124555566666666663
No 383
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.67 E-value=2.5e-07 Score=100.99 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=93.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh-----hcccH-------HHHHHHHHHhHhcCCeEEE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASE-------QAVRDIFSKATAAAPCLLF 607 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~-----~g~se-------~~i~~~f~~a~~~~p~ILf 607 (799)
..+|||+|++||||+++|+++.... +.+|+.++|..+.... +|... ..-...|+.|.. .+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~g---GtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADG---GTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCC---CEEE
Confidence 3479999999999999999998765 4799999998653211 11110 011223555543 4999
Q ss_pred EcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCCCC-------ccChhhcCCCCcc-e
Q 003743 608 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPD-------LLDAALLRPGRLD-R 670 (799)
Q Consensus 608 iDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~~~-------~ld~al~r~gRf~-~ 670 (799)
||||+.| ...++..|+..++.-. . ...+-||++|+..- .+.+.|.. |+. .
T Consensus 99 Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~ 165 (329)
T TIGR02974 99 LDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFD 165 (329)
T ss_pred eCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhcch
Confidence 9999998 3456677777764321 1 12467777887531 23455555 663 2
Q ss_pred eeecCCCC--HHHHHHHHHHHHcc----CCCC--CcccHHHHHHHCC---CCcHHHHHHHHHHHHH
Q 003743 671 LLFCDFPS--PRERLDILKVISRK----LPLA--DDVDLEAIAHMTE---GFSGADLQALLSDAQL 725 (799)
Q Consensus 671 ~i~~~~p~--~~~r~~Il~~~~~~----~~~~--~~~~~~~la~~~~---g~sg~di~~~~~~a~~ 725 (799)
.|.+|+.. .+.+..+++.++.. .+.. ..++.+.+..... --+-+++++++..++.
T Consensus 166 ~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 166 VITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVY 231 (329)
T ss_pred hcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 44454443 23344444444432 2222 2345454444433 1223555555554443
No 384
>PRK08116 hypothetical protein; Validated
Probab=98.66 E-value=6e-08 Score=102.66 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=77.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhc----ccHHHHHHHHHHhHhcCCeEEEEcccccccC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIG----ASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g----~se~~i~~~f~~a~~~~p~ILfiDEid~l~~ 616 (799)
.+++|+|+||||||+||.++|+.+ +.+++.++.++++..+.. .......++++... ...+|+|||++....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCCC
Confidence 479999999999999999999975 788999998887665422 11122233444333 235999999965311
Q ss_pred CCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC-Cc----cChhhcCCCCc---ceeeecCCCCHHHHHHHHH
Q 003743 617 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP-DL----LDAALLRPGRL---DRLLFCDFPSPRERLDILK 687 (799)
Q Consensus 617 ~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~-~~----ld~al~r~gRf---~~~i~~~~p~~~~r~~Il~ 687 (799)
.+.....|...++....... .+|.|||.+ .. ++..+.+ |+ ...|.|+-|+. |..+.+
T Consensus 193 ---------t~~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 193 ---------TEWAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred ---------CHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHH
Confidence 23344455555554332322 345577765 33 4666666 64 34456655554 444443
No 385
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.66 E-value=4.5e-08 Score=96.05 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=67.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh-----hhcccH-------HHHHHHHHHhHhcCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASE-------QAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~-----~~g~se-------~~i~~~f~~a~~~~p~ILfi 608 (799)
.+|||+|++||||+.+|+++-+.. +.||+.++|+.+... .+|... ..-..+|+.|..+ +|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 579999999999999999999876 479999999876432 223211 1123677888776 9999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCC
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSR 654 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~ 654 (799)
|||+.| +..++..|+..|+.-. + .-.+-||++|+.
T Consensus 100 d~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhh-----------HHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 999999 4567777877775321 1 125778888875
No 386
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.66 E-value=7.6e-07 Score=104.56 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=63.3
Q ss_pred CEEEEEecCCC--CccchhhhccCcee---EEEeccC--C-CHHHHHHHHHH---Hhhhc--ccCCCHHHHHHHHhhcC-
Q 003743 374 PIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLPA--P-AASERKAILEH---EIQRR--SLECSDEILLDVASKCD- 439 (799)
Q Consensus 374 ~v~vI~ttn~~--~~ld~aL~r~gRf~---~~i~~~~--p-~~~er~~Il~~---~l~~~--~~~~~~~~l~~la~~~~- 439 (799)
++.+|+++|.. ..++|+|++ ||+ ..+.|+. | +.+.+..+++. .++.. ...++++.+..+.+...
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57889999874 578999999 888 6666543 2 44555555443 33333 23577887777664321
Q ss_pred --------CCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 440 --------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 440 --------g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
..+.++|..+++.|...|..+ ....++.+|+.+|+..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHHHHH
Confidence 134688999998885444222 2245778888776553
No 387
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=2e-07 Score=101.36 Aligned_cols=138 Identities=19% Similarity=0.268 Sum_probs=92.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCce-------------------eeEEEEEeccccc---------------
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------------------VAHIVFVCCSRLS--------------- 298 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-------------------~~~~~~v~~s~l~--------------- 298 (799)
..+..+||+||+|+||+++|+++|+.+...... ...+..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345679999999999999999999998643210 0112222211100
Q ss_pred ---ccc-----hhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 299 ---LEK-----GPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 299 ---~~~-----~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
+.. ....-+.++.+...+. ....-|++||++|.+.. ...+.|+..+++-..
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~-- 161 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEEPPP-- 161 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCc--
Confidence 000 0111234555544432 22345999999999962 455667777776433
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHH
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 417 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~ 417 (799)
.+++|.+|+.++.+.|.+++ |+. .+.|++|+.++..+.+..
T Consensus 162 -------~t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 -------GTVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -------CcEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHH
Confidence 48899999999999999999 874 899999999999888875
No 388
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=1.6e-07 Score=88.18 Aligned_cols=122 Identities=21% Similarity=0.270 Sum_probs=73.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
++.++|+||.|||||++++.+++.+. ....++++++.+.......... +.+.+.......+.+|||||++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc-
Confidence 35689999999999999999998765 1146777888775442211111 2222222222356799999998874
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCcc----chhhhccCceeEEEeccCCCHHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI----PQSLTSSGRFDFHVQLPAPAASE 410 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~l----d~aL~r~gRf~~~i~~~~p~~~e 410 (799)
.....+..+.|... ++.+|.|+.....+ ...+. ||+. .+++.+++..|
T Consensus 75 ---------------~~~~~lk~l~d~~~----------~~~ii~tgS~~~~l~~~~~~~l~--gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ---------------DWEDALKFLVDNGP----------NIKIILTGSSSSLLSKDIAESLA--GRVI-EIELYPLSFRE 126 (128)
T ss_pred ---------------cHHHHHHHHHHhcc----------CceEEEEccchHHHhhcccccCC--CeEE-EEEECCCCHHH
Confidence 34444555555331 24455544443222 23333 4876 78999998877
Q ss_pred H
Q 003743 411 R 411 (799)
Q Consensus 411 r 411 (799)
.
T Consensus 127 ~ 127 (128)
T PF13173_consen 127 F 127 (128)
T ss_pred h
Confidence 4
No 389
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.2e-08 Score=105.39 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=39.4
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~ 567 (799)
.+|.|+.|++..|+.+...... ..|+||+||||||||++|+-+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 4689999999999999765542 2489999999999999999887655
No 390
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=2.9e-07 Score=99.13 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=93.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCC-----------------------eEEEEeccchhhhhhcccHHHHHHHHHHh
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSL-----------------------RFISVKGPELLNKYIGASEQAVRDIFSKA 598 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~-----------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a 598 (799)
.+..+||+||.|+||+++|+++|..+-. .++.+.+.. .++.+ +-+.++++.+.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 3447999999999999999999986521 233333211 00111 234556555444
Q ss_pred H----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 599 T----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 599 ~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
. .+...|++||++|.+ .....|.||+.|+ ++..++++|.+|+.++.+-|.+++ |. ..+.|
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~ 164 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAM-----------NESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVV 164 (319)
T ss_pred hhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc-eeEeC
Confidence 2 244579999999998 4568899999998 677778888899999999999999 55 57899
Q ss_pred CCCCHHHHHHHHHH
Q 003743 675 DFPSPRERLDILKV 688 (799)
Q Consensus 675 ~~p~~~~r~~Il~~ 688 (799)
++|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988877754
No 391
>PRK15115 response regulator GlrR; Provisional
Probab=98.65 E-value=4.2e-07 Score=104.01 Aligned_cols=197 Identities=13% Similarity=0.219 Sum_probs=118.2
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 299 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~ 299 (799)
.+++.......+.+.+..+.. ...+++|+|++|||||++|+++........ .+++.++|..+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~-------------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~---~~f~~i~c~~~~~ 198 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ-------------SDVSVLINGQSGTGKEILAQAIHNASPRAS---KPFIAINCGALPE 198 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc-------------CCCeEEEEcCCcchHHHHHHHHHHhcCCCC---CCeEEEeCCCCCH
Confidence 456666666666665544332 234599999999999999999998765322 6789999988643
Q ss_pred cchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 003743 300 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 364 (799)
Q Consensus 300 ~~~~~~~~~l~~~~~~---------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~ 364 (799)
... .. .+|.. ......+.|||||||.|.. .....|+..++...-
T Consensus 199 ~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~~ 257 (444)
T PRK15115 199 QLL---ES---ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA---------------PLQVKLLRVLQERKV 257 (444)
T ss_pred HHH---HH---HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH---------------HHHHHHHHHHhhCCE
Confidence 211 11 12211 1123457999999999963 445556665553221
Q ss_pred c--cCCccCCCCEEEEEecCCCCccchhhhccCce---------eEEEeccCCCH--HHHHHHHHHHhhhc----c---c
Q 003743 365 K--RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRF---------DFHVQLPAPAA--SERKAILEHEIQRR----S---L 424 (799)
Q Consensus 365 ~--~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf---------~~~i~~~~p~~--~er~~Il~~~l~~~----~---~ 424 (799)
. ........++.+|+||+.. +...+ ..|+| ...|.+|+... ++...+++.++... + .
T Consensus 258 ~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~ 334 (444)
T PRK15115 258 RPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR 334 (444)
T ss_pred EeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCC
Confidence 0 0101111257888888752 22222 22333 23344444433 23444555555421 1 2
Q ss_pred CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 425 ~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
.++++++..|..+....+.++|++++++++..
T Consensus 335 ~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 335 AFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 47999999999998778999999999988754
No 392
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.65 E-value=4.1e-07 Score=104.49 Aligned_cols=200 Identities=15% Similarity=0.181 Sum_probs=121.7
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l 297 (799)
+..+++.......+.+.+..+.. ...++|++|++||||+++|+++....... ..+++.++|..+
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-------------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~~~i~c~~~ 205 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-------------SQASVLISGESGTGKELIARAIHYNSRRA---KGPFIKVNCAAL 205 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-------------CCcEEEEEcCCCccHHHHHHHHHHhCCCC---CCCeEEEECCCC
Confidence 34567777777777776655443 23569999999999999999998865422 267899999887
Q ss_pred cccchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 003743 298 SLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 362 (799)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~---------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~ 362 (799)
.... .. ..+|.. ......++|||||||.+.. .....|+..++..
T Consensus 206 ~~~~---~~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~---------------~~q~~L~~~l~~~ 264 (457)
T PRK11361 206 PESL---LE---SELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL---------------VLQAKLLRILQER 264 (457)
T ss_pred CHHH---HH---HHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH---------------HHHHHHHHHHhcC
Confidence 4321 11 111110 1113457999999999963 3455566655542
Q ss_pred c--cccCCccCCCCEEEEEecCCCC-------ccchhhhccCceeEEEeccCCCHHHH----HHHHHHHhhhc-------
Q 003743 363 G--EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQRR------- 422 (799)
Q Consensus 363 ~--~~~~~~~~~~~v~vI~ttn~~~-------~ld~aL~r~gRf~~~i~~~~p~~~er----~~Il~~~l~~~------- 422 (799)
. ..........++.+|+||+..- .+.+.+.. |+. .+.+..|...+| ..++..++...
T Consensus 265 ~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~ 341 (457)
T PRK11361 265 EFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRD 341 (457)
T ss_pred cEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCC
Confidence 2 1011111122477888887531 23333333 332 344444444443 34555444321
Q ss_pred ccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 423 SLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 423 ~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
...++++++..+..+....+.++|++++.+++..+
T Consensus 342 ~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 342 IIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred CCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 13589999999999888889999999999887543
No 393
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.64 E-value=2.4e-07 Score=106.67 Aligned_cols=201 Identities=15% Similarity=0.141 Sum_probs=128.3
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
..++|......++.+.+..... ...++++.|++||||+++++++....... ..+++.++|..+.
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~-------------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~~ 197 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR-------------SDITVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAIP 197 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC-------------cCCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCCC
Confidence 4577777777777777655332 23459999999999999999998875422 2678899998874
Q ss_pred ccchhhHHHHHHHHHH---------------HHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 003743 299 LEKGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 363 (799)
Q Consensus 299 ~~~~~~~~~~l~~~~~---------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~ 363 (799)
... ... .+|. ......++.||||||+.+.. .....|++.++...
T Consensus 198 ~~~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~---------------~~q~~ll~~l~~~~ 256 (463)
T TIGR01818 198 KDL---IES---ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL---------------DAQTRLLRVLADGE 256 (463)
T ss_pred HHH---HHH---HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH---------------HHHHHHHHHHhcCc
Confidence 321 111 1111 01123467899999999862 34455555554321
Q ss_pred --cccCCccCCCCEEEEEecCCC-C------ccchhhhccCcee-EEEeccCCC--HHHHHHHHHHHhhhc----c---c
Q 003743 364 --EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR----S---L 424 (799)
Q Consensus 364 --~~~~~~~~~~~v~vI~ttn~~-~------~ld~aL~r~gRf~-~~i~~~~p~--~~er~~Il~~~l~~~----~---~ 424 (799)
..+.......++.+|++|+.. + .+.+.|.. |+. ..|++|+.. .++...+++.++... + .
T Consensus 257 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~ 334 (463)
T TIGR01818 257 FYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPK 334 (463)
T ss_pred EEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCC
Confidence 101001111246677777652 1 23345554 544 467788877 467777777665422 2 3
Q ss_pred CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 003743 425 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 458 (799)
Q Consensus 425 ~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 458 (799)
.++++++..|..+....+.++|++++.+++..+-
T Consensus 335 ~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 335 LLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 5789999999998877788999999999886553
No 394
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.64 E-value=2.2e-07 Score=101.48 Aligned_cols=191 Identities=19% Similarity=0.202 Sum_probs=104.4
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh--
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-- 582 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~-- 582 (799)
++++.|.....+.+.+.+.... ....+|||+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3455665555555555444321 123479999999999999999998765 468999999876321
Q ss_pred ---hhcccH-------HHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------c
Q 003743 583 ---YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------L 643 (799)
Q Consensus 583 ---~~g~se-------~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~ 643 (799)
.+|... ......|..|.+ ..|||||++.|. ..++..|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~g---GtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADG---GTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhccCC---CeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 112110 001223444443 389999999984 446666666664321 1 1
Q ss_pred CcEEEEEecCCC-------CccChhhcCCCCcc-eeeecCCCCH--HHHHHHHHHHHc----cCCCC--CcccHHHHHHH
Q 003743 644 TGVFVFAATSRP-------DLLDAALLRPGRLD-RLLFCDFPSP--RERLDILKVISR----KLPLA--DDVDLEAIAHM 707 (799)
Q Consensus 644 ~~vlvi~ttn~~-------~~ld~al~r~gRf~-~~i~~~~p~~--~~r~~Il~~~~~----~~~~~--~~~~~~~la~~ 707 (799)
..+-||+||+.. ..+.+.|.. ||. ..|.+|+-.. +++..+++.++. ..+.. ..++.+.+...
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 136677777653 224455555 663 3455554421 233444454432 22221 23444444433
Q ss_pred CC-CC--cHHHHHHHHHHHHH
Q 003743 708 TE-GF--SGADLQALLSDAQL 725 (799)
Q Consensus 708 ~~-g~--sg~di~~~~~~a~~ 725 (799)
.. .+ +-+++++++..++.
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHH
Confidence 22 12 23566666655543
No 395
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.63 E-value=9.8e-08 Score=90.80 Aligned_cols=129 Identities=19% Similarity=0.393 Sum_probs=78.4
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccc
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 301 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~ 301 (799)
+|....++++.+++..+.. ...+|||+|+|||||+++|++++...... ..+++.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~-------------~~~pvli~GE~GtGK~~~A~~lh~~~~~~---~~~~~~~~~~~~~--- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-------------SSSPVLITGEPGTGKSLLARALHRYSGRA---NGPFIVIDCASLP--- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-------------SSS-EEEECCTTSSHHHHHHCCHHTTTTC---CS-CCCCCHHCTC---
T ss_pred CCCCHHHHHHHHHHHHHhC-------------CCCcEEEEcCCCCCHHHHHHHHHhhcCcc---CCCeEEechhhCc---
Confidence 3566778888888877654 34559999999999999999999876532 2455566777644
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEec
Q 003743 302 GPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA 381 (799)
Q Consensus 302 ~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~tt 381 (799)
.+++.. ..++.|||+|+|.+.. .....|...+...... ++.+|+++
T Consensus 62 --------~~~l~~---a~~gtL~l~~i~~L~~---------------~~Q~~L~~~l~~~~~~--------~~RlI~ss 107 (138)
T PF14532_consen 62 --------AELLEQ---AKGGTLYLKNIDRLSP---------------EAQRRLLDLLKRQERS--------NVRLIASS 107 (138)
T ss_dssp --------HHHHHH---CTTSEEEEECGCCS-H---------------HHHHHHHHHHHHCTTT--------TSEEEEEE
T ss_pred --------HHHHHH---cCCCEEEECChHHCCH---------------HHHHHHHHHHHhcCCC--------CeEEEEEe
Confidence 223333 3677999999999962 4555666666543211 23444444
Q ss_pred CC-CCc------cchhhhccCcee-EEEeccC
Q 003743 382 QS-LEK------IPQSLTSSGRFD-FHVQLPA 405 (799)
Q Consensus 382 n~-~~~------ld~aL~r~gRf~-~~i~~~~ 405 (799)
.. ++. +++.|.. |+. ..|.+|+
T Consensus 108 ~~~l~~l~~~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 108 SQDLEELVEEGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp CC-CCCHHHHSTHHHHHHH--HCSTCEEEE--
T ss_pred CCCHHHHhhccchhHHHHH--HhCCCEEeCCC
Confidence 43 433 4555555 554 3556554
No 396
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=9.9e-08 Score=104.43 Aligned_cols=195 Identities=22% Similarity=0.233 Sum_probs=112.7
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEeccchhh
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLN 581 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~~l~~ 581 (799)
..+++++|....-+.+.+.+... -+...+||++|++||||+.+|+++.... +.|||.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 34667777666656665555431 1234579999999999999999997543 67999999998753
Q ss_pred h-------------hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-------
Q 003743 582 K-------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE------- 641 (799)
Q Consensus 582 ~-------------~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~------- 641 (799)
. |.| ....-..+|+.|.++ .||+|||+.|.+ ..+..+++.|+.-.
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCC
Confidence 2 223 222334567777666 999999999953 46677888876522
Q ss_pred --ccCcEEEEEecCC-CC-ccCh--hhcCCCCcceeeecCCCCH--HHHHHHHH----HHHccCCCCCcccH-HHHHHHC
Q 003743 642 --VLTGVFVFAATSR-PD-LLDA--ALLRPGRLDRLLFCDFPSP--RERLDILK----VISRKLPLADDVDL-EAIAHMT 708 (799)
Q Consensus 642 --~~~~vlvi~ttn~-~~-~ld~--al~r~gRf~~~i~~~~p~~--~~r~~Il~----~~~~~~~~~~~~~~-~~la~~~ 708 (799)
....|.+|++|+. +. .+-. .+.++ |+...|.+|+-.+ +++..+++ .++++.+.+...+. +.+....
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 1224667777654 22 2333 34431 4444555554432 22223333 34455554432222 2222222
Q ss_pred C---CCcHHHHHHHHHHHHHHH
Q 003743 709 E---GFSGADLQALLSDAQLSA 727 (799)
Q Consensus 709 ~---g~sg~di~~~~~~a~~~a 727 (799)
. --+-+++++++..++..+
T Consensus 288 ~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 288 AYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hCCCCCcHHHHHHHHHHHHHHh
Confidence 1 113467777776665554
No 397
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=7.9e-07 Score=95.90 Aligned_cols=155 Identities=20% Similarity=0.243 Sum_probs=99.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCcee---------------eEEEEEe--ccccccc-chhhHHHHHHHHHHHH
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------------AHIVFVC--CSRLSLE-KGPIIRQALSNFISEA 316 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~---------------~~~~~v~--~s~l~~~-~~~~~~~~l~~~~~~a 316 (799)
+..+||+||+|+||+++|.++|+.+....... ..+..+. ...-... ......+.++++...+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 44699999999999999999999876332110 0122221 1110000 0111233455555544
Q ss_pred Hh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhh
Q 003743 317 LD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLT 392 (799)
Q Consensus 317 ~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~ 392 (799)
.. ...-|++||++|.+.. ...+.|+..+++-.. .+++|.+|+.++.+.|.++
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~---------~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEEPSP---------GRYLWLISAQPARLPATIR 161 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhCCCC---------CCeEEEEECChhhCchHHH
Confidence 32 2335999999999962 456667777776443 3778888899999999999
Q ss_pred ccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCC
Q 003743 393 SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 442 (799)
Q Consensus 393 r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s 442 (799)
+ |+. .+.|++|+.++..+.+.. .+ +++.....++..+.|-.
T Consensus 162 S--RCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p 202 (319)
T PRK08769 162 S--RCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHP 202 (319)
T ss_pred h--hhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCH
Confidence 9 876 789999999988877764 22 34444555666666643
No 398
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.62 E-value=2.3e-08 Score=99.71 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=32.6
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
|.+|+|.+..|..+.-.. . | +.|+||+||||||||++|+.+...|.
T Consensus 2 f~dI~GQe~aKrAL~iAA---a-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAA---A-----------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHH---H-----------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHH---c-----------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 678889887776543211 1 1 35899999999999999999998875
No 399
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.61 E-value=3.9e-07 Score=103.70 Aligned_cols=122 Identities=22% Similarity=0.331 Sum_probs=77.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCC----CeEEEEec------c----------chhh--------hhhcccHHHHHHH
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVKG------P----------ELLN--------KYIGASEQAVRDI 594 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~----~~~i~i~~------~----------~l~~--------~~~g~se~~i~~~ 594 (799)
..+++|+||||||||++++.++..+. -..+.+.. . -+.+ ..+|.....-...
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 35799999999999999999997652 11121111 0 0000 0122111111235
Q ss_pred HHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-----------ccCcEEEEEecCCCC-------
Q 003743 595 FSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD------- 656 (799)
Q Consensus 595 f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-----------~~~~vlvi~ttn~~~------- 656 (799)
+..|.++ +||+||++.+ ...++..|+..|+.-. ...++.+|+|+|...
T Consensus 290 l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~ 355 (506)
T PRK09862 290 ISLAHNG---VLFLDELPEF-----------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGN 355 (506)
T ss_pred hhhccCC---EEecCCchhC-----------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCC
Confidence 5566555 9999999886 3467777777663311 123588999999753
Q ss_pred --------------ccChhhcCCCCcceeeecCCCCHH
Q 003743 657 --------------LLDAALLRPGRLDRLLFCDFPSPR 680 (799)
Q Consensus 657 --------------~ld~al~r~gRf~~~i~~~~p~~~ 680 (799)
.+..+++. |||-.+.+++|+.+
T Consensus 356 ~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 356 HNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36778888 99999999988643
No 400
>PRK12377 putative replication protein; Provisional
Probab=98.61 E-value=1.4e-07 Score=98.11 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=46.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH--HHHHHHHHHHhcCCcEEEEcccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ--ALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~--~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
..+++|+||||||||+|+.++|+.+.... ..+++++..++.......... ....++... ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 35799999999999999999999987443 334556655543322111100 112233333 46679999999665
No 401
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=8.4e-07 Score=96.63 Aligned_cols=200 Identities=19% Similarity=0.239 Sum_probs=126.5
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
.....+.|.+..+..+.+++..-+. ...++.+.+.|-||||||.+..-+...+...... ...+++||-
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle-----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~ 214 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE-----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCT 214 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh-----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeec
Confidence 3456778888888888888876665 3467889999999999999998777665532221 356888887
Q ss_pred cccccchhhHHH----------------HHHHHHHH-HHhc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 003743 296 RLSLEKGPIIRQ----------------ALSNFISE-ALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 357 (799)
Q Consensus 296 ~l~~~~~~~~~~----------------~l~~~~~~-a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~ 357 (799)
.+..... .+.. .....|.. .... .+-|+++||+|.|..... ..+..|..
T Consensus 215 sl~~~~a-iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~lFe 281 (529)
T KOG2227|consen 215 SLTEASA-IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTLFE 281 (529)
T ss_pred cccchHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeeehh
Confidence 6443211 0100 11111111 1112 356899999999983221 12222222
Q ss_pred HHHHhccccCCccCCCCEEEEEecCCCCccchhhhc----cCceeEEEeccCCCHHHHHHHHHHHhhhcccC-CCHHHHH
Q 003743 358 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS----SGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILL 432 (799)
Q Consensus 358 ~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r----~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~-~~~~~l~ 432 (799)
+ ..+.. ..+++|+.+|..+.-|..|.| .+--+..+.|++|+.++..+|+...+...... +-+.+++
T Consensus 282 w-p~lp~--------sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie 352 (529)
T KOG2227|consen 282 W-PKLPN--------SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIE 352 (529)
T ss_pred c-ccCCc--------ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHH
Confidence 1 11211 258899999988765544443 12234578999999999999999888765543 3445688
Q ss_pred HHHhhcCCCChhhHHHHH
Q 003743 433 DVASKCDGYDAYDLEILV 450 (799)
Q Consensus 433 ~la~~~~g~s~~dl~~lv 450 (799)
.+|+...+.+| |++.++
T Consensus 353 ~~ArKvaa~SG-DlRkaL 369 (529)
T KOG2227|consen 353 LCARKVAAPSG-DLRKAL 369 (529)
T ss_pred HHHHHhccCch-hHHHHH
Confidence 88888888766 555443
No 402
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.60 E-value=3.7e-07 Score=106.73 Aligned_cols=192 Identities=22% Similarity=0.202 Sum_probs=106.3
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 582 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~ 582 (799)
..++.++|.....+.+.+.+.... ....+|||+|++|||||++|+++.... +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 456677777766666666554321 123479999999999999999999875 579999999876321
Q ss_pred h-----hcccHHH-------HHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-c----
Q 003743 583 Y-----IGASEQA-------VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-L---- 643 (799)
Q Consensus 583 ~-----~g~se~~-------i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-~---- 643 (799)
. +|..... -...|+.+. ..+||||||+.|. ...+..|+..++.-. . .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCce
Confidence 1 1111000 011233332 3499999999983 456677777764321 1 0
Q ss_pred --CcEEEEEecCCCC-c------cChhhcCCCCcc-eeeecCCCC--HHHHHHHHHHHHccC----CCCCcccHHHHHHH
Q 003743 644 --TGVFVFAATSRPD-L------LDAALLRPGRLD-RLLFCDFPS--PRERLDILKVISRKL----PLADDVDLEAIAHM 707 (799)
Q Consensus 644 --~~vlvi~ttn~~~-~------ld~al~r~gRf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~~~~~~~~la~~ 707 (799)
..+-+|++|+..- . +.+.|.. |+. ..|.+|+.. .+....|++.++... +....++.+.+...
T Consensus 328 ~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred EeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1366777776531 1 2223333 443 244555443 244445555554432 22223444444443
Q ss_pred CC---CCcHHHHHHHHHHHH
Q 003743 708 TE---GFSGADLQALLSDAQ 724 (799)
Q Consensus 708 ~~---g~sg~di~~~~~~a~ 724 (799)
.. --+-+++++++..|+
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTA 425 (534)
T ss_pred HhCCCCChHHHHHHHHHHHH
Confidence 33 123455555555544
No 403
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.60 E-value=2.1e-07 Score=106.43 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=88.7
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce----------
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------- 285 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~---------- 285 (799)
..|.++.|.+..++. +... ...+.+++|+||||||||++++.+++.+......
T Consensus 189 ~d~~dv~Gq~~~~~a----l~~a-------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s 251 (499)
T TIGR00368 189 LDLKDIKGQQHAKRA----LEIA-------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS 251 (499)
T ss_pred CCHHHhcCcHHHHhh----hhhh-------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence 367777776655332 2221 2245679999999999999999999866421100
Q ss_pred ------------eeEEEEEecccccccc-hhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHH
Q 003743 286 ------------VAHIVFVCCSRLSLEK-GPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 352 (799)
Q Consensus 286 ------------~~~~~~v~~s~l~~~~-~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~ 352 (799)
..+|...+++...... +|.... -...+. ....++|||||++.+.. ...
T Consensus 252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~-~pG~i~---lA~~GvLfLDEi~e~~~---------------~~~ 312 (499)
T TIGR00368 252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIP-LPGEIS---LAHNGVLFLDELPEFKR---------------SVL 312 (499)
T ss_pred chhhhccccccccCCccccccccchhhhhCCcccc-chhhhh---ccCCCeEecCChhhCCH---------------HHH
Confidence 0111111111100000 000000 000112 23457999999998752 566
Q ss_pred HHHHHHHHHhc----cccCCccCCCCEEEEEecCCC-----C------------------ccchhhhccCceeEEEeccC
Q 003743 353 KFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSL-----E------------------KIPQSLTSSGRFDFHVQLPA 405 (799)
Q Consensus 353 ~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~-----~------------------~ld~aL~r~gRf~~~i~~~~ 405 (799)
..|.+.|+... ..........++.+|+++|+- . .+...|++ ||+.++.++.
T Consensus 313 ~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 313 DALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred HHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 77777776432 111112223468999999962 1 47788888 9999999998
Q ss_pred CCHH
Q 003743 406 PAAS 409 (799)
Q Consensus 406 p~~~ 409 (799)
++..
T Consensus 391 ~~~~ 394 (499)
T TIGR00368 391 LPPE 394 (499)
T ss_pred CCHH
Confidence 8765
No 404
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.60 E-value=2.7e-07 Score=106.21 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=80.9
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 582 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~ 582 (799)
..|+++.|.....+.+.+.+.... ....+||++|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 457788887777666666554321 123479999999999999999998764 579999999876321
Q ss_pred -----hhcccH--------HHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-----
Q 003743 583 -----YIGASE--------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V----- 642 (799)
Q Consensus 583 -----~~g~se--------~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~----- 642 (799)
..|..+ ..-..+|+.|.++ .||||||+.|. ..++..|+..|+.-. .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCc
Confidence 122111 1122455555444 89999999983 456667777764321 1
Q ss_pred --cCcEEEEEecCCC
Q 003743 643 --LTGVFVFAATSRP 655 (799)
Q Consensus 643 --~~~vlvi~ttn~~ 655 (799)
.-.+-+|++|+..
T Consensus 344 ~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 344 PVPVDVRVVAATHCA 358 (526)
T ss_pred eeeecceEEeccCCC
Confidence 0124577777654
No 405
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=4.6e-07 Score=93.56 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=88.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc----------------------------------
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL---------------------------------- 299 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~---------------------------------- 299 (799)
...+++|+||.|+|||+|++.+.+.+..... ..+++.+.....
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKIS 95 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEE
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 3567999999999999999999998842211 111121110000
Q ss_pred -cchhhHHHHHHHHHHHHHhc-CCcEEEEccccccc-cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEE
Q 003743 300 -EKGPIIRQALSNFISEALDH-APSIVIFDNLDSII-SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIA 376 (799)
Q Consensus 300 -~~~~~~~~~l~~~~~~a~~~-~p~IL~IDEiD~l~-~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~ 376 (799)
.........+..++..+... ...||+|||++.+. .... ...+...|...++...... ++.
T Consensus 96 ~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~-------~~~ 158 (234)
T PF01637_consen 96 KDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----------DKDFLKSLRSLLDSLLSQQ-------NVS 158 (234)
T ss_dssp CTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----------THHHHHHHHHHHHH----T-------TEE
T ss_pred hcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----------hHHHHHHHHHHHhhccccC-------Cce
Confidence 00011223344444444332 34799999999997 2111 1255666666666633222 233
Q ss_pred EEEecCCCCc------cchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCC--CHHHHHHHHhhcCCCChhhH
Q 003743 377 FVASAQSLEK------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC--SDEILLDVASKCDGYDAYDL 446 (799)
Q Consensus 377 vI~ttn~~~~------ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~--~~~~l~~la~~~~g~s~~dl 446 (799)
+|.+...... -...+. +|+.. +.+++.+.++..+++...+... ..+ +++.++.+...+.|. |+-|
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT--HHHH
T ss_pred EEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCC-HHHH
Confidence 3333332111 112233 37775 9999999999999999987766 544 888899999998885 4444
No 406
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=3.3e-07 Score=99.57 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=89.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCc-------------------eeeEEEEEecccc---cccc-hhhHHHHH
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------------------LVAHIVFVCCSRL---SLEK-GPIIRQAL 309 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~-------------------~~~~~~~v~~s~l---~~~~-~~~~~~~l 309 (799)
..+..+||+||+|+|||++|+.+|+.+..... ....++++....- .+.. ....-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34557999999999999999999999863211 0122444443210 0100 00112335
Q ss_pred HHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC
Q 003743 310 SNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE 385 (799)
Q Consensus 310 ~~~~~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~ 385 (799)
+++...+.. ....|++||+++.+.. ...+.|+..++.... .+.+|.+|+.++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~~---------~~~~Ilvth~~~ 154 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPPP---------QVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCcC---------CCEEEEEeCChH
Confidence 555554432 3345999999999852 445566666766532 256777888888
Q ss_pred ccchhhhccCceeEEEeccCCCHHHHHHHHHH
Q 003743 386 KIPQSLTSSGRFDFHVQLPAPAASERKAILEH 417 (799)
Q Consensus 386 ~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~ 417 (799)
.+.+.+++ |+. .+.|++|+.++..+.+..
T Consensus 155 ~ll~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 99999998 765 789999999998877754
No 407
>PRK08181 transposase; Validated
Probab=98.57 E-value=1.4e-07 Score=99.46 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=51.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcc-cHHHHHHHHHHhHhcCCeEEEEcccccccC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~ILfiDEid~l~~ 616 (799)
.+++|+||||||||++|.+++.++ |..++.++..+++..+... .+....+.++.. ..+.+|+|||++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 479999999999999999999754 7788899988887654221 112233444443 3456999999987643
No 408
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.8e-06 Score=102.64 Aligned_cols=138 Identities=15% Similarity=0.171 Sum_probs=90.6
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc--
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-- 296 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~-- 296 (799)
..|+|.+++...|-+.|...-. .+... .+.-.+||.||.|+|||-+|+++|..+.... ..++.++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~----gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA----GLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc----ccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhhh
Confidence 5667777777777776643321 11111 4667899999999999999999999986433 4577788774
Q ss_pred ----cccc---chhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccC
Q 003743 297 ----LSLE---KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRK 367 (799)
Q Consensus 297 ----l~~~---~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~--~~~~ 367 (799)
+.+. +.|... ...+.+..+...-+||||||||..-+ .++..|+.++|... ...+
T Consensus 632 evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkAh~---------------~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 632 EVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKAHP---------------DVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred hhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhcCH---------------HHHHHHHHHHhcCccccCCC
Confidence 3222 222221 22333444445567999999998752 57777888888643 3333
Q ss_pred CccCCCCEEEEEecCC
Q 003743 368 SSCGIGPIAFVASAQS 383 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~ 383 (799)
......+++||+|+|.
T Consensus 695 r~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNV 710 (898)
T ss_pred cEeeccceEEEEeccc
Confidence 3455678999999875
No 409
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.55 E-value=5.4e-07 Score=93.61 Aligned_cols=73 Identities=14% Similarity=0.329 Sum_probs=47.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHH---HHHHHHHHHHHhcCCcEEEEcccccc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR---QALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~---~~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
.+++|+||||||||+|+.++|..+.... ..+++++..++......... .....++... ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 4799999999999999999999986433 45566666555432211110 1122333333 35779999999775
Q ss_pred c
Q 003743 333 I 333 (799)
Q Consensus 333 ~ 333 (799)
.
T Consensus 175 ~ 175 (244)
T PRK07952 175 T 175 (244)
T ss_pred C
Confidence 3
No 410
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.54 E-value=3.9e-07 Score=104.83 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=81.5
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHh-----------CCCeEEEE
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-----------CSLRFISV 574 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~-----------~~~~~i~i 574 (799)
..++++.|.....+.+.+.+.... ....+||++|++||||+.+|+++-.. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 346778887777666666654321 12347999999999999999999876 35799999
Q ss_pred eccchhhh-----hhcccHH--------HHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc
Q 003743 575 KGPELLNK-----YIGASEQ--------AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE 641 (799)
Q Consensus 575 ~~~~l~~~-----~~g~se~--------~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~ 641 (799)
||..+... ..|..+. .-..+|+.|.++ .||||||+.|. ..++..|+..++.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMP-----------LPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCC-----------HHHHHHHHhhhhcCe
Confidence 99876321 1221111 112355555444 89999999983 456777777775321
Q ss_pred --c-------cCcEEEEEecCCC
Q 003743 642 --V-------LTGVFVFAATSRP 655 (799)
Q Consensus 642 --~-------~~~vlvi~ttn~~ 655 (799)
+ .-.+-||++||..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred EEecCCCceeccceEEEEecCCC
Confidence 1 1135677777654
No 411
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.54 E-value=6.1e-07 Score=104.10 Aligned_cols=126 Identities=17% Similarity=0.288 Sum_probs=78.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 581 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~ 581 (799)
...|++++|.....+.+.+.+.... .....+||+|++||||+++|+++-... +.+|+.++|+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 3568888887665555544443211 123469999999999999999986654 46899999987633
Q ss_pred h-----hhcccH-------HHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCc--cc-----
Q 003743 582 K-----YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--EV----- 642 (799)
Q Consensus 582 ~-----~~g~se-------~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~--~~----- 642 (799)
. .+|... ..-..+|+.|..+ .||||||+.|. ..++..|+..+..- .+
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCc
Confidence 1 122111 1112345555443 89999999984 44566677666431 11
Q ss_pred --cCcEEEEEecCCC
Q 003743 643 --LTGVFVFAATSRP 655 (799)
Q Consensus 643 --~~~vlvi~ttn~~ 655 (799)
...+-||++|+.+
T Consensus 335 ~~~~~vRiI~st~~~ 349 (520)
T PRK10820 335 EVHVDVRVICATQKN 349 (520)
T ss_pred ceeeeeEEEEecCCC
Confidence 1235677777654
No 412
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.53 E-value=6.2e-07 Score=97.29 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=105.2
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEec---------
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG--------- 576 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~--------- 576 (799)
..+.-++|++.++..|--....| .-.++|+.|+.|||||+++++||..+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 34667889998888775432221 23589999999999999999999987321111121
Q ss_pred ----c-------------------chhhhhhcccHHH------HHHHHHH----------hHhcCCeEEEEcccccccCC
Q 003743 577 ----P-------------------ELLNKYIGASEQA------VRDIFSK----------ATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 577 ----~-------------------~l~~~~~g~se~~------i~~~f~~----------a~~~~p~ILfiDEid~l~~~ 617 (799)
. .+++.-.|.++.. +....+. |+++. .||+|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEeccccc---
Confidence 0 0111122444442 1222221 11221 49999999888
Q ss_pred CCCCCCchhhHHHHHHHhhccC---------c--cccCcEEEEEecCCCCc-cChhhcCCCCcceeeecCCC-CHHHHHH
Q 003743 618 RGHDNTGVTDRVVNQFLTELDG---------V--EVLTGVFVFAATSRPDL-LDAALLRPGRLDRLLFCDFP-SPRERLD 684 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~---------~--~~~~~vlvi~ttn~~~~-ld~al~r~gRf~~~i~~~~p-~~~~r~~ 684 (799)
.+.+++.||..+.. + ...-++++|||+|.-+- |-|.|+. ||...+.+..| +.++|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 57889999887743 1 12236899998886533 8899999 99999988766 6899999
Q ss_pred HHHHHHcc
Q 003743 685 ILKVISRK 692 (799)
Q Consensus 685 Il~~~~~~ 692 (799)
|.+..+..
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 99887664
No 413
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.53 E-value=3.6e-06 Score=86.43 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=79.6
Q ss_pred CeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe---------cCC--CCccChhhcCCCCccee
Q 003743 603 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA---------TSR--PDLLDAALLRPGRLDRL 671 (799)
Q Consensus 603 p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t---------tn~--~~~ld~al~r~gRf~~~ 671 (799)
|.||||||+|.|- -..++-|-+.++ ....++++++| ||. |.-++-.|+. |+ .+
T Consensus 289 pGVLFIDEvHMLD-----------IEcFsFlNrAlE--~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lI 352 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD-----------IECFSFLNRALE--NDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LI 352 (454)
T ss_pred cceEEEeeehhhh-----------hHHHHHHHHHhh--hccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-he
Confidence 6788999988872 222233333332 22334444432 343 3447777776 55 46
Q ss_pred eecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHH
Q 003743 672 LFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDAL 750 (799)
Q Consensus 672 i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~ 750 (799)
|...||+.++..+||+.++.+..+. .+-.++.|..+...-+-+..-+++..|.+.+.++.- ..+..+|
T Consensus 353 I~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~-----------~~v~~~d 421 (454)
T KOG2680|consen 353 ISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG-----------KVVEVDD 421 (454)
T ss_pred eecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC-----------ceeehhH
Confidence 6778999999999999998876554 233356666665545555555677777766666632 3677788
Q ss_pred HHHHHhh
Q 003743 751 LKSIASK 757 (799)
Q Consensus 751 l~~a~~~ 757 (799)
++.+..-
T Consensus 422 i~r~y~L 428 (454)
T KOG2680|consen 422 IERVYRL 428 (454)
T ss_pred HHHHHHH
Confidence 8777653
No 414
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.3e-06 Score=94.11 Aligned_cols=133 Identities=14% Similarity=0.226 Sum_probs=89.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCce-----------------eeEEEEEecccccccchhhHHHHHHHHHHHHH
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL 317 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~-----------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~ 317 (799)
+..+||+||.|+||+++|+++|+.+...... ...+..+.... .+. ...-+.++.+...+.
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHHHHh
Confidence 4569999999999999999999988632110 01223332211 000 011123444433332
Q ss_pred ----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhc
Q 003743 318 ----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS 393 (799)
Q Consensus 318 ----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r 393 (799)
.+..-|++||++|.+.. ...+.|+..+++-.. .+++|..|+.++.+.|.+++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~---------~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEEPAP---------NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred hCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhChHHHHh
Confidence 23345999999999962 456677777776432 48899999999999999999
Q ss_pred cCceeEEEeccCCCHHHHHHHHHH
Q 003743 394 SGRFDFHVQLPAPAASERKAILEH 417 (799)
Q Consensus 394 ~gRf~~~i~~~~p~~~er~~Il~~ 417 (799)
|.. .+.|++|+.++..+.+..
T Consensus 158 --RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 --RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred --cce-eEeCCCCCHHHHHHHHHH
Confidence 876 889999999998887754
No 415
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.52 E-value=8.3e-07 Score=99.00 Aligned_cols=186 Identities=22% Similarity=0.282 Sum_probs=109.4
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh--
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-- 582 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~-- 582 (799)
...++|.....+.+...+.... ....+||++|++||||..+|++|-... +.|||.+||..+-..
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 4556666666666665554221 123479999999999999999998876 469999999875321
Q ss_pred ---hhcccH-------HHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--cc-------
Q 003743 583 ---YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL------- 643 (799)
Q Consensus 583 ---~~g~se-------~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~~------- 643 (799)
.+|..+ ..-...|+.|.++ .||||||..+ +-.++..||..|..-. +.
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 222111 1122466666665 9999999988 4567778888775321 11
Q ss_pred CcEEEEEecCCCCccChhhcCCCCcc-------eeeecCCCCHHHHH----HHHH----HHHccCCC-CCcccHHHHHHH
Q 003743 644 TGVFVFAATSRPDLLDAALLRPGRLD-------RLLFCDFPSPRERL----DILK----VISRKLPL-ADDVDLEAIAHM 707 (799)
Q Consensus 644 ~~vlvi~ttn~~~~ld~al~r~gRf~-------~~i~~~~p~~~~r~----~Il~----~~~~~~~~-~~~~~~~~la~~ 707 (799)
-.|=||++||.. |...+.. |+|- .++.+..|...+|. .+++ ......+. ...++.+.++..
T Consensus 275 vdvRiIaaT~~d--L~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 275 VDVRIIAATNRD--LEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eeeEEEeecCcC--HHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 137799999873 2222222 3433 24455566555544 2333 33444433 255666666665
Q ss_pred CCCCcHHHHHHHHH
Q 003743 708 TEGFSGADLQALLS 721 (799)
Q Consensus 708 ~~g~sg~di~~~~~ 721 (799)
..--=++.++.+-+
T Consensus 352 ~~y~WPGNVREL~N 365 (464)
T COG2204 352 LAYDWPGNVRELEN 365 (464)
T ss_pred HhCCCChHHHHHHH
Confidence 54111444444433
No 416
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.51 E-value=9.8e-07 Score=103.30 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=41.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 568 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~ 568 (799)
++..|+++.|++++++.|...+.. +.+++|+||||||||+++++++..+.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 346799999999999988776652 13799999999999999999998774
No 417
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=4e-07 Score=98.89 Aligned_cols=131 Identities=22% Similarity=0.227 Sum_probs=91.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHhCCC-------------------------eEEEEeccchhhhhhc-----ccHHH
Q 003743 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------------------RFISVKGPELLNKYIG-----ASEQA 590 (799)
Q Consensus 541 ~~~~~vLL~GppGtGKT~la~alA~~~~~-------------------------~~i~i~~~~l~~~~~g-----~se~~ 590 (799)
+.+..+||+||+|+|||++|+.+|+.+.. .|+.+++..-. ..-| -.-+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 34457999999999999999999987531 24444432100 0001 12456
Q ss_pred HHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCC
Q 003743 591 VRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPG 666 (799)
Q Consensus 591 i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~g 666 (799)
++++.+.+.. +...|++||+++.+ .....+.+++.|+... ..+.+|.+|+.++.+.+.+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--
Confidence 7777766643 44569999999998 4567788888887543 345566688889999999998
Q ss_pred CcceeeecCCCCHHHHHHHHHH
Q 003743 667 RLDRLLFCDFPSPRERLDILKV 688 (799)
Q Consensus 667 Rf~~~i~~~~p~~~~r~~Il~~ 688 (799)
|. ..+.|++|+.++..+.++.
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 44 5678999999888777754
No 418
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.50 E-value=4.4e-06 Score=96.23 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=54.1
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhh------c----------------------cc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI------G----------------------AS 587 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~------g----------------------~s 587 (799)
|+.+...+|+.||||+|||+++..++... |-+.++++..+-...+. | ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56667789999999999999998777643 55677776554321110 1 01
Q ss_pred HHHHHHHHHHhHhcCCeEEEEccccccc
Q 003743 588 EQAVRDIFSKATAAAPCLLFFDEFDSIA 615 (799)
Q Consensus 588 e~~i~~~f~~a~~~~p~ILfiDEid~l~ 615 (799)
+..+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4456667777777889999999988774
No 419
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.49 E-value=7.5e-07 Score=103.33 Aligned_cols=192 Identities=24% Similarity=0.240 Sum_probs=106.2
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh--
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-- 582 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~-- 582 (799)
..+++|.....+.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 3455665555555555554321 123479999999999999999999875 579999999876321
Q ss_pred ---hhcccHH-------HHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------c
Q 003743 583 ---YIGASEQ-------AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------L 643 (799)
Q Consensus 583 ---~~g~se~-------~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~ 643 (799)
.+|.... .-...|+.|.+ ..|||||||.|. ..++..|+..++.-. . .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 1221100 01123555543 389999999984 456667777664321 1 1
Q ss_pred CcEEEEEecCCCCc-------cChhhcCCCCcceeeecCCCCHHHH----HHHHHHHHccC----CC-CCcccHHH---H
Q 003743 644 TGVFVFAATSRPDL-------LDAALLRPGRLDRLLFCDFPSPRER----LDILKVISRKL----PL-ADDVDLEA---I 704 (799)
Q Consensus 644 ~~vlvi~ttn~~~~-------ld~al~r~gRf~~~i~~~~p~~~~r----~~Il~~~~~~~----~~-~~~~~~~~---l 704 (799)
..+-||++|+..-. +.+.|.. |+. .+.+..|...+| ..++++++.+. +. ...++.+. |
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 24677788876421 2333333 333 223444444443 33444443322 21 12344443 4
Q ss_pred HHHCCCCcHHHHHHHHHHHHHHH
Q 003743 705 AHMTEGFSGADLQALLSDAQLSA 727 (799)
Q Consensus 705 a~~~~g~sg~di~~~~~~a~~~a 727 (799)
..+.---+-+++++++..|+..+
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhc
Confidence 44332233577777777666544
No 420
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.46 E-value=1.1e-06 Score=100.30 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=116.0
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 299 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~ 299 (799)
.+++.......+.+.+..+- +....++++|++||||+++++++....... ..+++.++|+.+..
T Consensus 140 ~lig~s~~~~~~~~~i~~~~-------------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~---~~~~i~~~c~~~~~ 203 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA-------------PSEATVLIHGDSGTGKELVARAIHASSARS---EKPLVTLNCAALNE 203 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc-------------CCCCeEEEEecCCCCHHHHHHHHHHcCCCC---CCCeeeeeCCCCCH
Confidence 35566666666666553332 234669999999999999999998765422 26899999987642
Q ss_pred cchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 003743 300 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 364 (799)
Q Consensus 300 ~~~~~~~~~l~~~~~~---------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~ 364 (799)
.. ... .+|.. .....+++|||||||.+.. .....|+..++...-
T Consensus 204 ~~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~---------------~~q~~l~~~l~~~~~ 262 (441)
T PRK10365 204 SL---LES---ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP---------------MMQVRLLRAIQEREV 262 (441)
T ss_pred HH---HHH---HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH---------------HHHHHHHHHHccCcE
Confidence 21 111 11110 1123567999999999963 334455555543210
Q ss_pred --ccCCccCCCCEEEEEecCCCC-------ccchhhhccCce-eEEEeccCCCH--HHHHHHHHHHhhhc----c---cC
Q 003743 365 --KRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQRR----S---LE 425 (799)
Q Consensus 365 --~~~~~~~~~~v~vI~ttn~~~-------~ld~aL~r~gRf-~~~i~~~~p~~--~er~~Il~~~l~~~----~---~~ 425 (799)
.........++.+|++|+..- .+.+.|.. |+ ...|.+|+... ++...+++.++... + ..
T Consensus 263 ~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~--~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (441)
T PRK10365 263 QRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY--RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG 340 (441)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--HhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCC
Confidence 000001112356777765521 12222222 22 23445555543 24555666665431 1 34
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 426 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 426 ~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
++++++..+..+....+.++|++++++++..
T Consensus 341 ~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 341 FTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred cCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999888777889999999887754
No 421
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.45 E-value=1.7e-06 Score=103.11 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=95.5
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHH--------hhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC-------CeEEE
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIF--------AQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFIS 573 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~-------~~~i~ 573 (799)
..|.|.+.+|+.+.-.+-.......-. ....++...+|||.|.||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 456788888888755443221110000 002234556899999999999999999998653 23333
Q ss_pred Eeccchhhhhhcc-cHHH--HHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---------
Q 003743 574 VKGPELLNKYIGA-SEQA--VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------- 641 (799)
Q Consensus 574 i~~~~l~~~~~g~-se~~--i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--------- 641 (799)
+.+..... +.+. +... -...+..|.. .+++|||++++. ...+..|+..|+.-.
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvlAdg---GtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVLANG---GVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEEcCC---CeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcc
Confidence 33322211 0000 0000 0011222222 399999999983 445566776664321
Q ss_pred --ccCcEEEEEecCCCC-----------c--cChhhcCCCCcceee-ecCCCCHHHHHHHHHHHH
Q 003743 642 --VLTGVFVFAATSRPD-----------L--LDAALLRPGRLDRLL-FCDFPSPRERLDILKVIS 690 (799)
Q Consensus 642 --~~~~vlvi~ttn~~~-----------~--ld~al~r~gRf~~~i-~~~~p~~~~r~~Il~~~~ 690 (799)
...++-||||+|... . +++++++ |||.++ ..+.|+.+.=..|.++++
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 124688999999741 2 7799999 999765 567777665455544443
No 422
>PRK08181 transposase; Validated
Probab=98.45 E-value=3.9e-07 Score=96.05 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=48.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH-HHHHHHHHHHHHhcCCcEEEEcccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~-~~~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
.+.+++|+||||||||+|+.+++..+...+ ..+++++..++........ .......+... ..+.+|+|||++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 356799999999999999999998875433 4456666655443221110 01122233333 45679999999876
Q ss_pred c
Q 003743 333 I 333 (799)
Q Consensus 333 ~ 333 (799)
.
T Consensus 180 ~ 180 (269)
T PRK08181 180 T 180 (269)
T ss_pred c
Confidence 4
No 423
>PF05729 NACHT: NACHT domain
Probab=98.45 E-value=1.9e-06 Score=83.97 Aligned_cols=147 Identities=16% Similarity=0.244 Sum_probs=80.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCcee---eEEEEEecccccccchh-hHHHHHHH-----------HH-HHHHhc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---AHIVFVCCSRLSLEKGP-IIRQALSN-----------FI-SEALDH 319 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~---~~~~~v~~s~l~~~~~~-~~~~~l~~-----------~~-~~a~~~ 319 (799)
|-++|+|+||+|||++++.++..+....... ..++++.+......... .+...+.. .+ ..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 3589999999999999999998887543221 23444555443332211 11111111 11 112234
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC--ccchhhhccCce
Q 003743 320 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRF 397 (799)
Q Consensus 320 ~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~--~ld~aL~r~gRf 397 (799)
.+.+|+||.+|.+...... .........+..++...... .+-++.|++... .+...+..
T Consensus 81 ~~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~~--------~~~liit~r~~~~~~~~~~~~~---- 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALPP--------GVKLIITSRPRAFPDLRRRLKQ---- 141 (166)
T ss_pred CceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccCC--------CCeEEEEEcCChHHHHHHhcCC----
Confidence 5678999999999732111 11113344444444431111 133444443322 22222222
Q ss_pred eEEEeccCCCHHHHHHHHHHHhhh
Q 003743 398 DFHVQLPAPAASERKAILEHEIQR 421 (799)
Q Consensus 398 ~~~i~~~~p~~~er~~Il~~~l~~ 421 (799)
...+.+++.+.+++.++++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 146899999999999999988764
No 424
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.45 E-value=3.5e-06 Score=96.73 Aligned_cols=205 Identities=15% Similarity=0.214 Sum_probs=110.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEE-eccchh-
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV-KGPELL- 580 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i-~~~~l~- 580 (799)
+.+...+++.....-.+.++.++.... .+..+.+-+||+||||||||+++++||++++..+.+- ++..+.
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE 84 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc
Confidence 344556666655544455555444211 1112334578899999999999999999999888764 332211
Q ss_pred -----hhhhcccH---------HHHHHH-HHHhHh-----------cCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 581 -----NKYIGASE---------QAVRDI-FSKATA-----------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 581 -----~~~~g~se---------~~i~~~-f~~a~~-----------~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
..|.+... ..+.++ +..++. ..+.||+|||+=.++.. . ..++.+.|.
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~-~~~f~~~L~ 157 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------D-TSRFREALR 157 (519)
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------h-HHHHHHHHH
Confidence 11111110 112222 222221 24679999998765432 1 144444455
Q ss_pred hhccCccccCcEEEEEe-cC------CCC--------ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC------
Q 003743 635 TELDGVEVLTGVFVFAA-TS------RPD--------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL------ 693 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~t-tn------~~~--------~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~------ 693 (799)
..+..-... +++||.| +. ... .+.+.++.-.++ ..|.|.+-...-..+-|+.++...
T Consensus 158 ~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~ 235 (519)
T PF03215_consen 158 QYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSG 235 (519)
T ss_pred HHHHcCCCC-CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcC
Confidence 455421111 6666555 11 111 245566542233 567888877766666666655432
Q ss_pred --CCCCccc-HHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 003743 694 --PLADDVD-LEAIAHMTEGFSGADLQALLSDAQLSAV 728 (799)
Q Consensus 694 --~~~~~~~-~~~la~~~~g~sg~di~~~~~~a~~~a~ 728 (799)
......+ ++.|+..+ .|||+.+++.-+..+.
T Consensus 236 ~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 236 KNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred CccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 1111122 45555544 4799999887777665
No 425
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.44 E-value=4.5e-07 Score=94.22 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=51.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcc---cHHHHHHHHHHhHhcCCeEEEEccccccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIA 615 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~---se~~i~~~f~~a~~~~p~ILfiDEid~l~ 615 (799)
.+++|+|+||||||+++.++|..+ +..++.++.+++.....+. .......+++... .+++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 379999999999999999999987 7788999998887644321 1122334444433 46799999998763
No 426
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.44 E-value=2e-06 Score=103.63 Aligned_cols=193 Identities=23% Similarity=0.304 Sum_probs=107.4
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh-
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK- 582 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~- 582 (799)
.+.++.|.....+.+.+.+.... ....+||++|++|||||++|+++.... +.+|+.++|..+...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 46677787766666665555321 123479999999999999999998765 579999999875321
Q ss_pred ----hhcc--------cHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c------
Q 003743 583 ----YIGA--------SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V------ 642 (799)
Q Consensus 583 ----~~g~--------se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~------ 642 (799)
.+|. ... ....|+.|.. .+||||||+.+. ..++..|+..++.-. .
T Consensus 443 ~~~~lfg~~~~~~~g~~~~-~~g~le~a~~---GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQ-RIGRFELADK---SSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred hhhhhcCcccccccccccc-hhhHHHhcCC---CeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 1221 111 1234555443 499999999983 456667777664321 1
Q ss_pred -cCcEEEEEecCCCC--ccChhhcCCC---CcceeeecCCCCHHHHH----HHHHHHHccC----CCC-CcccH---HHH
Q 003743 643 -LTGVFVFAATSRPD--LLDAALLRPG---RLDRLLFCDFPSPRERL----DILKVISRKL----PLA-DDVDL---EAI 704 (799)
Q Consensus 643 -~~~vlvi~ttn~~~--~ld~al~r~g---Rf~~~i~~~~p~~~~r~----~Il~~~~~~~----~~~-~~~~~---~~l 704 (799)
...+-+|++|+..- .+.....++. |+. .+.+..|...+|. .+++.++.+. +.. ..+.. ..|
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 12466777887642 1222212110 332 2344555554443 3444443322 211 12333 344
Q ss_pred HHHCCCCcHHHHHHHHHHHHHH
Q 003743 705 AHMTEGFSGADLQALLSDAQLS 726 (799)
Q Consensus 705 a~~~~g~sg~di~~~~~~a~~~ 726 (799)
..+.---+-+++++++..|+..
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHh
Confidence 4333223347777777666543
No 427
>PRK12377 putative replication protein; Provisional
Probab=98.43 E-value=3.1e-07 Score=95.64 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=49.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhccc--HHHHHHHHHHhHhcCCeEEEEcccccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS--EQAVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~s--e~~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
.+++|+||||||||++|.|+|+.+ +..++.++.+++........ ......+++.. ....+|+|||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 489999999999999999999877 67788888888766432110 01122334333 34569999999765
No 428
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.42 E-value=6.9e-07 Score=96.96 Aligned_cols=70 Identities=21% Similarity=0.361 Sum_probs=49.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcc---cHHHHHHHHHHhHhcCCeEEEEccccccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIA 615 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~---se~~i~~~f~~a~~~~p~ILfiDEid~l~ 615 (799)
.+++|+||||||||+||.|+|+++ +..++.++..+++...... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 589999999999999999999976 7889999998887644221 1111112233332 34699999998763
No 429
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.40 E-value=2.5e-06 Score=92.72 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=104.1
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
-+|.-++|.+..+.-+.-. .+ .|.-.++|+-|+.|||||+++|+||..|....... -+-++|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~---av------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~--gc~f~cd 76 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLN---AV------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI--GCPFNCD 76 (423)
T ss_pred cchhhhcCchHHHHHHhhh---hc------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec--CCCCCCC
Confidence 3456667777655433221 11 24456799999999999999999999987322110 0001110
Q ss_pred c----------------------------ccccchhhHHHH------HHHHHHH---------HHhcCCcEEEEcccccc
Q 003743 296 R----------------------------LSLEKGPIIRQA------LSNFISE---------ALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 296 ~----------------------------l~~~~~~~~~~~------l~~~~~~---------a~~~~p~IL~IDEiD~l 332 (799)
- +.....+.+.++ +...+.. +.....+||++||+..|
T Consensus 77 P~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL 156 (423)
T COG1239 77 PDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL 156 (423)
T ss_pred CCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc
Confidence 0 011111222221 1111110 11234679999999887
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHh-c---cccCCccCCCCEEEEEecCCC-CccchhhhccCceeEEEeccCCC
Q 003743 333 ISSSSDPEGSQPSTSVIALTKFLVDIMDEY-G---EKRKSSCGIGPIAFVASAQSL-EKIPQSLTSSGRFDFHVQLPAPA 407 (799)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~-~---~~~~~~~~~~~v~vI~ttn~~-~~ld~aL~r~gRf~~~i~~~~p~ 407 (799)
.. .+...|++.+..- . ..+-.+...-++++|+|+|+- ..|-|.|+. ||...|.+..|.
T Consensus 157 ~d---------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~ 219 (423)
T COG1239 157 DD---------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPL 219 (423)
T ss_pred cH---------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCC
Confidence 41 6777777777652 1 111123334579999999995 468899999 999999887765
Q ss_pred -HHHHHHHHHHHhhh
Q 003743 408 -ASERKAILEHEIQR 421 (799)
Q Consensus 408 -~~er~~Il~~~l~~ 421 (799)
.+++.+|.++-+..
T Consensus 220 ~~~~rv~Ii~r~~~f 234 (423)
T COG1239 220 DLEERVEIIRRRLAF 234 (423)
T ss_pred CHHHHHHHHHHHHHh
Confidence 68899999876654
No 430
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.39 E-value=2.2e-06 Score=93.11 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=47.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH---HHHHHHHHHHHHhcCCcEEEEcccccc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII---RQALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~---~~~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
.+++||||||||||+|+.++|+++-... ..+++++..++........ .......+... ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 6799999999999999999999986443 4567777666533221100 00011112332 35579999999665
Q ss_pred c
Q 003743 333 I 333 (799)
Q Consensus 333 ~ 333 (799)
.
T Consensus 259 ~ 259 (329)
T PRK06835 259 K 259 (329)
T ss_pred C
Confidence 3
No 431
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.39 E-value=1.4e-06 Score=90.03 Aligned_cols=162 Identities=23% Similarity=0.338 Sum_probs=87.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC---eEEEEeccc-h----hhhh-------------h-----------------
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL---RFISVKGPE-L----LNKY-------------I----------------- 584 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~---~~i~i~~~~-l----~~~~-------------~----------------- 584 (799)
...++++||.|+|||++++.+.....- ..+.+.... . .... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 357999999999999999999998832 122221110 0 0000 0
Q ss_pred cccHHHHHHHHHHhHhc-CCeEEEEccccccc-CCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc----
Q 003743 585 GASEQAVRDIFSKATAA-APCLLFFDEFDSIA-PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL---- 658 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~-~p~ILfiDEid~l~-~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l---- 658 (799)
......+..+++..... ...||+|||++.+. ... ........|...++......++.+|.++......
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 11234456666665443 34799999999997 221 1245556666666553334444433333332221
Q ss_pred --ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC-CC-CCcccHHHHHHHCCCCcH
Q 003743 659 --DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-PL-ADDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 659 --d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~-~~-~~~~~~~~la~~~~g~sg 713 (799)
...+.. |+.. +.+++.+.++..++++..++.. .+ ..+.+++.+...+.|..+
T Consensus 174 ~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 174 DDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp -TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred cccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 122333 7777 8999999999999999877665 11 256667888888877543
No 432
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.39 E-value=1.1e-06 Score=104.48 Aligned_cols=148 Identities=16% Similarity=0.086 Sum_probs=85.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhccCC-ceeeEEEEEecccccccc---hhhHHHHHHHHHHHHHhcCCcEEEEc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFVCCSRLSLEK---GPIIRQALSNFISEALDHAPSIVIFD 327 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~~~~-~~~~~~~~v~~s~l~~~~---~~~~~~~l~~~~~~a~~~~p~IL~ID 327 (799)
+...-||||+|+||||||.+++++++...... ....++..++|....... .+.+. +. -..+.....++++||
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~--le--~GaLvlAdgGtL~ID 564 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAM--IQ--PGAVVLANGGVCCID 564 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCccc--cc--CCcEEEcCCCeEEec
Confidence 34455899999999999999999998654211 000122223332211100 00000 00 000111345799999
Q ss_pred cccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCCCC-------------ccchh
Q 003743 328 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-------------KIPQS 390 (799)
Q Consensus 328 EiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~~-------------~ld~a 390 (799)
|+|.+.. .....|.+.|+.-. ..+....-..++.||||+|+.. .++++
T Consensus 565 Eidkms~---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~ 629 (915)
T PTZ00111 565 ELDKCHN---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPS 629 (915)
T ss_pred chhhCCH---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChH
Confidence 9999852 45566777776432 1111112223689999999842 36799
Q ss_pred hhccCceeEEE-eccCCCHHHHHHHHHHHhh
Q 003743 391 LTSSGRFDFHV-QLPAPAASERKAILEHEIQ 420 (799)
Q Consensus 391 L~r~gRf~~~i-~~~~p~~~er~~Il~~~l~ 420 (799)
|++ ||+..+ .++.|+.+.=..|..+.+.
T Consensus 630 LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 630 LFT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred Hhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 999 998664 5677777665566665554
No 433
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.38 E-value=1.4e-06 Score=95.84 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=114.2
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhh--
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-- 581 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~-- 581 (799)
....|+|.......+.+.+..... ...+||+.|.+||||..+|++|-+.. +.|||.+||+.+-.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH
Confidence 455677777666666666654322 23479999999999999999999877 57999999987632
Q ss_pred ---hhhcccHHH-------HHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--cc--C---
Q 003743 582 ---KYIGASEQA-------VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL--T--- 644 (799)
Q Consensus 582 ---~~~g~se~~-------i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~~--~--- 644 (799)
..+|.-... -+.-|+.|.++ -||+|||..| +-.++..||..|..-+ +- +
T Consensus 290 lESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 290 LESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCcee
Confidence 122221111 12334444444 8999999887 3456777877765322 11 1
Q ss_pred --cEEEEEecCCCCccChhhcCCCCcce-------eeecCCCCHHHHH--------HHHHHHHccCCC-CCcccHHHHHH
Q 003743 645 --GVFVFAATSRPDLLDAALLRPGRLDR-------LLFCDFPSPRERL--------DILKVISRKLPL-ADDVDLEAIAH 706 (799)
Q Consensus 645 --~vlvi~ttn~~~~ld~al~r~gRf~~-------~i~~~~p~~~~r~--------~Il~~~~~~~~~-~~~~~~~~la~ 706 (799)
.|-||++||+ +|..++.. |+|-. ++.+..|...+|. .+++.+.++.+. .-.++.+.+..
T Consensus 356 kVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 3789999997 34444443 45431 1222234333332 222333334444 22334444443
Q ss_pred HCC-CCc--HHHHHHHHHHHHHHH
Q 003743 707 MTE-GFS--GADLQALLSDAQLSA 727 (799)
Q Consensus 707 ~~~-g~s--g~di~~~~~~a~~~a 727 (799)
... +|. -+++.+++..|+..|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 332 244 488888898888876
No 434
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.38 E-value=1.8e-05 Score=87.84 Aligned_cols=214 Identities=15% Similarity=0.163 Sum_probs=117.3
Q ss_pred EEeeecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 203 YTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
..-.+.|.....+++.++|.--..-+++|.+|++.+.... .++ ..+-+||+||+||||||.++.|+++++
T Consensus 66 ~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~-------~~l-~~~iLLltGPsGcGKSTtvkvLskelg-- 135 (634)
T KOG1970|consen 66 EDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFT-------PKL-GSRILLLTGPSGCGKSTTVKVLSKELG-- 135 (634)
T ss_pred ccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc-------cCC-CceEEEEeCCCCCCchhHHHHHHHhhC--
Confidence 3445667777788888888877777888888887332110 112 245689999999999999999999999
Q ss_pred CceeeEEEEEe-------cccccccch------hhHHHHHHHHHHHHH------------hcCCcEEEEccccccccCCC
Q 003743 283 KDLVAHIVFVC-------CSRLSLEKG------PIIRQALSNFISEAL------------DHAPSIVIFDNLDSIISSSS 337 (799)
Q Consensus 283 ~~~~~~~~~v~-------~s~l~~~~~------~~~~~~l~~~~~~a~------------~~~p~IL~IDEiD~l~~~~~ 337 (799)
+.+.+-. ...+..... ...-..+......+. ...+.+||+||+=..+..
T Consensus 136 ----~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~-- 209 (634)
T KOG1970|consen 136 ----YQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR-- 209 (634)
T ss_pred ----ceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--
Confidence 3333221 111111111 111111111111111 123558999999655421
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEe-cCCCCccchhhh------ccCceeEEEeccCCCHHH
Q 003743 338 DPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS-AQSLEKIPQSLT------SSGRFDFHVQLPAPAASE 410 (799)
Q Consensus 338 ~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~t-tn~~~~ld~aL~------r~gRf~~~i~~~~p~~~e 410 (799)
. .. ..+. +.+..+..... .+++++.| ++..+..++..+ -..|+. +|.|.+-...-
T Consensus 210 -------d-~~-~~f~---evL~~y~s~g~-----~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~ 271 (634)
T KOG1970|consen 210 -------D-DS-ETFR---EVLRLYVSIGR-----CPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTI 271 (634)
T ss_pred -------h-hH-HHHH---HHHHHHHhcCC-----CcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHH
Confidence 0 11 2222 22223332211 13333333 222333322222 223666 78999999998
Q ss_pred HHHHHHHHhhhcccCCC------HHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 411 RKAILEHEIQRRSLECS------DEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 411 r~~Il~~~l~~~~~~~~------~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
.+..+..++.......+ ...++.++..+.| ||+..+....
T Consensus 272 MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~G----DIRsAInsLQ 317 (634)
T KOG1970|consen 272 MKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGG----DIRSAINSLQ 317 (634)
T ss_pred HHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCc----cHHHHHhHhh
Confidence 99999888876665554 3335556555444 7777665443
No 435
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=1e-06 Score=82.61 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=48.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCC--CeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
+-++|+||.|||||++++.+++.+. .+++.++..+.........+ +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998876 77888888775432111111 333333332235679999999987
No 436
>PRK06526 transposase; Provisional
Probab=98.37 E-value=3.8e-07 Score=95.60 Aligned_cols=71 Identities=25% Similarity=0.396 Sum_probs=48.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcc-cHHHHHHHHHHhHhcCCeEEEEccccccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIA 615 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~ILfiDEid~l~ 615 (799)
..+++|+||||||||++|.+++..+ |..+..+++.+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 3589999999999999999998764 6777777777766543211 111222333332 346799999999874
No 437
>PRK06526 transposase; Provisional
Probab=98.37 E-value=5.8e-07 Score=94.23 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=45.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhh-HHHHHHHHHHHHHhcCCcEEEEcccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~-~~~~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
.+.+++|+||||||||+++.+++..+.... ..+.++.+.++....... ....+...+... ..+.+|+|||++.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 456799999999999999999998875332 233444444332211100 001112222222 45679999999877
Q ss_pred c
Q 003743 333 I 333 (799)
Q Consensus 333 ~ 333 (799)
.
T Consensus 172 ~ 172 (254)
T PRK06526 172 P 172 (254)
T ss_pred C
Confidence 4
No 438
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.36 E-value=1.1e-06 Score=99.98 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=80.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc---c---c------------chhhHHH-HH----
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---L---E------------KGPIIRQ-AL---- 309 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~---~---~------------~~~~~~~-~l---- 309 (799)
..+.+++|+||||||||++++.++..+...... ..+.+..+. + . .-..+.. .+
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~----e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~ 283 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE----EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGA 283 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCc----EEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCc
Confidence 456789999999999999999999877522110 001111100 0 0 0000000 00
Q ss_pred ---HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecC
Q 003743 310 ---SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQ 382 (799)
Q Consensus 310 ---~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn 382 (799)
...+. ....++|||||++.+.. .+...|.+.|+.-. ..........++.+|+|+|
T Consensus 284 ~~~pG~l~---~A~gGvLfLDEi~e~~~---------------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~N 345 (506)
T PRK09862 284 IPGPGEIS---LAHNGVLFLDELPEFER---------------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMN 345 (506)
T ss_pred eehhhHhh---hccCCEEecCCchhCCH---------------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeec
Confidence 01122 23457999999988742 56677777775432 1111122234689999999
Q ss_pred CCC---------------------ccchhhhccCceeEEEeccCCCHH
Q 003743 383 SLE---------------------KIPQSLTSSGRFDFHVQLPAPAAS 409 (799)
Q Consensus 383 ~~~---------------------~ld~aL~r~gRf~~~i~~~~p~~~ 409 (799)
+.. .++.++++ ||+.++.++.++.+
T Consensus 346 P~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 346 PSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 842 46778888 99999999999876
No 439
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.36 E-value=4.9e-07 Score=89.76 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=43.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH-HHHHHHHHHHHHhcCCcEEEEccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDS 331 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~-~~~l~~~~~~a~~~~p~IL~IDEiD~ 331 (799)
.+.+++|+||||||||+||.++++++-... ..+.+++..++........ .......+... ....+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 457899999999999999999998876433 4566666655432111000 01122233333 3557999999944
No 440
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.35 E-value=3.7e-05 Score=89.50 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh------hc----------------------cc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY------IG----------------------AS 587 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~------~g----------------------~s 587 (799)
|++....++++|+||+|||+++..++... +.+++.++..+-...+ .| ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 45666678999999999999998877543 5666666543211100 00 00
Q ss_pred HHHHHHHHHHhHhcCCeEEEEcccccccC
Q 003743 588 EQAVRDIFSKATAAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 588 e~~i~~~f~~a~~~~p~ILfiDEid~l~~ 616 (799)
+..+..+........|.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12233344444556788999999988753
No 441
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.35 E-value=9.9e-07 Score=92.57 Aligned_cols=67 Identities=28% Similarity=0.465 Sum_probs=49.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhc-----ccHHHHHHHHHHhHhcCCeEEEEcccccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIG-----ASEQAVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g-----~se~~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
+.+++|+||||||||+||.|+|+++ |..++.++.++++...-. ..+..+.. .. ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~---~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR---EL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH---Hh--hcCCEEEEecccCc
Confidence 4589999999999999999999876 789999999998765332 22222222 12 23359999999875
No 442
>PRK06921 hypothetical protein; Provisional
Probab=98.34 E-value=1.5e-06 Score=91.88 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=45.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccC-CceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS 331 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~-~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~ 331 (799)
..+++|+||||+|||+|+.++|+.+... . ..++++...++........ ......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g---~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKG---VPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcC---ceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 5679999999999999999999988643 2 4455666544322211111 1112222222 4567999999954
No 443
>PRK09183 transposase/IS protein; Provisional
Probab=98.34 E-value=1.1e-06 Score=92.76 Aligned_cols=72 Identities=26% Similarity=0.444 Sum_probs=50.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHh---CCCeEEEEeccchhhhhhcc-cHHHHHHHHHHhHhcCCeEEEEccccccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIA 615 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~---~~~~~i~i~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~ILfiDEid~l~ 615 (799)
..+++|+||||||||+++.+++.. .|..+..+++.++...+... ....+..++... ...+.+|+|||++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 457999999999999999999765 37788888888776543221 112244555543 3456799999998753
No 444
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.33 E-value=5.5e-07 Score=85.62 Aligned_cols=88 Identities=20% Similarity=0.313 Sum_probs=56.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCC---CeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 620 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~---~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~ 620 (799)
..|||+|+|||||+++|+++....+ .+|+.+++..+- .++++.+. ...|||+|+|.|.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a~---~gtL~l~~i~~L~----- 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQAK---GGTLYLKNIDRLS----- 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHCT---TSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHcC---CCEEEECChHHCC-----
Confidence 4799999999999999999998775 356666665532 44666663 3499999999993
Q ss_pred CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCC
Q 003743 621 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 656 (799)
Q Consensus 621 ~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~ 656 (799)
...+..|+..++.....+..+|..++..+.
T Consensus 83 ------~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~ 112 (138)
T PF14532_consen 83 ------PEAQRRLLDLLKRQERSNVRLIASSSQDLE 112 (138)
T ss_dssp ------HHHHHHHHHHHHHCTTTTSEEEEEECC-CC
T ss_pred ------HHHHHHHHHHHHhcCCCCeEEEEEeCCCHH
Confidence 456666666665433233333333333333
No 445
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.33 E-value=6.2e-06 Score=86.80 Aligned_cols=206 Identities=17% Similarity=0.232 Sum_probs=124.1
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|+.+++....++.++.+.+.+-- + ..++|+.|.+||||-.+|++.......+ ..+|+.+||
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~Am---------l----DAPLLI~GeTGTGKdLlAkaCH~~S~R~---~~pFlalNC 263 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKLAM---------L----DAPLLITGETGTGKDLLAKACHLASPRH---SKPFLALNC 263 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHhhc---------c----CCCeEEecCCCchHHHHHHHHhhcCccc---CCCeeEeec
Confidence 45678888888888888776644332 1 1239999999999999999987665432 268999999
Q ss_pred ccccccchhh-H------HHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH--hccc
Q 003743 295 SRLSLEKGPI-I------RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE--YGEK 365 (799)
Q Consensus 295 s~l~~~~~~~-~------~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~--~~~~ 365 (799)
+.+....... . .+--..+|+.+ ..+-+|+|||-.+.+ .+...|+.++.. +...
T Consensus 264 A~lPe~~aEsElFG~apg~~gk~GffE~A---ngGTVlLDeIgEmSp---------------~lQaKLLRFL~DGtFRRV 325 (511)
T COG3283 264 ASLPEDAAESELFGHAPGDEGKKGFFEQA---NGGTVLLDEIGEMSP---------------RLQAKLLRFLNDGTFRRV 325 (511)
T ss_pred CCCchhHhHHHHhcCCCCCCCccchhhhc---cCCeEEeehhhhcCH---------------HHHHHHHHHhcCCceeec
Confidence 8876433210 0 01112344444 455799999977753 444455554432 1111
Q ss_pred cCCccCCCCEEEEEecCCCC-------ccchhhhccCceeEEEeccCCCHHHH----HHHHH----HHhhhccc---CCC
Q 003743 366 RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASER----KAILE----HEIQRRSL---ECS 427 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~~-------~ld~aL~r~gRf~~~i~~~~p~~~er----~~Il~----~~l~~~~~---~~~ 427 (799)
++.....-+|.||+||..+- .+-+.|-- |.. ++.+..|...|| .-+.+ +++.+.+. .++
T Consensus 326 Gee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~ 402 (511)
T COG3283 326 GEDHEVHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLA 402 (511)
T ss_pred CCcceEEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccC
Confidence 12222234689999997631 12233332 443 344444444333 22333 33333333 467
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 428 DEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 428 ~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
++.+.++.++...-+.+++.+.+-+|+...
T Consensus 403 ~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 403 ADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 888999988887778999999988887543
No 446
>PRK06921 hypothetical protein; Provisional
Probab=98.32 E-value=1.1e-06 Score=92.84 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=46.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEccccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS 613 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~ 613 (799)
..+++|+||||||||+|+.++|+++ +..++.++..+++...... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4589999999999999999999875 5778888877765533211 11122222322 3456999999954
No 447
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.32 E-value=2.9e-06 Score=89.08 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=48.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHH-HHHHHHhcCCcEEEEccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSN-FISEALDHAPSIVIFDNLDS 331 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~-~~~~a~~~~p~IL~IDEiD~ 331 (799)
.+.+++|+||||+|||+||.|+++++...+ ..+.++...++...-...... .... +.... ....+|+|||+-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g---~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAG---ISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccC
Confidence 567899999999999999999999987322 456666666654433222211 1111 11112 4567999999966
Q ss_pred cc
Q 003743 332 II 333 (799)
Q Consensus 332 l~ 333 (799)
..
T Consensus 179 ~~ 180 (254)
T COG1484 179 EP 180 (254)
T ss_pred cc
Confidence 53
No 448
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.31 E-value=5.4e-06 Score=106.21 Aligned_cols=329 Identities=16% Similarity=0.246 Sum_probs=166.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHh---c----CCcEEEEcc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD---H----APSIVIFDN 328 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~---~----~p~IL~IDE 328 (799)
+.++++||+|+|||.++........... ++.++.+..... ..+...+...+..-.. + ..-++|+||
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~-----~~~~~fs~~ts~--~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDRE-----VYLLNFSSVTSS--ELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDD 200 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccch-----heEEeeeeeccH--HHHHHHHHHHHHHhcccCCCCCCCceeEEEEec
Confidence 6699999999999999988776654221 111222222111 1111112211111110 1 123899999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC----ccchhhhccCceeEEEecc
Q 003743 329 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLP 404 (799)
Q Consensus 329 iD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~----~ld~aL~r~gRf~~~i~~~ 404 (799)
++... .+..|.+... .+..++.+...-+......+....++.+++++|++. .+++.+.| .|. .+.+.
T Consensus 201 inmp~---~~~yg~q~~~---~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~ 271 (1395)
T KOG3595|consen 201 INMPA---LDKYGDQPPI---ELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLN 271 (1395)
T ss_pred cCCch---hhhcCCccHH---HHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeC
Confidence 98776 3444444322 344444443333333334566677899999999743 46677777 666 78999
Q ss_pred CCCHHHHHHHHHHHhhhcccCCCHHH---HHHHHhhc-------------------CCCChhhHHHHH------------
Q 003743 405 APAASERKAILEHEIQRRSLECSDEI---LLDVASKC-------------------DGYDAYDLEILV------------ 450 (799)
Q Consensus 405 ~p~~~er~~Il~~~l~~~~~~~~~~~---l~~la~~~-------------------~g~s~~dl~~lv------------ 450 (799)
.|+.+...+|+..++....- ..+.. ...+...+ .-|+.+|+..++
T Consensus 272 ~~~~~sl~~if~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~ 350 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGHLR-FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALL 350 (1395)
T ss_pred CCChhhHHHHHHHHHhcccC-ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhc
Confidence 99999999999988876533 22221 11111111 113445543332
Q ss_pred ------HHHHHHHhcccccCCCcccccccccceecccchhccc-------ccccccccccccccCCCCCCCCCCCChHHH
Q 003743 451 ------DRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE-------FLPVAMRDITKTSAEGGRSGWDDVGGLTDI 517 (799)
Q Consensus 451 ------~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~-------~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~ 517 (799)
+-+.+.+.+-+. +. .-.........+.+...+.. ..|.....+..... ..|..+...+.+
T Consensus 351 ~~~~l~~~~~~e~~rv~~-dr--lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~~~~~~~l 423 (1395)
T KOG3595|consen 351 TLEDLIRLWVHEAIRVFA-DR--LVDDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESH----KIYEEVLSVELL 423 (1395)
T ss_pred cHHHHHHHHHHHHHHhhh-hh--cccHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccc----cccCchHhHHHH
Confidence 222222221110 00 00000001111111111110 01111111111110 335555555655
Q ss_pred HHHHHHHhhccC----------------CChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 518 QNAIKEMIELPS----------------KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 518 ~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
...+........ .|-....+.-.+++++.++.|..|+||+++.+..+...+..++.+.....++
T Consensus 424 ~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~ 503 (1395)
T KOG3595|consen 424 RGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYN 503 (1395)
T ss_pred HHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCc
Confidence 555544333211 0111112222357889999999999999999999999999998887765432
Q ss_pred hhhcccHHHHHHHHHHhHhcCC-eEEEEcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAP-CLLFFDE 610 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p-~ILfiDE 610 (799)
...-...++.+...+..... .++.++|
T Consensus 504 --~~~~~~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 504 --IEDFREDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred --HHHHHHHHHHHHHHhccCCCceEEeech
Confidence 12234456666666544333 3344455
No 449
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.30 E-value=1.2e-06 Score=94.31 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=50.4
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhccc-HHHHHHHHHHhHhcCCeEEEEcccccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~s-e~~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
..+++|+||+|||||+|+.|+|+++ |.++..+..++++....... ...+.+.++... ...+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 4689999999999999999999987 78888888888765432211 112334444433 3459999999764
No 450
>PRK15115 response regulator GlrR; Provisional
Probab=98.30 E-value=8.6e-06 Score=93.24 Aligned_cols=123 Identities=27% Similarity=0.391 Sum_probs=73.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhh-----cccH-------HHHHHHHHHhHhcCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASE-------QAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~-----g~se-------~~i~~~f~~a~~~~p~ILfi 608 (799)
..++++|++|||||++|+++.... +.+|+.++|..+..... |... .....+|+.+. ...|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE---GGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECC---CCEEEE
Confidence 369999999999999999998875 47999999987632211 1000 00011222232 248999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCccc---------cCcEEEEEecCCCCccChhhcCCCCcce-------ee
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATSRPDLLDAALLRPGRLDR-------LL 672 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~---------~~~vlvi~ttn~~~~ld~al~r~gRf~~-------~i 672 (799)
||||.|. ...+..|+..++.-.. ...+-+|+||+.. ++..+.+ |+|.. .+
T Consensus 235 ~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~~~ 300 (444)
T PRK15115 235 DEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRLNVV 300 (444)
T ss_pred EccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhhcee
Confidence 9999984 4456667766643210 1146778888753 3333333 44421 23
Q ss_pred ecCCCCHHHHH
Q 003743 673 FCDFPSPRERL 683 (799)
Q Consensus 673 ~~~~p~~~~r~ 683 (799)
.+..|...+|.
T Consensus 301 ~i~lPpLr~R~ 311 (444)
T PRK15115 301 SLKIPALAERT 311 (444)
T ss_pred eecCCChHhcc
Confidence 44555555553
No 451
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.30 E-value=5.5e-07 Score=89.36 Aligned_cols=70 Identities=27% Similarity=0.523 Sum_probs=47.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcc-cHHHHHHHHHHhHhcCCeEEEEcccccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
..+++|+||||||||++|.+++.++ +.++..++.++++...-.. ........++... .+.+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 4589999999999999999999765 8889999999987654321 1112233444433 3459999999653
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=3.9e-06 Score=78.62 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=45.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCc--eeeEEEEEeccccccc----------------chhhHHHHHHHHHHHH
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCCSRLSLE----------------KGPIIRQALSNFISEA 316 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~--~~~~~~~v~~s~l~~~----------------~~~~~~~~l~~~~~~a 316 (799)
.+.++++||||+|||++++.+++.+..... ....++.+++...... ...........+...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 567999999999999999999998842100 0256677776443310 0011122222333333
Q ss_pred HhcCCcEEEEccccccc
Q 003743 317 LDHAPSIVIFDNLDSII 333 (799)
Q Consensus 317 ~~~~p~IL~IDEiD~l~ 333 (799)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 33334599999999974
No 453
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.29 E-value=3.8e-06 Score=90.50 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=47.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHH-HHHHHHHHHHHhcCCcEEEEcccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR-QALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~-~~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
.+.+++|+||||||||+|+.++|+++.... ..+.++....+......... ..+...+... ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 457899999999999999999999986433 33455555443322111111 1122333333 45679999999654
No 454
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.27 E-value=9.6e-06 Score=94.44 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=106.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHH---H--HHHHhcCCcEEEEcccc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNF---I--SEALDHAPSIVIFDNLD 330 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~---~--~~a~~~~p~IL~IDEiD 330 (799)
++|||-|++|||||+++++++..+............+....+.+. +.+...+..- + ..+.....+||||||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg--~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGG--LDLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCC--chHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 689999999999999999999998642111111111222333332 2222222110 0 00011234699999998
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCCccCCCCEEEEEecCCC---CccchhhhccCceeEEEec
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQL 403 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~----~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf~~~i~~ 403 (799)
.+.+ .+.+.|++.|+.-.- .........++++|+|.|.. +.++++++. ||+.+|.+
T Consensus 104 ~~~~---------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 104 RLEP---------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCCH---------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 8752 678888888875321 11122233468888885543 458899999 99999999
Q ss_pred cCCCHHHHH-------HHHHHHhhhcccCCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHH
Q 003743 404 PAPAASERK-------AILEHEIQRRSLECSDEILLDVASKCD--GY-DAYDLEILVDRTV 454 (799)
Q Consensus 404 ~~p~~~er~-------~Il~~~l~~~~~~~~~~~l~~la~~~~--g~-s~~dl~~lv~~A~ 454 (799)
+.++..+.. .|....-.-....+++..+++++..+. |. +.+....+++-|.
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraAR 227 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAAR 227 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 998865432 233222122357788888888776553 33 4454444554444
No 455
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.1e-05 Score=85.38 Aligned_cols=122 Identities=12% Similarity=0.176 Sum_probs=79.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCC----------ceeeEEEEEecccccccchhhHHHHHHHHHHHHH----hcC
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHK----------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHA 320 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~----------~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~ 320 (799)
+..+||+||+|+||+.+|.++|+.+-... .....+..+....-. . ...-+.++++...+. ...
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~--~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-R--LHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-C--cCcHHHHHHHHHHHhhCccCCC
Confidence 45699999999999999999999986321 001112222211100 0 011223444444432 233
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEE
Q 003743 321 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFH 400 (799)
Q Consensus 321 p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~ 400 (799)
.-|++||++|.+.. ...+.|+..+++... .+++|..|+.++.+.|.+++ |+. .
T Consensus 96 ~kv~ii~~ad~mt~---------------~AaNaLLK~LEEPp~---------~~~fiL~~~~~~~ll~TI~S--Rcq-~ 148 (290)
T PRK05917 96 YKIYIIHEADRMTL---------------DAISAFLKVLEDPPQ---------HGVIILTSAKPQRLPPTIRS--RSL-S 148 (290)
T ss_pred ceEEEEechhhcCH---------------HHHHHHHHHhhcCCC---------CeEEEEEeCChhhCcHHHHh--cce-E
Confidence 45999999999962 456677777777443 48888888899999999999 775 6
Q ss_pred EeccCC
Q 003743 401 VQLPAP 406 (799)
Q Consensus 401 i~~~~p 406 (799)
+.|+++
T Consensus 149 ~~~~~~ 154 (290)
T PRK05917 149 IHIPME 154 (290)
T ss_pred EEccch
Confidence 777765
No 456
>PRK09183 transposase/IS protein; Provisional
Probab=98.27 E-value=2.5e-06 Score=89.99 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=48.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhh-HHHHHHHHHHHHHhcCCcEEEEccccc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDS 331 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~-~~~~l~~~~~~a~~~~p~IL~IDEiD~ 331 (799)
..+.+++|+||||||||+|+.+++..+.... ..+.++++.++....... ....+...+... ...+.+++|||++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~ 175 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGY 175 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEccccc
Confidence 4467899999999999999999988764322 345566655543221111 111123334332 24677999999976
Q ss_pred cc
Q 003743 332 II 333 (799)
Q Consensus 332 l~ 333 (799)
..
T Consensus 176 ~~ 177 (259)
T PRK09183 176 LP 177 (259)
T ss_pred CC
Confidence 53
No 457
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.26 E-value=1.8e-05 Score=81.93 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=111.4
Q ss_pred ccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEE-EEecccccc
Q 003743 221 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV-FVCCSRLSL 299 (799)
Q Consensus 221 l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~-~v~~s~l~~ 299 (799)
+.|..-+++.|+..++..+.... -..|--+=|+|+|||||.++++.||+.+...+.....+. ++....+..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 34555566677777777665431 112334667999999999999999999875433211111 111111111
Q ss_pred -cchhhHHHH-HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEE
Q 003743 300 -EKGPIIRQA-LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 377 (799)
Q Consensus 300 -~~~~~~~~~-l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~v 377 (799)
+........ ...+...+.....+++++||+|.+.+ .+++.|...+|.+....+ . .....++
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~---------------gLld~lkpfLdyyp~v~g-v-~frkaIF 218 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP---------------GLLDVLKPFLDYYPQVSG-V-DFRKAIF 218 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH---------------hHHHHHhhhhcccccccc-c-cccceEE
Confidence 111112222 22333444556778999999999963 577777777775443221 1 1123555
Q ss_pred EEecCCCC-----------------------ccchhhh-----------------ccCceeEEEeccCCCHHHHHHHHHH
Q 003743 378 VASAQSLE-----------------------KIPQSLT-----------------SSGRFDFHVQLPAPAASERKAILEH 417 (799)
Q Consensus 378 I~ttn~~~-----------------------~ld~aL~-----------------r~gRf~~~i~~~~p~~~er~~Il~~ 417 (799)
|.-+|.-. .+.++|. ...++++.|.|.+.+......-++.
T Consensus 219 IfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 219 IFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred EEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHH
Confidence 65555311 1112221 1124555667777777777777777
Q ss_pred HhhhcccCCCHHHHHHHHhhcCCC
Q 003743 418 EIQRRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 418 ~l~~~~~~~~~~~l~~la~~~~g~ 441 (799)
.+.++++..+.+.++.+++...-|
T Consensus 299 el~~rg~~~d~~~~erva~~l~ff 322 (344)
T KOG2170|consen 299 ELRKRGLAPDQDFVERVANSLSFF 322 (344)
T ss_pred HHHhcccccchHHHHHHHHhhccc
Confidence 777777777777777777665443
No 458
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.25 E-value=2.8e-06 Score=101.84 Aligned_cols=209 Identities=14% Similarity=0.178 Sum_probs=134.7
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCc--eEEEECCCCCcHHHHHHHHHHHhccCCce
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPG--HILIHGPPGSGKTSLAKAVAKSLEHHKDL 285 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~--~vLL~GppGtGKT~la~alA~~l~~~~~~ 285 (799)
.|.....+.....+.|..+....+.+++..+-.. ...-|...+..... .+|++||||+|||+.+.++|+.++
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~-~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g----- 382 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDK-EKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG----- 382 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhcc-ccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-----
Confidence 4444445555677788887777888888666333 33334443333333 369999999999999999999999
Q ss_pred eeEEEEEecccccccchhhH-------HHHHHHHH---HHH--HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 003743 286 VAHIVFVCCSRLSLEKGPII-------RQALSNFI---SEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 353 (799)
Q Consensus 286 ~~~~~~v~~s~l~~~~~~~~-------~~~l~~~~---~~a--~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~ 353 (799)
..++..|.++......... ...+...+ ... ....-.||++||+|.++. .++ ..+.
T Consensus 383 -~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--~dR----------g~v~ 449 (871)
T KOG1968|consen 383 -FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--EDR----------GGVS 449 (871)
T ss_pred -cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--hhh----------hhHH
Confidence 7888899887663332100 00111111 000 001122899999999973 121 2233
Q ss_pred HHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHH
Q 003743 354 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 433 (799)
Q Consensus 354 ~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~ 433 (799)
.+..+.... .+-+|++||..+........ |.+.-++|+.|+..++..-+..++....+.+++..++.
T Consensus 450 ~l~~l~~ks-----------~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~ 516 (871)
T KOG1968|consen 450 KLSSLCKKS-----------SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEE 516 (871)
T ss_pred HHHHHHHhc-----------cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHH
Confidence 333333211 25688888886665443333 54467999999999999999999999999999999999
Q ss_pred HHhhcCCCChhhHHHHHHH
Q 003743 434 VASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 434 la~~~~g~s~~dl~~lv~~ 452 (799)
+.+.+ ++||++.+..
T Consensus 517 ~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 517 ISKLS----GGDIRQIIMQ 531 (871)
T ss_pred HHHhc----ccCHHHHHHH
Confidence 99887 4466665443
No 459
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=4e-06 Score=78.57 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=59.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC--------CCeEEEEeccchhh--hh------------hc-ccHHH-HHHHHHHh
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC--------SLRFISVKGPELLN--KY------------IG-ASEQA-VRDIFSKA 598 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~--------~~~~i~i~~~~l~~--~~------------~g-~se~~-i~~~f~~a 598 (799)
.+.++++||||+|||++++.++..+ ..+++.++++...+ .+ .+ .+... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 67888888765431 00 01 12233 33333333
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEec
Q 003743 599 TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 652 (799)
Q Consensus 599 ~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~tt 652 (799)
......+|+|||+|.+. ....++.+...++ ...-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44444599999999984 1456666655555 223345555544
No 460
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.24 E-value=3.7e-05 Score=79.41 Aligned_cols=134 Identities=22% Similarity=0.289 Sum_probs=77.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
..+-.++||+|||||..++.+|+.++ .+++.++|++-... ..+..++..+.. ..+.+.+||++++..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG------~~~~vfnc~~~~~~------~~l~ril~G~~~-~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALG------RFVVVFNCSEQMDY------QSLSRILKGLAQ-SGAWLCFDEFNRLSE 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS-H------HHHHHHHHHHHH-HT-EEEEETCCCSSH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhC------CeEEEecccccccH------HHHHHHHHHHhh-cCchhhhhhhhhhhH
Confidence 45567899999999999999999999 88999999984332 234455544433 457999999999851
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCC-------ccCCCCEEEEEecCC----CCccchhhhccCceeEEEec
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS-------SCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQL 403 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~-------~~~~~~v~vI~ttn~----~~~ld~aL~r~gRf~~~i~~ 403 (799)
.....+...+..+.+........ ..-....-++.|.|+ ...+|+.|+. -| +.|.+
T Consensus 99 -----------~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam 164 (231)
T PF12774_consen 99 -----------EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAM 164 (231)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE-
T ss_pred -----------HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEE
Confidence 22223444444444444332211 111123556677774 3468888876 44 47888
Q ss_pred cCCCHHHHHHHH
Q 003743 404 PAPAASERKAIL 415 (799)
Q Consensus 404 ~~p~~~er~~Il 415 (799)
..||.....+++
T Consensus 165 ~~PD~~~I~ei~ 176 (231)
T PF12774_consen 165 MVPDLSLIAEIL 176 (231)
T ss_dssp -S--HHHHHHHH
T ss_pred eCCCHHHHHHHH
Confidence 888877666555
No 461
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=1.1e-05 Score=85.27 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCe----------------EEEEeccchhhhhhcccHHHHHHHHHHhH----hcC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLR----------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAA 602 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~----------------~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~ 602 (799)
+..+||+||+|+||+.+|.++|..+-+. +..+.+.. .+.. -+-+.++++.+.+. .+.
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccCCC
Confidence 4478999999999999999999876321 22221110 0000 12345566555542 244
Q ss_pred CeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCC
Q 003743 603 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 677 (799)
Q Consensus 603 p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p 677 (799)
..|++||++|.+ ...+.|.||+.|+ ++..++++|..|+.++.+-|.+++ |. ..+.|+++
T Consensus 96 ~kv~ii~~ad~m-----------t~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM-----------TLDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhc-----------CHHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 469999999998 4568899999998 677778888899999999999998 55 45566654
No 462
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.8e-06 Score=94.95 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=37.9
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
...|.+|.|.+..+..+.-. ..-+.++||+||||||||++|+.+...|-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA-----------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA-----------------AAGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH-----------------HhcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 56789999998777654321 12355799999999999999999988765
No 463
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.16 E-value=3.3e-06 Score=89.60 Aligned_cols=138 Identities=20% Similarity=0.333 Sum_probs=76.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC-e--EEEEeccchhhhhhcccHHHHHHHHHHh-----------HhcCCeEEEE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL-R--FISVKGPELLNKYIGASEQAVRDIFSKA-----------TAAAPCLLFF 608 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~-~--~i~i~~~~l~~~~~g~se~~i~~~f~~a-----------~~~~p~ILfi 608 (799)
..++||+||+|||||++++..-..+.- . ...++++.. .+...+..+++.. ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 357999999999999999887766532 2 334444331 1122333333221 1233479999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCcc--------ccCcEEEEEecCCCC---ccChhhcCCCCcceeeecCCC
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------VLTGVFVFAATSRPD---LLDAALLRPGRLDRLLFCDFP 677 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--------~~~~vlvi~ttn~~~---~ld~al~r~gRf~~~i~~~~p 677 (799)
||+..-.+.. ......-+++.+++.. .|.. .-..+.++|+++.+. .+++.++| .| .++.++.|
T Consensus 107 DDlN~p~~d~--ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p 180 (272)
T PF12775_consen 107 DDLNMPQPDK--YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYP 180 (272)
T ss_dssp ETTT-S---T--TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----
T ss_pred cccCCCCCCC--CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCC
Confidence 9998765432 1111122344444322 1111 123577888887543 27888887 66 47899999
Q ss_pred CHHHHHHHHHHHHcc
Q 003743 678 SPRERLDILKVISRK 692 (799)
Q Consensus 678 ~~~~r~~Il~~~~~~ 692 (799)
+.++...|+..++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999998777653
No 464
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.16 E-value=2.1e-05 Score=81.20 Aligned_cols=125 Identities=22% Similarity=0.285 Sum_probs=71.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 623 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~ 623 (799)
.+..++||+|||||++++.+|..+|..++.++|++.. ....+.++|.-+...+ +.+.|||+++|...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~G-aW~cfdefnrl~~~------ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQSG-AWLCFDEFNRLSEE------ 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHH------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhcC-chhhhhhhhhhhHH------
Confidence 3677899999999999999999999999999998853 3466778887665542 69999999998422
Q ss_pred chhhHHHHHHHhhc-cCccc--------------cCcEEEEEecCCC----CccChhhcCCCCcceeeecCCCCHHHHHH
Q 003743 624 GVTDRVVNQFLTEL-DGVEV--------------LTGVFVFAATSRP----DLLDAALLRPGRLDRLLFCDFPSPRERLD 684 (799)
Q Consensus 624 ~~~~r~~~~ll~~l-d~~~~--------------~~~vlvi~ttn~~----~~ld~al~r~gRf~~~i~~~~p~~~~r~~ 684 (799)
.. .++.+.+..+ +.+.. ....-++.|.|.. ..+++.++. -| +-+.+..||.....+
T Consensus 100 -vL-S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~e 174 (231)
T PF12774_consen 100 -VL-SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAE 174 (231)
T ss_dssp -HH-HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHH
T ss_pred -HH-HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHH
Confidence 11 1122222211 11110 1123344455532 347777775 33 677888888765554
Q ss_pred HH
Q 003743 685 IL 686 (799)
Q Consensus 685 Il 686 (799)
++
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 465
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.16 E-value=6.7e-06 Score=94.16 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=62.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhh-----cccH-------HHHHHHHHHhHhcCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASE-------QAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~-----g~se-------~~i~~~f~~a~~~~p~ILfi 608 (799)
.+++++|++||||+++|+++.... +.+|+.++|..+....+ |... ......|..|. ..+|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECC---CCEEEE
Confidence 479999999999999999998765 46899999987632211 1000 00111222332 349999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCCC
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRP 655 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~~ 655 (799)
|||+.|. ..++..|+..++.-. . ...+-+|+||+..
T Consensus 240 ~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 240 DEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred echhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 9999983 456667777664321 1 1146677777654
No 466
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.15 E-value=4.6e-05 Score=84.81 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=95.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEecc-------chhhhhhccc------HHHHHHHHHHh------------
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP-------ELLNKYIGAS------EQAVRDIFSKA------------ 598 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~-------~l~~~~~g~s------e~~i~~~f~~a------------ 598 (799)
+-+||+||+|||||++++.++.++|..+++-.-+ .+.+...+.. -..+......+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 3578899999999999999999999888775411 1111111111 11122233333
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCC------CCcceee
Q 003743 599 TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRP------GRLDRLL 672 (799)
Q Consensus 599 ~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~------gRf~~~i 672 (799)
....|.+|++||+=..+.. . ..+.+...|.++-......-|++|.-+..++..++..+.+ .|+. .|
T Consensus 191 ~~~~~~liLveDLPn~~~~------d-~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~I 262 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYR------D-DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NI 262 (634)
T ss_pred cccCceEEEeeccchhhhh------h-hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eE
Confidence 1244679999998766533 1 2233333444433222233344444444444433333221 2443 56
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCc----ccHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 003743 673 FCDFPSPRERLDILKVISRKLPLADD----VDLEAIAHMTEGFSGADLQALLSDAQLSAV 728 (799)
Q Consensus 673 ~~~~p~~~~r~~Il~~~~~~~~~~~~----~~~~~la~~~~g~sg~di~~~~~~a~~~a~ 728 (799)
.|.|-...-..+.|+.++........ -+...+..++. -+++||+.+++..++-+.
T Consensus 263 sFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~-~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 263 SFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQ-GSGGDIRSAINSLQLSSS 321 (634)
T ss_pred eecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHH-hcCccHHHHHhHhhhhcc
Confidence 77776776667777766654322211 12333444444 356899998887766654
No 467
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.15 E-value=2.4e-05 Score=83.93 Aligned_cols=161 Identities=19% Similarity=0.282 Sum_probs=85.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh--ccCCceeeEEEEEeccccccc-------------------chhhHHHHHHH
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSL--EHHKDLVAHIVFVCCSRLSLE-------------------KGPIIRQALSN 311 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l--~~~~~~~~~~~~v~~s~l~~~-------------------~~~~~~~~l~~ 311 (799)
+..+.+.|+|++|+|||+||+.+++.. .... ..+++++.+.-... ....... +..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f---~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~ 92 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF---DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQD 92 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC---TEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccc---cccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 456779999999999999999999873 3222 23344444321111 0111222 222
Q ss_pred HHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhh
Q 003743 312 FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 391 (799)
Q Consensus 312 ~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL 391 (799)
.+.......+++|+|||++... ....+...+-.... ...||.||.... +-..+
T Consensus 93 ~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~~---------~~kilvTTR~~~-v~~~~ 145 (287)
T PF00931_consen 93 QLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFSS---------GSKILVTTRDRS-VAGSL 145 (287)
T ss_dssp HHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHHS---------S-EEEEEESCGG-GGTTH
T ss_pred cchhhhccccceeeeeeecccc-----------------cccccccccccccc---------cccccccccccc-ccccc
Confidence 2333333558899999996652 11112221111110 134555665432 22222
Q ss_pred hccCceeEEEeccCCCHHHHHHHHHHHhhhcc---cCCCHHHHHHHHhhcCCCChhhHHH
Q 003743 392 TSSGRFDFHVQLPAPAASERKAILEHEIQRRS---LECSDEILLDVASKCDGYDAYDLEI 448 (799)
Q Consensus 392 ~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~---~~~~~~~l~~la~~~~g~s~~dl~~ 448 (799)
.. . ...+.++..+.++-.++|........ ....++....+++.|.|. |-.|..
T Consensus 146 ~~--~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 201 (287)
T PF00931_consen 146 GG--T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKL 201 (287)
T ss_dssp HS--C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHH
T ss_pred cc--c-ccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 21 1 45899999999999999998876544 122244578899998874 444433
No 468
>PF14516 AAA_35: AAA-like domain
Probab=98.15 E-value=0.00014 Score=79.80 Aligned_cols=179 Identities=17% Similarity=0.136 Sum_probs=104.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH--------------------------
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-------------------------- 307 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-------------------------- 307 (799)
++..+.+.||..+|||++...+.+.+.... ...+++++..+..........
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~ 106 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEE 106 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHh
Confidence 366799999999999999999998886543 566677776653321111110
Q ss_pred -----HHHHHHHHH---HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEE
Q 003743 308 -----ALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVA 379 (799)
Q Consensus 308 -----~l~~~~~~a---~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ 379 (799)
.....|... ....|-||+|||||.++.. ......++..|..+.+..... ..+. .-+++++
T Consensus 107 ~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~~~LR~~~~~~~~~-~~~~--~L~li~~ 174 (331)
T PF14516_consen 107 IGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFFGLLRSWYEQRKNN-PIWQ--KLRLILA 174 (331)
T ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHHHHHHHHHHhcccC-cccc--eEEEEEe
Confidence 011111111 1135679999999999831 111224555555554432211 1110 0123333
Q ss_pred ecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 380 SAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 380 ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.+.........-.+|..+...|.++..+.+|...+++.+ +...++..++.+...+.|. |.-++.+|..
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGh-P~Lv~~~~~~ 242 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGH-PYLVQKACYL 242 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 333222222223466677778999999999998887764 4556777799999999884 5544444443
No 469
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=5.4e-05 Score=80.45 Aligned_cols=148 Identities=12% Similarity=0.195 Sum_probs=94.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCC------------------------eEEEEeccchhhhhhcccHHHHHHHHHH
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFSK 597 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~------------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~ 597 (799)
.+..+||+|| +||+++|+.+|..+-. .++.+.+. +. .-.-+.++++.+.
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~---~~--~I~idqIR~l~~~ 95 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ---GQ--VIKTDTIRELVKN 95 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC---CC--cCCHHHHHHHHHH
Confidence 3457899996 6899999999986521 11222110 00 0123556666655
Q ss_pred hH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeee
Q 003743 598 AT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 673 (799)
Q Consensus 598 a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~ 673 (799)
+. .+...|++||++|.+ .....|.||+.|+ ++..++++|.+|+.++.+-|.+++ |. ..++
T Consensus 96 ~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~ 159 (290)
T PRK07276 96 FSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFH 159 (290)
T ss_pred HhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeee
Confidence 53 234479999999998 4568899999998 566778888889999999999999 55 5678
Q ss_pred cCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHH
Q 003743 674 CDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALL 720 (799)
Q Consensus 674 ~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~ 720 (799)
|++ +.++..+++. ..+++.+. ...++..+ | +.+....+.
T Consensus 160 f~~-~~~~~~~~L~----~~g~~~~~-a~~la~~~-~-s~~~A~~l~ 198 (290)
T PRK07276 160 FPK-NEAYLIQLLE----QKGLLKTQ-AELLAKLA-Q-STSEAEKLA 198 (290)
T ss_pred CCC-cHHHHHHHHH----HcCCChHH-HHHHHHHC-C-CHHHHHHHh
Confidence 866 5565555554 22333221 33344444 4 555555554
No 470
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.13 E-value=4.2e-05 Score=87.93 Aligned_cols=98 Identities=26% Similarity=0.333 Sum_probs=62.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh-----hcccHH-------HHHHHHHHhHhcCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~-----~g~se~-------~i~~~f~~a~~~~p~ILfi 608 (799)
..++++|++||||+++|+++.... +.+|+.++|..+.... +|.... .-...|..|. ..+|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEE
Confidence 479999999999999999998764 5799999998763221 111000 0011233332 249999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCCC
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRP 655 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~~ 655 (799)
||++.|. ..++..|+..++.-. . ..++-||+||+..
T Consensus 244 d~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 244 DEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred echhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 9999984 345667776664321 1 1236788888753
No 471
>PRK06851 hypothetical protein; Provisional
Probab=98.11 E-value=1.3e-05 Score=87.70 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=28.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEecc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 577 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~ 577 (799)
+-++|.|+||||||++++.++.++ |..+....|+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 369999999999999999999866 6777777765
No 472
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.09 E-value=1.8e-05 Score=92.26 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=85.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCC--CeEEEEeccchhhhhhccc--HHHH--------HHHHHHhHhcCCeEEEEccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGAS--EQAV--------RDIFSKATAAAPCLLFFDEF 611 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~~l~~~~~g~s--e~~i--------~~~f~~a~~~~p~ILfiDEi 611 (799)
+||++.|++||||++++++++..+. .+|+.+..+--....+|.. +..+ ..++..|-. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999885 4787766554444445432 1111 122222322 39999999
Q ss_pred ccccCCCCCCCCchhhHHHHHHHhhccCcc-----------ccCcEEEEEecCCC---CccChhhcCCCCcceeeecCCC
Q 003743 612 DSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRP---DLLDAALLRPGRLDRLLFCDFP 677 (799)
Q Consensus 612 d~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-----------~~~~vlvi~ttn~~---~~ld~al~r~gRf~~~i~~~~p 677 (799)
..+ .+.+++.|+..|+.-. ...++++|+|-|.. ..+.++++. ||+..+.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 887 5678899998886311 12357888874332 238899999 99999999988
Q ss_pred CHHH
Q 003743 678 SPRE 681 (799)
Q Consensus 678 ~~~~ 681 (799)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
No 473
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=2.5e-05 Score=80.92 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=81.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCC----------------------eEEEEeccchhhhhhcccHHHHHHHHHHhH
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSL----------------------RFISVKGPELLNKYIGASEQAVRDIFSKAT 599 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~----------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~ 599 (799)
++..+||+||+|+||..+|.++|..+-. .+..+.+.. . .-..+.++++.+...
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~---~--~I~id~ir~l~~~l~ 80 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK---N--PIKKEDALSIINKLN 80 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc---c--cCCHHHHHHHHHHHc
Confidence 4557999999999999999999986521 122211110 0 112344555544331
Q ss_pred -----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 600 -----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 600 -----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
.+...|++||++|++ ...+.|.||+.++ ++..++++|.+|+.++.+-|.+++ |. ..+.|
T Consensus 81 ~~s~e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~ 144 (261)
T PRK05818 81 RPSVESNGKKIYIIYGIEKL-----------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RC-VQYVV 144 (261)
T ss_pred cCchhcCCCEEEEeccHhhh-----------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--he-eeeec
Confidence 234579999999998 4568899999998 677788888899999999999999 65 34566
Q ss_pred CCC
Q 003743 675 DFP 677 (799)
Q Consensus 675 ~~p 677 (799)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 666
No 474
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.08 E-value=3.2e-05 Score=90.78 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=51.3
Q ss_pred CEEEEEecCCC--CccchhhhccCcee---EEEeccC---CCHHHHHHHHHHHhhh-----cccCCCHHHHHHHHhhcC-
Q 003743 374 PIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLPA---PAASERKAILEHEIQR-----RSLECSDEILLDVASKCD- 439 (799)
Q Consensus 374 ~v~vI~ttn~~--~~ld~aL~r~gRf~---~~i~~~~---p~~~er~~Il~~~l~~-----~~~~~~~~~l~~la~~~~- 439 (799)
++.+|+++|+. ..++|+|.. ||. ..+.|.. -+.+.+..+++.+.+. ....++.+.+..+.+...
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56788888873 567899998 775 5566653 2345555555543322 123577877776665431
Q ss_pred --C------CChhhHHHHHHHHHHHHh
Q 003743 440 --G------YDAYDLEILVDRTVHAAV 458 (799)
Q Consensus 440 --g------~s~~dl~~lv~~A~~~a~ 458 (799)
| ...++|..+++.|...|.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~ 381 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIAR 381 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHH
Confidence 1 235778888888775553
No 475
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.06 E-value=1.5e-05 Score=90.49 Aligned_cols=195 Identities=18% Similarity=0.282 Sum_probs=122.5
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc--
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-- 299 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~-- 299 (799)
++...+.+....++..+.. ..-++|+.|.|||||-.|++++.+... ...+++.+||.-+..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~-------------~~~pvll~GEtGtGKe~laraiH~~s~----~~gpfvAvNCaAip~~l 378 (606)
T COG3284 316 PLLDPSRATLLRKAERVAA-------------TDLPVLLQGETGTGKEVLARAIHQNSE----AAGPFVAVNCAAIPEAL 378 (606)
T ss_pred cccCHHHHHHHHHHHHHhh-------------cCCCeEecCCcchhHHHHHHHHHhccc----ccCCeEEEEeccchHHh
Confidence 4666777777776654433 223499999999999999999988765 237899999965543
Q ss_pred -------cchhhHHHH----HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 003743 300 -------EKGPIIRQA----LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 366 (799)
Q Consensus 300 -------~~~~~~~~~----l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~--~~~ 366 (799)
...|..... .+..+.. ...+.+|+|||..+. ..+...|+..+.+.. .-+
T Consensus 379 iesELFGy~~GafTga~~kG~~g~~~~---A~gGtlFldeIgd~p---------------~~~Qs~LLrVl~e~~v~p~g 440 (606)
T COG3284 379 IESELFGYVAGAFTGARRKGYKGKLEQ---ADGGTLFLDEIGDMP---------------LALQSRLLRVLQEGVVTPLG 440 (606)
T ss_pred hhHHHhccCccccccchhcccccccee---cCCCccHHHHhhhch---------------HHHHHHHHHHHhhCceeccC
Confidence 222222211 1111222 234589999997775 156677777766432 111
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCcee---------EEEeccCCCH-HHHHHHHHHHhhh---cccCCCHHHHHH
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD---------FHVQLPAPAA-SERKAILEHEIQR---RSLECSDEILLD 433 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~---------~~i~~~~p~~-~er~~Il~~~l~~---~~~~~~~~~l~~ 433 (799)
... ..-+|.||++|+..- ..|.+-|||. ..|.+|+.-+ .++...+.+++.+ ..+.++++++..
T Consensus 441 ~~~-~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~ 516 (606)
T COG3284 441 GTR-IKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALAR 516 (606)
T ss_pred Ccc-eeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHH
Confidence 111 223588999987632 2444555553 3455555543 3444555555543 457789999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHH
Q 003743 434 VASKCDGYDAYDLEILVDRTVH 455 (799)
Q Consensus 434 la~~~~g~s~~dl~~lv~~A~~ 455 (799)
+..+..--+.++|.+++..++.
T Consensus 517 l~~~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 517 LLAYRWPGNIRELDNVIERLAA 538 (606)
T ss_pred HHhCCCCCcHHHHHHHHHHHHH
Confidence 8888777789999999988774
No 476
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=8.6e-05 Score=79.60 Aligned_cols=124 Identities=12% Similarity=0.122 Sum_probs=88.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCC-------------eEEEEeccchhhhhhcccHHHHHHHHHHhH-----hcCCeE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSL-------------RFISVKGPELLNKYIGASEQAVRDIFSKAT-----AAAPCL 605 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~-------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~-----~~~p~I 605 (799)
..+||+|+.|.||+.+|+.++..+-+ .++.++.. +. .-+-..++++.+... .+...|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccCCceE
Confidence 36889999999999999999987611 22333210 00 012245666666552 135679
Q ss_pred EEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHH
Q 003743 606 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 685 (799)
Q Consensus 606 LfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~I 685 (799)
++||++|.+ .....+.|++.|+ ++...+++|.+|+.++.+-|.+++ |. ..+.|++|+.++..+.
T Consensus 94 vII~~~e~m-----------~~~a~NaLLK~LE--EPp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 94 LIIKNIEKT-----------SNSLLNALLKTIE--EPPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAK 157 (299)
T ss_pred EEEeccccc-----------CHHHHHHHHHHhh--CCCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHH
Confidence 999999887 4567889999998 455666666677788889999998 44 5789999999888777
Q ss_pred HHH
Q 003743 686 LKV 688 (799)
Q Consensus 686 l~~ 688 (799)
+..
T Consensus 158 l~~ 160 (299)
T PRK07132 158 LLS 160 (299)
T ss_pred HHH
Confidence 654
No 477
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00013 Score=78.28 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=93.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccC-------CceeeEEEEEecccccccchhhHHHHHHHHHHHHHh-----cCCc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHH-------KDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPS 322 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~-------~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~-----~~p~ 322 (799)
+..+||+|+.|.||+.+++.+++.+... ......+..++... .. ...+.++.+...+.. +..-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---Cc--CCHHHHHHHHHHhccCCcccCCce
Confidence 3458999999999999999999998321 11111233332111 11 111234444444321 2556
Q ss_pred EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEe
Q 003743 323 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQ 402 (799)
Q Consensus 323 IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~ 402 (799)
|++||++|.+.. ...+.|+..+++... .+++|.+|+.++.+-+.+++ |.. .++
T Consensus 93 vvII~~~e~m~~---------------~a~NaLLK~LEEPp~---------~t~~il~~~~~~kll~TI~S--Rc~-~~~ 145 (299)
T PRK07132 93 ILIIKNIEKTSN---------------SLLNALLKTIEEPPK---------DTYFLLTTKNINKVLPTIVS--RCQ-VFN 145 (299)
T ss_pred EEEEecccccCH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChHhChHHHHh--CeE-EEE
Confidence 999999988851 345567777776443 36777777778899999998 765 799
Q ss_pred ccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCC
Q 003743 403 LPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 440 (799)
Q Consensus 403 ~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g 440 (799)
|.+++.++..+.+... + ++++....++..+.+
T Consensus 146 f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 146 VKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred CCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcCC
Confidence 9999999988777642 2 455555555555443
No 478
>PHA02624 large T antigen; Provisional
Probab=98.04 E-value=1.1e-05 Score=91.90 Aligned_cols=129 Identities=22% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLD 330 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD 330 (799)
|+|..+.+|||||||||||+|+.+|++.++ ..++.+|+..-. ..-.+.-+ ...-+.+|||+-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~------G~vlsVNsPt~k----------s~FwL~pl--~D~~~~l~dD~t 488 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCG------GKSLNVNCPPDK----------LNFELGCA--IDQFMVVFEDVK 488 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcC------CeEEEeeCCcch----------hHHHhhhh--hhceEEEeeecc
Confidence 678888999999999999999999999996 344445533311 11111111 223489999996
Q ss_pred ccccCCCC-CCCCCCchhHHHHHHHHHHHHHHhc-----cccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEecc
Q 003743 331 SIISSSSD-PEGSQPSTSVIALTKFLVDIMDEYG-----EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 404 (799)
Q Consensus 331 ~l~~~~~~-~~~~~~~~~~~~l~~~Ll~~ld~~~-----~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~ 404 (799)
.-+-...+ +.|.+-. -...|.+.+||.. .+..+.....---.|.|||. ..||..+.- ||..++.|.
T Consensus 489 ~~~~~~~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 489 GQPADNKDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred ccccccccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 55421111 1111111 1356777788761 11111111111124567775 457777877 888888775
Q ss_pred C
Q 003743 405 A 405 (799)
Q Consensus 405 ~ 405 (799)
.
T Consensus 561 ~ 561 (647)
T PHA02624 561 P 561 (647)
T ss_pred c
Confidence 4
No 479
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.01 E-value=2.8e-05 Score=88.88 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=53.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhh-----cccHHH-------HHHHHHHhHhcCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASEQA-------VRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~-----g~se~~-------i~~~f~~a~~~~p~ILfi 608 (799)
..++++|.+||||+++|+++.... +.+|+.++|..+..... |..... ....|..| ...+|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeEC---CCCEEEE
Confidence 479999999999999999998655 47899999987532211 110000 00112222 2458999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhcc
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELD 638 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld 638 (799)
|||+.|. ...+..|+..++
T Consensus 240 dei~~l~-----------~~~q~~l~~~l~ 258 (441)
T PRK10365 240 DEIGDIS-----------PMMQVRLLRAIQ 258 (441)
T ss_pred eccccCC-----------HHHHHHHHHHHc
Confidence 9999994 345566666664
No 480
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.98 E-value=5.9e-05 Score=86.99 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=91.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh-----hcccHH-------HHHHHHHHhHhcCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~-----~g~se~-------~i~~~f~~a~~~~p~ILfi 608 (799)
..+++.|++|||||++|+++.... +.+|+.++|..+.... .|.... .....|+.+. ...|||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~l 238 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD---GGTLFL 238 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEEE
Confidence 469999999999999999999876 4799999998763211 111100 0011222332 248999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCCCC-------ccChhhcCCCCcc-ee
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPD-------LLDAALLRPGRLD-RL 671 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~~~-------~ld~al~r~gRf~-~~ 671 (799)
||++.|. ...+..|+..++.-. . ...+-||+||+..- .+.+.|.. ||. ..
T Consensus 239 ~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~ 305 (469)
T PRK10923 239 DEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIR 305 (469)
T ss_pred eccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhccee
Confidence 9999984 445667777665321 1 12356777776531 23444554 553 44
Q ss_pred eecCCCC--HHHHHHHHHHHHccC----CCC-Cccc---HHHHHHHCCCCcHHHHHHHHHHHHH
Q 003743 672 LFCDFPS--PRERLDILKVISRKL----PLA-DDVD---LEAIAHMTEGFSGADLQALLSDAQL 725 (799)
Q Consensus 672 i~~~~p~--~~~r~~Il~~~~~~~----~~~-~~~~---~~~la~~~~g~sg~di~~~~~~a~~ 725 (799)
|.+|+-. .+.+..+++.++... +.. ..++ +..|..+.---+-+++++++..+..
T Consensus 306 i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~ 369 (469)
T PRK10923 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTV 369 (469)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 4555432 233444555554322 211 1233 3444444322334677776665543
No 481
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.98 E-value=8.1e-05 Score=84.62 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=90.7
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcC-CCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYH-LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g-~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l 297 (799)
.+|.+++++|+.++=+| ++..... +...| ....-+|||+|.||||||-+.+.+++.+... ++.+...
T Consensus 429 PsIye~edvKkglLLqL---fGGt~k~-~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg-------~yTSGkG- 496 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQL---FGGTRKE-DEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG-------VYTSGKG- 496 (804)
T ss_pred hhhhcccchhhhHHHHH---hcCCccc-ccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc-------eeecCCc-
Confidence 45566677766654332 3322222 22222 3334579999999999999999999987632 1111100
Q ss_pred cccchhhHHH-----HHHHHHHH---HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---ccc
Q 003743 298 SLEKGPIIRQ-----ALSNFISE---ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EKR 366 (799)
Q Consensus 298 ~~~~~~~~~~-----~l~~~~~~---a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~---~~~ 366 (799)
....|.+.. .-+++.-+ +.....+|..|||+|.+.- ...+.|.+.|+.-. .+.
T Consensus 497 -sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d---------------StrSvLhEvMEQQTvSIAKA 560 (804)
T KOG0478|consen 497 -SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD---------------STRSVLHEVMEQQTLSIAKA 560 (804)
T ss_pred -cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH---------------HHHHHHHHHHHHhhhhHhhc
Confidence 000000000 00001000 0113567999999999941 33455556665311 111
Q ss_pred CCccC-CCCEEEEEecCCCC-------------ccchhhhccCceeEEE-eccCCCHHHHHHHHHHH
Q 003743 367 KSSCG-IGPIAFVASAQSLE-------------KIPQSLTSSGRFDFHV-QLPAPAASERKAILEHE 418 (799)
Q Consensus 367 ~~~~~-~~~v~vI~ttn~~~-------------~ld~aL~r~gRf~~~i-~~~~p~~~er~~Il~~~ 418 (799)
.-++. .-+.-|+|++|+.. .|+|.|++ ||+.++ -++.|++..=+.|..+.
T Consensus 561 GII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 561 GIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred ceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHH
Confidence 11111 12456888888632 36899999 999765 56777776334444433
No 482
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00034 Score=71.47 Aligned_cols=176 Identities=20% Similarity=0.323 Sum_probs=103.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc-------------ccccch----hhHHHHHHHHHHHHHh-
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-------------LSLEKG----PIIRQALSNFISEALD- 318 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~-------------l~~~~~----~~~~~~l~~~~~~a~~- 318 (799)
-+.++|+.|||||+++|++...+..+... .++++... +..... ....+.-+.+......
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~---~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVA---VVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceE---EEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 58889999999999999888777643322 23443222 111110 1112222222233333
Q ss_pred cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhcc----
Q 003743 319 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS---- 394 (799)
Q Consensus 319 ~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~---- 394 (799)
..|.++++||++.+..+ .-.....|.+.-++... .-.++.|+-. .|.+.++.+
T Consensus 130 ~r~v~l~vdEah~L~~~------------~le~Lrll~nl~~~~~~-------~l~ivL~Gqp----~L~~~lr~~~l~e 186 (269)
T COG3267 130 KRPVVLMVDEAHDLNDS------------ALEALRLLTNLEEDSSK-------LLSIVLIGQP----KLRPRLRLPVLRE 186 (269)
T ss_pred CCCeEEeehhHhhhChh------------HHHHHHHHHhhcccccC-------ceeeeecCCc----ccchhhchHHHHh
Confidence 34579999999998621 11222333332222211 1225555532 223322221
Q ss_pred --CceeEEEeccCCCHHHHHHHHHHHhhhccc---CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhc
Q 003743 395 --GRFDFHVQLPAPAASERKAILEHEIQRRSL---ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 459 (799)
Q Consensus 395 --gRf~~~i~~~~p~~~er~~Il~~~l~~~~~---~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~ 459 (799)
-|++..|.+++.+.++....++..++.-+. -++++.+..+.....| -|+-+.++|..|...|+.
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 288877999999999999999888876533 2567778888888888 477777777777766654
No 483
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.97 E-value=5e-05 Score=79.82 Aligned_cols=165 Identities=18% Similarity=0.267 Sum_probs=93.2
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
..+.|..+..+.+-+.++.-+- ......+++.||.|+|||+++......... .. -+++.+......
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~-----------~gEsnsviiigprgsgkT~li~~~Ls~~q~-~~--E~~l~v~Lng~~ 89 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL-----------HGESNSVIIIGPRGSGKTILIDTRLSDIQE-NG--ENFLLVRLNGEL 89 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH-----------hcCCCceEEEccCCCCceEeeHHHHhhHHh-cC--CeEEEEEECccc
Confidence 3455666666667776644332 124567999999999999997654433111 11 233333322211
Q ss_pred ccc---------------------hhhHHHHHHHHHHHHHh-----cCCcEEEEccccccccCCCCCCCCCCchhHHHHH
Q 003743 299 LEK---------------------GPIIRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 352 (799)
Q Consensus 299 ~~~---------------------~~~~~~~l~~~~~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~ 352 (799)
... .+.+...+..++..... ..+.|+++||+|.+++.. -.
T Consensus 90 ~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~--------------rQ 155 (408)
T KOG2228|consen 90 QTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS--------------RQ 155 (408)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch--------------hh
Confidence 111 11122222222222221 123466678999988421 12
Q ss_pred HHHHHHHHHhccccCCccCCCCEEEEEecCCCC---ccchhhhccCceeEE-Eec-cCCCHHHHHHHHHHHh
Q 003743 353 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFH-VQL-PAPAASERKAILEHEI 419 (799)
Q Consensus 353 ~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~---~ld~aL~r~gRf~~~-i~~-~~p~~~er~~Il~~~l 419 (799)
..|.+++|-..+... |+.+|+.|.+.+ .+....++ ||... |++ |....++...+++..+
T Consensus 156 tllYnlfDisqs~r~------Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 156 TLLYNLFDISQSARA------PICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcCC------CeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 345566665554332 688998888755 45678888 99865 554 4445788889988776
No 484
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.95 E-value=2.6e-05 Score=75.54 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=47.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh----------------------hcc-cH-HHHHHHHHHh
Q 003743 546 VLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----------------------IGA-SE-QAVRDIFSKA 598 (799)
Q Consensus 546 vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~----------------------~g~-se-~~i~~~f~~a 598 (799)
++++||||+|||+++..++... +.+++.++........ ... .. .........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5667776665432211 000 01 1112234455
Q ss_pred HhcCCeEEEEcccccccCC
Q 003743 599 TAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 599 ~~~~p~ILfiDEid~l~~~ 617 (799)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678889999999988643
No 485
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.95 E-value=5.7e-05 Score=77.12 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=52.7
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccch-----------------------hhHH
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-----------------------PIIR 306 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~-----------------------~~~~ 306 (799)
-|+|.+.-++++||||||||+++..++....... ..++++++..+..... ....
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQG 83 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHH
Confidence 4789999999999999999999998887654222 4566676654211000 0111
Q ss_pred HHHHHHHHHHHhcCCcEEEEccccccc
Q 003743 307 QALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 307 ~~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
..+..+...+....+.+|+||-+..+.
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSis~l~ 110 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSFTALY 110 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCcHHHh
Confidence 123333333444578899999999886
No 486
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.95 E-value=1.4e-05 Score=95.90 Aligned_cols=165 Identities=19% Similarity=0.249 Sum_probs=103.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcc-------cHHHHHHHHHHh-----HhcCCeEEEEcccc
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGA-------SEQAVRDIFSKA-----TAAAPCLLFFDEFD 612 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~-------se~~i~~~f~~a-----~~~~p~ILfiDEid 612 (799)
.++++||||+|||+.+.++|..++..+++.|+++..+++... +...+...|..- ....-.||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 379999999999999999999999999999999876554321 112233333100 11112389999999
Q ss_pred cccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc
Q 003743 613 SIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 613 ~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
-++.. + ...+..+.... ....+-+|+++|.........+. |-+..++|+.|+..++..-+..++..
T Consensus 439 ~~~~~---d-----Rg~v~~l~~l~----~ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 439 GMFGE---D-----RGGVSKLSSLC----KKSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred cccch---h-----hhhHHHHHHHH----HhccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcc
Confidence 98752 1 11222222222 12334466778877664443333 55577899999999888777666654
Q ss_pred CCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 003743 693 LPLADDVDLEAIAHMTEGFSGADLQALLSDAQLS 726 (799)
Q Consensus 693 ~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~ 726 (799)
..+- ++-..+..+.. .+++||+++...-...
T Consensus 505 e~~k--i~~~~l~~~s~-~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 505 EGIK--ISDDVLEEISK-LSGGDIRQIIMQLQFW 535 (871)
T ss_pred ccee--cCcHHHHHHHH-hcccCHHHHHHHHhhh
Confidence 4332 34444444444 5589999877654443
No 487
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.95 E-value=2.4e-05 Score=70.82 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhCC
Q 003743 546 VLLYGPPGCGKTHIVGAAAAACS 568 (799)
Q Consensus 546 vLL~GppGtGKT~la~alA~~~~ 568 (799)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987664
No 488
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.94 E-value=0.00019 Score=68.04 Aligned_cols=31 Identities=35% Similarity=0.589 Sum_probs=26.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCC
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHK 283 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~ 283 (799)
+....+.+.||||+|||+++.-++..+....
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 3456699999999999999999999988553
No 489
>PF05729 NACHT: NACHT domain
Probab=97.91 E-value=6.4e-05 Score=73.12 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=72.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCC---------CeEEEEeccchhhh------------hhcccHHHHHHHH-HHhHhcC
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKGPELLNK------------YIGASEQAVRDIF-SKATAAA 602 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~---------~~~i~i~~~~l~~~------------~~g~se~~i~~~f-~~a~~~~ 602 (799)
-++++|+||+|||++++.++..+. .-++.+.+.+.... ........+...+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999997651 11233333332211 0011111122211 1223455
Q ss_pred CeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC-ccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHH
Q 003743 603 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-VEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRE 681 (799)
Q Consensus 603 p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~-~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~ 681 (799)
+.+|+||-+|.+...... ....+....+...+.. ....-.++|.+.+.....+...+.. ...+.+++.+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCHHH
Confidence 678999999999653221 1111222223233332 1222333333222222122222222 1467888889999
Q ss_pred HHHHHHHHHcc
Q 003743 682 RLDILKVISRK 692 (799)
Q Consensus 682 r~~Il~~~~~~ 692 (799)
+.++++.+++.
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 490
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.90 E-value=0.00021 Score=91.16 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=96.8
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
..++.++|++..++++...+ .. .....+-+-|+||+|+||||+|+++++.+...... .++++..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL----~l---------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~~~ 244 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLL----HL---------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFIDRA 244 (1153)
T ss_pred cccccccchHHHHHHHHHHH----cc---------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEeecc
Confidence 34677889887777766543 21 13346779999999999999999999887643321 1122110
Q ss_pred c------cccc----ch----hhHHHHHHH-------------HHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhH
Q 003743 296 R------LSLE----KG----PIIRQALSN-------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSV 348 (799)
Q Consensus 296 ~------l~~~----~~----~~~~~~l~~-------------~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~ 348 (799)
. .... .. ......+.. .+.......+.+|+|||++..
T Consensus 245 ~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~---------------- 308 (1153)
T PLN03210 245 FISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ---------------- 308 (1153)
T ss_pred ccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------
Confidence 0 0000 00 000011111 111222345678999998653
Q ss_pred HHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCC-
Q 003743 349 IALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS- 427 (799)
Q Consensus 349 ~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~- 427 (799)
.....+....+. .+.+.. ||.||... .+.+...++..+.++.|+.++..++|..++-+....-.
T Consensus 309 -~~l~~L~~~~~~--------~~~Gsr-IIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~ 373 (1153)
T PLN03210 309 -DVLDALAGQTQW--------FGSGSR-IIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDG 373 (1153)
T ss_pred -HHHHHHHhhCcc--------CCCCcE-EEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHH
Confidence 122333222111 112223 44455532 23332245668899999999999999877644322211
Q ss_pred -HHHHHHHHhhcCCCC
Q 003743 428 -DEILLDVASKCDGYD 442 (799)
Q Consensus 428 -~~~l~~la~~~~g~s 442 (799)
.+....+++.+.|..
T Consensus 374 ~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 374 FMELASEVALRAGNLP 389 (1153)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 123556777777754
No 491
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.87 E-value=6.7e-05 Score=72.62 Aligned_cols=74 Identities=28% Similarity=0.409 Sum_probs=44.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccc------------------------hhhHHHHHHHHH
Q 003743 258 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------GPIIRQALSNFI 313 (799)
Q Consensus 258 vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~------------------------~~~~~~~l~~~~ 313 (799)
++|+||||+|||+++..++..+.... ..++++++....... ............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHH
Confidence 78999999999999999998875322 334444432211100 000111111223
Q ss_pred HHHHhcCCcEEEEcccccccc
Q 003743 314 SEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 314 ~~a~~~~p~IL~IDEiD~l~~ 334 (799)
..+....+.+++|||+..+..
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHH
Confidence 344456788999999998863
No 492
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.86 E-value=5.1e-05 Score=87.34 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=91.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh-----hcccHHH-------HHHHHHHhHhcCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQA-------VRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~-----~g~se~~-------i~~~f~~a~~~~p~ILfi 608 (799)
..+++.|.+||||+++|+++.... +.+|+.++|..+.... .|..... ....|..| ....|||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQA---DGGTLFL 234 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEEC---CCCeEEE
Confidence 469999999999999999998765 5789999998763221 1110000 01112222 2358999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCCCC-------ccChhhcCCCCcc-ee
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPD-------LLDAALLRPGRLD-RL 671 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~~~-------~ld~al~r~gRf~-~~ 671 (799)
|||+.|. ..++..|+..++.-. . ...+-||++|+..- .+.+.+.. |+. ..
T Consensus 235 ~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~ 301 (463)
T TIGR01818 235 DEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIR 301 (463)
T ss_pred EchhhCC-----------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcce
Confidence 9999984 345556666654211 0 11355777776532 13334443 443 35
Q ss_pred eecCCCC--HHHHHHHHHHHHccC----CCC-CcccHHHHHHHCC-CCc--HHHHHHHHHHHHHH
Q 003743 672 LFCDFPS--PRERLDILKVISRKL----PLA-DDVDLEAIAHMTE-GFS--GADLQALLSDAQLS 726 (799)
Q Consensus 672 i~~~~p~--~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~-g~s--g~di~~~~~~a~~~ 726 (799)
|++|+.. .++...+++.++... +.. ..++.+.+..... ++. -+++++++..+...
T Consensus 302 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 302 IHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 5666654 445555655554332 111 2344444444332 232 36666666655543
No 493
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00022 Score=75.86 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=81.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCce------------------eeEEEEEecccccccchhhHHHHHHHHHH
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFIS 314 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~ 314 (799)
..+..+||+|| +||+++|+.+|+.+...... ...+..+.... . ...-+.++++..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~---~--~I~idqIR~l~~ 94 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG---Q--VIKTDTIRELVK 94 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC---C--cCCHHHHHHHHH
Confidence 34567999996 68999999999987632110 01122222211 0 111223444444
Q ss_pred HHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchh
Q 003743 315 EAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQS 390 (799)
Q Consensus 315 ~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~a 390 (799)
.+. .+...|++||++|.+.. ...+.|+..+++-.. .+++|.+|+.++.+.|.
T Consensus 95 ~~~~~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEEPp~---------~t~~iL~t~~~~~lLpT 150 (290)
T PRK07276 95 NFSQSGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEEPQS---------EIYIFLLTNDENKVLPT 150 (290)
T ss_pred HHhhCcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhCchH
Confidence 332 23446999999999962 455667777776332 47888888889999999
Q ss_pred hhccCceeEEEeccCCCHHHHHHHHH
Q 003743 391 LTSSGRFDFHVQLPAPAASERKAILE 416 (799)
Q Consensus 391 L~r~gRf~~~i~~~~p~~~er~~Il~ 416 (799)
+++ |.. .|.|+. +.++..+++.
T Consensus 151 I~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 151 IKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred HHH--cce-eeeCCC-cHHHHHHHHH
Confidence 999 775 788866 5555555554
No 494
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.84 E-value=5e-05 Score=79.82 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=93.6
Q ss_pred cCccccCcEEEEEecCCCCc-cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC---C-CCCcccHHHHHHHCCCCc
Q 003743 638 DGVEVLTGVFVFAATSRPDL-LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL---P-LADDVDLEAIAHMTEGFS 712 (799)
Q Consensus 638 d~~~~~~~vlvi~ttn~~~~-ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~---~-~~~~~~~~~la~~~~g~s 712 (799)
..++.+.-++|-+||.+|.. +.+|+++ |. +++.+.+.+.++...+++..+... + ..-.++.+.+..++. ++
T Consensus 2 p~vE~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~-~a 77 (300)
T PRK14700 2 PYVESGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN-YN 77 (300)
T ss_pred CCccCCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH-hc
Confidence 34556666777788888887 9999999 55 678999999999999998877531 1 112345555555554 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 003743 713 GADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQ 787 (799)
Q Consensus 713 g~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 787 (799)
++|.+.+++..-. |+ .... ......||.+++++.+.+.. ...++.-..+|+..+.|++|.|+.++.
T Consensus 78 ~GDaR~aLN~LE~-a~----~~~~---~~~~~~it~~~~~~~~~~~~-~~yDk~gd~HYd~iSAf~KSiRGSDpD 143 (300)
T PRK14700 78 EGDCRKILNLLER-MF----LIST---RGDEIYLNKELFDQAVGETS-RDFHREGKEFYEQLSAFHKSVRGTDPD 143 (300)
T ss_pred CCHHHHHHHHHHH-HH----hhcc---ccCCCccCHHHHHHHHhHHH-hcccCCcchhHHHHHHHHHHhhcCCcc
Confidence 6798887773322 11 1010 11123599999999886543 345566677999999999999987643
No 495
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.82 E-value=5e-05 Score=77.54 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=65.5
Q ss_pred CCCCCCCceeeecCCCCcHHHHHHHHHHh---CCCeEEEEeccchhh-hhh---c-------------------ccHHHH
Q 003743 538 APLRLRSNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGPELLN-KYI---G-------------------ASEQAV 591 (799)
Q Consensus 538 ~~~~~~~~vLL~GppGtGKT~la~alA~~---~~~~~i~i~~~~l~~-~~~---g-------------------~se~~i 591 (799)
-|++...-++++||||||||+++..++.. .+.+++.++..++.. .+. . +....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 35666777999999999999999888753 366788888764210 000 0 001123
Q ss_pred HHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecC
Q 003743 592 RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 592 ~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
..+.+.+....|++|+||-+..+......+......+.+..++..|..+....++.++.|..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 33444445557899999999988642111111111223333333343333455566666543
No 496
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.80 E-value=6.4e-05 Score=68.09 Aligned_cols=24 Identities=58% Similarity=0.886 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Q 003743 258 ILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 258 vLL~GppGtGKT~la~alA~~l~~ 281 (799)
|.||||||+|||++++.||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998874
No 497
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.80 E-value=0.00012 Score=82.63 Aligned_cols=203 Identities=15% Similarity=0.138 Sum_probs=113.4
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...+.+|.|.+.+|..|.=.+.--+.+.. -....+...-||+++|.||||||-+.++.+..+.. -++++.
T Consensus 341 ~Sl~PsIyGhe~VK~GilL~LfGGv~K~a---~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR-------~vYtsG 410 (764)
T KOG0480|consen 341 NSLFPSIYGHELVKAGILLSLFGGVHKSA---GEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR-------SVYTSG 410 (764)
T ss_pred HhhCccccchHHHHhhHHHHHhCCccccC---CCCccccCCceEEEeCCCCccHHHHHHHHhccCCc-------ceEecC
Confidence 55678889999888887644322221111 12222333458999999999999999999988752 222221
Q ss_pred -----cccccc-----chhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH---
Q 003743 295 -----SRLSLE-----KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE--- 361 (799)
Q Consensus 295 -----s~l~~~-----~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~--- 361 (799)
+.+... ..++. .+.. ..+.....+|..|||+|.+-. .-...|.+.|+.
T Consensus 411 kaSSaAGLTaaVvkD~esgdf--~iEA--GALmLADnGICCIDEFDKMd~---------------~dqvAihEAMEQQtI 471 (764)
T KOG0480|consen 411 KASSAAGLTAAVVKDEESGDF--TIEA--GALMLADNGICCIDEFDKMDV---------------KDQVAIHEAMEQQTI 471 (764)
T ss_pred cccccccceEEEEecCCCCce--eeec--CcEEEccCceEEechhcccCh---------------HhHHHHHHHHHhhee
Confidence 111100 00000 0000 000113567999999999851 112334445543
Q ss_pred -hccccCCccCCCCEEEEEecCCCC-------------ccchhhhccCceeEE-EeccCCCHHHHHHHHHHHhhhcccCC
Q 003743 362 -YGEKRKSSCGIGPIAFVASAQSLE-------------KIPQSLTSSGRFDFH-VQLPAPAASERKAILEHEIQRRSLEC 426 (799)
Q Consensus 362 -~~~~~~~~~~~~~v~vI~ttn~~~-------------~ld~aL~r~gRf~~~-i~~~~p~~~er~~Il~~~l~~~~~~~ 426 (799)
....+-...-.-+.-|+|++|+.. .+++++++ |||.. |-++.|++..=..|.++.+..+.. +
T Consensus 472 SIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~-i 548 (764)
T KOG0480|consen 472 SIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRG-I 548 (764)
T ss_pred hheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcc-c
Confidence 222111111122456788888843 36789999 99965 477999998888888877765322 1
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+ ........|+..+++..+.-|.
T Consensus 549 ~-----~~~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 549 D-----DATERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred c-----ccccccccccHHHHHHHHHHHH
Confidence 1 1112224567666666655443
No 498
>PHA02774 E1; Provisional
Probab=97.79 E-value=0.00014 Score=82.85 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=66.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLD 330 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD 330 (799)
++|..+.++||||||||||+|+.+|++.++. ..+.++|...-. .+..+ ....|++|||+-
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G-----~vi~fvN~~s~F-------------wLqpl--~d~ki~vlDD~t 489 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG-----KVISFVNSKSHF-------------WLQPL--ADAKIALLDDAT 489 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEECcccc-------------ccchh--ccCCEEEEecCc
Confidence 5676788999999999999999999999861 223335542100 01222 233599999992
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCCCCccc---hhhhccCceeEEEec
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRFDFHVQL 403 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~~~ld---~aL~r~gRf~~~i~~ 403 (799)
.-+ -.-+...|.+++|+.. .+..........-+|.|||..-.-+ ..|.+ |+. .++|
T Consensus 490 ~~~--------------w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~s--Ri~-~f~F 552 (613)
T PHA02774 490 HPC--------------WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHS--RIT-VFEF 552 (613)
T ss_pred chH--------------HHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhh--hEE-EEEC
Confidence 221 0123345677777652 1112222222234666777522222 34555 665 5566
Q ss_pred cCC
Q 003743 404 PAP 406 (799)
Q Consensus 404 ~~p 406 (799)
+.|
T Consensus 553 ~n~ 555 (613)
T PHA02774 553 PNP 555 (613)
T ss_pred CCC
Confidence 554
No 499
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.78 E-value=6.3e-05 Score=77.19 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=56.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccch-hhHHHHHHHHHHHH--------HhcCCc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNFISEA--------LDHAPS 322 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~-~~~~~~l~~~~~~a--------~~~~p~ 322 (799)
+..+.++||.||+|.|||.|++.+...-.........++.|||..+.+... ...-..++..|..+ +....+
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 455667999999999999999999876543333447899999999887653 11112223333222 123567
Q ss_pred EEEEccccccc
Q 003743 323 IVIFDNLDSII 333 (799)
Q Consensus 323 IL~IDEiD~l~ 333 (799)
+||+|||..+.
T Consensus 285 mlfldeigelg 295 (531)
T COG4650 285 MLFLDEIGELG 295 (531)
T ss_pred eEehHhhhhcC
Confidence 99999998875
No 500
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00024 Score=73.82 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=77.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCce----------------eeEEEEEecccccccchhhHHHHHHHHHHHH
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 316 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~----------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a 316 (799)
..+..+||+||+|+||..+|.++|+.+-..... ...+.++.... ..-.. +.++++....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~i----d~ir~l~~~l 79 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKK----EDALSIINKL 79 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCH----HHHHHHHHHH
Confidence 456679999999999999999999987532110 01111111111 01111 2233333332
Q ss_pred H----h-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhh
Q 003743 317 L----D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 391 (799)
Q Consensus 317 ~----~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL 391 (799)
. . ...-|++|+++|.+.. ...+.|+..+++-.. .+++|.+|+.++.+.|.+
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LEEPp~---------~t~fiLit~~~~~lLpTI 135 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLNK---------------QSANSLLKLIEEPPK---------NTYGIFTTRNENNILNTI 135 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhCH---------------HHHHHHHHhhcCCCC---------CeEEEEEECChHhCchHh
Confidence 1 1 2346999999999962 456667777776332 488999999999999999
Q ss_pred hccCceeEEEeccCC
Q 003743 392 TSSGRFDFHVQLPAP 406 (799)
Q Consensus 392 ~r~gRf~~~i~~~~p 406 (799)
++ |.. .+.|+.+
T Consensus 136 ~S--RCq-~~~~~~~ 147 (261)
T PRK05818 136 LS--RCV-QYVVLSK 147 (261)
T ss_pred hh--hee-eeecCCh
Confidence 99 865 5677776
Done!