Query 003743
Match_columns 799
No_of_seqs 624 out of 4462
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 02:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 6.8E-85 2.3E-89 772.1 32.0 545 215-782 200-767 (806)
2 1ypw_A Transitional endoplasmi 100.0 1.1E-62 3.9E-67 593.6 20.2 545 215-782 200-767 (806)
3 4b4t_J 26S protease regulatory 100.0 1.9E-48 6.5E-53 425.7 22.3 248 502-760 141-391 (405)
4 4b4t_I 26S protease regulatory 100.0 5.6E-48 1.9E-52 422.4 17.9 251 502-763 175-428 (437)
5 4b4t_L 26S protease subunit RP 100.0 1.5E-46 5E-51 417.7 23.2 255 502-767 174-431 (437)
6 4b4t_M 26S protease regulatory 100.0 2.2E-46 7.7E-51 415.9 24.0 251 502-763 174-427 (434)
7 4b4t_H 26S protease regulatory 100.0 3.9E-46 1.3E-50 411.8 23.3 249 501-760 201-452 (467)
8 4b4t_K 26S protease regulatory 100.0 4.5E-45 1.6E-49 405.2 24.9 251 502-763 165-420 (428)
9 3cf2_A TER ATPase, transitiona 100.0 2.2E-40 7.7E-45 392.1 20.1 259 504-762 199-463 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.7E-39 3E-43 347.0 28.0 274 504-780 7-321 (322)
11 3cf0_A Transitional endoplasmi 100.0 1.5E-38 5.3E-43 342.2 26.3 275 504-778 10-301 (301)
12 4b4t_J 26S protease regulatory 100.0 1.8E-38 6E-43 347.1 23.5 250 214-491 143-392 (405)
13 2x8a_A Nuclear valosin-contain 100.0 2.5E-38 8.5E-43 335.3 23.4 264 504-767 5-273 (274)
14 4b4t_I 26S protease regulatory 100.0 4.2E-38 1.4E-42 344.4 24.5 251 214-492 177-427 (437)
15 3eie_A Vacuolar protein sortin 100.0 8.7E-38 3E-42 339.6 25.3 275 503-780 12-320 (322)
16 4b4t_M 26S protease regulatory 100.0 1.4E-37 4.8E-42 345.3 23.8 252 214-493 176-427 (434)
17 2qp9_X Vacuolar protein sortin 100.0 3.5E-37 1.2E-41 339.0 25.2 275 503-780 45-353 (355)
18 4b4t_L 26S protease subunit RP 100.0 6.3E-37 2.2E-41 340.4 25.0 250 214-491 176-425 (437)
19 4b4t_K 26S protease regulatory 100.0 1.3E-36 4.6E-41 337.3 25.5 247 214-488 167-414 (428)
20 4b4t_H 26S protease regulatory 100.0 8.1E-37 2.8E-41 337.5 23.5 248 215-490 205-452 (467)
21 2zan_A Vacuolar protein sortin 100.0 2.1E-36 7.3E-41 342.3 24.7 275 503-780 128-443 (444)
22 1r6b_X CLPA protein; AAA+, N-t 100.0 5.8E-34 2E-38 344.4 25.7 453 214-731 181-719 (758)
23 3pxi_A Negative regulator of g 100.0 4.2E-33 1.4E-37 336.5 27.9 448 213-732 174-729 (758)
24 3b9p_A CG5977-PA, isoform A; A 100.0 3.3E-33 1.1E-37 299.9 22.8 274 504-780 16-294 (297)
25 3h4m_A Proteasome-activating n 100.0 4.3E-33 1.5E-37 297.1 23.2 266 503-779 11-281 (285)
26 3hu3_A Transitional endoplasmi 100.0 2.1E-33 7.2E-38 319.6 21.5 258 505-762 200-463 (489)
27 3d8b_A Fidgetin-like protein 1 100.0 3.5E-33 1.2E-37 307.5 22.1 274 504-780 79-356 (357)
28 2ce7_A Cell division protein F 100.0 7.1E-33 2.4E-37 312.6 25.0 245 504-760 11-258 (476)
29 3vfd_A Spastin; ATPase, microt 100.0 4.5E-32 1.5E-36 302.4 25.1 274 503-779 109-386 (389)
30 1lv7_A FTSH; alpha/beta domain 100.0 7.8E-32 2.7E-36 283.1 24.9 245 504-760 7-254 (257)
31 1qvr_A CLPB protein; coiled co 100.0 3.6E-31 1.2E-35 323.0 26.3 465 214-733 165-825 (854)
32 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.9E-31 9.9E-36 279.0 19.0 244 505-760 2-251 (262)
33 2dhr_A FTSH; AAA+ protein, hex 100.0 5.3E-31 1.8E-35 299.0 20.5 245 504-760 26-273 (499)
34 1ixz_A ATP-dependent metallopr 100.0 4.2E-30 1.4E-34 269.4 23.0 242 502-755 9-253 (254)
35 2x8a_A Nuclear valosin-contain 100.0 1.8E-29 6.3E-34 267.2 21.3 260 215-493 6-269 (274)
36 2r62_A Cell division protease 100.0 3.7E-31 1.3E-35 279.6 7.1 251 504-766 6-261 (268)
37 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.1E-29 2.8E-33 268.6 25.4 227 215-462 8-235 (322)
38 3hu3_A Transitional endoplasmi 100.0 1.4E-29 5E-34 288.0 19.6 279 215-516 200-484 (489)
39 3eie_A Vacuolar protein sortin 100.0 8.3E-29 2.8E-33 268.9 23.6 229 213-462 12-240 (322)
40 1iy2_A ATP-dependent metallopr 100.0 1.2E-28 4.1E-33 262.0 23.8 240 504-755 35-277 (278)
41 2qp9_X Vacuolar protein sortin 100.0 2.7E-28 9.2E-33 268.1 23.6 228 214-462 46-273 (355)
42 3cf0_A Transitional endoplasmi 100.0 6.3E-29 2.1E-33 267.2 17.8 260 215-491 11-284 (301)
43 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.2E-27 7.7E-32 249.3 23.0 250 215-491 2-252 (262)
44 2ce7_A Cell division protein F 100.0 4.4E-27 1.5E-31 265.4 26.0 248 214-490 11-258 (476)
45 3h4m_A Proteasome-activating n 99.9 7.7E-27 2.6E-31 248.7 23.5 248 215-490 13-260 (285)
46 1lv7_A FTSH; alpha/beta domain 99.9 1E-26 3.5E-31 244.1 23.4 249 211-488 4-252 (257)
47 2zan_A Vacuolar protein sortin 99.9 3.8E-27 1.3E-31 266.5 20.1 228 214-462 129-357 (444)
48 1ypw_A Transitional endoplasmi 99.9 3.1E-27 1E-31 285.0 20.0 258 504-761 199-462 (806)
49 2c9o_A RUVB-like 1; hexameric 99.9 4.1E-28 1.4E-32 275.7 8.6 368 215-758 33-437 (456)
50 3b9p_A CG5977-PA, isoform A; A 99.9 1.2E-25 4.1E-30 241.0 25.0 263 211-492 13-276 (297)
51 3d8b_A Fidgetin-like protein 1 99.9 1.6E-25 5.4E-30 246.4 24.6 259 214-492 79-338 (357)
52 3vfd_A Spastin; ATPase, microt 99.9 1.8E-25 6.3E-30 248.9 23.2 263 208-490 104-367 (389)
53 2dhr_A FTSH; AAA+ protein, hex 99.9 3.1E-25 1.1E-29 251.7 21.2 248 214-491 26-274 (499)
54 1ixz_A ATP-dependent metallopr 99.9 2.2E-24 7.6E-29 225.8 22.4 242 214-485 11-253 (254)
55 3t15_A Ribulose bisphosphate c 99.9 1.6E-25 5.5E-30 239.5 13.0 174 539-718 32-222 (293)
56 2r62_A Cell division protease 99.9 8.8E-27 3E-31 246.0 1.0 252 215-493 7-258 (268)
57 1iy2_A ATP-dependent metallopr 99.9 1.4E-23 4.9E-28 222.8 22.5 242 214-485 35-277 (278)
58 3t15_A Ribulose bisphosphate c 99.9 9.8E-23 3.3E-27 217.9 14.7 184 250-448 31-222 (293)
59 1g41_A Heat shock protein HSLU 99.9 3.4E-21 1.1E-25 214.3 22.3 389 219-770 15-442 (444)
60 2c9o_A RUVB-like 1; hexameric 99.9 7.7E-24 2.6E-28 240.5 -0.2 199 506-722 34-262 (456)
61 3syl_A Protein CBBX; photosynt 99.8 8.6E-21 2.9E-25 204.2 17.5 215 509-733 31-268 (309)
62 3syl_A Protein CBBX; photosynt 99.8 9.2E-21 3.1E-25 204.0 15.9 221 220-463 32-268 (309)
63 3cmw_A Protein RECA, recombina 99.8 2.8E-20 9.6E-25 233.9 11.7 150 505-655 1016-1218(1706)
64 3uk6_A RUVB-like 2; hexameric 99.8 5.6E-19 1.9E-23 194.8 17.0 218 506-758 41-330 (368)
65 1ofh_A ATP-dependent HSL prote 99.8 8.4E-19 2.9E-23 188.3 16.2 243 509-758 15-299 (310)
66 3m6a_A ATP-dependent protease 99.8 5.5E-19 1.9E-23 204.3 11.3 229 508-759 80-342 (543)
67 3pfi_A Holliday junction ATP-d 99.8 1.5E-17 5.1E-22 181.3 22.0 209 207-457 17-234 (338)
68 4akg_A Glutathione S-transfera 99.8 2.5E-18 8.7E-23 225.2 18.5 337 254-612 1266-1677(2695)
69 3pfi_A Holliday junction ATP-d 99.8 2.1E-17 7E-22 180.2 21.6 217 503-760 23-256 (338)
70 3uk6_A RUVB-like 2; hexameric 99.8 8.3E-18 2.8E-22 185.4 18.6 220 217-488 42-330 (368)
71 1g41_A Heat shock protein HSLU 99.8 2.4E-19 8.2E-24 199.4 5.8 169 509-686 15-188 (444)
72 3hws_A ATP-dependent CLP prote 99.7 3.9E-18 1.3E-22 188.0 13.6 240 510-755 16-346 (363)
73 1hqc_A RUVB; extended AAA-ATPa 99.7 6.9E-17 2.3E-21 174.8 20.9 236 504-779 7-262 (324)
74 1d2n_A N-ethylmaleimide-sensit 99.7 1.5E-17 5E-22 175.7 14.9 163 539-711 60-229 (272)
75 3pvs_A Replication-associated 99.7 2.9E-17 1E-21 184.9 17.9 234 504-785 21-270 (447)
76 1ofh_A ATP-dependent HSL prote 99.7 5.7E-17 2E-21 174.0 19.2 251 219-487 15-298 (310)
77 3m6a_A ATP-dependent protease 99.7 2.6E-17 9.1E-22 190.2 16.4 233 218-486 80-339 (543)
78 1d2n_A N-ethylmaleimide-sensit 99.7 5.2E-17 1.8E-21 171.5 17.2 207 219-454 33-246 (272)
79 3hws_A ATP-dependent CLP prote 99.7 5.4E-17 1.9E-21 178.8 17.7 234 220-462 16-327 (363)
80 2z4s_A Chromosomal replication 99.7 8.8E-17 3E-21 181.3 17.6 217 543-784 130-368 (440)
81 3te6_A Regulatory protein SIR3 99.7 3.8E-17 1.3E-21 174.7 12.4 198 542-756 44-313 (318)
82 1hqc_A RUVB; extended AAA-ATPa 99.7 3.9E-16 1.3E-20 168.8 20.4 201 214-455 7-216 (324)
83 4fcw_A Chaperone protein CLPB; 99.7 7.2E-16 2.4E-20 165.7 20.4 216 219-462 17-283 (311)
84 1um8_A ATP-dependent CLP prote 99.7 1.1E-16 3.9E-21 177.1 14.5 240 510-756 22-363 (376)
85 1l8q_A Chromosomal replication 99.7 5.1E-16 1.8E-20 168.2 18.9 216 506-757 8-239 (324)
86 3u61_B DNA polymerase accessor 99.7 1E-15 3.5E-20 165.8 20.4 192 208-453 15-219 (324)
87 2chg_A Replication factor C sm 99.7 2E-15 6.9E-20 152.9 20.8 201 504-756 12-224 (226)
88 2chg_A Replication factor C sm 99.7 2.4E-15 8.3E-20 152.2 21.1 200 209-454 7-208 (226)
89 4akg_A Glutathione S-transfera 99.7 9.6E-15 3.3E-19 191.7 31.6 138 543-692 1267-1433(2695)
90 2z4s_A Chromosomal replication 99.7 9.8E-16 3.4E-20 172.7 17.4 198 255-488 130-332 (440)
91 3bos_A Putative DNA replicatio 99.7 1.8E-15 6.3E-20 155.6 17.6 196 215-458 24-225 (242)
92 1jbk_A CLPB protein; beta barr 99.7 3.2E-16 1.1E-20 154.9 11.3 158 506-686 19-194 (195)
93 1sxj_A Activator 1 95 kDa subu 99.6 5.2E-16 1.8E-20 178.7 14.4 203 503-724 33-253 (516)
94 2v1u_A Cell division control p 99.6 4.5E-15 1.6E-19 164.0 21.2 221 508-758 18-276 (387)
95 3u61_B DNA polymerase accessor 99.6 2E-15 6.9E-20 163.4 17.7 181 503-721 20-214 (324)
96 3pvs_A Replication-associated 99.6 3.6E-15 1.2E-19 167.9 19.7 212 213-487 20-243 (447)
97 1l8q_A Chromosomal replication 99.6 4.3E-15 1.5E-19 160.8 19.6 174 254-456 36-214 (324)
98 1njg_A DNA polymerase III subu 99.6 5.3E-15 1.8E-19 151.7 19.3 203 504-756 18-249 (250)
99 1r6b_X CLPA protein; AAA+, N-t 99.6 4.1E-15 1.4E-19 179.6 20.6 244 506-778 183-457 (758)
100 3te6_A Regulatory protein SIR3 99.6 2.8E-15 9.7E-20 160.2 16.5 205 221-462 22-291 (318)
101 3pxi_A Negative regulator of g 99.6 5.1E-15 1.7E-19 178.6 20.3 214 219-462 491-729 (758)
102 2v1u_A Cell division control p 99.6 5.8E-15 2E-19 163.1 19.1 228 218-487 18-275 (387)
103 4fcw_A Chaperone protein CLPB; 99.6 1.2E-15 4.2E-20 163.9 13.3 208 509-733 17-284 (311)
104 1njg_A DNA polymerase III subu 99.6 6.2E-15 2.1E-19 151.2 17.9 198 209-454 13-232 (250)
105 3bos_A Putative DNA replicatio 99.6 6.7E-15 2.3E-19 151.4 18.1 204 506-756 25-241 (242)
106 3pxg_A Negative regulator of g 99.6 1.5E-15 5.2E-20 172.6 14.4 185 505-727 176-385 (468)
107 2qby_B CDC6 homolog 3, cell di 99.6 6.7E-15 2.3E-19 162.8 18.1 219 218-487 19-269 (384)
108 1sxj_A Activator 1 95 kDa subu 99.6 3.3E-15 1.1E-19 172.0 15.8 211 205-450 25-252 (516)
109 1in4_A RUVB, holliday junction 99.6 6.1E-14 2.1E-18 152.5 25.0 236 505-781 21-276 (334)
110 2qby_B CDC6 homolog 3, cell di 99.6 8.5E-15 2.9E-19 162.0 18.0 212 509-759 20-271 (384)
111 1um8_A ATP-dependent CLP prote 99.6 8.3E-15 2.8E-19 162.1 17.1 252 220-485 22-362 (376)
112 1sxj_D Activator 1 41 kDa subu 99.6 9.8E-15 3.3E-19 159.6 17.5 202 208-454 26-239 (353)
113 1jbk_A CLPB protein; beta barr 99.6 3E-15 1E-19 147.9 11.9 166 214-415 17-194 (195)
114 1iqp_A RFCS; clamp loader, ext 99.6 2.9E-14 1E-18 153.9 20.7 199 209-453 15-215 (327)
115 2chq_A Replication factor C sm 99.6 5.8E-15 2E-19 158.8 15.0 207 502-756 10-224 (319)
116 2r44_A Uncharacterized protein 99.6 1.6E-14 5.5E-19 156.8 18.2 210 508-758 26-297 (331)
117 1g8p_A Magnesium-chelatase 38 99.6 1.6E-14 5.3E-19 157.9 18.2 215 504-758 19-322 (350)
118 2chq_A Replication factor C sm 99.6 1E-14 3.4E-19 156.9 15.9 200 208-453 6-207 (319)
119 1in4_A RUVB, holliday junction 99.6 6.4E-14 2.2E-18 152.3 22.2 221 214-487 20-249 (334)
120 1sxj_D Activator 1 41 kDa subu 99.6 2.7E-14 9.1E-19 156.1 18.9 209 503-757 31-262 (353)
121 3vkg_A Dynein heavy chain, cyt 99.6 2.2E-14 7.4E-19 189.0 20.9 338 254-613 1303-1715(3245)
122 1sxj_B Activator 1 37 kDa subu 99.6 4.7E-14 1.6E-18 152.0 20.0 196 209-454 11-213 (323)
123 1qvr_A CLPB protein; coiled co 99.6 1.1E-14 3.7E-19 177.7 16.5 200 505-727 166-392 (854)
124 3pxg_A Negative regulator of g 99.6 3.9E-15 1.3E-19 169.2 11.6 194 213-457 174-385 (468)
125 2bjv_A PSP operon transcriptio 99.6 1.8E-14 6.3E-19 151.2 15.7 206 216-457 3-240 (265)
126 2r44_A Uncharacterized protein 99.6 5.8E-14 2E-18 152.4 18.6 218 215-488 23-297 (331)
127 1iqp_A RFCS; clamp loader, ext 99.6 3.8E-14 1.3E-18 153.0 17.0 177 503-710 19-203 (327)
128 1sxj_B Activator 1 37 kDa subu 99.6 7.7E-14 2.6E-18 150.3 19.0 172 504-710 16-200 (323)
129 2p65_A Hypothetical protein PF 99.6 1.1E-14 3.9E-19 143.2 11.4 151 506-678 19-187 (187)
130 1fnn_A CDC6P, cell division co 99.6 1.6E-13 5.3E-18 151.9 21.8 224 509-763 17-279 (389)
131 2qby_A CDC6 homolog 1, cell di 99.6 6.7E-14 2.3E-18 154.4 18.6 228 217-487 18-271 (386)
132 1sxj_E Activator 1 40 kDa subu 99.5 6.1E-14 2.1E-18 153.5 17.9 200 208-454 3-241 (354)
133 1fnn_A CDC6P, cell division co 99.5 1.6E-13 5.4E-18 151.8 21.1 226 218-487 16-273 (389)
134 1jr3_A DNA polymerase III subu 99.5 9.6E-14 3.3E-18 152.9 18.8 186 503-723 10-224 (373)
135 1g8p_A Magnesium-chelatase 38 99.5 8.5E-14 2.9E-18 152.0 17.1 228 215-488 20-322 (350)
136 2qby_A CDC6 homolog 1, cell di 99.5 8.3E-14 2.8E-18 153.6 17.2 220 508-758 19-272 (386)
137 1jr3_A DNA polymerase III subu 99.5 1.7E-13 5.9E-18 150.8 18.5 196 211-454 8-225 (373)
138 1ojl_A Transcriptional regulat 99.5 5.7E-14 2E-18 150.5 14.0 201 220-456 3-234 (304)
139 2p65_A Hypothetical protein PF 99.5 5E-14 1.7E-18 138.6 12.5 159 214-407 17-187 (187)
140 3cmw_A Protein RECA, recombina 99.5 1.4E-13 4.9E-18 173.5 18.3 160 214-384 1015-1218(1706)
141 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 6.4E-14 2.2E-18 159.1 13.7 152 510-690 23-196 (500)
142 1sxj_E Activator 1 40 kDa subu 99.5 8.5E-13 2.9E-17 144.4 18.4 176 502-710 7-228 (354)
143 1sxj_C Activator 1 40 kDa subu 99.5 7.3E-13 2.5E-17 144.3 17.6 208 503-757 19-238 (340)
144 3cmu_A Protein RECA, recombina 99.5 6.3E-13 2.1E-17 169.2 18.2 113 539-651 1423-1560(2050)
145 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.2E-13 4E-18 157.0 10.4 182 255-458 41-267 (500)
146 1sxj_C Activator 1 40 kDa subu 99.4 1.2E-12 4E-17 142.7 17.1 188 208-440 14-203 (340)
147 3f9v_A Minichromosome maintena 99.4 1.5E-13 5.2E-18 160.1 7.5 164 509-692 295-492 (595)
148 2bjv_A PSP operon transcriptio 99.4 2.6E-12 9E-17 134.7 14.6 192 507-725 4-238 (265)
149 1a5t_A Delta prime, HOLB; zinc 99.3 2.1E-11 7.2E-16 132.4 19.5 146 543-711 24-197 (334)
150 1a5t_A Delta prime, HOLB; zinc 99.3 1E-11 3.6E-16 134.8 15.9 161 254-450 23-205 (334)
151 1ojl_A Transcriptional regulat 99.3 2.4E-12 8.1E-17 137.9 10.2 188 510-724 3-232 (304)
152 3f9v_A Minichromosome maintena 99.3 3.3E-13 1.1E-17 157.3 3.7 142 253-421 325-492 (595)
153 2gno_A DNA polymerase III, gam 99.3 8E-12 2.7E-16 133.6 14.0 142 513-690 1-152 (305)
154 1w5s_A Origin recognition comp 99.3 8.4E-11 2.9E-15 131.0 21.3 216 218-458 21-274 (412)
155 3cmu_A Protein RECA, recombina 99.3 5.5E-12 1.9E-16 160.7 12.0 125 529-653 715-867 (2050)
156 3n70_A Transport activator; si 99.3 4.9E-12 1.7E-16 120.1 8.7 135 220-406 2-144 (145)
157 3n70_A Transport activator; si 99.3 2.5E-12 8.5E-17 122.1 6.3 112 510-655 2-116 (145)
158 3co5_A Putative two-component 99.3 2.2E-12 7.4E-17 122.3 4.6 112 510-655 5-116 (143)
159 3co5_A Putative two-component 99.2 1.5E-11 5E-16 116.5 7.5 132 220-406 5-142 (143)
160 3k1j_A LON protease, ATP-depen 99.2 2.4E-11 8.4E-16 142.4 11.0 216 503-757 35-374 (604)
161 1w5s_A Origin recognition comp 99.2 5.3E-10 1.8E-14 124.5 20.2 224 509-758 22-293 (412)
162 3vkg_A Dynein heavy chain, cyt 99.2 7.7E-10 2.6E-14 146.4 24.1 367 256-677 605-1056(3245)
163 3k1j_A LON protease, ATP-depen 99.1 7E-10 2.4E-14 130.0 19.1 139 319-485 200-372 (604)
164 2gno_A DNA polymerase III, gam 99.1 1.2E-10 4E-15 124.5 10.6 131 255-419 18-152 (305)
165 2krk_A 26S protease regulatory 99.1 1.1E-10 3.8E-15 99.8 6.3 78 673-761 7-84 (86)
166 3kw6_A 26S protease regulatory 99.1 3.6E-10 1.2E-14 95.0 8.2 75 675-760 1-75 (78)
167 3vlf_B 26S protease regulatory 99.0 2.8E-10 9.4E-15 98.0 7.4 78 678-766 2-79 (88)
168 3aji_B S6C, proteasome (prosom 99.0 1.8E-10 6.1E-15 98.2 5.4 79 678-768 2-80 (83)
169 1ny5_A Transcriptional regulat 99.0 9.7E-10 3.3E-14 121.6 11.0 204 218-457 136-370 (387)
170 3dzd_A Transcriptional regulat 98.9 4E-09 1.4E-13 115.8 11.2 201 219-456 129-360 (368)
171 3ec2_A DNA replication protein 98.9 4.2E-09 1.4E-13 103.3 8.6 105 215-332 6-112 (180)
172 2qen_A Walker-type ATPase; unk 98.9 1.9E-07 6.5E-12 101.0 22.5 190 216-451 9-247 (350)
173 3ec2_A DNA replication protein 98.8 9.4E-09 3.2E-13 100.8 8.8 98 505-614 6-112 (180)
174 2fna_A Conserved hypothetical 98.8 2.3E-07 8E-12 100.5 20.7 185 217-452 11-252 (357)
175 2kjq_A DNAA-related protein; s 98.8 6.8E-09 2.3E-13 98.7 6.8 104 543-674 36-145 (149)
176 2kjq_A DNAA-related protein; s 98.8 2.1E-08 7.2E-13 95.4 10.1 62 254-333 35-96 (149)
177 2dzn_B 26S protease regulatory 98.8 1.6E-09 5.5E-14 91.9 2.0 78 680-768 1-79 (82)
178 2vhj_A Ntpase P4, P4; non- hyd 98.8 3.5E-09 1.2E-13 112.1 4.6 121 539-662 119-242 (331)
179 1tue_A Replication protein E1; 98.7 3.3E-08 1.1E-12 97.7 9.3 119 251-407 54-180 (212)
180 3f8t_A Predicted ATPase involv 98.6 3E-07 1E-11 101.6 15.9 212 511-759 215-484 (506)
181 2w58_A DNAI, primosome compone 98.6 2.7E-08 9.4E-13 99.3 7.1 107 215-333 21-128 (202)
182 2r2a_A Uncharacterized protein 98.6 5.7E-08 1.9E-12 96.9 8.2 126 545-679 7-155 (199)
183 1ny5_A Transcriptional regulat 98.6 1.2E-07 4.1E-12 104.7 11.6 181 544-755 161-384 (387)
184 2fna_A Conserved hypothetical 98.6 9.3E-07 3.2E-11 95.7 17.9 185 507-720 11-250 (357)
185 2vhj_A Ntpase P4, P4; non- hyd 98.6 4.8E-08 1.6E-12 103.4 7.0 78 251-334 119-196 (331)
186 3f8t_A Predicted ATPase involv 98.6 8.1E-07 2.8E-11 98.2 16.1 190 256-486 240-481 (506)
187 2w58_A DNAI, primosome compone 98.5 1.4E-07 4.7E-12 94.2 8.7 70 544-615 55-128 (202)
188 2qen_A Walker-type ATPase; unk 98.5 2.1E-06 7.3E-11 92.6 18.8 187 507-720 10-246 (350)
189 2r2a_A Uncharacterized protein 98.5 5.8E-08 2E-12 96.8 5.6 132 255-408 5-155 (199)
190 1jr3_D DNA polymerase III, del 98.5 1.1E-06 3.8E-11 95.3 15.4 167 254-454 17-189 (343)
191 2qgz_A Helicase loader, putati 98.5 1.3E-07 4.3E-12 101.2 6.6 106 215-333 120-227 (308)
192 1u0j_A DNA replication protein 98.5 8.6E-07 2.9E-11 91.6 12.1 132 253-425 102-256 (267)
193 1svm_A Large T antigen; AAA+ f 98.4 1.8E-07 6.3E-12 102.3 5.8 119 539-676 165-284 (377)
194 2qgz_A Helicase loader, putati 98.4 1.2E-07 4.2E-12 101.3 3.7 70 543-614 152-226 (308)
195 3dzd_A Transcriptional regulat 98.4 2.1E-06 7.2E-11 94.0 13.6 160 544-720 153-351 (368)
196 1svm_A Large T antigen; AAA+ f 98.3 3.3E-07 1.1E-11 100.3 5.6 120 250-405 164-284 (377)
197 2krk_A 26S protease regulatory 98.3 3.2E-07 1.1E-11 78.2 3.7 77 402-490 7-83 (86)
198 1tf7_A KAIC; homohexamer, hexa 98.3 7.7E-05 2.6E-09 85.6 23.6 78 539-616 277-385 (525)
199 3kw6_A 26S protease regulatory 98.2 7.2E-07 2.5E-11 74.6 4.7 74 404-489 1-74 (78)
200 1tue_A Replication protein E1; 98.2 9.9E-07 3.4E-11 87.1 5.7 32 541-572 56-87 (212)
201 1jr3_D DNA polymerase III, del 98.2 9.9E-06 3.4E-10 87.7 13.8 177 543-758 18-209 (343)
202 1ye8_A Protein THEP1, hypothet 98.0 3.7E-05 1.3E-09 75.0 12.3 24 257-280 2-25 (178)
203 1ye8_A Protein THEP1, hypothet 98.0 2.5E-05 8.6E-10 76.3 10.9 27 545-571 2-28 (178)
204 3vlf_B 26S protease regulatory 98.0 3.2E-06 1.1E-10 72.4 3.4 74 407-492 2-75 (88)
205 3aji_B S6C, proteasome (prosom 98.0 4.5E-06 1.5E-10 70.6 3.9 76 406-493 1-76 (83)
206 1u0j_A DNA replication protein 97.9 1.9E-05 6.6E-10 81.5 8.9 28 542-569 103-130 (267)
207 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00018 6.2E-09 72.5 11.9 30 251-280 19-48 (235)
208 3hr8_A Protein RECA; alpha and 97.7 0.00017 5.7E-09 78.1 11.3 81 251-334 57-153 (356)
209 2cvh_A DNA repair and recombin 97.7 0.00025 8.5E-09 71.0 11.9 39 251-295 16-54 (220)
210 1n0w_A DNA repair protein RAD5 97.7 0.00019 6.6E-09 73.0 11.2 83 251-333 20-132 (243)
211 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00012 4.2E-09 73.8 9.0 38 539-576 19-59 (235)
212 1n0w_A DNA repair protein RAD5 97.6 0.00011 3.7E-09 74.9 8.5 79 539-617 20-134 (243)
213 1xp8_A RECA protein, recombina 97.5 0.00018 6.3E-09 78.3 9.5 113 539-651 70-207 (366)
214 3hr8_A Protein RECA; alpha and 97.5 0.00019 6.5E-09 77.6 9.5 112 539-650 57-193 (356)
215 1z6t_A APAF-1, apoptotic prote 97.5 0.0012 4E-08 76.8 16.5 180 214-447 119-325 (591)
216 2a5y_B CED-4; apoptosis; HET: 97.5 0.0018 6.2E-08 74.6 17.8 170 222-442 131-330 (549)
217 2zr9_A Protein RECA, recombina 97.5 0.00012 4E-09 79.4 6.7 78 539-616 57-153 (349)
218 2zr9_A Protein RECA, recombina 97.4 0.00042 1.4E-08 75.0 10.7 80 251-333 57-152 (349)
219 2z43_A DNA repair and recombin 97.4 0.0004 1.4E-08 74.4 10.5 84 251-334 103-217 (324)
220 1xp8_A RECA protein, recombina 97.4 0.00062 2.1E-08 74.0 12.0 81 251-334 70-166 (366)
221 2cvh_A DNA repair and recombin 97.4 0.00022 7.4E-09 71.4 7.5 40 539-578 16-55 (220)
222 2ehv_A Hypothetical protein PH 97.4 0.00054 1.9E-08 69.9 10.3 27 251-277 26-52 (251)
223 2r8r_A Sensor protein; KDPD, P 97.4 0.0026 8.8E-08 63.9 14.3 33 544-576 7-42 (228)
224 1u94_A RECA protein, recombina 97.3 0.00022 7.6E-09 77.3 7.0 78 539-616 59-155 (356)
225 2z43_A DNA repair and recombin 97.3 0.00026 9E-09 75.9 7.5 113 539-651 103-254 (324)
226 1v5w_A DMC1, meiotic recombina 97.3 0.0007 2.4E-08 73.2 10.7 84 251-334 118-233 (343)
227 1z6t_A APAF-1, apoptotic prote 97.3 0.0032 1.1E-07 73.1 17.1 169 507-712 122-321 (591)
228 1u94_A RECA protein, recombina 97.3 0.00074 2.5E-08 73.2 10.5 80 251-334 59-155 (356)
229 1v5w_A DMC1, meiotic recombina 97.3 0.00033 1.1E-08 75.7 7.3 114 539-652 118-271 (343)
230 4a74_A DNA repair and recombin 97.3 0.00067 2.3E-08 68.3 9.0 30 251-280 21-50 (231)
231 1qhx_A CPT, protein (chloramph 97.2 0.0005 1.7E-08 66.4 7.5 35 544-578 4-38 (178)
232 3upu_A ATP-dependent DNA helic 97.2 0.00074 2.5E-08 76.1 10.0 96 545-654 47-166 (459)
233 3lda_A DNA repair protein RAD5 97.2 0.0013 4.4E-08 72.4 11.5 85 250-334 173-287 (400)
234 3io5_A Recombination and repai 97.2 0.00078 2.7E-08 71.0 9.2 110 539-649 25-166 (333)
235 2dzn_B 26S protease regulatory 97.2 4.6E-05 1.6E-09 64.2 -0.2 69 409-489 1-69 (82)
236 2iut_A DNA translocase FTSK; n 97.2 0.0036 1.2E-07 71.3 15.1 74 322-416 345-420 (574)
237 2orw_A Thymidine kinase; TMTK, 97.2 0.00018 6.1E-09 70.6 3.8 68 545-614 5-88 (184)
238 1pzn_A RAD51, DNA repair and r 97.2 0.0012 4E-08 71.5 10.6 30 250-279 126-155 (349)
239 3io5_A Recombination and repai 97.2 0.0015 5E-08 68.9 10.6 82 251-334 25-125 (333)
240 2dr3_A UPF0273 protein PH0284; 97.1 0.0022 7.6E-08 65.1 11.7 30 250-279 18-47 (247)
241 3lda_A DNA repair protein RAD5 97.1 0.00084 2.9E-08 73.9 8.2 115 539-653 174-326 (400)
242 2ius_A DNA translocase FTSK; n 97.1 0.0091 3.1E-07 67.5 16.5 40 375-416 333-374 (512)
243 4a74_A DNA repair and recombin 97.0 0.00048 1.6E-08 69.4 5.4 40 539-578 21-69 (231)
244 3sfz_A APAF-1, apoptotic pepti 97.0 0.0039 1.3E-07 78.8 15.0 178 214-442 119-321 (1249)
245 2r8r_A Sensor protein; KDPD, P 97.0 0.01 3.4E-07 59.6 14.8 28 256-283 7-34 (228)
246 2orw_A Thymidine kinase; TMTK, 97.0 0.00097 3.3E-08 65.2 7.2 25 255-279 3-27 (184)
247 2i1q_A DNA repair and recombin 97.0 0.0018 6E-08 69.3 9.8 29 251-279 94-122 (322)
248 1vma_A Cell division protein F 97.0 0.0028 9.4E-08 67.2 11.0 53 227-282 79-131 (306)
249 3dm5_A SRP54, signal recogniti 97.0 0.0026 8.9E-08 70.5 11.1 72 543-614 100-194 (443)
250 1qhx_A CPT, protein (chloramph 97.0 0.00042 1.4E-08 66.9 3.9 26 255-280 3-28 (178)
251 3vaa_A Shikimate kinase, SK; s 97.0 0.00042 1.5E-08 68.5 4.0 29 252-280 22-50 (199)
252 3e1s_A Exodeoxyribonuclease V, 97.0 0.0006 2.1E-08 78.8 5.8 98 544-655 205-318 (574)
253 1nlf_A Regulatory protein REPA 97.0 0.0046 1.6E-07 64.5 12.1 31 251-281 26-56 (279)
254 2fz4_A DNA repair protein RAD2 97.0 0.0025 8.6E-08 64.9 9.8 33 545-577 110-142 (237)
255 1pzn_A RAD51, DNA repair and r 96.9 0.00095 3.2E-08 72.3 6.9 40 539-578 127-175 (349)
256 2eyu_A Twitching motility prot 96.9 0.00057 2E-08 70.8 4.9 29 252-280 22-50 (261)
257 3sfz_A APAF-1, apoptotic pepti 96.9 0.01 3.5E-07 74.8 17.4 169 507-712 122-321 (1249)
258 2zts_A Putative uncharacterize 96.9 0.0026 9E-08 64.7 9.5 28 251-278 26-53 (251)
259 3trf_A Shikimate kinase, SK; a 96.9 0.00043 1.5E-08 67.4 3.2 32 544-575 6-37 (185)
260 2b8t_A Thymidine kinase; deoxy 96.9 0.0041 1.4E-07 62.6 10.5 27 255-281 12-38 (223)
261 3trf_A Shikimate kinase, SK; a 96.8 0.00056 1.9E-08 66.5 3.8 26 255-280 5-30 (185)
262 2ehv_A Hypothetical protein PH 96.8 0.0017 5.9E-08 66.1 7.6 26 539-564 26-51 (251)
263 2iut_A DNA translocase FTSK; n 96.8 0.0039 1.3E-07 71.0 11.0 74 604-687 345-420 (574)
264 3jvv_A Twitching mobility prot 96.8 0.00069 2.4E-08 73.4 4.5 74 254-329 122-205 (356)
265 3vaa_A Shikimate kinase, SK; s 96.8 0.00053 1.8E-08 67.8 3.3 34 542-575 24-57 (199)
266 2rhm_A Putative kinase; P-loop 96.8 0.00086 2.9E-08 65.5 4.7 29 252-280 2-30 (193)
267 3dm5_A SRP54, signal recogniti 96.8 0.0044 1.5E-07 68.7 10.8 101 225-331 73-193 (443)
268 2dr3_A UPF0273 protein PH0284; 96.8 0.0026 9E-08 64.5 8.4 39 539-577 19-60 (247)
269 3kl4_A SRP54, signal recogniti 96.8 0.0085 2.9E-07 66.4 12.9 57 225-283 69-125 (433)
270 2p5t_B PEZT; postsegregational 96.8 0.0023 7.8E-08 65.9 7.8 29 252-280 29-57 (253)
271 3jvv_A Twitching mobility prot 96.8 0.00088 3E-08 72.6 4.8 98 543-658 123-234 (356)
272 3upu_A ATP-dependent DNA helic 96.7 0.0018 6E-08 72.9 7.4 61 207-282 12-72 (459)
273 2i1q_A DNA repair and recombin 96.7 0.0013 4.5E-08 70.3 6.0 113 539-651 94-255 (322)
274 3kl4_A SRP54, signal recogniti 96.7 0.0037 1.3E-07 69.3 9.5 72 543-614 97-191 (433)
275 1y63_A LMAJ004144AAA protein; 96.7 0.0011 3.7E-08 64.7 4.7 28 253-280 8-36 (184)
276 2b8t_A Thymidine kinase; deoxy 96.7 0.0021 7.1E-08 64.8 6.9 69 545-614 14-101 (223)
277 2eyu_A Twitching motility prot 96.7 0.0016 5.3E-08 67.5 6.0 72 541-612 23-108 (261)
278 2rhm_A Putative kinase; P-loop 96.7 0.00088 3E-08 65.4 4.0 33 542-574 4-36 (193)
279 1gvn_B Zeta; postsegregational 96.7 0.0029 9.8E-08 66.5 8.1 38 542-579 32-69 (287)
280 1zp6_A Hypothetical protein AT 96.7 0.00064 2.2E-08 66.4 2.9 30 251-280 5-34 (191)
281 2ewv_A Twitching motility prot 96.7 0.00095 3.3E-08 72.9 4.5 31 251-281 132-162 (372)
282 3bh0_A DNAB-like replicative h 96.7 0.015 5.2E-07 61.8 13.8 42 250-294 63-104 (315)
283 3iij_A Coilin-interacting nucl 96.7 0.00094 3.2E-08 64.7 4.0 32 543-574 11-42 (180)
284 3iij_A Coilin-interacting nucl 96.7 0.0012 4E-08 64.0 4.6 27 254-280 10-36 (180)
285 1gvn_B Zeta; postsegregational 96.7 0.0031 1E-07 66.3 8.2 28 253-280 31-58 (287)
286 3crm_A TRNA delta(2)-isopenten 96.7 0.001 3.5E-08 70.7 4.4 36 545-580 7-42 (323)
287 1y63_A LMAJ004144AAA protein; 96.6 0.001 3.5E-08 64.9 3.7 33 543-575 10-43 (184)
288 3kb2_A SPBC2 prophage-derived 96.6 0.00097 3.3E-08 63.7 3.5 31 545-575 3-33 (173)
289 1kag_A SKI, shikimate kinase I 96.6 0.0015 5E-08 62.7 4.7 26 255-280 4-29 (173)
290 1via_A Shikimate kinase; struc 96.6 0.0012 4.2E-08 63.6 4.1 30 545-574 6-35 (175)
291 3umf_A Adenylate kinase; rossm 96.6 0.0012 4.2E-08 66.2 4.0 30 251-280 25-54 (217)
292 2p5t_B PEZT; postsegregational 96.6 0.0027 9.3E-08 65.3 6.8 38 542-579 31-68 (253)
293 3kb2_A SPBC2 prophage-derived 96.6 0.0014 4.7E-08 62.6 4.2 24 257-280 3-26 (173)
294 1kag_A SKI, shikimate kinase I 96.6 0.0017 5.7E-08 62.3 4.8 30 544-573 5-34 (173)
295 1g5t_A COB(I)alamin adenosyltr 96.6 0.0056 1.9E-07 60.0 8.5 102 543-655 28-163 (196)
296 1zuh_A Shikimate kinase; alpha 96.5 0.001 3.4E-08 63.7 3.0 31 545-575 9-39 (168)
297 2ius_A DNA translocase FTSK; n 96.5 0.0054 1.8E-07 69.3 9.4 76 602-687 296-374 (512)
298 1via_A Shikimate kinase; struc 96.5 0.0018 6.1E-08 62.4 4.7 24 257-280 6-29 (175)
299 2iyv_A Shikimate kinase, SK; t 96.5 0.0011 3.8E-08 64.4 3.3 31 545-575 4-34 (184)
300 1nlf_A Regulatory protein REPA 96.5 0.0046 1.6E-07 64.5 8.1 28 539-566 26-53 (279)
301 2r6a_A DNAB helicase, replicat 96.5 0.005 1.7E-07 69.1 8.9 38 539-576 199-240 (454)
302 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.004 1.4E-07 64.3 7.3 37 544-580 5-44 (260)
303 2r6a_A DNAB helicase, replicat 96.5 0.013 4.5E-07 65.6 12.0 31 250-280 198-228 (454)
304 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0048 1.7E-07 63.7 7.7 26 255-280 4-29 (260)
305 2cdn_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 64.1 4.1 26 255-280 20-45 (201)
306 2iyv_A Shikimate kinase, SK; t 96.4 0.0014 5E-08 63.5 3.5 24 257-280 4-27 (184)
307 1zp6_A Hypothetical protein AT 96.4 0.0016 5.6E-08 63.5 3.8 38 542-579 8-45 (191)
308 1ly1_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 62.3 4.0 26 255-280 2-28 (181)
309 2i3b_A HCR-ntpase, human cance 96.4 0.0051 1.7E-07 60.3 7.2 138 543-693 1-187 (189)
310 1g5t_A COB(I)alamin adenosyltr 96.4 0.015 5.3E-07 56.9 10.5 28 255-282 28-55 (196)
311 3lw7_A Adenylate kinase relate 96.4 0.0015 5.3E-08 62.3 3.4 29 545-574 3-31 (179)
312 1tev_A UMP-CMP kinase; ploop, 96.4 0.0019 6.4E-08 63.0 4.1 26 255-280 3-28 (196)
313 3crm_A TRNA delta(2)-isopenten 96.4 0.0095 3.3E-07 63.2 9.6 26 255-280 5-30 (323)
314 1zuh_A Shikimate kinase; alpha 96.4 0.0018 6E-08 61.9 3.6 26 255-280 7-32 (168)
315 2c95_A Adenylate kinase 1; tra 96.4 0.002 7E-08 63.0 4.2 26 255-280 9-34 (196)
316 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0036 1.2E-07 67.1 6.4 47 223-280 3-49 (359)
317 1kht_A Adenylate kinase; phosp 96.4 0.002 7E-08 62.6 4.1 27 255-281 3-29 (192)
318 2ze6_A Isopentenyl transferase 96.4 0.0017 5.9E-08 66.9 3.7 33 545-577 3-35 (253)
319 3cm0_A Adenylate kinase; ATP-b 96.4 0.0022 7.7E-08 62.2 4.3 26 255-280 4-29 (186)
320 2px0_A Flagellar biosynthesis 96.4 0.027 9.4E-07 59.2 13.0 67 542-610 104-190 (296)
321 1aky_A Adenylate kinase; ATP:A 96.3 0.003 1E-07 63.3 5.2 26 255-280 4-29 (220)
322 4eun_A Thermoresistant glucoki 96.3 0.0032 1.1E-07 62.2 5.2 28 253-280 27-54 (200)
323 1vma_A Cell division protein F 96.3 0.0074 2.5E-07 63.9 8.3 72 542-613 103-197 (306)
324 1e6c_A Shikimate kinase; phosp 96.3 0.0022 7.7E-08 61.3 3.9 30 545-574 4-33 (173)
325 2c95_A Adenylate kinase 1; tra 96.3 0.0018 6.2E-08 63.3 3.4 32 544-575 10-41 (196)
326 2ze6_A Isopentenyl transferase 96.3 0.0022 7.4E-08 66.1 4.0 24 257-280 3-26 (253)
327 2cdn_A Adenylate kinase; phosp 96.3 0.0025 8.4E-08 62.9 4.3 31 544-574 21-51 (201)
328 3sr0_A Adenylate kinase; phosp 96.3 0.0021 7.2E-08 64.0 3.7 24 257-280 2-25 (206)
329 3lw7_A Adenylate kinase relate 96.3 0.003 1E-07 60.2 4.6 23 257-280 3-25 (179)
330 3e1s_A Exodeoxyribonuclease V, 96.3 0.0035 1.2E-07 72.4 6.0 28 255-282 204-231 (574)
331 1knq_A Gluconate kinase; ALFA/ 96.3 0.0034 1.2E-07 60.3 5.1 26 255-280 8-33 (175)
332 1aky_A Adenylate kinase; ATP:A 96.3 0.0025 8.7E-08 63.9 4.3 31 544-574 5-35 (220)
333 2bwj_A Adenylate kinase 5; pho 96.3 0.0023 8E-08 62.7 3.9 26 255-280 12-37 (199)
334 1zd8_A GTP:AMP phosphotransfer 96.3 0.002 7E-08 64.9 3.6 27 254-280 6-32 (227)
335 2ewv_A Twitching motility prot 96.3 0.0024 8.2E-08 69.7 4.3 73 540-612 133-219 (372)
336 3cm0_A Adenylate kinase; ATP-b 96.3 0.002 6.8E-08 62.5 3.3 31 544-574 5-35 (186)
337 1e6c_A Shikimate kinase; phosp 96.3 0.0032 1.1E-07 60.2 4.8 25 256-280 3-27 (173)
338 2px0_A Flagellar biosynthesis 96.3 0.017 5.8E-07 60.8 10.7 53 225-281 79-131 (296)
339 1w36_D RECD, exodeoxyribonucle 96.3 0.0098 3.3E-07 69.3 9.7 23 544-566 165-187 (608)
340 1tev_A UMP-CMP kinase; ploop, 96.2 0.0024 8.3E-08 62.2 3.9 30 544-573 4-33 (196)
341 1cr0_A DNA primase/helicase; R 96.2 0.0043 1.5E-07 65.3 6.0 37 539-575 31-71 (296)
342 1zd8_A GTP:AMP phosphotransfer 96.2 0.0021 7.2E-08 64.9 3.5 31 544-574 8-38 (227)
343 3t61_A Gluconokinase; PSI-biol 96.2 0.0029 9.8E-08 62.5 4.4 26 255-280 18-43 (202)
344 1ak2_A Adenylate kinase isoenz 96.2 0.0039 1.3E-07 63.2 5.4 26 255-280 16-41 (233)
345 2q6t_A DNAB replication FORK h 96.2 0.0083 2.9E-07 67.1 8.6 38 539-576 196-237 (444)
346 1ly1_A Polynucleotide kinase; 96.2 0.0023 7.8E-08 61.6 3.3 29 545-573 4-33 (181)
347 3dl0_A Adenylate kinase; phosp 96.2 0.003 1E-07 63.0 4.2 30 545-574 2-31 (216)
348 2zts_A Putative uncharacterize 96.2 0.005 1.7E-07 62.5 5.9 38 539-576 26-67 (251)
349 3tlx_A Adenylate kinase 2; str 96.2 0.0031 1.1E-07 64.5 4.3 27 254-280 28-54 (243)
350 1qf9_A UMP/CMP kinase, protein 96.2 0.0044 1.5E-07 60.2 5.2 26 255-280 6-31 (194)
351 2vli_A Antibiotic resistance p 96.2 0.0023 7.8E-08 61.9 3.1 29 544-572 6-34 (183)
352 2bwj_A Adenylate kinase 5; pho 96.2 0.0023 7.7E-08 62.8 3.1 31 544-574 13-43 (199)
353 1zak_A Adenylate kinase; ATP:A 96.1 0.0028 9.7E-08 63.6 3.9 27 254-280 4-30 (222)
354 2bbw_A Adenylate kinase 4, AK4 96.1 0.0032 1.1E-07 64.4 4.3 26 255-280 27-52 (246)
355 3t61_A Gluconokinase; PSI-biol 96.1 0.0034 1.2E-07 61.9 4.4 31 544-574 19-49 (202)
356 3uie_A Adenylyl-sulfate kinase 96.1 0.0032 1.1E-07 62.2 4.1 28 253-280 23-50 (200)
357 3c8u_A Fructokinase; YP_612366 96.1 0.0062 2.1E-07 60.5 6.2 28 253-280 20-47 (208)
358 3umf_A Adenylate kinase; rossm 96.1 0.0034 1.2E-07 63.0 4.2 39 541-581 27-65 (217)
359 3sr0_A Adenylate kinase; phosp 96.1 0.0031 1.1E-07 62.8 3.9 34 545-580 2-35 (206)
360 2pt5_A Shikimate kinase, SK; a 96.1 0.0032 1.1E-07 60.0 3.8 30 545-574 2-31 (168)
361 2q6t_A DNAB replication FORK h 96.1 0.024 8.4E-07 63.2 11.7 31 250-280 195-225 (444)
362 2pt5_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 60.1 3.7 24 257-280 2-25 (168)
363 2vli_A Antibiotic resistance p 96.1 0.0022 7.4E-08 62.0 2.7 26 255-280 5-30 (183)
364 1ak2_A Adenylate kinase isoenz 96.1 0.0035 1.2E-07 63.5 4.4 31 544-574 17-47 (233)
365 1ukz_A Uridylate kinase; trans 96.1 0.0033 1.1E-07 62.0 4.0 26 255-280 15-40 (203)
366 1nks_A Adenylate kinase; therm 96.1 0.0027 9.3E-08 61.7 3.3 25 257-281 3-27 (194)
367 1kht_A Adenylate kinase; phosp 96.1 0.0028 9.6E-08 61.6 3.4 25 544-568 4-28 (192)
368 3rlf_A Maltose/maltodextrin im 96.1 0.028 9.5E-07 61.1 11.5 30 251-280 25-54 (381)
369 3be4_A Adenylate kinase; malar 96.1 0.0033 1.1E-07 63.0 3.9 31 544-574 6-36 (217)
370 3be4_A Adenylate kinase; malar 96.1 0.0038 1.3E-07 62.5 4.4 25 256-280 6-30 (217)
371 3dl0_A Adenylate kinase; phosp 96.1 0.0027 9.4E-08 63.3 3.3 24 257-280 2-25 (216)
372 3fb4_A Adenylate kinase; psych 96.1 0.0032 1.1E-07 62.7 3.8 30 545-574 2-31 (216)
373 3fb4_A Adenylate kinase; psych 96.1 0.0031 1.1E-07 62.9 3.6 24 257-280 2-25 (216)
374 3tlx_A Adenylate kinase 2; str 96.0 0.0029 1E-07 64.7 3.4 33 542-574 28-60 (243)
375 1ukz_A Uridylate kinase; trans 96.0 0.0037 1.3E-07 61.6 4.1 32 544-575 16-47 (203)
376 2plr_A DTMP kinase, probable t 96.0 0.0038 1.3E-07 61.8 4.1 27 255-281 4-30 (213)
377 1vt4_I APAF-1 related killer D 96.0 0.026 9E-07 68.4 11.9 43 222-278 131-173 (1221)
378 2pez_A Bifunctional 3'-phospho 96.0 0.0054 1.8E-07 59.2 5.1 26 254-279 4-29 (179)
379 1qf9_A UMP/CMP kinase, protein 96.0 0.0041 1.4E-07 60.4 4.2 31 544-574 7-37 (194)
380 1knq_A Gluconate kinase; ALFA/ 96.0 0.0041 1.4E-07 59.7 4.0 30 544-573 9-38 (175)
381 1kgd_A CASK, peripheral plasma 96.0 0.0043 1.5E-07 60.2 4.1 27 254-280 4-30 (180)
382 4eun_A Thermoresistant glucoki 96.0 0.0044 1.5E-07 61.1 4.3 31 543-573 29-59 (200)
383 3bh0_A DNAB-like replicative h 96.0 0.02 6.8E-07 60.8 9.7 38 539-576 64-104 (315)
384 3e70_C DPA, signal recognition 96.0 0.031 1.1E-06 59.7 11.0 56 227-282 99-156 (328)
385 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0043 1.5E-07 66.5 4.4 71 253-330 169-250 (330)
386 3tui_C Methionine import ATP-b 95.9 0.027 9.1E-07 60.9 10.4 30 251-280 50-79 (366)
387 2j41_A Guanylate kinase; GMP, 95.9 0.0037 1.3E-07 61.7 3.4 28 252-279 3-30 (207)
388 3foz_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 65.4 4.0 37 544-580 11-47 (316)
389 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0025 8.6E-08 68.4 2.3 29 545-573 26-54 (359)
390 2qor_A Guanylate kinase; phosp 95.9 0.0045 1.6E-07 61.2 4.0 29 252-280 9-37 (204)
391 1zak_A Adenylate kinase; ATP:A 95.9 0.0037 1.3E-07 62.7 3.4 30 544-573 6-35 (222)
392 2a5y_B CED-4; apoptosis; HET: 95.9 0.036 1.2E-06 63.6 12.2 166 512-712 131-330 (549)
393 2v54_A DTMP kinase, thymidylat 95.9 0.0057 1.9E-07 60.2 4.5 34 543-576 4-38 (204)
394 1cke_A CK, MSSA, protein (cyti 95.9 0.0066 2.3E-07 60.9 5.1 25 256-280 6-30 (227)
395 2yhs_A FTSY, cell division pro 95.9 0.015 5.3E-07 65.0 8.4 31 251-281 289-319 (503)
396 3bgw_A DNAB-like replicative h 95.8 0.063 2.2E-06 59.8 13.4 41 251-294 193-233 (444)
397 2jaq_A Deoxyguanosine kinase; 95.8 0.0063 2.2E-07 59.7 4.7 24 257-280 2-25 (205)
398 2wwf_A Thymidilate kinase, put 95.8 0.0047 1.6E-07 61.2 3.7 29 254-282 9-37 (212)
399 1e4v_A Adenylate kinase; trans 95.8 0.0047 1.6E-07 61.6 3.6 30 545-574 2-31 (214)
400 1nn5_A Similar to deoxythymidy 95.8 0.0055 1.9E-07 60.8 4.0 29 254-282 8-36 (215)
401 2pez_A Bifunctional 3'-phospho 95.8 0.0062 2.1E-07 58.8 4.2 35 544-578 6-43 (179)
402 2fz4_A DNA repair protein RAD2 95.8 0.017 5.7E-07 58.8 7.6 24 257-280 110-133 (237)
403 2yvu_A Probable adenylyl-sulfa 95.8 0.0066 2.3E-07 59.0 4.5 29 253-281 11-39 (186)
404 3uie_A Adenylyl-sulfate kinase 95.8 0.012 4E-07 58.0 6.3 37 543-579 25-64 (200)
405 2pbr_A DTMP kinase, thymidylat 95.8 0.0061 2.1E-07 59.3 4.2 31 545-575 2-35 (195)
406 2jaq_A Deoxyguanosine kinase; 95.7 0.0053 1.8E-07 60.3 3.7 29 545-573 2-30 (205)
407 3tau_A Guanylate kinase, GMP k 95.7 0.005 1.7E-07 61.2 3.6 28 253-280 6-33 (208)
408 1htw_A HI0065; nucleotide-bind 95.7 0.0063 2.2E-07 57.8 4.1 30 251-280 29-58 (158)
409 2xb4_A Adenylate kinase; ATP-b 95.7 0.0056 1.9E-07 61.6 3.9 30 545-574 2-31 (223)
410 2xau_A PRE-mRNA-splicing facto 95.7 0.022 7.6E-07 68.1 9.7 60 506-565 72-131 (773)
411 1lvg_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 60.4 3.8 27 254-280 3-29 (198)
412 2z0h_A DTMP kinase, thymidylat 95.7 0.014 4.8E-07 56.9 6.7 24 257-280 2-25 (197)
413 2gxq_A Heat resistant RNA depe 95.7 0.023 8E-07 55.8 8.3 18 544-561 39-56 (207)
414 1e4v_A Adenylate kinase; trans 95.7 0.0063 2.2E-07 60.6 4.2 24 257-280 2-25 (214)
415 2pbr_A DTMP kinase, thymidylat 95.7 0.0082 2.8E-07 58.4 4.9 24 257-280 2-25 (195)
416 3b9q_A Chloroplast SRP recepto 95.7 0.011 3.9E-07 62.3 6.3 56 226-281 71-126 (302)
417 1cke_A CK, MSSA, protein (cyti 95.7 0.0067 2.3E-07 60.8 4.4 30 544-573 6-35 (227)
418 2xb4_A Adenylate kinase; ATP-b 95.7 0.0081 2.8E-07 60.4 5.0 24 257-280 2-25 (223)
419 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0059 2E-07 65.4 4.1 71 543-613 171-251 (330)
420 3tr0_A Guanylate kinase, GMP k 95.7 0.0065 2.2E-07 59.8 4.1 27 253-279 5-31 (205)
421 1q57_A DNA primase/helicase; d 95.7 0.057 2E-06 61.2 12.5 31 251-281 238-268 (503)
422 1w4r_A Thymidine kinase; type 95.7 0.022 7.7E-07 55.7 7.7 28 254-281 19-47 (195)
423 1w36_D RECD, exodeoxyribonucle 95.7 0.035 1.2E-06 64.6 10.8 26 255-280 164-189 (608)
424 3a8t_A Adenylate isopentenyltr 95.7 0.022 7.5E-07 60.7 8.2 26 255-280 40-65 (339)
425 2v9p_A Replication protein E1; 95.6 0.0072 2.5E-07 63.8 4.4 29 251-279 122-150 (305)
426 3nwj_A ATSK2; P loop, shikimat 95.6 0.0061 2.1E-07 62.6 3.8 26 255-280 48-73 (250)
427 2if2_A Dephospho-COA kinase; a 95.6 0.0054 1.8E-07 60.5 3.2 30 545-575 3-32 (204)
428 1nks_A Adenylate kinase; therm 95.6 0.004 1.4E-07 60.5 2.2 34 545-578 3-39 (194)
429 2j37_W Signal recognition part 95.6 0.037 1.3E-06 62.5 10.5 34 543-576 101-137 (504)
430 3r20_A Cytidylate kinase; stru 95.6 0.0096 3.3E-07 60.3 5.1 26 255-280 9-34 (233)
431 2v54_A DTMP kinase, thymidylat 95.6 0.007 2.4E-07 59.5 4.0 25 255-279 4-28 (204)
432 4gp7_A Metallophosphoesterase; 95.6 0.019 6.5E-07 55.0 7.0 20 543-562 9-28 (171)
433 2z0h_A DTMP kinase, thymidylat 95.6 0.0076 2.6E-07 58.8 4.2 31 546-576 3-36 (197)
434 1z6g_A Guanylate kinase; struc 95.6 0.0067 2.3E-07 60.8 3.7 29 251-279 19-47 (218)
435 2if2_A Dephospho-COA kinase; a 95.6 0.0063 2.2E-07 60.0 3.5 23 257-280 3-25 (204)
436 1m7g_A Adenylylsulfate kinase; 95.5 0.008 2.7E-07 59.8 4.2 28 253-280 23-50 (211)
437 2j37_W Signal recognition part 95.5 0.042 1.5E-06 62.0 10.4 54 227-282 75-128 (504)
438 3nwj_A ATSK2; P loop, shikimat 95.5 0.0085 2.9E-07 61.5 4.3 33 543-575 48-80 (250)
439 3a00_A Guanylate kinase, GMP k 95.4 0.0079 2.7E-07 58.6 3.6 25 256-280 2-26 (186)
440 1t6n_A Probable ATP-dependent 95.4 0.066 2.3E-06 53.1 10.6 58 506-565 14-73 (220)
441 2og2_A Putative signal recogni 95.4 0.017 5.7E-07 62.5 6.4 57 225-281 127-183 (359)
442 3r20_A Cytidylate kinase; stru 95.4 0.0096 3.3E-07 60.3 4.1 30 544-573 10-39 (233)
443 3llm_A ATP-dependent RNA helic 95.4 0.057 2E-06 54.5 10.0 22 543-564 76-97 (235)
444 3a8t_A Adenylate isopentenyltr 95.4 0.0075 2.6E-07 64.3 3.4 36 544-579 41-76 (339)
445 3b6e_A Interferon-induced heli 95.4 0.051 1.7E-06 53.5 9.4 23 544-566 49-71 (216)
446 1ex7_A Guanylate kinase; subst 95.4 0.0089 3.1E-07 58.4 3.7 25 256-280 2-26 (186)
447 1zu4_A FTSY; GTPase, signal re 95.4 0.055 1.9E-06 57.6 10.1 31 252-282 102-132 (320)
448 1odf_A YGR205W, hypothetical 3 95.4 0.019 6.6E-07 60.2 6.5 29 253-281 29-57 (290)
449 1znw_A Guanylate kinase, GMP k 95.3 0.0095 3.3E-07 59.1 3.9 29 252-280 17-45 (207)
450 1jjv_A Dephospho-COA kinase; P 95.3 0.0087 3E-07 59.1 3.6 28 545-573 4-31 (206)
451 3zvl_A Bifunctional polynucleo 95.3 0.015 5.2E-07 64.3 6.0 28 253-280 256-283 (416)
452 1w4r_A Thymidine kinase; type 95.3 0.019 6.6E-07 56.1 5.9 67 545-614 22-103 (195)
453 2grj_A Dephospho-COA kinase; T 95.3 0.0078 2.7E-07 59.1 3.1 31 545-575 14-44 (192)
454 3rlf_A Maltose/maltodextrin im 95.3 0.036 1.2E-06 60.2 8.5 25 543-567 29-53 (381)
455 2bdt_A BH3686; alpha-beta prot 95.3 0.0081 2.8E-07 58.5 3.1 24 256-279 3-26 (189)
456 2qt1_A Nicotinamide riboside k 95.3 0.0085 2.9E-07 59.3 3.3 28 252-279 18-45 (207)
457 3foz_A TRNA delta(2)-isopenten 95.3 0.015 5E-07 61.2 5.2 27 254-280 9-35 (316)
458 2xxa_A Signal recognition part 95.3 0.07 2.4E-06 59.2 11.0 64 227-295 74-138 (433)
459 4e22_A Cytidylate kinase; P-lo 95.3 0.015 5.1E-07 59.7 5.2 27 254-280 26-52 (252)
460 3asz_A Uridine kinase; cytidin 95.3 0.01 3.6E-07 58.7 3.9 28 253-280 4-31 (211)
461 1p9r_A General secretion pathw 95.3 0.026 8.8E-07 62.3 7.4 28 254-281 166-193 (418)
462 3thx_B DNA mismatch repair pro 95.2 0.069 2.4E-06 64.6 11.5 28 251-278 669-696 (918)
463 3ake_A Cytidylate kinase; CMP 95.2 0.011 3.7E-07 58.3 3.8 31 545-575 4-34 (208)
464 4g1u_C Hemin import ATP-bindin 95.2 0.02 6.7E-07 59.3 5.8 109 540-658 34-211 (266)
465 2plr_A DTMP kinase, probable t 95.2 0.013 4.5E-07 57.8 4.3 31 544-574 5-37 (213)
466 1cr0_A DNA primase/helicase; R 95.2 0.012 4E-07 61.9 4.1 31 250-280 30-60 (296)
467 1uj2_A Uridine-cytidine kinase 95.2 0.015 5E-07 59.6 4.8 46 254-299 21-68 (252)
468 2bbw_A Adenylate kinase 4, AK4 95.1 0.01 3.6E-07 60.4 3.6 30 543-572 27-56 (246)
469 3bgw_A DNAB-like replicative h 95.1 0.048 1.6E-06 60.8 9.2 39 539-577 193-234 (444)
470 4gp7_A Metallophosphoesterase; 95.1 0.0092 3.1E-07 57.3 2.9 23 252-274 6-28 (171)
471 1s96_A Guanylate kinase, GMP k 95.1 0.013 4.3E-07 59.0 4.0 30 251-280 12-41 (219)
472 2pl3_A Probable ATP-dependent 95.1 0.048 1.7E-06 54.8 8.4 18 544-561 63-80 (236)
473 2v3c_C SRP54, signal recogniti 95.1 0.033 1.1E-06 61.8 7.7 53 227-281 73-125 (432)
474 3ney_A 55 kDa erythrocyte memb 95.1 0.015 5E-07 57.4 4.2 27 254-280 18-44 (197)
475 3ake_A Cytidylate kinase; CMP 95.0 0.017 5.7E-07 56.9 4.6 24 257-280 4-27 (208)
476 3exa_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 61.7 4.0 35 545-579 5-39 (322)
477 2qor_A Guanylate kinase; phosp 95.0 0.014 4.6E-07 57.7 3.9 29 540-568 9-37 (204)
478 2grj_A Dephospho-COA kinase; T 95.0 0.013 4.5E-07 57.5 3.8 25 256-280 13-37 (192)
479 2wwf_A Thymidilate kinase, put 95.0 0.005 1.7E-07 61.0 0.7 27 543-569 10-36 (212)
480 3e70_C DPA, signal recognition 95.0 0.11 3.8E-06 55.4 11.2 26 542-567 128-153 (328)
481 1qde_A EIF4A, translation init 95.0 0.061 2.1E-06 53.5 8.8 17 544-560 52-68 (224)
482 1jjv_A Dephospho-COA kinase; P 95.0 0.012 4E-07 58.1 3.3 23 257-280 4-26 (206)
483 1uf9_A TT1252 protein; P-loop, 95.0 0.015 5E-07 57.0 4.0 31 544-575 9-39 (203)
484 3llm_A ATP-dependent RNA helic 95.0 0.11 3.7E-06 52.4 10.6 22 255-276 76-97 (235)
485 1j8m_F SRP54, signal recogniti 95.0 0.074 2.5E-06 55.9 9.6 54 227-282 72-125 (297)
486 1vht_A Dephospho-COA kinase; s 95.0 0.017 5.7E-07 57.6 4.4 30 544-574 5-34 (218)
487 4e22_A Cytidylate kinase; P-lo 94.9 0.019 6.4E-07 58.9 4.8 30 544-573 28-57 (252)
488 2jeo_A Uridine-cytidine kinase 94.9 0.016 5.4E-07 59.2 4.2 29 252-280 22-50 (245)
489 1hv8_A Putative ATP-dependent 94.9 0.045 1.5E-06 58.6 8.1 34 544-577 45-83 (367)
490 2oap_1 GSPE-2, type II secreti 94.9 0.017 5.9E-07 65.5 4.9 70 543-612 260-343 (511)
491 2v3c_C SRP54, signal recogniti 94.9 0.034 1.1E-06 61.7 7.1 34 543-576 99-135 (432)
492 4a1f_A DNAB helicase, replicat 94.9 0.018 6.1E-07 61.7 4.6 111 539-652 42-203 (338)
493 1uf9_A TT1252 protein; P-loop, 94.9 0.015 5.3E-07 56.9 3.9 25 255-280 8-32 (203)
494 1rz3_A Hypothetical protein rb 94.9 0.028 9.5E-07 55.4 5.7 28 253-280 20-47 (201)
495 1q3t_A Cytidylate kinase; nucl 94.9 0.024 8.1E-07 57.4 5.3 28 253-280 14-41 (236)
496 1ls1_A Signal recognition part 94.9 0.12 4.2E-06 54.1 11.0 29 254-282 97-125 (295)
497 1uj2_A Uridine-cytidine kinase 94.9 0.019 6.4E-07 58.8 4.6 37 544-580 23-67 (252)
498 2yvu_A Probable adenylyl-sulfa 94.9 0.021 7.2E-07 55.3 4.7 35 543-577 13-50 (186)
499 1q0u_A Bstdead; DEAD protein, 94.8 0.029 9.9E-07 55.9 5.8 19 544-562 42-60 (219)
500 1ltq_A Polynucleotide kinase; 94.8 0.019 6.5E-07 60.3 4.6 24 256-279 3-26 (301)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.8e-85 Score=772.14 Aligned_cols=545 Identities=34% Similarity=0.542 Sum_probs=428.6
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|++|+|++.+++.|.+.+...+. .++.|..+|+.+|++||||||||||||++|+++|++++ .+++.++|
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~--~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~~ 271 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHH--CCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEEH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHcc--CHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CeEEEEEh
Confidence 56799999999999999998866555 67899999999999999999999999999999999999 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+++...+.+.....++.+|..|....|+||||||||.+++.+....+. ....+...|+..||++.... +
T Consensus 272 ~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~----~~~riv~~LL~~mdg~~~~~-------~ 340 (806)
T 3cf2_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE----VERRIVSQLLTLMDGLKQRA-------H 340 (806)
T ss_dssp HHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCT----THHHHHHHHHTHHHHCCGGG-------C
T ss_pred HHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCCh----HHHHHHHHHHHHHhcccccC-------C
Confidence 999999999999999999999999999999999999999766543322 23467888999999876543 4
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
|+||++||+++.+|++|+|||||+++|+++.|+..+|.+||+.+++...+. .+..+..++..++||+++||..+|++|+
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~ 419 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765543 3334889999999999999999999999
Q ss_pred HHHhcccccCCC------cccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhcc
Q 003743 455 HAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 528 (799)
Q Consensus 455 ~~a~~r~~~~~~------~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~ 528 (799)
+.|++|...... ..+......++.+||..|+..+.|+..++..... +...|++++|++++++.|.+.+.+|
T Consensus 420 ~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~---p~v~w~diggl~~~k~~l~e~v~~p 496 (806)
T 3cf2_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV---PQVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBC---CCCCSTTCCSCHHHHHHHTTTTTTT
T ss_pred HHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccC---CCCCHHHhCCHHHHHHHHHHHHHhh
Confidence 999887542111 1111123567889999999999999888765443 4589999999999999999999999
Q ss_pred CCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEE
Q 003743 529 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 529 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfi 608 (799)
+++++.|...+..+++++|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++++|..|+..+||||||
T Consensus 497 ~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iifi 576 (806)
T 3cf2_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp TTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEEC
T ss_pred hhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCC---CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHH
Q 003743 609 DEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 685 (799)
Q Consensus 609 DEid~l~~~r~~---~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~I 685 (799)
||||+++++|+. +..+..+|++++||++||++....+|+||+|||+|+.||+|++|||||+++|+||+|+.++|.+|
T Consensus 577 DEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~i 656 (806)
T 3cf2_A 577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI 656 (806)
T ss_dssp SCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHT
T ss_pred hhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHH
Confidence 999999999864 34557789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC--------------CCCCCCCcccHHHH
Q 003743 686 LKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--------------NEPGKMPVITDALL 751 (799)
Q Consensus 686 l~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~--------------~~~~~~~~it~e~l 751 (799)
|+.++++.++..++|++.||+.++||||+||.++|++|++.|+++.+..... ......+.|+.+||
T Consensus 657 l~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df 736 (806)
T 3cf2_A 657 LKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736 (806)
T ss_dssp TTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CC
T ss_pred HHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHH
Confidence 9999999999999999999999999999999999999999999987653211 11223457999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCC
Q 003743 752 KSIASKARPSVSEAEKLRLYSIYGQFLDSKK 782 (799)
Q Consensus 752 ~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 782 (799)
.+|++.++||++++++++|++|..+|.++|.
T Consensus 737 ~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~ 767 (806)
T 3cf2_A 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRG 767 (806)
T ss_dssp TTTC---------------CCCC--------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999885
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.1e-62 Score=593.60 Aligned_cols=545 Identities=34% Similarity=0.535 Sum_probs=432.4
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..|++|+|.+.+++.+.+.+...+. .+.+|..++++++.++||+||||||||++|+++|+.++ .+++.+++
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~--~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~------~~~i~v~~ 271 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHH--CGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT------CEEEEEEH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CcEEEEEc
Confidence 56799999999999999999977665 67889999999999999999999999999999999988 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
.++.....+.....+..+|..+....|+++||||+|.+++.+... .......+...|+.++++.... ..
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~-------~~ 340 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQR-------AH 340 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTT-------SC
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc----cchHHHHHHHHHHHHhhhhccc-------cc
Confidence 999888888888999999999988899999999999998654322 1233346777788888876543 25
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+++|++||+++.+|+++++++||+..+.++.|+.++|.+|++.++....+. .+..+..++..+.|++++++..++..+.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~ 419 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887765443 3334788999999999999999999998
Q ss_pred HHHhcccccCCCc------ccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhcc
Q 003743 455 HAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 528 (799)
Q Consensus 455 ~~a~~r~~~~~~~------~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~ 528 (799)
..++.+....... ........++.+||..++....|...+... ...+...|++++|++++++.|.+.+.++
T Consensus 420 ~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~---~~~~~v~~~di~gl~~vk~~l~~~v~~~ 496 (806)
T 1ypw_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV---VEVPQVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCC---CCCCCCSSCSSSCCCCHHHHHHTTTTSS
T ss_pred HHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhc---ccCccccccccccchhhhhhHHHHHHhh
Confidence 8887664321110 001122446677888777776666554432 2334578999999999999999999999
Q ss_pred CCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEE
Q 003743 529 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 529 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfi 608 (799)
..++..+...++.++.++||+||||||||++|+++|..++.+++.++++++.++|+|+++..++.+|+.++...||||||
T Consensus 497 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCC
T ss_pred hhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCC---CchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHH
Q 003743 609 DEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 685 (799)
Q Consensus 609 DEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~I 685 (799)
||||++++.++... .....+++++|+.+|+++....+++||+|||+|+.+|++++|||||++.|+|++|+.++|.+|
T Consensus 577 DEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~I 656 (806)
T 1ypw_A 577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI 656 (806)
T ss_dssp SSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHH
T ss_pred EChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHH
Confidence 99999998876543 235689999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC--------------CCCCCCCcccHHHH
Q 003743 686 LKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--------------NEPGKMPVITDALL 751 (799)
Q Consensus 686 l~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~--------------~~~~~~~~it~e~l 751 (799)
|+.+++..++..+++++.|+..++||||+||.++|+.|+..|+++.+..... ......+.|+.+||
T Consensus 657 l~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 736 (806)
T 1ypw_A 657 LKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736 (806)
T ss_dssp TTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSS
T ss_pred HHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHH
Confidence 9999999888889999999999999999999999999999999875432100 01122357999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCC
Q 003743 752 KSIASKARPSVSEAEKLRLYSIYGQFLDSKK 782 (799)
Q Consensus 752 ~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 782 (799)
.+|++.++|+++++++++|++|..+|..+++
T Consensus 737 ~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~ 767 (806)
T 1ypw_A 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRG 767 (806)
T ss_dssp CCCCCC-------------------------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999988875
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-48 Score=425.73 Aligned_cols=248 Identities=38% Similarity=0.598 Sum_probs=233.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.|.++|++|+|++++++.|++.+.+|+.+|++|...|+++++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCC---chhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|+++..++.+|..|+..+||||||||+|+++++|..+.. ....+++++||.+||++....+|+||+|||+|+.|
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 999999999999999999999999999999999998865443 23467899999999999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||++||||||+.|+||+|+.++|.+||+.++++.++..++|++.||..++||||+||.++|++|++.|+++.
T Consensus 301 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~------- 373 (405)
T 4b4t_J 301 DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER------- 373 (405)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred CCCCCCcccHHHHHHHHhhcCC
Q 003743 739 EPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~ 760 (799)
...||.+||..|+.++.+
T Consensus 374 ----~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 374 ----RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp ----CSBCCHHHHHHHHHHHHH
T ss_pred ----CCCcCHHHHHHHHHHHhC
Confidence 346999999999987644
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-48 Score=422.42 Aligned_cols=251 Identities=33% Similarity=0.564 Sum_probs=234.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+.++|++|+|++++++.|++.+.+|+.+|++|...|.++++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|+++..++.+|..|+..+||||||||+|+++++|.... .....+++++||.+||++...++|+||+|||+|+.|
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 99999999999999999999999999999999999986543 234568899999999999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||++||||||+.|+|++|+.++|.+||+.++++.++..++|++.||..++||||+||+++|++|++.|+++.
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~------- 407 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER------- 407 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCC
Q 003743 739 EPGKMPVITDALLKSIASKARPSVS 763 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~ 763 (799)
...||.+||..|+.++.++..
T Consensus 408 ----~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 408 ----RMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp ----CSCBCHHHHHHHHHHHHHHHC
T ss_pred ----CCccCHHHHHHHHHHHhCCCC
Confidence 246999999999988766443
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-46 Score=417.66 Aligned_cols=255 Identities=36% Similarity=0.601 Sum_probs=235.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+.+.|++|+|++++++.|.+.+.+|+.+|++|...|+++++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|+++..++.+|..|+...||||||||+|+++++|.... .....+++++||.+||++...++|+||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999999885543 234567899999999999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||++||||||+.|+||+|+.++|.+||+.++++.+...++|++.||..++||||+||+++|++|++.|+++.
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~------- 406 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD------- 406 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCCHHHH
Q 003743 739 EPGKMPVITDALLKSIASKARPSVSEAEK 767 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~~~~~ 767 (799)
...|+.+||..|+.++.++...+..
T Consensus 407 ----~~~i~~~d~~~Al~~v~~~~k~e~~ 431 (437)
T 4b4t_L 407 ----RDHINPDDLMKAVRKVAEVKKLEGT 431 (437)
T ss_dssp ----CSSBCHHHHHHHHHHHHHTCC----
T ss_pred ----CCCCCHHHHHHHHHHHHhccCcccc
Confidence 2469999999999988776554433
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-46 Score=415.85 Aligned_cols=251 Identities=35% Similarity=0.548 Sum_probs=235.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+..+|++|+|++++++.|.+.+.+|+.+|+.|...|.++++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|++++.++.+|..|+..+||||||||+|+++++|.....+ ...+++++||.+||++...++|+||+|||+|+.|
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999999988654332 3457889999999999999999999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||++||||||+.|+||+|+.++|.+||+.++++.++..++|++.||..++||||+||+++|++|++.|+++.
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~------- 406 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG------- 406 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-------
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCC
Q 003743 739 EPGKMPVITDALLKSIASKARPSVS 763 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~ 763 (799)
...|+.+||..|+..++|+.+
T Consensus 407 ----~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 407 ----QSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp ----CSSBCHHHHHHHHHSCSSSCC
T ss_pred ----CCCcCHHHHHHHHHHHhCCCC
Confidence 246999999999999998754
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-46 Score=411.80 Aligned_cols=249 Identities=33% Similarity=0.565 Sum_probs=233.2
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 501 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 501 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.+.+.++|++|+|++++++.|++.+.+|+.+|+.|...|+++++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCc
Q 003743 581 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 657 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ 657 (799)
++|+|++++.++.+|..|+..+||||||||+|.++++|..+..+ ...++++++|.+||+.....+|+||+|||+|+.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 99999999999999999999999999999999999988655433 345678899999999999999999999999999
Q ss_pred cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC
Q 003743 658 LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS 737 (799)
Q Consensus 658 ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 737 (799)
||||++|||||++.|+|++|+.++|.+||+.+++..++..++|++.||..++||||+||+++|++|++.|+++.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~------ 434 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------ 434 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT------
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred CCCCCCCcccHHHHHHHHhhcCC
Q 003743 738 NEPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 738 ~~~~~~~~it~e~l~~a~~~~~~ 760 (799)
...||.+||..|+.++.+
T Consensus 435 -----~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 435 -----RKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp -----CSSBCHHHHHHHHHHHHH
T ss_pred -----CCccCHHHHHHHHHHHhc
Confidence 246999999999987643
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-45 Score=405.22 Aligned_cols=251 Identities=38% Similarity=0.578 Sum_probs=233.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
+.+.+.|++++|++++++.|.+.+.+|+.+|+.|...|.++++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
+|+|+++..++.+|..|+..+||||||||+|++++.|.... .....+++++||++||++....+|+||+|||+|+.|
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999885432 345678999999999999999999999999999999
Q ss_pred ChhhcCCCCcceeeecC-CCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC
Q 003743 659 DAALLRPGRLDRLLFCD-FPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS 737 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~-~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 737 (799)
|||++||||||+.|+|| +|+.++|..||+.++++.++..++|++.||..++||||+||.++|++|++.|+++.
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~------ 398 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------ 398 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC------
Confidence 99999999999999997 89999999999999999999999999999999999999999999999999998762
Q ss_pred CCCCCCCcccHHHHHHHHhh-cCCCCC
Q 003743 738 NEPGKMPVITDALLKSIASK-ARPSVS 763 (799)
Q Consensus 738 ~~~~~~~~it~e~l~~a~~~-~~~~~~ 763 (799)
...|+.+||.+|+.. ++++.+
T Consensus 399 -----~~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 399 -----RYVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp -----CSSBCHHHHHHHHHHHSCSCCC
T ss_pred -----CCCCCHHHHHHHHHHhhCccCC
Confidence 246999999999976 455544
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-40 Score=392.10 Aligned_cols=259 Identities=40% Similarity=0.648 Sum_probs=241.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+.+.|++|+|++++++.|++.+.+|+.+|++|...+..+++++|||||||||||++|+++|++++.+++.++++++.++|
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhc
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 663 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~ 663 (799)
+|+++..++.+|+.|+..+||||||||||.++++|+........+++++|+.+|+++....+|+||+|||+|+.||++++
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALr 358 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHh
Confidence 99999999999999999999999999999999999887778889999999999999998899999999999999999999
Q ss_pred CCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCC--
Q 003743 664 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG-- 741 (799)
Q Consensus 664 r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~-- 741 (799)
|||||++.|+|++|+.++|.+||+.+++..++..++|+..||..++||+|+||.++|++|++.|+++...........
T Consensus 359 R~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~ 438 (806)
T 3cf2_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (806)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCS
T ss_pred CCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876544322111
Q ss_pred ----CCCcccHHHHHHHHhhcCCCC
Q 003743 742 ----KMPVITDALLKSIASKARPSV 762 (799)
Q Consensus 742 ----~~~~it~e~l~~a~~~~~~~~ 762 (799)
....|+.+||..|+..++|+.
T Consensus 439 ~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 439 AEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred hhhhccceeeHHHHHHHHHhCCCcc
Confidence 234689999999999888754
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.7e-39 Score=347.01 Aligned_cols=274 Identities=29% Similarity=0.557 Sum_probs=246.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-CCeEEEEeccchhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNK 582 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-~~~~i~i~~~~l~~~ 582 (799)
+...|++++|++++++.|.+.+.+|+.++++|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.++
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4578999999999999999999999999999874 34667899999999999999999999999 899999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-ccCcEEEEEecCCCCccChh
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-~~~~vlvi~ttn~~~~ld~a 661 (799)
|.|.++..++.+|..++...|+||||||+|.+.+.++........+++++|+..|+++. ...+++||+|||.|+.+|++
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~a 165 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 165 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHH
Confidence 99999999999999999999999999999999998877767778899999999999886 36789999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC---
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--- 737 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~--- 737 (799)
++| ||+..+++++|+.++|.+||+.+++..+.. .+.+++.|+..++||+|+||.++|+.|++.|+++.......
T Consensus 166 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~ 243 (322)
T 1xwi_A 166 IRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKV 243 (322)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEE
T ss_pred HHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999 999999999999999999999999887654 67889999999999999999999999999999987642100
Q ss_pred -----------------------------------CCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC
Q 003743 738 -----------------------------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 738 -----------------------------------~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~ 780 (799)
.+....+.||.+||..|++.++|+++.+++.+|++|..+|..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 244 RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp EEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCSC
T ss_pred ccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccC
Confidence 0001125799999999999999999999999999999999754
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.5e-38 Score=342.16 Aligned_cols=275 Identities=44% Similarity=0.759 Sum_probs=247.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++++++.|.+.+.+++.+++.|...+..++.++||+||||||||++|+++|..++.+++.++++++.+.|
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCC---CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~---~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
+|.++..++.+|..++...|+||||||+|.+.+.++. ...+...+++++|+..|+++....+++||+|||+++.+|+
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCG
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccCh
Confidence 9999999999999999999999999999999876543 2234567899999999998887788999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC--
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN-- 738 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~-- 738 (799)
+++|+|||+..++|++|+.++|.+|++.+++..++..+++++.++..++||+|+||+++|+.|+..|+++.+......
T Consensus 170 al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~ 249 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER 249 (301)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999988888889999999999999999999999999999998875321100
Q ss_pred ------------CCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh
Q 003743 739 ------------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFL 778 (799)
Q Consensus 739 ------------~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~ 778 (799)
.....+.|+.+||..|++.++|+++.+++.+|..|..+|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 250 ERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp ----------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred hcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 0112357999999999999999999999999999998883
No 12
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=347.05 Aligned_cols=250 Identities=22% Similarity=0.344 Sum_probs=218.9
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...+|++|+|++.+++.|.+.+...+. .++.|..+|+++|+++|||||||||||++|+++|++++ .+++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~--~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~ 214 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVK--HPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVS 214 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEE
Confidence 357899999999999999998876565 78999999999999999999999999999999999999 8999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++...+.|+....++.+|..|....||||||||+|.+++.|....+.+ ......++..|++.||++....
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~~~------- 286 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG-DSEVQRTMLELLNQLDGFETSK------- 286 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG-GGHHHHHHHHHHHHHHTTTCCC-------
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCC-cHHHHHHHHHHHHhhhccCCCC-------
Confidence 99999999999999999999999999999999999999997765543332 3344567788889999876543
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+|+||+|||+++.|||||+|||||+.+|+|+.|+.++|.+||+.++++..+. .+..++.+++.++||+|+||..+|++|
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA 365 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEA 365 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999998876543 223489999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
++.|+++ ....++.+||..|+.++.+.
T Consensus 366 ~~~Air~-----------~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 366 GMYALRE-----------RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHT-----------TCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHc-----------CCCCcCHHHHHHHHHHHhCc
Confidence 9998865 23568899999999876553
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=335.25 Aligned_cols=264 Identities=44% Similarity=0.767 Sum_probs=218.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++++++.|.+.+.+|+.+++.+...++..+.+++|+||||||||++++++|..++..++.+++.++.+.|
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhc
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 663 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~ 663 (799)
.|+++..++.+|+.++...|+|+|+||+|.+.+.++........+++++++.+|++......++++++||+|+.+|++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 99999999999999988999999999999998766543334456889999999999988889999999999999999999
Q ss_pred CCCCcceeeecCCCCHHHHHHHHHHHHcc---CCCCCcccHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 664 RPGRLDRLLFCDFPSPRERLDILKVISRK---LPLADDVDLEAIAHMT--EGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 664 r~gRf~~~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~~~~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|||||++.|+|++|+.++|.+||+.+++. .++..+++++.++..+ +||||+||.++|++|++.|+++........
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~ 244 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSG 244 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999998854 3456789999999875 599999999999999999998865433222
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCCHHHH
Q 003743 739 EPGKMPVITDALLKSIASKARPSVSEAEK 767 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~~~~~ 767 (799)
.......|+.+||..|+..++|++++++.
T Consensus 245 ~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 245 NEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -----CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 22334579999999999999999987753
No 14
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-38 Score=344.43 Aligned_cols=251 Identities=20% Similarity=0.290 Sum_probs=219.8
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
...+|++|+|++++++.|.+.+...+. .+++|..+|+++|++||||||||||||++|+++|++++ .+++.++
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~--~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~ 248 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLT--HPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIV 248 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHH--CCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC------CCEEEEE
Confidence 467899999999999999999987776 78999999999999999999999999999999999999 8999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++...+.|+....++.+|..|....||||||||+|.+++.|......+ .......+..|++.+|++....
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-~~~~~~~l~~LL~~lDg~~~~~------- 320 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG-EREIQRTMLELLNQLDGFDDRG------- 320 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSS-CCHHHHHHHHHHHHHHHCCCSS-------
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCc-cHHHHHHHHHHHHHhhCcCCCC-------
Confidence 99999999999999999999999999999999999999998775544333 3334466778888888866543
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+|+||+|||+++.|||||+|||||+.+|+|+.|+.++|.+||+.++....+. .+..++.++..++||+++||.++|++|
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999998876543 222489999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 492 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~ 492 (799)
+..|+++ ....++.+||..|+.++.+..
T Consensus 400 ~~~Air~-----------~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 400 GLLALRE-----------RRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHT-----------TCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-----------CCCccCHHHHHHHHHHHhCCC
Confidence 9999865 235688999999998876643
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.7e-38 Score=339.62 Aligned_cols=275 Identities=30% Similarity=0.550 Sum_probs=242.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
.+...|++++|++++++.|.+.+.+|+.+++.+.. +..++.++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 45688999999999999999999999999988876 44667899999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-ccCcEEEEEecCCCCccChh
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-~~~~vlvi~ttn~~~~ld~a 661 (799)
|.|.++..++.+|..++...|+||||||||.+.++++........+++++++..|+++. ...+++||+|||.|+.+|++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~a 170 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 170 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999999998876666778899999999999885 56689999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC---
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--- 737 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~--- 737 (799)
++| ||+..++|++|+.++|.+||+.+++..+.. .+.+++.|+..++||+|+||.++|+.|++.|+++.......
T Consensus 171 l~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 171 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999 999999999999999999999999887654 67889999999999999999999999999999987653110
Q ss_pred -----------------------------CCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC
Q 003743 738 -----------------------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 738 -----------------------------~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~ 780 (799)
.+....+.||.+||..|++.++|+++.++..+|.+|..+|...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 0011235799999999999999999999999999999999764
No 16
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=345.30 Aligned_cols=252 Identities=20% Similarity=0.302 Sum_probs=220.0
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+.+|++|+|++.+++.|.+.+...+. .+++|..+|+++|++||||||||||||++|+++|++++ .+++.++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~--~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~ 247 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMK--RADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN------ATFLKLA 247 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHH--CSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEe
Confidence 466899999999999999999887776 78999999999999999999999999999999999999 8999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++...+.|.....++.+|..|....||||||||+|.+++.|.+....+ ......++..|++.+|++.+..
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~-~~~~~~~~~~lL~~ldg~~~~~------- 319 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG-DREVQRTMLELLNQLDGFSSDD------- 319 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT-THHHHHHHHHHHHHHTTSCSSC-------
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC-chHHHHHHHHHHHHhhccCCCC-------
Confidence 99999999999999999999999999999999999999997765543322 2334466778888888876543
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+|+||+|||+++.|||||+|||||+.+|+|+.|+.++|.+||+.++++..+. .+..++.+++.++||+|+||.++|++|
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA 398 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEA 398 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998876543 222388999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccccccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 493 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~ 493 (799)
+..|+++ ....++.+||..|+..+.|...
T Consensus 399 ~~~a~r~-----------~~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 399 GMIALRN-----------GQSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHHHH-----------TCSSBCHHHHHHHHHSCSSSCC
T ss_pred HHHHHHc-----------CCCCcCHHHHHHHHHHHhCCCC
Confidence 9998865 2256889999999998877543
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.5e-37 Score=338.98 Aligned_cols=275 Identities=30% Similarity=0.550 Sum_probs=235.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
.+...|++++|++++++.|.+.+.+++.+++.|.. +..++.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34578999999999999999999999999998876 45677899999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc-cCcEEEEEecCCCCccChh
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~-~~~vlvi~ttn~~~~ld~a 661 (799)
|.|.++..++.+|..++...|+||||||+|.+.+.++........+++++|+..|+++.. ..+++||+|||.|+.+|++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999999888766667788999999999998754 5679999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC---
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--- 737 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~--- 737 (799)
++| ||+..+++++|+.++|.+||+.+++..+.. .+.+++.|+..++||+|+||.++|+.|++.|+++.......
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 999999999999999999999999887653 67889999999999999999999999999999986532100
Q ss_pred -----------------------------CCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC
Q 003743 738 -----------------------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 738 -----------------------------~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~ 780 (799)
.+....+.|+.+||..|+..++|+++.+++.+|++|..+|...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC--
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 0001235799999999999999999999999999999999754
No 18
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-37 Score=340.36 Aligned_cols=250 Identities=19% Similarity=0.283 Sum_probs=218.7
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+.+|++|+|++.+++.|.+.+...+. .+..|..+|+++|++||||||||||||++|+++|++++ .+++.++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~--~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~ 247 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLK--NPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSP 247 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEe
Confidence 366799999999999999999977666 78999999999999999999999999999999999999 8999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++...+.|.....++.+|..|....||||||||+|.+++.|..... ........++..|+..||++....
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~-~~~~~~~~~l~~lL~~lDg~~~~~------- 319 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT-SADREIQRTLMELLTQMDGFDNLG------- 319 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCC-SSTTHHHHHHHHHHHHHHSSSCTT-------
T ss_pred hhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCC-CcchHHHHHHHHHHHHhhcccCCC-------
Confidence 999999999999999999999999999999999999999977654333 233344567788889999876543
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+++||+|||+++.|||||+|||||+.+|+|+.|+.++|.+||+.++...... ++..++.++..++||+|+||.++|++|
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998876543 233489999999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
+..|+++. ...++.+||..|+..+.|.
T Consensus 399 ~~~air~~-----------~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 399 GFFAIRDD-----------RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHTT-----------CSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-----------CCCCCHHHHHHHHHHHHhc
Confidence 99988652 2458899999999877654
No 19
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=337.28 Aligned_cols=247 Identities=20% Similarity=0.298 Sum_probs=216.9
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+.+|++|+|++.+++.|.+.+...+. .+.+|..+|+++|+++|||||||||||++|+++|++++ .+++.++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~--~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~ 238 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLV--QADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVN 238 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEe
Confidence 356899999999999999999987776 78999999999999999999999999999999999999 8999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++...+.|.....++.+|..|....||||||||+|.+++.|....... ......++..|++.||++....
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ldg~~~~~------- 310 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFDQST------- 310 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHHHSCSSC-------
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCC-ChHHHHHHHHHHHHhhCCCCCC-------
Confidence 99999999999999999999999999999999999999998765543332 3334577888999999976543
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEecc-CCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLP-APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~-~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
+|+||+|||+++.|||||+|||||+.+|+|| .|+..+|..||+.++.+..+. ++..++.++..++||+|+||..+|++
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQE 389 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHH
Confidence 4999999999999999999999999999996 799999999999998876543 23348999999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
|++.|+++. ...++.+||..|+...
T Consensus 390 A~~~a~r~~-----------~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 390 AGLRAVRKN-----------RYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHHHHTT-----------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHCC-----------CCCCCHHHHHHHHHHh
Confidence 999998762 2468899999988654
No 20
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-37 Score=337.50 Aligned_cols=248 Identities=21% Similarity=0.263 Sum_probs=215.8
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
..+|++|+|++.+++.|.+.+...+. .+++|..+|+++|++||||||||||||++|+++|++++ .+++.+++
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~--~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~ 276 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLL--SPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIG 276 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhc--CHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEh
Confidence 56899999999999999998877665 78999999999999999999999999999999999999 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+++...+.|.....++.+|..|....||||||||+|.+++.|.+... +........+..++..||+.... .+
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~-~~~~~~~~~l~~lL~~lDg~~~~-------~~ 348 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA-GGDNEVQRTMLELITQLDGFDPR-------GN 348 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSC-GGGGHHHHHHHHHHHHHHSSCCT-------TT
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCC-CccHHHHHHHHHHHHHhhccCCC-------Cc
Confidence 99999999999999999999999999999999999999977655433 22334446667777888876543 35
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
|+||+|||+++.||+||+|||||+.+|+|+.|+.++|.+||+.+++...+.- +..++.+++.|+||+|+||..+|++|+
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dvdl~~LA~~T~GfSGADI~~l~~eAa 427 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GIRWELISRLCPNSTGAELRSVCTEAG 427 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988765432 223889999999999999999999999
Q ss_pred HHHhcccccCCCcccccccccceecccchhcccccc
Q 003743 455 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 490 (799)
Q Consensus 455 ~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p 490 (799)
+.|+++. ...++.+||..|+.++.+
T Consensus 428 ~~Air~~-----------~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 428 MFAIRAR-----------RKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHT-----------CSSBCHHHHHHHHHHHHH
T ss_pred HHHHHcC-----------CCccCHHHHHHHHHHHhc
Confidence 9988652 245889999999887654
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.1e-36 Score=342.27 Aligned_cols=275 Identities=28% Similarity=0.544 Sum_probs=235.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-CCeEEEEeccchhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLN 581 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-~~~~i~i~~~~l~~ 581 (799)
.+...|++++|++++++.|.+.+.+|+.++++|.. +..+++++||+||||||||++|+++|.++ +.+|+.++++++.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 35678999999999999999999999999888764 24566899999999999999999999999 89999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-ccCcEEEEEecCCCCccCh
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-~~~~vlvi~ttn~~~~ld~ 660 (799)
.|.|.++..++.+|..++...|+||||||||.+.+.+.........+++++|+..|+++. ...+++||+|||.|+.+|+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~ 286 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCH
Confidence 999999999999999999999999999999999988877667778899999999999876 3578999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccC---
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNID--- 736 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~--- 736 (799)
+++| ||+..+++++|+.++|..||+.++...+.. .+.+++.|+..++||+|+||.++|+.|++.|+++......
T Consensus 287 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~ 364 (444)
T 2zan_A 287 AIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 364 (444)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred HHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999 999999999999999999999999877653 6788999999999999999999999999999998764310
Q ss_pred ---------------------C--------------CCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC
Q 003743 737 ---------------------S--------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 737 ---------------------~--------------~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~ 780 (799)
. .+....+.||.+||..|+..++||++.+++.+|.+|..+|...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~ 443 (444)
T 2zan_A 365 VRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443 (444)
T ss_dssp ECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred hccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 0 0001235799999999999999999999999999999888653
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=5.8e-34 Score=344.41 Aligned_cols=453 Identities=15% Similarity=0.207 Sum_probs=305.0
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc----eeeEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHI 289 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~----~~~~~ 289 (799)
.+..++.++|.+..++.+++.+ . ...+.++||+||||||||++|+++|+.+..... ....+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l----~-----------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVL----C-----------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH----T-----------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred hcCCCCCccCCHHHHHHHHHHH----h-----------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 3567889999998887776643 2 124567999999999999999999998853211 12456
Q ss_pred EEEeccccc--ccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC
Q 003743 290 VFVCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 367 (799)
Q Consensus 290 ~~v~~s~l~--~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~ 367 (799)
+.+++..+. ..+.+.+...++.++..+....++||||||+|.+.+.+....+ . ....+.|...++
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~---~---~~~~~~L~~~l~------- 312 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---Q---VDAANLIKPLLS------- 312 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC---H---HHHHHHHSSCSS-------
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc---h---HHHHHHHHHHHh-------
Confidence 667766655 2345677888889998887777899999999999854322111 1 122333332221
Q ss_pred CccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHHhhc
Q 003743 368 SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKC 438 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----~~~~~~~~~l~~la~~~ 438 (799)
.+.+.+|++||.++ .+|++|.+ ||. .+.|+.|+.+++.+|++.++.. ..+.++++.+..++..+
T Consensus 313 ----~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s 385 (758)
T 1r6b_X 313 ----SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA 385 (758)
T ss_dssp ----SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred ----CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 12478888888643 46899999 998 7999999999999999987654 56778899988888776
Q ss_pred CC-----CChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccccccccccccccc----ccCCCCCCCC
Q 003743 439 DG-----YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKT----SAEGGRSGWD 509 (799)
Q Consensus 439 ~g-----~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~----~~~~~~~~~~ 509 (799)
.+ +.+..+..++++|+..+... +. ......++.+|+..++.............. .......-..
T Consensus 386 ~~~i~~~~lp~~~i~lld~a~~~~~~~--~~-----~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~ 458 (758)
T 1r6b_X 386 VKYINDRHLPDKAIDVIDEAGARARLM--PV-----SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKM 458 (758)
T ss_dssp HHHCTTSCTTHHHHHHHHHHHHHHHHS--SS-----CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTT
T ss_pred hhhcccccCchHHHHHHHHHHHHHhcc--cc-----cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHh
Confidence 55 34556777888776443211 11 012245677777776655421110000000 0000001124
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCC----CCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh---
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPL----RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--- 582 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~--- 582 (799)
.+.|++++++.+...+... ..|+ ++..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 5788888888877765421 1222 344579999999999999999999999999999999987543
Q ss_pred ---------hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc---------cC
Q 003743 583 ---------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LT 644 (799)
Q Consensus 583 ---------~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~---------~~ 644 (799)
|+|..+. ..+....+...++||||||||++ ...+++.|++.|+.-.- ..
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 4443222 12333444556789999999987 35688899988874221 24
Q ss_pred cEEEEEecCCCC-------------------------ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC------
Q 003743 645 GVFVFAATSRPD-------------------------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL------ 693 (799)
Q Consensus 645 ~vlvi~ttn~~~-------------------------~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~------ 693 (799)
+++||+|||.+. .++|+|++ ||+.+|.|++|+.+++..|++.++...
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 675 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ 675 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999854 57889998 999999999999999999998877532
Q ss_pred -CCC---CcccHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHH
Q 003743 694 -PLA---DDVDLEAIAHMT--EGFSGADLQALLSDAQLSAVHEI 731 (799)
Q Consensus 694 -~~~---~~~~~~~la~~~--~g~sg~di~~~~~~a~~~a~~~~ 731 (799)
.+. .+..++.|+... .++..++++.+++.+...++.+.
T Consensus 676 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 676 KGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp TTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 111 222345555543 24667899999888887655443
No 23
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=4.2e-33 Score=336.46 Aligned_cols=448 Identities=15% Similarity=0.209 Sum_probs=283.1
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAH 288 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~ 288 (799)
..+..++.++|.+..++.+++.+.. +.+.++||+||||||||++|+++|+.+.... .....
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~---------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~ 238 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR---------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC---------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC---------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe
Confidence 3455688999999888877765421 2356799999999999999999999984221 11245
Q ss_pred EEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCC
Q 003743 289 IVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 368 (799)
Q Consensus 289 ~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~ 368 (799)
++.+++ ...+.|.+...++.+|..+....++||||| .. . ...+.|+..++
T Consensus 239 ~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--~------------~~~~~L~~~l~-------- 288 (758)
T 3pxi_A 239 VMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--I------------DASNILKPSLA-------- 288 (758)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT--------
T ss_pred EEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--h------------hHHHHHHHHHh--------
Confidence 666666 333456677788899999888889999999 10 0 12233333332
Q ss_pred ccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHHhhcC
Q 003743 369 SCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCD 439 (799)
Q Consensus 369 ~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----~~~~~~~~~l~~la~~~~ 439 (799)
.+.+.+|++||..+ .+|++++| ||. .|.|+.|+.+++.+|++.++.. .++.++++++..++..+.
T Consensus 289 ---~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~ 362 (758)
T 3pxi_A 289 ---RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSD 362 (758)
T ss_dssp ---SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred ---cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 12489999999987 68999999 995 7999999999999999977665 567789999888887654
Q ss_pred -----CCChhhHHHHHHHHHHHHhcccccCCCccc---------------------------------------------
Q 003743 440 -----GYDAYDLEILVDRTVHAAVGRYLHSDSSFE--------------------------------------------- 469 (799)
Q Consensus 440 -----g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~--------------------------------------------- 469 (799)
++.+.....+++.|+..+.-+.........
T Consensus 363 ~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 442 (758)
T 3pxi_A 363 RYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS 442 (758)
T ss_dssp HSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred cccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777766443221110000000
Q ss_pred -----ccccccceecccchhccccccccccccccc----ccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCC
Q 003743 470 -----KHIKPTLVRDDFSQAMHEFLPVAMRDITKT----SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL 540 (799)
Q Consensus 470 -----~~~~~~l~~edf~~al~~~~p~~~~~~~~~----~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~ 540 (799)
......++.+++...+.............. .......-...++|++.+++.+...+...... ...+.
T Consensus 443 ~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~----~~~~~ 518 (758)
T 3pxi_A 443 WKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAG----LKDPK 518 (758)
T ss_dssp GGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTT----CSCTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcc----cCCCC
Confidence 001122233333322222211000000000 00000011246789999998888877642110 00112
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 541 RLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 541 ~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
++..++||+||||||||++|+++|+.+ +.+|+.++++++...+... ...++...+...++||||||||.+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~--- 591 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA--- 591 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCcccc---
Confidence 333479999999999999999999987 7899999999988766554 122333344556789999999988
Q ss_pred CCCCCCchhhHHHHHHHhhccCcc---------ccCcEEEEEecCCCCc------------cChhhcCCCCcceeeecCC
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL------------LDAALLRPGRLDRLLFCDF 676 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~---------~~~~vlvi~ttn~~~~------------ld~al~r~gRf~~~i~~~~ 676 (799)
...+++.|++.|+.-. ...+++||+|||.+.. +.|++++ ||+.+|.|++
T Consensus 592 --------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~ 661 (758)
T 3pxi_A 592 --------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHS 661 (758)
T ss_dssp --------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC-
T ss_pred --------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCC
Confidence 4568888888887532 2345788999997654 7888888 9999999999
Q ss_pred CCHHHHHHHHHHHHccC-------CCCCccc---HHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHh
Q 003743 677 PSPRERLDILKVISRKL-------PLADDVD---LEAIAHM--TEGFSGADLQALLSDAQLSAVHEIL 732 (799)
Q Consensus 677 p~~~~r~~Il~~~~~~~-------~~~~~~~---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~~~ 732 (799)
|+.+++.+|++.++..+ ...-.++ .+.|+.. ...+..++++++++.+...++.+.+
T Consensus 662 l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 662 LEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999998776543 2222333 4444432 2345678899988888777765544
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-33 Score=299.89 Aligned_cols=274 Identities=31% Similarity=0.521 Sum_probs=228.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|.+.+++.+.+.+..+..+++.+...+ .++.++||+||||||||++|+++|..++.+++.++++++.+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 457899999999999999999998888888876544 4567999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcccc---CcEEEEEecCCCCccCh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL---TGVFVFAATSRPDLLDA 660 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~---~~vlvi~ttn~~~~ld~ 660 (799)
.|..+..++.+|..+....|+||||||+|.+...+.........++.+.|+..+++.... .+++||++||.|+.+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~ 174 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence 999999999999999999999999999999998876555556678889999999876543 57999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC-
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN- 738 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~- 738 (799)
+++| ||+..+++++|+.++|..|++.+++..+.. .+.+++.++..+.||+|+||..+|+.|+..|+++........
T Consensus 175 ~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~ 252 (297)
T 3b9p_A 175 AALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCL 252 (297)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------
T ss_pred HHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999 999999999999999999999998876543 456788999999999999999999999999987653221111
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC
Q 003743 739 EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~ 780 (799)
.......|+.+||..|+..++|+++.++...|++|...|.+.
T Consensus 253 ~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 253 DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp -CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 122345799999999999999999999999999999888654
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.3e-33 Score=297.15 Aligned_cols=266 Identities=39% Similarity=0.654 Sum_probs=223.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
.+...|++++|++++++.|.+.+..++.+++.+...+..++.++||+||||||||++|+++|+.++.+++.++++++.+.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc---hhhHHHHHHHhhccCccccCcEEEEEecCCCCccC
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 659 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~---~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld 659 (799)
+.|..+..+..+|..+....|+||||||+|.+.+++.....+ ...+.+..++..+++.....+++||+|||.++.+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 999999999999999999999999999999998877654332 23456677777777777777899999999999999
Q ss_pred hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 003743 660 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 739 (799)
Q Consensus 660 ~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 739 (799)
++++|++||+..++|++|+.++|.+|++.+++...+..+.++..++..+.|++++||+.+|+.|...|+.+.
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~-------- 242 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL-------- 242 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999998888888899999999999999999999999998887652
Q ss_pred CCCCCcccHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhhc
Q 003743 740 PGKMPVITDALLKSIASKARP--SVSEAEKLRLYSIYGQFLD 779 (799)
Q Consensus 740 ~~~~~~it~e~l~~a~~~~~~--~~~~~~~~~~~~~~~~f~~ 779 (799)
...|+.+|+..|+..+.+ ...-..-.++..||+.|..
T Consensus 243 ---~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 243 ---RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp ---CSSBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred ---cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 246999999999987642 2233445568888888764
No 26
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.1e-33 Score=319.61 Aligned_cols=258 Identities=40% Similarity=0.650 Sum_probs=236.4
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
...|++++|++..++.|.+.+..++.+++.|...+..++.++||+||||||||++|+++|+.++.+|+.++|+++.+.|.
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcC
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR 664 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r 664 (799)
|.++..++.+|..|....|+||||||||.+.++++........++++.|+..|++......++||+|||+++.+|++++|
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r 359 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGS
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhC
Confidence 99999999999999999999999999999999887777777889999999999988888899999999999999999999
Q ss_pred CCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCC---
Q 003743 665 PGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG--- 741 (799)
Q Consensus 665 ~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~--- 741 (799)
+|||+..++|++|+.++|.+||+.+++..++..++++..++..+.||+++||..+|+.|+..|+++...........
T Consensus 360 ~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~ 439 (489)
T 3hu3_A 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDA 439 (489)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCH
T ss_pred CCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccch
Confidence 99999999999999999999999999999888889999999999999999999999999999998865543322111
Q ss_pred ---CCCcccHHHHHHHHhhcCCCC
Q 003743 742 ---KMPVITDALLKSIASKARPSV 762 (799)
Q Consensus 742 ---~~~~it~e~l~~a~~~~~~~~ 762 (799)
....||.+||..|++.++|+.
T Consensus 440 ~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 440 EVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp HHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred hhcccCcCCHHHHHHHHHhCCchh
Confidence 123689999999999888754
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=307.54 Aligned_cols=274 Identities=28% Similarity=0.474 Sum_probs=232.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++.+++.|.+.+.+++.+++.+...+ .++.++||+||||||||++|+++|..++.+++.++++++.+.|
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 457899999999999999999998888888776543 5567899999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc--cCcEEEEEecCCCCccChh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LTGVFVFAATSRPDLLDAA 661 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~--~~~vlvi~ttn~~~~ld~a 661 (799)
.|..+..++.+|..+....|+||||||||.+.+.+.........+++++|+..|++... ..+++||+|||.++.+|++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 99999999999999999999999999999999887666666778899999999987653 4679999999999999999
Q ss_pred hcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 003743 662 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS-NE 739 (799)
Q Consensus 662 l~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~-~~ 739 (799)
++| ||+..+++++|+.++|.+|++.+++..+.. .+.+++.|+..+.||+|+||..+|+.|+..++++....... ..
T Consensus 238 l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~ 315 (357)
T 3d8b_A 238 ARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATIT 315 (357)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 999 999999999999999999999998776543 45678999999999999999999999999998865322111 11
Q ss_pred CCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC
Q 003743 740 PGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780 (799)
Q Consensus 740 ~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~ 780 (799)
......|+.+||..|+..++|+++.++++.|.+|...|..+
T Consensus 316 ~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 316 PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp ---CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 23346899999999999999999999999999999998653
No 28
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=7.1e-33 Score=312.56 Aligned_cols=245 Identities=38% Similarity=0.669 Sum_probs=218.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++++++.+.+.+.. +..+..+...+...++++||+||||||||++|+++|.+++.+|+.++++++...|
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 346899999999999999998775 5677888888988899999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC---CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~---~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
.|.+...++.+|..|+...||||||||+|.+.++++.. ......+++++|+.+|+++....+++||++||+|+.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999999877542 223445789999999998877788999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 740 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 740 (799)
+++|||||++.+.|++|+.++|.+|++.+++..++..++++..++..+.||+|+||.++|+.|+..|.++
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~---------- 239 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE---------- 239 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc----------
Confidence 9999999999999999999999999999999988888899999999999999999999999999888643
Q ss_pred CCCCcccHHHHHHHHhhcCC
Q 003743 741 GKMPVITDALLKSIASKARP 760 (799)
Q Consensus 741 ~~~~~it~e~l~~a~~~~~~ 760 (799)
+...|+.+||..|+..+.+
T Consensus 240 -~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 240 -GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -TCSSBCHHHHHHHHHHHC-
T ss_pred -CCCeecHHHHHHHHHHHhc
Confidence 2347999999999987654
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=302.42 Aligned_cols=274 Identities=32% Similarity=0.504 Sum_probs=225.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
.+...|++++|++.+++.|.+.+..+..+++.+...+ .++.++||+||||||||++|+++|..++.+|+.++++++.+.
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 3457899999999999999999998888888776655 446799999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc--cCcEEEEEecCCCCccCh
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~--~~~vlvi~ttn~~~~ld~ 660 (799)
|.|.++..++.+|..++...|+||||||||.++..+.........++++.|+..|++... ..+++||+|||.++.+|+
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 267 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCH
Confidence 999999999999999999999999999999999887766666788999999999987764 467999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC-
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN- 738 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~- 738 (799)
+++| ||+..++|++|+.++|.+||+.++...+.. .+.+++.|+..++||++++|..+|+.|+..++++........
T Consensus 268 ~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~ 345 (389)
T 3vfd_A 268 AVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNM 345 (389)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CC
T ss_pred HHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999 999999999999999999999998876543 455788999999999999999999999999988754322211
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc
Q 003743 739 EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 779 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~ 779 (799)
.......|+.+||..++..++|+++.+.++.|++|...|..
T Consensus 346 ~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 346 SASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp SSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred chhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 12234579999999999999999999999999999998865
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=7.8e-32 Score=283.13 Aligned_cols=245 Identities=37% Similarity=0.639 Sum_probs=214.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++.+++.+.+.+.. +.+++.+...+...+.+++|+||||||||++|+++|+.++.+++.++++++...+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 457899999999999999987765 5667777777778888999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
.|..+..++.+|+.+....|+++||||+|.+.+.++... .....+.++.++..|++.....+++||+|||.++.+|+
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~ 165 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCH
Confidence 999999999999999998999999999999988765432 22334788999999998887788999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 740 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 740 (799)
+++|++||++.++|++|+.++|.+|++.+++..++..+.+...++..+.||+++||.++|+.|+..|..+.
T Consensus 166 ~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--------- 236 (257)
T 1lv7_A 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 236 (257)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---------
T ss_pred HHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999998888888899999999999999999999999998886542
Q ss_pred CCCCcccHHHHHHHHhhcCC
Q 003743 741 GKMPVITDALLKSIASKARP 760 (799)
Q Consensus 741 ~~~~~it~e~l~~a~~~~~~ 760 (799)
...|+.+|+..|+..+..
T Consensus 237 --~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 --KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp --CSSBCHHHHHHHHHHHTT
T ss_pred --CCcccHHHHHHHHHHHhc
Confidence 247999999999987653
No 31
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.97 E-value=3.6e-31 Score=323.02 Aligned_cols=465 Identities=16% Similarity=0.236 Sum_probs=280.0
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHI 289 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~ 289 (799)
.+..++.++|.+..+..+++.+.. ..++++||+||||||||++++++|+.+.... .....+
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~---------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC---------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc---------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 356788999999877777664421 2345799999999999999999999984211 012678
Q ss_pred EEEeccccc--ccchhhHHHHHHHHHHHHHhc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 290 VFVCCSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 290 ~~v~~s~l~--~~~~~~~~~~l~~~~~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
+.++++.+. ..+.+.+...+..++..+... .++||||||+|.+.+.+... +. ....+.|...++.
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-g~------~~~~~~L~~~l~~----- 297 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GA------VDAGNMLKPALAR----- 297 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHHT-----
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-ch------HHHHHHHHHHHhC-----
Confidence 889988875 344567777888888888754 67899999999997543221 11 1233444444432
Q ss_pred CCccCCCCEEEEEecCCCC----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhh----hcccCCCHHHHHHHHhhc
Q 003743 367 KSSCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKC 438 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~----~~~~~~~~~~l~~la~~~ 438 (799)
+.+.+|++||.++ .++++|.+ ||. .|.|++|+.+++.+|++.++. .+++.++++++..++..+
T Consensus 298 ------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 298 ------GELRLIGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp ------TCCCEEEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred ------CCeEEEEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 1367888888764 36899999 998 599999999999999987665 346778899988888876
Q ss_pred CC-----CChhhHHHHHHHHHHHHhcccc--c---------------------CCCc-----------------------
Q 003743 439 DG-----YDAYDLEILVDRTVHAAVGRYL--H---------------------SDSS----------------------- 467 (799)
Q Consensus 439 ~g-----~s~~dl~~lv~~A~~~a~~r~~--~---------------------~~~~----------------------- 467 (799)
.+ +.+.....++++|+..+..+.. + ....
T Consensus 369 ~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (854)
T 1qvr_A 369 HRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAK 448 (854)
T ss_dssp HHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHH
T ss_pred hhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 44 4455555666655533221100 0 0000
Q ss_pred ----cc------------------------------------------------------------ccccccceecccch
Q 003743 468 ----FE------------------------------------------------------------KHIKPTLVRDDFSQ 483 (799)
Q Consensus 468 ----~~------------------------------------------------------------~~~~~~l~~edf~~ 483 (799)
+. .....++..+++..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~ 528 (854)
T 1qvr_A 449 LRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAE 528 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHH
Confidence 00 00001111122211
Q ss_pred hcccccccccccccc----cccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHH
Q 003743 484 AMHEFLPVAMRDITK----TSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHI 559 (799)
Q Consensus 484 al~~~~p~~~~~~~~----~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 559 (799)
.+............. .........+..++|.+.+.+.+...+...... ...+-++..++||+||||||||++
T Consensus 529 ~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g----~~~~~~p~~~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 529 IVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTEL 604 (854)
T ss_dssp HHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGG----CSCSSSCSEEEEEBSCSSSSHHHH
T ss_pred HHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcc----cCCCCCCceEEEEECCCCCCHHHH
Confidence 111111000000000 000000011345778888888877766531100 000112335899999999999999
Q ss_pred HHHHHHhC---CCeEEEEeccchhhh------------hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCc
Q 003743 560 VGAAAAAC---SLRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG 624 (799)
Q Consensus 560 a~alA~~~---~~~~i~i~~~~l~~~------------~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~ 624 (799)
|++++..+ +.+|+.++|+++... |+|..+ ...+....+...++||||||+|.+
T Consensus 605 A~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l---------- 672 (854)
T 1qvr_A 605 AKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA---------- 672 (854)
T ss_dssp HHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS----------
T ss_pred HHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc----------
Confidence 99999988 789999999876542 223322 122333344455689999999987
Q ss_pred hhhHHHHHHHhhccCcc---------ccCcEEEEEecCCC--------------------------CccChhhcCCCCcc
Q 003743 625 VTDRVVNQFLTELDGVE---------VLTGVFVFAATSRP--------------------------DLLDAALLRPGRLD 669 (799)
Q Consensus 625 ~~~r~~~~ll~~ld~~~---------~~~~vlvi~ttn~~--------------------------~~ld~al~r~gRf~ 669 (799)
...+++.|++.|+.-. ...+++||+|||.+ ..+.|+|+. ||+
T Consensus 673 -~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~ 749 (854)
T 1qvr_A 673 -HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLD 749 (854)
T ss_dssp -CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCS
T ss_pred -CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcC
Confidence 4568889999987432 12468899999973 225677776 999
Q ss_pred eeeecCCCCHHHHHHHHHHHHccC-------CCC---CcccHHHHHHHCC--CCcHHHHHHHHHHHHHHHHHHHhc
Q 003743 670 RLLFCDFPSPRERLDILKVISRKL-------PLA---DDVDLEAIAHMTE--GFSGADLQALLSDAQLSAVHEILN 733 (799)
Q Consensus 670 ~~i~~~~p~~~~r~~Il~~~~~~~-------~~~---~~~~~~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~ 733 (799)
.++.|++|+.+++..|++.++... .+. .+-.++.|+.... .+..++++++++.+...++.+.+.
T Consensus 750 ~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 750 EIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp BCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776532 111 2223555666544 567899999999988877766543
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=279.05 Aligned_cols=244 Identities=33% Similarity=0.593 Sum_probs=194.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
...|++++|++++++.+.+.+.. +.+++.+...+...+.++||+||||||||++|+++|+.++.+++.++++++.+.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 36799999999999999998775 66777788888888899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCC----CchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN----TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~----~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
|.++..++.+|..+....|+||||||+|.+..++.... .......++.++..+++.....+++||+|||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 99999999999999998999999999999987764322 22345678889988988777778999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCccc--HHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVD--LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~--~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
+++|+|||+..++|++|+.++|.+|++.+++..++..+.+ ...++..+.|++|+||.++|+.|+..|+++.
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------- 233 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------- 233 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------------
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999998877664433 4789999999999999999999988776542
Q ss_pred CCCCCCcccHHHHHHHHhhcCC
Q 003743 739 EPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~ 760 (799)
...|+.+|+..|+..+.+
T Consensus 234 ----~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 234 ----HTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -------CCBCCHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHhcc
Confidence 246888899988877644
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=5.3e-31 Score=298.98 Aligned_cols=245 Identities=40% Similarity=0.678 Sum_probs=218.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|+++++..+.+.+.. +..+..+...+...+.++||+||||||||++|+++|..++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 457899999999999999998764 5667778888888888999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC---CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~---~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
.|.....++.+|+.++...|+|+||||||.+...++.. ......+.+++++.+|++......++++++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99988999999999988889999999999998776532 223345788999999999888888999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 740 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 740 (799)
+++|||||++.++|++|+.++|.+||+.+++..++..++++..++..+.||+|+||.++|++|+..|.++
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~---------- 254 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---------- 254 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT----------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999998888888999999999999999999999999998877432
Q ss_pred CCCCcccHHHHHHHHhhcCC
Q 003743 741 GKMPVITDALLKSIASKARP 760 (799)
Q Consensus 741 ~~~~~it~e~l~~a~~~~~~ 760 (799)
....|+.+||.+|+..+.+
T Consensus 255 -~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 255 -GRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp -CCSSCCSHHHHHHHHHHTT
T ss_pred -CCCccCHHHHHHHHHHHhc
Confidence 2347999999999987654
No 34
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=4.2e-30 Score=269.42 Aligned_cols=242 Identities=41% Similarity=0.693 Sum_probs=210.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
..+...|++++|+++++..+.+.... ...+..+...++..+.+++|+||||||||+++++++..++.+++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34557899999999999999887764 45667788888888889999999999999999999999999999999999988
Q ss_pred hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC---CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 582 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 582 ~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~---~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
.+.+.....+..+|+.+....|+++||||+|.+...+... ......+.+++++..|++......++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 8888888889999999988889999999999998765431 2233457788999999988877889999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|++++|++||++.+++++|+.++|.+||+.+++..++..++++..++..+.|++|+||.++|+.|+..|.++
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~-------- 239 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE-------- 239 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT--------
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------
Confidence 999999999999999999999999999999998888888899999999999999999999999998887653
Q ss_pred CCCCCCcccHHHHHHHH
Q 003743 739 EPGKMPVITDALLKSIA 755 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~ 755 (799)
....||.+|+++|+
T Consensus 240 ---~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 ---GRRKITMKDLEEAA 253 (254)
T ss_dssp ---TCSSBCHHHHHHHT
T ss_pred ---cCCCcCHHHHHHHh
Confidence 12469999999876
No 35
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=267.17 Aligned_cols=260 Identities=22% Similarity=0.298 Sum_probs=197.2
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|++|+|++.+++.+.+.+...+. .+..+...++..+++++|+||||||||+|++++|+.++ ..++.+++
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~--~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~------~~~i~i~g 77 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVR--NPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG------LNFISVKG 77 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHH--SHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEEET
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhh--CHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC------CCEEEEEc
Confidence 45789999999999999888765555 66788999999999999999999999999999999988 67888999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
.++...+.+.....+..+|..+....|+++|+||+|.++..+..... .....+.+.++..|++..... .
T Consensus 78 ~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~~-------~ 146 (274)
T 2x8a_A 78 PELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEARQ-------Q 146 (274)
T ss_dssp TTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTT-------C
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc----hHHHHHHHHHHHhhhcccccC-------C
Confidence 88877777777888999999987788999999999998754432111 111244566677777654332 4
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhc-ccCCC-HHHHHHHHhh--cCCCChhhHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR-SLECS-DEILLDVASK--CDGYDAYDLEILV 450 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~-~~~~~-~~~l~~la~~--~~g~s~~dl~~lv 450 (799)
++++++||.++.+|++++|||||+..|+++.|+.++|.+||+.+++.. ...+. +..++.++.. |+||+++||..+|
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 899999999999999999999999999999999999999999988653 22222 3347888886 5699999999999
Q ss_pred HHHHHHHhcccccCCCcccccccccceecccchhccccccccc
Q 003743 451 DRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 493 (799)
Q Consensus 451 ~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~ 493 (799)
++|+..|+++...............++.+||..|+..+.|+..
T Consensus 227 ~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 227 REASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 9999999887653322222223457899999999999888654
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=3.7e-31 Score=279.63 Aligned_cols=251 Identities=33% Similarity=0.598 Sum_probs=212.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|.+.+++.+.+.+.. +.+++.+...+...+.++||+||||||||++|+++|..++.+++.++++++...+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 457899999999999999998774 6788888888888888999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC----CCchhhHHHHHHHhhccCccc-cCcEEEEEecCCCCcc
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD----NTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLL 658 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~----~~~~~~r~~~~ll~~ld~~~~-~~~vlvi~ttn~~~~l 658 (799)
.|.+...++.+|+.+....|+||||||+|.+...+..+ ......++++.|+..+++... ...++||+|||.++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 99888888899999999899999999999998765321 112234567788888887653 3458999999999999
Q ss_pred ChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 659 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 659 d~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
|++++|+|||+..++|++|+.++|.+||+.+++..++..+++++.++..+.|++|+||+++|+.|+..|..
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~--------- 235 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR--------- 235 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS---------
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999988888888899999999999999999999988776532
Q ss_pred CCCCCCcccHHHHHHHHhhcCCCCCHHH
Q 003743 739 EPGKMPVITDALLKSIASKARPSVSEAE 766 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~~~~~~~~~~~~ 766 (799)
.+...|+.+|+..++..+.|+...+.
T Consensus 236 --~~~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 236 --NNQKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp --SCCCSCCHHHHHTSCTTCCCCCC---
T ss_pred --hccCCcCHHHHHHHHHHHhhcchhhh
Confidence 12347999999999999888765443
No 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=268.61 Aligned_cols=227 Identities=20% Similarity=0.296 Sum_probs=192.8
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-ccCCceeeEEEEEe
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL-EHHKDLVAHIVFVC 293 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l-~~~~~~~~~~~~v~ 293 (799)
...|++|+|++.+++.+.+.+...+. .+..|.. +..+++++|||||||||||++|+++|+++ + .+++.++
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~--~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~------~~~~~i~ 78 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIK--FPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSIS 78 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHH--CGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTS------CEEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHh--CHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCC------CcEEEEE
Confidence 46799999999999999988865554 4555553 35667999999999999999999999998 5 6888999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++...+.+.....++.+|..+....|+||||||+|.+.+.+... .......+...++..+++..... .
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~------~ 148 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDN------D 148 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCC------T
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccC------C
Confidence 9998888777788889999999988899999999999998655432 12233466777788888754221 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
.++||++||.++.+|++++| ||+..++++.|+.++|.+|++.++......+++..++.+++.+.||+++||..+|++|
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 59999999999999999999 9999999999999999999999998888888899999999999999999999999999
Q ss_pred HHHHhcccc
Q 003743 454 VHAAVGRYL 462 (799)
Q Consensus 454 ~~~a~~r~~ 462 (799)
+..++++..
T Consensus 227 ~~~a~r~~~ 235 (322)
T 1xwi_A 227 LMQPVRKVQ 235 (322)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 38
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=1.4e-29 Score=288.01 Aligned_cols=279 Identities=23% Similarity=0.338 Sum_probs=219.9
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..|++++|.+.+++.+.+.+...+. .+.+|..+|.++++++|||||||||||++|+++|+.++ .+++.++|
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~--~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~------~~fv~vn~ 271 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS------SEEEEEEH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC------CCEEEEEc
Confidence 34678999999999999998876665 67889999999999999999999999999999999987 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+.+.....+.....+..+|..+....|++|||||||.+.+.+.... ......+...|+..+++.... .+
T Consensus 272 ~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~----~~~~~~~~~~LL~~ld~~~~~-------~~ 340 (489)
T 3hu3_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVSQLLTLMDGLKQR-------AH 340 (489)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC----CHHHHHHHHHHHHHHHHSCTT-------SC
T ss_pred hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc----chHHHHHHHHHHHHhhccccC-------Cc
Confidence 9998888888888899999999989999999999999997554322 223346778888888875432 25
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
++||+|||.++.++++++++|||+..++++.|+.++|.+|++.++....+. .+..+..++..+.||+++||..+|++|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~ 419 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776554 2334788999999999999999999999
Q ss_pred HHHhcccccCCCc------ccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHH
Q 003743 455 HAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTD 516 (799)
Q Consensus 455 ~~a~~r~~~~~~~------~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~ 516 (799)
..++++....-.. ........++.+||..++..+.|+..++..... +.+.|+|++|...
T Consensus 420 ~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~---p~v~W~dig~~~~ 484 (489)
T 3hu3_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV---PQVTWEDIGGRSH 484 (489)
T ss_dssp HHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC------------------
T ss_pred HHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccC---CCCCHHHcCCCcc
Confidence 9998876431110 001122468899999999999999888765544 4599999999653
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=8.3e-29 Score=268.86 Aligned_cols=229 Identities=17% Similarity=0.280 Sum_probs=193.4
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 292 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v 292 (799)
..+..|++++|.+.+++.+.+.+...+. .+.++.. +..+++++|||||||||||++|+++|+.++ .+++.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~--~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~v 82 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVK--FPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSV 82 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHH--CGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHT------CEEEEE
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHh--CHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHC------CCEEEE
Confidence 3456799999999999999988865554 4455554 456678999999999999999999999998 889999
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 293 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 293 ~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
+|+.+...+.+.....++.+|..+....|+||||||+|.+.+.+.... ......+...++..+++.....
T Consensus 83 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~------ 152 (322)
T 3eie_A 83 SSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE----SEASRRIKTELLVQMNGVGNDS------ 152 (322)
T ss_dssp EHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSC------
T ss_pred chHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc----chHHHHHHHHHHHHhccccccC------
Confidence 999998888889999999999999989999999999999986543321 1122356677788888764322
Q ss_pred CCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 373 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 373 ~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
..++||+|||.++.+|++++| ||+..++++.|+.++|.+|++.++......+++..++.++..++||+++||..+|+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 259999999999999999999 999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHhcccc
Q 003743 453 TVHAAVGRYL 462 (799)
Q Consensus 453 A~~~a~~r~~ 462 (799)
|...++++..
T Consensus 231 a~~~a~r~~~ 240 (322)
T 3eie_A 231 ALMQPIRKIQ 240 (322)
T ss_dssp HTTHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887754
No 40
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=1.2e-28 Score=261.97 Aligned_cols=240 Identities=41% Similarity=0.693 Sum_probs=208.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|.+++++.+.+.... ...+..+...++..+.+++|+||||||||+++++++..++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 457899999999999999887764 4556778888888888899999999999999999999999999999999988888
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCC---CCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~---~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~ 660 (799)
.+.....+..+|+.+....|+++|+||+|.+...+... ......+.++.++..|++......++++++||.|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 88888889999999988889999999999987665421 122345778889999998887778999999999999999
Q ss_pred hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 003743 661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 740 (799)
Q Consensus 661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 740 (799)
+++|++||++.++|++|+.++|.+||+.+++...+..++++..++..+.|++|+||+++|+.|+..|..+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~---------- 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---------- 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999998888888899999999999999999999999998877643
Q ss_pred CCCCcccHHHHHHHH
Q 003743 741 GKMPVITDALLKSIA 755 (799)
Q Consensus 741 ~~~~~it~e~l~~a~ 755 (799)
....||.+|+++|+
T Consensus 264 -~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 -GRRKITMKDLEEAA 277 (278)
T ss_dssp -TCCSBCHHHHHHHT
T ss_pred -CCCCcCHHHHHHHh
Confidence 12469999999886
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=2.7e-28 Score=268.14 Aligned_cols=228 Identities=17% Similarity=0.276 Sum_probs=187.5
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+..|++|+|++.+++.+.+.+...+. .+..|.. +..+++++|||||||||||++|+++|+.++ .+++.++
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~--~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~v~ 116 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVK--FPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSVS 116 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHH--CGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHh--CHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEee
Confidence 456799999999999999888765544 4555655 556778999999999999999999999998 8899999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++.....+.....++.+|..+....|+||||||+|.+.+.+... .......+...|+..+++..... .
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~------~ 186 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDS------Q 186 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---------C
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccC------C
Confidence 9998877777778888999999988899999999999998654332 22233466777888888764322 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
.++||++||.++.++++++| ||+..++++.|+.++|.+|++.++......+++..++.|+..+.||+++||..+|++|
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 59999999999999999999 9999999999999999999999999888778899999999999999999999999999
Q ss_pred HHHHhcccc
Q 003743 454 VHAAVGRYL 462 (799)
Q Consensus 454 ~~~a~~r~~ 462 (799)
+..|+++..
T Consensus 265 ~~~a~~~~~ 273 (355)
T 2qp9_X 265 LMQPIRKIQ 273 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987743
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=6.3e-29 Score=267.19 Aligned_cols=260 Identities=21% Similarity=0.308 Sum_probs=203.8
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...|++|+|++.+++.+.+.+...+. .+..|..+++++++++|||||||||||++|+++|+.++ .+++.++|
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~--~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~------~~~i~v~~ 82 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVE--HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKG 82 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CEEEEECH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhh--CHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC------CCEEEEEh
Confidence 56789999999999999998876665 67788899999999999999999999999999999998 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+.+.....+.....+..+|..+....|+||||||+|.+.+.+....+.... ....+...|+..+++.... .+
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~-~~~~~~~~lL~~l~~~~~~-------~~ 154 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG-AADRVINQILTEMDGMSTK-------KN 154 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSC-SCCHHHHHHHHHHHSSCTT-------SS
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcch-HHHHHHHHHHHHhhcccCC-------CC
Confidence 887655555555667888999888889999999999998654332111111 1114566677777765432 25
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
++||+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++....+. .+..++.++..++||+++||.++|++|+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~ 233 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 233 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876543 2333778889999999999999999999
Q ss_pred HHHhcccccCCCc-----------cc---ccccccceecccchhccccccc
Q 003743 455 HAAVGRYLHSDSS-----------FE---KHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 455 ~~a~~r~~~~~~~-----------~~---~~~~~~l~~edf~~al~~~~p~ 491 (799)
..|+.+.+..... .. ......++.+||..|+....|+
T Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 234 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 9888765421000 00 0112467888888888877664
No 43
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=249.32 Aligned_cols=250 Identities=23% Similarity=0.289 Sum_probs=183.5
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..|++++|.+.+++.+.+.+..+. .+..|..+|.+.++++|||||||||||++|+++|+.++ .+++.++|
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~~~~ 72 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLK---SPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ------VPFLAMAG 72 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHH---CCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT------CCEEEEET
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHH---CHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEech
Confidence 3568999999999998888765533 45678888999999999999999999999999999998 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+.+.....+.....+..+|..+....|+||||||+|.+...+...............+..++..+++.... ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~ 145 (262)
T 2qz4_A 73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT-------DH 145 (262)
T ss_dssp TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT-------CC
T ss_pred HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC-------CC
Confidence 99887777777788888999988888999999999999854432211111111123444555555554321 25
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHH-HHHHHhhcCCCChhhHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+++|+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++...+...+.+. +..++..+.|+++++|..+++.|
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998887776664 57899999999999999999998
Q ss_pred HHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
+..|..+ ....++.+||..++....+.
T Consensus 226 ~~~a~~~-----------~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 226 ALHAARE-----------GHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HTC-------------------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHc-----------CCCCCCHHHHHHHHHHhccC
Confidence 8666533 22467888888888776554
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=4.4e-27 Score=265.37 Aligned_cols=248 Identities=23% Similarity=0.311 Sum_probs=200.6
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+.+|++|+|.+.+++.+.+.+..+- .+..|...+...|+++||+||||||||++|+++|+.++ .+++.++
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~---~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~------~~f~~is 81 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLK---DPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN------VPFFHIS 81 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHH---CTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT------CCEEEEE
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhh---ChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCeeeCC
Confidence 45689999999999999988775533 45678889999999999999999999999999999998 7889999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++.....+.....++.+|..+....|+||||||+|.+...+....+ +.......++..|+..++++....
T Consensus 82 ~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~-g~~~~~~~~l~~LL~~ld~~~~~~------- 153 (476)
T 2ce7_A 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG-GGHDEREQTLNQLLVEMDGFDSKE------- 153 (476)
T ss_dssp GGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGG-------
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC-cCcHHHHHHHHHHHHHHhccCCCC-------
Confidence 999887777777788899999998889999999999999865432211 112223356777888888765432
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+++||++||.++.+|++++|||||+..|.++.|+.++|.+|++.+++...+. .+..+..++..+.|++++||.++|++|
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999988775443 222378899999999999999999999
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccccc
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 490 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p 490 (799)
+..|..+ ....++.+||..++..+.+
T Consensus 233 al~A~~~-----------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 233 ALLAARE-----------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHT-----------TCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHc-----------CCCeecHHHHHHHHHHHhc
Confidence 8877643 2246888999988877654
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=7.7e-27 Score=248.67 Aligned_cols=248 Identities=23% Similarity=0.354 Sum_probs=203.5
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..|++++|.+.+++.+.+.+...+. .+..|...|+..++++||+||||||||++|+++|+.++ .+++.+++
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~------~~~~~v~~ 84 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLK--HPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN------ATFIRVVG 84 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT------CEEEEEEG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeh
Confidence 45789999999999999998876665 66788889999999999999999999999999999998 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+.+.....+.....+..+|..+....|+||||||+|.+.+.+.+..... .......+..+++.+++.... .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~~~-------~~ 156 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG-DREVQRTLMQLLAEMDGFDAR-------GD 156 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGG-GGHHHHHHHHHHHHHHTTCSS-------SS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCc-cHHHHHHHHHHHHHhhCCCCC-------CC
Confidence 9998888888888899999999888999999999999986554432222 222223344444444443322 25
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+++|+|||.++.+++++++++||+..+.++.|+.+++.+|++.++....+. .+..+..++..+.|++++++..+|+.|.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~ 235 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAG 235 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765544 2334789999999999999999999999
Q ss_pred HHHhcccccCCCcccccccccceecccchhcccccc
Q 003743 455 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 490 (799)
Q Consensus 455 ~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p 490 (799)
..|+.+. ...++.+|+..++..+.+
T Consensus 236 ~~a~~~~-----------~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 236 MNAIREL-----------RDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHTT-----------CSSBCHHHHHHHHHHHHH
T ss_pred HHHHHhc-----------cCcCCHHHHHHHHHHHHh
Confidence 8887652 245888999888877644
No 46
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1e-26 Score=244.09 Aligned_cols=249 Identities=21% Similarity=0.277 Sum_probs=192.3
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEE
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 290 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~ 290 (799)
....+..|++++|.+.+++.+.+.+..+. .+..|...+...++++||+||||||||++++++|+.++ .+++
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~ 74 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLR---EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFF 74 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHH---CGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT------CCEE
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHh---CHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CCEE
Confidence 34456789999999999999887665433 44567778888899999999999999999999999987 6788
Q ss_pred EEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 003743 291 FVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 370 (799)
Q Consensus 291 ~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~ 370 (799)
.++++.+.....+.....+..+|..+....|+++||||+|.+...+....+. ...........++..+++....
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~----- 148 (257)
T 1lv7_A 75 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGN----- 148 (257)
T ss_dssp EECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC-TTCHHHHHHHHHHHHHHTCCSS-----
T ss_pred EEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCC-CchHHHHHHHHHHHHhhCcccC-----
Confidence 8999888776666666778888998887789999999999998654332111 1122234556666667765432
Q ss_pred CCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHH
Q 003743 371 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 450 (799)
Q Consensus 371 ~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv 450 (799)
.++++|++||.++.+++++.|++||+..+.++.|+.++|.+|++.++....+. ++..+..++..+.||+++||..+|
T Consensus 149 --~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 149 --EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp --SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred --CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHH
Confidence 25899999999999999999999999999999999999999999988765432 223367889999999999999999
Q ss_pred HHHHHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 451 DRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 451 ~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
++|+..|..+ ....++.+||..++..+
T Consensus 226 ~~a~~~a~~~-----------~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 226 NEAALFAARG-----------NKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHT-----------TCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----------CCCcccHHHHHHHHHHH
Confidence 9999887654 22468888888877654
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=3.8e-27 Score=266.47 Aligned_cols=228 Identities=21% Similarity=0.294 Sum_probs=181.2
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-ccCCceeeEEEEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL-EHHKDLVAHIVFV 292 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l-~~~~~~~~~~~~v 292 (799)
.+..|++|+|++.+++.+.+.+...+. .+..|.. +..+++++|||||||||||++|+++|+.+ + .+++.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~--~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v 199 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIK--FPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSI 199 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHH--CTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhh--CHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEE
Confidence 456799999999999999887754443 3344443 34567899999999999999999999998 5 678899
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCC
Q 003743 293 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 372 (799)
Q Consensus 293 ~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~ 372 (799)
+++++...+.+.....++.+|..+....|+||||||||.+++.+.... ......+...|+..+++.... .
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~lL~~l~~~~~~------~ 269 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE----SEAARRIKTEFLVQMQGVGVD------N 269 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC----CGGGHHHHHHHHTTTTCSSCC------C
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc----ccHHHHHHHHHHHHHhCcccC------C
Confidence 999888776666666788899988888999999999999986544321 222335666777767664321 1
Q ss_pred CCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 373 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 373 ~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
..++||+|||.++.+|++++| ||+..+.++.|+.++|..|++.++...+..+++..++.++..+.||+++||..+|+.
T Consensus 270 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 358999999999999999999 999999999999999999999999888777889999999999999999999999999
Q ss_pred HHHHHhcccc
Q 003743 453 TVHAAVGRYL 462 (799)
Q Consensus 453 A~~~a~~r~~ 462 (799)
|+..++++..
T Consensus 348 a~~~a~r~~~ 357 (444)
T 2zan_A 348 ALMQPVRKVQ 357 (444)
T ss_dssp HHTHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 48
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=3.1e-27 Score=285.01 Aligned_cols=258 Identities=41% Similarity=0.647 Sum_probs=231.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
+...|++++|++.+++.|.+.+..++.++++|..++..++.++||+||||||||++|+++|..++.+++.++++++.+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhc
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 663 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~ 663 (799)
.|..+..++.+|+.+....|++|||||+|.+.++++........++++.|+..|++......+++|++||+++.+|+++.
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~ 358 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHh
Confidence 99999999999999999999999999999999988776677778999999999999888888999999999999999999
Q ss_pred CCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC-----
Q 003743 664 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN----- 738 (799)
Q Consensus 664 r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~----- 738 (799)
+++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..+|+.|+..++++........
T Consensus 359 r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~ 438 (806)
T 1ypw_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (806)
T ss_dssp STTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCC
T ss_pred cccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccc
Confidence 999999999999999999999999999999888889999999999999999999999999999887754322110
Q ss_pred -CCCCCCcccHHHHHHHHhhcCCC
Q 003743 739 -EPGKMPVITDALLKSIASKARPS 761 (799)
Q Consensus 739 -~~~~~~~it~e~l~~a~~~~~~~ 761 (799)
+......++.+++..++....|+
T Consensus 439 ~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 439 AEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hhhhhhhhhhhhhhhccccccCch
Confidence 00123456778888888776653
No 49
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.94 E-value=4.1e-28 Score=275.70 Aligned_cols=368 Identities=16% Similarity=0.203 Sum_probs=228.4
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
...+++++|.+.+++.+...+..+. .+..+++++|||||||||||++|+++|+.++.. .+++.+++
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~----~~~~~~~~ 98 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIK----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSK----VPFCPMVG 98 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHH----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT----SCEEEEEG
T ss_pred hhchhhccCHHHHHHHHHHHHHHHH----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC----ceEEEEeH
Confidence 4457999999999888776554332 245567899999999999999999999998743 57888999
Q ss_pred ccccccchhhHHHHHHHHHHHH---HhcCCcEEEEccccccccCCCCCCCCCCchhHH---------------HHHHHHH
Q 003743 295 SRLSLEKGPIIRQALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI---------------ALTKFLV 356 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a---~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~---------------~l~~~Ll 356 (799)
+.+...+.+.... +..+|..+ ....|+||||||+|.+++.+......+...... .+...++
T Consensus 99 ~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll 177 (456)
T 2c9o_A 99 SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIF 177 (456)
T ss_dssp GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHH
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHH
Confidence 9999888888776 88899988 667899999999999997665432111100000 0111233
Q ss_pred HHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeE--EEeccCC--CHHHHHHHHHHHhhhcccCCCHHHHH
Q 003743 357 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF--HVQLPAP--AASERKAILEHEIQRRSLECSDEILL 432 (799)
Q Consensus 357 ~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~--~i~~~~p--~~~er~~Il~~~l~~~~~~~~~~~l~ 432 (799)
..++..... ....++|++|||.++.+|+++.|||||+. .+.+|.| +.++|.+|++.+.. ..++
T Consensus 178 ~~l~~~~~~-----~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~--------~dl~ 244 (456)
T 2c9o_A 178 ESLQKERVE-----AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL--------HDLD 244 (456)
T ss_dssp HHHHHTTCC-----TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH--------HHHH
T ss_pred HHHhhccCC-----CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH--------HHHH
Confidence 333321111 11236666999999999999999999987 4555666 45778777764332 2478
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccccccccccccccccCCCCCCCCCCC
Q 003743 433 DVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVG 512 (799)
Q Consensus 433 ~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~ 512 (799)
.++..+.| ++|+..+|....... ...+.. .+
T Consensus 245 ~~a~~t~g--gadl~~l~~~i~~p~--------------------~~~I~~--------------------------~l- 275 (456)
T 2c9o_A 245 VANARPQG--GQDILSMMGQLMKPK--------------------KTEITD--------------------------KL- 275 (456)
T ss_dssp HTC-----------------------------------------------------------------------------
T ss_pred HHHHhCCC--hhHHHHHHhhhcccc--------------------hhhHHH--------------------------HH-
Confidence 88888888 888887774321000 000000 00
Q ss_pred ChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHH
Q 003743 513 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVR 592 (799)
Q Consensus 513 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~ 592 (799)
.+.+.+.+.+
T Consensus 276 -r~~I~~~l~~--------------------------------------------------------------------- 285 (456)
T 2c9o_A 276 -RGEINKVVNK--------------------------------------------------------------------- 285 (456)
T ss_dssp --CHHHHHHHH---------------------------------------------------------------------
T ss_pred -HHHHHHHHHH---------------------------------------------------------------------
Confidence 0000011111
Q ss_pred HHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe---------cC---CCCccC
Q 003743 593 DIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA---------TS---RPDLLD 659 (799)
Q Consensus 593 ~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t---------tn---~~~~ld 659 (799)
.++.... ..|.|+||||+|.| ...+.+.|++.|+. +...++|++| |+ .|..++
T Consensus 286 -~~~~g~~~v~~~VliIDEa~~l-----------~~~a~~aLlk~lEe--~~~~~~il~tn~~~~~i~~~~~~~~~~~l~ 351 (456)
T 2c9o_A 286 -YIDQGIAELVPGVLFVDEVHML-----------DIECFTYLHRALES--SIAPIVIFASNRGNCVIRGTEDITSPHGIP 351 (456)
T ss_dssp -HHHTTSEEEEECEEEEESGGGC-----------BHHHHHHHHHHTTS--TTCCEEEEEECCSEEECBTTSSCEEETTCC
T ss_pred -HHHhccccccceEEEEechhhc-----------CHHHHHHHHHHhhc--cCCCEEEEecCCccccccccccccccccCC
Confidence 1111100 11249999999999 35788999999984 3344666666 33 267799
Q ss_pred hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHC-CCCcHHHHHHHHHHHHHHHHHHHhcccCC
Q 003743 660 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT-EGFSGADLQALLSDAQLSAVHEILNNIDS 737 (799)
Q Consensus 660 ~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~-~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 737 (799)
|.+++ ||.. +.|++|+.++..+|++.++...+.. .+..+..++..+ .| +.+....+++.|...|..+
T Consensus 352 ~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~------- 420 (456)
T 2c9o_A 352 LDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN------- 420 (456)
T ss_dssp HHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT-------
T ss_pred hhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc-------
Confidence 99999 8876 5999999999999999887644432 333456677776 54 6666667777766555432
Q ss_pred CCCCCCCcccHHHHHHHHhhc
Q 003743 738 NEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 738 ~~~~~~~~it~e~l~~a~~~~ 758 (799)
+...||.+|+++++...
T Consensus 421 ----~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 421 ----GKDSIEKEHVEEISELF 437 (456)
T ss_dssp ----TCSSBCHHHHHHHHHHS
T ss_pred ----CCCccCHHHHHHHHHHh
Confidence 23479999999998764
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=1.2e-25 Score=241.00 Aligned_cols=263 Identities=19% Similarity=0.259 Sum_probs=202.2
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEE
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 290 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~ 290 (799)
....+..|++++|.+.+++.+.+.+...+. .+..|...+ .+++++||+||||||||++|+++|+.++ .+++
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~--~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~ 83 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSV--RPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS------ATFL 83 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHH--CGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEE
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhh--CHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeE
Confidence 334567899999999999998887754433 344455444 4578999999999999999999999998 7889
Q ss_pred EEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 003743 291 FVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 370 (799)
Q Consensus 291 ~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~ 370 (799)
.++|+.+.....+.....++.+|..+....|+||||||+|.+...+...... ....+...++..+++......
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~----~~~~~~~~ll~~l~~~~~~~~--- 156 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE----ASRRLKTEFLVEFDGLPGNPD--- 156 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----C----CSHHHHHHHHHHHHHCC-------
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcch----HHHHHHHHHHHHHhcccccCC---
Confidence 9999998887777777888888988888899999999999998654332211 112455667777776543210
Q ss_pred CCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHH
Q 003743 371 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 450 (799)
Q Consensus 371 ~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv 450 (799)
...+++|++||.++.+++++++ ||+..+.++.|+.+++..|++.++...+..++++.+..++..+.|++++++..+|
T Consensus 157 -~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 -GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred -CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1248999999999999999999 9999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHhcccccCC-Ccccccccccceecccchhcccccccc
Q 003743 451 DRTVHAAVGRYLHSD-SSFEKHIKPTLVRDDFSQAMHEFLPVA 492 (799)
Q Consensus 451 ~~A~~~a~~r~~~~~-~~~~~~~~~~l~~edf~~al~~~~p~~ 492 (799)
+.|...++++..... ..........++.+||..++....|+.
T Consensus 234 ~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 234 KDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp HHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC
Confidence 999888887653211 111111235688899998888776643
No 51
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=246.38 Aligned_cols=259 Identities=18% Similarity=0.246 Sum_probs=202.0
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+..|++++|.+.+++.+.+.+...+. .+..|...+ ..++++||+||||||||++|+++|+.++ .+++.++
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~--~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~ 149 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPML--RPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSG------ATFFSIS 149 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHH--CTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhh--ChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEe
Confidence 356789999999999999988765443 334444443 5678999999999999999999999998 8899999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
|+.+.....+.....++.+|..+....|+||||||||.+.+.+... .......+...++..+++..... ..
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~-----~~ 220 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG----EHESSRRIKTEFLVQLDGATTSS-----ED 220 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----C-----CC
T ss_pred hHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC----cchHHHHHHHHHHHHHhcccccC-----CC
Confidence 9999888888888888999999888889999999999998654321 12223355666777777544211 12
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+++||++||.++.+++++++ ||...++++.|+.++|.+|+..++...+..++++.++.++..+.||++++|..+|+.|
T Consensus 221 ~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 58999999999999999999 9999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHhcccccCC-Ccccccccccceecccchhcccccccc
Q 003743 454 VHAAVGRYLHSD-SSFEKHIKPTLVRDDFSQAMHEFLPVA 492 (799)
Q Consensus 454 ~~~a~~r~~~~~-~~~~~~~~~~l~~edf~~al~~~~p~~ 492 (799)
...+++++.... ..........++.+||..++..+.|+.
T Consensus 299 ~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 299 SLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 888877543111 111112335688899999888877654
No 52
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=248.93 Aligned_cols=263 Identities=17% Similarity=0.232 Sum_probs=198.9
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....+..|++++|.+.+++.+.+.+...+. .+.+|...+ .+++++|||||||||||++|+++|+.++ .
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~--~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~------~ 174 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSL--RPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESN------A 174 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHH--CTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTT------C
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhcc--CHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhc------C
Confidence 344445567899999999999999988755443 344555555 3478999999999999999999999998 8
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 367 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~ 367 (799)
+++.++|+.+...+.+.....+..+|..+....|+||||||||.++..+.... ......+...|+..+++.....
T Consensus 175 ~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~- 249 (389)
T 3vfd_A 175 TFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE----HDASRRLKTEFLIEFDGVQSAG- 249 (389)
T ss_dssp EEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC----
T ss_pred cEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc----chHHHHHHHHHHHHhhcccccC-
Confidence 99999999999888777788889999999888999999999999986443221 1223356667777777665321
Q ss_pred CccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHH
Q 003743 368 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 447 (799)
Q Consensus 368 ~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~ 447 (799)
..+++||+|||.++.++++++| ||...++++.|+.++|.+|++.++...+..++++.+..++..+.|++++++.
T Consensus 250 ----~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 250 ----DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp ------CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred ----CCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 1259999999999999999999 9998999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCC-Ccccccccccceecccchhcccccc
Q 003743 448 ILVDRTVHAAVGRYLHSD-SSFEKHIKPTLVRDDFSQAMHEFLP 490 (799)
Q Consensus 448 ~lv~~A~~~a~~r~~~~~-~~~~~~~~~~l~~edf~~al~~~~p 490 (799)
.+++.|...+++++.... ..........++.+||..++....|
T Consensus 324 ~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 324 ALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 999999888887653211 1111122346778888877766544
No 53
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=3.1e-25 Score=251.65 Aligned_cols=248 Identities=21% Similarity=0.295 Sum_probs=197.6
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+.+|++++|.+.++..+.+.+..+ . .+..|...+...++++||+||||||||+|++++|+.++ .+++.++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l-~--~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~i~ 96 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFL-K--NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITAS 96 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHH-H--CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHh-h--chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEe
Confidence 4567999999999999888766543 3 45678888999999999999999999999999999987 7788999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
++++.....+.....+..+|..+....|+++||||||.+...+....+ .........++.++..+++.... .
T Consensus 97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~-~~~~e~~~~l~~LL~~Ldg~~~~-------~ 168 (499)
T 2dhr_A 97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------T 168 (499)
T ss_dssp GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTT-TSSHHHHHHHHHHHHHGGGCCSS-------C
T ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcC-CCcHHHHHHHHHHHHHhcccccC-------c
Confidence 999887777777777888888886667899999999999754432111 11222335556666667765432 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHHhhcCCCChhhHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~-~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.++++++||.++.+|++++|||||+..|.|+.|+.++|.+|++.+++.. .++++ .+..++..+.|++++||.++|++
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~--~l~~dv~l~~lA~~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNE 246 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS--CCCCSSTTHHHHTTSCSCCHHHHHHHHHH
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999887643 34433 38889999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhccccccc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 491 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~ 491 (799)
|+..|..+ ....++.+||..++..+.+.
T Consensus 247 Aa~~A~~~-----------~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 247 AALLAARE-----------GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHTTT-----------CCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHh-----------CCCccCHHHHHHHHHHHhcc
Confidence 98777543 22458889999888776543
No 54
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=2.2e-24 Score=225.82 Aligned_cols=242 Identities=21% Similarity=0.298 Sum_probs=183.5
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+.+|++++|.+..+..+.+.+..+ . .+..+...++..+++++|+||||||||++++++++.++ ..++.++
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~-~--~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~ 81 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFL-K--NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITAS 81 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHH-H--CHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEE
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHH-H--CHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEee
Confidence 3567899999999998887755443 2 34567788888889999999999999999999999987 6677888
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
+.++.....+.....+..+|+.+....|+++++||+|.+...+....+ ............++..+++.... .
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~-------~ 153 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------T 153 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTT-------C
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc-ccchHHHHHHHHHHHHHhCCCCC-------C
Confidence 877655555555667788888886667899999999998754332111 11222234555666666654332 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHHhhcCCCChhhHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~-~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.++++++||.++.+|++++|++||+..++++.|+.++|.+|++.++... .+.++ .+..++..+.|++++||..+|++
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNE 231 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999887653 33333 38889999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 485 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al 485 (799)
|+..|..+ ....++.+|+..++
T Consensus 232 a~~~a~~~-----------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 232 AALLAARE-----------GRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHT-----------TCSSBCHHHHHHHT
T ss_pred HHHHHHHh-----------cCCCcCHHHHHHHh
Confidence 98877643 12357777777654
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=1.6e-25 Score=239.45 Aligned_cols=174 Identities=20% Similarity=0.316 Sum_probs=139.2
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHh----HhcCCeEEEEcccccc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSI 614 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~ILfiDEid~l 614 (799)
+.+++.++||+||||||||++|+++|+.++.+++.++++++.+.|+|.++..++++|..| +...|+||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 456778999999999999999999999999999999999999999999999999999998 5778999999999999
Q ss_pred cCCCCCCC--CchhhHHHHHHHhhccCcc-----------ccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHH
Q 003743 615 APKRGHDN--TGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRE 681 (799)
Q Consensus 615 ~~~r~~~~--~~~~~r~~~~ll~~ld~~~-----------~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~ 681 (799)
.++++... .....++.+.|+..||+.. ...+++||+|||+++.+|++++|||||++.++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 88654322 1234577799999988443 45679999999999999999999999999887 469999
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHH
Q 003743 682 RLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQA 718 (799)
Q Consensus 682 r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~ 718 (799)
|.+|++.++... +++.+.++..++||++++|..
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999887643 567899999999999998864
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=8.8e-27 Score=246.00 Aligned_cols=252 Identities=22% Similarity=0.278 Sum_probs=183.5
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..|++++|.+.+++.+.+.+.. +. .+..|...+...++++||+||||||||++|+++|+.++ .+++.++|
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~-~~--~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~v~~ 77 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDF-LK--YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH------VPFFSMGG 77 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHH-HH--CHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT------CCCCCCCS
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-HH--ChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEech
Confidence 45789999999999998886654 33 56678888999999999999999999999999999988 56777888
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
+.+.....+.....+..+|..+....|+||||||+|.+...+...............+..|+..+++.... ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~ 151 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE------NAP 151 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS------CSC
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC------CCC
Confidence 77655444333334556777777778999999999999854321110000000001223344444433221 225
Q ss_pred EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+++|+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++....+. ++..++.++..+.|+++++|.++|++|+
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~ 230 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAA 230 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHH
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988754432 2233677888999999999999999988
Q ss_pred HHHhcccccCCCcccccccccceecccchhccccccccc
Q 003743 455 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 493 (799)
Q Consensus 455 ~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~ 493 (799)
..|..+ ....++.+++..++....|...
T Consensus 231 ~~a~~~-----------~~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 231 LLAGRN-----------NQKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp HTTSSS-----------CCCSCCHHHHHTSCTTCCCCCC
T ss_pred HHHHHh-----------ccCCcCHHHHHHHHHHHhhcch
Confidence 766432 1245788888888877666543
No 57
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=1.4e-23 Score=222.75 Aligned_cols=242 Identities=21% Similarity=0.298 Sum_probs=182.1
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+.+|++++|.+.+++.+.+.+..+ . .+..+...++..+++++|+||||||||++++++++.+. ..++.++
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~-~--~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~ 105 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFL-K--NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITAS 105 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHH-H--CHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHH-H--CHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEec
Confidence 4667999999999998887755543 2 34567788888888999999999999999999999987 6677888
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 373 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~ 373 (799)
+.++.....+.....+..+|+.+....|+++|+||+|.+...+....+ ............++..+++.... .
T Consensus 106 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~-~~~~~~~~~~~~ll~~lsgg~~~-------~ 177 (278)
T 1iy2_A 106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------T 177 (278)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTT-------C
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccC-CcchHHHHHHHHHHHHHhCCCCC-------C
Confidence 877655555555667788888887677899999999998754322111 11122223444555555543321 2
Q ss_pred CEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHHhhcCCCChhhHHHHHHH
Q 003743 374 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 374 ~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~-~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.++++++||.++.+|+++.|++||+..++++.|+.++|.+|++.+++.. .++++ .+..++..+.|++++||..+|++
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~~~~dl~~l~~~ 255 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNE 255 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC--CCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999887653 33333 37889999999999999999999
Q ss_pred HHHHHhcccccCCCcccccccccceecccchhc
Q 003743 453 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 485 (799)
Q Consensus 453 A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al 485 (799)
|+..|..+ ....++.+|+..++
T Consensus 256 a~~~a~~~-----------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 256 AALLAARE-----------GRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHT-----------TCCSBCHHHHHHHT
T ss_pred HHHHHHHh-----------CCCCcCHHHHHHHh
Confidence 98777543 12357777776654
No 58
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.88 E-value=9.8e-23 Score=217.86 Aligned_cols=184 Identities=13% Similarity=0.180 Sum_probs=132.6
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHH----HhcCCcEEE
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVI 325 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a----~~~~p~IL~ 325 (799)
.+.+.|+++|||||||||||++|+++|+.++ .+++.++|+.+...+.+.....+..+|..+ ....|+|||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHT------CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4677889999999999999999999999998 889999999998888888888888888888 466899999
Q ss_pred EccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----cCCccCCCCEEEEEecCCCCccchhhhccCceeEEE
Q 003743 326 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHV 401 (799)
Q Consensus 326 IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~----~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i 401 (799)
|||||.+.+.+... .+.......+...|++++|+.... ........+++||+|||.++.+|++++|||||+..+
T Consensus 105 iDEiD~~~~~~~~~--~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 105 INDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp EECCC----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred EechhhhcCCCCCC--ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 99999998633221 111112335668888888743210 001112346999999999999999999999999888
Q ss_pred eccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHH
Q 003743 402 QLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 448 (799)
Q Consensus 402 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~ 448 (799)
.+ |+.++|.+|++.++....+. .+.++..+.+|++++|..
T Consensus 183 ~~--P~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 183 WA--PTREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp EC--CCHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred eC--cCHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 74 69999999999988866553 556677778888888764
No 59
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.87 E-value=3.4e-21 Score=214.26 Aligned_cols=389 Identities=16% Similarity=0.151 Sum_probs=182.8
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCC-CCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL-PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~-~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l 297 (799)
..|+|.+.+++.+...+..... +...+..... .+++++||+||||||||++|+++|+.++ .+++.++++.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~--r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~------~~~~~v~~~~~ 86 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWR--RMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKF 86 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH--HHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEGGGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHh--hhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC------CCceeecchhh
Confidence 3679999988888766633221 2222222222 2567899999999999999999999998 78888999887
Q ss_pred cc-cchh-hHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCE
Q 003743 298 SL-EKGP-IIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 375 (799)
Q Consensus 298 ~~-~~~~-~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v 375 (799)
.. .+.+ .....++.+|..+... +++||++.+.... .......++..|+..||++.+.. .+
T Consensus 87 ~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~-------~v 148 (444)
T 1g41_A 87 TEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEV-------EN 148 (444)
T ss_dssp C----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC------------------------------------------
T ss_pred cccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccc-------cc
Confidence 65 3444 3667778888777543 4589988765211 11223477888888899876432 12
Q ss_pred EEEEe-cCCCCccchhhhccCceeEEEeccCCCHH-HHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 003743 376 AFVAS-AQSLEKIPQSLTSSGRFDFHVQLPAPAAS-ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 376 ~vI~t-tn~~~~ld~aL~r~gRf~~~i~~~~p~~~-er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 453 (799)
+++ ||+++.+|++|+|||||+..|+++.|+.. .+.+|+.. .++ +.+ +.+++.++...
T Consensus 149 --~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~----~g~-------~~~--------~~~~~~~~~~~ 207 (444)
T 1g41_A 149 --HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP----PGM-------EEM--------TNQLQSLFQNL 207 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC----CCh-------HHH--------HHHHHHHHHhh
Confidence 444 99999999999999999999999999987 67777653 110 000 01111111100
Q ss_pred HHHHhcccccCCCcccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChh
Q 003743 454 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPN 533 (799)
Q Consensus 454 ~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~ 533 (799)
.+. ......++..+-...+.
T Consensus 208 --------~~~-----~~~~~~~~v~~a~~~l~----------------------------------------------- 227 (444)
T 1g41_A 208 --------GSD-----KTKKRKMKIKDALKALI----------------------------------------------- 227 (444)
T ss_dssp -------------------------------CC-----------------------------------------------
T ss_pred --------cCC-----CCcceeeeHHHHHHHHH-----------------------------------------------
Confidence 000 00000111110000000
Q ss_pred HHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEccccc
Q 003743 534 IFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS 613 (799)
Q Consensus 534 ~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~ 613 (799)
.+-..+.+ ..+...++.++.|..+. |||+||||+
T Consensus 228 -------------------------------------------~~e~~~l~-~~~~~~~~ai~~ae~~~--il~~DEidk 261 (444)
T 1g41_A 228 -------------------------------------------DDEAAKLI-NPEELKQKAIDAVEQNG--IVFIDEIDK 261 (444)
T ss_dssp -------------------------------------------GGGSCSSC-CHHHHHHHHHHHHHHHC--EEEEETGGG
T ss_pred -------------------------------------------HHHHHHcc-CHHHHHHHHHHHhccCC--eeeHHHHHH
Confidence 00000001 12334455555563332 999999999
Q ss_pred ccCCCCCCCCchh-hHHHHHHHhhccCcc--------ccCcEEEEEec----CCCCccChhhcCCCCcceeeecCCCCHH
Q 003743 614 IAPKRGHDNTGVT-DRVVNQFLTELDGVE--------VLTGVFVFAAT----SRPDLLDAALLRPGRLDRLLFCDFPSPR 680 (799)
Q Consensus 614 l~~~r~~~~~~~~-~r~~~~ll~~ld~~~--------~~~~vlvi~tt----n~~~~ld~al~r~gRf~~~i~~~~p~~~ 680 (799)
++.+.+....... ..++..||..|++-. ..+++++|+|. +.|..+-|.|+. ||+.++.|+.++.+
T Consensus 262 i~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~ 339 (444)
T 1g41_A 262 ICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAA 339 (444)
T ss_dssp GSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHH
T ss_pred HhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHH
Confidence 9866432222222 237789999998732 45678999887 355556688988 99999999999999
Q ss_pred HHHHHHH---H-----HHcc---CCCC---CcccHHHHHH-------HCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 003743 681 ERLDILK---V-----ISRK---LPLA---DDVDLEAIAH-------MTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 739 (799)
Q Consensus 681 ~r~~Il~---~-----~~~~---~~~~---~~~~~~~la~-------~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 739 (799)
+..+|+. . +... .+.. .+-.+..|++ ++...-++.++.++......+..+....
T Consensus 340 e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~----- 414 (444)
T 1g41_A 340 DFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM----- 414 (444)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-----
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-----
Confidence 9999993 1 1111 1211 2223455554 3455666777777777666665554321
Q ss_pred CCCCCcccHHHHHHHHhhcCCCCCHHHHHHH
Q 003743 740 PGKMPVITDALLKSIASKARPSVSEAEKLRL 770 (799)
Q Consensus 740 ~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~ 770 (799)
......||.+.+.+.+. +.+.+++..+|
T Consensus 415 ~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 415 NGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp TTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred CCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 12446799999988774 44455555443
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=7.7e-24 Score=240.53 Aligned_cols=199 Identities=19% Similarity=0.278 Sum_probs=143.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC--CeEEEEeccchhhhh
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKY 583 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~~l~~~~ 583 (799)
..|++++|++++++.+..++... ..+..+++++||+||||||||++|+++|+.++ .+|+.++++++.++|
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred hchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 56899999999999988876532 23445667999999999999999999999998 999999999999999
Q ss_pred hcccHHHHHHHHHHh---HhcCCeEEEEcccccccCCCCCCCCchh-------------------hHHHHHHHhhcc--C
Q 003743 584 IGASEQAVRDIFSKA---TAAAPCLLFFDEFDSIAPKRGHDNTGVT-------------------DRVVNQFLTELD--G 639 (799)
Q Consensus 584 ~g~se~~i~~~f~~a---~~~~p~ILfiDEid~l~~~r~~~~~~~~-------------------~r~~~~ll~~ld--~ 639 (799)
+|+++. ++++|..| +...|+||||||+|.++++|+....+.. .++.+.++..|+ +
T Consensus 106 ~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 106 IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 999987 99999999 7888999999999999988765421111 122333444443 3
Q ss_pred ccccCcEEEEEecCCCCccChhhcCCCCcce--eeecCCCC--HHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHH
Q 003743 640 VEVLTGVFVFAATSRPDLLDAALLRPGRLDR--LLFCDFPS--PRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGAD 715 (799)
Q Consensus 640 ~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~--~i~~~~p~--~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~d 715 (799)
+...+.++|++|||+++.+|++++||+||++ .+++|.|+ .++|.+|++.+.. .|++.++..++| |+|
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gad 255 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQD 255 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC----------
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhH
Confidence 4456668888999999999999999999998 56777775 4677777764432 268888899998 999
Q ss_pred HHHHHHH
Q 003743 716 LQALLSD 722 (799)
Q Consensus 716 i~~~~~~ 722 (799)
+.++|..
T Consensus 256 l~~l~~~ 262 (456)
T 2c9o_A 256 ILSMMGQ 262 (456)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9999854
No 61
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=8.6e-21 Score=204.18 Aligned_cols=215 Identities=16% Similarity=0.213 Sum_probs=169.0
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCC---CCCCceeeecCCCCcHHHHHHHHHHhC-------CCeEEEEeccc
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGPE 578 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~vLL~GppGtGKT~la~alA~~~-------~~~~i~i~~~~ 578 (799)
.+++|++++++.+.+.+..+. .+..+...++ .+..++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 378999999999999887643 2444544443 344579999999999999999999887 34899999999
Q ss_pred hhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc-
Q 003743 579 LLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL- 657 (799)
Q Consensus 579 l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~- 657 (799)
+.+.+.|.+...+..+|..+ .++||||||+|.+.+.++. ......+++.|+..|+. ...+++||++||.+..
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--NRDDLVVILAGYADRME 182 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHH
Confidence 99999999999999999887 3569999999999865432 33457788899998873 3456788888886542
Q ss_pred ----cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHH-------CCCCcHHHHHHHHHHHHH
Q 003743 658 ----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHM-------TEGFSGADLQALLSDAQL 725 (799)
Q Consensus 658 ----ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~-------~~g~sg~di~~~~~~a~~ 725 (799)
++|++++ ||+..++|++|+.+++.+|++.++...++. .+..++.++.. ...-+++++.+++..|..
T Consensus 183 ~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 183 NFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 5899999 999999999999999999999998876543 22334555554 233458999999999998
Q ss_pred HHHHHHhc
Q 003743 726 SAVHEILN 733 (799)
Q Consensus 726 ~a~~~~~~ 733 (799)
.+..+...
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=9.2e-21 Score=203.96 Aligned_cols=221 Identities=15% Similarity=0.166 Sum_probs=168.7
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCC---CCceEEEECCCCCcHHHHHHHHHHHhccCCc-eeeEEEEEecc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLP---LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCCS 295 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~---~~~~vLL~GppGtGKT~la~alA~~l~~~~~-~~~~~~~v~~s 295 (799)
+++|.+.+++.+.+.+.... ....+...|+. .+.++||+||||||||++|+++|+.+..... ...+++.++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~---~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL---VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH---HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHH---hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 68999999999988775543 23334444443 3457999999999999999999999864321 12478899999
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCE
Q 003743 296 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 375 (799)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v 375 (799)
.+.....+.....+..+|..+ .++||||||+|.+...+.... ........|+..++.... ++
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~------~~~~~~~~Ll~~l~~~~~---------~~ 170 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD------YGQEAIEILLQVMENNRD---------DL 170 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C------CTHHHHHHHHHHHHHCTT---------TC
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc------ccHHHHHHHHHHHhcCCC---------CE
Confidence 988877777777777777765 568999999999984332211 112566677777776432 47
Q ss_pred EEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhh-------cCCCCh
Q 003743 376 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 443 (799)
Q Consensus 376 ~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~-------~~g~s~ 443 (799)
.+|+++|... .++|+|++ ||+.+++|++|+.+++.+|++.++...+..++++.+..++.. ....++
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~ 248 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANA 248 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcH
Confidence 8888887643 35799999 999999999999999999999999999999999999988886 334468
Q ss_pred hhHHHHHHHHHHHHhccccc
Q 003743 444 YDLEILVDRTVHAAVGRYLH 463 (799)
Q Consensus 444 ~dl~~lv~~A~~~a~~r~~~ 463 (799)
+++.++++.++..+..|...
T Consensus 249 r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 249 RSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887777653
No 63
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.81 E-value=2.8e-20 Score=233.92 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=113.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCC----------hhHHhh------CC------------CCCCCceeeecCCCCcH
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKF----------PNIFAQ------AP------------LRLRSNVLLYGPPGCGK 556 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~----------~~~~~~------~~------------~~~~~~vLL~GppGtGK 556 (799)
...|.+++|++++++.+.+.+.+++++ ++.+.. .| ++..+.+|+||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 478999999999999999999988843 445544 22 33344499999999999
Q ss_pred HHHHHHHHHhC---CCeEEEEeccchh------------hhhhcc----cHHHHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 557 THIVGAAAAAC---SLRFISVKGPELL------------NKYIGA----SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 557 T~la~alA~~~---~~~~i~i~~~~l~------------~~~~g~----se~~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
|.+|++++.+. +.+.+.|+..+.. ++|+++ +|+.++.+|..|+...||+||+||+++|++.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 99999999765 5666666666543 567777 8999999999999999999999999999998
Q ss_pred C---CC--C-CCchhhHHHHHHHhhccCccccCcEEEEEecCCC
Q 003743 618 R---GH--D-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 655 (799)
Q Consensus 618 r---~~--~-~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~ 655 (799)
+ +. + ..+...|++++++++|+++....+|+|| +||+.
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 3 21 1 2367789999999999998888888888 67765
No 64
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.79 E-value=5.6e-19 Score=194.81 Aligned_cols=218 Identities=20% Similarity=0.224 Sum_probs=159.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC--CeEEEEeccchhhhh
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKY 583 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~~l~~~~ 583 (799)
..|++++|.+.+++.+....... ..+..++.++||+||||||||++|+++|+.++ .+++.+++..+...+
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 34899999999988876554321 11233456899999999999999999999987 488889887744333
Q ss_pred hc-------------------------------------------------ccHHHHHHHHHHhHh-----c----CCeE
Q 003743 584 IG-------------------------------------------------ASEQAVRDIFSKATA-----A----APCL 605 (799)
Q Consensus 584 ~g-------------------------------------------------~se~~i~~~f~~a~~-----~----~p~I 605 (799)
.+ .....++..|..+.. + .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 22 223445555554432 1 2689
Q ss_pred EEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEec-----------CCCCccChhhcCCCCcceeeec
Q 003743 606 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT-----------SRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 606 LfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~tt-----------n~~~~ld~al~r~gRf~~~i~~ 674 (799)
|||||+|.+. ....+.|++.++. ....++++++. |.+..+++++++ ||.. +.|
T Consensus 193 l~IDEi~~l~-----------~~~~~~L~~~le~--~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~ 256 (368)
T 3uk6_A 193 LFIDEVHMLD-----------IESFSFLNRALES--DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VST 256 (368)
T ss_dssp EEEESGGGSB-----------HHHHHHHHHHTTC--TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEE
T ss_pred EEEhhccccC-----------hHHHHHHHHHhhC--cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEe
Confidence 9999999983 4567788887763 23345555554 347789999999 8876 799
Q ss_pred CCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHH
Q 003743 675 DFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKS 753 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~ 753 (799)
++|+.+++.+|++.++...+.. .+..++.++..+.+.+.+++.++|+.|...|..+ +...||.+|+++
T Consensus 257 ~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-----------~~~~It~~~v~~ 325 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-----------KGTEVQVDDIKR 325 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-----------TCSSBCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----------CCCCCCHHHHHH
Confidence 9999999999999888765443 3445778888887568899999999888777543 235799999999
Q ss_pred HHhhc
Q 003743 754 IASKA 758 (799)
Q Consensus 754 a~~~~ 758 (799)
++...
T Consensus 326 a~~~~ 330 (368)
T 3uk6_A 326 VYSLF 330 (368)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 99763
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=8.4e-19 Score=188.33 Aligned_cols=243 Identities=19% Similarity=0.238 Sum_probs=165.1
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhC-CCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh-hhhcc
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQA-PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGA 586 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~-~~~g~ 586 (799)
..++|++++++.+...+..+.....+.... +-..+.++||+||||||||++|+++|+.++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 357899999999987775422111110000 0123568999999999999999999999999999999999876 56665
Q ss_pred c-HHHHHHHHHHh-----HhcCCeEEEEcccccccCCCCCCCCch-hhHHHHHHHhhccCcc--------ccCcEEEEEe
Q 003743 587 S-EQAVRDIFSKA-----TAAAPCLLFFDEFDSIAPKRGHDNTGV-TDRVVNQFLTELDGVE--------VLTGVFVFAA 651 (799)
Q Consensus 587 s-e~~i~~~f~~a-----~~~~p~ILfiDEid~l~~~r~~~~~~~-~~r~~~~ll~~ld~~~--------~~~~vlvi~t 651 (799)
. ...++.++..+ ....++||||||+|.+.+......... ...+.+.|+..|++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 4 34566766543 112357999999999987654322222 2235778888887542 2346777877
Q ss_pred ----cCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHH-----------HccCCCC---CcccHHHHHHHCC----
Q 003743 652 ----TSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI-----------SRKLPLA---DDVDLEAIAHMTE---- 709 (799)
Q Consensus 652 ----tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~-----------~~~~~~~---~~~~~~~la~~~~---- 709 (799)
++.+..+++++++ ||+..++|++|+.+++.+|++.. +...... .+..++.|+..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 5678889999998 99988999999999999999831 1112221 2333566666552
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 710 ---GFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 710 ---g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
+...+.+.++++.+...+..+... .......|+.+++++++...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhh
Confidence 356788888888776554433221 11223459999999998754
No 66
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=5.5e-19 Score=204.29 Aligned_cols=229 Identities=21% Similarity=0.256 Sum_probs=152.1
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh------
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN------ 581 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~------ 581 (799)
+.++.|++++++.+.+.+....... . .++.+++|+||||||||++|+++|..++.+++.+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~------~-~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK------S-LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS------S-CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc------c-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 4678999999999977665321111 1 14558999999999999999999999999999999877543
Q ss_pred ---hhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc-------------cCc
Q 003743 582 ---KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-------------LTG 645 (799)
Q Consensus 582 ---~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~-------------~~~ 645 (799)
.|+|.....+...|..+....| ||||||||++.+.+.. ..++.|+..|+.... ...
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 6778777888888988876666 9999999999765421 244567777754221 156
Q ss_pred EEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHH-----ccCCCC---CcccHHHH---HH-HCCCCcH
Q 003743 646 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-----RKLPLA---DDVDLEAI---AH-MTEGFSG 713 (799)
Q Consensus 646 vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~---~~~~~~~l---a~-~~~g~sg 713 (799)
++||+|||.++.++++|++ ||+ +|.|++|+.+++.+|++.++ +..++. -.++.+.+ +. ++.....
T Consensus 225 v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp CEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred eEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 8999999999999999999 995 78999999999999998765 233332 12333333 33 3322334
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcC
Q 003743 714 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR 759 (799)
Q Consensus 714 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~ 759 (799)
+++++.+..+...+..+.+.. ......||.+++.+++...+
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhCCcc
Confidence 666666555555555554431 23445799999999886544
No 67
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=1.5e-17 Score=181.28 Aligned_cols=209 Identities=19% Similarity=0.239 Sum_probs=154.8
Q ss_pred ecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee
Q 003743 207 ERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV 286 (799)
Q Consensus 207 ~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~ 286 (799)
..|.....+..|++++|.+..++.+...+...... -..+.++||+||||||||++|+++|+.++
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~----------~~~~~~vll~G~~GtGKT~la~~ia~~~~------ 80 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR----------NECLDHILFSGPAGLGKTTLANIISYEMS------ 80 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT----------TSCCCCEEEECSTTSSHHHHHHHHHHHTT------
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc----------CCCCCeEEEECcCCCCHHHHHHHHHHHhC------
Confidence 34555556778999999999999888877654321 13456799999999999999999999988
Q ss_pred eEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-
Q 003743 287 AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK- 365 (799)
Q Consensus 287 ~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~- 365 (799)
.+++.++|..+.. .+. +...+.. ...+++|||||||.+.. .....|+..++...-.
T Consensus 81 ~~~~~~~~~~~~~--~~~----~~~~~~~--~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~~~~~ 137 (338)
T 3pfi_A 81 ANIKTTAAPMIEK--SGD----LAAILTN--LSEGDILFIDEIHRLSP---------------AIEEVLYPAMEDYRLDI 137 (338)
T ss_dssp CCEEEEEGGGCCS--HHH----HHHHHHT--CCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCC--
T ss_pred CCeEEecchhccc--hhH----HHHHHHh--ccCCCEEEEechhhcCH---------------HHHHHHHHHHHhccchh
Confidence 7788899877642 222 2333332 25678999999999852 4555666666653210
Q ss_pred --------cCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhh
Q 003743 366 --------RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 437 (799)
Q Consensus 366 --------~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~ 437 (799)
........++.+|++||....++++|++ ||+..+.|++|+.+++..+++.++...+..++++.++.++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~ 215 (338)
T 3pfi_A 138 IIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKR 215 (338)
T ss_dssp -------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHT
T ss_pred hcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 0001112248999999999999999999 998899999999999999999999988888999999999996
Q ss_pred cCCCChhhHHHHHHHHHHHH
Q 003743 438 CDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 438 ~~g~s~~dl~~lv~~A~~~a 457 (799)
+.| +++++.++++.+...+
T Consensus 216 ~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 216 SRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp TTT-CHHHHHHHHHHHHHHH
T ss_pred HCc-CHHHHHHHHHHHHHHH
Confidence 655 6788888888876544
No 68
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.77 E-value=2.5e-18 Score=225.19 Aligned_cols=337 Identities=18% Similarity=0.175 Sum_probs=187.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHH-----------hcCCc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL-----------DHAPS 322 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~-----------~~~p~ 322 (799)
.++++||+||||||||++|+.++.... ...+..++++..... ..+...+...+.... ...++
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~-----~~~~~~infsa~ts~--~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSS-----LYDVVGINFSKDTTT--EHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCS-----SCEEEEEECCTTCCH--HHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEEeecCCCH--HHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 457899999999999999965544332 156677777765432 222222222111000 12346
Q ss_pred EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH--hc-cccCCccCCCCEEEEEecCCCC-----ccchhhhcc
Q 003743 323 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE--YG-EKRKSSCGIGPIAFVASAQSLE-----KIPQSLTSS 394 (799)
Q Consensus 323 IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~--~~-~~~~~~~~~~~v~vI~ttn~~~-----~ld~aL~r~ 394 (799)
||||||+|... .+..|.+ .....|.+.++. +. .....+....++.+|+|||++. .++++|+|
T Consensus 1339 VlFiDEinmp~---~d~yg~q------~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR- 1408 (2695)
T 4akg_A 1339 VLFCDEINLPK---LDKYGSQ------NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR- 1408 (2695)
T ss_dssp EEEEETTTCSC---CCSSSCC------HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred EEEeccccccc---ccccCch------hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh-
Confidence 99999998754 2333333 234445555553 11 1112222334689999999984 79999999
Q ss_pred CceeEEEeccCCCHHHHHHHHHHHhhhcccC------CCHHH-------HHHHHhh-------cCCCChhhHHHHHHHHH
Q 003743 395 GRFDFHVQLPAPAASERKAILEHEIQRRSLE------CSDEI-------LLDVASK-------CDGYDAYDLEILVDRTV 454 (799)
Q Consensus 395 gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~------~~~~~-------l~~la~~-------~~g~s~~dl~~lv~~A~ 454 (799)
|| ..+.++.|+.+++..|+..++....-. +.+.. ...+... ..-|+.+||..+++-.+
T Consensus 1409 -rf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll 1486 (2695)
T 4akg_A 1409 -HA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVY 1486 (2695)
T ss_dssp -TE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHH
T ss_pred -ee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHH
Confidence 99 489999999999999999887643210 11111 1111111 24678999888776655
Q ss_pred HHHhcccccCCCc----cc-----ccccccceeccc---chhccc----ccccccccc-ccc---ccCCCCCCCCCCCCh
Q 003743 455 HAAVGRYLHSDSS----FE-----KHIKPTLVRDDF---SQAMHE----FLPVAMRDI-TKT---SAEGGRSGWDDVGGL 514 (799)
Q Consensus 455 ~~a~~r~~~~~~~----~~-----~~~~~~l~~edf---~~al~~----~~p~~~~~~-~~~---~~~~~~~~~~~i~g~ 514 (799)
...-......... +. -..++-+..+|- ...+.+ ..+....+. ... ....-...+.++. .
T Consensus 1487 ~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~-~ 1565 (2695)
T 4akg_A 1487 TAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVN-K 1565 (2695)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECC-H
T ss_pred hcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecC-H
Confidence 4311110000000 00 000011111111 111111 000000000 000 0000011244443 3
Q ss_pred HHHHHHHHHHhhc---------------cCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 515 TDIQNAIKEMIEL---------------PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 515 ~~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
+++++.+.+.+.. .+.|-....+.-.+|++|+||+|++||||++++|..|..++..++.+..+.-
T Consensus 1566 ~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~ 1645 (2695)
T 4akg_A 1566 TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRH 1645 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTT
T ss_pred HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCC
Confidence 5555555555432 1112222233333678899999999999999999999999999999998765
Q ss_pred hhhhhcccHHHHHHHHHHhHh-cCCeEEEEcccc
Q 003743 580 LNKYIGASEQAVRDIFSKATA-AAPCLLFFDEFD 612 (799)
Q Consensus 580 ~~~~~g~se~~i~~~f~~a~~-~~p~ILfiDEid 612 (799)
++ ..+-...++.++..|.. +.|.|++|+|.+
T Consensus 1646 Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1646 SN--LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp CC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred CC--HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 43 33445789999999854 667788787764
No 69
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=2.1e-17 Score=180.18 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=160.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
+.+..|++++|.+.+++.+...+..... .-.+..++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-- 92 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-- 92 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--
Confidence 3456799999999999999887764311 112345899999999999999999999999999999997752
Q ss_pred hhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc----------------ccCcE
Q 003743 583 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGV 646 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~----------------~~~~v 646 (799)
....+...+... ..+++|||||||.+. ...++.|+..|+... ...++
T Consensus 93 ----~~~~~~~~~~~~--~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 ----KSGDLAAILTNL--SEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----SHHHHHHHHHTC--CTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----chhHHHHHHHhc--cCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 233445555432 456799999999984 345666776665422 01148
Q ss_pred EEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHH
Q 003743 647 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQL 725 (799)
Q Consensus 647 lvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~ 725 (799)
++|++||.+..+++++++ ||+..+.|++|+.+++..|++.++...+.. .+..++.|+..+.| +.+++.+++..+..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 899999999999999999 999999999999999999999988876543 33346667776554 45677777766554
Q ss_pred HHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC
Q 003743 726 SAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 760 (799)
Q Consensus 726 ~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~ 760 (799)
.+.. .....|+.+++..++.....
T Consensus 233 ~a~~-----------~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 233 FADV-----------NDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHH-----------TTCSEECHHHHHHHHHHHTC
T ss_pred HHHh-----------hcCCccCHHHHHHHHHHhCC
Confidence 4321 12346899999988876544
No 70
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.76 E-value=8.3e-18 Score=185.44 Aligned_cols=220 Identities=17% Similarity=0.179 Sum_probs=154.0
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
.|++++|.+..++.+...+..+.. +..+++++||+||||||||++|+++|+.++.. .+++.++|..
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~~~----------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~~~~ 107 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMIRE----------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIAGSE 107 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHT----------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEEGGG
T ss_pred chhhccChHHHHHHHHHHHHHHHc----------CCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCcccccchh
Confidence 388999999887765443332222 23456889999999999999999999999732 2455566544
Q ss_pred cccc-------------------------------------------------chhhHHHHHHHHHHHHHh-----c---
Q 003743 297 LSLE-------------------------------------------------KGPIIRQALSNFISEALD-----H--- 319 (799)
Q Consensus 297 l~~~-------------------------------------------------~~~~~~~~l~~~~~~a~~-----~--- 319 (799)
+... ..+.....++..+..+.. .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 108 IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccc
Confidence 2211 111112233333333321 1
Q ss_pred -CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEec-----------CCCCcc
Q 003743 320 -APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA-----------QSLEKI 387 (799)
Q Consensus 320 -~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~tt-----------n~~~~l 387 (799)
.|+||||||+|.+.. ...+.|+..++.... +++++++. |.+..+
T Consensus 188 ~~~~vl~IDEi~~l~~---------------~~~~~L~~~le~~~~---------~~~ii~t~~~~~~i~~t~~~~~~~l 243 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDI---------------ESFSFLNRALESDMA---------PVLIMATNRGITRIRGTSYQSPHGI 243 (368)
T ss_dssp -CBCEEEEESGGGSBH---------------HHHHHHHHHTTCTTC---------CEEEEEESCSEEECBTSSCEEETTC
T ss_pred ccCceEEEhhccccCh---------------HHHHHHHHHhhCcCC---------CeeeeecccceeeeeccCCCCcccC
Confidence 267999999999852 455566666544221 35555554 346789
Q ss_pred chhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCc
Q 003743 388 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 467 (799)
Q Consensus 388 d~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~ 467 (799)
++++++ ||.. +.|++|+.+++.+|++..+...+..+++++++.++..+.+.+++++.++++.|+..|..+
T Consensus 244 ~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------- 313 (368)
T 3uk6_A 244 PIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------- 313 (368)
T ss_dssp CHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-------
T ss_pred CHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-------
Confidence 999999 9975 899999999999999999998889999999999999998668999999999988777543
Q ss_pred ccccccccceecccchhcccc
Q 003743 468 FEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 468 ~~~~~~~~l~~edf~~al~~~ 488 (799)
....++.+++..++..+
T Consensus 314 ----~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 ----KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ----TCSSBCHHHHHHHHHHS
T ss_pred ----CCCCCCHHHHHHHHHHh
Confidence 22567788887776553
No 71
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=2.4e-19 Score=199.36 Aligned_cols=169 Identities=17% Similarity=0.219 Sum_probs=82.1
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCC-CCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh-hhhcc
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGA 586 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~-~~~g~ 586 (799)
..|+|++++++.+...+..+.+++..+..... .+++++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999999888765544444333322 24678999999999999999999999999999999999988 59995
Q ss_pred -cHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe-cCCCCccChhhcC
Q 003743 587 -SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA-TSRPDLLDAALLR 664 (799)
Q Consensus 587 -se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t-tn~~~~ld~al~r 664 (799)
.+..++.+|..+... +++||++.+... ......++++++|+.+||++.....+ +++ ||+|+.+|++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 789999999998774 358998887533 34556789999999999998766554 455 9999999999999
Q ss_pred CCCcceeeecCCCCHH-HHHHHH
Q 003743 665 PGRLDRLLFCDFPSPR-ERLDIL 686 (799)
Q Consensus 665 ~gRf~~~i~~~~p~~~-~r~~Il 686 (799)
|||||+.|++++|+.. .+.+|+
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------
T ss_pred CCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999987 677775
No 72
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.75 E-value=3.9e-18 Score=187.99 Aligned_cols=240 Identities=19% Similarity=0.255 Sum_probs=162.5
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHh--hCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh-hhhcc
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGA 586 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~-~~~g~ 586 (799)
.++|++.+++.+...+........... .....++.++||+||||||||++|+++|+.++.+|+.++++++.. .|+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 368999999999887753211111000 001125678999999999999999999999999999999999875 47887
Q ss_pred c-HHHHHHHHHHh----HhcCCeEEEEcccccccCCCCCCCC---chhhHHHHHHHhhccCcc-----------------
Q 003743 587 S-EQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVE----------------- 641 (799)
Q Consensus 587 s-e~~i~~~f~~a----~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~~~~ll~~ld~~~----------------- 641 (799)
. ...+..+|..+ ....|+||||||+|.+.+.+..... ....++++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 6 56677888776 4455789999999999877654321 122358999999998431
Q ss_pred --ccCcEEEEEecCCC----------Cc-----------------------------------cChhhcCCCCcceeeec
Q 003743 642 --VLTGVFVFAATSRP----------DL-----------------------------------LDAALLRPGRLDRLLFC 674 (799)
Q Consensus 642 --~~~~vlvi~ttn~~----------~~-----------------------------------ld~al~r~gRf~~~i~~ 674 (799)
..+++++|+++|.. .. ++|+|.. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 22345555555532 11 6788887 99999999
Q ss_pred CCCCHHHHHHHHHH----HH-------ccCCCCCccc---HHHHHH--HCCCCcHHHHHHHHHHHHHHHHHHHhcccCCC
Q 003743 675 DFPSPRERLDILKV----IS-------RKLPLADDVD---LEAIAH--MTEGFSGADLQALLSDAQLSAVHEILNNIDSN 738 (799)
Q Consensus 675 ~~p~~~~r~~Il~~----~~-------~~~~~~~~~~---~~~la~--~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 738 (799)
++|+.+++.+|++. ++ ......-.++ ++.|+. +...+.++++++++..+...++.+... .
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~----~ 329 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPS----M 329 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTT----C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccc----c
Confidence 99999999999975 22 1112221222 455554 334466789999998887777654322 1
Q ss_pred CCCCCCcccHHHHHHHH
Q 003743 739 EPGKMPVITDALLKSIA 755 (799)
Q Consensus 739 ~~~~~~~it~e~l~~a~ 755 (799)
+......|+.+++++.+
T Consensus 330 ~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 330 EDVEKVVIDESVIDGQS 346 (363)
T ss_dssp CCSEEEECHHHHTTCCS
T ss_pred cCCceeEEcHHHHhCcC
Confidence 11234578999887654
No 73
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.74 E-value=6.9e-17 Score=174.75 Aligned_cols=236 Identities=18% Similarity=0.254 Sum_probs=164.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 583 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~ 583 (799)
.+..|++++|.+..++.+...+.... .. -....++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAK-------AR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHH-------HH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHH-------cc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 44678999999999998888765321 00 123458999999999999999999999999999999877522
Q ss_pred hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc----------------ccCcEE
Q 003743 584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVF 647 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~----------------~~~~vl 647 (799)
...+...|..+ ...+++|||||+|.+. ......|+..++... ...++.
T Consensus 77 ----~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 77 ----PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ----HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ----hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 23344444331 2456799999999984 234455555554321 113578
Q ss_pred EEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 003743 648 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLS 726 (799)
Q Consensus 648 vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~ 726 (799)
+|++||.+..+++++.+ ||+.++.|++|+.+++.++++.++...+.. .+..++.|+..+.| ..+.+.++++.+...
T Consensus 141 ~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred EEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 99999999999999998 998899999999999999999988765543 33446778888865 456766666544322
Q ss_pred HHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhhc
Q 003743 727 AVHEILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFLD 779 (799)
Q Consensus 727 a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~---~~~~~~~~~~~~~~~~f~~ 779 (799)
+ .......|+.+++..++..... .....+...+......+..
T Consensus 218 a-----------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g 262 (324)
T 1hqc_A 218 A-----------QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGG 262 (324)
T ss_dssp S-----------TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCS
T ss_pred H-----------HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcC
Confidence 2 1123346899999888776542 3444555555555555543
No 74
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=1.5e-17 Score=175.73 Aligned_cols=163 Identities=23% Similarity=0.331 Sum_probs=123.6
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccH----HHHHHHHHHhHhcCCeEEEEcccccc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE----QAVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se----~~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
+..++.++||+||||||||++|+++|+.++.+++.+++++. +.|..+ ..++.+|..+....++||||||+|.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 34556789999999999999999999999999999998763 344333 56788899888788899999999999
Q ss_pred cCCCCCCCCchhhHHHHHHHhhccCcc-ccCcEEEEEecCCCCccCh-hhcCCCCcceeeecCCCCH-HHHHHHHHHHHc
Q 003743 615 APKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDA-ALLRPGRLDRLLFCDFPSP-RERLDILKVISR 691 (799)
Q Consensus 615 ~~~r~~~~~~~~~r~~~~ll~~ld~~~-~~~~vlvi~ttn~~~~ld~-al~r~gRf~~~i~~~~p~~-~~r~~Il~~~~~ 691 (799)
++.+..+ ......+++.|...+++.. ....++||+|||.++.+++ .+.+ ||+..+.+|+++. ++...++..
T Consensus 137 ~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~--- 210 (272)
T 1d2n_A 137 LDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL--- 210 (272)
T ss_dssp TTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---
T ss_pred hccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---
Confidence 7664322 2335667777777777654 3456889999999999988 5665 9999999987765 555555543
Q ss_pred cCCCCCcccHHHHHHHCCCC
Q 003743 692 KLPLADDVDLEAIAHMTEGF 711 (799)
Q Consensus 692 ~~~~~~~~~~~~la~~~~g~ 711 (799)
...+ .+.++..++..+.|+
T Consensus 211 ~~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 211 LGNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp HTCS-CHHHHHHHHHHHTTS
T ss_pred cCCC-CHHHHHHHHHHhcCC
Confidence 2233 455678888888886
No 75
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=2.9e-17 Score=184.94 Aligned_cols=234 Identities=21% Similarity=0.272 Sum_probs=155.7
Q ss_pred CCCCCCCCCChHHHH---HHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 504 GRSGWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.+..+++++|++.+. ..|...+... ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-- 85 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-- 85 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT--
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc--
Confidence 346789999999988 6666666531 1147999999999999999999999999999999744
Q ss_pred hhhhcccHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC-
Q 003743 581 NKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP- 655 (799)
Q Consensus 581 ~~~~g~se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~- 655 (799)
.....++.++..+.. ..+.||||||||.+... .++.|+..|+. ...++|.+||.++
T Consensus 86 -----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-----------~q~~LL~~le~---~~v~lI~att~n~~ 146 (447)
T 3pvs_A 86 -----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-----------QQDAFLPHIED---GTITFIGATTENPS 146 (447)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT---TSCEEEEEESSCGG
T ss_pred -----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-----------HHHHHHHHHhc---CceEEEecCCCCcc
Confidence 234556667766643 46789999999998533 33456666652 3334444454444
Q ss_pred CccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCC-------C-CCcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 003743 656 DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP-------L-ADDVDLEAIAHMTEGFSGADLQALLSDAQLSA 727 (799)
Q Consensus 656 ~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~-------~-~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a 727 (799)
..+++++++ |+. ++.|++|+.+++..|++.++.... + -.+..++.|+..+.| ..+.+.+++..+...+
T Consensus 147 ~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 147 FELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMA 222 (447)
T ss_dssp GSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHS
T ss_pred cccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc
Confidence 469999999 775 678999999999999999887521 1 122335666666553 3444444444333221
Q ss_pred HHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCchh
Q 003743 728 VHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVA 785 (799)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 785 (799)
.. ...+...||.+++.+++..... ..++....+++..+.|.++.++.+
T Consensus 223 --------~~-~~~~~~~It~e~v~~~l~~~~~-~~dk~gd~~yd~isal~ksirgsd 270 (447)
T 3pvs_A 223 --------EV-DDSGKRVLKPELLTEIAGERSA-RFDNKGDRFYDLISALHKSVRGSA 270 (447)
T ss_dssp --------CB-CTTSCEECCHHHHHHHHTCCCC-C---CCHHHHHHHHHHHHHHHTTC
T ss_pred --------cc-ccCCCCccCHHHHHHHHhhhhh-ccCCccchHHHHHHHHHHHHhCCC
Confidence 00 0113357999999999976544 344555567888888888766543
No 76
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.73 E-value=5.7e-17 Score=173.97 Aligned_cols=251 Identities=17% Similarity=0.188 Sum_probs=161.1
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhh-cCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFST-YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~-~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l 297 (799)
..++|.+.+++.+...+...+.... .... ..-..+.++||+||||||||++|+++|+.++ .+++.++|+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~------~~~~~i~~~~~ 86 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQ--LQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKF 86 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTS--SCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhh--hcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEcchhc
Confidence 3578999999888877754221110 0000 0113457899999999999999999999997 67888999887
Q ss_pred cc-cchh-hHHHHHHHHHHHH-----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-cCCc
Q 003743 298 SL-EKGP-IIRQALSNFISEA-----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSS 369 (799)
Q Consensus 298 ~~-~~~~-~~~~~l~~~~~~a-----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~-~~~~ 369 (799)
.. .+.+ .....+..++..+ ....++||||||+|.+.+... ..+.......+...|+..+++..-. ....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~---~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~ 163 (310)
T 1ofh_A 87 TEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE---YSGADVSREGVQRDLLPLVEGSTVSTKHGM 163 (310)
T ss_dssp SSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS---CCSSHHHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred ccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc---ccccchhHHHHHHHHHHHhcCCeEeccccc
Confidence 64 2222 1122344444322 112467999999999985332 1223333334567777877753210 0001
Q ss_pred cCCCCEEEEEe----cCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHH----H-------hh--hcccCCCHHHHH
Q 003743 370 CGIGPIAFVAS----AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH----E-------IQ--RRSLECSDEILL 432 (799)
Q Consensus 370 ~~~~~v~vI~t----tn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~----~-------l~--~~~~~~~~~~l~ 432 (799)
.....+++|++ ++.+..+++++.+ ||+..+.|++|+.+++.+|++. + +. ...+.+++++++
T Consensus 164 ~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVK 241 (310)
T ss_dssp EECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHH
T ss_pred ccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHH
Confidence 11234778887 4567889999999 9998899999999999999983 2 21 223468999999
Q ss_pred HHHhhcC-------CCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 433 DVASKCD-------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 433 ~la~~~~-------g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
.++..+. +.+++.+.++++.++..+..+.... ......++.+++..++..
T Consensus 242 ~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 242 KIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-----NGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC-----TTCEEEECHHHHHHHTCS
T ss_pred HHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccc-----cCCEEEEeeHHHHHHHHh
Confidence 9998873 4688999999988775543222110 111234677777766654
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=2.6e-17 Score=190.21 Aligned_cols=233 Identities=18% Similarity=0.289 Sum_probs=152.5
Q ss_pred cccccCchhHHHHHHHHHHh-hcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 218 VSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~-~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
..+++|++++++.+.+.+.. .+... + .+.++||+||||||||++++++|+.++ .++..++|+.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~---------~-~g~~vll~Gp~GtGKTtlar~ia~~l~------~~~~~i~~~~ 143 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS---------L-KGPILCLAGPPGVGKTSLAKSIAKSLG------RKFVRISLGG 143 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS---------C-CSCEEEEESSSSSSHHHHHHHHHHHHT------CEEEEECCCC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc---------C-CCCEEEEECCCCCCHHHHHHHHHHhcC------CCeEEEEecc
Confidence 35689999988888765522 22211 2 466899999999999999999999998 6778888766
Q ss_pred ccc---------cchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc-
Q 003743 297 LSL---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR- 366 (799)
Q Consensus 297 l~~---------~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~- 366 (799)
+.. .+.+...+.+...|..+....| ||||||+|.+.+.... ...+.|++.++......
T Consensus 144 ~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-----------~~~~~LL~~ld~~~~~~~ 211 (543)
T 3m6a_A 144 VRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-----------DPSSAMLEVLDPEQNSSF 211 (543)
T ss_dssp --------------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBC
T ss_pred cchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-----------CHHHHHHHHHhhhhccee
Confidence 432 2223344445556665543444 9999999999743211 12345555565433111
Q ss_pred -----CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----------cccCCCHHHH
Q 003743 367 -----KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEIL 431 (799)
Q Consensus 367 -----~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----------~~~~~~~~~l 431 (799)
........+++|+|||.++.++++|++ ||. .|.|+.|+.+++.+|++.++.. ..+.++++++
T Consensus 212 ~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l 288 (543)
T 3m6a_A 212 SDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAI 288 (543)
T ss_dssp CCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHH
T ss_pred ecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHH
Confidence 011112468999999999999999999 996 7999999999999999987632 2456789999
Q ss_pred HHHHhhcC-CCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcc
Q 003743 432 LDVASKCD-GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 486 (799)
Q Consensus 432 ~~la~~~~-g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~ 486 (799)
..++.... ..+.++|++.+..++..+..+.+.. ......++.+++..++.
T Consensus 289 ~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 289 LDIIRYYTREAGVRSLERQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHC
T ss_pred HHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhC
Confidence 99877444 4577888888877776665554322 12234577777776654
No 78
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=5.2e-17 Score=171.50 Aligned_cols=207 Identities=15% Similarity=0.223 Sum_probs=140.7
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc-c
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-L 297 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~-l 297 (799)
..+++.....+.++.....+.. .....+.+.+.++||+||||||||++|+++|+.++ .+++.++|++ +
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~-----~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~------~~~~~i~~~~~~ 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQ-----QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN------FPFIKICSPDKM 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHH-----HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT------CSEEEEECGGGC
T ss_pred cCCCCccHHHHHHHHHHHHHHH-----HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeCHHHh
Confidence 4567777777777765322211 11222345678999999999999999999999987 6777787764 3
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEE
Q 003743 298 SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 377 (799)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~v 377 (799)
.+.........+..+|..+....+++|||||+|.+++.+.... .....+++.|...++..... ..++++
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~l~~L~~~~~~~~~~------~~~~~i 170 (272)
T 1d2n_A 102 IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-----RFSNLVLQALLVLLKKAPPQ------GRKLLI 170 (272)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-----BCCHHHHHHHHHHTTCCCST------TCEEEE
T ss_pred cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-----hHHHHHHHHHHHHhcCccCC------CCCEEE
Confidence 3433344446677888887767789999999999975332111 11225566666655543211 125889
Q ss_pred EEecCCCCccch-hhhccCceeEEEeccCCCH-HHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCC----ChhhHHHHHH
Q 003743 378 VASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSLECSDEILLDVASKCDGY----DAYDLEILVD 451 (799)
Q Consensus 378 I~ttn~~~~ld~-aL~r~gRf~~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~----s~~dl~~lv~ 451 (799)
|+|||.++.+++ .+.+ ||...+.+|+++. +++..++.. . ..++++.+..++..+.|+ +.+++.++++
T Consensus 171 i~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---L--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 999999988887 5666 9998899987776 555555543 2 245788899999999987 5566666655
Q ss_pred HHH
Q 003743 452 RTV 454 (799)
Q Consensus 452 ~A~ 454 (799)
.+.
T Consensus 244 ~a~ 246 (272)
T 1d2n_A 244 MSL 246 (272)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
No 79
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.72 E-value=5.4e-17 Score=178.77 Aligned_cols=234 Identities=18% Similarity=0.144 Sum_probs=155.2
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 299 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~ 299 (799)
.|+|.+.+++.+...+..................++.++||+||||||||++|+++|+.++ .+++.++|+.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~------~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD------VPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEechHHhcc
Confidence 3688998888888777432210000000011123567899999999999999999999998 7899999988764
Q ss_pred c-chhhH-HHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----cc---
Q 003743 300 E-KGPII-RQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KR--- 366 (799)
Q Consensus 300 ~-~~~~~-~~~l~~~~~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~----~~--- 366 (799)
. +.|.. ...+..++..+ ....++||||||+|.+.+.+.... .+.......+...|+..+++... ..
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~-~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS-ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC-----------
T ss_pred cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc-cccccchHHHHHHHHHHhcCceeeccCccccc
Confidence 3 33332 34455565554 334578999999999986543322 12222233478888888883210 00
Q ss_pred -----CCccCCCCEEEEEecCCC----------Cc-----------------------------------cchhhhccCc
Q 003743 367 -----KSSCGIGPIAFVASAQSL----------EK-----------------------------------IPQSLTSSGR 396 (799)
Q Consensus 367 -----~~~~~~~~v~vI~ttn~~----------~~-----------------------------------ld~aL~r~gR 396 (799)
.......++++|+++|.. .. +.|+|.+ |
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R 246 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--R 246 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--T
T ss_pred cCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--c
Confidence 012223456666666642 11 5788887 9
Q ss_pred eeEEEeccCCCHHHHHHHHHH----Hhh---------hcccCCCHHHHHHHHhh--cCCCChhhHHHHHHHHHHHHhccc
Q 003743 397 FDFHVQLPAPAASERKAILEH----EIQ---------RRSLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 461 (799)
Q Consensus 397 f~~~i~~~~p~~~er~~Il~~----~l~---------~~~~~~~~~~l~~la~~--~~g~s~~dl~~lv~~A~~~a~~r~ 461 (799)
|+..+.|++|+.+++.+|+.. ++. ...+.+++++++.+++. ...++.++|++++++++..++.+.
T Consensus 247 ~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 247 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999875 221 22356799999999964 456678999999999998887765
Q ss_pred c
Q 003743 462 L 462 (799)
Q Consensus 462 ~ 462 (799)
.
T Consensus 327 ~ 327 (363)
T 3hws_A 327 P 327 (363)
T ss_dssp T
T ss_pred c
Confidence 3
No 80
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.71 E-value=8.8e-17 Score=181.26 Aligned_cols=217 Identities=13% Similarity=0.177 Sum_probs=138.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
..+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|.......|+||||||++.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4589999999999999999999988 88999999988765554332222122333333336789999999998642
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc---cChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHcc
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
......|+..++.....+..+|++|.+.+.. +++++++ ||. ..+.+++|+.++|.+|++..+..
T Consensus 210 ---------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 ---------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1344455555544334455666666666665 8899998 886 78899999999999999988764
Q ss_pred CC--CCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCC-----CC-H
Q 003743 693 LP--LADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPS-----VS-E 764 (799)
Q Consensus 693 ~~--~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~-----~~-~ 764 (799)
.+ ++.++ ++.|+..+.| +.+++.++++.+...|... ...||.+++.+++....+. ++ .
T Consensus 279 ~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a~~~------------~~~It~~~~~~~l~~~~~~~~~~~i~~~ 344 (440)
T 2z4s_A 279 EHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYKETT------------GKEVDLKEAILLLKDFIKPNRVKAMDPI 344 (440)
T ss_dssp HTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHHHHS------------SSCCCHHHHHHHTSTTTCC---------
T ss_pred cCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHhhccccccCChH
Confidence 43 43433 7888888874 7788888887776555311 1259999999999876521 22 1
Q ss_pred ----HHHHHHHHHHHHhhcCCCch
Q 003743 765 ----AEKLRLYSIYGQFLDSKKSV 784 (799)
Q Consensus 765 ----~~~~~~~~~~~~f~~~~~~~ 784 (799)
+....+|++...+.+|.+..
T Consensus 345 ~~i~~~v~~~y~i~~~~~~s~~r~ 368 (440)
T 2z4s_A 345 DELIEIVAKVTGVPREEILSNSRN 368 (440)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHhCCCHHHhcCccCC
Confidence 23567888888888877653
No 81
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.8e-17 Score=174.70 Aligned_cols=198 Identities=8% Similarity=0.057 Sum_probs=135.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEeccchhhh----------h------hcccHHHHHHHH
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELLNK----------Y------IGASEQAVRDIF 595 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~~~~l~~~----------~------~g~se~~i~~~f 595 (799)
.+.+++|+||||||||++++++++++ ...++++||..+.+. . .|.+...+..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 45689999999999999999999988 467899998775432 2 233566788888
Q ss_pred HHh--HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc----cChhhcCCCCcc
Q 003743 596 SKA--TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL----LDAALLRPGRLD 669 (799)
Q Consensus 596 ~~a--~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~----ld~al~r~gRf~ 669 (799)
... ....++||||||+|.+. ...++..|+.+.. ....+++||+++|..+. +++++++ ||.
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~ 189 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL----------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAH 189 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC----------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTT
T ss_pred HHhhhccCCceEEEEecHHHhh----------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCC
Confidence 875 45668899999999996 1356666665443 24567899999998865 5666677 886
Q ss_pred -eeeecCCCCHHHHHHHHHHHHccCCCC------------------------------------CcccHHHHHHHCCCCc
Q 003743 670 -RLLFCDFPSPRERLDILKVISRKLPLA------------------------------------DDVDLEAIAHMTEGFS 712 (799)
Q Consensus 670 -~~i~~~~p~~~~r~~Il~~~~~~~~~~------------------------------------~~~~~~~la~~~~g~s 712 (799)
..|.|++|+.++..+|++.+++...-. .+-.++.+|+... ..
T Consensus 190 ~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA-~~ 268 (318)
T 3te6_A 190 FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVA-NV 268 (318)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHH-HH
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHH-hh
Confidence 689999999999999999888753210 1222444555332 23
Q ss_pred HHHHHH---HHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 713 GADLQA---LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 713 g~di~~---~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
.+|++. +|+.|...|-++....... ..+...||.+++..+..
T Consensus 269 ~GD~R~Al~ilr~A~~~ae~e~~~k~~~--~~~~~~i~~~~~~~~~~ 313 (318)
T 3te6_A 269 SGSTEKAFKICEAAVEISKKDFVRKGGL--QKGKLVVSQEMVPRYFS 313 (318)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHTTE--ETTEECCSEECCTHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCC--CCCcEEeeHHHHHHHHH
Confidence 456664 4777777776655443221 13445666665554443
No 82
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=3.9e-16 Score=168.76 Aligned_cols=201 Identities=15% Similarity=0.208 Sum_probs=148.5
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+..|++++|.+..+..+.+.+..+... -..+.++||+||||||||++|+++++.++ .+++.++
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~----------~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~ 70 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR----------KEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTS 70 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH----------CSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEEC
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc----------CCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEe
Confidence 4557899999999888888776544210 12356799999999999999999999997 6778888
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----cCC
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----RKS 368 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~-----~~~ 368 (799)
|+.+.. .+ .+...+... ...+++|||||+|.+.. .....|+..++...-. ...
T Consensus 71 ~~~~~~--~~----~l~~~l~~~-~~~~~~l~lDEi~~l~~---------------~~~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 71 GPAIEK--PG----DLAAILANS-LEEGDILFIDEIHRLSR---------------QAEEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp TTTCCS--HH----HHHHHHTTT-CCTTCEEEETTTTSCCH---------------HHHHHHHHHHHHSEEEECCSSSSS
T ss_pred ccccCC--hH----HHHHHHHHh-ccCCCEEEEECCccccc---------------chHHHHHHHHHhhhhHHhcccccc
Confidence 877643 11 122222221 14678999999998852 3445566666654210 000
Q ss_pred ----ccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChh
Q 003743 369 ----SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 444 (799)
Q Consensus 369 ----~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~ 444 (799)
.....++.+|++||.+..++++|.+ ||...+.+++|+.+++..++..++...+..++++.++.++..+.| +++
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r 205 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMR 205 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHH
T ss_pred ccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHH
Confidence 0011247899999999999999998 998799999999999999999999888888999999999999865 678
Q ss_pred hHHHHHHHHHH
Q 003743 445 DLEILVDRTVH 455 (799)
Q Consensus 445 dl~~lv~~A~~ 455 (799)
++.++++.+..
T Consensus 206 ~l~~~l~~~~~ 216 (324)
T 1hqc_A 206 VAKRLFRRVRD 216 (324)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 88888776653
No 83
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.69 E-value=7.2e-16 Score=165.71 Aligned_cols=216 Identities=15% Similarity=0.200 Sum_probs=151.0
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
..++|.+.+++.+...+......- ...-.+..++||+||||||||++|+++|+.+.... .+++.++|+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~------~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~ 87 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL------KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYM 87 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC------SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC------CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeeccccc
Confidence 456788888888888775432100 00012345799999999999999999999985322 457888888765
Q ss_pred ccchhhHHHHH------------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 299 LEKGPIIRQAL------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 299 ~~~~~~~~~~l------------~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
..... ...+ ..+........++||||||+|.+.+ .....|+..++...-..
T Consensus 88 ~~~~~--~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~ 150 (311)
T 4fcw_A 88 EKHAV--SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTD 150 (311)
T ss_dssp STTHH--HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEC
T ss_pred ccccH--HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEc
Confidence 43210 0000 1122222234568999999999852 46677777777643211
Q ss_pred --CCccCCCCEEEEEecCC--------------------------CCccchhhhccCceeEEEeccCCCHHHHHHHHHHH
Q 003743 367 --KSSCGIGPIAFVASAQS--------------------------LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 418 (799)
Q Consensus 367 --~~~~~~~~v~vI~ttn~--------------------------~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~ 418 (799)
.......++++|+|||. ...++++|.+ ||+..+.+++|+.+++..|++.+
T Consensus 151 ~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 151 SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 11122235789999998 4467888888 99989999999999999999988
Q ss_pred hhh---------cccCCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhcccc
Q 003743 419 IQR---------RSLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 462 (799)
Q Consensus 419 l~~---------~~~~~~~~~l~~la~~~~--g~s~~dl~~lv~~A~~~a~~r~~ 462 (799)
+.. ....+++++++.++.... ..+.++|++++++++..++.+.+
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 229 MSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp THHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 764 245689999999999876 67899999999999887776654
No 84
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.69 E-value=1.1e-16 Score=177.07 Aligned_cols=240 Identities=20% Similarity=0.226 Sum_probs=150.0
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHh-----------------hCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEE
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFA-----------------QAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI 572 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i 572 (799)
.++|++++++.|...+..+........ .....+..++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 578999999999887743221111100 011234568999999999999999999999999999
Q ss_pred EEeccchh-hhhhccc-HHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCC---CchhhHHHHHHHhhccCcc--
Q 003743 573 SVKGPELL-NKYIGAS-EQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVE-- 641 (799)
Q Consensus 573 ~i~~~~l~-~~~~g~s-e~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~~~~ll~~ld~~~-- 641 (799)
.+++..+. ..|.|.. +..+..++..+. ...++||||||+|.+...+.... ......+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 4566654 455666666542 34568999999999987643321 1112348889999888531
Q ss_pred -----------------ccCcEEEEEecCCC-----------------------------------------CccChhhc
Q 003743 642 -----------------VLTGVFVFAATSRP-----------------------------------------DLLDAALL 663 (799)
Q Consensus 642 -----------------~~~~vlvi~ttn~~-----------------------------------------~~ld~al~ 663 (799)
..+++++|++||.. ..+.|++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456777777620 12456677
Q ss_pred CCCCcceeeecCCCCHHHHHHHHHH----HHc-------cCCCC---CcccHHHHHHHCC--CCcHHHHHHHHHHHHHHH
Q 003743 664 RPGRLDRLLFCDFPSPRERLDILKV----ISR-------KLPLA---DDVDLEAIAHMTE--GFSGADLQALLSDAQLSA 727 (799)
Q Consensus 664 r~gRf~~~i~~~~p~~~~r~~Il~~----~~~-------~~~~~---~~~~~~~la~~~~--g~sg~di~~~~~~a~~~a 727 (799)
+ ||+.++.|++++.++...|++. +++ ..+.. .+..++.|+.... ....+.+++++..+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 8988999999999999999962 111 11111 1222455555532 245788888888887777
Q ss_pred HHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 728 VHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
+.+.... ......||.+++.++..
T Consensus 340 ~~~~~~~-----~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 340 MFDLPKL-----KGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHTGGGG-----TTSEEEECHHHHTTSSC
T ss_pred HhhccCC-----CCCEEEEeHHHhcCCCC
Confidence 6654431 12345799999977554
No 85
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.68 E-value=5.1e-16 Score=168.16 Aligned_cols=216 Identities=16% Similarity=0.257 Sum_probs=144.1
Q ss_pred CCCCCCC-C--hHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccch
Q 003743 506 SGWDDVG-G--LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 579 (799)
Q Consensus 506 ~~~~~i~-g--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l 579 (799)
..|++++ | .......+...+..+. ....+++|+||||||||++|+++++.+ +.+++.+++.++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4566664 3 4444455555544321 234589999999999999999999988 899999999988
Q ss_pred hhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCC---
Q 003743 580 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD--- 656 (799)
Q Consensus 580 ~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~--- 656 (799)
...+.+.........|.... ..++||||||++.+..+ ......++..++.....+..+|+++++.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 77 AQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC---------hHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 76655443332223333332 24789999999998642 123444555544333445577777777776
Q ss_pred ccChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHH---HHHH
Q 003743 657 LLDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLS---AVHE 730 (799)
Q Consensus 657 ~ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~---a~~~ 730 (799)
.+++++.+ ||. ..+.|++ +.+++.+|++..+...++. ++..++.|+..+ | ..+++.+++..+... ++.
T Consensus 147 ~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~~l~- 220 (324)
T 1l8q_A 147 GVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFEGLE- 220 (324)
T ss_dssp TSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHHHHH-
T ss_pred HhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHHHhc-
Confidence 58999998 886 6789999 9999999999988765543 333467788887 4 566777776665544 111
Q ss_pred HhcccCCCCCCCCCcc-cHHHHHHHHhh
Q 003743 731 ILNNIDSNEPGKMPVI-TDALLKSIASK 757 (799)
Q Consensus 731 ~~~~~~~~~~~~~~~i-t~e~l~~a~~~ 757 (799)
. .....| |.+++.+++..
T Consensus 221 -~--------~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 221 -R--------KERKERDKLMQIVEFVAN 239 (324)
T ss_dssp -H--------HHHHHHHHHHHHHHHHHH
T ss_pred -c--------ccccCCCCHHHHHHHHHH
Confidence 0 011357 88888887753
No 86
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=1e-15 Score=165.77 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=139.3
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....+.+|++++|.+..++.+.+.+.. -..+..+|++||||||||++++++|+.++ .
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~--------------~~~~~~~L~~G~~G~GKT~la~~la~~l~------~ 74 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSK--------------GKIPHIILHSPSPGTGKTTVAKALCHDVN------A 74 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT--------------TCCCSEEEECSSTTSSHHHHHHHHHHHTT------E
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------C
Confidence 355555678899999999888777776541 12345688899999999999999999998 8
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHHHHhc-----CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISEALDH-----APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 362 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~-----~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~ 362 (799)
.+++++++... .. .++..+...... .+.||||||+|.+.+ ......|+..++..
T Consensus 75 ~~~~i~~~~~~---~~----~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------~~~~~~L~~~le~~ 133 (324)
T 3u61_B 75 DMMFVNGSDCK---ID----FVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------AESQRHLRSFMEAY 133 (324)
T ss_dssp EEEEEETTTCC---HH----HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------HHHHHHHHHHHHHH
T ss_pred CEEEEcccccC---HH----HHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------HHHHHHHHHHHHhC
Confidence 88999987743 22 233333332222 567999999999851 13455666767665
Q ss_pred ccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHH-------HhhhcccCCCH-HHHHHH
Q 003743 363 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH-------EIQRRSLECSD-EILLDV 434 (799)
Q Consensus 363 ~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~-------~l~~~~~~~~~-~~l~~l 434 (799)
.. .+.+|++||.+..+++++++ |+. .+.|++|+.+++.+|+.. .+...++.+++ ++++.+
T Consensus 134 ~~---------~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l 201 (324)
T 3u61_B 134 SS---------NCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAAL 201 (324)
T ss_dssp GG---------GCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHH
T ss_pred CC---------CcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 43 37888899999999999999 886 799999999987665543 34566788888 999999
Q ss_pred HhhcCCCChhhHHHHHHHH
Q 003743 435 ASKCDGYDAYDLEILVDRT 453 (799)
Q Consensus 435 a~~~~g~s~~dl~~lv~~A 453 (799)
+..+.| +.+++.+.++.+
T Consensus 202 ~~~~~g-d~R~a~~~L~~~ 219 (324)
T 3u61_B 202 VKKNFP-DFRKTIGELDSY 219 (324)
T ss_dssp HHHTCS-CTTHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHH
Confidence 998766 445554544443
No 87
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.68 E-value=2e-15 Score=152.85 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=139.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccc
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPE 578 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~ 578 (799)
.+..|.+++|.+...+.+...+... ...+++|+||||||||++++++++.+ ...++.+++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 3466888999999999998877631 12359999999999999999999875 45688888765
Q ss_pred hhhhhhcccHHHHHHHHHHhH------hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEec
Q 003743 579 LLNKYIGASEQAVRDIFSKAT------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 652 (799)
Q Consensus 579 l~~~~~g~se~~i~~~f~~a~------~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~tt 652 (799)
..+ ...+...+.... ...+.||||||+|.+.+ ...+.|+..++. ...++.+|++|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~--~~~~~~~i~~~ 139 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEM--YSKSCRFILSC 139 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHH--TTTTEEEEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHh--cCCCCeEEEEe
Confidence 432 122222222221 25678999999999842 345566666653 24567788889
Q ss_pred CCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHH
Q 003743 653 SRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEI 731 (799)
Q Consensus 653 n~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~ 731 (799)
|.+..+++++.+ |+. .+.|++|+.+++.++++.++...+.. .+...+.++..+.| ..+.+.+++..++..+
T Consensus 140 ~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~---- 211 (226)
T 2chg_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG---- 211 (226)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC----
T ss_pred CChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC----
Confidence 999999999999 887 88999999999999999887654433 23345666666653 3333333333222111
Q ss_pred hcccCCCCCCCCCcccHHHHHHHHh
Q 003743 732 LNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 732 ~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
..||.+++++++.
T Consensus 212 ------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ------------EVVDADTIYQITA 224 (226)
T ss_dssp ------------SCBCHHHHHHHHH
T ss_pred ------------ceecHHHHHHHhc
Confidence 3799999999875
No 88
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.67 E-value=2.4e-15 Score=152.24 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=141.5
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeE
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAH 288 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~ 288 (799)
|.....+..+.+++|.+..++.+.+.+.. ..+.+++|+||||||||++++++++.+..... ...
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~---------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~ 70 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER---------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDN 70 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHT---------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG-GGG
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc-ccc
Confidence 33344567789999999888877765532 12335999999999999999999998753221 134
Q ss_pred EEEEecccccccchhhHHHHHHHHHHH--HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 289 IVFVCCSRLSLEKGPIIRQALSNFISE--ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 289 ~~~v~~s~l~~~~~~~~~~~l~~~~~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
++.++++..... ......+...... .....+.+|+|||+|.+.. .....|...++....
T Consensus 71 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~~l~~~~~-- 131 (226)
T 2chg_A 71 FIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMYSK-- 131 (226)
T ss_dssp EEEEETTCTTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------HHHHHHHHHHHHTTT--
T ss_pred eEEeccccccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------HHHHHHHHHHHhcCC--
Confidence 666777654321 1222222222111 0124678999999999852 234455666655322
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhH
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL 446 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl 446 (799)
.+.+|+++|.+..+++++.+ |+. .+.+++|+.+++.+++...+...+..++++.++.++..+.| +++.+
T Consensus 132 -------~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l 200 (226)
T 2chg_A 132 -------SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKA 200 (226)
T ss_dssp -------TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHH
T ss_pred -------CCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 37888889999999999999 887 89999999999999999999888888999999999988766 66666
Q ss_pred HHHHHHHH
Q 003743 447 EILVDRTV 454 (799)
Q Consensus 447 ~~lv~~A~ 454 (799)
.++++.++
T Consensus 201 ~~~l~~~~ 208 (226)
T 2chg_A 201 INALQGAA 208 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.67 E-value=9.6e-15 Score=191.72 Aligned_cols=138 Identities=17% Similarity=0.322 Sum_probs=96.8
Q ss_pred CCceeeecCCCCcHHHHH-HHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHh----H-----------hcCCeEE
Q 003743 543 RSNVLLYGPPGCGKTHIV-GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA----T-----------AAAPCLL 606 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la-~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a----~-----------~~~p~IL 606 (799)
+.++||+||||||||++| ++++...+..++.++.+...+ ...+...++.. + .+.++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 458999999999999999 555555578888888876432 23444444432 0 2345799
Q ss_pred EEcccccccCCCCCCCCchhhHHHHHHHhhccCccc--------cCcEEEEEecCCCC-----ccChhhcCCCCcceeee
Q 003743 607 FFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--------LTGVFVFAATSRPD-----LLDAALLRPGRLDRLLF 673 (799)
Q Consensus 607 fiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~--------~~~vlvi~ttn~~~-----~ld~al~r~gRf~~~i~ 673 (799)
||||++.....+ .......+++.+++. ..++.. ..++.+|||||.|. .++++++| || .+++
T Consensus 1341 FiDEinmp~~d~--yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1341 FCDEINLPKLDK--YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEETTTCSCCCS--SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred Eecccccccccc--cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 999999743332 222334455555542 222211 13589999999995 69999999 89 7899
Q ss_pred cCCCCHHHHHHHHHHHHcc
Q 003743 674 CDFPSPRERLDILKVISRK 692 (799)
Q Consensus 674 ~~~p~~~~r~~Il~~~~~~ 692 (799)
++.|+.+++..|+..+++.
T Consensus 1415 i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 90
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.66 E-value=9.8e-16 Score=172.69 Aligned_cols=198 Identities=17% Similarity=0.249 Sum_probs=134.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
+.+++||||||||||+|++++++.+..... ...++++++..+...............|.......++||||||+|.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCC-SSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 567999999999999999999999842210 1567788887753322222211111122222222688999999999862
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCc---cchhhhccCcee--EEEeccCCCHH
Q 003743 335 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 409 (799)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf~--~~i~~~~p~~~ 409 (799)
. . .....+...++..... +..+||++.+.+.. +++++++ ||. ..+.+++|+.+
T Consensus 209 ~---------~----~~q~~l~~~l~~l~~~-------~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 209 K---------T----GVQTELFHTFNELHDS-------GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEE 266 (440)
T ss_dssp C---------H----HHHHHHHHHHHHHHTT-------TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHH
T ss_pred C---------h----HHHHHHHHHHHHHHHC-------CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHH
Confidence 1 0 1222333344333222 12566666665554 7899999 775 68999999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 410 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 410 er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
++.+|++..+...++.+++++++.++..+.| +.+++..++..+...+... . ..++.+++..++...
T Consensus 267 ~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~-----------~-~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT-----------G-KEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS-----------S-SCCCHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-----------C-CCCCHHHHHHHHHHH
Confidence 9999999999888888999999999998875 8899999998887655321 1 236677777666554
No 91
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.65 E-value=1.8e-15 Score=155.62 Aligned_cols=196 Identities=17% Similarity=0.202 Sum_probs=133.7
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+.+|+++++.. ..+.+++.+..++. .+.+++++|+||||||||++++++++.+.... ..+.++++
T Consensus 24 ~~~~~~~~~~~-~~~~~~~~l~~~~~-----------~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~---~~~~~~~~ 88 (242)
T 3bos_A 24 DETFTSYYPAA-GNDELIGALKSAAS-----------GDGVQAIYLWGPVKSGRTHLIHAACARANELE---RRSFYIPL 88 (242)
T ss_dssp TCSTTTSCC---CCHHHHHHHHHHHH-----------TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred CCChhhccCCC-CCHHHHHHHHHHHh-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEH
Confidence 35678887722 12334455544432 12467899999999999999999999987442 45677888
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743 295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 374 (799)
Q Consensus 295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~ 374 (799)
..+....... +... ..+.+|+|||+|.+... . .....|...++...... .
T Consensus 89 ~~~~~~~~~~--------~~~~--~~~~vliiDe~~~~~~~---------~----~~~~~l~~~l~~~~~~~-------~ 138 (242)
T 3bos_A 89 GIHASISTAL--------LEGL--EQFDLICIDDVDAVAGH---------P----LWEEAIFDLYNRVAEQK-------R 138 (242)
T ss_dssp GGGGGSCGGG--------GTTG--GGSSEEEEETGGGGTTC---------H----HHHHHHHHHHHHHHHHC-------S
T ss_pred HHHHHHHHHH--------HHhc--cCCCEEEEeccccccCC---------H----HHHHHHHHHHHHHHHcC-------C
Confidence 7765433211 1111 45789999999998521 0 11233444444433221 1
Q ss_pred E-EEEEecCCCC---ccchhhhccCcee--EEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHH
Q 003743 375 I-AFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 448 (799)
Q Consensus 375 v-~vI~ttn~~~---~ld~aL~r~gRf~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~ 448 (799)
+ +|++++..+. .+++++.+ ||. ..+.+++|+.+++.+++..++...+..+++++++.++..+.| +.+++.+
T Consensus 139 ~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~ 215 (242)
T 3bos_A 139 GSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFD 215 (242)
T ss_dssp CEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHH
T ss_pred CeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHH
Confidence 3 4555444443 45688888 774 789999999999999999999988889999999999998866 7888888
Q ss_pred HHHHHHHHHh
Q 003743 449 LVDRTVHAAV 458 (799)
Q Consensus 449 lv~~A~~~a~ 458 (799)
+++.++..+.
T Consensus 216 ~l~~~~~~a~ 225 (242)
T 3bos_A 216 VLDRLDKASM 225 (242)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888876653
No 92
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=3.2e-16 Score=154.89 Aligned_cols=158 Identities=26% Similarity=0.364 Sum_probs=116.1
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..++++.|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4678899999888888776543 224579999999999999999999985 78999999
Q ss_pred ccchh--hhhhcccHHHHHHHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEec
Q 003743 576 GPELL--NKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 652 (799)
Q Consensus 576 ~~~l~--~~~~g~se~~i~~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~tt 652 (799)
+.++. ..+.|.....+..++..+. ...|+||||||+|.+.+.+...... .+.+.+...++ ..++.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~~----~~~~~~i~~~ 158 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALA----RGELHCVGAT 158 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHH----TTSCCEEEEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhhc----cCCeEEEEeC
Confidence 98876 3455666677888887664 4568899999999997654221111 12223333332 3457778888
Q ss_pred CCCC-----ccChhhcCCCCcceeeecCCCCHHHHHHHH
Q 003743 653 SRPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDIL 686 (799)
Q Consensus 653 n~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il 686 (799)
|.+. .+++++.+ ||. .++|++|+.+++.+|+
T Consensus 159 ~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8876 68999999 998 5899999999998875
No 93
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=5.2e-16 Score=178.73 Aligned_cols=203 Identities=16% Similarity=0.174 Sum_probs=132.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCC-ChhHHhhCCC---CCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccc
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSK-FPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 578 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~-~~~~~~~~~~---~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~ 578 (799)
+.+..|++++|.+.+++.+..++..... .+..+...+. .+..++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4557899999999999999988764211 1112222222 24578999999999999999999999999999999998
Q ss_pred hhhhhhcccHH-------HHHHHHHHh-----HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcE
Q 003743 579 LLNKYIGASEQ-------AVRDIFSKA-----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV 646 (799)
Q Consensus 579 l~~~~~g~se~-------~i~~~f~~a-----~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~v 646 (799)
+.+.+.....- .+..+|..+ ....++||||||+|.+.... ...++.|+..++. ...++
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHH--CSSCE
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHh--cCCCE
Confidence 75543221100 022233322 23567899999999997542 1234555555542 23345
Q ss_pred EEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC--CCCCcccHHHHHHHCCCCcHHHHHHHHHHHH
Q 003743 647 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL--PLADDVDLEAIAHMTEGFSGADLQALLSDAQ 724 (799)
Q Consensus 647 lvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~--~~~~~~~~~~la~~~~g~sg~di~~~~~~a~ 724 (799)
++++++.....+. .+. |+...+.|++|+.+++.++++..+... .++++ .++.|+..+. +|++.+++...
T Consensus 183 Ili~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~----GdiR~~i~~L~ 253 (516)
T 1sxj_A 183 ILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTR----GDIRQVINLLS 253 (516)
T ss_dssp EEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTT----TCHHHHHHHHT
T ss_pred EEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC----CcHHHHHHHHH
Confidence 5555544434444 344 445689999999999999998876543 33333 3777777765 56666665443
No 94
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.65 E-value=4.5e-15 Score=163.99 Aligned_cols=221 Identities=17% Similarity=0.121 Sum_probs=150.6
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---------CCeEEEEeccc
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 578 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---------~~~~i~i~~~~ 578 (799)
.+++.|.+...+.+...+..... ...+.+++|+||||||||++++++++.+ +.+++.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 36789999988888876653211 1234589999999999999999999988 88999999876
Q ss_pred hhhhh----------------hcccHHH-HHHHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCc
Q 003743 579 LLNKY----------------IGASEQA-VRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV 640 (799)
Q Consensus 579 l~~~~----------------~g~se~~-i~~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~ 640 (799)
..+.+ .|.+... +..++.... .+.|+||||||+|.+...+ ....++..++..++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhc
Confidence 43211 1222333 444444443 3458899999999996432 1235566666655433
Q ss_pred cccCcEEEEEecCCC---CccChhhcCCCCcce-eeecCCCCHHHHHHHHHHHHcc----CCCCCcccHHHHHHHCC---
Q 003743 641 EVLTGVFVFAATSRP---DLLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRK----LPLADDVDLEAIAHMTE--- 709 (799)
Q Consensus 641 ~~~~~vlvi~ttn~~---~~ld~al~r~gRf~~-~i~~~~p~~~~r~~Il~~~~~~----~~~~~~~~~~~la~~~~--- 709 (799)
....++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|++.++.. ..+ .+...+.++..+.
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAAREH 239 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSSS
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhc
Confidence 214567888889887 668999998 8875 8999999999999999988764 222 2333667777765
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 710 GFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 710 g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
| ..+.+.++|+.|...|... +...|+.+++..++...
T Consensus 240 G-~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 240 G-DARRALDLLRVAGEIAERR-----------REERVRREHVYSARAEI 276 (387)
T ss_dssp C-CHHHHHHHHHHHHHHHHHT-----------TCSCBCHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 4 3455666777766554321 23579999999888765
No 95
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.64 E-value=2e-15 Score=163.42 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=130.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhh
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 582 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~ 582 (799)
+.+..|++++|.+++++.+...+... ..+..+|++||||||||++|+++|+.++.+++.+++++.
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~--- 84 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC--- 84 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC---
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc---
Confidence 34577999999999999998887621 223457888999999999999999999999999998773
Q ss_pred hhcccHHHHHHHHHHhHhc-----CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCc
Q 003743 583 YIGASEQAVRDIFSKATAA-----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 657 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~-----~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ 657 (799)
+ ...++..+...... .+.||||||+|.+.+ ....+.|+..++. ....+.+|++||.+..
T Consensus 85 --~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~--~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 85 --K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEA--YSSNCSIIITANNIDG 148 (324)
T ss_dssp --C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHH--HGGGCEEEEEESSGGG
T ss_pred --C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHh--CCCCcEEEEEeCCccc
Confidence 2 34555555543332 568999999999841 3456677777763 2355778889999999
Q ss_pred cChhhcCCCCcceeeecCCCCHHHHHHHHHHHH-------ccCCCC-Cc-ccHHHHHHHCCCCcHHHHHHHHH
Q 003743 658 LDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-------RKLPLA-DD-VDLEAIAHMTEGFSGADLQALLS 721 (799)
Q Consensus 658 ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~-------~~~~~~-~~-~~~~~la~~~~g~sg~di~~~~~ 721 (799)
+++++++ ||. ++.|++|+.+++.+|++.+. ...++. .+ ..++.++..+. +|++.+++
T Consensus 149 l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~----gd~R~a~~ 214 (324)
T 3u61_B 149 IIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNF----PDFRKTIG 214 (324)
T ss_dssp SCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTC----SCTTHHHH
T ss_pred cCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCC----CCHHHHHH
Confidence 9999999 884 79999999999877665432 222222 22 34666777665 45555444
No 96
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.64 E-value=3.6e-15 Score=167.88 Aligned_cols=212 Identities=17% Similarity=0.189 Sum_probs=144.7
Q ss_pred CCCCccccccCchhHH---HHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEE
Q 003743 213 GFDSNVSSLSWMGTTA---SDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI 289 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~---~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~ 289 (799)
..+.++++++|.+..+ ..+...+..- ...++|||||||||||++|+++|+.++ ..+
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~---------------~~~~vLL~GppGtGKTtlAr~ia~~~~------~~f 78 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG---------------HLHSMILWGPPGTGKTTLAEVIARYAN------ADV 78 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT---------------CCCEEEEECSTTSSHHHHHHHHHHHTT------CEE
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC---------------CCcEEEEECCCCCcHHHHHHHHHHHhC------CCe
Confidence 3467899999998877 4444443221 125799999999999999999999998 777
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 003743 290 VFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 369 (799)
Q Consensus 290 ~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~ 369 (799)
+.+++.... .......+...........++||||||||.+... ....|+..++..
T Consensus 79 ~~l~a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~---------------~q~~LL~~le~~------- 133 (447)
T 3pvs_A 79 ERISAVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS---------------QQDAFLPHIEDG------- 133 (447)
T ss_dssp EEEETTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHTT-------
T ss_pred EEEEeccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH---------------HHHHHHHHHhcC-------
Confidence 888775532 2223333333332223356889999999998631 223345555531
Q ss_pred cCCCCEEEEEec--CCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh-------cccCCCHHHHHHHHhhcCC
Q 003743 370 CGIGPIAFVASA--QSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-------RSLECSDEILLDVASKCDG 440 (799)
Q Consensus 370 ~~~~~v~vI~tt--n~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~-------~~~~~~~~~l~~la~~~~g 440 (799)
.+++|++| |....++++|.+ |+. ++.|++|+.+++.+++..++.. ..+.+++++++.++..+.|
T Consensus 134 ----~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 134 ----TITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp ----SCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred ----ceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 25555555 444678999999 887 7889999999999999999876 5577899999999999765
Q ss_pred CChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 441 YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 441 ~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
+.+.+.++++.++..+... ......|+.+++..++..
T Consensus 207 -d~R~lln~Le~a~~~a~~~---------~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 207 -DARRALNTLEMMADMAEVD---------DSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp -CHHHHHHHHHHHHHHSCBC---------TTSCEECCHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHHHhcccc---------cCCCCccCHHHHHHHHhh
Confidence 6788888888877544211 012245777777666543
No 97
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.64 E-value=4.3e-15 Score=160.85 Aligned_cols=174 Identities=15% Similarity=0.223 Sum_probs=122.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
.+.+++||||||||||++++++++.+.... .+++++++..+...............|.... ..+++|||||+|.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLS 111 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCccccc
Confidence 356799999999999999999999984321 6788888877643322222211111222222 357899999999986
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC---ccchhhhccCcee--EEEeccCCCH
Q 003743 334 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAA 408 (799)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~---~ld~aL~r~gRf~--~~i~~~~p~~ 408 (799)
.. . .....+...++..... +..+|+++++.+. .++++|.+ ||. ..+.+++ +.
T Consensus 112 ~~---------~----~~~~~l~~~l~~~~~~-------~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~ 168 (324)
T 1l8q_A 112 GK---------E----RTQIEFFHIFNTLYLL-------EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DN 168 (324)
T ss_dssp TC---------H----HHHHHHHHHHHHHHHT-------TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CH
T ss_pred CC---------h----HHHHHHHHHHHHHHHC-------CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CH
Confidence 21 0 1222233333332221 1267777777765 67899999 875 6899999 99
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 409 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 409 ~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
+++.+|++.++...++.+++++++.++..+ .+.+++.+++..++..
T Consensus 169 ~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 169 KTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 999999999999889999999999999998 4788888888777644
No 98
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.64 E-value=5.3e-15 Score=151.68 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=143.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC--------------
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 569 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~-------------- 569 (799)
.+..+.+++|.+...+.+...+... ..+..++|+||||||||++++++++.++.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3456888999999999888876531 12246899999999999999999987643
Q ss_pred ----------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHh
Q 003743 570 ----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 635 (799)
Q Consensus 570 ----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~ 635 (799)
.++.++... ......++.++..+. ...|.+|||||+|.+. ....+.|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~ 148 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 148 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHH
Confidence 123333221 112344566666543 3457899999999973 345667777
Q ss_pred hccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHH
Q 003743 636 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 714 (799)
Q Consensus 636 ~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~ 714 (799)
.++. ...++.+|++||.+..+++++.+ |+ ..+.|++|+.++..++++.++...+.. .+...+.++..+.| ..+
T Consensus 149 ~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 7763 34567888889999999999998 65 678999999999999999888765433 33446778888876 677
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHh
Q 003743 715 DLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 715 di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
.+.+++..|... ....||.+++++++.
T Consensus 223 ~~~~~~~~~~~~---------------~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 223 DALSLTDQAIAS---------------GDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHTT---------------TTSSBCHHHHHHHSC
T ss_pred HHHHHHHHHHhc---------------cCceecHHHHHHHhC
Confidence 777776654211 112699999988763
No 99
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=4.1e-15 Score=179.56 Aligned_cols=244 Identities=20% Similarity=0.242 Sum_probs=166.7
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..+++++|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4688999999888888776653 234589999999999999999999876 67788888
Q ss_pred ccchh--hhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecC
Q 003743 576 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 576 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
+..+. .+|.|..+..++.+|..+....++||||||+|.+.+.+..... ...+.+.|...+ ....+.+|++||
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~~~~~~L~~~l----~~~~~~~I~at~ 323 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLL----SSGKIRVIGSTT 323 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHHHHHHHSSCS----SSCCCEEEEEEC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hHHHHHHHHHHH----hCCCeEEEEEeC
Confidence 88776 4678899999999999998878899999999999876432211 223333343333 345677888888
Q ss_pred CCC-----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHHHCCC-----CcHHHHHH
Q 003743 654 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLA-DDVDLEAIAHMTEG-----FSGADLQA 718 (799)
Q Consensus 654 ~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~g-----~sg~di~~ 718 (799)
.++ .+|+++.| ||. .+.|++|+.+++.+|++.+...+ .+. .+..+..++..+.+ +.+..+..
T Consensus 324 ~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ 400 (758)
T 1r6b_X 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_dssp HHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred chHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHH
Confidence 654 47899999 998 68999999999999998776542 111 22234555554433 44556777
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcC--C--CCCHHHHHHHHHHHHHhh
Q 003743 719 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR--P--SVSEAEKLRLYSIYGQFL 778 (799)
Q Consensus 719 ~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~--~--~~~~~~~~~~~~~~~~f~ 778 (799)
++.+|...+. ... .......|+.+++..++.... | .+..++...+..+...+.
T Consensus 401 lld~a~~~~~--~~~-----~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~ 457 (758)
T 1r6b_X 401 VIDEAGARAR--LMP-----VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_dssp HHHHHHHHHH--HSS-----SCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--ccc-----ccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHH
Confidence 7777653322 110 012245789999999987643 1 333344444555444443
No 100
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.8e-15 Score=160.21 Aligned_cols=205 Identities=12% Similarity=0.134 Sum_probs=138.1
Q ss_pred ccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeEEEEEeccc
Q 003743 221 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVCCSR 296 (799)
Q Consensus 221 l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~~~~v~~s~ 296 (799)
|.+.+...+.|...|...+. -..+.+++||||||||||++++++++.+.... .....++++||..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~-----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM-----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred cCCHHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 55667777777777766654 23577899999999999999999999996321 1136788999876
Q ss_pred ccccc----------------hhhHHHHHHHHHHHH--HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 003743 297 LSLEK----------------GPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 358 (799)
Q Consensus 297 l~~~~----------------~~~~~~~l~~~~~~a--~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ 358 (799)
+.... .+.....+...|... ....+.|++|||+|.+. .+ .++..|.++
T Consensus 91 ~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~q-----------~~L~~l~~~ 156 (318)
T 3te6_A 91 LAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---SE-----------KILQYFEKW 156 (318)
T ss_dssp CC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---CT-----------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---cc-----------hHHHHHHhc
Confidence 54321 111234456666654 23567899999999996 11 334444443
Q ss_pred HHHhccccCCccCCCCEEEEEecCCCCc----cchhhhccCcee-EEEeccCCCHHHHHHHHHHHhhhcc----------
Q 003743 359 MDEYGEKRKSSCGIGPIAFVASAQSLEK----IPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRRS---------- 423 (799)
Q Consensus 359 ld~~~~~~~~~~~~~~v~vI~ttn~~~~----ld~aL~r~gRf~-~~i~~~~p~~~er~~Il~~~l~~~~---------- 423 (799)
... . ..++.+|+++|..+. +++++++ |+. ..|.|++|+.+|..+|++..+....
T Consensus 157 ~~~-~--------~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~ 225 (318)
T 3te6_A 157 ISS-K--------NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDK 225 (318)
T ss_dssp HHC-S--------SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTT
T ss_pred ccc-c--------CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 321 1 125899999998764 4566677 775 5799999999999999998876531
Q ss_pred -------------------------cCCCHHHHHHHHhh---cCCCChhhHHHHHHHHHHHHhcccc
Q 003743 424 -------------------------LECSDEILLDVASK---CDGYDAYDLEILVDRTVHAAVGRYL 462 (799)
Q Consensus 424 -------------------------~~~~~~~l~~la~~---~~g~s~~dl~~lv~~A~~~a~~r~~ 462 (799)
..+++++++.+++. ..| +.+-.-.+|+.|+..|-.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~ 291 (318)
T 3te6_A 226 KEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFV 291 (318)
T ss_dssp CCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHH
Confidence 13689999999885 334 344444667777766655443
No 101
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=5.1e-15 Score=178.56 Aligned_cols=214 Identities=15% Similarity=0.184 Sum_probs=149.4
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
..++|.+.+++.+.+.+....... .. .-.+..++||+||||||||++|+++|+.+.... .+++.++|+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~-----~~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~---~~~i~i~~s~~~ 561 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL-----KD-PKRPIGSFIFLGPTGVGKTELARALAESIFGDE---ESMIRIDMSEYM 561 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC-----SC-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT---TCEEEEEGGGGC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc-----CC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---cceEEEechhcc
Confidence 567888888888888775443211 00 011223799999999999999999999984222 578899999887
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc--ccCCccCCCCEE
Q 003743 299 LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KRKSSCGIGPIA 376 (799)
Q Consensus 299 ~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~--~~~~~~~~~~v~ 376 (799)
...... .. .+........++||||||||.+.+ .+++.|++.++...- .........+++
T Consensus 562 ~~~~~~-~~---~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 622 (758)
T 3pxi_A 562 EKHSTS-GG---QLTEKVRRKPYSVVLLDAIEKAHP---------------DVFNILLQVLEDGRLTDSKGRTVDFRNTI 622 (758)
T ss_dssp SSCCCC-------CHHHHHHCSSSEEEEECGGGSCH---------------HHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred cccccc-cc---hhhHHHHhCCCeEEEEeCccccCH---------------HHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence 655332 11 112222335678999999998852 567788888886321 111122234679
Q ss_pred EEEecCCCCc------------cchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh---------cccCCCHHHHHHHH
Q 003743 377 FVASAQSLEK------------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR---------RSLECSDEILLDVA 435 (799)
Q Consensus 377 vI~ttn~~~~------------ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~---------~~~~~~~~~l~~la 435 (799)
+|+|||.+.. ++|+|.+ ||+..|.|++|+.+++.+|++.++.. ..+.+++++++.++
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~ 700 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVA 700 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHH
Confidence 9999996443 6788888 99889999999999999999987754 24568999999998
Q ss_pred hhc--CCCChhhHHHHHHHHHHHHhcccc
Q 003743 436 SKC--DGYDAYDLEILVDRTVHAAVGRYL 462 (799)
Q Consensus 436 ~~~--~g~s~~dl~~lv~~A~~~a~~r~~ 462 (799)
+.. ..++.++|++++++++...+.+.+
T Consensus 701 ~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 701 EEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp GGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 753 456789999999988877766544
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.63 E-value=5.8e-15 Score=163.13 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=149.6
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC---ceeeEEEEEec
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCC 294 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~---~~~~~~~~v~~ 294 (799)
++.++|.+..++.+.+.+...+. ...+++++|+||||||||++++++++.+.... .....+++++|
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~-----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR-----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS-----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 47889999888888876655442 13466899999999999999999999883210 00267888998
Q ss_pred ccccccch----------------h-hHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHH
Q 003743 295 SRLSLEKG----------------P-IIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 356 (799)
Q Consensus 295 s~l~~~~~----------------~-~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll 356 (799)
........ + .....+..++..+.. ..+.+|||||+|.+...+ .....+..+.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 156 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRIT 156 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHh
Confidence 76432110 0 012223333333322 347799999999996321 0112233333
Q ss_pred HHHHHhccccCCccCCCCEEEEEecCCC---CccchhhhccCceeE-EEeccCCCHHHHHHHHHHHhhh--cccCCCHHH
Q 003743 357 DIMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQR--RSLECSDEI 430 (799)
Q Consensus 357 ~~ld~~~~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf~~-~i~~~~p~~~er~~Il~~~l~~--~~~~~~~~~ 430 (799)
+.++.... ..++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|+...+.. .+..+++++
T Consensus 157 ~~~~~~~~-------~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~ 227 (387)
T 2v1u_A 157 RINQELGD-------RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDV 227 (387)
T ss_dssp HGGGCC------------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSH
T ss_pred hchhhcCC-------CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 32221110 1247889999887 678899998 8864 8999999999999999998875 456678888
Q ss_pred HHHHHhhcC---CCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 431 LLDVASKCD---GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 431 l~~la~~~~---g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
++.++..+. | +++.+..+++.+...+..+ ....++.+++..++..
T Consensus 228 ~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 228 VPLCAALAAREHG-DARRALDLLRVAGEIAERR-----------REERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHT-----------TCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHH
Confidence 999988887 5 5777778888877555322 1244667776666544
No 103
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=1.2e-15 Score=163.87 Aligned_cols=208 Identities=18% Similarity=0.253 Sum_probs=142.7
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh---
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--- 582 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~--- 582 (799)
..+.|.+.+++.+...+...... -..+.++..++||+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 45778888888888776532100 01112344579999999999999999999987 567999999876331
Q ss_pred --hhcccHH----H-HHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---------ccCcE
Q 003743 583 --YIGASEQ----A-VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGV 646 (799)
Q Consensus 583 --~~g~se~----~-i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~---------~~~~v 646 (799)
.+|.... . ...+........++||||||+|.+. ..+++.|+..|+... ...++
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 2221100 0 0112222233445899999999983 457778888776432 11367
Q ss_pred EEEEecCC--------------------------CCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC-------
Q 003743 647 FVFAATSR--------------------------PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL------- 693 (799)
Q Consensus 647 lvi~ttn~--------------------------~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~------- 693 (799)
++|+|||. ...+++++.+ ||+.++.|++|+.+++..|++.++...
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999998 4468889998 999999999999999999998876542
Q ss_pred CCC---CcccHHHHHHHCC--CCcHHHHHHHHHHHHHHHHHHHhc
Q 003743 694 PLA---DDVDLEAIAHMTE--GFSGADLQALLSDAQLSAVHEILN 733 (799)
Q Consensus 694 ~~~---~~~~~~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~ 733 (799)
... .+..++.|+.... ....++++++++.+...++.+.+.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 112 2233566666554 567899999999988877766554
No 104
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.62 E-value=6.2e-15 Score=151.16 Aligned_cols=198 Identities=16% Similarity=0.226 Sum_probs=140.5
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee--
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-- 286 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~-- 286 (799)
|.....+..+.+++|.+..++.+.+.+..- ..+..++|+||||||||++++++++.+.......
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~ 78 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG--------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 78 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT--------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 334445667889999998888777765421 1245799999999999999999999886322100
Q ss_pred ----------------eEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCch
Q 003743 287 ----------------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPST 346 (799)
Q Consensus 287 ----------------~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 346 (799)
..+..++... ......+..++..+. ...+.+|+|||+|.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------ 140 (250)
T 1njg_A 79 PCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------ 140 (250)
T ss_dssp CCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------
T ss_pred CCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH------------
Confidence 0122222221 011223444444432 23578999999999741
Q ss_pred hHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCC
Q 003743 347 SVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426 (799)
Q Consensus 347 ~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~ 426 (799)
.....|+..++... ..+.+|++||.+..+++++.+ |+ ..+.+++++.++..+++..++...+..+
T Consensus 141 ---~~~~~l~~~l~~~~---------~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~ 205 (250)
T 1njg_A 141 ---HSFNALLKTLEEPP---------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAH 205 (250)
T ss_dssp ---HHHHHHHHHHHSCC---------TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCB
T ss_pred ---HHHHHHHHHHhcCC---------CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 33455555555421 247888889988889999998 75 4899999999999999999998888889
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+++.++.+++.+.| +++.+..+++.++
T Consensus 206 ~~~~~~~l~~~~~G-~~~~~~~~~~~~~ 232 (250)
T 1njg_A 206 EPRALQLLARAAEG-SLRDALSLTDQAI 232 (250)
T ss_dssp CHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999999977 7888888887764
No 105
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.62 E-value=6.7e-15 Score=151.36 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=138.4
Q ss_pred CCCCCCCC---hHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccch
Q 003743 506 SGWDDVGG---LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 579 (799)
Q Consensus 506 ~~~~~i~g---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l 579 (799)
..|+++.+ ...+.+.+......+ ...+++|+||||||||++|++++..+ +.+++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD-------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC-------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45666665 346666666655421 24589999999999999999999876 478899998887
Q ss_pred hhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcE-EEEEecCCCC--
Q 003743 580 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV-FVFAATSRPD-- 656 (799)
Q Consensus 580 ~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~v-lvi~ttn~~~-- 656 (799)
...+.. .+.. ...|.+|||||++.+... ......++..++.......+ +|++++..+.
T Consensus 92 ~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTA--------LLEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGG--------GGTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHH--------HHHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 553321 1111 144679999999998542 11234455544433333344 5665555554
Q ss_pred -ccChhhcCCCCcc--eeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHh
Q 003743 657 -LLDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEIL 732 (799)
Q Consensus 657 -~ld~al~r~gRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~ 732 (799)
.+++++.+ ||. ..+.|++|+.+++.+|++.++...++. .+..++.|+..+.| +.+++.+++..+...|...
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~-- 227 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH-- 227 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH--
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh--
Confidence 35688888 775 889999999999999999988765543 33346777887764 6777777777776665332
Q ss_pred cccCCCCCCCCCcccHHHHHHHHh
Q 003743 733 NNIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 733 ~~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
...||.++++++++
T Consensus 228 ----------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ----------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ----------TCCCCHHHHHHHHT
T ss_pred ----------CCCCcHHHHHHHhh
Confidence 13599999998874
No 106
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.62 E-value=1.5e-15 Score=172.56 Aligned_cols=185 Identities=24% Similarity=0.341 Sum_probs=129.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEE
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 574 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i 574 (799)
+..+++++|.+...+.+...+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 45688999999999888877653 223589999999999999999999986 7889999
Q ss_pred eccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC
Q 003743 575 KGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 654 (799)
Q Consensus 575 ~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~ 654 (799)
++. +.|.|..+..++.+|..+....|+||||| + ...+.+.|+..|+ .+.+.+|++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---------~~~a~~~L~~~L~----~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---------AIDASNILKPSLA----RGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT----SSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---------chhHHHHHHHhhc----CCCEEEEecCCH
Confidence 987 67888888899999999998889999999 1 1123445555553 446889999998
Q ss_pred CC-----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHHHCCCCc-----HHHHHHH
Q 003743 655 PD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLA-DDVDLEAIAHMTEGFS-----GADLQAL 719 (799)
Q Consensus 655 ~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~g~s-----g~di~~~ 719 (799)
++ .+|++++| ||. .|.|++|+.+++.+|++.++... ++. .+..+..++..+.+|. +.....+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 87 58999999 997 59999999999999999877653 221 2333555555544333 4466667
Q ss_pred HHHHHHHH
Q 003743 720 LSDAQLSA 727 (799)
Q Consensus 720 ~~~a~~~a 727 (799)
+..|...+
T Consensus 378 l~~a~~~~ 385 (468)
T 3pxg_A 378 IDEAGSKV 385 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666444
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=6.7e-15 Score=162.84 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=147.7
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ce-eeEEEEE
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DL-VAHIVFV 292 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~-~~~~~~v 292 (799)
.++++|.+..++.+.+.+..++.. ..+++++|+||||||||++++++++.+.... .. ...++++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~-----------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN-----------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT-----------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC-----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 378899999999999888766542 2456899999999999999999999883210 00 2678889
Q ss_pred ecccccccchhh-------------------HHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHH-H
Q 003743 293 CCSRLSLEKGPI-------------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL-T 352 (799)
Q Consensus 293 ~~s~l~~~~~~~-------------------~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l-~ 352 (799)
+|....+..... ....+..++..+. ..+.||+|||+|.+...... .. +
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~-----------~~~l 155 (384)
T 2qby_B 88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGG-----------DIVL 155 (384)
T ss_dssp EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTS-----------HHHH
T ss_pred ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCC-----------ceeH
Confidence 987654111111 1122333333332 23339999999999732100 22 3
Q ss_pred HHHHHHHHHhccccCCccCCCCEEEEEecCCC---CccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh--cccCCC
Q 003743 353 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR--RSLECS 427 (799)
Q Consensus 353 ~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~--~~~~~~ 427 (799)
..|.... .++.+|++||.+ +.+++++.+ ||...+.|++|+.+++.+|+...+.. ....++
T Consensus 156 ~~l~~~~-------------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~ 220 (384)
T 2qby_B 156 YQLLRSD-------------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD 220 (384)
T ss_dssp HHHHTSS-------------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHhcCC-------------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC
Confidence 3333221 248899999886 678999998 88779999999999999999998864 345678
Q ss_pred HHHHHHHHhhcCC--CChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 428 DEILLDVASKCDG--YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 428 ~~~l~~la~~~~g--~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
++.++.++..+.+ .+++.+.++++.+...+. ....++.+++..++..
T Consensus 221 ~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 221 DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHH
Confidence 8889999988862 245666677777665442 1234666776666544
No 108
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=3.3e-15 Score=172.03 Aligned_cols=211 Identities=16% Similarity=0.201 Sum_probs=139.9
Q ss_pred eeecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCC---CCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 205 VKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL---PLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~---~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
....|.....+..+++++|.+..++.+.+++..+... .+..+...|. +.++++||+||||||||++|+++|+.++
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~-~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~- 102 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENS-KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG- 102 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHH-HHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhh-chhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-
Confidence 3445766777889999999999999999888654310 0111222222 3568999999999999999999999997
Q ss_pred CCceeeEEEEEecccccccchhhHHHHH---------HHHHHHH-----HhcCCcEEEEccccccccCCCCCCCCCCchh
Q 003743 282 HKDLVAHIVFVCCSRLSLEKGPIIRQAL---------SNFISEA-----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTS 347 (799)
Q Consensus 282 ~~~~~~~~~~v~~s~l~~~~~~~~~~~l---------~~~~~~a-----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~ 347 (799)
..++.++|++...... ....+ ..+|..+ ....+.||||||+|.+.....
T Consensus 103 -----~~~i~in~s~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~---------- 165 (516)
T 1sxj_A 103 -----YDILEQNASDVRSKTL--LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR---------- 165 (516)
T ss_dssp -----CEEEEECTTSCCCHHH--HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------
T ss_pred -----CCEEEEeCCCcchHHH--HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----------
Confidence 7889999988654321 11111 1111111 124578999999999973210
Q ss_pred HHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCC
Q 003743 348 VIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 427 (799)
Q Consensus 348 ~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~ 427 (799)
.....|...++... .++++++++.....++ .+.+ +...+.|++|+.+++.+++...+...++.++
T Consensus 166 --~~l~~L~~~l~~~~---------~~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~ 230 (516)
T 1sxj_A 166 --GGVGQLAQFCRKTS---------TPLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230 (516)
T ss_dssp --THHHHHHHHHHHCS---------SCEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred --HHHHHHHHHHHhcC---------CCEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 12344555554321 1355555444333443 3444 4458999999999999999999988888899
Q ss_pred HHHHHHHHhhcCCCChhhHHHHH
Q 003743 428 DEILLDVASKCDGYDAYDLEILV 450 (799)
Q Consensus 428 ~~~l~~la~~~~g~s~~dl~~lv 450 (799)
+++++.+++.+.| +.+.+.+++
T Consensus 231 ~~~l~~la~~s~G-diR~~i~~L 252 (516)
T 1sxj_A 231 PNVIDRLIQTTRG-DIRQVINLL 252 (516)
T ss_dssp TTHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHHHHHHcCC-cHHHHHHHH
Confidence 9999999998765 333433333
No 109
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=6.1e-14 Score=152.48 Aligned_cols=236 Identities=20% Similarity=0.273 Sum_probs=159.9
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhh
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 584 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~ 584 (799)
+..++++.|.+.+++.+...+.... ..+ .++.+++|+||||||||++++++|+.++.++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 3567888888888888876654210 001 23357999999999999999999999999888777655421
Q ss_pred cccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc----------------ccCcEEE
Q 003743 585 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFV 648 (799)
Q Consensus 585 g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~----------------~~~~vlv 648 (799)
...+..++... ..++|+||||++.+.+ .+.+.++..|+... ....+.+
T Consensus 90 ---~~~l~~~~~~~--~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 ---QGDMAAILTSL--ERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---HHHHHHHHHHC--CTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---HHHHHHHHHHc--cCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 23344444332 2456999999999853 12223332232110 0124667
Q ss_pred EEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 003743 649 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSA 727 (799)
Q Consensus 649 i~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a 727 (799)
+++|+.+..+++++++ ||...+.+++|+.+++.+|++...+..++. .+.....|+..+.| +.+++..+++.+...|
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 7799999999999999 998889999999999999999887766544 23346778888876 4577777777766555
Q ss_pred HHHHhcccCCCCCCCCCcccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhhcCC
Q 003743 728 VHEILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFLDSK 781 (799)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~---~~~~~~~~~~~~~~~~f~~~~ 781 (799)
..+ +...||.+++++++..... ..+..+..-+..+...|..+.
T Consensus 231 ~~~-----------~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 276 (334)
T 1in4_A 231 TVV-----------KADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGP 276 (334)
T ss_dssp HHH-----------TCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCC
T ss_pred HHc-----------CCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCc
Confidence 432 1236999999999987653 233444445566666665443
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=8.5e-15 Score=161.99 Aligned_cols=212 Identities=17% Similarity=0.160 Sum_probs=143.2
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----------CCeEEEEecc
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----------SLRFISVKGP 577 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----------~~~~i~i~~~ 577 (799)
++++|.++..+.+...+...... ..+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 67889998888888776532111 234589999999999999999999987 8999999987
Q ss_pred chh-h----------hh-------hccc-HHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHH-HHHHHhhc
Q 003743 578 ELL-N----------KY-------IGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV-VNQFLTEL 637 (799)
Q Consensus 578 ~l~-~----------~~-------~g~s-e~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~-~~~ll~~l 637 (799)
... + .. .|.+ ...+..++..+....+ ||||||+|.+.... ...+ +..|+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~-------~~~~~l~~l~~~~ 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR-------GGDIVLYQLLRSD 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST-------TSHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC-------CCceeHHHHhcCC
Confidence 643 1 11 1222 2334444444444444 99999999996432 1233 44554433
Q ss_pred cCccccCcEEEEEecCCC---CccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHcc----CCCCCcccHHHHHHHCCC
Q 003743 638 DGVEVLTGVFVFAATSRP---DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK----LPLADDVDLEAIAHMTEG 710 (799)
Q Consensus 638 d~~~~~~~vlvi~ttn~~---~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~~~~~~~~la~~~~g 710 (799)
.++.||++||.+ +.+++++.+ ||...+.|++|+.+++.+|++.++.. ..+ .+..++.++..+.+
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAK 233 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHT
T ss_pred ------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHh
Confidence 678888899887 668999998 88789999999999999999988763 222 23335667766652
Q ss_pred C--cHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcC
Q 003743 711 F--SGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR 759 (799)
Q Consensus 711 ~--sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~ 759 (799)
. ..+.+.++|+.|...|. +...|+.+|+..++....
T Consensus 234 ~~G~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 1 22333345555443331 235799999998887653
No 111
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.60 E-value=8.3e-15 Score=162.07 Aligned_cols=252 Identities=17% Similarity=0.110 Sum_probs=150.5
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchh---------------hhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLW---------------FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD 284 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~---------------~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~ 284 (799)
.|+|.+.+++.+...+...+....... -.......+.++||+||||||||++|+++|+.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 468888888888766532211000000 0001123467899999999999999999999997
Q ss_pred eeeEEEEEeccccccc-chh-hHHHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 003743 285 LVAHIVFVCCSRLSLE-KGP-IIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 358 (799)
Q Consensus 285 ~~~~~~~v~~s~l~~~-~~~-~~~~~l~~~~~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ 358 (799)
.+++.++|..+... ..+ .....+..++... ....++||||||+|.+...+..... ........+...|+..
T Consensus 98 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~~~Ll~~ 174 (376)
T 1um8_A 98 --IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSI-TRDVSGEGVQQALLKI 174 (376)
T ss_dssp --CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHH
T ss_pred --CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCce-ecccchHHHHHHHHHH
Confidence 77888998876521 111 1123344444332 1246789999999999854221110 0111112367778888
Q ss_pred HHHhc----cccCC--------ccCCCCEEEEEecCCC-----------------------------------------C
Q 003743 359 MDEYG----EKRKS--------SCGIGPIAFVASAQSL-----------------------------------------E 385 (799)
Q Consensus 359 ld~~~----~~~~~--------~~~~~~v~vI~ttn~~-----------------------------------------~ 385 (799)
+++.. ..... .....++++|+++|.. .
T Consensus 175 le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (376)
T 1um8_A 175 VEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTY 254 (376)
T ss_dssp HHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHT
T ss_pred hhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhc
Confidence 87531 00000 0112346777777620 1
Q ss_pred ccchhhhccCceeEEEeccCCCHHHHHHHHHH----Hhh---------hcccCCCHHHHHHHHhhcC--CCChhhHHHHH
Q 003743 386 KIPQSLTSSGRFDFHVQLPAPAASERKAILEH----EIQ---------RRSLECSDEILLDVASKCD--GYDAYDLEILV 450 (799)
Q Consensus 386 ~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~----~l~---------~~~~~~~~~~l~~la~~~~--g~s~~dl~~lv 450 (799)
.+.|+|.+ |++..+.|++++.++...|+.. ++. ...+.+++++++.++.... ..+.+++.+++
T Consensus 255 ~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~l 332 (376)
T 1um8_A 255 GLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAII 332 (376)
T ss_dssp TCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHH
T ss_pred CCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHH
Confidence 24566777 9988999999999999999962 211 2346689999999998865 36789999999
Q ss_pred HHHHHHHhcccccCCCcccccccccceecccchhc
Q 003743 451 DRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 485 (799)
Q Consensus 451 ~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al 485 (799)
.+++..++.+.... ......|+.+++....
T Consensus 333 e~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 333 EDFCLDIMFDLPKL-----KGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHHTGGGG-----TTSEEEECHHHHTTSS
T ss_pred HHHHHHHHhhccCC-----CCCEEEEeHHHhcCCC
Confidence 99988877665321 1122446666665544
No 112
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=9.8e-15 Score=159.60 Aligned_cols=202 Identities=21% Similarity=0.235 Sum_probs=141.1
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....+..+++++|.+.+++.+...+ .. ....++||+||||||||++++++|+.+........
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l----~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTL----KS-----------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHT----TC-----------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHH----hc-----------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 3445556778999999998887666543 21 11235999999999999999999999763211113
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHH------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 355 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~L 355 (799)
.++.+++++..+ .......+...... .....+.||||||+|.+.+ ...+.|
T Consensus 91 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------~~~~~L 153 (353)
T 1sxj_D 91 RILELNASDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------DAQSAL 153 (353)
T ss_dssp SEEEECSSSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------------HHHHHH
T ss_pred ceEEEccccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------------HHHHHH
Confidence 466777776432 12222222211110 0012456999999999862 334566
Q ss_pred HHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHH
Q 003743 356 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 435 (799)
Q Consensus 356 l~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la 435 (799)
+..++.... ...+|.++|.+..+++++++ |+. .+.|++|+.++...++...+...++.+++++++.++
T Consensus 154 l~~le~~~~---------~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 221 (353)
T 1sxj_D 154 RRTMETYSG---------VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL 221 (353)
T ss_dssp HHHHHHTTT---------TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHhcCC---------CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 666666432 25677788999999999999 886 899999999999999999998888899999999999
Q ss_pred hhcCCCChhhHHHHHHHHH
Q 003743 436 SKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 436 ~~~~g~s~~dl~~lv~~A~ 454 (799)
..+.| +.+.+.++++.+.
T Consensus 222 ~~~~G-~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 222 DISAG-DLRRGITLLQSAS 239 (353)
T ss_dssp HHTSS-CHHHHHHHHHHTH
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 99886 4566556555544
No 113
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=3e-15 Score=147.90 Aligned_cols=166 Identities=15% Similarity=0.237 Sum_probs=113.6
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc----eeeEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHI 289 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~----~~~~~ 289 (799)
.+..+++++|.+..++.+.+.+.. ..+++++|+||||||||++++++++.+..... ...++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~---------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS---------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred hhccccccccchHHHHHHHHHHhc---------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 356788899999888777765422 23577999999999999999999999853110 12567
Q ss_pred EEEeccccc--ccchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 290 VFVCCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 290 ~~v~~s~l~--~~~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
+.+++..+. ....+.....+..++..+.. ..+.||+|||+|.+...+.... . . .+...+...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~--~----~~~~~l~~~~~~----- 149 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-A--M----DAGNMLKPALAR----- 149 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------C--C----CCHHHHHHHHHT-----
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-h--H----HHHHHHHHhhcc-----
Confidence 788887664 23345556667777765543 4577999999999974322111 0 1 123333333332
Q ss_pred CCccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHH
Q 003743 367 KSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAIL 415 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il 415 (799)
..+.+|++||.+. .+++++.+ ||. .+.+++|+.+++.+|+
T Consensus 150 ------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1367788888765 67999999 998 7999999999998875
No 114
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=2.9e-14 Score=153.87 Aligned_cols=199 Identities=18% Similarity=0.208 Sum_probs=140.5
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeE
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAH 288 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~ 288 (799)
|.....+..|++++|.+..++.+.+.+.. + ...++||+||||||||++|+++++.+.... ....
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~ 78 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT-------------G--SMPHLLFAGPPGVGKTTAALALARELFGEN-WRHN 78 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHH-------------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHH
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHc-------------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCc
Confidence 44455677899999998888877765532 1 123599999999999999999999975321 1134
Q ss_pred EEEEecccccccchhhHHHHHHHHHHHH--HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 289 IVFVCCSRLSLEKGPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 289 ~~~v~~s~l~~~~~~~~~~~l~~~~~~a--~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
++.+++++..+. ......+....... ....+.+|+|||+|.+.. ...+.|+..++....
T Consensus 79 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~~~-- 139 (327)
T 1iqp_A 79 FLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTMEMFSS-- 139 (327)
T ss_dssp EEEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------HHHHHHHHHHHHTTT--
T ss_pred eEEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------HHHHHHHHHHHhcCC--
Confidence 667777653221 11112222221110 114578999999999852 344556666665332
Q ss_pred CCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhH
Q 003743 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL 446 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl 446 (799)
.+.+|+++|.+..+.+++.+ |+. .+.|++++.++..+++...+...++.++++.++.++..+.| +.+.+
T Consensus 140 -------~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~ 208 (327)
T 1iqp_A 140 -------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRA 208 (327)
T ss_dssp -------TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHH
T ss_pred -------CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHH
Confidence 37788889999999999999 887 89999999999999999999888888999999999998866 56655
Q ss_pred HHHHHHH
Q 003743 447 EILVDRT 453 (799)
Q Consensus 447 ~~lv~~A 453 (799)
.++++.+
T Consensus 209 ~~~l~~~ 215 (327)
T 1iqp_A 209 INILQAA 215 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 115
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.60 E-value=5.8e-15 Score=158.83 Aligned_cols=207 Identities=17% Similarity=0.199 Sum_probs=139.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEec
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKG 576 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~ 576 (799)
++.+..|++++|.+.+++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34557789999999998888776542 112359999999999999999999986 456888888
Q ss_pred cchhhhhhcccHHHHHHHHHHh--HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC
Q 003743 577 PELLNKYIGASEQAVRDIFSKA--TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 654 (799)
Q Consensus 577 ~~l~~~~~g~se~~i~~~f~~a--~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~ 654 (799)
++..+ .......+....... ....+.||||||+|.+. ....+.|+..++. ....+.+|++||.
T Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~ 141 (319)
T 2chq_A 77 SDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM--YSKSCRFILSCNY 141 (319)
T ss_dssp TSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSS--SSSSEEEEEEESC
T ss_pred ccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCC
Confidence 76432 111222222222111 12457899999999983 3456677777763 3456778888999
Q ss_pred CCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 003743 655 PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILN 733 (799)
Q Consensus 655 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 733 (799)
+..+++++.+ |+. .+.|++|+.+++.++++.++...++. .+..++.|+..+. ++++.+.+.....+. .
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~----G~~r~~~~~l~~~~~----~ 210 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG----GDFRKAINALQGAAA----I 210 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTT----TCHHHHHHHHHHHHH----S
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHH----c
Confidence 9999999999 775 78999999999999999988766553 2333555565544 455554433222221 0
Q ss_pred ccCCCCCCCCCcccHHHHHHHHh
Q 003743 734 NIDSNEPGKMPVITDALLKSIAS 756 (799)
Q Consensus 734 ~~~~~~~~~~~~it~e~l~~a~~ 756 (799)
...||.+++..++.
T Consensus 211 ---------~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 211 ---------GEVVDADTIYQITA 224 (319)
T ss_dssp ---------SSCBCHHHHHHHTT
T ss_pred ---------CCCCCHHHHHHHHC
Confidence 12477777776654
No 116
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=1.6e-14 Score=156.81 Aligned_cols=210 Identities=18% Similarity=0.152 Sum_probs=136.5
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh--hhhhc
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL--NKYIG 585 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~--~~~~g 585 (799)
+.++.|.+++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++..-. ....|
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 46788888888887765542 24899999999999999999999999999998874211 11111
Q ss_pred ccHHH-HHHHHHHhHhcC---CeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCc---------cccCcEEEEEec
Q 003743 586 ASEQA-VRDIFSKATAAA---PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV---------EVLTGVFVFAAT 652 (799)
Q Consensus 586 ~se~~-i~~~f~~a~~~~---p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~---------~~~~~vlvi~tt 652 (799)
..... ....| ..... .+||||||++.+. ....+.|+..|+.. ....+++||+|+
T Consensus 91 ~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~ 157 (331)
T 2r44_A 91 TMIYNQHKGNF--EVKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ 157 (331)
T ss_dssp EEEEETTTTEE--EEEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE
T ss_pred ceeecCCCCce--EeccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEec
Confidence 11000 00000 00112 2699999999973 34566666666531 123357788888
Q ss_pred CCCC-----ccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-----------------------CcccHHHH
Q 003743 653 SRPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-----------------------DDVDLEAI 704 (799)
Q Consensus 653 n~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----------------------~~~~~~~l 704 (799)
|..+ .+++++++ ||+..+.+++|+.+++.+|++......... .+...+.+
T Consensus 158 np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i 235 (331)
T 2r44_A 158 NPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYI 235 (331)
T ss_dssp CTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHH
T ss_pred CCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 8543 28999999 999889999999999999999887643211 11112333
Q ss_pred HHHC-------------------CCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 705 AHMT-------------------EGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 705 a~~~-------------------~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
+... .|.|.+.+..+++.|...|.. .+...|+.+|+.+++..+
T Consensus 236 ~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l-----------~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 236 IELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF-----------NNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH-----------TTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH-----------cCCCCCCHHHHHHHHHHH
Confidence 3221 145677777777766554432 123468999999988754
No 117
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.59 E-value=1.6e-14 Score=157.86 Aligned_cols=215 Identities=20% Similarity=0.212 Sum_probs=132.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC--------------
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 569 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~-------------- 569 (799)
++..|+++.|.+.+++.+......+ ...++||+||||||||++|+++++.++.
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 3467999999998877654433221 2247999999999999999999998863
Q ss_pred -------------------eEEEEeccchhhhhhcccHHHHHHHHHHh---------HhcCCeEEEEcccccccCCCCCC
Q 003743 570 -------------------RFISVKGPELLNKYIGASEQAVRDIFSKA---------TAAAPCLLFFDEFDSIAPKRGHD 621 (799)
Q Consensus 570 -------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a---------~~~~p~ILfiDEid~l~~~r~~~ 621 (799)
+++.+..........|... +...+..+ ....++||||||+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 1222111111111122100 11222222 11235799999999984
Q ss_pred CCchhhHHHHHHHhhccCc----c-------ccCcEEEEEecCCCC-ccChhhcCCCCcceeeecCCC-CHHHHHHHHHH
Q 003743 622 NTGVTDRVVNQFLTELDGV----E-------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFP-SPRERLDILKV 688 (799)
Q Consensus 622 ~~~~~~r~~~~ll~~ld~~----~-------~~~~vlvi~ttn~~~-~ld~al~r~gRf~~~i~~~~p-~~~~r~~Il~~ 688 (799)
...++.|+..|+.- . ...++++|+|||..+ .+++++++ ||+..+++++| +.+++.+|++.
T Consensus 158 -----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 -----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 34566676666431 1 112688999999744 79999999 99988999998 67788788866
Q ss_pred HHc-------------------------------cCCCCCcccHHHHHHHCCC--C-cHHHHHHHHHHHHHHHHHHHhcc
Q 003743 689 ISR-------------------------------KLPLADDVDLEAIAHMTEG--F-SGADLQALLSDAQLSAVHEILNN 734 (799)
Q Consensus 689 ~~~-------------------------------~~~~~~~~~~~~la~~~~g--~-sg~di~~~~~~a~~~a~~~~~~~ 734 (799)
.+. ...+ .+..++.|+....+ . +.+.+.++++.|...|..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~---- 305 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALE---- 305 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT----
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc----
Confidence 311 1122 22224444444332 2 4577777777666555322
Q ss_pred cCCCCCCCCCcccHHHHHHHHhhc
Q 003743 735 IDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 735 ~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
+...|+.+|+.+++..+
T Consensus 306 -------~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 306 -------GATAVGRDHLKRVATMA 322 (350)
T ss_dssp -------TCSBCCHHHHHHHHHHH
T ss_pred -------CCCcCCHHHHHHHHHHH
Confidence 23469999999988754
No 118
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.59 E-value=1e-14 Score=156.95 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=138.3
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....+..|++++|.+..++.+.+. +.. ....++||+||||||||++++++++.+.... ...
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~----l~~-----------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~ 69 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGY----VER-----------KNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRD 69 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTT----TTT-----------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHH
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHH----HhC-----------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccC
Confidence 455666778899999998877665543 321 1223499999999999999999999974221 114
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHHH-H-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISEA-L-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 365 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~a-~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~ 365 (799)
.++.++++...+.. .....+....... . ...+.|++|||+|.+.. ...+.|+..++...
T Consensus 70 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~~-- 130 (319)
T 2chq_A 70 NFIEMNASDERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMYS-- 130 (319)
T ss_dssp HCEEEETTSTTCTT--TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSSSS--
T ss_pred CeEEEeCccccChH--HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHhcC--
Confidence 56778887654321 1122222221111 1 14578999999999852 22334444443321
Q ss_pred cCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhh
Q 003743 366 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYD 445 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~d 445 (799)
..+.+|++||.+..+++++.+ |+. .+.|++|+.+++.+++...+...++.++++.++.++..+.| +.+.
T Consensus 131 -------~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~ 199 (319)
T 2chq_A 131 -------KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRK 199 (319)
T ss_dssp -------SSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHH
T ss_pred -------CCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 247888889999999999999 876 89999999999999999999988999999999999987755 4555
Q ss_pred HHHHHHHH
Q 003743 446 LEILVDRT 453 (799)
Q Consensus 446 l~~lv~~A 453 (799)
+.++++.+
T Consensus 200 ~~~~l~~~ 207 (319)
T 2chq_A 200 AINALQGA 207 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 119
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.59 E-value=6.4e-14 Score=152.34 Aligned_cols=221 Identities=17% Similarity=0.222 Sum_probs=145.1
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 293 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~ 293 (799)
.+..++.++|.+.+++.+...+..... .+ ..+.+++|+|||||||||+++++|+.++ ..+...+
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~---------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~------~~~~~~s 83 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM---------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQ------TNIHVTS 83 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH---------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHT------CCEEEEE
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh---------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEe
Confidence 455788888887666655544432210 11 2346799999999999999999999997 3333344
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----ccC-
Q 003743 294 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRK- 367 (799)
Q Consensus 294 ~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~-----~~~- 367 (799)
...+.. ... +..++... ..+.|+||||+|.+.+ ...+.|...++.... ...
T Consensus 84 g~~~~~--~~~----l~~~~~~~--~~~~v~~iDE~~~l~~---------------~~~e~L~~~~~~~~~~i~~~~~~~ 140 (334)
T 1in4_A 84 GPVLVK--QGD----MAAILTSL--ERGDVLFIDEIHRLNK---------------AVEELLYSAIEDFQIDIMIGKGPS 140 (334)
T ss_dssp TTTCCS--HHH----HHHHHHHC--CTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCCCC-------
T ss_pred chHhcC--HHH----HHHHHHHc--cCCCEEEEcchhhcCH---------------HHHHHHHHHHHhcccceeeccCcc
Confidence 332211 111 22222222 3567999999999862 122333333432210 000
Q ss_pred ---CccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChh
Q 003743 368 ---SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 444 (799)
Q Consensus 368 ---~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~ 444 (799)
.......+.++++++.+..+++++++ ||...+.+++|+.+++.+|++......++.++++++..++..+.| +++
T Consensus 141 ~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R 217 (334)
T 1in4_A 141 AKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPR 217 (334)
T ss_dssp --------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHH
T ss_pred cccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChH
Confidence 00012246778899999999999999 998889999999999999999998888888999999999999877 578
Q ss_pred hHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 445 DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 445 dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
.+..+++++...|..+ ....++.+++..++..
T Consensus 218 ~a~~ll~~~~~~a~~~-----------~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 218 IAIRLTKRVRDMLTVV-----------KADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHHHHHHH-----------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHH
Confidence 8888888776555322 1134666666655543
No 120
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=2.7e-14 Score=156.10 Aligned_cols=209 Identities=19% Similarity=0.184 Sum_probs=140.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC------CeEEEEec
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS------LRFISVKG 576 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~------~~~i~i~~ 576 (799)
+.+..|++++|.+++++.+...+... ...++||+||||||||++|+++|+.++ ..++.+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 34567899999999998888776531 123599999999999999999998853 46888888
Q ss_pred cchhhhhhcccHHHHHHHHHHh----------------HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCc
Q 003743 577 PELLNKYIGASEQAVRDIFSKA----------------TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV 640 (799)
Q Consensus 577 ~~l~~~~~g~se~~i~~~f~~a----------------~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~ 640 (799)
++..+ ...+++.+... ....+.||||||+|.+. ....+.|+..|+..
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETY 160 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhc
Confidence 76421 11122222111 11345699999999984 33456777777633
Q ss_pred cccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHH
Q 003743 641 EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQAL 719 (799)
Q Consensus 641 ~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~ 719 (799)
.....+|.+||.+..+++++++ |+. .+.|++|+.++...+++.++...++. .+..++.|+..+.|. .+.+.++
T Consensus 161 --~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~ 234 (353)
T 1sxj_D 161 --SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITL 234 (353)
T ss_dssp --TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHH
T ss_pred --CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 2345566678999999999998 775 78999999999999999887655432 334467788887753 3333344
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 720 LSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 720 ~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
+..+...+-+. .....||.+++.+++..
T Consensus 235 l~~~~~~~~~~----------~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 235 LQSASKGAQYL----------GDGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHTHHHHHHH----------CSCCCCCHHHHHHHHTC
T ss_pred HHHHHHhcCCC----------ccCccccHHHHHHHhCC
Confidence 44333322111 01125899999887764
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.58 E-value=2.2e-14 Score=188.95 Aligned_cols=338 Identities=14% Similarity=0.162 Sum_probs=182.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHH------------hcCC
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL------------DHAP 321 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~------------~~~p 321 (799)
.++++||+||||||||++++.....+.. ..++.++++.-... ..+.+.+...+.... .+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~-----~~~~~infS~~Tta--~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPD-----FEVVSLNFSSATTP--ELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTT-----EEEEEECCCTTCCH--HHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCC-----CceEEEEeeCCCCH--HHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 3566999999999999887654443321 55677888764332 222222221110000 0122
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh---ccccCCccCCCCEEEEEecCCC-----Cccchhhhc
Q 003743 322 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY---GEKRKSSCGIGPIAFVASAQSL-----EKIPQSLTS 393 (799)
Q Consensus 322 ~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~---~~~~~~~~~~~~v~vI~ttn~~-----~~ld~aL~r 393 (799)
.|+||||++... .+..|.+ .....|..++|.. ......+....++.+|+|+|++ ..++++|.|
T Consensus 1376 ~VlFiDDiNmp~---~D~yGtQ------~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r 1446 (3245)
T 3vkg_A 1376 LVVFCDEINLPS---TDKYGTQ------RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR 1446 (3245)
T ss_dssp EEEEETTTTCCC---CCTTSCC------HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred EEEEecccCCCC---ccccccc------cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh
Confidence 499999998764 3444444 3455566666642 2222334445679999999987 458999999
Q ss_pred cCceeEEEeccCCCHHHHHHHHHHHhhhccc------CCCHHHHHHHH-------h-------hcCCCChhhHHHHHHHH
Q 003743 394 SGRFDFHVQLPAPAASERKAILEHEIQRRSL------ECSDEILLDVA-------S-------KCDGYDAYDLEILVDRT 453 (799)
Q Consensus 394 ~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~------~~~~~~l~~la-------~-------~~~g~s~~dl~~lv~~A 453 (799)
||. .+.++.|+.++...|+..++....- .+.+....... . ...-|+.+|+..+++..
T Consensus 1447 --~F~-vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGl 1523 (3245)
T 3vkg_A 1447 --HAP-ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRAL 1523 (3245)
T ss_dssp --TCC-EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHH
T ss_pred --hce-EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHH
Confidence 998 6999999999999998876653211 11122222111 1 12457899998887765
Q ss_pred HHHHhcccccCCCc----ccc-----cccccceeccc---chhcc----cccccccccccc---cccCCCCCCCCCCCCh
Q 003743 454 VHAAVGRYLHSDSS----FEK-----HIKPTLVRDDF---SQAMH----EFLPVAMRDITK---TSAEGGRSGWDDVGGL 514 (799)
Q Consensus 454 ~~~a~~r~~~~~~~----~~~-----~~~~~l~~edf---~~al~----~~~p~~~~~~~~---~~~~~~~~~~~~i~g~ 514 (799)
+...-......... +.+ ..++-+..+|- ...+. +..+........ .....-...+..+ ..
T Consensus 1524 l~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v-~~ 1602 (3245)
T 3vkg_A 1524 LEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPV-NR 1602 (3245)
T ss_dssp HHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CC-CH
T ss_pred HHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccC-CH
Confidence 54311000000000 000 00011111110 01111 100100000000 0000000123333 34
Q ss_pred HHHHHHHHHHhhccCC---------Chh------HHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 515 TDIQNAIKEMIELPSK---------FPN------IFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 515 ~~~~~~l~~~~~~~~~---------~~~------~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
+++++.+.+.+..... +.+ ...+.-.+|++|+||.|..|+||++++|..|..++..++.+..+.-
T Consensus 1603 ~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~ 1682 (3245)
T 3vkg_A 1603 SDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNN 1682 (3245)
T ss_dssp HHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----
T ss_pred HHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCC
Confidence 5666666655543211 111 1122223578899999999999999999999999999999987764
Q ss_pred hhhhhcccHHHHHHHHHHhH-hcCCeEEEEccccc
Q 003743 580 LNKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDS 613 (799)
Q Consensus 580 ~~~~~g~se~~i~~~f~~a~-~~~p~ILfiDEid~ 613 (799)
++ ..+....++.++..|. .+.|.+++|+|.+-
T Consensus 1683 Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1715 (3245)
T 3vkg_A 1683 YK--SSDFDDDLRMLLKRAGCKEEKICFIFDESNV 1715 (3245)
T ss_dssp CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGGC
T ss_pred CC--HHHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 43 3345678899999884 46778888887643
No 122
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=4.7e-14 Score=151.96 Aligned_cols=196 Identities=19% Similarity=0.161 Sum_probs=139.9
Q ss_pred CccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeE
Q 003743 209 GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAH 288 (799)
Q Consensus 209 ~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~ 288 (799)
|.....+..+++++|.+..++.+.+.+.. + ...++||+||||+|||++++++++.+.... ....
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~ 74 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKD-------------G--NMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADG 74 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHS-------------C--CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHH
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHc-------------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCC
Confidence 44445577789999999888877765432 1 122499999999999999999999974221 1134
Q ss_pred EEEEecccccccchhhHHHHHHHHHHHHH-------hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 003743 289 IVFVCCSRLSLEKGPIIRQALSNFISEAL-------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 361 (799)
Q Consensus 289 ~~~v~~s~l~~~~~~~~~~~l~~~~~~a~-------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~ 361 (799)
++.+++++..+ ... ++.++.... ...+.||+|||+|.+.. ...+.|+..++.
T Consensus 75 ~~~~~~~~~~~--~~~----i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~ 133 (323)
T 1sxj_B 75 VLELNASDDRG--IDV----VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------GAQQALRRTMEL 133 (323)
T ss_dssp EEEECTTSCCS--HHH----HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------HHHHTTHHHHHH
T ss_pred EEEecCccccC--hHH----HHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------HHHHHHHHHHhc
Confidence 66777765322 222 333333332 23478999999999852 234455555655
Q ss_pred hccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCC
Q 003743 362 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 441 (799)
Q Consensus 362 ~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~ 441 (799)
... .+.+|++||.+..+++++.+ |+. .+.|++|+.+++.+++...+...++.++++.++.++..+.|
T Consensus 134 ~~~---------~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G- 200 (323)
T 1sxj_B 134 YSN---------STRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG- 200 (323)
T ss_dssp TTT---------TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-
T ss_pred cCC---------CceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 322 36788888999999999999 776 89999999999999999999888888999999999998866
Q ss_pred ChhhHHHHHHHHH
Q 003743 442 DAYDLEILVDRTV 454 (799)
Q Consensus 442 s~~dl~~lv~~A~ 454 (799)
+++.+.++++.+.
T Consensus 201 ~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 201 DMRQAINNLQSTV 213 (323)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555443
No 123
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.58 E-value=1.1e-14 Score=177.67 Aligned_cols=200 Identities=24% Similarity=0.340 Sum_probs=129.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEE
Q 003743 505 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 574 (799)
Q Consensus 505 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i 574 (799)
+..+++++|.++..+.+...+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 35688999999888888776642 223579999999999999999999987 8899999
Q ss_pred eccchh--hhhhcccHHHHHHHHHHhHhc-CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe
Q 003743 575 KGPELL--NKYIGASEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 575 ~~~~l~--~~~~g~se~~i~~~f~~a~~~-~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
+++.+. ..|.|..+..++.+|..+... .|+||||||+|.+.+.+.... ...+.+.|...++ ...+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHHh----CCCeEEEEe
Confidence 999887 568899999999999998764 789999999999986543221 1223333444442 345778888
Q ss_pred cCCCCc----cChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHHHC-----CCCcHHHHH
Q 003743 652 TSRPDL----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLA-DDVDLEAIAHMT-----EGFSGADLQ 717 (799)
Q Consensus 652 tn~~~~----ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~-----~g~sg~di~ 717 (799)
||.++. +|+++.| ||+. +.|++|+.+++.+|++.++... .+. .+..+..++..+ +.|.+....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 887753 7999999 9985 8999999999999998766533 111 222344444433 345566666
Q ss_pred HHHHHHHHHH
Q 003743 718 ALLSDAQLSA 727 (799)
Q Consensus 718 ~~~~~a~~~a 727 (799)
.++.+|+..+
T Consensus 383 ~lldea~a~~ 392 (854)
T 1qvr_A 383 DLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665433
No 124
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=3.9e-15 Score=169.23 Aligned_cols=194 Identities=16% Similarity=0.210 Sum_probs=134.9
Q ss_pred CCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC----ceeeE
Q 003743 213 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAH 288 (799)
Q Consensus 213 ~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~----~~~~~ 288 (799)
..+..++.++|.+..++.+++.+.. ....++||+||||||||++|+++|+.+.... .....
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r---------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 238 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR---------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC---------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc---------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 3455788999999888877765432 2345799999999999999999999984321 11255
Q ss_pred EEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCC
Q 003743 289 IVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 368 (799)
Q Consensus 289 ~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~ 368 (799)
++.++++ ..+.+.+...++.+|..+....++||||| . .. ...+.|+..++
T Consensus 239 ~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~---~~-----------~a~~~L~~~L~-------- 288 (468)
T 3pxg_A 239 VMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A---AI-----------DASNILKPSLA-------- 288 (468)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT--------
T ss_pred EEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C---ch-----------hHHHHHHHhhc--------
Confidence 7777776 44455666678888888887788999999 1 00 12233333332
Q ss_pred ccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHHhhcC
Q 003743 369 SCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCD 439 (799)
Q Consensus 369 ~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~----~~~~~~~~~l~~la~~~~ 439 (799)
.+.+.+|++||..+ .+++++.+ ||. .|.|++|+.+++.+|++.++.. +++.++++++..++..+.
T Consensus 289 ---~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~ 362 (468)
T 3pxg_A 289 ---RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSD 362 (468)
T ss_dssp ---SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred ---CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 12488999999887 58999999 998 6999999999999999988765 678899999999988876
Q ss_pred CCC-----hhhHHHHHHHHHHHH
Q 003743 440 GYD-----AYDLEILVDRTVHAA 457 (799)
Q Consensus 440 g~s-----~~dl~~lv~~A~~~a 457 (799)
+|. +.....+++.|+..+
T Consensus 363 ~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 363 RYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp HSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhccCcCCcHHHHHHHHHHHHH
Confidence 554 345667777766443
No 125
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.57 E-value=1.8e-14 Score=151.23 Aligned_cols=206 Identities=15% Similarity=0.107 Sum_probs=129.4
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
.+|++++|....+..+.+.+..+.. .+.++||+||||||||++|+++++.+.... .+++.++|+
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~ 66 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-------------LDKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCA 66 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGG
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecC
Confidence 3678899999999999888866543 245799999999999999999999875322 568889998
Q ss_pred cccccchh---------hHHHHH---HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 003743 296 RLSLEKGP---------IIRQAL---SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 363 (799)
Q Consensus 296 ~l~~~~~~---------~~~~~l---~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~ 363 (799)
.+...... ...... ...+.. ..+++|||||+|.+.. .....|+..++...
T Consensus 67 ~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~---------------~~q~~Ll~~l~~~~ 128 (265)
T 2bjv_A 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM---------------MVQEKLLRVIEYGE 128 (265)
T ss_dssp GSCHHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH---------------HHHHHHHHHHHHCE
T ss_pred CCChhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH---------------HHHHHHHHHHHhCC
Confidence 86421110 000000 011111 3467999999999862 34555666666431
Q ss_pred c--ccCCccCCCCEEEEEecCCC-------CccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh----ccc---
Q 003743 364 E--KRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSL--- 424 (799)
Q Consensus 364 ~--~~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~----~~~--- 424 (799)
- .........++.+|+|||.. ..++++|.+ ||. ..+.+|++.. ++...+++.++.. .+.
T Consensus 129 ~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~ 206 (265)
T 2bjv_A 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLF 206 (265)
T ss_dssp ECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred eecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 0 00000111247888888874 246788888 885 4677777765 5666666655432 332
Q ss_pred -CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 425 -ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 425 -~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
.+++++++.+.......+.++|.++++.++..+
T Consensus 207 ~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 207 PGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 578999999987765567889999998877544
No 126
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.56 E-value=5.8e-14 Score=152.43 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=140.0
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+..+..++|.+..++.+...+.. ++++||+||||||||++|+++|+.++ .++..++|
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~-----------------~~~vll~G~pGtGKT~la~~la~~~~------~~~~~i~~ 79 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT-----------------GGHILLEGVPGLAKTLSVNTLAKTMD------LDFHRIQF 79 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH-----------------TCCEEEESCCCHHHHHHHHHHHHHTT------CCEEEEEC
T ss_pred HHhccceeCcHHHHHHHHHHHHc-----------------CCeEEEECCCCCcHHHHHHHHHHHhC------CCeEEEec
Confidence 34456788888777665554321 24799999999999999999999987 55666666
Q ss_pred cc------ccccchhhHHHHHHHHHHHHHhcC---CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003743 295 SR------LSLEKGPIIRQALSNFISEALDHA---PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 365 (799)
Q Consensus 295 s~------l~~~~~~~~~~~l~~~~~~a~~~~---p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~ 365 (799)
.. +.+...... ....+ ..... .+||||||+|.+.+ .....|+..++...-.
T Consensus 80 ~~~~~~~~l~g~~~~~~---~~~~~--~~~~g~l~~~vl~iDEi~~~~~---------------~~~~~Ll~~l~~~~~~ 139 (331)
T 2r44_A 80 TPDLLPSDLIGTMIYNQ---HKGNF--EVKKGPVFSNFILADEVNRSPA---------------KVQSALLECMQEKQVT 139 (331)
T ss_dssp CTTCCHHHHHEEEEEET---TTTEE--EEEECTTCSSEEEEETGGGSCH---------------HHHHHHHHHHHHSEEE
T ss_pred CCCCChhhcCCceeecC---CCCce--EeccCcccccEEEEEccccCCH---------------HHHHHHHHHHhcCcee
Confidence 31 111000000 00000 00012 36999999999752 4556667777653211
Q ss_pred cC--CccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhc----------------
Q 003743 366 RK--SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---------------- 422 (799)
Q Consensus 366 ~~--~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~---------------- 422 (799)
.. ......++++|+|+|+.+ .+++++++ ||..++.+++|+.+++.+|++..+...
T Consensus 140 ~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 217 (331)
T 2r44_A 140 IGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLE 217 (331)
T ss_dssp ETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHH
T ss_pred eCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHH
Confidence 00 011123578888988654 38999999 999889999999999999999877542
Q ss_pred ------ccCCCHHHHHHHHhhc-------------------CCCChhhHHHHHHHHHHHHhcccccCCCcccccccccce
Q 003743 423 ------SLECSDEILLDVASKC-------------------DGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLV 477 (799)
Q Consensus 423 ------~~~~~~~~l~~la~~~-------------------~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~ 477 (799)
++.++++++++++... .|.+++.+..+++.|...|.-+ ....++
T Consensus 218 ~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-----------g~~~v~ 286 (331)
T 2r44_A 218 IRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-----------NRDYVL 286 (331)
T ss_dssp HHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-----------TCSBCC
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-----------CCCCCC
Confidence 5667888887776543 1457888888777765444322 223467
Q ss_pred ecccchhcccc
Q 003743 478 RDDFSQAMHEF 488 (799)
Q Consensus 478 ~edf~~al~~~ 488 (799)
.+|+..++..+
T Consensus 287 ~~dv~~~~~~v 297 (331)
T 2r44_A 287 PEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 127
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=3.8e-14 Score=153.00 Aligned_cols=177 Identities=18% Similarity=0.236 Sum_probs=125.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC-----CeEEEEecc
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGP 577 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~-----~~~i~i~~~ 577 (799)
+.+..|++++|.+++++.+...+... ...++||+||||||||++|+++++.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 34567899999999999998876531 123699999999999999999999863 358888877
Q ss_pred chhhhhhcccHHHHHHHHHHh--HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC
Q 003743 578 ELLNKYIGASEQAVRDIFSKA--TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 655 (799)
Q Consensus 578 ~l~~~~~g~se~~i~~~f~~a--~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~ 655 (799)
+..+. ......+....... ....+.||+|||+|.+. ....+.|+..|+. ....+.+|++||.+
T Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 86 DERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEM--FSSNVRFILSCNYS 150 (327)
T ss_dssp CHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHH--TTTTEEEEEEESCG
T ss_pred ccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCCc
Confidence 64321 11111222221111 11457899999999983 3456677777763 34457777789999
Q ss_pred CccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCC
Q 003743 656 DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 710 (799)
Q Consensus 656 ~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 710 (799)
+.+.+++.+ |+. .+.|++|+.++..++++.++...++. .+..++.|+..+.|
T Consensus 151 ~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 151 SKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp GGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred cccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 999999998 776 78999999999999999888765542 33345666666654
No 128
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=7.7e-14 Score=150.29 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=125.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccc
Q 003743 504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPE 578 (799)
Q Consensus 504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~ 578 (799)
.+..+++++|.+.+.+.+...+... . ..++||+||||||||++|+++++.+ +.+++.+++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDG------------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSC------------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcC------------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 4567889999999999988876531 1 1249999999999999999999985 45688888766
Q ss_pred hhhhhhcccHHHHHHHHHHhH-------hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe
Q 003743 579 LLNKYIGASEQAVRDIFSKAT-------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 579 l~~~~~g~se~~i~~~f~~a~-------~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
.. ....+++++.... .+.+.||+|||+|.+.. ...+.|+..++. ....+.+|.+
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~--~~~~~~~il~ 143 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMEL--YSNSTRFAFA 143 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHH--TTTTEEEEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhc--cCCCceEEEE
Confidence 32 2344555555443 33478999999999842 345566666653 3355677778
Q ss_pred cCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCC
Q 003743 652 TSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 710 (799)
Q Consensus 652 tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 710 (799)
||.+..+.+++.+ |+. .+.|++|+.+++.++++.++...++. .+...+.++..+.|
T Consensus 144 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 144 CNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 200 (323)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred eCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999999999998 664 88999999999999999887654433 23345677777764
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.55 E-value=1.1e-14 Score=143.22 Aligned_cols=151 Identities=25% Similarity=0.339 Sum_probs=111.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----------CCeEEEEe
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 575 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----------~~~~i~i~ 575 (799)
..++++.|.+...+.+.+.+.. ....+++|+||||||||++|+++++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4678889998888887776643 224589999999999999999999986 78899999
Q ss_pred ccchhh--hhhcccHHHHHHHHHHhHhc-CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEec
Q 003743 576 GPELLN--KYIGASEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 652 (799)
Q Consensus 576 ~~~l~~--~~~g~se~~i~~~f~~a~~~-~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~tt 652 (799)
+..+.. .+.|.....+..++..+... .|.||||||+|.+.+.+.... ....+.+.+...++ ...+++|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~----~~~~~ii~~~ 159 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLA----RGELRCIGAT 159 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHH----TTCSCEEEEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHh----cCCeeEEEec
Confidence 887753 34556666778888777554 688999999999976543111 11223344444443 3457788888
Q ss_pred CCCC-----ccChhhcCCCCcceeeecCCCC
Q 003743 653 SRPD-----LLDAALLRPGRLDRLLFCDFPS 678 (799)
Q Consensus 653 n~~~-----~ld~al~r~gRf~~~i~~~~p~ 678 (799)
|.+. .+|+++++ ||.. +++++|+
T Consensus 160 ~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 160 TVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 8775 58999999 9985 8999885
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=1.6e-13 Score=151.93 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=150.7
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEeccchhhh--
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNK-- 582 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~~l~~~-- 582 (799)
+++.|.+...+.+...+...... .....++++|+||||||||+++++++..+ +..++.+++....+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~-------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHH
Confidence 67889998888888776532110 11111279999999999999999999988 678999997654321
Q ss_pred -------h-------hcccHHHHH-HHHHHhH-hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccc--cC
Q 003743 583 -------Y-------IGASEQAVR-DIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LT 644 (799)
Q Consensus 583 -------~-------~g~se~~i~-~~f~~a~-~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~--~~ 644 (799)
. .|.+...+. .+..... ...|.||||||+|.+ ....+..|+..++.... ..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~~~~~ 158 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADKLGAF 158 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHHHSSC
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCCCCcC
Confidence 0 121222222 2222222 355889999999998 24567777777764432 14
Q ss_pred cEEEEEecCCC---CccChhhcCCCCcce-eeecCCCCHHHHHHHHHHHHccC---CCCCcccHHHHHHHCCC-------
Q 003743 645 GVFVFAATSRP---DLLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRKL---PLADDVDLEAIAHMTEG------- 710 (799)
Q Consensus 645 ~vlvi~ttn~~---~~ld~al~r~gRf~~-~i~~~~p~~~~r~~Il~~~~~~~---~~~~~~~~~~la~~~~g------- 710 (799)
++.||++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+... ....+..++.++..+.+
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 236 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred CEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCC
Confidence 78888888888 558888887 8775 78999999999999998887641 12233446777777731
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcCCCCC
Q 003743 711 -FSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVS 763 (799)
Q Consensus 711 -~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~~~~~ 763 (799)
-..+.+.++|+.|...|..+ +...|+.+++..++........
T Consensus 237 ~G~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~~~~~~~~~~~ 279 (389)
T 1fnn_A 237 RGDARLAIDILYRSAYAAQQN-----------GRKHIAPEDVRKSSKEVLFGIS 279 (389)
T ss_dssp SCCHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHHSCCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHh-----------CCCCcCHHHHHHHHHHHhhhhH
Confidence 24466667777766555332 2346899999988887665443
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=6.7e-14 Score=154.40 Aligned_cols=228 Identities=18% Similarity=0.195 Sum_probs=147.2
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
.++.++|.+..++.+.+.+...+. -..++.++|+||||||||++++++++.+.........+++++|..
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~-----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR-----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG-----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 347889999888887776544332 134567999999999999999999998842210016778888754
Q ss_pred cccc-----------------chhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 003743 297 LSLE-----------------KGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 358 (799)
Q Consensus 297 l~~~-----------------~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ 358 (799)
.... ........+..++..+.. ..|.||+|||+|.+...... ..+..+...
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-----------~~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-----------DILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-----------THHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-----------HHHHHHhhc
Confidence 3210 000122223333333333 33889999999999732111 234445555
Q ss_pred HHHhccccCCccCCCCEEEEEecCCC---CccchhhhccCcee-EEEeccCCCHHHHHHHHHHHhhhc--ccCCCHHHHH
Q 003743 359 MDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRR--SLECSDEILL 432 (799)
Q Consensus 359 ld~~~~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf~-~~i~~~~p~~~er~~Il~~~l~~~--~~~~~~~~l~ 432 (799)
++.... .++.+|+++|.+ +.+++.+.+ ||. ..+.+++++.++..+++...+... ...+++++++
T Consensus 156 ~~~~~~--------~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~ 225 (386)
T 2qby_A 156 NSEVNK--------SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIK 225 (386)
T ss_dssp HHSCCC----------EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHH
T ss_pred hhhcCC--------CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHH
Confidence 543311 247888888876 467788888 664 489999999999999999877643 3567889999
Q ss_pred HHHhhcCC--CChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 433 DVASKCDG--YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 433 ~la~~~~g--~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
.++..+.. .+++.+..+++.+...+... ....++.+++..++..
T Consensus 226 ~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~-----------~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 226 LCAALAAREHGDARRALDLLRVSGEIAERM-----------KDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHH
Confidence 98888761 35677777888776554321 1234666666655543
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=6.1e-14 Score=153.51 Aligned_cols=200 Identities=20% Similarity=0.282 Sum_probs=134.2
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhc-CCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC-ce
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLL-SPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DL 285 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l-~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~-~~ 285 (799)
.|.....+..|++++|.+.+++.+.+ ++ ... ..+ +++|+||||||||++++++++.+.... ..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~----~~~~~~----------~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~ 67 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKS----LSDQPR----------DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYR 67 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHT----TTTCTT----------CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHH----HHhhCC----------CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCe
Confidence 57777778899999998876654443 33 211 122 399999999999999999999653211 00
Q ss_pred ----------------------eeEEEEEecccccccchhhHHHHHHHHHHHHH--------------hcCCcEEEEccc
Q 003743 286 ----------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL--------------DHAPSIVIFDNL 329 (799)
Q Consensus 286 ----------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~--------------~~~p~IL~IDEi 329 (799)
...++.++.+........ .++..+..+. ...|.|++|||+
T Consensus 68 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~ 143 (354)
T 1sxj_E 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRI----VIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEA 143 (354)
T ss_dssp ------------------CCEECSSEEEECCC----CCHH----HHHHHHHHHTTTTC------------CCEEEEEECT
T ss_pred EEecceeecccccccceeeeecccceEEecHhhcCCcchH----HHHHHHHHHHHhccccccccccccCCCCeEEEEeCc
Confidence 001233333322111111 1233333221 235779999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHH
Q 003743 330 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAAS 409 (799)
Q Consensus 330 D~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~ 409 (799)
+.+.. ...+.|+..++.... ...+|.+|+.++.+.+++++ |+ ..+.|++|+.+
T Consensus 144 ~~L~~---------------~~~~~L~~~le~~~~---------~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~ 196 (354)
T 1sxj_E 144 NSLTK---------------DAQAALRRTMEKYSK---------NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDS 196 (354)
T ss_dssp TSSCH---------------HHHHHHHHHHHHSTT---------TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHH
T ss_pred cccCH---------------HHHHHHHHHHHhhcC---------CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHH
Confidence 99641 344556666665432 36788888999999999999 87 58999999999
Q ss_pred HHHHHHHHHhhhcccCCC-HHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 410 ERKAILEHEIQRRSLECS-DEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 410 er~~Il~~~l~~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
++.++++..+...++.++ ++.++.++..+.| +.+++.++++.+.
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 197 EISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp HHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999998888889 9999999988866 5666666666554
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=1.6e-13 Score=151.84 Aligned_cols=226 Identities=14% Similarity=0.074 Sum_probs=149.5
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l 297 (799)
++.++|.+..++.+.+.+...+... .+.+++++|+||||||||++++++++.+.... ...+++++|...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~---------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~ 84 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNP---------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIY 84 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHST---------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccC
Confidence 4789999999999988886654311 11223799999999999999999999985321 156788887654
Q ss_pred cccc-----------------hhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 003743 298 SLEK-----------------GPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 359 (799)
Q Consensus 298 ~~~~-----------------~~~~~~~l~~~~~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~l 359 (799)
.... .......+..+...+. ...|.||+|||+|.+. ......|...+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRLG 149 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHHH
Confidence 3210 0001111112222221 2457899999999982 14455565655
Q ss_pred HHhccccCCccCCCCEEEEEecCCC---CccchhhhccCceeE-EEeccCCCHHHHHHHHHHHhhh--cccCCCHHHHHH
Q 003743 360 DEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQR--RSLECSDEILLD 433 (799)
Q Consensus 360 d~~~~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf~~-~i~~~~p~~~er~~Il~~~l~~--~~~~~~~~~l~~ 433 (799)
+...... ..++.+|+++|.+ +.+++.+.+ ||.. .+.|++++.++..+++...+.. ....+++++++.
T Consensus 150 ~~~~~~~-----~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 222 (389)
T 1fnn_A 150 QEADKLG-----AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQM 222 (389)
T ss_dssp TCHHHHS-----SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHH
T ss_pred HhCCCCC-----cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 4433200 0147888888887 667888888 7764 7999999999999999988765 234678999999
Q ss_pred HHhhcC--------CCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhccc
Q 003743 434 VASKCD--------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 487 (799)
Q Consensus 434 la~~~~--------g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~ 487 (799)
++..+. +.+++.+..+++.+...+..+ ....++.+++..++..
T Consensus 223 l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 223 IADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN-----------GRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh-----------CCCCcCHHHHHHHHHH
Confidence 999984 236777888888877665432 1134556666555443
No 134
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.54 E-value=9.6e-14 Score=152.88 Aligned_cols=186 Identities=22% Similarity=0.259 Sum_probs=133.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC-------------
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 569 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~------------- 569 (799)
+.+..|++++|.+.+.+.+...+... ..+..+||+||||||||++|+++|+.++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34567889999999999988877521 12235899999999999999999987753
Q ss_pred -----------eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHH
Q 003743 570 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 634 (799)
Q Consensus 570 -----------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll 634 (799)
.++.+++..- .....++.++..+. .+.+.||+|||+|.+. ....+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll 140 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALL 140 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHH
T ss_pred HHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHH
Confidence 1233333210 11234566666654 2457899999999983 34667788
Q ss_pred hhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcH
Q 003743 635 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 713 (799)
Q Consensus 635 ~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 713 (799)
..++. ....+++|++|+.+..+.+++.+ |+ ..+.|++|+.++..++++.+++..++. .+..++.++..+.| +.
T Consensus 141 ~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 141 KTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp HHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred HHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 77763 34567778888888899999998 66 688999999999999999888765543 33346778888875 55
Q ss_pred HHHHHHHHHH
Q 003743 714 ADLQALLSDA 723 (799)
Q Consensus 714 ~di~~~~~~a 723 (799)
+++.+++..+
T Consensus 215 r~~~~~l~~~ 224 (373)
T 1jr3_A 215 RDALSLTDQA 224 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 135
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.53 E-value=8.5e-14 Score=151.98 Aligned_cols=228 Identities=16% Similarity=0.185 Sum_probs=137.0
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCce-eeEEEEEe
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVC 293 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~-~~~~~~v~ 293 (799)
+.+|++++|.+..+..+.. ..+. +.+.++||+||||||||++|+++++.+...... ..+ ++
T Consensus 20 ~~~f~~i~G~~~~~~~l~~---~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~ 81 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLL---TAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VS 81 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHH---HHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TC
T ss_pred CCCchhccChHHHHHHHHH---HhhC------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccc---cc
Confidence 4568899999876553221 1111 123469999999999999999999988621000 000 11
Q ss_pred ccccc-------------------------ccchhhHHHH--HHHHHHHH---------HhcCCcEEEEccccccccCCC
Q 003743 294 CSRLS-------------------------LEKGPIIRQA--LSNFISEA---------LDHAPSIVIFDNLDSIISSSS 337 (799)
Q Consensus 294 ~s~l~-------------------------~~~~~~~~~~--l~~~~~~a---------~~~~p~IL~IDEiD~l~~~~~ 337 (799)
|.... +......... +...+... ....+++|||||+|.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--- 158 (350)
T 1g8p_A 82 SPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--- 158 (350)
T ss_dssp CSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---
T ss_pred ccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---
Confidence 11110 0000000000 11111111 112467999999999852
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCCCC-ccchhhhccCceeEEEeccCC-CHHHH
Q 003743 338 DPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPAP-AASER 411 (799)
Q Consensus 338 ~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~~-~ld~aL~r~gRf~~~i~~~~p-~~~er 411 (799)
.....|+..++... ..........++++|+|+|..+ .++++|++ ||+.++.+++| +.+++
T Consensus 159 ------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~ 224 (350)
T 1g8p_A 159 ------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETR 224 (350)
T ss_dssp ------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHH
T ss_pred ------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHH
Confidence 34556666666521 1111111112589999999854 89999999 99988999999 56677
Q ss_pred HHHHHHHh-----------------------------hhcccCCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHHHhc
Q 003743 412 KAILEHEI-----------------------------QRRSLECSDEILLDVASKCDGY---DAYDLEILVDRTVHAAVG 459 (799)
Q Consensus 412 ~~Il~~~l-----------------------------~~~~~~~~~~~l~~la~~~~g~---s~~dl~~lv~~A~~~a~~ 459 (799)
.+|++..+ ....+.+++++++.++..+.+. +.+.+..+++.|...|..
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 225 VEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHH
Confidence 78876521 1234578999999988877653 458888888887765543
Q ss_pred ccccCCCcccccccccceecccchhcccc
Q 003743 460 RYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 460 r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
+ ....++.+|+..++..+
T Consensus 305 ~-----------~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 305 E-----------GATAVGRDHLKRVATMA 322 (350)
T ss_dssp T-----------TCSBCCHHHHHHHHHHH
T ss_pred c-----------CCCcCCHHHHHHHHHHH
Confidence 2 12347777877766544
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=8.3e-14 Score=153.63 Aligned_cols=220 Identities=16% Similarity=0.190 Sum_probs=145.5
Q ss_pred CCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC------CCeEEEEeccchhh
Q 003743 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC------SLRFISVKGPELLN 581 (799)
Q Consensus 508 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~------~~~~i~i~~~~l~~ 581 (799)
.++++|.+...+.+...+..... -..+..++|+||||||||++++++++.+ +.+++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 46789999888888776653211 1234589999999999999999999988 88999999764321
Q ss_pred ------h----------hhcccHHH-HHHHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcccc
Q 003743 582 ------K----------YIGASEQA-VRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 643 (799)
Q Consensus 582 ------~----------~~g~se~~-i~~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~ 643 (799)
. ..|.+... ...++..... ..|+||||||++.+.... ...++..++..++.. ..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~~l~~l~~~~~~~-~~ 161 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDDILYKLSRINSEV-NK 161 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CSTHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCHHHHHHhhchhhc-CC
Confidence 1 01222233 4444444443 348999999999986432 134566776666543 34
Q ss_pred CcEEEEEecCCCC---ccChhhcCCCCcc-eeeecCCCCHHHHHHHHHHHHccCC---CCCcccHHHHHHHCC---CCcH
Q 003743 644 TGVFVFAATSRPD---LLDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLP---LADDVDLEAIAHMTE---GFSG 713 (799)
Q Consensus 644 ~~vlvi~ttn~~~---~ld~al~r~gRf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~la~~~~---g~sg 713 (799)
.++.+|++|+.+. .+++.+.+ ||. +.+.|++|+.+++.+|++.++.... ...+...+.++..+. | ..
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~ 238 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DA 238 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CH
T ss_pred CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CH
Confidence 5678888888774 57888887 665 5899999999999999988765321 112233555666655 4 34
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 714 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 714 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
+.+.++|..|...|... +...|+.+++..++...
T Consensus 239 r~~~~ll~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 239 RRALDLLRVSGEIAERM-----------KDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHH
Confidence 45555777665544321 23468899988877654
No 137
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.52 E-value=1.7e-13 Score=150.84 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=139.2
Q ss_pred cCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCcee----
Q 003743 211 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---- 286 (799)
Q Consensus 211 ~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~---- 286 (799)
....+..|++++|.+..++.+.+.+..- ..+..+||+||||||||++++++|+.+.......
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~--------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLG--------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHT--------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhC--------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 3345667889999998888777765321 2244689999999999999999999986321100
Q ss_pred --------------eEEEEEecccccccchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhH
Q 003743 287 --------------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSV 348 (799)
Q Consensus 287 --------------~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~ 348 (799)
..++.++..... ... .++.++..+. ...+.||+|||+|.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-------------- 133 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASRT--KVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------- 133 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCSC--CSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------
T ss_pred cccHHHHHHhccCCCceEEecccccC--CHH----HHHHHHHHHhhccccCCeEEEEEECcchhcH--------------
Confidence 012333332211 111 2344444443 23467999999999852
Q ss_pred HHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCH
Q 003743 349 IALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 428 (799)
Q Consensus 349 ~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~ 428 (799)
...+.|+..++... ..+.+|++|+.+..+.+++.+ |+ ..+.|++|+.++..+++...+...++.+++
T Consensus 134 -~~~~~Ll~~le~~~---------~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~ 200 (373)
T 1jr3_A 134 -HSFNALLKTLEEPP---------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 (373)
T ss_dssp -HHHHHHHHHHHSCC---------SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred -HHHHHHHHHHhcCC---------CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 33455666665422 247888888888889999998 76 489999999999999999999988889999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
+.+..++..+.| +++.+.++++.+.
T Consensus 201 ~a~~~l~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 201 RALQLLARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHSSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 999999999866 6778877777664
No 138
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.52 E-value=5.7e-14 Score=150.53 Aligned_cols=201 Identities=15% Similarity=0.189 Sum_probs=132.7
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 299 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~ 299 (799)
+++|....+..+.+.+..+.. .+.++||+||||||||++|+++++...... .+++.++|+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~-------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~---~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP-------------SDATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALNE 66 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS-------------TTSCEEEESCTTSCHHHHHHHHHHHSSCSS---SCCCEEECSSCCH
T ss_pred CcEECCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCchHHHHHHHHHHhCcccC---CCeEEEeCCCCCh
Confidence 578888889988888866542 345699999999999999999999764322 5678899987643
Q ss_pred cch---------hhHHH---HHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cc
Q 003743 300 EKG---------PIIRQ---ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EK 365 (799)
Q Consensus 300 ~~~---------~~~~~---~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~--~~ 365 (799)
... +.... .....|..+ .+++|||||||.+.. .....|+..++... ..
T Consensus 67 ~l~~~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~---------------~~q~~Ll~~l~~~~~~~~ 128 (304)
T 1ojl_A 67 SLLESELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP---------------LMQVRLLRAIQEREVQRV 128 (304)
T ss_dssp HHHHHHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH---------------HHHHHHHHHHHSSBCCBT
T ss_pred HHHHHHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH---------------HHHHHHHHHHhcCEeeec
Confidence 110 00000 011123332 457999999999852 34556666666432 10
Q ss_pred cCCccCCCCEEEEEecCCC-------CccchhhhccCcee-EEEeccCCC--HHHHHHHHHHHhhhc-------ccCCCH
Q 003743 366 RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR-------SLECSD 428 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~-~~i~~~~p~--~~er~~Il~~~l~~~-------~~~~~~ 428 (799)
........++.+|++||.. ..+++.|.. ||. ..|.+|++. .++...++..++... ...+++
T Consensus 129 g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~ 206 (304)
T 1ojl_A 129 GSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP 206 (304)
T ss_dssp TBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH
T ss_pred CCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH
Confidence 1111112357889999874 235667777 773 457777776 466777777665431 246899
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 429 EILLDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 429 ~~l~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
++++.+.......+.++|.+++++++..
T Consensus 207 ~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 207 QAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp HHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 9999999887566788999999888754
No 139
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=5e-14 Score=138.58 Aligned_cols=159 Identities=16% Similarity=0.266 Sum_probs=107.6
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCc----eeeEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHI 289 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~----~~~~~ 289 (799)
.+..+++++|.+..++.+.+.+.. ..++++||+||||||||++++++++.+..... ...++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~---------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSR---------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS---------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred hccccchhhcchHHHHHHHHHHhC---------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 356788899999887777765421 23567999999999999999999999843110 12567
Q ss_pred EEEeccccc--ccchhhHHHHHHHHHHHHHhc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 003743 290 VFVCCSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366 (799)
Q Consensus 290 ~~v~~s~l~--~~~~~~~~~~l~~~~~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~ 366 (799)
+.+++..+. ....+.....+..++..+... .+.+|+|||+|.+.+.+...... . .+.+.|...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~----~~~~~l~~~~~~----- 150 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--L----DAGNILKPMLAR----- 150 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--C----CTHHHHHHHHHT-----
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--h----HHHHHHHHHHhc-----
Confidence 778776654 223345555666676666544 67899999999997443211111 1 233444444432
Q ss_pred CCccCCCCEEEEEecCCCC-----ccchhhhccCceeEEEeccCCC
Q 003743 367 KSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPA 407 (799)
Q Consensus 367 ~~~~~~~~v~vI~ttn~~~-----~ld~aL~r~gRf~~~i~~~~p~ 407 (799)
..+.+|+++|.++ .+++++.+ ||. .+.++.|+
T Consensus 151 ------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 ------GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ------TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred ------CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 1377888888764 58999999 999 59999885
No 140
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.51 E-value=1.4e-13 Score=173.53 Aligned_cols=160 Identities=15% Similarity=0.088 Sum_probs=98.1
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCC--------cchhhhh------------------cCCCCCceEEEECCCCCc
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPD--------SGLWFST------------------YHLPLPGHILIHGPPGSG 267 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~--------~~~~~~~------------------~g~~~~~~vLL~GppGtG 267 (799)
....|.++.|++..+...++.+...+... .+..|.. -|+|.++.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 34779999999999988887775555210 0222332 235667779999999999
Q ss_pred HHHHHHHHHHHhccCCceeeEEEEEeccccc------------ccchhh----HHHHHHHHHHHHHhcCCcEEEEccccc
Q 003743 268 KTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS------------LEKGPI----IRQALSNFISEALDHAPSIVIFDNLDS 331 (799)
Q Consensus 268 KT~la~alA~~l~~~~~~~~~~~~v~~s~l~------------~~~~~~----~~~~l~~~~~~a~~~~p~IL~IDEiD~ 331 (799)
||+||++++.+..... .+.++++..... ....+. .++.++.++..++...|+++|+|++|+
T Consensus 1095 KT~la~~~~~~~~~~g---~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~a 1171 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREG---KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1171 (1706)
T ss_dssp HHHHHHHHHHHHHHTT---CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred hHHHHHHHHHHhhhcC---CceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHh
Confidence 9999999998775331 345556554432 111122 567788888888888999999999999
Q ss_pred cccCCCCC--CCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCC
Q 003743 332 IISSSSDP--EGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSL 384 (799)
Q Consensus 332 l~~~~~~~--~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~ 384 (799)
|++.+..+ .++.......+++++++..+++..... +|+|| +||+.
T Consensus 1172 l~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~-------~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1172 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS-------NTLLI-FINQI 1218 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT-------TCEEE-EEECE
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHhhhccC-------CeEEE-Eeccc
Confidence 99763211 111112444566777777777755443 36666 66763
No 141
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.51 E-value=6.4e-14 Score=159.11 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=97.5
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC--CeEEEEecc-----chhhh
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGP-----ELLNK 582 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~-----~l~~~ 582 (799)
.+.|.+++++.+...+.. +.++||+||||||||++|+++|..++ .+|..+++. ++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 467888887776654432 24899999999999999999999884 355555543 33332
Q ss_pred hhcccHHHHHHHHHHhHhc---CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc--------ccCcEEEEEe
Q 003743 583 YIGASEQAVRDIFSKATAA---APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------VLTGVFVFAA 651 (799)
Q Consensus 583 ~~g~se~~i~~~f~~a~~~---~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--------~~~~vlvi~t 651 (799)
+.+..... ...|..+..+ .++|||||||+.+ ...+.+.|+..|+.-. .....++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 22221111 2233323222 4679999999876 3567778888875211 1122345667
Q ss_pred cCCCCc---cChhhcCCCCcceeeecCCCCH-HHHHHHHHHHH
Q 003743 652 TSRPDL---LDAALLRPGRLDRLLFCDFPSP-RERLDILKVIS 690 (799)
Q Consensus 652 tn~~~~---ld~al~r~gRf~~~i~~~~p~~-~~r~~Il~~~~ 690 (799)
||.+.. ..+++++ ||...+++|+|+. +++..|++...
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 775332 4468999 9999999999986 77888987654
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=8.5e-13 Score=144.37 Aligned_cols=176 Identities=15% Similarity=0.227 Sum_probs=119.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHh-hccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC-CC----------
Q 003743 502 EGGRSGWDDVGGLTDIQNAIKEMI-ELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SL---------- 569 (799)
Q Consensus 502 ~~~~~~~~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~-~~---------- 569 (799)
++.+..|++++|.+.+.+.+...+ .. + .. .+++|+||||||||++++++|+.+ +.
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 455678999999999988887665 21 1 11 249999999999999999999953 11
Q ss_pred ------------------eEEEEeccchhhhhhcccHHHHHHHHHHhH--------------hcCCeEEEEcccccccCC
Q 003743 570 ------------------RFISVKGPELLNKYIGASEQAVRDIFSKAT--------------AAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 570 ------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a~--------------~~~p~ILfiDEid~l~~~ 617 (799)
.++.+++++.. ......+++.++.+. ...|.||+|||++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~-- 147 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-- 147 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--
Confidence 13333332210 011113455554432 2367899999999962
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA- 696 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~- 696 (799)
....+.++..|+.. ..++.+|.+|+.++.+.+++++ |+ ..+.|++|+.+++.++++..+...++.
T Consensus 148 ---------~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ---------HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ---------HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 34566777777643 3356777788999999999998 77 788999999999999999887755443
Q ss_pred C-cccHHHHHHHCCC
Q 003743 697 D-DVDLEAIAHMTEG 710 (799)
Q Consensus 697 ~-~~~~~~la~~~~g 710 (799)
+ +..++.++..+.|
T Consensus 214 ~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 214 ETKDILKRIAQASNG 228 (354)
T ss_dssp CCSHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHcCC
Confidence 2 3446777777654
No 143
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=7.3e-13 Score=144.33 Aligned_cols=208 Identities=16% Similarity=0.203 Sum_probs=136.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC-----CeEEEEecc
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGP 577 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~-----~~~i~i~~~ 577 (799)
+.+..|+++.|.+.+.+.|...+.. + . ..+++|+||||||||++|+++|+.+. ..++.++++
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE-----------G-K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-----------T-C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc-----------C-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 3456788999999999988877653 1 1 12599999999999999999999863 347777776
Q ss_pred chhhhhhcccHHHHHHHHHHhH------hcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEe
Q 003743 578 ELLNKYIGASEQAVRDIFSKAT------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 578 ~l~~~~~g~se~~i~~~f~~a~------~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
+.. | ...+++.+.... ...+.|++|||+|.+. ....+.|+..|+.. ...+.+|.+
T Consensus 86 ~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~ 146 (340)
T 1sxj_C 86 DDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY--TKNTRFCVL 146 (340)
T ss_dssp SCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred ccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC--CCCeEEEEE
Confidence 531 1 233444333322 1236899999999983 34567788777633 344566677
Q ss_pred cCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Q 003743 652 TSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHE 730 (799)
Q Consensus 652 tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~ 730 (799)
||.+..+.+++++ |+. .+.|++++.++..++++.++...++. .+.....++..+ +++++.+++... .
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s----~G~~r~~~~~l~-----~ 214 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELS----NGDMRRVLNVLQ-----S 214 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHH----TTCHHHHHHHTT-----T
T ss_pred ecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHH-----H
Confidence 8999999999999 765 78899999999999998888544332 222345555544 456665444221 1
Q ss_pred HhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 731 ILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 731 ~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
.. ......+...||.+++.+++..
T Consensus 215 ~~---~~~~~~~~~~it~~~v~~~~~~ 238 (340)
T 1sxj_C 215 CK---ATLDNPDEDEISDDVIYECCGA 238 (340)
T ss_dssp TT---TTTCSSSCCCBCHHHHHHHTTC
T ss_pred HH---HhcCCcccccccHHHHHHHhCC
Confidence 10 0011112236888888777653
No 144
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.45 E-value=6.3e-13 Score=169.22 Aligned_cols=113 Identities=22% Similarity=0.311 Sum_probs=82.8
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchh----hhhhc------------ccHHHHHHHHHHhH
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL----NKYIG------------ASEQAVRDIFSKAT 599 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~----~~~~g------------~se~~i~~~f~~a~ 599 (799)
++.++.+++|+||||||||++|.+++.+. |..+..++..+.. ....| ..++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46677899999999999999999997654 5667777766432 22223 34566777777888
Q ss_pred hcCCeEEEEcccccccCCC---C-CCCCch--hhHHHHHHHhhccCccccCcEEEEEe
Q 003743 600 AAAPCLLFFDEFDSIAPKR---G-HDNTGV--TDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 600 ~~~p~ILfiDEid~l~~~r---~-~~~~~~--~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
..+|++|||||++.+.+.+ + .+.... ..|++++++..|.+.....+++||+|
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 8999999999999988742 1 111222 47888999999988877777777754
No 145
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.45 E-value=1.2e-13 Score=156.96 Aligned_cols=182 Identities=12% Similarity=0.098 Sum_probs=112.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc-----cccccchhhHHHHHHHHHHHHHhc---CCcEEEE
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-----RLSLEKGPIIRQALSNFISEALDH---APSIVIF 326 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s-----~l~~~~~~~~~~~l~~~~~~a~~~---~p~IL~I 326 (799)
+.++||+||||||||++|+++|+.++.. .++..++|. ++.+...+.... -...+..+... .++||||
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~~~~~~t~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~I 115 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYLMTRFSTPEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFL 115 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEE
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhh----hHHHHHHHhcCCHHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeH
Confidence 4589999999999999999999988522 344555553 222211111000 01112111111 4679999
Q ss_pred ccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc-CCccCCCCEEEEEecCCCCc---cchhhhccCceeEEEe
Q 003743 327 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR-KSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFHVQ 402 (799)
Q Consensus 327 DEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~-~~~~~~~~v~vI~ttn~~~~---ld~aL~r~gRf~~~i~ 402 (799)
|||+.+.+ .....|+..|+...-.. .........++|+|||.+.. ..+++.+ ||...+.
T Consensus 116 DEI~r~~~---------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 116 DEIWKAGP---------------AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp ESGGGCCH---------------HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred HhHhhhcH---------------HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 99988742 56677888776432111 11111122356777776322 3468999 9998999
Q ss_pred ccCCCH-HHHHHHHHHHhh-----------------------hcccCCCHHHHHHHHhhc---------CCCChhhHHHH
Q 003743 403 LPAPAA-SERKAILEHEIQ-----------------------RRSLECSDEILLDVASKC---------DGYDAYDLEIL 449 (799)
Q Consensus 403 ~~~p~~-~er~~Il~~~l~-----------------------~~~~~~~~~~l~~la~~~---------~g~s~~dl~~l 449 (799)
+++|+. +++..|+..... ...+.++++++++++... .+.+++.+..+
T Consensus 179 v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~l 258 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKA 258 (500)
T ss_dssp CCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHH
T ss_pred HHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHH
Confidence 999997 778888876542 124567888888777665 47788888888
Q ss_pred HHHHHHHHh
Q 003743 450 VDRTVHAAV 458 (799)
Q Consensus 450 v~~A~~~a~ 458 (799)
++.|...|.
T Consensus 259 lr~A~A~A~ 267 (500)
T 3nbx_X 259 IRLLQASAF 267 (500)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877765554
No 146
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=1.2e-12 Score=142.72 Aligned_cols=188 Identities=16% Similarity=0.216 Sum_probs=130.9
Q ss_pred cCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceee
Q 003743 208 RGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA 287 (799)
Q Consensus 208 ~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~ 287 (799)
.|.....+..+++++|.+.+++.+...+.. | . ..|+||+||||||||++++++|+.+..... ..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-------------g-~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~ 77 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDE-------------G-K-LPHLLFYGPPGTGKTSTIVALAREIYGKNY-SN 77 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-------------T-C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HH
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhc-------------C-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCc-cc
Confidence 355555677899999988777666554431 1 1 124999999999999999999999853221 13
Q ss_pred EEEEEecccccccchhhHHHHHHHHHHHH--HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003743 288 HIVFVCCSRLSLEKGPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 365 (799)
Q Consensus 288 ~~~~v~~s~l~~~~~~~~~~~l~~~~~~a--~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~ 365 (799)
.+..+++++..+ .......+..+.... ....+.|++|||+|.+.. ...+.|+..++....
T Consensus 78 ~~~~~~~~~~~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~~~- 139 (340)
T 1sxj_C 78 MVLELNASDDRG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------AAQNALRRVIERYTK- 139 (340)
T ss_dssp HEEEECTTSCCS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHTTT-
T ss_pred eEEEEcCccccc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhcCCC-
Confidence 456667665322 222222222221110 012367999999999852 234556666665432
Q ss_pred cCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCC
Q 003743 366 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 440 (799)
Q Consensus 366 ~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g 440 (799)
...+|.++|.+..+.+++++ |+. .+.|++++.++..+++...+...++.++++.+..++..+.|
T Consensus 140 --------~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 140 --------NTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp --------TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred --------CeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 36677888999999999999 876 78999999999999999999888888999999999988766
No 147
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.5e-13 Score=160.12 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=103.3
Q ss_pred CCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEE----eccchhhhh-
Q 003743 509 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV----KGPELLNKY- 583 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i----~~~~l~~~~- 583 (799)
..+.|++++++.+...+.. ..+........+...++||+||||||||++|+++|+.++..++.. ++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 4678999888777433321 111101111223445899999999999999999999987665542 222222111
Q ss_pred ----hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-----------ccCcEEE
Q 003743 584 ----IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFV 648 (799)
Q Consensus 584 ----~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-----------~~~~vlv 648 (799)
.|.... ....+..|. .+||||||||++. ....+.|+..|+.-. ...++.|
T Consensus 373 ~~~~~g~~~~-~~G~l~~A~---~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYL-EAGALVLAD---GGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSE-EECHHHHHS---SSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eccccccccc-cCCeeEecC---CCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 111100 011222332 3599999999984 345667777775322 1235789
Q ss_pred EEecCCCC-------------ccChhhcCCCCcce-eeecCCCCHHHHHHHHHHHHcc
Q 003743 649 FAATSRPD-------------LLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRK 692 (799)
Q Consensus 649 i~ttn~~~-------------~ld~al~r~gRf~~-~i~~~~p~~~~r~~Il~~~~~~ 692 (799)
|+|||.+. .+++++++ |||. .+..+.|+.+ ...|.+..+..
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 99999986 79999999 9985 4466777777 88888877654
No 148
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.38 E-value=2.6e-12 Score=134.71 Aligned_cols=192 Identities=19% Similarity=0.171 Sum_probs=111.3
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCC---CeEEEEeccchhhh-
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK- 582 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~---~~~i~i~~~~l~~~- 582 (799)
.|++++|.....+.+.+.+.... ....++||+||||||||++|++++..+. .+++.++|+.+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57778888777777766554321 1235899999999999999999999874 68999999876321
Q ss_pred ----hhcccHHH-------HHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---------c
Q 003743 583 ----YIGASEQA-------VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------V 642 (799)
Q Consensus 583 ----~~g~se~~-------i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~---------~ 642 (799)
..|..... ....|..+ .+.+|||||++.+. ..++..|+..|+... .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCcccc
Confidence 11211110 11233333 24699999999984 345666776665321 1
Q ss_pred cCcEEEEEecCCC-C------ccChhhcCCCCcc-eeeecCCCCH--HHHHHHHHHHHc----cCCCC--CcccHHHHHH
Q 003743 643 LTGVFVFAATSRP-D------LLDAALLRPGRLD-RLLFCDFPSP--RERLDILKVISR----KLPLA--DDVDLEAIAH 706 (799)
Q Consensus 643 ~~~vlvi~ttn~~-~------~ld~al~r~gRf~-~~i~~~~p~~--~~r~~Il~~~~~----~~~~~--~~~~~~~la~ 706 (799)
...+.||+|||.+ . .+++++.+ ||. ..+.+|+... ++...+++.+++ ..+.. ..++.+.+..
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 2346788888874 2 36788887 885 3456666553 455555544432 23332 1344444443
Q ss_pred H---CCCCcHHHHHHHHHHHHH
Q 003743 707 M---TEGFSGADLQALLSDAQL 725 (799)
Q Consensus 707 ~---~~g~sg~di~~~~~~a~~ 725 (799)
. .-....+++++++..+..
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHH
Confidence 3 212234566666665543
No 149
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.35 E-value=2.1e-11 Score=132.39 Aligned_cols=146 Identities=20% Similarity=0.262 Sum_probs=106.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC------------------------eEEEEeccchhhhhhcccHHHHHHHHHHh
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFSKA 598 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~------------------------~~i~i~~~~l~~~~~g~se~~i~~~f~~a 598 (799)
+..+||+||||+|||++|+++|+.+.. .++.+++.+- + .......++++++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHHHH
Confidence 346999999999999999999987642 2444443210 0 012335677777776
Q ss_pred Hh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeec
Q 003743 599 TA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC 674 (799)
Q Consensus 599 ~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~ 674 (799)
.. +.+.|++|||+|.+. ....+.|++.|+ ++..++++|.+||.++.+.+++++ |+ ..+.|
T Consensus 101 ~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lE--ep~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~ 164 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLE--EPPAETWFFLATREPERLLATLRS--RC-RLHYL 164 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHT--SCCTTEEEEEEESCGGGSCHHHHT--TS-EEEEC
T ss_pred hhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHhh--cc-eeeeC
Confidence 43 446899999999983 456788999987 445667888888999999999999 65 47899
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCC
Q 003743 675 DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGF 711 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 711 (799)
++|+.++..++++... .+ ++.....++..+.|.
T Consensus 165 ~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 165 APPPEQYAVTWLSREV---TM-SQDALLAALRLSAGS 197 (334)
T ss_dssp CCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC
Confidence 9999999999998765 22 333456777777653
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.33 E-value=1e-11 Score=134.80 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=109.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCce------------------eeEEEEEecccccccchhhHHHHHHHHHHH
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISE 315 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~ 315 (799)
.+..+||+||||+|||++|+++|+.+...... ...+..++...- +. ....+.++.++..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence 34569999999999999999999998743211 012344443210 00 1111234555555
Q ss_pred HHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhh
Q 003743 316 ALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 391 (799)
Q Consensus 316 a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL 391 (799)
+.. ..+.|++|||+|.+.. ...+.|+..++... ..+++|.+||.++.+.+++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEep~---------~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEEPP---------AETWFFLATREPERLLATL 155 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTSCC---------TTEEEEEEESCGGGSCHHH
T ss_pred HhhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcCCC---------CCeEEEEEeCChHhCcHHH
Confidence 432 3467999999999962 23455666665432 2478888889999999999
Q ss_pred hccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHH
Q 003743 392 TSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 450 (799)
Q Consensus 392 ~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv 450 (799)
++ |+. .+.|++|+.++..+++...+ .++++.+..++..+.| +++....++
T Consensus 156 ~S--Rc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 156 RS--RCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp HT--TSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTT
T ss_pred hh--cce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 99 775 79999999999999988764 5678888889888766 444443333
No 151
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.33 E-value=2.4e-12 Score=137.90 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=110.1
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh----
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK---- 582 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~---- 582 (799)
+++|.....+.+.+.+.... ....++||+||||||||++|++++... +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 35666666666655554321 224589999999999999999999965 678999999876432
Q ss_pred -hhcccH-------HHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc---------ccCc
Q 003743 583 -YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTG 645 (799)
Q Consensus 583 -~~g~se-------~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~---------~~~~ 645 (799)
..|... ......|+.|. .++||||||+.+. ...+..|+..|+... ....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 112110 01223455553 3599999999984 345667777775432 1234
Q ss_pred EEEEEecCCC-------CccChhhcCCCCcc-eeeecCCCC--HHHHHHHHHHHHcc----CCCC-CcccH---HHHHHH
Q 003743 646 VFVFAATSRP-------DLLDAALLRPGRLD-RLLFCDFPS--PRERLDILKVISRK----LPLA-DDVDL---EAIAHM 707 (799)
Q Consensus 646 vlvi~ttn~~-------~~ld~al~r~gRf~-~~i~~~~p~--~~~r~~Il~~~~~~----~~~~-~~~~~---~~la~~ 707 (799)
+.||+|||.+ ..+++.+.. ||. ..|.+|+.. .++...+++.++.. .+.. ..++. +.|..+
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 7788888875 124556666 764 335566655 34555566654432 2211 23443 444444
Q ss_pred CCCCcHHHHHHHHHHHH
Q 003743 708 TEGFSGADLQALLSDAQ 724 (799)
Q Consensus 708 ~~g~sg~di~~~~~~a~ 724 (799)
.-.-+.+++.+++..+.
T Consensus 216 ~wpGnvReL~~~l~~~~ 232 (304)
T 1ojl_A 216 DWPGNIRELENAIERAV 232 (304)
T ss_dssp CCSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 32223455555555444
No 152
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=3.3e-13 Score=157.31 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=87.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEE----EecccccccchhhH-HHH---HHHHHHHHHhcCCcEE
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF----VCCSRLSLEKGPII-RQA---LSNFISEALDHAPSIV 324 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~----v~~s~l~~~~~~~~-~~~---l~~~~~~a~~~~p~IL 324 (799)
+...++||+||||||||++|+++|+.+.. .... .++..+.+...... ... ....+.. ..++|+
T Consensus 325 r~~~~vLL~GppGtGKT~LAr~la~~~~r------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~gil 395 (595)
T 3f9v_A 325 RGDIHILIIGDPGTAKSQMLQFISRVAPR------AVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL---ADGGIA 395 (595)
T ss_dssp CCSCCEEEEESSCCTHHHHHHSSSTTCSC------EECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH---HSSSEE
T ss_pred CCCcceEEECCCchHHHHHHHHHHHhCCC------ceecCCCccccccccceeeeccccccccccCCeeEe---cCCCcE
Confidence 33448999999999999999999998762 1111 12222222111000 000 0001112 245799
Q ss_pred EEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCCccCCCCEEEEEecCCCC-------------cc
Q 003743 325 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSLE-------------KI 387 (799)
Q Consensus 325 ~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~----~~~~~~~~~~v~vI~ttn~~~-------------~l 387 (799)
||||||.+.+ .....|++.|+...- .........++.+|+|||+.. .+
T Consensus 396 ~IDEid~l~~---------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l 460 (595)
T 3f9v_A 396 VIDEIDKMRD---------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINL 460 (595)
T ss_dssp CCTTTTCCCS---------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCS
T ss_pred EeehhhhCCH---------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCC
Confidence 9999999852 456677777775321 011111223578999999976 89
Q ss_pred chhhhccCceeE-EEeccCCCHHHHHHHHHHHhhh
Q 003743 388 PQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQR 421 (799)
Q Consensus 388 d~aL~r~gRf~~-~i~~~~p~~~er~~Il~~~l~~ 421 (799)
+++|++ ||+. .+..+.|+.+ ...|+++.+..
T Consensus 461 ~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 461 PPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 999999 9974 4556666666 77888777654
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=8e-12 Score=133.57 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=106.4
Q ss_pred ChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC------CCeEEEEeccchhhhhhcc
Q 003743 513 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC------SLRFISVKGPELLNKYIGA 586 (799)
Q Consensus 513 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~------~~~~i~i~~~~l~~~~~g~ 586 (799)
|++++.+.|...+... + ..++|||||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 4566667777666532 1 2479999999999999999999863 346777876420 12
Q ss_pred cHHHHHHHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhh
Q 003743 587 SEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAAL 662 (799)
Q Consensus 587 se~~i~~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al 662 (799)
.-..++++++.+.. +...|+||||+|.+. ....+.|++.|+ ++...+++|.+|+.|+.+.|++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALE--EPPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHh--CCCCCeEEEEEECChHhChHHH
Confidence 34567888877753 234799999999983 456788999997 4455677777788899999999
Q ss_pred cCCCCcceeeecCCCCHHHHHHHHHHHH
Q 003743 663 LRPGRLDRLLFCDFPSPRERLDILKVIS 690 (799)
Q Consensus 663 ~r~gRf~~~i~~~~p~~~~r~~Il~~~~ 690 (799)
++ | .+.|++|+.++..++++..+
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99 7 88999999999999998776
No 154
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=8.4e-11 Score=131.00 Aligned_cols=216 Identities=20% Similarity=0.204 Sum_probs=134.4
Q ss_pred cccccCchhHHHHHHHHH-HhhcCCCcchhhhhcCCCCCceEEE--ECCCCCcHHHHHHHHHHHhccCC---ceeeEEEE
Q 003743 218 VSSLSWMGTTASDVINRI-KVLLSPDSGLWFSTYHLPLPGHILI--HGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVF 291 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l-~~~l~~~~~~~~~~~g~~~~~~vLL--~GppGtGKT~la~alA~~l~~~~---~~~~~~~~ 291 (799)
...++|.+..++.+.+.+ ...+... -..++.++| +||||+|||++++.+++.+.... .....+++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~---------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA---------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS---------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC---------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 467899999999888887 6655320 023567999 99999999999999998875310 00145777
Q ss_pred Eecccccccc-----------------hhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 003743 292 VCCSRLSLEK-----------------GPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 353 (799)
Q Consensus 292 v~~s~l~~~~-----------------~~~~~~~l~~~~~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~ 353 (799)
++|....... .......+..+..... ...|.||+|||+|.+...+.. . ...+.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~----~~~l~ 162 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----A----AEDLY 162 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----C----HHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----c----hHHHH
Confidence 8874321100 0001111222222221 245789999999998631100 0 13344
Q ss_pred HHHHHHHHhccccCCccCCCCEEEEEecCCCC---ccc---hhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcc--cC
Q 003743 354 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIP---QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS--LE 425 (799)
Q Consensus 354 ~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~---~ld---~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~--~~ 425 (799)
.+...+....... ...++.+|++++.++ .++ +.+.+ ++...+.+++++.++..+++...+.... ..
T Consensus 163 ~l~~~~~~~~~~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~ 236 (412)
T 1w5s_A 163 TLLRVHEEIPSRD----GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTV 236 (412)
T ss_dssp HHHTHHHHSCCTT----SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS
T ss_pred HHHHHHHhcccCC----CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4444444432000 002478888887654 344 56666 5555699999999999999987765332 34
Q ss_pred CCHHHHHHHHhhcC------CCChhhHHHHHHHHHHHHh
Q 003743 426 CSDEILLDVASKCD------GYDAYDLEILVDRTVHAAV 458 (799)
Q Consensus 426 ~~~~~l~~la~~~~------g~s~~dl~~lv~~A~~~a~ 458 (799)
++++.+..++..+. | +++.+..++..+...+.
T Consensus 237 ~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 237 WEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAE 274 (412)
T ss_dssp CCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHH
Confidence 67888999999888 6 57777788877765543
No 155
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.29 E-value=5.5e-12 Score=160.65 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=84.0
Q ss_pred CCChhHHhhC---CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh----hcc--------cHHH
Q 003743 529 SKFPNIFAQA---PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----IGA--------SEQA 590 (799)
Q Consensus 529 ~~~~~~~~~~---~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~----~g~--------se~~ 590 (799)
...+++-... |+.+..-++|+|+||+|||++|..+|..+ +.++++++..+..... .|. .+..
T Consensus 715 TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~ 794 (2050)
T 3cmu_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSS
T ss_pred cCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCC
Confidence 3444444443 57788889999999999999999998765 4578999887654433 231 1223
Q ss_pred HHHHHHHhHh----cCCeEEEEcccccccC-C----C-CCCCCchhhHHHHHHHhhccCccccCcEEEEEecC
Q 003743 591 VRDIFSKATA----AAPCLLFFDEFDSIAP-K----R-GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 591 i~~~f~~a~~----~~p~ILfiDEid~l~~-~----r-~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
+.+++..++. ..|++||||.+..+.+ . + +........|.+++++..|..+....++.||++.-
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 4455555543 6799999999999986 2 1 11112344667888888888777666777766543
No 156
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.29 E-value=4.9e-12 Score=120.08 Aligned_cols=135 Identities=14% Similarity=0.153 Sum_probs=86.9
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 299 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~ 299 (799)
.++|....+.++++.+..+.. .+.++||+||||||||++|+++++...... .+++ ++|+.+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-------------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~---~~~v-~~~~~~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-------------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQ---GEFV-YRELTPDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-------------CCSCEEEESSTTSSHHHHHHHHHHSSTTTT---SCCE-EEECCTTT
T ss_pred CceeCCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCCCHHHHHHHHHHhCCccC---CCEE-EECCCCCc
Confidence 467888889989888866542 345699999999999999999998764222 4667 89988765
Q ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEE
Q 003743 300 EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVA 379 (799)
Q Consensus 300 ~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ 379 (799)
.. .....+..+ .+++|||||+|.+.. .....|+..+.... .++.+|+
T Consensus 65 ~~------~~~~~~~~a---~~g~l~ldei~~l~~---------------~~q~~Ll~~l~~~~---------~~~~~I~ 111 (145)
T 3n70_A 65 AP------QLNDFIALA---QGGTLVLSHPEHLTR---------------EQQYHLVQLQSQEH---------RPFRLIG 111 (145)
T ss_dssp SS------CHHHHHHHH---TTSCEEEECGGGSCH---------------HHHHHHHHHHHSSS---------CSSCEEE
T ss_pred ch------hhhcHHHHc---CCcEEEEcChHHCCH---------------HHHHHHHHHHhhcC---------CCEEEEE
Confidence 41 123344444 457999999999852 33445555553221 1356788
Q ss_pred ecCCC-C------ccchhhhccCcee-EEEeccCC
Q 003743 380 SAQSL-E------KIPQSLTSSGRFD-FHVQLPAP 406 (799)
Q Consensus 380 ttn~~-~------~ld~aL~r~gRf~-~~i~~~~p 406 (799)
|||.+ + .+.+.|.. |+. ..|.+|+.
T Consensus 112 ~t~~~~~~~~~~~~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 112 IGDTSLVELAASNHIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp EESSCHHHHHHHSCCCHHHHH--HHHHHEEECCCC
T ss_pred ECCcCHHHHHHcCCCCHHHHH--HhcCCEEeCCCC
Confidence 88763 1 23444444 432 24566653
No 157
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.28 E-value=2.5e-12 Score=122.15 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=76.0
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcc
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA 586 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~ 586 (799)
+++|.....+.+.+.+.... ....++||+||||||||++|++++... +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 34555555555555544221 223579999999999999999999987 77899 999886543
Q ss_pred cHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC
Q 003743 587 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 655 (799)
Q Consensus 587 se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~ 655 (799)
......|..+.. ++|||||+|.+. ...+..|+..|.. ....+.+|+|||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l~-----------~~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHLT-----------REQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGSC-----------HHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHCC-----------HHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 234456666644 499999999983 3456677777742 23345677788764
No 158
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.26 E-value=2.2e-12 Score=122.26 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHH
Q 003743 510 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQ 589 (799)
Q Consensus 510 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~ 589 (799)
+++|.....+.+.+.+.... ....++||+||||||||++|++++.... +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 34566666666666654321 1235799999999999999999999888 99999998875433
Q ss_pred HHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC
Q 003743 590 AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 655 (799)
Q Consensus 590 ~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~ 655 (799)
...+|..+.. .+|||||+|.+. ...+..++..|+... ..++.+|+|||.+
T Consensus 67 -~~~~~~~a~~---~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAEG---GVLYVGDIAQYS-----------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTTT---SEEEEEECTTCC-----------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCCC---CeEEEeChHHCC-----------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 4566766653 599999999984 345556666665322 3346677777754
No 159
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.21 E-value=1.5e-11 Score=116.48 Aligned_cols=132 Identities=11% Similarity=0.125 Sum_probs=86.7
Q ss_pred cccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 003743 220 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 299 (799)
Q Consensus 220 ~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~ 299 (799)
+++|.+..++++.+.+..+.. .+.++||+||||||||++|+++++... +++.++|+.+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-------------~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~~ 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-------------RTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYLI 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-------------CSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCCh
Confidence 467888888888888866543 345699999999999999999988654 677888887543
Q ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEE
Q 003743 300 EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVA 379 (799)
Q Consensus 300 ~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ 379 (799)
.. ....+..+ .+++|||||+|.+.. .....|+..++.... .++.+|+
T Consensus 65 ~~-------~~~~~~~a---~~~~l~lDei~~l~~---------------~~q~~Ll~~l~~~~~--------~~~~iI~ 111 (143)
T 3co5_A 65 DM-------PMELLQKA---EGGVLYVGDIAQYSR---------------NIQTGITFIIGKAER--------CRVRVIA 111 (143)
T ss_dssp HC-------HHHHHHHT---TTSEEEEEECTTCCH---------------HHHHHHHHHHHHHTT--------TTCEEEE
T ss_pred Hh-------hhhHHHhC---CCCeEEEeChHHCCH---------------HHHHHHHHHHHhCCC--------CCEEEEE
Confidence 22 33444443 467999999999852 334455566655321 1367788
Q ss_pred ecCCC-Cc----cchhhhccCce-eEEEeccCC
Q 003743 380 SAQSL-EK----IPQSLTSSGRF-DFHVQLPAP 406 (799)
Q Consensus 380 ttn~~-~~----ld~aL~r~gRf-~~~i~~~~p 406 (799)
|||.. +. +++.|.. |+ ...|.+|+.
T Consensus 112 ~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 112 SCSYAAGSDGISCEEKLAG--LFSESVVRIPPL 142 (143)
T ss_dssp EEEECTTTC--CHHHHHHH--HSSSEEEEECCC
T ss_pred ecCCCHHHHHhCccHHHHH--HhcCcEEeCCCC
Confidence 87753 33 4455555 54 345677664
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.21 E-value=2.4e-11 Score=142.37 Aligned_cols=216 Identities=19% Similarity=0.197 Sum_probs=130.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCC---eEEEEeccch
Q 003743 503 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---RFISVKGPEL 579 (799)
Q Consensus 503 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~---~~i~i~~~~l 579 (799)
.++..++++.|.+.+++.+...+.. ..+++|+||||||||++|+++|..+.. ..+.+.+...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred ccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 3456788999999999888776652 237999999999999999999998742 2222211110
Q ss_pred h--hhhh------------------------------------------------------cccHHHHHHHHHH------
Q 003743 580 L--NKYI------------------------------------------------------GASEQAVRDIFSK------ 597 (799)
Q Consensus 580 ~--~~~~------------------------------------------------------g~se~~i~~~f~~------ 597 (799)
. ...+ .........+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 0 0000 0000001111110
Q ss_pred -----------------hHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcc-------------------
Q 003743 598 -----------------ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE------------------- 641 (799)
Q Consensus 598 -----------------a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~------------------- 641 (799)
.....+.+|||||++.+. ..+.+.|+..|+.-.
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~ 248 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEP 248 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSC
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCc
Confidence 011234599999999983 346667776665211
Q ss_pred ccCcEEEEEecCCC--CccChhhcCCCCcc---eeeecCCC---CHHHHHHHHHHHHccCC---CCCccc---HHHHHHH
Q 003743 642 VLTGVFVFAATSRP--DLLDAALLRPGRLD---RLLFCDFP---SPRERLDILKVISRKLP---LADDVD---LEAIAHM 707 (799)
Q Consensus 642 ~~~~vlvi~ttn~~--~~ld~al~r~gRf~---~~i~~~~p---~~~~r~~Il~~~~~~~~---~~~~~~---~~~la~~ 707 (799)
....+.||+|||.. +.++++|++ ||. ..+.|+.. ..+....+++.+.+... ....++ +..|...
T Consensus 249 ~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 249 VPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp EECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred cceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 11257788999976 569999999 886 45666542 45556666655443221 112233 3444443
Q ss_pred C---CCC------cHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 708 T---EGF------SGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 708 ~---~g~------sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
. .|. +.+++.++++.|...|..+ ....|+.+|+.+|+..
T Consensus 327 ~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~-----------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 327 AQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKK-----------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHTTCSTTEEECCHHHHHHHHHHHHHHHHHT-----------TCSSBCHHHHHHHHHH
T ss_pred HhhhhccccccccCHHHHHHHHHHHHHHHHhc-----------CcccccHHHHHHHHHh
Confidence 2 443 5789999999876555322 2357999999999954
No 161
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.19 E-value=5.3e-10 Score=124.48 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=136.7
Q ss_pred CCCCChHHHHHHHHHHh-hccCCChhHHhhCCCCCCCceee--ecCCCCcHHHHHHHHHHhC---------CCeEEEEec
Q 003743 509 DDVGGLTDIQNAIKEMI-ELPSKFPNIFAQAPLRLRSNVLL--YGPPGCGKTHIVGAAAAAC---------SLRFISVKG 576 (799)
Q Consensus 509 ~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~vLL--~GppGtGKT~la~alA~~~---------~~~~i~i~~ 576 (799)
..++|-+...+.|...+ ...... ....+..+++ +||||+|||++++.+++.+ +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~-------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG-------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS-------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC-------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 56788777777777766 421110 0012347889 9999999999999999876 567888886
Q ss_pred cchh------hhh---h-------cccHHH-HHHHHHHh-HhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhcc
Q 003743 577 PELL------NKY---I-------GASEQA-VRDIFSKA-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 638 (799)
Q Consensus 577 ~~l~------~~~---~-------g~se~~-i~~~f~~a-~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld 638 (799)
.... ... + |.+... +..+.... ....|.||+|||+|.+...+. .....+..++..+.
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHHHHH
Confidence 4321 110 1 112222 22222222 235688999999999864311 02345555555554
Q ss_pred Ccc-cc--CcEEEEEecCCCCc---cC---hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCC---CCcccHHHHHH
Q 003743 639 GVE-VL--TGVFVFAATSRPDL---LD---AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPL---ADDVDLEAIAH 706 (799)
Q Consensus 639 ~~~-~~--~~vlvi~ttn~~~~---ld---~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~---~~~~~~~~la~ 706 (799)
... .. .++.+|++|+.++. ++ +.+.+ |+...+.+++++.++..+|++.++..... ..+.....++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 332 12 57888888877653 45 66777 66666999999999999999877653211 22334667777
Q ss_pred HCC------CCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 707 MTE------GFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 707 ~~~------g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
.+. |. ++.+..++..|...|..+ ....++.+++..++...
T Consensus 248 ~~~~~~~~~G~-p~~~~~l~~~a~~~a~~~-----------~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 248 VYGEDKGGDGS-ARRAIVALKMACEMAEAM-----------GRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHCGGGTSCCC-HHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHC
T ss_pred HHHHhccCCCc-HHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 777 64 456666777665544321 12356777776666443
No 162
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.18 E-value=7.7e-10 Score=146.40 Aligned_cols=367 Identities=14% Similarity=0.174 Sum_probs=191.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~ 335 (799)
.+..+.||+|||||.+++.+|+.++ .+++.++|++-... ..+..+|..+.. .+...++|||+++-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lg------r~~~vfnC~~~~d~------~~~g~i~~G~~~-~GaW~cfDEfNrl~~- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLG------RFVLVFCCDEGFDL------QAMSRIFVGLCQ-CGAWGCFDEFNRLEE- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT------CCEEEEECSSCCCH------HHHHHHHHHHHH-HTCEEEEETTTSSCH-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhC------CeEEEEeCCCCCCH------HHHHHHHhhHhh-cCcEEEehhhhcCCH-
Confidence 4467999999999999999999999 78889999873322 124445555442 456899999999842
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccc--------cCCccCCCCEEEEEecCC----CCccchhhhccCceeEEEec
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYGEK--------RKSSCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQL 403 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~--------~~~~~~~~~v~vI~ttn~----~~~ld~aL~r~gRf~~~i~~ 403 (799)
.....+...+..+....... +....-.....+|+|+|+ ...++++|+. ||- .|.+
T Consensus 671 ----------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m 737 (3245)
T 3vkg_A 671 ----------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAM 737 (3245)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEEC
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEE
Confidence 12223333333333332222 111122335788999996 3578999999 886 6999
Q ss_pred cCCCHHHHHHHHHHHhhhcccCCCHHHHH------HHHh------hcCCCChhhHHHHHHHHHHHHhcccccCCCcc--c
Q 003743 404 PAPAASERKAILEHEIQRRSLECSDEILL------DVAS------KCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF--E 469 (799)
Q Consensus 404 ~~p~~~er~~Il~~~l~~~~~~~~~~~l~------~la~------~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~--~ 469 (799)
..|+.+...+|+-. ..|+.-...... .+++ ....|..+.++.++..|. .++|........ .
T Consensus 738 ~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG--~lkr~~~~~~~~~~~ 812 (3245)
T 3vkg_A 738 IKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG--GIKRKCQPPQLPPIT 812 (3245)
T ss_dssp CSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH--HHHHSCCCC------
T ss_pred eCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH--HHHHhhhhhcccccc
Confidence 99999888887642 223322222111 1111 113456677777776654 233322100000 0
Q ss_pred c------cccccceecc--cchhcccc-cccc--------cccccccccCCCCCCCCCCCChHHHHHHHHHHhhcc-CCC
Q 003743 470 K------HIKPTLVRDD--FSQAMHEF-LPVA--------MRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP-SKF 531 (799)
Q Consensus 470 ~------~~~~~l~~ed--f~~al~~~-~p~~--------~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~-~~~ 531 (799)
. .....-..|+ +.+|+.+. .|.. ..-+....|. ..... .....+.+.+.+.+... +..
T Consensus 813 ~~~~~~~~~~~~~~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPg---v~~~~-~~~~~l~~ai~~~~~~~~L~~ 888 (3245)
T 3vkg_A 813 DAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPG---SQLQP-IQMDQLRKKIQEIAKQRHLVT 888 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTT---CCCCC-CCCHHHHHHHHHHHHHTTCCC
T ss_pred cccccccccccccccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCC---CCCCC-CchHHHHHHHHHHHHHcCCcc
Confidence 0 0000000011 11222221 1111 0001111111 11111 12344455555444321 111
Q ss_pred -h-------hHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----CC--eEEEEeccchhh-hhhccc--------H
Q 003743 532 -P-------NIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SL--RFISVKGPELLN-KYIGAS--------E 588 (799)
Q Consensus 532 -~-------~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----~~--~~i~i~~~~l~~-~~~g~s--------e 588 (799)
+ +++.. +..+.|+++.||||+|||++-+.++..+ +. ....+|+..+.. ...|.. +
T Consensus 889 ~~~~v~KviQLye~--~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~D 966 (3245)
T 3vkg_A 889 KQEWVEKILQLHQI--LNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTD 966 (3245)
T ss_dssp CHHHHHHHHHHHHH--HTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEE
T ss_pred CHHHHHHHHHHHHH--HHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeec
Confidence 1 12222 2356789999999999999999998765 22 344566654321 122221 2
Q ss_pred HHHHHHHHHhHh------cCCeEEEEc-ccccccCCCCCCCCchhhHHHHHHHhhccCcc-----------ccCcEEEEE
Q 003743 589 QAVRDIFSKATA------AAPCLLFFD-EFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFA 650 (799)
Q Consensus 589 ~~i~~~f~~a~~------~~p~ILfiD-Eid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~-----------~~~~vlvi~ 650 (799)
..+..+++++.. .....|++| .+|. ..+..|-+.||.-+ -.+.+-+|.
T Consensus 967 Gvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa--------------~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liF 1032 (3245)
T 3vkg_A 967 GLFTATLRRIIDNVRGESTKRHWIIFDGDVDP--------------EWVENLNSLLDDNKLLTLPNGERLALPNNVRVMF 1032 (3245)
T ss_dssp CHHHHHHHHHHTTSSSGGGEEEEEEEESCCCH--------------HHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEE
T ss_pred cHHHHHHHHHHhcccCCCCCceEEEECCCCCH--------------HHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEE
Confidence 345556655421 123588888 3333 23334444444311 123466777
Q ss_pred ecCCCCccChhhcCCCCcceeeecCCC
Q 003743 651 ATSRPDLLDAALLRPGRLDRLLFCDFP 677 (799)
Q Consensus 651 ttn~~~~ld~al~r~gRf~~~i~~~~p 677 (799)
=+.......||..+ |.+ .|+|.+-
T Consensus 1033 Ev~dL~~ASPATVS--RcG-mVy~~~~ 1056 (3245)
T 3vkg_A 1033 EVQDLKYATLATIS--RCG-MVWFSEE 1056 (3245)
T ss_dssp EESCCTTCCHHHHH--TSE-EEECCTT
T ss_pred EeccccccChhhhe--eee-EEEEccc
Confidence 77788888899988 664 5677654
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.14 E-value=7e-10 Score=130.02 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=88.7
Q ss_pred cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC------------CccCCCCEEEEEecCCC--
Q 003743 319 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK------------SSCGIGPIAFVASAQSL-- 384 (799)
Q Consensus 319 ~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~------------~~~~~~~v~vI~ttn~~-- 384 (799)
..+++|||||+|.+.+ .....|+..++...-... ......++.+|++||+.
T Consensus 200 a~~gvL~LDEi~~l~~---------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 200 AHKGVLFIDEIATLSL---------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp TTTSEEEETTGGGSCH---------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cCCCEEEEechhhCCH---------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 3567999999999842 456667777764321100 00012357899999985
Q ss_pred CccchhhhccCcee---EEEeccCC---CHHHHHHHHHHHhhh-----cccCCCHHHHHHHHhhc---CCC------Chh
Q 003743 385 EKIPQSLTSSGRFD---FHVQLPAP---AASERKAILEHEIQR-----RSLECSDEILLDVASKC---DGY------DAY 444 (799)
Q Consensus 385 ~~ld~aL~r~gRf~---~~i~~~~p---~~~er~~Il~~~l~~-----~~~~~~~~~l~~la~~~---~g~------s~~ 444 (799)
+.++++|++ ||. ..+.|+.. +.+....+++.+... ....++++++..+.+.. .|. +.+
T Consensus 265 ~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R 342 (604)
T 3k1j_A 265 DKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLR 342 (604)
T ss_dssp HHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHH
T ss_pred hhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHH
Confidence 679999999 885 56666543 344566666544432 22568899988888754 442 689
Q ss_pred hHHHHHHHHHHHHhcccccCCCcccccccccceecccchhc
Q 003743 445 DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 485 (799)
Q Consensus 445 dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al 485 (799)
++.++++.|...|..+ ....++.+|+..++
T Consensus 343 ~l~~llr~A~~~A~~~-----------~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 343 DLGGIVRAAGDIAVKK-----------GKKYVEREDVIEAV 372 (604)
T ss_dssp HHHHHHHHHHHHHHHT-----------TCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----------CcccccHHHHHHHH
Confidence 9999999887555322 12346666666655
No 164
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.2e-10 Score=124.54 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=92.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHh----cCCcEEEEcccc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLD 330 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~----~~p~IL~IDEiD 330 (799)
..++|||||||+|||++|+++|+.++........+..++.+.- .. ..+.++.++..+.. ....|++|||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~--~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NI--GIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CB--CHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CC--CHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4579999999999999999999875311111134566665421 11 11234555555532 234699999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHH
Q 003743 331 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASE 410 (799)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~e 410 (799)
.+.. ...+.|+..++.... .+.+|.+|+.+..+.+++++ | .+.|++|+.++
T Consensus 93 ~lt~---------------~a~naLLk~LEep~~---------~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~ 143 (305)
T 2gno_A 93 RMTQ---------------QAANAFLKALEEPPE---------YAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKE 143 (305)
T ss_dssp GBCH---------------HHHHHTHHHHHSCCT---------TEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHH
T ss_pred HhCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChHhChHHHHc--e---eEeCCCCCHHH
Confidence 9962 345667777775432 37777778888999999999 7 68999999999
Q ss_pred HHHHHHHHh
Q 003743 411 RKAILEHEI 419 (799)
Q Consensus 411 r~~Il~~~l 419 (799)
..+++...+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998776
No 165
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=99.82 Aligned_cols=78 Identities=29% Similarity=0.439 Sum_probs=71.3
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHH
Q 003743 673 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLK 752 (799)
Q Consensus 673 ~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~ 752 (799)
+-.+|+.++|.+||+.++++.++..++|++.||..|+||||+||.++|++|++.|+++. ...|+.+||.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------~~~I~~~df~ 75 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFE 75 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------CCCCCHHHHH
Confidence 45799999999999999999998899999999999999999999999999999998774 2579999999
Q ss_pred HHHhhcCCC
Q 003743 753 SIASKARPS 761 (799)
Q Consensus 753 ~a~~~~~~~ 761 (799)
.|+..++|.
T Consensus 76 ~Al~~v~p~ 84 (86)
T 2krk_A 76 MAVAKVMQK 84 (86)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHccC
Confidence 999988774
No 166
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.05 E-value=3.6e-10 Score=95.02 Aligned_cols=75 Identities=31% Similarity=0.441 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHH
Q 003743 675 DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSI 754 (799)
Q Consensus 675 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a 754 (799)
|+|+.++|.+||+.++++.++..++|++.|+..++||||+||.++|++|++.|+++. ...|+.+||..|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~d~~~A 69 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFEMA 69 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------CCCCCHHHHHHH
Confidence 689999999999999999998889999999999999999999999999999998772 357999999999
Q ss_pred HhhcCC
Q 003743 755 ASKARP 760 (799)
Q Consensus 755 ~~~~~~ 760 (799)
+.++..
T Consensus 70 l~~v~~ 75 (78)
T 3kw6_A 70 VAKVMQ 75 (78)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 987643
No 167
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.05 E-value=2.8e-10 Score=97.97 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 678 SPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 678 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
+.++|.+||+.++++.++..++|++.||..|+||||+||.++|++|++.|+++.. ..|+.+||..|+.+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------KVATEKDFLKAVDK 70 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------SSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------ccCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999998832 46999999999999
Q ss_pred cCCCCCHHH
Q 003743 758 ARPSVSEAE 766 (799)
Q Consensus 758 ~~~~~~~~~ 766 (799)
+.++...+.
T Consensus 71 v~~~~~~~~ 79 (88)
T 3vlf_B 71 VISGYKKFS 79 (88)
T ss_dssp HTC------
T ss_pred HhcCccccc
Confidence 998776544
No 168
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.03 E-value=1.8e-10 Score=98.15 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhh
Q 003743 678 SPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 757 (799)
Q Consensus 678 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~ 757 (799)
+.++|.+||+.++++.++..++|++.|+..++||||+||.++|++|++.|+++. ...|+.+||..|+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------RYIVLAKDFEKAYKT 70 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------CSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHHH
Confidence 678999999999999998889999999999999999999999999999887552 357999999999999
Q ss_pred cCCCCCHHHHH
Q 003743 758 ARPSVSEAEKL 768 (799)
Q Consensus 758 ~~~~~~~~~~~ 768 (799)
++|+++ ++.+
T Consensus 71 ~~ps~~-~~l~ 80 (83)
T 3aji_B 71 VIKKDE-QEHE 80 (83)
T ss_dssp HCC--------
T ss_pred HccCch-HHHH
Confidence 999988 5544
No 169
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.99 E-value=9.7e-10 Score=121.62 Aligned_cols=204 Identities=13% Similarity=0.140 Sum_probs=128.6
Q ss_pred cccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 003743 218 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 218 ~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l 297 (799)
+..++|....+.++.+.+..+.. ...++||+|++|||||++|++++....... .+++.+||+.+
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~-------------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~---~~fv~v~~~~~ 199 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC-------------AECPVLITGESGVGKEVVARLIHKLSDRSK---EPFVALNVASI 199 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT-------------CCSCEEEECSTTSSHHHHHHHHHHHSTTTT---SCEEEEETTTS
T ss_pred chhhhhccHHhhHHHHHHHHhcC-------------CCCCeEEecCCCcCHHHHHHHHHHhcCCCC---CCeEEEecCCC
Confidence 34677777778888877765432 234589999999999999999998865322 57889999876
Q ss_pred cccch---------hhHHHH---HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-
Q 003743 298 SLEKG---------PIIRQA---LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE- 364 (799)
Q Consensus 298 ~~~~~---------~~~~~~---l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~- 364 (799)
..... |...+. ....|.. ...++||||||+.+.. .....|+..++...-
T Consensus 200 ~~~~~~~elfg~~~g~~tga~~~~~g~~~~---a~~gtlfldei~~l~~---------------~~q~~Ll~~l~~~~~~ 261 (387)
T 1ny5_A 200 PRDIFEAELFGYEKGAFTGAVSSKEGFFEL---ADGGTLFLDEIGELSL---------------EAQAKLLRVIESGKFY 261 (387)
T ss_dssp CHHHHHHHHHCBCTTSSTTCCSCBCCHHHH---TTTSEEEEESGGGCCH---------------HHHHHHHHHHHHSEEC
T ss_pred CHHHHHHHhcCCCCCCCCCcccccCCceee---CCCcEEEEcChhhCCH---------------HHHHHHHHHHhcCcEE
Confidence 43211 000000 0112222 3457999999999962 556667777765221
Q ss_pred -ccCCccCCCCEEEEEecCCC-------CccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhh----cc---cCC
Q 003743 365 -KRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS---LEC 426 (799)
Q Consensus 365 -~~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~----~~---~~~ 426 (799)
.+.......++.+|++||.. ..+.+.|.. |+. ..|.+|+... ++...++..++.. .+ ..+
T Consensus 262 ~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~ 339 (387)
T 1ny5_A 262 RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGF 339 (387)
T ss_dssp CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred eCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 11111112257788998862 123344444 442 3466666643 5666666666543 12 347
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 003743 427 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 457 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 457 (799)
++++++.+..+....+.++|++++++++..+
T Consensus 340 ~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 340 TKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp CHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 8999999998877778899999999988543
No 170
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.90 E-value=4e-09 Score=115.75 Aligned_cols=201 Identities=14% Similarity=0.152 Sum_probs=128.6
Q ss_pred ccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 003743 219 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 298 (799)
Q Consensus 219 ~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~ 298 (799)
..++|......++.+.+..... ....+|++|++||||+.+|+++....+... .++.+||+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~-------------~~~~vli~GesGtGKe~lAr~ih~~s~r~~----~fv~vnc~~~~ 191 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK-------------SKAPVLITGESGTGKEIVARLIHRYSGRKG----AFVDLNCASIP 191 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT-------------SCSCEEEECCTTSSHHHHHHHHHHHHCCCS----CEEEEESSSSC
T ss_pred ccccccchHHHHHHhhhhhhhc-------------cchhheEEeCCCchHHHHHHHHHHhccccC----CcEEEEcccCC
Confidence 3567777777777776654432 233499999999999999999998876332 28899999875
Q ss_pred ccchhh---------HHHH---HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-
Q 003743 299 LEKGPI---------IRQA---LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK- 365 (799)
Q Consensus 299 ~~~~~~---------~~~~---l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~- 365 (799)
...... +.+. -...|.. ...+.||||||+.+.. .....|+..++...-.
T Consensus 192 ~~~~~~~lfg~~~g~~tga~~~~~g~~~~---a~~gtlfldei~~l~~---------------~~Q~~Ll~~l~~~~~~~ 253 (368)
T 3dzd_A 192 QELAESELFGHEKGAFTGALTRKKGKLEL---ADQGTLFLDEVGELDQ---------------RVQAKLLRVLETGSFTR 253 (368)
T ss_dssp TTTHHHHHHEECSCSSSSCCCCEECHHHH---TTTSEEEEETGGGSCH---------------HHHHHHHHHHHHSEECC
T ss_pred hHHHHHHhcCccccccCCcccccCChHhh---cCCCeEEecChhhCCH---------------HHHHHHHHHHHhCCccc
Confidence 432110 0000 0012333 3456899999999962 5666777777653211
Q ss_pred -cCCccCCCCEEEEEecCCC-------CccchhhhccCcee-EEEeccCCCH--HHHHHHHHHHhhhc-------ccCCC
Q 003743 366 -RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQRR-------SLECS 427 (799)
Q Consensus 366 -~~~~~~~~~v~vI~ttn~~-------~~ld~aL~r~gRf~-~~i~~~~p~~--~er~~Il~~~l~~~-------~~~~~ 427 (799)
+......-++.+|++||.. ..+.+.|.. |+. ..|.+|+... ++...++..++... ...++
T Consensus 254 ~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~ 331 (368)
T 3dzd_A 254 LGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELS 331 (368)
T ss_dssp BTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 1111111246788888852 123344544 443 3577887776 67777777766432 24589
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003743 428 DEILLDVASKCDGYDAYDLEILVDRTVHA 456 (799)
Q Consensus 428 ~~~l~~la~~~~g~s~~dl~~lv~~A~~~ 456 (799)
+++++.+..+....+.++|++++++++..
T Consensus 332 ~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 332 EETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 99999999888666889999999988743
No 171
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=4.2e-09 Score=103.35 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=61.9
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhc-cCCceeeEEEEEe
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVC 293 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~-~~~~~~~~~~~v~ 293 (799)
+.+|++++...+..+.+++.+..++. .+.++.+.+++|+||||||||++++++++.+. ... ..+++++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g---~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVH--------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG---IRGYFFD 74 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHH--------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC---CCCCEEE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHH--------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC---CeEEEEE
Confidence 45677777755555556666655543 22344578899999999999999999999985 211 2233455
Q ss_pred cccccccchhhHHH-HHHHHHHHHHhcCCcEEEEcccccc
Q 003743 294 CSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 294 ~s~l~~~~~~~~~~-~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
+.++.......... ....++... ..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 44432211111000 000122222 46789999999754
No 172
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.85 E-value=1.9e-07 Score=101.02 Aligned_cols=190 Identities=14% Similarity=0.133 Sum_probs=116.2
Q ss_pred CccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 216 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 216 ~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
.....++|.+..++.+.+.+.. ++.++|+||+|+|||+|++.+++..+ .++++|.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-----------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--------~~~~~~~ 63 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-----------------YPLTLLLGIRRVGKSSLLRAFLNERP--------GILIDCR 63 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-----------------CSEEEEECCTTSSHHHHHHHHHHHSS--------EEEEEHH
T ss_pred CChHhcCChHHHHHHHHHHHhc-----------------CCeEEEECCCcCCHHHHHHHHHHHcC--------cEEEEee
Confidence 3456788998888877665432 15799999999999999999998753 4455554
Q ss_pred cccc-----cc-----------------------------------hhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 003743 296 RLSL-----EK-----------------------------------GPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 335 (799)
Q Consensus 296 ~l~~-----~~-----------------------------------~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~ 335 (799)
.... .. .......+..+...+....|.+|+|||++.+...
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~ 143 (350)
T 2qen_A 64 ELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFY 143 (350)
T ss_dssp HHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGB
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhcc
Confidence 3210 00 0011112222222222224889999999998621
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccc---------hhhhccCceeEEEeccCC
Q 003743 336 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---------QSLTSSGRFDFHVQLPAP 406 (799)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld---------~aL~r~gRf~~~i~~~~p 406 (799)
... . ...+...|....+... ++.+|.|+.....+. ..+. ||+...+.++++
T Consensus 144 ~~~-----~---~~~~~~~L~~~~~~~~----------~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl 203 (350)
T 2qen_A 144 GSR-----G---GKELLALFAYAYDSLP----------NLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPF 203 (350)
T ss_dssp TTT-----T---THHHHHHHHHHHHHCT----------TEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCC
T ss_pred Ccc-----c---hhhHHHHHHHHHHhcC----------CeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCC
Confidence 000 0 0134455555444421 255565554321111 1122 366668999999
Q ss_pred CHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHH
Q 003743 407 AASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 451 (799)
Q Consensus 407 ~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~ 451 (799)
+.++..+++...+...+..++++.+..+...+.|+ +.-+..++.
T Consensus 204 ~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 204 DKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 99999999998877767778888899999998885 555555543
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.79 E-value=9.4e-09 Score=100.81 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=60.6
Q ss_pred CCCCCCCCC----hHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEec
Q 003743 505 RSGWDDVGG----LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKG 576 (799)
Q Consensus 505 ~~~~~~i~g----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~ 576 (799)
..+|+++.+ ...+.+.+.+++.. .....+.+++|+||||||||+++++++..+ +..++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 345666653 44444555544432 222345689999999999999999999876 667777888
Q ss_pred cchhhhhhcccHH-HHHHHHHHhHhcCCeEEEEcccccc
Q 003743 577 PELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 577 ~~l~~~~~g~se~-~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
.++...+...... ....++.. ...|.+|+|||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 7776543211110 00012222 235789999999854
No 174
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=2.3e-07 Score=100.51 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=109.1
Q ss_pred ccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 003743 217 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 296 (799)
Q Consensus 217 ~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~ 296 (799)
....++|.+..++.+.+ +.. +.++|+||+|+|||+|++.+++.+. ..++++++..
T Consensus 11 ~~~~~~gR~~el~~L~~-----l~~--------------~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-----LRA--------------PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-----TCS--------------SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-----hcC--------------CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchh
Confidence 45667888776665544 320 4799999999999999999999876 3356677654
Q ss_pred cc----ccchh---hH---------------------------------------HHHHHHHHHHHHhc--CCcEEEEcc
Q 003743 297 LS----LEKGP---II---------------------------------------RQALSNFISEALDH--APSIVIFDN 328 (799)
Q Consensus 297 l~----~~~~~---~~---------------------------------------~~~l~~~~~~a~~~--~p~IL~IDE 328 (799)
.. ..... .+ ...+..++...... .|.+|+|||
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe 145 (357)
T 2fna_A 66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDE 145 (357)
T ss_dssp GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEET
T ss_pred hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEEC
Confidence 31 00000 00 01122333333221 388999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccc---------hhhhccCceeE
Q 003743 329 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---------QSLTSSGRFDF 399 (799)
Q Consensus 329 iD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld---------~aL~r~gRf~~ 399 (799)
++.+..... . .+...|....+... ++.+|.|++....+. ..+ .+|+..
T Consensus 146 ~~~~~~~~~----~-------~~~~~l~~~~~~~~----------~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~ 202 (357)
T 2fna_A 146 AQELVKLRG----V-------NLLPALAYAYDNLK----------RIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFS 202 (357)
T ss_dssp GGGGGGCTT----C-------CCHHHHHHHHHHCT----------TEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCE
T ss_pred HHHhhccCc----h-------hHHHHHHHHHHcCC----------CeEEEEEcCchHHHHHHHhccCCCCcc--ccCccc
Confidence 999863100 0 12333333333321 256666655422111 112 236666
Q ss_pred EEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 003743 400 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 452 (799)
Q Consensus 400 ~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 452 (799)
.+.+++++.++..+++...+...+...++. ..+...+.|+ +.-+..++..
T Consensus 203 ~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 203 TVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHHHCSC-HHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHHhCCC-HHHHHHHHHH
Confidence 899999999999999998776555554443 7778888774 5556555443
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=6.8e-09 Score=98.74 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 619 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~ 619 (799)
...++|+||+|+|||+++++++..+ |..++.++..++... +....|.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 4579999999999999999999877 777888888776542 11235789999999886432
Q ss_pred CCCCchhhHHHHHHHhhccCccccCc-EEEEEecCCCCccC--hhhcCCCCcceeeec
Q 003743 620 HDNTGVTDRVVNQFLTELDGVEVLTG-VFVFAATSRPDLLD--AALLRPGRLDRLLFC 674 (799)
Q Consensus 620 ~~~~~~~~r~~~~ll~~ld~~~~~~~-vlvi~ttn~~~~ld--~al~r~gRf~~~i~~ 674 (799)
. ...+...++.....+. ++|+++...|..+. +.+.+ |+..-+.+
T Consensus 99 ------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 99 ------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1 2233333332232323 35554444565443 77877 77644443
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=2.1e-08 Score=95.35 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=46.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
.+..++|+||+|+|||+|++++++.+.... ...++++..++... .....+.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g---~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG---KNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT---CCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 456799999999999999999999885322 34667777766543 112457899999998764
No 177
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.77 E-value=1.6e-09 Score=91.89 Aligned_cols=78 Identities=26% Similarity=0.301 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc-
Q 003743 680 RERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA- 758 (799)
Q Consensus 680 ~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~- 758 (799)
++|.+||+.++++.++..++|++.|+..++||||+||.++|++|++.|+++. ...|+.+||..|+..+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------RYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHHHHH
Confidence 4689999999999988889999999999999999999999999999998773 2479999999999998
Q ss_pred CCCCCHHHHH
Q 003743 759 RPSVSEAEKL 768 (799)
Q Consensus 759 ~~~~~~~~~~ 768 (799)
.++.++++..
T Consensus 70 ~~~~~~~~~~ 79 (82)
T 2dzn_B 70 KTDNTVDKFD 79 (82)
T ss_dssp C---------
T ss_pred cCcCChHHHH
Confidence 4666666554
No 178
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.76 E-value=3.5e-09 Score=112.08 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhCCC--eEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccC
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~~~--~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~ 616 (799)
++.+...++|+||||||||++|..+|...+. .|+.+...+.++.+....+..+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 3445556899999999999999999986443 455553244344343344555556666665544 999999999965
Q ss_pred CCCC-CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhh
Q 003743 617 KRGH-DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAAL 662 (799)
Q Consensus 617 ~r~~-~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al 662 (799)
.... ...+...+.+.+++..|.++....++.+|+++| |...|+++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 4432 111223456677777776665556677888888 55556554
No 179
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.70 E-value=3.3e-08 Score=97.67 Aligned_cols=119 Identities=12% Similarity=0.218 Sum_probs=67.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEE-EecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF-VCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNL 329 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~-v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEi 329 (799)
++|..+++|||||||||||++|.++|+.+. ..++. ++... .. .+..+ ....|++|||+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~------g~i~~fans~s---~f----------~l~~l--~~~kIiiLDEa 112 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ------GAVISFVNSTS---HF----------WLEPL--TDTKVAMLDDA 112 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT------CEECCCCCSSS---CG----------GGGGG--TTCSSEEEEEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC------CCeeeEEeccc---hh----------hhccc--CCCCEEEEECC
Confidence 467778899999999999999999999986 22221 11110 00 01111 22348999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCCC---CccchhhhccCceeEEEe
Q 003743 330 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQ 402 (799)
Q Consensus 330 D~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~~---~~ld~aL~r~gRf~~~i~ 402 (799)
|.-. ...+...+.+.+|+.. .+..........-+|.|||.. +..-+.|.+ |+. .+.
T Consensus 113 d~~~--------------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~ 175 (212)
T 1tue_A 113 TTTC--------------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFE 175 (212)
T ss_dssp CHHH--------------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEE
T ss_pred Cchh--------------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEE
Confidence 8542 1133456677777742 111110111123567777863 222356777 876 677
Q ss_pred ccCCC
Q 003743 403 LPAPA 407 (799)
Q Consensus 403 ~~~p~ 407 (799)
|+.|-
T Consensus 176 F~~~~ 180 (212)
T 1tue_A 176 FPNAF 180 (212)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 77543
No 180
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.65 E-value=3e-07 Score=101.57 Aligned_cols=212 Identities=15% Similarity=0.086 Sum_probs=117.6
Q ss_pred CCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHH-HHhCCCeEEEE-ecc---chhhhhhc
Q 003743 511 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA-AAACSLRFISV-KGP---ELLNKYIG 585 (799)
Q Consensus 511 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~al-A~~~~~~~i~i-~~~---~l~~~~~g 585 (799)
|.|++.+|..|.-.+..... . .+...|+||.|+||| ||.+|+++ +..+....+.. .++ .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCcc--c------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 78888888887665543211 1 222348999999999 99999999 77664433221 111 11100000
Q ss_pred cc-HHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC-------ccccCcEEEEEecCCCC-
Q 003743 586 AS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-------VEVLTGVFVFAATSRPD- 656 (799)
Q Consensus 586 ~s-e~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~-------~~~~~~vlvi~ttn~~~- 656 (799)
.+ ...-...+..|.++ |+|||||+.+ ....+..|+..|+. ..-..++.||||+|...
T Consensus 286 ~tG~~~~~G~l~LAdgG---vl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGG---ILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHTTTS---EEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEcCCC---eeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 00 00001223344444 9999999998 45567777777752 11234688999999865
Q ss_pred ----------ccChhhcCCCCcceee-ecCCCCHHH-------------HHHHHHHHHc--c-CCCCCcccHHHHHH---
Q 003743 657 ----------LLDAALLRPGRLDRLL-FCDFPSPRE-------------RLDILKVISR--K-LPLADDVDLEAIAH--- 706 (799)
Q Consensus 657 ----------~ld~al~r~gRf~~~i-~~~~p~~~~-------------r~~Il~~~~~--~-~~~~~~~~~~~la~--- 706 (799)
.|.+++++ |||..+ ..+.|+.+. ..+++. +++ . .+.-.+...+.|..
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHH
Confidence 68899999 998655 455565433 111111 222 1 11111111111111
Q ss_pred --------------HCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhcC
Q 003743 707 --------------MTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR 759 (799)
Q Consensus 707 --------------~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~~ 759 (799)
..-|.|.+.+..+++-|...|.-+ .+..++.+|+.+|+.-++
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~-----------gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR-----------LSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT-----------TCSEECHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHc-----------CcCCCCHHHHHHHHHHHH
Confidence 234677788888777666555433 235789999988886543
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.65 E-value=2.7e-08 Score=99.31 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=62.2
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
+.+|+++++.......+++.+..++... .. ...+++++|+||||||||++++++++.+.... ..++++++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~ 90 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEY-----EP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIVYV 90 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHC-----CS--SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEEEH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHh-----hh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEh
Confidence 4578888876655555555555444311 00 01237899999999999999999999986432 45666777
Q ss_pred ccccccchhhHH-HHHHHHHHHHHhcCCcEEEEccccccc
Q 003743 295 SRLSLEKGPIIR-QALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 295 s~l~~~~~~~~~-~~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
..+......... ..+..++.... .+.+|+|||++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 654321111000 00112222222 34599999997754
No 182
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.62 E-value=5.7e-08 Score=96.87 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=77.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHh--------CC-CeEEEEeccchhhhhh----------cccHH--HHHHHHHHh--Hhc
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAA--------CS-LRFISVKGPELLNKYI----------GASEQ--AVRDIFSKA--TAA 601 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~--------~~-~~~i~i~~~~l~~~~~----------g~se~--~i~~~f~~a--~~~ 601 (799)
-.|++|+||||||++|..++.. .| .+++..++.++.-... ...+. ....++.-+ ..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 5789999999999998886543 24 5666666665532221 11111 012222221 234
Q ss_pred CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCH
Q 003743 602 APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSP 679 (799)
Q Consensus 602 ~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~ 679 (799)
..+||+|||++.+.+.+..... ..+ ++..+..- +...+-||.+|+.+..|+.++++ |++..+++++|..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e--~~r----ll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSK--IPE----NVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCC--CCH----HHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred CceEEEEEChhhhccCccccch--hHH----HHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 5679999999999766532211 122 44444322 23344556667779999999998 9999998887643
No 183
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.61 E-value=1.2e-07 Score=104.75 Aligned_cols=181 Identities=18% Similarity=0.222 Sum_probs=105.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCC---CeEEEEeccchhhh-----hh--------cccHHHHHHHHHHhHhcCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK-----YI--------GASEQAVRDIFSKATAAAPCLLF 607 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~---~~~i~i~~~~l~~~-----~~--------g~se~~i~~~f~~a~~~~p~ILf 607 (799)
.++|++|++|||||++|+++..... .+|+.++|+.+... .. |... .....|+.|.++ +||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~g---tlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADGG---TLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTTS---EEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCCc---EEE
Confidence 4689999999999999999998764 78999999875321 11 2111 123456666554 999
Q ss_pred EcccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCCCCc-------cChhhcCCCCcc-e
Q 003743 608 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPDL-------LDAALLRPGRLD-R 670 (799)
Q Consensus 608 iDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~~~~-------ld~al~r~gRf~-~ 670 (799)
||||+.+ ...++..|+..|+.-. + ...+-||+|||..-. +.+.+.- |+. .
T Consensus 237 ldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~ 303 (387)
T 1ny5_A 237 LDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVI 303 (387)
T ss_dssp EESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTE
T ss_pred EcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCC
Confidence 9999998 3456777777765311 0 124668888886321 2222222 332 2
Q ss_pred eeecCCCC--HHHHHHHHHHHHc----cCCCC-CcccHHHHHHHC-CCCcH--HHHHHHHHHHHHHHHHHHhcccCCCCC
Q 003743 671 LLFCDFPS--PRERLDILKVISR----KLPLA-DDVDLEAIAHMT-EGFSG--ADLQALLSDAQLSAVHEILNNIDSNEP 740 (799)
Q Consensus 671 ~i~~~~p~--~~~r~~Il~~~~~----~~~~~-~~~~~~~la~~~-~g~sg--~di~~~~~~a~~~a~~~~~~~~~~~~~ 740 (799)
.|++|+.. .++...+++.++. ..+.. ..++.+.+.... ..+.| +++++++..|+..+
T Consensus 304 ~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~------------- 370 (387)
T 1ny5_A 304 EIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS------------- 370 (387)
T ss_dssp EEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC-------------
T ss_pred eecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC-------------
Confidence 34445432 2444455555443 33322 235555554433 22433 46666666554432
Q ss_pred CCCCcccHHHHHHHH
Q 003743 741 GKMPVITDALLKSIA 755 (799)
Q Consensus 741 ~~~~~it~e~l~~a~ 755 (799)
....|+.+|+...+
T Consensus 371 -~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 371 -EGKFIDRGELSCLV 384 (387)
T ss_dssp -CSSEECHHHHHHHC
T ss_pred -CCCcCcHHHCcHhh
Confidence 12368888886543
No 184
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.59 E-value=9.3e-07 Score=95.73 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=108.4
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh------
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------ 580 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~------ 580 (799)
.-..+.|-+...+.|.+ +.. ..++++||+|+|||++++.+++..+..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34567787777777766 431 3799999999999999999999887777788765420
Q ss_pred -hhh-------h------------------c--------c------cHHHHHHHHHHhHhc--CCeEEEEcccccccCCC
Q 003743 581 -NKY-------I------------------G--------A------SEQAVRDIFSKATAA--APCLLFFDEFDSIAPKR 618 (799)
Q Consensus 581 -~~~-------~------------------g--------~------se~~i~~~f~~a~~~--~p~ILfiDEid~l~~~r 618 (799)
..+ + | . ....+..++...... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 000 0 0 0 011233444433332 38999999999986421
Q ss_pred CCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChh-----hc--CCCCcceeeecCCCCHHHHHHHHHHHHc
Q 003743 619 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA-----LL--RPGRLDRLLFCDFPSPRERLDILKVISR 691 (799)
Q Consensus 619 ~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~a-----l~--r~gRf~~~i~~~~p~~~~r~~Il~~~~~ 691 (799)
... ....+..+... ..++.+|.|++....+... .. -.+|+...+.+++.+.++..++++..+.
T Consensus 154 ---~~~-~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 ---GVN-LLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp ---TCC-CHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred ---chh-HHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 011 11222222221 1245555555543222111 00 1236667889999999999999988765
Q ss_pred cCCCCCcccHHHHHHHCCCCcHHHHHHHH
Q 003743 692 KLPLADDVDLEAIAHMTEGFSGADLQALL 720 (799)
Q Consensus 692 ~~~~~~~~~~~~la~~~~g~sg~di~~~~ 720 (799)
..+...+. ...+...+.|+.. -+..++
T Consensus 224 ~~~~~~~~-~~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 224 EADIDFKD-YEVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp HHTCCCCC-HHHHHHHHCSCHH-HHHHHH
T ss_pred HcCCCCCc-HHHHHHHhCCCHH-HHHHHH
Confidence 43333222 3778888887654 344443
No 185
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.58 E-value=4.8e-08 Score=103.40 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=47.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLD 330 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD 330 (799)
|++.++.++|+||||||||+|+.++|...+.. ..++.....+............+..+...+.... +|+||+++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~----VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~ 192 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGK----DKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLK 192 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTT----SCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCC----EEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccc
Confidence 56777789999999999999999999873311 1122221111111111233444444444444333 99999999
Q ss_pred cccc
Q 003743 331 SIIS 334 (799)
Q Consensus 331 ~l~~ 334 (799)
.+..
T Consensus 193 aL~~ 196 (331)
T 2vhj_A 193 NVIG 196 (331)
T ss_dssp TTC-
T ss_pred cccc
Confidence 9864
No 186
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.56 E-value=8.1e-07 Score=98.19 Aligned_cols=190 Identities=17% Similarity=0.087 Sum_probs=106.5
Q ss_pred ceEEEECCCCCcHHHHHHHH-HHHhccCCceeeEEEEEec--c---cccccc---hhhHHHHHHHHHHHHHhcCCcEEEE
Q 003743 256 GHILIHGPPGSGKTSLAKAV-AKSLEHHKDLVAHIVFVCC--S---RLSLEK---GPIIRQALSNFISEALDHAPSIVIF 326 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~al-A~~l~~~~~~~~~~~~v~~--s---~l~~~~---~~~~~~~l~~~~~~a~~~~p~IL~I 326 (799)
-|+||.|+||| ||++++++ ++.+.. .+++.. + .+.+.. .| ..- -...+.. ...+++||
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR-------~~ft~g~~ss~~gLt~s~r~~tG-~~~-~~G~l~L---AdgGvl~l 306 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPR-------GVYVDLRRTELTDLTAVLKEDRG-WAL-RAGAAVL---ADGGILAV 306 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSS-------EEEEEGGGCCHHHHSEEEEESSS-EEE-EECHHHH---TTTSEEEE
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCC-------eEEecCCCCCccCceEEEEcCCC-ccc-CCCeeEE---cCCCeeeh
Confidence 37999999999 99999999 776531 111111 0 011000 00 000 0001111 24579999
Q ss_pred ccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC-----------ccchhhhccC
Q 003743 327 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----------KIPQSLTSSG 395 (799)
Q Consensus 327 DEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~-----------~ld~aL~r~g 395 (799)
|||+.+.+ .....|++.|+...-.-.+..-..++.||+|+|+.+ .|++++++
T Consensus 307 DEIn~~~~---------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD-- 369 (506)
T 3f8t_A 307 DHLEGAPE---------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS-- 369 (506)
T ss_dssp ECCTTCCH---------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--
T ss_pred HhhhhCCH---------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--
Confidence 99999852 567788888876331100112233689999999865 78899999
Q ss_pred ceeEEE-eccCCCHHHH---------HHHHHH---Hhh--hcccCCCHHHHHHHHhh-----------------cCCCCh
Q 003743 396 RFDFHV-QLPAPAASER---------KAILEH---EIQ--RRSLECSDEILLDVASK-----------------CDGYDA 443 (799)
Q Consensus 396 Rf~~~i-~~~~p~~~er---------~~Il~~---~l~--~~~~~~~~~~l~~la~~-----------------~~g~s~ 443 (799)
||+..+ .++.|+.++- .+.++. +++ .....+++++.+++... ..|.++
T Consensus 370 RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSp 449 (506)
T 3f8t_A 370 HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTR 449 (506)
T ss_dssp TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCH
T ss_pred heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccH
Confidence 997654 4555554321 112222 233 11455677765544321 236788
Q ss_pred hhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcc
Q 003743 444 YDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 486 (799)
Q Consensus 444 ~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~ 486 (799)
+.+..+++.|...|.-+ ....++.+|...|+.
T Consensus 450 R~leaLiRlA~A~A~L~-----------gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 450 RQLESVERLAKAHARMR-----------LSDDVEPEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHHHHHHHHHT-----------TCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-----------CcCCCCHHHHHHHHH
Confidence 99999988776555433 224577777776654
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.54 E-value=1.4e-07 Score=94.19 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=48.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhhhccc-HHHHHHHHHHhHhcCCeEEEEccccccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIA 615 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~~g~s-e~~i~~~f~~a~~~~p~ILfiDEid~l~ 615 (799)
.+++|+||||||||++|++++..+ +.+++.++++++...+.... ...+..++..... +.+|||||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 689999999999999999999877 67888899887765433211 0112233333332 3599999997753
No 188
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.54 E-value=2.1e-06 Score=92.65 Aligned_cols=187 Identities=19% Similarity=0.232 Sum_probs=108.2
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh------
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------ 580 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~------ 580 (799)
.-..+.|-+...+.|.+.+.. + ..++++||+|+|||++++.+++..+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 345678888888888776642 1 3799999999999999999999886 6666654321
Q ss_pred ------h---hhhcc---------------------cHHHHHHHHH----HhHhcCCeEEEEcccccccCCCCCCCCchh
Q 003743 581 ------N---KYIGA---------------------SEQAVRDIFS----KATAAAPCLLFFDEFDSIAPKRGHDNTGVT 626 (799)
Q Consensus 581 ------~---~~~g~---------------------se~~i~~~f~----~a~~~~p~ILfiDEid~l~~~r~~~~~~~~ 626 (799)
. ..++. ....+..++. .+....|.+|+|||++.+..... ...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RGG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cch
Confidence 0 00000 0011222222 22223489999999999854100 001
Q ss_pred hHHHHHHHhhccCccccCcEEEEEecCCCCccC---------hhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCC-
Q 003743 627 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD---------AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA- 696 (799)
Q Consensus 627 ~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld---------~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~- 696 (799)
..+...+...++. ..++.+|.|+.....+. ..+. +|+...+.+++.+.++..++++..+...+..
T Consensus 149 ~~~~~~L~~~~~~---~~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 149 KELLALFAYAYDS---LPNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223 (350)
T ss_dssp HHHHHHHHHHHHH---CTTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred hhHHHHHHHHHHh---cCCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2233333332322 13455555544321111 1122 3666788999999999999998876654432
Q ss_pred CcccHHHHHHHCCCCcHHHHHHHH
Q 003743 697 DDVDLEAIAHMTEGFSGADLQALL 720 (799)
Q Consensus 697 ~~~~~~~la~~~~g~sg~di~~~~ 720 (799)
.+.....+...+.|+.. -+..++
T Consensus 224 ~~~~~~~i~~~tgG~P~-~l~~~~ 246 (350)
T 2qen_A 224 PENEIEEAVELLDGIPG-WLVVFG 246 (350)
T ss_dssp CHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred CHHHHHHHHHHhCCCHH-HHHHHH
Confidence 33346677788887653 344443
No 189
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.53 E-value=5.8e-08 Score=96.80 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=75.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc-----cCCceeeEEEEEecccccccch----------hhHHH--HHHHHHHHH-
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE-----HHKDLVAHIVFVCCSRLSLEKG----------PIIRQ--ALSNFISEA- 316 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~-----~~~~~~~~~~~v~~s~l~~~~~----------~~~~~--~l~~~~~~a- 316 (799)
+..+|++|+||||||++|..++.... ..+. .++++.++.++..... ..+.+ ....+...+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~--r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 82 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGI--RRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK 82 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSC--CCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCc--eEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh
Confidence 45689999999999999988755431 1110 2333455554432111 00000 011222221
Q ss_pred -HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccC
Q 003743 317 -LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 395 (799)
Q Consensus 317 -~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~g 395 (799)
....++||+|||++.+.+.+.+.... . . ++..+..... ..+.+|.+++++..++.++++
T Consensus 83 ~~~~~~~vliIDEAq~l~~~~~~~~e~--~----r----ll~~l~~~r~--------~~~~iil~tq~~~~l~~~lr~-- 142 (199)
T 2r2a_A 83 KPENIGSIVIVDEAQDVWPARSAGSKI--P----E----NVQWLNTHRH--------QGIDIFVLTQGPKLLDQNLRT-- 142 (199)
T ss_dssp SGGGTTCEEEETTGGGTSBCCCTTCCC--C----H----HHHGGGGTTT--------TTCEEEEEESCGGGBCHHHHT--
T ss_pred ccccCceEEEEEChhhhccCccccchh--H----H----HHHHHHhcCc--------CCeEEEEECCCHHHHhHHHHH--
Confidence 22457899999999997543221100 0 1 2222222111 136778888889999999998
Q ss_pred ceeEEEeccCCCH
Q 003743 396 RFDFHVQLPAPAA 408 (799)
Q Consensus 396 Rf~~~i~~~~p~~ 408 (799)
|+..+++++.+..
T Consensus 143 ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 143 LVRKHYHIASNKM 155 (199)
T ss_dssp TEEEEEEEEECSS
T ss_pred HhheEEEEcCccc
Confidence 9999999887643
No 190
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.50 E-value=1.1e-06 Score=95.27 Aligned_cols=167 Identities=13% Similarity=0.044 Sum_probs=108.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccc-c
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS-I 332 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~-l 332 (799)
.+..+|||||+|.||++.++.+++.+..........+.++. .......+..+-........-|++|||+|. +
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-------NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-------CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 34579999999999999999999887532211112222321 122223222222222234567999999988 6
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCC-----CCccchhhhccCceeEEEeccCCC
Q 003743 333 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-----LEKIPQSLTSSGRFDFHVQLPAPA 407 (799)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~-----~~~ld~aL~r~gRf~~~i~~~~p~ 407 (799)
.. ...+.|+..++..... .++|+++++. ...+.+++.+ |.. .+.+.+++
T Consensus 90 ~~---------------~~~~aLl~~le~p~~~--------~~~il~~~~~~~~~~~~k~~~~i~s--r~~-~~~~~~l~ 143 (343)
T 1jr3_D 90 NA---------------AINEQLLTLTGLLHDD--------LLLIVRGNKLSKAQENAAWFTALAN--RSV-QVTCQTPE 143 (343)
T ss_dssp CT---------------THHHHHHHHHTTCBTT--------EEEEEEESCCCTTTTTSHHHHHHTT--TCE-EEEECCCC
T ss_pred Ch---------------HHHHHHHHHHhcCCCC--------eEEEEEcCCCChhhHhhHHHHHHHh--Cce-EEEeeCCC
Confidence 41 2344566666543321 2444444432 2356788888 654 78999999
Q ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743 408 ASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 454 (799)
Q Consensus 408 ~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~ 454 (799)
..+....++..+...++.+++++++.++..+.| +.+++.+.++..+
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 999999999999999999999999999988766 5555555555544
No 191
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.47 E-value=1.3e-07 Score=101.22 Aligned_cols=106 Identities=14% Similarity=0.234 Sum_probs=58.8
Q ss_pred CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhc-cCCceeeEEEEEe
Q 003743 215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVC 293 (799)
Q Consensus 215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~-~~~~~~~~~~~v~ 293 (799)
+.+|+++++.......+.+.+..++.. ..-..+.+++|+||||||||+|++++|+.+. ... ..+.+++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~ 188 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ--------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLH 188 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH--------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEE
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh--------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEE
Confidence 457888877553334444444444421 1111357899999999999999999999886 443 3455566
Q ss_pred cccccccchhhH-HHHHHHHHHHHHhcCCcEEEEccccccc
Q 003743 294 CSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 294 ~s~l~~~~~~~~-~~~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
+..+........ ...+...+... ....+|+|||++...
T Consensus 189 ~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 189 FPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC--
T ss_pred HHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 554321100000 00011112222 245699999996653
No 192
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.46 E-value=8.6e-07 Score=91.63 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=72.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEcccccc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSI 332 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l 332 (799)
+...+++||||||||||+++.++|+.+.. ...++.+. ... .+..+ ....|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-------~G~vn~~~---~~f---------~l~~~--~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-------YGCVNWTN---ENF---------PFNDC--VDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-------EEECCTTC---SSC---------TTGGG--SSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-------cceeeccc---ccc---------ccccc--cccEEEEeccccch
Confidence 44678999999999999999999998641 11122211 000 11111 34457777777554
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCCCCEEEEEecCC-C----------CccchhhhccCce
Q 003743 333 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQS-L----------EKIPQSLTSSGRF 397 (799)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~----~~~~~~~~~~~v~vI~ttn~-~----------~~ld~aL~r~gRf 397 (799)
- .....+..++++.. .+...........+|.|||. + +...++|.+ |+
T Consensus 161 ~----------------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~ 222 (267)
T 1u0j_A 161 A----------------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM 222 (267)
T ss_dssp T----------------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE
T ss_pred h----------------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE
Confidence 2 11233444555211 11110111123456777776 2 234577888 77
Q ss_pred eEEEecc--------CCCHHHHHHHHHHHhhhcccC
Q 003743 398 DFHVQLP--------APAASERKAILEHEIQRRSLE 425 (799)
Q Consensus 398 ~~~i~~~--------~p~~~er~~Il~~~l~~~~~~ 425 (799)
. .+.|+ +.+.++....|.. .+.....
T Consensus 223 ~-~f~F~~~~p~~~~~lt~~~~~~f~~w-~~~~~~~ 256 (267)
T 1u0j_A 223 F-KFELTRRLDHDFGKVTKQEVKDFFRW-AKDHVVE 256 (267)
T ss_dssp E-EEECCSCCCTTSCCCCHHHHHHHHHH-HHHTCCC
T ss_pred E-EEECCCcCCcccCCCCHHHHHHHHHH-HHHcCCC
Confidence 5 67777 6777787777773 3444333
No 193
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.40 E-value=1.8e-07 Score=102.27 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=77.0
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccC-C
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP-K 617 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~-~ 617 (799)
+++++..++|+||||+|||+++++++...+..++.+..++-.. ...+. ...+..++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~------~~~lg------~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL------NFELG------VAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH------HHHHG------GGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhH------HHHHH------HhcchhHHHHHHHHHHHHHH
Confidence 4566778999999999999999999998888776644432100 00111 112335789999999875 2
Q ss_pred CCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCC
Q 003743 618 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF 676 (799)
Q Consensus 618 r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~ 676 (799)
+......... ....+...++| .+.|+.+||+++.+ +++.+|+|++..++..+
T Consensus 233 r~l~~~~~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSGQGIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCCSHHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccccCcch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2211111000 11233333443 34567789999999 79999999998877755
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.38 E-value=1.2e-07 Score=101.30 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=47.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEeccchhhhhhccc-HHHHHHHHHHhHhcCCeEEEEcccccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSI 614 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~~l~~~~~g~s-e~~i~~~f~~a~~~~p~ILfiDEid~l 614 (799)
..+++|+||||||||++|.++|..+ +.+++.++++++...+.+.. ...+...+.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999854 47888899888766544321 111222222222 3459999999765
No 195
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.38 E-value=2.1e-06 Score=94.03 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=92.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCC--eEEEEeccchhhh-----hhcccH-------HHHHHHHHHhHhcCCeEEEEc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNK-----YIGASE-------QAVRDIFSKATAAAPCLLFFD 609 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~--~~i~i~~~~l~~~-----~~g~se-------~~i~~~f~~a~~~~p~ILfiD 609 (799)
..+|++|++||||+.+|+++....+. .|+.++|..+-.. .+|... ..-...|+.|.++ .||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~g---tlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQG---TLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTS---EEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCC---eEEec
Confidence 36999999999999999999987643 3999999875321 111110 0112356666554 99999
Q ss_pred ccccccCCCCCCCCchhhHHHHHHHhhccCcc--c-------cCcEEEEEecCCCCc-------cChhhcCCCCcce-ee
Q 003743 610 EFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPDL-------LDAALLRPGRLDR-LL 672 (799)
Q Consensus 610 Eid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~--~-------~~~vlvi~ttn~~~~-------ld~al~r~gRf~~-~i 672 (799)
||+.| ...++..|+..|+.-. + .-.+-+|++||..-. +.+.|.. |+.. .|
T Consensus 230 ei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i 296 (368)
T 3dzd_A 230 EVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQI 296 (368)
T ss_dssp TGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEE
T ss_pred ChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEE
Confidence 99998 3567778887775321 1 113557777775311 2223333 4432 35
Q ss_pred ecCCCCH--HHHHHHHHHHHcc----CCCC-CcccHHHHHHHCCCCc-HHHHHHHH
Q 003743 673 FCDFPSP--RERLDILKVISRK----LPLA-DDVDLEAIAHMTEGFS-GADLQALL 720 (799)
Q Consensus 673 ~~~~p~~--~~r~~Il~~~~~~----~~~~-~~~~~~~la~~~~g~s-g~di~~~~ 720 (799)
++|+... +....+++.++.. .+.. ..++.+.+..... |+ ++.++.+.
T Consensus 297 ~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~-~~wpGNvreL~ 351 (368)
T 3dzd_A 297 YLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK-QEWKGNVRELK 351 (368)
T ss_dssp ECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT-CCCTTHHHHHH
T ss_pred eCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh-CCCCcHHHHHH
Confidence 6666544 4555555555432 2222 3455555555543 33 45555543
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.33 E-value=3.3e-07 Score=100.31 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHHhcCCcEEEEccc
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNL 329 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEi 329 (799)
++++.++.++|+||||+||||+++++++.++ ..++.++... . . ... .+. ......++++||+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~------g~~~~~~~~~---~--~-~~~----~lg--~~~q~~~~l~dd~ 225 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG------GKALNVNLPL---D--R-LNF----ELG--VAIDQFLVVFEDV 225 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC------CEEECCSSCT---T--T-HHH----HHG--GGTTCSCEEETTC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcC------CcEEEEeccc---h--h-HHH----HHH--HhcchhHHHHHHH
Confidence 4678889999999999999999999999876 3333222211 0 0 000 111 1234567899999
Q ss_pred ccccc-CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccC
Q 003743 330 DSIIS-SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA 405 (799)
Q Consensus 330 D~l~~-~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~ 405 (799)
+.+.. .+.-..+ .. . .....+.+.+++ .+.+++++|+++.+ +++.+|||++..+...+
T Consensus 226 ~~~~~~~r~l~~~---~~-~-~~~~~l~~~ldG------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 226 KGTGGESRDLPSG---QG-I-NNLDNLRDYLDG------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CCSTTTTTTCCCC---SH-H-HHHHTTHHHHHC------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHHhhcccc---Cc-c-hHHHHHHHHhcC------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 98864 1111111 11 0 122344455543 25678889999999 79999999987766644
No 197
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.30 E-value=3.2e-07 Score=78.22 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=65.0
Q ss_pred eccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceeccc
Q 003743 402 QLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDF 481 (799)
Q Consensus 402 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf 481 (799)
+-.+|+.++|.+||+.++++..+. ++..++.|++.|+||||+||.++|++|+..|+++. ...|+.+||
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------~~~I~~~df 74 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDF 74 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------CCCCCHHHH
Confidence 457899999999999999876654 33448899999999999999999999999998773 257899999
Q ss_pred chhcccccc
Q 003743 482 SQAMHEFLP 490 (799)
Q Consensus 482 ~~al~~~~p 490 (799)
..++..+.|
T Consensus 75 ~~Al~~v~p 83 (86)
T 2krk_A 75 EMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHcc
Confidence 999887655
No 198
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.25 E-value=7.7e-05 Score=85.62 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccch----hhh--hhc----------------------cc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL----LNK--YIG----------------------AS 587 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l----~~~--~~g----------------------~s 587 (799)
++.+...+++.||||+|||++++.++... |.+++.+...+- ... ..| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 44556678999999999999999998654 445555543221 000 001 11
Q ss_pred HHHHHHHHHHhHhcCCeEEEEcccccccC
Q 003743 588 EQAVRDIFSKATAAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 588 e~~i~~~f~~a~~~~p~ILfiDEid~l~~ 616 (799)
.+..+.++..+....|.+|+||=+-.+..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 23455666677778899999996666643
No 199
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.25 E-value=7.2e-07 Score=74.64 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=62.4
Q ss_pred cCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccch
Q 003743 404 PAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQ 483 (799)
Q Consensus 404 ~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~ 483 (799)
|.|+.++|.+||+.+++...+. ++..++.++..++||||+||.++|++|+..++.+. ...++.+||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~d~~~ 68 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFEM 68 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------CCCCCHHHHHH
Confidence 6899999999999998876553 34458999999999999999999999999998762 35688999999
Q ss_pred hccccc
Q 003743 484 AMHEFL 489 (799)
Q Consensus 484 al~~~~ 489 (799)
++..+.
T Consensus 69 Al~~v~ 74 (78)
T 3kw6_A 69 AVAKVM 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 200
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.22 E-value=9.9e-07 Score=87.13 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=27.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHhCCCeEE
Q 003743 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI 572 (799)
Q Consensus 541 ~~~~~vLL~GppGtGKT~la~alA~~~~~~~i 572 (799)
+...++||+||||||||++|.++|+.+...++
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 34467999999999999999999999876544
No 201
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.20 E-value=9.9e-06 Score=87.74 Aligned_cols=177 Identities=16% Similarity=0.083 Sum_probs=107.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CC-eEEEEeccchhhhhhcccHHHHHHHHHHhH----hcCCeEEEEccccc-
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SL-RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDS- 613 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~-~~i~i~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~ILfiDEid~- 613 (799)
...+||+||+|+||++.++.++..+ +. ++..+... + +..++++++.+. .+...|++|||+|.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 3479999999999999999998754 32 22222110 1 123445555443 24467999999998
Q ss_pred ccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC-----CCccChhhcCCCCcceeeecCCCCHHHHHHHHHH
Q 003743 614 IAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-----PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 688 (799)
Q Consensus 614 l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~-----~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~ 688 (799)
+. ....+.|+..++... .+.++|+++++. ...+-+++.+ |. .++.|.+++..+....++.
T Consensus 89 l~-----------~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 89 PN-----------AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CC-----------TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHH
T ss_pred CC-----------hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHH
Confidence 63 346677888887432 234455555432 2346778887 44 5789999999999999998
Q ss_pred HHccCCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHhhc
Q 003743 689 ISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 758 (799)
Q Consensus 689 ~~~~~~~~-~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a~~~~ 758 (799)
.++..++. ++...+.|+..+. +|++.+.++....++- . . ...||.+++.+.+...
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~----gdl~~~~~elekl~l~---~--~------~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYE----GNLLALAQALERLSLL---W--P------DGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSST----TCHHHHHHHHHHHHHH---C--T------TCEECHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhc----hHHHHHHHHHHHHHHh---c--C------CCCCCHHHHHHHHhhh
Confidence 88876653 2223445555444 4655554433322211 0 0 1257777777665544
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.01 E-value=3.7e-05 Score=75.02 Aligned_cols=24 Identities=46% Similarity=0.812 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+.|.||+|+|||||++.+++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999985
No 203
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.00 E-value=2.5e-05 Score=76.26 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.3
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRF 571 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~ 571 (799)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876443
No 204
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.98 E-value=3.2e-06 Score=72.39 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcc
Q 003743 407 AASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 486 (799)
Q Consensus 407 ~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~ 486 (799)
+.++|.+||+.++++..+. ++..++.|++.|+||+|+||.++|++|+..|+++.. ..++.+||..|+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------~~i~~~df~~Al~ 69 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------KVATEKDFLKAVD 69 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------SSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------ccCCHHHHHHHHH
Confidence 5678999999998876654 344589999999999999999999999999987732 4589999999998
Q ss_pred cccccc
Q 003743 487 EFLPVA 492 (799)
Q Consensus 487 ~~~p~~ 492 (799)
.+.+..
T Consensus 70 ~v~~~~ 75 (88)
T 3vlf_B 70 KVISGY 75 (88)
T ss_dssp HHTC--
T ss_pred HHhcCc
Confidence 876654
No 205
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.95 E-value=4.5e-06 Score=70.64 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhc
Q 003743 406 PAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 485 (799)
Q Consensus 406 p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al 485 (799)
.+.++|.+||+.++++..+. ++..++.++..++||||+||..+|++|+..|+.+. ...++.+||..++
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~df~~Al 68 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------RYIVLAKDFEKAY 68 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------CSSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHH
Confidence 36789999999999876553 33448999999999999999999999999888763 2568999999999
Q ss_pred cccccccc
Q 003743 486 HEFLPVAM 493 (799)
Q Consensus 486 ~~~~p~~~ 493 (799)
..+.|+..
T Consensus 69 ~~~~ps~~ 76 (83)
T 3aji_B 69 KTVIKKDE 76 (83)
T ss_dssp HHHCC---
T ss_pred HHHccCch
Confidence 98887643
No 206
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.93 E-value=1.9e-05 Score=81.50 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCC
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSL 569 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~ 569 (799)
+..+++|+||||||||++|.++|+.+..
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3568999999999999999999997654
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.71 E-value=0.00018 Score=72.51 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=26.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
|++.+..++|+||||+|||+|++.++..+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 577788899999999999999999997653
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.67 E-value=0.00017 Score=78.08 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc----------------cchhhHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL----------------EKGPIIRQALSNFIS 314 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~----------------~~~~~~~~~l~~~~~ 314 (799)
|++.+.-++|+||||+|||+|+..++..+.... ..+++++...... .......+.+..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 688888999999999999999999998865322 2345555433211 001112222222222
Q ss_pred HHHhcCCcEEEEcccccccc
Q 003743 315 EALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 315 ~a~~~~p~IL~IDEiD~l~~ 334 (799)
......+.+++||.+..+.+
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 22336788999999988874
No 209
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.66 E-value=0.00025 Score=70.97 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=30.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 295 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s 295 (799)
|++.+.-++|+||||+|||+|+..++...+ ..+++++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~------~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSG------KKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHC------SEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcC------CcEEEEECC
Confidence 678888899999999999999999998222 345556543
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=0.00019 Score=73.01 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=50.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCC---ceeeEEEEEecccccc---------------------------c
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL---------------------------E 300 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~---~~~~~~~~v~~s~l~~---------------------------~ 300 (799)
|++.+..++|+||||+|||+|++.++....... ......++++...... .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 678888999999999999999999998532110 0113556665543100 0
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 003743 301 KGPIIRQALSNFISEALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 301 ~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~ 333 (799)
........+..+...+....|.+|+||++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 001111122223333444678999999998876
No 211
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=0.00012 Score=73.77 Aligned_cols=38 Identities=26% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEec
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 576 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~ 576 (799)
++++...++|+||||+|||++++.++... +..++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34555678999999999999999999643 455555543
No 212
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.61 E-value=0.00011 Score=74.90 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHh--C-------CCeEEEEeccchhh--------hhhcc---------------
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAA--C-------SLRFISVKGPELLN--------KYIGA--------------- 586 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~--~-------~~~~i~i~~~~l~~--------~~~g~--------------- 586 (799)
++++..-++|+||||+|||++++.++.. . +...+.++..+... ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4555667899999999999999999984 3 45677777654100 00111
Q ss_pred cHHH----HHHHHHHhHhcCCeEEEEcccccccCC
Q 003743 587 SEQA----VRDIFSKATAAAPCLLFFDEFDSIAPK 617 (799)
Q Consensus 587 se~~----i~~~f~~a~~~~p~ILfiDEid~l~~~ 617 (799)
+... +..+.+......|.+|+|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1111 222333444568999999999988643
No 213
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.54 E-value=0.00018 Score=78.25 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh----hc-----------ccHHHHHHHHHH-hH
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----IG-----------ASEQAVRDIFSK-AT 599 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~----~g-----------~se~~i~~~f~~-a~ 599 (799)
|+++..-++++||||+|||++|..+|..+ +.+++.++...-.... .| .+...+...++. .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566678999999999999998887653 5677777765422211 11 112223333333 23
Q ss_pred hcCCeEEEEcccccccCCCCCCC--C----chhhHHHHHHHhhccCccccCcEEEEEe
Q 003743 600 AAAPCLLFFDEFDSIAPKRGHDN--T----GVTDRVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 600 ~~~p~ILfiDEid~l~~~r~~~~--~----~~~~r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
...+.+|+||.+..+.++..... . +...+.+.+++..|..+....++.||++
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46789999999999985332110 0 1223455666666654444445555544
No 214
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=0.00019 Score=77.64 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh----hhc-----------cc-HHHHHHHHHHhH
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----YIG-----------AS-EQAVRDIFSKAT 599 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~----~~g-----------~s-e~~i~~~f~~a~ 599 (799)
|+++..-++++||||+|||+++..++..+ +.++++++....... -+| .+ +..+..+-...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45556678999999999999999998764 667777776653211 011 11 122222222233
Q ss_pred hcCCeEEEEcccccccCCC---C---CCCCchhhHHHHHHHhhccCccccCcEEEEE
Q 003743 600 AAAPCLLFFDEFDSIAPKR---G---HDNTGVTDRVVNQFLTELDGVEVLTGVFVFA 650 (799)
Q Consensus 600 ~~~p~ILfiDEid~l~~~r---~---~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ 650 (799)
...|.+++||.+..+.+.. + ........+.+.+++..|..+....++.||.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~ 193 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIF 193 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4778999999999987621 0 0111123466667766665554444444444
No 215
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.51 E-value=0.0012 Score=76.85 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=95.5
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---ccCCceeeEEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL---EHHKDLVAHIV 290 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l---~~~~~~~~~~~ 290 (799)
.+.....++|.+..++.+.+.+... -...+.++|+||+|+|||+||+.++... ..... ..+.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~v~ 183 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKL-------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP--GGVH 183 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTS-------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT--TCEE
T ss_pred CCCCCCeecccHHHHHHHHHHHhcc-------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC--CceE
Confidence 3455677899998888877755321 1234679999999999999999987532 11110 1233
Q ss_pred EEeccccccc----------------------chhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchh
Q 003743 291 FVCCSRLSLE----------------------KGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTS 347 (799)
Q Consensus 291 ~v~~s~l~~~----------------------~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~~ 347 (799)
+++++..... ...........+...... ..|.+|+|||++...
T Consensus 184 wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------- 249 (591)
T 1z6t_A 184 WVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------- 249 (591)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--------------
T ss_pred EEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--------------
Confidence 3433321100 000011111111111111 267899999996431
Q ss_pred HHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEe-ccCCCHHHHHHHHHHHhhhcccCC
Q 003743 348 VIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQ-LPAPAASERKAILEHEIQRRSLEC 426 (799)
Q Consensus 348 ~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~-~~~p~~~er~~Il~~~l~~~~~~~ 426 (799)
.. +.+.. ...||.||....... .. . +.. ..+. +++++.++-.++|...+......
T Consensus 250 ---~l-------~~l~~---------~~~ilvTsR~~~~~~-~~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~- 305 (591)
T 1z6t_A 250 ---VL-------KAFDS---------QCQILLTTRDKSVTD-SV-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKAD- 305 (591)
T ss_dssp ---HH-------HTTCS---------SCEEEEEESCGGGGT-TC-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGG-
T ss_pred ---HH-------HHhcC---------CCeEEEECCCcHHHH-hc-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCccc-
Confidence 11 11111 245566665433211 11 1 122 2233 35789999999998876542222
Q ss_pred CHHHHHHHHhhcCCCChhhHH
Q 003743 427 SDEILLDVASKCDGYDAYDLE 447 (799)
Q Consensus 427 ~~~~l~~la~~~~g~s~~dl~ 447 (799)
.++....+++.|.|. |-.|+
T Consensus 306 ~~~~~~~i~~~~~G~-PLal~ 325 (591)
T 1z6t_A 306 LPEQAHSIIKECKGS-PLVVS 325 (591)
T ss_dssp SCTHHHHHHHHHTTC-HHHHH
T ss_pred ccHHHHHHHHHhCCC-cHHHH
Confidence 234578899999885 44343
No 216
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.51 E-value=0.0018 Score=74.63 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=94.6
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHH----HhccCCceeeEEEEEecccc
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAK----SLEHHKDLVAHIVFVCCSRL 297 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~----~l~~~~~~~~~~~~v~~s~l 297 (799)
+|.+..+++|.+.+..-- -+..+.+.|+|++|+|||+||+.+++ .....+ ...++++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~~------------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F---~~~~wv~vs~~ 195 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY---DSIVWLKDSGT 195 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB---SEEEEEECCCC
T ss_pred CCchHHHHHHHHHHhccc------------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC---CcEEEEEECCC
Confidence 489998998888773310 12346799999999999999999997 232222 23444554442
Q ss_pred cc-cchhhH-----------------------HHHHHHHHHHHHhcC-CcEEEEccccccccCCCCCCCCCCchhHHHHH
Q 003743 298 SL-EKGPII-----------------------RQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 352 (799)
Q Consensus 298 ~~-~~~~~~-----------------------~~~l~~~~~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~ 352 (799)
.. ...... ...+...+....... +.+|+|||++... .+
T Consensus 196 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~- 258 (549)
T 2a5y_B 196 APKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI- 258 (549)
T ss_dssp STTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH-
T ss_pred CCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh-
Confidence 10 000000 011222233333343 7899999996642 11
Q ss_pred HHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhccc-CCCHHHH
Q 003743 353 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL-ECSDEIL 431 (799)
Q Consensus 353 ~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~-~~~~~~l 431 (799)
.+. ... ...||.||....- .... +.....+.+++.+.++-.++|......... .-..+..
T Consensus 259 -~~~----~~~----------gs~ilvTTR~~~v-~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 319 (549)
T 2a5y_B 259 -RWA----QEL----------RLRCLVTTRDVEI-SNAA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVL 319 (549)
T ss_dssp -HHH----HHT----------TCEEEEEESBGGG-GGGC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHH
T ss_pred -ccc----ccC----------CCEEEEEcCCHHH-HHHc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHH
Confidence 111 111 1345555554221 1111 113356899999999999999887433221 1112347
Q ss_pred HHHHhhcCCCC
Q 003743 432 LDVASKCDGYD 442 (799)
Q Consensus 432 ~~la~~~~g~s 442 (799)
..+++.|.|..
T Consensus 320 ~~I~~~c~GlP 330 (549)
T 2a5y_B 320 NKTIELSSGNP 330 (549)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHhCCCh
Confidence 77888888853
No 217
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.47 E-value=0.00012 Score=79.44 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=50.4
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh----hhcc-----------cHHHHHHHHH-HhH
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----YIGA-----------SEQAVRDIFS-KAT 599 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~----~~g~-----------se~~i~~~f~-~a~ 599 (799)
|+++..-++++||||+|||+++..++... +.+++.++...-... ..|. +...+..+.. .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556679999999999999999888643 566777765542211 1121 1122222222 234
Q ss_pred hcCCeEEEEcccccccC
Q 003743 600 AAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 600 ~~~p~ILfiDEid~l~~ 616 (799)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999974
No 218
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.45 E-value=0.00042 Score=75.04 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccc----------------hhhHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 314 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~----------------~~~~~~~l~~~~~ 314 (799)
|++.++.++|+||||+|||+|+..++..+.... ..+++++........ .....+.+..+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 678888999999999999999999887664322 234555543211100 0011222222222
Q ss_pred HHHhcCCcEEEEccccccc
Q 003743 315 EALDHAPSIVIFDNLDSII 333 (799)
Q Consensus 315 ~a~~~~p~IL~IDEiD~l~ 333 (799)
.+....|.+|+||++..+.
T Consensus 134 l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHTTTCCSEEEEECGGGCC
T ss_pred HHhcCCCCEEEEcChHhhc
Confidence 2334568999999999887
No 219
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.44 E-value=0.0004 Score=74.44 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCC---ceeeEEEEEeccccc-cc--------------------------
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLS-LE-------------------------- 300 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~---~~~~~~~~v~~s~l~-~~-------------------------- 300 (799)
|++.+..++|+||||+|||+|+..+|....... .....+++++..... ..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 688888999999999999999999998753210 001456666655421 00
Q ss_pred chhhHHHHHHHHHHHHHh-cCCcEEEEcccccccc
Q 003743 301 KGPIIRQALSNFISEALD-HAPSIVIFDNLDSIIS 334 (799)
Q Consensus 301 ~~~~~~~~l~~~~~~a~~-~~p~IL~IDEiD~l~~ 334 (799)
........+..+...+.. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 001111223333333444 5788999999998873
No 220
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.44 E-value=0.00062 Score=74.04 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=50.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccc----------------hhhHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 314 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~----------------~~~~~~~l~~~~~ 314 (799)
|++.+..++|+||||+|||+|+..+|..+.... ..+++++........ .....+.+..+-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 678888999999999999999998887764322 345556543311100 0111222222222
Q ss_pred HHHhcCCcEEEEcccccccc
Q 003743 315 EALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 315 ~a~~~~p~IL~IDEiD~l~~ 334 (799)
......+.+|+||.+..+.+
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 22335688999999998874
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.41 E-value=0.00022 Score=71.40 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 578 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~ 578 (799)
++++..-++|+||||+|||+++..+|...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4556667899999999999999999985567777777654
No 222
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.39 E-value=0.00054 Score=69.92 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAK 277 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~ 277 (799)
|++.+..+.|.||+|+|||||++.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 678888999999999999999999983
No 223
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.35 E-value=0.0026 Score=63.88 Aligned_cols=33 Identities=33% Similarity=0.322 Sum_probs=25.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEec
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 576 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~ 576 (799)
..+++.|+||||||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999999999999998888765 666554444
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00022 Score=77.35 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=52.1
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhh----hhcc-----------cHHHHHHHHHHh-H
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----YIGA-----------SEQAVRDIFSKA-T 599 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~----~~g~-----------se~~i~~~f~~a-~ 599 (799)
|+++..-++++||||+|||++|..+|..+ +.+++.++....... -.|. +...+..++... +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45566679999999999999999888653 667788876432211 1111 223334444332 3
Q ss_pred hcCCeEEEEcccccccC
Q 003743 600 AAAPCLLFFDEFDSIAP 616 (799)
Q Consensus 600 ~~~p~ILfiDEid~l~~ 616 (799)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999875
No 225
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.34 E-value=0.00026 Score=75.90 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=65.1
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---------CCeEEEEeccchh--h------hhhcc---------------
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPELL--N------KYIGA--------------- 586 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---------~~~~i~i~~~~l~--~------~~~g~--------------- 586 (799)
|+++..-++++||||+|||+++..+|... +.++++++...-+ . .-.|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45566679999999999999999998764 5677888765421 0 00111
Q ss_pred cHH----HHHHHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhh--HHHHHHHhhccCccccCcEEEEEe
Q 003743 587 SEQ----AVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTD--RVVNQFLTELDGVEVLTGVFVFAA 651 (799)
Q Consensus 587 se~----~i~~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~--r~~~~ll~~ld~~~~~~~vlvi~t 651 (799)
+.. .+..+....+. ..|.+|+||.+..+....-.+.....+ ..+.+++..|..+....++.||.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 111 12233333444 678999999999986421111111222 245566655554443344555544
No 226
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.0007 Score=73.19 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=52.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCC---ceeeEEEEEeccccccc---------------------------
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSLE--------------------------- 300 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~---~~~~~~~~v~~s~l~~~--------------------------- 300 (799)
|++.+..++|+||||+|||+|+..+|....... .....+++++.......
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 688888899999999999999999998743210 01145667766542110
Q ss_pred chhhHHHHHHHHHHHHHh--cCCcEEEEcccccccc
Q 003743 301 KGPIIRQALSNFISEALD--HAPSIVIFDNLDSIIS 334 (799)
Q Consensus 301 ~~~~~~~~l~~~~~~a~~--~~p~IL~IDEiD~l~~ 334 (799)
........+..+...+.. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 001111222222233344 5678999999998873
No 227
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.33 E-value=0.0032 Score=73.11 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=90.9
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHh-------CC--CeEEEEecc
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-------CS--LRFISVKGP 577 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~-------~~--~~~i~i~~~ 577 (799)
....++|-+...+.|.+.+.... ...+-++++||+|+|||++|+.+++. +. .-++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34568899988888888765310 11246889999999999999988642 22 223334332
Q ss_pred c---hhhhh------hc----------ccHHHHHHHHHHhHh--cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhh
Q 003743 578 E---LLNKY------IG----------ASEQAVRDIFSKATA--AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 636 (799)
Q Consensus 578 ~---l~~~~------~g----------~se~~i~~~f~~a~~--~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ 636 (799)
+ +...+ .+ .....+...+...-. ..|.+|+||+++.. ..+..
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~l~~ 253 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WVLKA 253 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HHHHT
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HHHHH
Confidence 1 11111 11 111222333333222 26899999999752 12222
Q ss_pred ccCccccCcEEEEEecCCCCccChhhcCCCCcceeee-cCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCc
Q 003743 637 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF-CDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFS 712 (799)
Q Consensus 637 ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~-~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~s 712 (799)
+ . .+..||.||..+..... . . +.. ..+. .++.+.++-.+++...+..-..........|.+.+.|..
T Consensus 254 l---~--~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 254 F---D--SQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp T---C--SSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred h---c--CCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 2 2 23445556655432211 1 1 111 1222 246788888888887764321111234677888888765
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.00074 Score=73.20 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=50.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccccc----------------hhhHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 314 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~~----------------~~~~~~~l~~~~~ 314 (799)
|++.++.++|+||||+|||+||..+|..+.... ..+++++........ ...... +..++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~-~~~~~~ 134 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ-ALEICD 134 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHH-HHHHHH
Confidence 678888999999999999999999987764322 345566653211100 001111 222222
Q ss_pred H-HHhcCCcEEEEcccccccc
Q 003743 315 E-ALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 315 ~-a~~~~p~IL~IDEiD~l~~ 334 (799)
. .....+.+|+||.+..+.+
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCCC
T ss_pred HHHhccCCCEEEEcCHHHhcc
Confidence 2 2346788999999988873
No 229
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.00033 Score=75.74 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=64.5
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---------CCeEEEEeccchhh--------hhhcc---------------
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPELLN--------KYIGA--------------- 586 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---------~~~~i~i~~~~l~~--------~~~g~--------------- 586 (799)
|+++..-++++||||+|||+++..+|... +..+++++....+. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666678999999999999999998862 56777777655211 00111
Q ss_pred -cH---HHHHHHHHHhHh--cCCeEEEEcccccccCCCCCCCCchhhH--HHHHHHhhccCccccCcEEEEEec
Q 003743 587 -SE---QAVRDIFSKATA--AAPCLLFFDEFDSIAPKRGHDNTGVTDR--VVNQFLTELDGVEVLTGVFVFAAT 652 (799)
Q Consensus 587 -se---~~i~~~f~~a~~--~~p~ILfiDEid~l~~~r~~~~~~~~~r--~~~~ll~~ld~~~~~~~vlvi~tt 652 (799)
.+ ..+..+....+. ..+.+|+||.+..+....-.+.....+| .+..++..|..+....++.||.+.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~n 271 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTN 271 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 11 111222233444 6788999999999874311100112222 355555555444444445555443
No 230
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.26 E-value=0.00067 Score=68.27 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
|++.+.-+.|+||+|+|||||++.++..+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 678888899999999999999999998654
No 231
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=0.0005 Score=66.38 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 578 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~ 578 (799)
..++|+|+||+||||++++|+..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 35899999999999999999999999888766543
No 232
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.23 E-value=0.00074 Score=76.05 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=57.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHhC---CC-eEEEEeccchhh----hhhcccHHHHHHHHHHh----------------Hh
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAAC---SL-RFISVKGPELLN----KYIGASEQAVRDIFSKA----------------TA 600 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~---~~-~~i~i~~~~l~~----~~~g~se~~i~~~f~~a----------------~~ 600 (799)
.+++.|+||||||+++.+++..+ +. .++.+....-.. ...|.....++.++... ..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 79999999999999999998766 33 444444332211 11122222233333311 01
Q ss_pred cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCC
Q 003743 601 AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 654 (799)
Q Consensus 601 ~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~ 654 (799)
....+|+|||+..+. ...+..++..+. ....++++|-.+.
T Consensus 127 ~~~~~iiiDE~~~~~-----------~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 127 AKCRVLICDEVSMYD-----------RKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SSCSEEEESCGGGCC-----------HHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred cCCCEEEEECchhCC-----------HHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 234699999998762 345556665553 4556888886665
No 233
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.23 E-value=0.0013 Score=72.39 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=50.5
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC---ceeeEEEEEecccccccc-------------------------
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSLEK------------------------- 301 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~---~~~~~~~~v~~s~l~~~~------------------------- 301 (799)
-|++.+..++|+||||+|||+|++.++-...... ......++++........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 3788889999999999999999997764432110 011345666554311000
Q ss_pred --hhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 003743 302 --GPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 302 --~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~ 334 (799)
.......+..+...+....|.+|+||++-.+..
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 001112222333333446788999999988763
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.22 E-value=0.00078 Score=70.98 Aligned_cols=110 Identities=10% Similarity=0.166 Sum_probs=61.9
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEeccchhh----hhhcc-----------cHHHH-HHHHHH
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLN----KYIGA-----------SEQAV-RDIFSK 597 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~~l~~----~~~g~-----------se~~i-~~~f~~ 597 (799)
|+++. -++++||||+|||+++-.++..+ +..++.++..+-.. .-+|. +...+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999976665432 67788888765321 11111 11222 223222
Q ss_pred ---hHhcCCeEEEEcccccccCCCCCC-C-C----c--hhhHHHHHHHhhccCccccCcEEEE
Q 003743 598 ---ATAAAPCLLFFDEFDSIAPKRGHD-N-T----G--VTDRVVNQFLTELDGVEVLTGVFVF 649 (799)
Q Consensus 598 ---a~~~~p~ILfiDEid~l~~~r~~~-~-~----~--~~~r~~~~ll~~ld~~~~~~~vlvi 649 (799)
.+...|.+|+||-|..+.++..-. . . + ...|..++++..|..+....++.+|
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi 166 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCI 166 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 356789999999999998643211 1 0 1 2345566666554433333444443
No 235
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.21 E-value=4.6e-05 Score=64.16 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccceecccchhcccc
Q 003743 409 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 488 (799)
Q Consensus 409 ~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~r~~~~~~~~~~~~~~~l~~edf~~al~~~ 488 (799)
++|.+||+.+++...+. ++..++.++..++||||+||.++|++|+..|+.+. ...++.+||..++..+
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------RYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHHHH
Confidence 36889999888776543 23347889999999999999999999999998762 2568899999998876
Q ss_pred c
Q 003743 489 L 489 (799)
Q Consensus 489 ~ 489 (799)
.
T Consensus 69 ~ 69 (82)
T 2dzn_B 69 V 69 (82)
T ss_dssp C
T ss_pred H
Confidence 4
No 236
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.21 E-value=0.0036 Score=71.34 Aligned_cols=74 Identities=11% Similarity=0.246 Sum_probs=50.9
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCC--ccchhhhccCceeE
Q 003743 322 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDF 399 (799)
Q Consensus 322 ~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~--~ld~aL~r~gRf~~ 399 (799)
-+|+|||++.++.... ..+...|..+...-... .+.+|.+|.++. .++..++. .|..
T Consensus 345 ivvVIDE~~~L~~~~~-----------~~~~~~L~~Iar~GRa~--------GIhLIlaTQRPs~d~I~~~Ira--n~~~ 403 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----------KKVEELIARIAQKARAA--------GIHLILATQRPSVDVITGLIKA--NIPT 403 (574)
T ss_dssp EEEEESCCTTHHHHTC-----------HHHHHHHHHHHHHCTTT--------TEEEEEEESCCCTTTSCHHHHH--TCCE
T ss_pred EEEEEeCHHHHhhhhh-----------HHHHHHHHHHHHHHhhC--------CeEEEEEecCcccccccHHHHh--hhcc
Confidence 4899999998873210 12333333333322221 388888898886 78888888 8888
Q ss_pred EEeccCCCHHHHHHHHH
Q 003743 400 HVQLPAPAASERKAILE 416 (799)
Q Consensus 400 ~i~~~~p~~~er~~Il~ 416 (799)
+|.+...+..+...|+.
T Consensus 404 RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 404 RIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEECCSCHHHHHHHHS
T ss_pred EEEEEcCCHHHHHHhcC
Confidence 89999999988888874
No 237
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.19 E-value=0.00018 Score=70.56 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=37.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHh---CCCeEEEEeccchhhhh--------hccc-----HHHHHHHHHHhHhcCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGPELLNKY--------IGAS-----EQAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~---~~~~~i~i~~~~l~~~~--------~g~s-----e~~i~~~f~~a~~~~p~ILfi 608 (799)
-.+++||+|+|||+++..++.. .+.+++.+.... -..| .|.. .....++++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 4679999999999998666543 355555443220 0011 0100 011223333332 24679999
Q ss_pred cccccc
Q 003743 609 DEFDSI 614 (799)
Q Consensus 609 DEid~l 614 (799)
||+..+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999986
No 238
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.19 E-value=0.0012 Score=71.54 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=27.7
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
.|++.+.-+.|+||||+|||+|++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888899999999999999999999887
No 239
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.18 E-value=0.0015 Score=68.95 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=48.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEeccccccc----------------chhhHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE----------------KGPIIRQALSNFIS 314 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~~----------------~~~~~~~~l~~~~~ 314 (799)
|++.+ .++++||||+|||+|+..++....... .-..+++++...-... .....++....+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 67777 699999999999999877665543210 0034566665331110 00112222012222
Q ss_pred H---HHhcCCcEEEEcccccccc
Q 003743 315 E---ALDHAPSIVIFDNLDSIIS 334 (799)
Q Consensus 315 ~---a~~~~p~IL~IDEiD~l~~ 334 (799)
. +....|.+|+||=|..+.+
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHhhccCceEEEEeccccccc
Confidence 2 2446789999999999974
No 240
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.14 E-value=0.0022 Score=65.08 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.6
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
.|++.+..++|+||||+|||+|+..++..+
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 367888889999999999999988777654
No 241
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.08 E-value=0.00084 Score=73.89 Aligned_cols=115 Identities=13% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---------CCeEEEEeccchhh--------hhhcccH-------------
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPELLN--------KYIGASE------------- 588 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---------~~~~i~i~~~~l~~--------~~~g~se------------- 588 (799)
|+.+..-++|+||||+|||+|+..++-.. +...++++..+... .-+|...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 45666679999999999999999776332 34577777654211 1111110
Q ss_pred ------HHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchh--hHHHHHHHhhccCccccCcEEEEEecC
Q 003743 589 ------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT--DRVVNQFLTELDGVEVLTGVFVFAATS 653 (799)
Q Consensus 589 ------~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~--~r~~~~ll~~ld~~~~~~~vlvi~ttn 653 (799)
..+..+........|.+|+||++-.+....-.+..... .+.+..++..|..+....++.||.++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 11222333334567899999999988754221111222 233355555554444333444554443
No 242
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.06 E-value=0.0091 Score=67.48 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=33.3
Q ss_pred EEEEEecCCCC--ccchhhhccCceeEEEeccCCCHHHHHHHHH
Q 003743 375 IAFVASAQSLE--KIPQSLTSSGRFDFHVQLPAPAASERKAILE 416 (799)
Q Consensus 375 v~vI~ttn~~~--~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~ 416 (799)
+.+|.+|.++. .++..++. .+..+|.|...+..+...|+.
T Consensus 333 I~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 333 IHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred cEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 78888888876 57888887 788889999999999888875
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.05 E-value=0.00048 Score=69.35 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---------CCeEEEEeccc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 578 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---------~~~~i~i~~~~ 578 (799)
++.+..-+.|.||+|+|||++++.++... +...+.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45555678999999999999999999843 33466666543
No 244
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.04 E-value=0.0039 Score=78.77 Aligned_cols=178 Identities=12% Similarity=0.135 Sum_probs=98.3
Q ss_pred CCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc-CCceeeEEEEE
Q 003743 214 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-HKDLVAHIVFV 292 (799)
Q Consensus 214 ~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~-~~~~~~~~~~v 292 (799)
.+.....++|.+..+++|.+.+... -...+-+.|+|++|+|||+||+.++..... .......++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v 185 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEE
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEE
Confidence 4556677899999888888765321 023466899999999999999988865321 00011223445
Q ss_pred ecccccccch---------------------hhHHHHHHHHHHHHHhc--CCcEEEEccccccccCCCCCCCCCCchhHH
Q 003743 293 CCSRLSLEKG---------------------PIIRQALSNFISEALDH--APSIVIFDNLDSIISSSSDPEGSQPSTSVI 349 (799)
Q Consensus 293 ~~s~l~~~~~---------------------~~~~~~l~~~~~~a~~~--~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~ 349 (799)
+.+....... ......+...+...... .+.+|+|||++...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------------- 249 (1249)
T 3sfz_A 186 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------------- 249 (1249)
T ss_dssp ECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------
T ss_pred EECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------
Confidence 5443211000 00011122222222222 37899999997531
Q ss_pred HHHHHHHHHHHHhccccCCccCCCCEEEEEecCCCCccchhhhccCceeEEEeccC-CCHHHHHHHHHHHhhhcccCCCH
Q 003743 350 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA-PAASERKAILEHEIQRRSLECSD 428 (799)
Q Consensus 350 ~l~~~Ll~~ld~~~~~~~~~~~~~~v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~-p~~~er~~Il~~~l~~~~~~~~~ 428 (799)
. +..+.. ...||.||....-.. .+. .....+.++. ++.++-.++|..+....... .+
T Consensus 250 ----~----~~~~~~---------~~~ilvTtR~~~~~~-~~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~ 307 (1249)
T 3sfz_A 250 ----V----LKAFDN---------QCQILLTTRDKSVTD-SVM---GPKHVVPVESGLGREKGLEILSLFVNMKKED-LP 307 (1249)
T ss_dssp ----H----HTTTCS---------SCEEEEEESSTTTTT-TCC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CC
T ss_pred ----H----HHhhcC---------CCEEEEEcCCHHHHH-hhc---CCceEEEecCCCCHHHHHHHHHHhhCCChhh-Cc
Confidence 1 111111 135566665433211 111 1223567775 89999999998776443322 23
Q ss_pred HHHHHHHhhcCCCC
Q 003743 429 EILLDVASKCDGYD 442 (799)
Q Consensus 429 ~~l~~la~~~~g~s 442 (799)
+....+++.|.|..
T Consensus 308 ~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 308 AEAHSIIKECKGSP 321 (1249)
T ss_dssp THHHHHHHHTTTCH
T ss_pred HHHHHHHHHhCCCH
Confidence 45788999998863
No 245
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.04 E-value=0.01 Score=59.59 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhccCC
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLEHHK 283 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~~~~ 283 (799)
-.+++.|+||+|||+++-.+|..+...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4599999999999999999998876443
No 246
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.02 E-value=0.00097 Score=65.24 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=20.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l 279 (799)
+.-++++||||+|||+++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999986666554
No 247
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.02 E-value=0.0018 Score=69.26 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=26.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
|++.+.-++|+||||+|||+|+..+|...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67888889999999999999999998763
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.00 E-value=0.0028 Score=67.19 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 227 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 227 ~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
..+.+.+.+...+....+ ..+....+..++|+||+|+||||++..+|..+...
T Consensus 79 ~~~~~~~~l~~~l~~~~~---~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 79 ALESLKEIILEILNFDTK---LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHHHTCSCCC---CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCC---CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 455566667666654321 11223456779999999999999999999988643
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.00 E-value=0.0026 Score=70.53 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=48.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchh-------------------hhhhcc-cHHHHHHHHHHhH
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-------------------NKYIGA-SEQAVRDIFSKAT 599 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~-------------------~~~~g~-se~~i~~~f~~a~ 599 (799)
+.-+++.|+||+||||++..+|..+ |..+..+.+..+. ....+. ....+...++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5568899999999999999998765 5666665543221 001122 2234567777887
Q ss_pred hcCCeEEEEcccccc
Q 003743 600 AAAPCLLFFDEFDSI 614 (799)
Q Consensus 600 ~~~p~ILfiDEid~l 614 (799)
...+.+++||.+..+
T Consensus 180 ~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRH 194 (443)
T ss_dssp HTTCSEEEEECCCCS
T ss_pred hCCCCEEEEECCCcc
Confidence 777889999987544
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.96 E-value=0.00042 Score=66.92 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=23.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.||||+||||++++|++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35699999999999999999999987
No 251
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.00042 Score=68.54 Aligned_cols=29 Identities=38% Similarity=0.485 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
++.+..++|.|||||||||+++.||+.++
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44567899999999999999999999997
No 252
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.96 E-value=0.0006 Score=78.81 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=58.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchhhhh----hcccHHHHHHHHHHh---------HhcCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----IGASEQAVRDIFSKA---------TAAAPCLLF 607 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~~~~----~g~se~~i~~~f~~a---------~~~~p~ILf 607 (799)
..+++.||||||||+++.+++..+ +.+++.+.+..-.... .|.....++.++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998754 5666655443221111 111112233333211 112347999
Q ss_pred EcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC
Q 003743 608 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 655 (799)
Q Consensus 608 iDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~ 655 (799)
|||+..+. ......++..+ .....++++|-.+..
T Consensus 285 IDEasml~-----------~~~~~~Ll~~~---~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 285 VDEVSMMG-----------DALMLSLLAAV---PPGARVLLVGDTDQL 318 (574)
T ss_dssp ECCGGGCC-----------HHHHHHHHTTS---CTTCEEEEEECTTSC
T ss_pred EcCccCCC-----------HHHHHHHHHhC---cCCCEEEEEeccccc
Confidence 99998772 34555555544 455678888877654
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.95 E-value=0.0046 Score=64.52 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
|++.+..++|+||||+|||+|+..++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 7888889999999999999999999986653
No 254
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.95 E-value=0.0025 Score=64.92 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=28.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEecc
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 577 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~ 577 (799)
.++++||+|+|||.++.+++...+.+++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 589999999999999999998887777766654
No 255
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.94 E-value=0.00095 Score=72.28 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=31.6
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---------CCeEEEEeccc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 578 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---------~~~~i~i~~~~ 578 (799)
++++..-+.|+||||+|||++++.++... +..+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45556678999999999999999999876 24667777654
No 256
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.94 E-value=0.00057 Score=70.85 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
++++..++|.||+|+||||+++++++.+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 35567799999999999999999999875
No 257
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.93 E-value=0.01 Score=74.83 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=95.7
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHh-------CCCeEEEEeccch
Q 003743 507 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-------CSLRFISVKGPEL 579 (799)
Q Consensus 507 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~-------~~~~~i~i~~~~l 579 (799)
....++|.++..+.|.+.+.... ...+-+.++|++|+|||+||+.+++. ....++-++.+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34567899988888888764321 11235789999999999999988865 2223334443321
Q ss_pred -----h-------hhh---------hcccHHHHHHHHHHhHhc--CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhh
Q 003743 580 -----L-------NKY---------IGASEQAVRDIFSKATAA--APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 636 (799)
Q Consensus 580 -----~-------~~~---------~g~se~~i~~~f~~a~~~--~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ 636 (799)
. ... .......+...+...... ++.+|+||+++.. ..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------------~~~-- 251 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------------WVL-- 251 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------------HHH--
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------------HHH--
Confidence 0 000 011223333344333333 3789999999753 112
Q ss_pred ccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCC-CCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCc
Q 003743 637 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF-PSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFS 712 (799)
Q Consensus 637 ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~-p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~s 712 (799)
+.+.. +.-||.||..+.-... +. .....+.+++ .+.++-.++|........-........|++.+.|..
T Consensus 252 -~~~~~--~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 252 -KAFDN--QCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp -TTTCS--SCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred -HhhcC--CCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 11222 2345557765533211 11 2235567775 788888889987764433222334677888888765
No 258
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.0026 Score=64.67 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKS 278 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~ 278 (799)
|++++.-++|+|+||+|||+||..+|..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 6888889999999999999999876643
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.88 E-value=0.00043 Score=67.39 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=28.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
..++|+||||||||++++.+|..++.+++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999887654
No 260
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.88 E-value=0.0041 Score=62.59 Aligned_cols=27 Identities=30% Similarity=0.152 Sum_probs=22.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
+.-++++||||+|||+++..++..+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 455788999999999998888877653
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.85 E-value=0.00056 Score=66.53 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=24.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
++.|+|+|||||||||+++.||+.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999997
No 262
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.85 E-value=0.0017 Score=66.11 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHH
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAA 564 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA 564 (799)
++++..-+.|.||+|+|||++++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34555678999999999999999998
No 263
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.83 E-value=0.0039 Score=70.99 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=50.2
Q ss_pred eEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCC--ccChhhcCCCCcceeeecCCCCHHH
Q 003743 604 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD--LLDAALLRPGRLDRLLFCDFPSPRE 681 (799)
Q Consensus 604 ~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~--~ld~al~r~gRf~~~i~~~~p~~~~ 681 (799)
.+|+|||++.+..... ......+..+.+. -+.-++.+|.+|.+|. .++..++. .|...|.|...+..+
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 5899999998864311 1111222222221 2344688888898987 68888887 788888999999888
Q ss_pred HHHHHH
Q 003743 682 RLDILK 687 (799)
Q Consensus 682 r~~Il~ 687 (799)
...|+.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877774
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.82 E-value=0.00069 Score=73.43 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=43.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEe-ccccc---------ccchhhHHHHHHHHHHHHHhcCCcE
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC-CSRLS---------LEKGPIIRQALSNFISEALDHAPSI 323 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~-~s~l~---------~~~~~~~~~~l~~~~~~a~~~~p~I 323 (799)
++..+++.||+|+||||+++++++.+..... ..++.+. ..++. ....+.....+...+..+....|.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdv 199 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY--HHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDI 199 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCC--CEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCC--cEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCE
Confidence 3457999999999999999999998863210 1111111 00000 0000000012334566666689999
Q ss_pred EEEccc
Q 003743 324 VIFDNL 329 (799)
Q Consensus 324 L~IDEi 329 (799)
|++||+
T Consensus 200 illDEp 205 (356)
T 3jvv_A 200 ILVGEM 205 (356)
T ss_dssp EEESCC
T ss_pred EecCCC
Confidence 999999
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.00053 Score=67.81 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=29.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
+...++|.|||||||||+++++|..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999886544
No 266
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.80 E-value=0.00086 Score=65.52 Aligned_cols=29 Identities=38% Similarity=0.737 Sum_probs=25.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+.+..|+|.|+||+||||+++.|++.++
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567799999999999999999999987
No 267
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.79 E-value=0.0044 Score=68.68 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecccccc-----
Q 003743 225 GTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL----- 299 (799)
Q Consensus 225 ~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s~l~~----- 299 (799)
+.+.+.+.+.|..++..... ..... ..|..++++||+|+||||++..||..+.... ..+..++|.....
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~--~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~D~~R~aa~eq 146 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAK--PIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCSDTWRPGAYHQ 146 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCC--CCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCCSSTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccc--ccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHH
Confidence 34455566777666664211 11111 2367799999999999999999999887543 2333344332211
Q ss_pred ---------------cchhhHHHHHHHHHHHHHhcCCcEEEEccccc
Q 003743 300 ---------------EKGPIIRQALSNFISEALDHAPSIVIFDNLDS 331 (799)
Q Consensus 300 ---------------~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~ 331 (799)
.........+...+..+......+++||..-.
T Consensus 147 L~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 147 LRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred HHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 01112223344556666655678999997743
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.0026 Score=64.54 Aligned_cols=39 Identities=31% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHh---CCCeEEEEecc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGP 577 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~---~~~~~i~i~~~ 577 (799)
|+++..-++++||||+|||+++..+|.. .+.+++.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4555667899999999999998877653 25566666543
No 269
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.78 E-value=0.0085 Score=66.37 Aligned_cols=57 Identities=26% Similarity=0.205 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCC
Q 003743 225 GTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK 283 (799)
Q Consensus 225 ~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~ 283 (799)
+.+.+.+.+.+..+++..... .... -+.+..+++.||+|+||||++..||..+....
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~-~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEP-NVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCC-CCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCccccc-cccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 344555666666666643111 1111 12467799999999999999999999886543
No 270
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.76 E-value=0.0023 Score=65.86 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=25.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
...+..++|.||||+||||+++.|++.++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567799999999999999999999986
No 271
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.76 E-value=0.00088 Score=72.60 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=59.4
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEecc-chhh---------hhhcccHHHHHHHHHHhHhcCCeEEEE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGP-ELLN---------KYIGASEQAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~-~l~~---------~~~g~se~~i~~~f~~a~~~~p~ILfi 608 (799)
...+++.||+|+||||+.++++..+ +..++.+..+ ++.. ..++.....+...+..|-...|.||++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3468899999999999999998765 3444443221 1110 011212234556777888899999999
Q ss_pred cccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 609 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 609 DEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
||+-. ......++... ..+..|+.|+...+.+
T Consensus 203 DEp~d-------------~e~~~~~~~~~-----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 203 GEMRD-------------LETIRLALTAA-----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCCS-------------HHHHHHHHHHH-----HTTCEEEEEESCSSHH
T ss_pred CCCCC-------------HHHHHHHHHHH-----hcCCEEEEEEccChHH
Confidence 99831 22333333332 1234567777776654
No 272
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.75 E-value=0.0018 Score=72.94 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=34.3
Q ss_pred ecCccCCCCCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 207 ERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 207 ~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
..|.++..+.+|+++ ......+++.+...+.. ..+.++|.||||||||+++.+++..+...
T Consensus 12 ~~~~~~~~p~~~~~L---n~~Q~~av~~~~~~i~~------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 12 SGLVPRGSHMTFDDL---TEGQKNAFNIVMKAIKE------------KKHHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ---------CCSSCC---CHHHHHHHHHHHHHHHS------------SSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCccccC---CHHHHHHHHHHHHHHhc------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 345555555566554 33333344444333321 12379999999999999999999988643
No 273
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.74 E-value=0.0013 Score=70.26 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=63.2
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---------------C----CeEEEEeccchh--h------hhhcc-----
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------------S----LRFISVKGPELL--N------KYIGA----- 586 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---------------~----~~~i~i~~~~l~--~------~~~g~----- 586 (799)
|+++..-++++||||+|||+++..+|... + .++++++...-+ . .-.|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45555678999999999999999988652 2 577777765421 1 00111
Q ss_pred ----------cHH----HHHHHHHHhHh-cCCeEEEEcccccccCCCCCCCCchhh--HHHHHHHhhccCccccCcEEEE
Q 003743 587 ----------SEQ----AVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTD--RVVNQFLTELDGVEVLTGVFVF 649 (799)
Q Consensus 587 ----------se~----~i~~~f~~a~~-~~p~ILfiDEid~l~~~r~~~~~~~~~--r~~~~ll~~ld~~~~~~~vlvi 649 (799)
+.. .+..+....+. ..+.+|+||.+..+....-.+.....+ ..+.+++..|..+....++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 111 12223333344 568899999999886421111111222 2455666555544444455555
Q ss_pred Ee
Q 003743 650 AA 651 (799)
Q Consensus 650 ~t 651 (799)
.+
T Consensus 254 ~~ 255 (322)
T 2i1q_A 254 VT 255 (322)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 274
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.72 E-value=0.0037 Score=69.29 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchh----------hhhh---------cccH-HHHHHHHHHhH
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL----------NKYI---------GASE-QAVRDIFSKAT 599 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~----------~~~~---------g~se-~~i~~~f~~a~ 599 (799)
+.-+++.||+|+||||++..+|..+ +..+..+.+.... .... +... ......+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4568899999999999999999765 5565555532110 0101 1111 22345566666
Q ss_pred hcCCeEEEEcccccc
Q 003743 600 AAAPCLLFFDEFDSI 614 (799)
Q Consensus 600 ~~~p~ILfiDEid~l 614 (799)
...+.+|+||....+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 667899999988554
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.72 E-value=0.0011 Score=64.71 Aligned_cols=28 Identities=46% Similarity=0.660 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH-hc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKS-LE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~-l~ 280 (799)
+.+..|+|+|+|||||||+++.|++. ++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34567999999999999999999998 66
No 276
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.72 E-value=0.0021 Score=64.82 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=41.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccc-------hhhhhhcccH-----HHHHHHHHHhHh----cCCeE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE-------LLNKYIGASE-----QAVRDIFSKATA----AAPCL 605 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~-------l~~~~~g~se-----~~i~~~f~~a~~----~~p~I 605 (799)
-++++||||+|||+++..++..+ +..++.+++.. +.++ .|... ....++++.+.. ..|.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 46778999999999888777654 55666654322 1111 12110 112234444433 45889
Q ss_pred EEEcccccc
Q 003743 606 LFFDEFDSI 614 (799)
Q Consensus 606 LfiDEid~l 614 (799)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999875
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.71 E-value=0.0016 Score=67.53 Aligned_cols=72 Identities=24% Similarity=0.475 Sum_probs=45.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEecc-chh---------hhhhcccHHHHHHHHHHhHhcCCeEE
Q 003743 541 RLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGP-ELL---------NKYIGASEQAVRDIFSKATAAAPCLL 606 (799)
Q Consensus 541 ~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~-~l~---------~~~~g~se~~i~~~f~~a~~~~p~IL 606 (799)
.+...+++.||+|+||||++++++..+ ...++....+ ++. ...+|.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 445568899999999999999999764 2333322211 100 00111112235666777766789999
Q ss_pred EEcccc
Q 003743 607 FFDEFD 612 (799)
Q Consensus 607 fiDEid 612 (799)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999973
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.71 E-value=0.00088 Score=65.42 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=28.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.+.-++|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 345689999999999999999999998887653
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.70 E-value=0.0029 Score=66.50 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
.+.-++|.||||+||||+++.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34568899999999999999999988555566765433
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.69 E-value=0.00064 Score=66.43 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=25.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.+..+.|.||||+||||+++.|++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 356677899999999999999999998644
No 281
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.69 E-value=0.00095 Score=72.91 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=26.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
.++++..++|+||+|+||||+++++++.+..
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3566778999999999999999999998763
No 282
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.69 E-value=0.015 Score=61.79 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=32.4
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
.|++++.-++|.|+||+|||+|+..+|....... .++++++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEEC
Confidence 4788888999999999999999999987654332 34555553
No 283
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.69 E-value=0.00094 Score=64.68 Aligned_cols=32 Identities=41% Similarity=0.677 Sum_probs=28.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
...++|+|+||+|||++++.++..++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45799999999999999999999998887654
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.68 E-value=0.0012 Score=64.00 Aligned_cols=27 Identities=44% Similarity=0.676 Sum_probs=24.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.|+|+|+||+||||+++.+++.++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999999987
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.68 E-value=0.0031 Score=66.28 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=24.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
..+..++|.||||+||||+++.+++.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999999874
No 286
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.66 E-value=0.001 Score=70.69 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=31.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.++|+||+|+|||++++.+|..++..++.++...++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 688999999999999999999999999888765543
No 287
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.63 E-value=0.001 Score=64.90 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=27.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHh-CCCeEEEEe
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAA-CSLRFISVK 575 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~-~~~~~i~i~ 575 (799)
...++|+|+||||||++++.+|.. ++++++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 346999999999999999999999 687776543
No 288
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.63 E-value=0.00097 Score=63.74 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
.++|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998886655
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.61 E-value=0.0015 Score=62.69 Aligned_cols=26 Identities=31% Similarity=0.709 Sum_probs=23.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..+.|.|||||||||+++.||+.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999987
No 290
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.60 E-value=0.0012 Score=63.57 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=27.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.++|.||||+|||+++++||..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887653
No 291
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.57 E-value=0.0012 Score=66.22 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=26.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.++.|+|.||||+||+|.|+.|++.++
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 356677889999999999999999999987
No 292
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.57 E-value=0.0027 Score=65.28 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
.+..++|.|+||+|||++++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999866667776554
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.57 E-value=0.0014 Score=62.63 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|||||||||+++.|++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.57 E-value=0.0017 Score=62.29 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=26.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
..+.|.|||||||||+++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 368999999999999999999999886654
No 295
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.56 E-value=0.0056 Score=60.02 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=58.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEecc---------chhhhhhc------------c------cHHHHH
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP---------ELLNKYIG------------A------SEQAVR 592 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~---------~l~~~~~g------------~------se~~i~ 592 (799)
...+++|+++|.|||++|-++|-.. |.++..+... .++... + . ......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHH
Confidence 3579999999999999998887543 6666666221 133322 1 0 123344
Q ss_pred HHHHHhHh----cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCC
Q 003743 593 DIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 655 (799)
Q Consensus 593 ~~f~~a~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~ 655 (799)
..+..++. ..+++|++||+-....-+ .. . ..+++..+. .+....-||.|+|.+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g---~l--~---~~ev~~~l~--~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYD---YL--P---LEEVISALN--ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTT---SS--C---HHHHHHHHH--TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCC---CC--C---HHHHHHHHH--hCcCCCEEEEECCCC
Confidence 55555533 567899999996542210 01 1 123444443 233445566678765
No 296
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.54 E-value=0.001 Score=63.71 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=28.3
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
+++|.|+||||||++++.||..++++++..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 7999999999999999999999999987643
No 297
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.54 E-value=0.0054 Score=69.34 Aligned_cols=76 Identities=20% Similarity=0.371 Sum_probs=49.4
Q ss_pred CCe-EEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEEEEecCCCC--ccChhhcCCCCcceeeecCCCC
Q 003743 602 APC-LLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD--LLDAALLRPGRLDRLLFCDFPS 678 (799)
Q Consensus 602 ~p~-ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~--~ld~al~r~gRf~~~i~~~~p~ 678 (799)
.|. +|+|||+..+... .... +..++..+-..-+.-++.+|.+|.+|. .++..++. .|...|.|...+
T Consensus 296 lP~ivlvIDE~~~ll~~-------~~~~-~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT-------VGKK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp CCEEEEEEETHHHHHHH-------HHHH-HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred CCcEEEEEeCHHHHHhh-------hhHH-HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 354 8999999887531 0112 222332221112333577777888887 48887877 788888999999
Q ss_pred HHHHHHHHH
Q 003743 679 PRERLDILK 687 (799)
Q Consensus 679 ~~~r~~Il~ 687 (799)
..+...|+.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 988888874
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.53 E-value=0.0018 Score=62.42 Aligned_cols=24 Identities=50% Similarity=0.749 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++|.|||||||||+++.||+.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999988
No 299
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.53 E-value=0.0011 Score=64.37 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=27.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
.++|.|+||+|||++++.||..++++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999876543
No 300
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.51 E-value=0.0046 Score=64.53 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=23.3
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHh
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAA 566 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~ 566 (799)
++....-++|+||||+|||+++..++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4555667899999999999999998863
No 301
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.51 E-value=0.005 Score=69.11 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=29.8
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEec
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKG 576 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~ 576 (799)
|++++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666779999999999999999888643 556776664
No 302
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.47 E-value=0.004 Score=64.31 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=30.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHh---CCCeEEEEeccchh
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGPELL 580 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~---~~~~~i~i~~~~l~ 580 (799)
.-++|.|+||+|||++++.++.. .|.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 35889999999999999999997 78888867665543
No 303
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.46 E-value=0.013 Score=65.62 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=27.7
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|++++.-++|.|+||+|||+|+..+|..+.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788888999999999999999999998764
No 304
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.45 E-value=0.0048 Score=63.69 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=23.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+||+||||+++.|++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999999854
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.45 E-value=0.0017 Score=64.11 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=23.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.|++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999987
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.44 E-value=0.0014 Score=63.53 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|+|||||||+++.|++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999999988
No 307
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.44 E-value=0.0016 Score=63.49 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=31.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
.+..+.|.||||+||||+++.++...+...+.++..++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34568899999999999999999987777777776554
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.41 E-value=0.0018 Score=62.26 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-Hhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAK-SLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~-~l~ 280 (799)
|..|+|.||||+||||+++.|++ .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 34689999999999999999998 344
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.0051 Score=60.32 Aligned_cols=138 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccch------------------------------------hhhh
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL------------------------------------LNKY 583 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l------------------------------------~~~~ 583 (799)
...+.|.||+|+||||+++.++..+ |..+--....++ ..+|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~~ 80 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQY 80 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccceE
Q ss_pred hcccHHHHHHHHHHhHh------cCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEEE--EEecCCC
Q 003743 584 IGASEQAVRDIFSKATA------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV--FAATSRP 655 (799)
Q Consensus 584 ~g~se~~i~~~f~~a~~------~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vlv--i~ttn~~ 655 (799)
.......-+..+..+.. ..|.||+|||++.+... .......+...+ .....+++ +..+.+.
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~--------~~~~~~~l~~~l---~~~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELF--------SQLFIQAVRQTL---STPGTIILGTIPVPKGK 149 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTT--------CSHHHHHHHHHH---HCSSCCEEEECCCCCSS
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccc--------cHHHHHHHHHHH---hCCCcEEEEEeecCCCC
Q ss_pred --CccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccC
Q 003743 656 --DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL 693 (799)
Q Consensus 656 --~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~ 693 (799)
..+|.-..+ .-.+++.+..-+.+...+-+-..+...
T Consensus 150 ~~~~vd~i~~~--~~~~i~~~~~~nr~~~~~~i~~~~~~~ 187 (189)
T 2i3b_A 150 PLALVEEIRNR--KDVKVFNVTKENRNHLLPDIVTCVQSS 187 (189)
T ss_dssp CCTTHHHHHTT--CCSEEEECCSSSGGGHHHHHHHHHTTS
T ss_pred chHHHHHHeec--CCcEEEEeChHhHHHHHHHHHHHHHHh
No 310
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.41 E-value=0.015 Score=56.91 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=22.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
...+++|+++|.||||+|-.+|-..-..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4569999999999999999988665433
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.41 E-value=0.0015 Score=62.25 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=25.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
-++|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8899887664
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.41 E-value=0.0019 Score=63.03 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=23.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.|++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999987
No 313
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.38 E-value=0.0095 Score=63.24 Aligned_cols=26 Identities=46% Similarity=0.745 Sum_probs=23.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..++|+||+|||||++++.||+.++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34699999999999999999999987
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.38 E-value=0.0018 Score=61.94 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
-.+|+|.|+|||||||+++.||+.++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999999998
No 315
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.38 E-value=0.002 Score=62.95 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.|++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999987
No 316
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.38 E-value=0.0036 Score=67.12 Aligned_cols=47 Identities=21% Similarity=0.404 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 223 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 223 g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
..+...+.+++.+...+... ...+++|+||||+|||+++++||+.++
T Consensus 3 ~~~~L~~~il~~l~~~i~~g-----------~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDN-----------YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTC-----------SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccC-----------CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34566667777666555311 234699999999999999999999987
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.36 E-value=0.002 Score=62.58 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
+..|+|.|||||||||+++.|++.++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356999999999999999999998873
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.36 E-value=0.0017 Score=66.87 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEecc
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 577 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~ 577 (799)
-+++.||||+|||++|+.||..++..++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999998877654
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.36 E-value=0.0022 Score=62.18 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=23.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|||||||||+++.|++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999887
No 320
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.36 E-value=0.027 Score=59.20 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=41.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEeccch-------hhhh---h------cccHHHHHHHHHHhHhc
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPEL-------LNKY---I------GASEQAVRDIFSKATAA 601 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~~l-------~~~~---~------g~se~~i~~~f~~a~~~ 601 (799)
.+..++|.||+|+||||++..+|..+ |..+..+.+... +..+ . ......++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 34568899999999999999998654 445555554221 0000 1 11223444555544 5
Q ss_pred CCeEEEEcc
Q 003743 602 APCLLFFDE 610 (799)
Q Consensus 602 ~p~ILfiDE 610 (799)
.|.+|+||-
T Consensus 182 ~~dlvIiDT 190 (296)
T 2px0_A 182 EYDHVFVDT 190 (296)
T ss_dssp GSSEEEEEC
T ss_pred CCCEEEEeC
Confidence 678999993
No 321
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.34 E-value=0.003 Score=63.29 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=24.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.||+.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999999987
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.33 E-value=0.0032 Score=62.20 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+..+.|.||+|+||||+++.|++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3466799999999999999999999886
No 323
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.31 E-value=0.0074 Score=63.86 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=44.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccchh-------hhh------------hcccH-HHHHHHHHHh
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-------NKY------------IGASE-QAVRDIFSKA 598 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l~-------~~~------------~g~se-~~i~~~f~~a 598 (799)
++.-+++.||+|+||||++..+|..+ +..+..+++.... ..| .|... ......+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44568899999999999999999765 4555544432111 001 01111 2223445566
Q ss_pred HhcCCeEEEEccccc
Q 003743 599 TAAAPCLLFFDEFDS 613 (799)
Q Consensus 599 ~~~~p~ILfiDEid~ 613 (799)
....|.+++||+.-.
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 677889999998753
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.31 E-value=0.0022 Score=61.31 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=27.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.++|.|+||+|||++++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999887653
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.31 E-value=0.0018 Score=63.30 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=28.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
..++|.|+||+||||+++.+|..++.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 46899999999999999999999998876543
No 326
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.30 E-value=0.0022 Score=66.09 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++|.|||||||||+++.||+.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 488999999999999999999987
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.30 E-value=0.0025 Score=62.93 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=27.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
..++|.|+||+|||++++.|+..++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4588999999999999999999999887654
No 328
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.29 E-value=0.0021 Score=64.03 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++|.||||+||+|.|+.||+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999999987
No 329
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.28 E-value=0.003 Score=60.21 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|||||||||+++.| +.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 5899999999999999999 7776
No 330
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.28 E-value=0.0035 Score=72.45 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=24.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
.+.+++.||||||||+++.+++..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3569999999999999999999887643
No 331
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.28 E-value=0.0034 Score=60.27 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..++|.||||+||||+++.+++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45699999999999999999999886
No 332
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.27 E-value=0.0025 Score=63.86 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=27.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
..++|.|+||+||||+++.||..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4689999999999999999999999876654
No 333
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.27 E-value=0.0023 Score=62.68 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=24.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.|++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999987
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.27 E-value=0.002 Score=64.92 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+..|+|.|||||||||+++.||+.++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999999887
No 335
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.27 E-value=0.0024 Score=69.72 Aligned_cols=73 Identities=23% Similarity=0.458 Sum_probs=46.3
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEecc-chh-h---hhh-----cccHHHHHHHHHHhHhcCCeE
Q 003743 540 LRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGP-ELL-N---KYI-----GASEQAVRDIFSKATAAAPCL 605 (799)
Q Consensus 540 ~~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~~-~l~-~---~~~-----g~se~~i~~~f~~a~~~~p~I 605 (799)
..+...+++.||+|+||||++++++..+ ...++.+..+ ++. . .++ |.....+...+..+-...|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 4455678999999999999999999865 2444443321 110 0 011 112223455666666678999
Q ss_pred EEEcccc
Q 003743 606 LFFDEFD 612 (799)
Q Consensus 606 LfiDEid 612 (799)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999984
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.002 Score=62.53 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=26.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
..++|.|+||+||||+++.+|+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3588999999999999999999998776543
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.26 E-value=0.0032 Score=60.17 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=23.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.|+|.|+|||||||+++.|++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999988
No 338
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.26 E-value=0.017 Score=60.79 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 225 GTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 225 ~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
+...+.+.+.+...+...... .. ...+..++|+||+|+||||++..+|..+..
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~~---~~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADKW---QE-PIHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGGS---CC-CCCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccc---cc-cCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344555556666666533211 11 234678999999999999999999998863
No 339
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.25 E-value=0.0098 Score=69.25 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=19.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHh
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAA 566 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~ 566 (799)
+.+++.|+||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999988776644
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.25 E-value=0.0024 Score=62.22 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=26.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
..++|.|+||+||||+++.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 358899999999999999999999887654
No 341
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.25 E-value=0.0043 Score=65.29 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=28.1
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEe
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVK 575 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~ 575 (799)
++.+..-++|.||||+|||++++.+|... |.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45556678999999999999999998754 43555544
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.25 E-value=0.0021 Score=64.85 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=27.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
..++|.|+||+||||+++.||..++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4689999999999999999999999877654
No 343
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.23 E-value=0.0029 Score=62.48 Aligned_cols=26 Identities=42% Similarity=0.776 Sum_probs=23.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.||||+||||+++.|++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999987
No 344
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.23 E-value=0.0039 Score=63.20 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.||+.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999987
No 345
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.23 E-value=0.0083 Score=67.07 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=29.8
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC----CCeEEEEec
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKG 576 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~----~~~~i~i~~ 576 (799)
|++++.-++++|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666779999999999999998887543 567777665
No 346
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.20 E-value=0.0023 Score=61.59 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=23.9
Q ss_pred ceeeecCCCCcHHHHHHHHHH-hCCCeEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAA-ACSLRFIS 573 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~-~~~~~~i~ 573 (799)
-++|.|+||+||||+++.++. ..+..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 588999999999999999998 56554443
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.18 E-value=0.003 Score=63.03 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=26.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.++|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998877655
No 348
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.005 Score=62.52 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=28.1
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHh----CCCeEEEEec
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAA----CSLRFISVKG 576 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~----~~~~~i~i~~ 576 (799)
|+++..-++++|+||+|||++|..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566667999999999999999776532 2566666654
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.16 E-value=0.0031 Score=64.46 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+..|+|.||||+||||+++.|++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999999887
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.16 E-value=0.0044 Score=60.20 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=23.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.|++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999987
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.16 E-value=0.0023 Score=61.90 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=22.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFI 572 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i 572 (799)
..++|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999999999877
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.15 E-value=0.0023 Score=62.78 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.-++|.|+||+||||+++.++..++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4689999999999999999999998776544
No 353
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.15 E-value=0.0028 Score=63.60 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=24.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+..|+|.|||||||||+++.||+.++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345699999999999999999999987
No 354
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.14 E-value=0.0032 Score=64.35 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..+.|.||||+||||+++.|++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999999887
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.14 E-value=0.0034 Score=61.92 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=27.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.-++|.|+||+||||+++.|+..++..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4689999999999999999999998777653
No 356
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.14 E-value=0.0032 Score=62.18 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+..+.|.||+||||||++++|++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567799999999999999999999986
No 357
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.12 E-value=0.0062 Score=60.48 Aligned_cols=28 Identities=36% Similarity=0.659 Sum_probs=25.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+..+.|.||+|+|||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566789999999999999999999986
No 358
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.12 E-value=0.0034 Score=62.96 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=30.6
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhh
Q 003743 541 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 581 (799)
Q Consensus 541 ~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~ 581 (799)
..++-++|.||||+||+|.|+.||+.++++. ++..+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 3445688899999999999999999997764 55556554
No 359
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.12 E-value=0.0031 Score=62.78 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=28.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.++|.||||+||+|.|+.||+.++++. ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998765 4555554
No 360
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.11 E-value=0.0032 Score=59.97 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=26.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.++|.|+||+|||++++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999887653
No 361
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.11 E-value=0.024 Score=63.24 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=27.4
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|++++.-++|.|+||+|||+|+..+|....
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3788888899999999999999999987764
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.11 E-value=0.0031 Score=60.07 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|+|||||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999987
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.11 E-value=0.0022 Score=62.03 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=20.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.|++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999999999999987
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.10 E-value=0.0035 Score=63.48 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=27.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
..++|.|+||+||||+++.||..++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4699999999999999999999999877654
No 365
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.09 E-value=0.0033 Score=62.03 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.|+|||||||+++.|++.++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999999887
No 366
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.09 E-value=0.0027 Score=61.72 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
.|+|.|+|||||||+++.|++.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999874
No 367
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.09 E-value=0.0028 Score=61.58 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCC
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACS 568 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~ 568 (799)
..++|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999886
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.09 E-value=0.028 Score=61.11 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=26.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.+..+.|.||+|||||||++.||+...
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 456777899999999999999999999875
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.08 E-value=0.0033 Score=62.98 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=27.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
..++|.|+||+||||+++.||..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3589999999999999999999999887655
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.08 E-value=0.0038 Score=62.53 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
..|+|.|+|||||||+++.||+.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999987
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.07 E-value=0.0027 Score=63.33 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|||||||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999887
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.06 E-value=0.0032 Score=62.73 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=26.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.++|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998877654
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.06 E-value=0.0031 Score=62.88 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|||||||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999987
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.05 E-value=0.0029 Score=64.68 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=28.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.+..++|.||||+||||+++.|++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345799999999999999999999998776544
No 375
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.04 E-value=0.0037 Score=61.65 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
..++|.|+||+|||++++.+++.++.+++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35889999999999999999999998766543
No 376
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.04 E-value=0.0038 Score=61.78 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=24.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
+..|+|.|+|||||||+++.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 356899999999999999999999874
No 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.03 E-value=0.026 Score=68.36 Aligned_cols=43 Identities=28% Similarity=0.180 Sum_probs=33.6
Q ss_pred cCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 003743 222 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKS 278 (799)
Q Consensus 222 ~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~ 278 (799)
+|.+..++.|.+.+... ...+-+.|+||+|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~--------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL--------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC--------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc--------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 78888888887766421 12456999999999999999999863
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.02 E-value=0.0054 Score=59.19 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
.+..+.|.|++||||||+++.+++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999988
No 379
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.02 E-value=0.0041 Score=60.45 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
..++|.|+||+|||++++.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3588999999999999999999998776654
No 380
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.99 E-value=0.0041 Score=59.71 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
..++|.||||+|||++++.++..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 458899999999999999999988876654
No 381
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0043 Score=60.16 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.+.|.||+|+|||||++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 356799999999999999999999764
No 382
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.98 E-value=0.0044 Score=61.11 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=26.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
+..+.|.||+|+||||++++++..+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4468899999999999999999988765543
No 383
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.97 E-value=0.02 Score=60.84 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=29.7
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEec
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 576 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~ 576 (799)
|+++..-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56666679999999999999999888543 456766664
No 384
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.96 E-value=0.031 Score=59.66 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcCCCcchhhh--hcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 227 TASDVINRIKVLLSPDSGLWFS--TYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 227 ~~~~i~~~l~~~l~~~~~~~~~--~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
..+-+.+.+..++.......+. ....+.+.-+.|.||+|+||||+++.||+.+...
T Consensus 99 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 99 IEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp HHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3444556666666643211110 1123557789999999999999999999988643
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.95 E-value=0.0043 Score=66.48 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=44.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEecc-cccc----cc------hhhHHHHHHHHHHHHHhcCC
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-RLSL----EK------GPIIRQALSNFISEALDHAP 321 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~s-~l~~----~~------~~~~~~~l~~~~~~a~~~~p 321 (799)
+.+..++|.||+|+||||+++++++.+.... ..+.++.. .+.. .. ++ ...+..+..+....|
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~----g~i~i~~~~e~~~~~~~~~i~~~~ggg---~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE----RIISIEDTEEIVFKHHKNYTQLFFGGN---ITSADCLKSCLRMRP 241 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTS----CEEEEESSCCCCCSSCSSEEEEECBTT---BCHHHHHHHHTTSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCC----cEEEECCeeccccccchhEEEEEeCCC---hhHHHHHHHHhhhCC
Confidence 3456799999999999999999999875321 12222211 1100 00 11 123344555666789
Q ss_pred cEEEEcccc
Q 003743 322 SIVIFDNLD 330 (799)
Q Consensus 322 ~IL~IDEiD 330 (799)
.+|++||.-
T Consensus 242 ~ilildE~~ 250 (330)
T 2pt7_A 242 DRIILGELR 250 (330)
T ss_dssp SEEEECCCC
T ss_pred CEEEEcCCC
Confidence 999999984
No 386
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.93 E-value=0.027 Score=60.89 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=26.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.+..+.|.||+|+|||||++.+++.+.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 467778899999999999999999998765
No 387
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.93 E-value=0.0037 Score=61.67 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
++.+..+.|.||+|+||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556779999999999999999999877
No 388
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.93 E-value=0.0042 Score=65.37 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=31.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchh
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 580 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~ 580 (799)
.-+++.||+|+|||+++..+|+.++..++..+.-.++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 3578899999999999999999999888887766554
No 389
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.92 E-value=0.0025 Score=68.37 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=26.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
+++|.||||+|||++++++|..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 69999999999999999999999887754
No 390
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.91 E-value=0.0045 Score=61.24 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
...++.++|.||||+||||+++.|++.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34566799999999999999999999874
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.91 E-value=0.0037 Score=62.72 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
..++|.||||+||||+++.||..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 468999999999999999999999876544
No 392
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.91 E-value=0.036 Score=63.63 Aligned_cols=166 Identities=12% Similarity=0.152 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHH----hCCC-----eEEEEeccc---h
Q 003743 512 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA----ACSL-----RFISVKGPE---L 579 (799)
Q Consensus 512 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~----~~~~-----~~i~i~~~~---l 579 (799)
.|.+..++.|.+.+.... -...+.+.++|++|+|||++|+.+++ .... -++.++... .
T Consensus 131 ~GR~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhccc----------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 388888888877664210 11234688999999999999999996 2221 233333210 1
Q ss_pred ---hhh---hhcc-------------cHHHHHHHHHHhHhcC-CeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccC
Q 003743 580 ---LNK---YIGA-------------SEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG 639 (799)
Q Consensus 580 ---~~~---~~g~-------------se~~i~~~f~~a~~~~-p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~ 639 (799)
... .+|. ....+...+...-... +.+|+||+++.. +.+ .+..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~------------~~~--~~~~---- 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE------------ETI--RWAQ---- 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH------------HHH--HHHH----
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc------------hhh--cccc----
Confidence 000 0111 1122334444443443 789999999763 111 1111
Q ss_pred ccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcc--cHHHHHHHCCCCc
Q 003743 640 VEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDV--DLEAIAHMTEGFS 712 (799)
Q Consensus 640 ~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~--~~~~la~~~~g~s 712 (799)
..+.-||.||....-.. .. . .....+.+++.+.++-.+++.......+..... ....|++.+.|..
T Consensus 263 ---~~gs~ilvTTR~~~v~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 263 ---ELRLRCLVTTRDVEISN-AA-S--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ---HTTCEEEEEESBGGGGG-GC-C--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ---cCCCEEEEEcCCHHHHH-Hc-C--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 12333445666432211 11 1 133567888889999888888764332211111 1345566666543
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.86 E-value=0.0057 Score=60.18 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=28.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC-CCeEEEEec
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKG 576 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~-~~~~i~i~~ 576 (799)
+..+.|.|+||+||||+++.++..+ +.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3468899999999999999999998 577776653
No 394
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.86 E-value=0.0066 Score=60.86 Aligned_cols=25 Identities=48% Similarity=0.775 Sum_probs=23.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
..+.|.||+||||||+++.+++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999987
No 395
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.86 E-value=0.015 Score=65.01 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=26.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
.+..+..++|.||+|+||||+++.|++.+..
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3556778999999999999999999998863
No 396
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.85 E-value=0.063 Score=59.81 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 294 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~ 294 (799)
|++++.-++|.|+||+|||+|+..+|....... .++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 788888899999999999999999887764332 34555543
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.84 E-value=0.0063 Score=59.71 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|.|.|+|||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 488999999999999999999998
No 398
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.81 E-value=0.0047 Score=61.18 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
.+..|+|.|+|||||||+++.|++.++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999998743
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.79 E-value=0.0047 Score=61.60 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=26.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.++|.|+||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998877655
No 400
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.78 E-value=0.0055 Score=60.77 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
.+..|+|.|+|||||||+++.|++.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999998743
No 401
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.77 E-value=0.0062 Score=58.78 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE 578 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~ 578 (799)
..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 457899999999999999999987 88988887543
No 402
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.77 E-value=0.017 Score=58.76 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++++||+|+|||.++.+++..++
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 499999999999999998888764
No 403
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.77 E-value=0.0066 Score=58.97 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
..+..++|.|+||+||||+++.+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34567999999999999999999999873
No 404
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.76 E-value=0.012 Score=57.99 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=28.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEeccch
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 579 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~~l 579 (799)
+.-+.|.||+|+||||+++++|..+ |...+.++..++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3468899999999999999999987 555455665444
No 405
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.75 E-value=0.0061 Score=59.29 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=27.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHhC---CCeEEEEe
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVK 575 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~---~~~~i~i~ 575 (799)
-+.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88888765
No 406
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.75 E-value=0.0053 Score=60.28 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=26.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
.+.|.|+||+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987664
No 407
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.75 E-value=0.005 Score=61.21 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+.-+.|.||+|+||||+++.|++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3466799999999999999999998875
No 408
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.74 E-value=0.0063 Score=57.81 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=26.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.+..+.|.||.|+|||||++.+++.+.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356677899999999999999999999983
No 409
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.74 E-value=0.0056 Score=61.57 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=26.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.++|.|+||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998766543
No 410
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.73 E-value=0.022 Score=68.12 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=34.3
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHH
Q 003743 506 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 565 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~ 565 (799)
..|.++.-.+.+.+.+......|......--...+.....+++.||+|+|||+++..++.
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 346666555666666665554443221110000112234699999999999997766654
No 411
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.73 E-value=0.0056 Score=60.42 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+++.+.|.||+|+|||||++.|++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999999764
No 412
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.73 E-value=0.014 Score=56.88 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
-|.|.|++||||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999983
No 413
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.72 E-value=0.023 Score=55.75 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.3
Q ss_pred CceeeecCCCCcHHHHHH
Q 003743 544 SNVLLYGPPGCGKTHIVG 561 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~ 561 (799)
+++++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.71 E-value=0.0063 Score=60.63 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|||||||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999887
No 415
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.71 E-value=0.0082 Score=58.38 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|.|.|+|||||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999983
No 416
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.71 E-value=0.011 Score=62.33 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 226 TTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 226 ~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
...+.+.+.+...+.......-..+.++.+..+.|.||+|+||||+++.+|+.+..
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44555666666666533100011223556778999999999999999999998863
No 417
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.71 E-value=0.0067 Score=60.80 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=26.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
..+.|.||+||||||+++.++..++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999877654
No 418
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.70 E-value=0.0081 Score=60.39 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|+|.|||||||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999987
No 419
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.70 E-value=0.0059 Score=65.41 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=47.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCC--CeEEEEeccchhh-----h---hhcccHHHHHHHHHHhHhcCCeEEEEcccc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLN-----K---YIGASEQAVRDIFSKATAAAPCLLFFDEFD 612 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~~l~~-----~---~~g~se~~i~~~f~~a~~~~p~ILfiDEid 612 (799)
+..+++.||+|+||||++++++.... ...+.+....... . ++.......+..+..|-...|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 45799999999999999999998773 2345554432110 1 120012345566777777889999999975
Q ss_pred c
Q 003743 613 S 613 (799)
Q Consensus 613 ~ 613 (799)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 4
No 420
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.69 E-value=0.0065 Score=59.79 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
+.+.-+.|.||+|+||||+++.|++.+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999985
No 421
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.69 E-value=0.057 Score=61.24 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=27.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
|++++.-++|.|+||+|||+|+..+|..+..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 7888889999999999999999999887653
No 422
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.67 E-value=0.022 Score=55.65 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHH-HHHHHHHHHhcc
Q 003743 254 LPGHILIHGPPGSGKT-SLAKAVAKSLEH 281 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT-~la~alA~~l~~ 281 (799)
.+.-+++|||.|+||| .|++++.+....
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3456889999999999 889998887653
No 423
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.66 E-value=0.035 Score=64.58 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+.+++.||||||||+++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999998887765
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.65 E-value=0.022 Score=60.68 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|+|.||+|||||+|+..||+.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 34699999999999999999999987
No 425
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.64 E-value=0.0072 Score=63.81 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=26.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
.++++..+.|+||+|+|||||++.|++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 47788889999999999999999999998
No 426
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.64 E-value=0.0061 Score=62.55 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=24.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..+.|.||+|+||||+++.||+.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999999999999998
No 427
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.63 E-value=0.0054 Score=60.51 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=26.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
.+.|.|++||||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887776544
No 428
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.63 E-value=0.004 Score=60.55 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=26.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCC---CeEEEEeccc
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPE 578 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~---~~~i~i~~~~ 578 (799)
.++|.|+||+||||+++.|++.++ .++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 478999999999999999999775 3355554433
No 429
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.63 E-value=0.037 Score=62.47 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEec
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 576 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~ 576 (799)
+..++++|+||+||||++..+|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4578999999999999999999765 566655554
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.63 E-value=0.0096 Score=60.32 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..+.|.|||||||||+++.||+.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999987
No 431
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.61 E-value=0.007 Score=59.49 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=23.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l 279 (799)
+..|.|.|+|||||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999987
No 432
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.61 E-value=0.019 Score=55.04 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.4
Q ss_pred CCceeeecCCCCcHHHHHHH
Q 003743 543 RSNVLLYGPPGCGKTHIVGA 562 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~a 562 (799)
+.-+.|.||+|+||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34588999999999999994
No 433
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.60 E-value=0.0076 Score=58.84 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=26.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhC---CCeEEEEec
Q 003743 546 VLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 576 (799)
Q Consensus 546 vLL~GppGtGKT~la~alA~~~---~~~~i~i~~ 576 (799)
+.|.|++||||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6899999999999999999998 888876644
No 434
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.57 E-value=0.0067 Score=60.85 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
.++.+..+.|.||+|+|||||++.|++.+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35667789999999999999999999976
No 435
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.57 E-value=0.0063 Score=59.98 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.|.|.|++||||||+++.|++ ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 489999999999999999999 76
No 436
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.54 E-value=0.008 Score=59.77 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+..++|.|+||+||||+++.|++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566799999999999999999999886
No 437
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.52 E-value=0.042 Score=62.01 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 227 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 227 ~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
..+.+.+.+..++......+ . ..-..++.|+|+|+||+||||++..||..+...
T Consensus 75 ~~~~v~~eL~~ll~~~~~~~-~-~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 75 IQHAVFKELVKLVDPGVKAW-T-PTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp HHHHHHHHHHHHHCCCCCCC-C-CCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchh-c-cccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44555566666665432111 0 001345679999999999999999999888643
No 438
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.51 E-value=0.0085 Score=61.46 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
...+.|.|++|+||||+++.+|..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 347999999999999999999999999887643
No 439
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.44 E-value=0.0079 Score=58.55 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+.|.||+|+||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999875
No 440
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.44 E-value=0.066 Score=53.13 Aligned_cols=58 Identities=28% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCCCCCCChHHHHHHHHHHhhc-cCCChh-HHhhCCCCCCCceeeecCCCCcHHHHHHHHHH
Q 003743 506 SGWDDVGGLTDIQNAIKEMIEL-PSKFPN-IFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 565 (799)
Q Consensus 506 ~~~~~i~g~~~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~vLL~GppGtGKT~la~alA~ 565 (799)
..|.+++-.+.+.+.+.+.--. +..+.. .+.. +.....+++.+|+|+|||..+-..+-
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCchhhhhhHHHH
Confidence 3477766556666666552111 111110 0000 01135799999999999986655543
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.43 E-value=0.017 Score=62.50 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 225 GTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 225 ~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
+...+-+.+.+...+.......-..+.++.+..+.|+||+|+||||+++.||+.+..
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 344555666666666543100011233556778999999999999999999998863
No 442
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.39 E-value=0.0096 Score=60.31 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=26.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
..+.+.||||+|||++++.+|..++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999977654
No 443
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.057 Score=54.47 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=17.5
Q ss_pred CCceeeecCCCCcHHHHHHHHH
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAA 564 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA 564 (799)
...+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3479999999999998665554
No 444
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.38 E-value=0.0075 Score=64.28 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=31.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
.-++|.||+|+|||+++..||+.++..+|..+.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 358899999999999999999999998888776544
No 445
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.37 E-value=0.051 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHh
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAA 566 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~ 566 (799)
.++++.+|+|+|||.++..++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999988777754
No 446
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.36 E-value=0.0089 Score=58.37 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
|.|+|.||+|+|||||++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4599999999999999999988764
No 447
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.36 E-value=0.055 Score=57.56 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=26.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
...++.++++||+|+||||++..||..+...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4567789999999999999999999988643
No 448
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.35 E-value=0.019 Score=60.17 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=25.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
..+..|.|.||+|+||||+++.|++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34567899999999999999999999873
No 449
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.35 E-value=0.0095 Score=59.06 Aligned_cols=29 Identities=14% Similarity=0.464 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
++.+..+.|.||+|+|||||++.|++.+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56677799999999999999999999874
No 450
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.35 E-value=0.0087 Score=59.11 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 7877764
No 451
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.34 E-value=0.015 Score=64.33 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+.-|+|+|+||+||||+++.+++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567799999999999999999998876
No 452
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.33 E-value=0.019 Score=56.12 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=40.8
Q ss_pred ceeeecCCCCcHH-HHHHHHHHhC--CCeEEEEeccchhhhhh-------ccc-----HHHHHHHHHHhHhcCCeEEEEc
Q 003743 545 NVLLYGPPGCGKT-HIVGAAAAAC--SLRFISVKGPELLNKYI-------GAS-----EQAVRDIFSKATAAAPCLLFFD 609 (799)
Q Consensus 545 ~vLL~GppGtGKT-~la~alA~~~--~~~~i~i~~~~l~~~~~-------g~s-----e~~i~~~f~~a~~~~p~ILfiD 609 (799)
=.++|||.|+||| .|.+++.+.. +..++.+++. +-.+|. |.. .....++++.. ....+|+||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIlID 98 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGID 98 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEEEE
Confidence 3678999999999 8888887643 6777777644 111111 100 01112233332 235699999
Q ss_pred ccccc
Q 003743 610 EFDSI 614 (799)
Q Consensus 610 Eid~l 614 (799)
|+.-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99887
No 453
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.31 E-value=0.0078 Score=59.13 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=26.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
.+.|+|++||||||+++.+++.+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4779999999999999999999898876543
No 454
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.29 E-value=0.036 Score=60.20 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=21.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC 567 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~ 567 (799)
..-+.|.||+||||||+.+++|...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999999865
No 455
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.28 E-value=0.0081 Score=58.46 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l 279 (799)
..+.|.||+|+||||+++.|++.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 357899999999999999999854
No 456
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.27 E-value=0.0085 Score=59.29 Aligned_cols=28 Identities=43% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l 279 (799)
++.+..+.|.||||+||||+++.|++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3455678999999999999999999876
No 457
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.27 E-value=0.015 Score=61.23 Aligned_cols=27 Identities=48% Similarity=0.716 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+.-++|.||+|+|||+|+..+|+.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 345688999999999999999999987
No 458
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.27 E-value=0.07 Score=59.20 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC-CceeeEEEEEecc
Q 003743 227 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCS 295 (799)
Q Consensus 227 ~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~-~~~~~~~~~v~~s 295 (799)
..+-+.+.+..++......+ ...-..++.++++|++|+||||++..||..+... . ..+..+++.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~--~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G---~kVllvd~D 138 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTL--NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK---KKVLVVSAD 138 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCC--CCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSC---CCEEEEECC
T ss_pred HHHHHHHHHHHHhccccccc--cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcC---CeEEEEecC
Confidence 34445555655665331111 1111346789999999999999999999988754 3 334445554
No 459
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.26 E-value=0.015 Score=59.70 Aligned_cols=27 Identities=44% Similarity=0.751 Sum_probs=24.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+..+.|.||+||||||+++.||+.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345699999999999999999999988
No 460
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.25 E-value=0.01 Score=58.72 Aligned_cols=28 Identities=50% Similarity=0.622 Sum_probs=24.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+..+.|.||+|+||||+++.+++.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456689999999999999999999876
No 461
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.25 E-value=0.026 Score=62.35 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
++..++|.||+|+||||+++++++.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3456899999999999999999999864
No 462
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.21 E-value=0.069 Score=64.60 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKS 278 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~ 278 (799)
.++.+..++|.||.|+||||+.+.++..
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 4456678999999999999999998754
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.21 E-value=0.011 Score=58.30 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=27.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
.+.+.|++|+|||++++.+|..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999998877544
No 464
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.18 E-value=0.02 Score=59.33 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHhCCCe--EEEEeccchhhhhhcccHHHH--------------------------
Q 003743 540 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--FISVKGPELLNKYIGASEQAV-------------------------- 591 (799)
Q Consensus 540 ~~~~~~vLL~GppGtGKT~la~alA~~~~~~--~i~i~~~~l~~~~~g~se~~i-------------------------- 591 (799)
+.+..-+.|.||+|+||||++++++....-. -+.+++.++...-.......+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Q ss_pred -----------------------------------HHHHHHhHhc------CCeEEEEcccccccCCCCCCCCchhhHHH
Q 003743 592 -----------------------------------RDIFSKATAA------APCLLFFDEFDSIAPKRGHDNTGVTDRVV 630 (799)
Q Consensus 592 -----------------------------------~~~f~~a~~~------~p~ILfiDEid~l~~~r~~~~~~~~~r~~ 630 (799)
+-.+..|-.. .|.+|++|| ...+......
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDE----------Pts~LD~~~~ 183 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE----------PTSALDLYHQ 183 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECC----------CCSSCCHHHH
T ss_pred CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC----------ccccCCHHHH
Q ss_pred HHHHhhccCccccCcEEEEEecCCCCcc
Q 003743 631 NQFLTELDGVEVLTGVFVFAATSRPDLL 658 (799)
Q Consensus 631 ~~ll~~ld~~~~~~~vlvi~ttn~~~~l 658 (799)
..+...+..+....+..||.+|.+.+.+
T Consensus 184 ~~i~~~l~~l~~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCHHHH
No 465
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.18 E-value=0.013 Score=57.78 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCC--eEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSL--RFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~--~~i~i 574 (799)
.-++|.|+||+||||+++.|+..++. +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 35889999999999999999998876 35443
No 466
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.17 E-value=0.012 Score=61.90 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=27.7
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 250 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 250 ~g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+++.+.-++|.||||+|||+|++.+|..+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677888899999999999999999998875
No 467
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.17 E-value=0.015 Score=59.64 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccCCc--eeeEEEEEecccccc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCCSRLSL 299 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~~~--~~~~~~~v~~s~l~~ 299 (799)
.+..|.|.|++||||||+++.|++.++.... ....+..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 3456999999999999999999998873200 001244566666553
No 468
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.14 E-value=0.01 Score=60.45 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=26.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCCeEE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSLRFI 572 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~~~i 572 (799)
+..+.|.||||+||||+++.+++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356899999999999999999998887544
No 469
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.12 E-value=0.048 Score=60.77 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=30.8
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEecc
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 577 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~ 577 (799)
|++++.-+++.|+||+|||+++-.+|... +.+++.++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56677779999999999999998887644 6677777643
No 470
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.12 E-value=0.0092 Score=57.31 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHH
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKA 274 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~a 274 (799)
++.+.-+.|+||+|+|||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45677799999999999999995
No 471
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.12 E-value=0.013 Score=58.95 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=24.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 251 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 251 g~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
..+.+..+.|.||+|+|||||++.|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356777899999999999999999999864
No 472
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.09 E-value=0.048 Score=54.85 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.4
Q ss_pred CceeeecCCCCcHHHHHH
Q 003743 544 SNVLLYGPPGCGKTHIVG 561 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~ 561 (799)
+++++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 579999999999998543
No 473
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.09 E-value=0.033 Score=61.77 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhcc
Q 003743 227 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 281 (799)
Q Consensus 227 ~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~ 281 (799)
..+.+.+.+..++......|-. .-..++.++++|+||+||||++..||..+..
T Consensus 73 ~~~~~~~~l~~ll~~~~~~~~~--~~~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 73 IIKIVYEELVKLLGEEAKKLEL--NPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCC--CSSSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCccc--cCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444556666666533111100 1123567999999999999999999988753
No 474
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.07 E-value=0.015 Score=57.36 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.++.+.|.||+|+|||||+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999998764
No 475
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.05 E-value=0.017 Score=56.87 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+.|.|++||||||+++.||+.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999987
No 476
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.04 E-value=0.013 Score=61.69 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=29.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccch
Q 003743 545 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 579 (799)
Q Consensus 545 ~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l 579 (799)
-+++.||+|+|||+++..+|..++..++..+.-.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 47889999999999999999999887777665443
No 477
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.03 E-value=0.014 Score=57.75 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHhCC
Q 003743 540 LRLRSNVLLYGPPGCGKTHIVGAAAAACS 568 (799)
Q Consensus 540 ~~~~~~vLL~GppGtGKT~la~alA~~~~ 568 (799)
+..+.-++|.||||+||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34456789999999999999999999885
No 478
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.03 E-value=0.013 Score=57.47 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
..|.|.|++||||||+++.+++.++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3488999999999999999999877
No 479
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.02 E-value=0.005 Score=60.96 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=23.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCC
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACSL 569 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~~ 569 (799)
+.-++|.|+||+||||+++.|+..++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999999987643
No 480
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.02 E-value=0.11 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHhC
Q 003743 542 LRSNVLLYGPPGCGKTHIVGAAAAAC 567 (799)
Q Consensus 542 ~~~~vLL~GppGtGKT~la~alA~~~ 567 (799)
++.-+.|.||+|+||||+++.+|..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999865
No 481
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.00 E-value=0.061 Score=53.52 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=15.0
Q ss_pred CceeeecCCCCcHHHHH
Q 003743 544 SNVLLYGPPGCGKTHIV 560 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la 560 (799)
.++++.+|+|+|||..+
T Consensus 52 ~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 57999999999999763
No 482
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.99 E-value=0.012 Score=58.14 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 003743 257 HILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 257 ~vLL~GppGtGKT~la~alA~~l~ 280 (799)
.+.|.||+||||||+++.+++ ++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 488999999999999999998 65
No 483
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.99 E-value=0.015 Score=57.03 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=26.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEEe
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 575 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i~ 575 (799)
..+.|.|++|||||++++.||.. |.+++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 87766533
No 484
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.99 E-value=0.11 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.1
Q ss_pred CceEEEECCCCCcHHHHHHHHH
Q 003743 255 PGHILIHGPPGSGKTSLAKAVA 276 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA 276 (799)
++.+++.||+|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5679999999999998766544
No 485
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.97 E-value=0.074 Score=55.90 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 227 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 227 ~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
..+-+.+.+...++.... ....+..+ +..+++.|++|+||||++..+|..+...
T Consensus 72 ~~~~~~~~l~~~~~~~~~-~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 72 FIKIVYDELSNLFGGDKE-PKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp HHHHHHHHHHHHTTCSCC-CCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccc-cccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344455666666653310 00111223 6678899999999999999999888643
No 486
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.97 E-value=0.017 Score=57.61 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=25.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 574 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~i 574 (799)
.-+.|.|++|+||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3588999999999999999998 88776654
No 487
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.95 E-value=0.019 Score=58.93 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCeEEE
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 573 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~~i~ 573 (799)
..+.|.||+|+||||+++.+|..+|..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 458899999999999999999999987653
No 488
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.93 E-value=0.016 Score=59.15 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=25.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 252 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 252 ~~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
++.+.-+-|.||+|+||||+++.|++.++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45566789999999999999999999886
No 489
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.93 E-value=0.045 Score=58.58 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=23.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhC-----CCeEEEEecc
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGP 577 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~-----~~~~i~i~~~ 577 (799)
.++++.+|+|+|||..+-..+... +...+.+.+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~ 83 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPT 83 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence 579999999999998765544332 4455555443
No 490
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.93 E-value=0.017 Score=65.51 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=46.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCC--CeEEEEeccc-hhh---hh--------hcccHHHHHHHHHHhHhcCCeEEEE
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPE-LLN---KY--------IGASEQAVRDIFSKATAAAPCLLFF 608 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~~--~~~i~i~~~~-l~~---~~--------~g~se~~i~~~f~~a~~~~p~ILfi 608 (799)
+.++++.||+|+||||++++++..+. ...+.+.... +.- .+ ++.....+...+..+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 34699999999999999999998773 3455554432 210 00 0111123556666677788999999
Q ss_pred cccc
Q 003743 609 DEFD 612 (799)
Q Consensus 609 DEid 612 (799)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9973
No 491
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.92 E-value=0.034 Score=61.74 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=27.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEec
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 576 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~ 576 (799)
+..++++|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4579999999999999999999865 455555554
No 492
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.89 E-value=0.018 Score=61.70 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHh---CCCeEEEEeccchhhhhh-------------------------------
Q 003743 539 PLRLRSNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGPELLNKYI------------------------------- 584 (799)
Q Consensus 539 ~~~~~~~vLL~GppGtGKT~la~alA~~---~~~~~i~i~~~~l~~~~~------------------------------- 584 (799)
|+++..-+++.|+||+|||+++..+|.. .+.++..++...-.....
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Q ss_pred ---------------cccHHHHHHHHHHhHhc--CCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCccccCcEE
Q 003743 585 ---------------GASEQAVRDIFSKATAA--APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVF 647 (799)
Q Consensus 585 ---------------g~se~~i~~~f~~a~~~--~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~~~vl 647 (799)
+.+-..++...+..... .+.+|+||-+..+..... ......-+..+...|..+...-++.
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~---~~~r~~ei~~isr~LK~lAkel~vp 198 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA---TKERHEQIAEISRELKTLARELEIP 198 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH---HHHCCCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC---CCChHHHHHHHHHHHHHHHHHcCCe
Q ss_pred EEEec
Q 003743 648 VFAAT 652 (799)
Q Consensus 648 vi~tt 652 (799)
||+.+
T Consensus 199 Vi~ls 203 (338)
T 4a1f_A 199 IIALV 203 (338)
T ss_dssp EEEEE
T ss_pred EEEEE
No 493
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.89 E-value=0.015 Score=56.87 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 255 PGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 255 ~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+..|.|.|++||||||+++.|++. +
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g 32 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-G 32 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-T
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-C
Confidence 456999999999999999999997 5
No 494
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.88 E-value=0.028 Score=55.39 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=24.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+..+.|.||+|+||||+++.+++.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456799999999999999999999875
No 495
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.88 E-value=0.024 Score=57.40 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=25.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhc
Q 003743 253 PLPGHILIHGPPGSGKTSLAKAVAKSLE 280 (799)
Q Consensus 253 ~~~~~vLL~GppGtGKT~la~alA~~l~ 280 (799)
+.+..+.|.|++|||||++++.|++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456799999999999999999999987
No 496
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.88 E-value=0.12 Score=54.13 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhccC
Q 003743 254 LPGHILIHGPPGSGKTSLAKAVAKSLEHH 282 (799)
Q Consensus 254 ~~~~vLL~GppGtGKT~la~alA~~l~~~ 282 (799)
.+..+.++|++|+||||++..+|..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45678889999999999999999988643
No 497
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.87 E-value=0.019 Score=58.83 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=30.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHhCCCe--------EEEEeccchh
Q 003743 544 SNVLLYGPPGCGKTHIVGAAAAACSLR--------FISVKGPELL 580 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~alA~~~~~~--------~i~i~~~~l~ 580 (799)
.-+.|.|++|+|||++|+.|+..++.+ ++.++..+++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 358899999999999999999999876 3456666654
No 498
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.86 E-value=0.021 Score=55.32 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=27.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhC---CCeEEEEecc
Q 003743 543 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 577 (799)
Q Consensus 543 ~~~vLL~GppGtGKT~la~alA~~~---~~~~i~i~~~ 577 (799)
+..++|.|+||+|||++++.++..+ +.++..++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 4468899999999999999999876 4445555543
No 499
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.84 E-value=0.029 Score=55.86 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.7
Q ss_pred CceeeecCCCCcHHHHHHH
Q 003743 544 SNVLLYGPPGCGKTHIVGA 562 (799)
Q Consensus 544 ~~vLL~GppGtGKT~la~a 562 (799)
..+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999986433
No 500
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.82 E-value=0.019 Score=60.32 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Q 003743 256 GHILIHGPPGSGKTSLAKAVAKSL 279 (799)
Q Consensus 256 ~~vLL~GppGtGKT~la~alA~~l 279 (799)
..|+|.|+|||||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999864
Done!