Query 003745
Match_columns 798
No_of_seqs 297 out of 1703
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 11:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1091 Ypt/Rab-specific GTPas 100.0 6E-100 1E-104 839.2 24.4 560 25-787 23-590 (625)
2 KOG4567 GTPase-activating prot 100.0 3.3E-56 7.3E-61 466.7 22.1 296 29-442 40-364 (370)
3 KOG1092 Ypt/Rab-specific GTPas 100.0 6E-42 1.3E-46 370.2 17.2 291 25-446 187-481 (484)
4 smart00164 TBC Domain in Tre-2 100.0 4.4E-36 9.5E-41 296.9 17.5 194 24-364 2-198 (199)
5 PF00566 RabGAP-TBC: Rab-GTPas 100.0 7.7E-32 1.7E-36 266.7 23.5 170 109-406 45-214 (214)
6 KOG2058 Ypt/Rab GTPase activat 100.0 1.2E-32 2.7E-37 304.4 19.1 229 24-423 154-384 (436)
7 COG5210 GTPase-activating prot 100.0 1.7E-30 3.6E-35 294.0 21.0 230 24-420 210-441 (496)
8 KOG2224 Uncharacterized conser 100.0 1E-29 2.2E-34 274.7 17.2 290 29-443 438-734 (781)
9 KOG1093 Predicted protein kina 100.0 1.5E-27 3.4E-32 265.6 18.2 201 111-439 391-591 (725)
10 KOG2223 Uncharacterized conser 99.9 3.2E-26 7E-31 248.6 17.7 193 111-432 356-549 (586)
11 KOG2222 Uncharacterized conser 99.9 2.8E-25 6.2E-30 242.5 13.2 283 26-484 170-459 (848)
12 KOG2197 Ypt/Rab-specific GTPas 99.9 6.2E-24 1.3E-28 240.2 11.5 266 29-445 180-448 (488)
13 KOG2595 Predicted GTPase activ 99.8 2.5E-20 5.3E-25 199.0 12.5 202 112-442 98-304 (395)
14 KOG4347 GTPase-activating prot 99.8 5.1E-20 1.1E-24 208.8 12.4 182 111-422 244-425 (671)
15 KOG4436 Predicted GTPase activ 99.8 2.2E-19 4.7E-24 206.4 15.9 185 112-424 623-809 (948)
16 KOG1102 Rab6 GTPase activator 99.8 3.6E-19 7.8E-24 197.5 12.0 181 112-423 187-369 (397)
17 KOG2221 PDZ-domain interacting 99.5 5.6E-14 1.2E-18 143.6 5.6 123 111-339 143-267 (267)
18 KOG3636 Uncharacterized conser 99.3 8.6E-12 1.9E-16 137.5 9.8 136 263-437 130-270 (669)
19 KOG4436 Predicted GTPase activ 98.9 6.4E-09 1.4E-13 121.4 11.4 251 16-436 172-438 (948)
20 KOG1648 Uncharacterized conser 97.8 9.5E-07 2.1E-11 99.3 -5.1 56 112-169 608-663 (813)
21 KOG2801 Probable Rab-GAPs [Int 97.1 0.0046 9.9E-08 66.9 12.1 81 333-438 208-293 (559)
22 PF14961 BROMI: Broad-minded p 96.7 0.033 7.1E-07 69.6 15.6 123 296-442 1156-1281(1296)
23 KOG2197 Ypt/Rab-specific GTPas 55.5 11 0.00023 44.5 3.6 48 24-72 75-122 (488)
No 1
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-100 Score=839.19 Aligned_cols=560 Identities=51% Similarity=0.800 Sum_probs=480.1
Q ss_pred cCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCcccc
Q 003745 25 SGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRF 104 (798)
Q Consensus 25 ~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~~ 104 (798)
+.|+..+|+++||++|||+|.+.++| ...+++.|..|..+|+++++|||..+++ +++|+.++|||+++++|.|++|
T Consensus 23 dlr~s~~Rgv~Wrl~L~vLp~~~ss~---id~~~~~ra~~r~~r~~~L~dPh~~k~~-~s~d~~idnPLSq~~~S~W~rf 98 (625)
T KOG1091|consen 23 DLRFSNLRGVRWRLLLGVLPSENSSW---IDNLRRLRANYRRLRRRLLIDPHNLKEN-HSPDLPIDNPLSQNPQSVWNRF 98 (625)
T ss_pred chhhhhhhhHHHHHhheecCCCchhH---HHHHHHHhhhhhccccccccCccccccc-cCCCcccCCccccCCCchhhhh
Confidence 55789999999999999999997763 3446678888999999999999999877 8899999999999999999999
Q ss_pred CCChHHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccc
Q 003745 105 FRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHE 184 (798)
Q Consensus 105 F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~ye 184 (798)
|+|+|+++.|++||+||||+++.|||.+.+|.||+|||++||+.||.+||+||||||+||++||++.|.++|.++++.
T Consensus 99 F~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~-- 176 (625)
T KOG1091|consen 99 FRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSES-- 176 (625)
T ss_pred cCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhH
Q 003745 185 DHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEH 264 (798)
Q Consensus 185 d~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~Ea 264 (798)
+|+.+.|.|.|.+|+|+|+++.+ + .++.|.+|.++|+||.+++.++++++++||+
T Consensus 177 -----~~~~l~f~E~d~iy~~~y~k~d~------------------d--n~~lqs~lmls~~~~~e~e~g~~~~e~~ie~ 231 (625)
T KOG1091|consen 177 -----LFDKLGFEERDVIYNFLYLKTDL------------------D--NTELQSVLMLSDEYGYEEELGIVLSEKLIEH 231 (625)
T ss_pred -----hhhhcCcchhhhhhhHHHHhhhc------------------c--chhHHHHHHhhhccccccCcceecCcccCCc
Confidence 68889999999999999998642 1 1678999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhC
Q 003745 265 DAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFG 344 (798)
Q Consensus 265 DAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFa 344 (798)
|+|++|+++|.. +|++.+++..++++|..+|+.||.||.++||+||||++||+|+||+
T Consensus 232 day~~~d~l~~~----------------------l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFG 289 (625)
T KOG1091|consen 232 DAYVMFDALMPG----------------------LPPVFEANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFG 289 (625)
T ss_pred Ccccchhhhccc----------------------chhHHHHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 999999999873 6789999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHH-HHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCC
Q 003745 345 REFSLGDLLIIWD-EIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 423 (798)
Q Consensus 345 REFpL~dlLrIWD-~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~ 423 (798)
|||||.++|.||| ++|+ ++||+.++.||+||||+++|+.||..++ ..||++|+|||.
T Consensus 290 REfpL~dLLiVWD~~l~~---------------------d~pr~~Lv~~m~VsmLL~IRd~Llss~~-~tcL~~Lm~yP~ 347 (625)
T KOG1091|consen 290 REFPLQDLLIVWDHVLIF---------------------DSPRGILVACMFVSMLLYIRDSLLSSEY-QTCLQYLMNYPE 347 (625)
T ss_pred chhHHHHHHHHhhhhhhc---------------------cCchHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHhcCCC
Confidence 9999999999999 5554 4578899999999999999999999998 459999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCceecccCCCCCCCCCCCCCCCCCCchhhhHHHHHhHHHHhh
Q 003745 424 NINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQR 503 (798)
Q Consensus 424 ~iDv~~LI~kA~~L~~~~~~~~~s~~~~~~~~~~~~s~~~~~r~~~~~~~~~~p~~p~~~~~~~~we~~~r~l~~~~~~~ 503 (798)
++|++++|++|+.|+. +|.+++.+++|.++. +.++.+|+.+.|.+||+.+||+++++..+.
T Consensus 348 ~~Dv~~~iekAl~l~~----------------~~~K~n~~p~~~~~n---sf~~~s~~~isp~~~w~~k~r~~~~~nse~ 408 (625)
T KOG1091|consen 348 IIDVDKFIEKALHLQK----------------LFPKSNAKPARDNSN---SFSDLSPVGISPCSYWEGKWRVLPRANSEE 408 (625)
T ss_pred cCcHHHHHHHHHHHHH----------------hcccccccccCCCcc---cccccccccCChhhhcccccCCCccccccc
Confidence 9999999999999988 344455667887765 678889999999999999999999999887
Q ss_pred cccCCCCCcc-ccchhhhhhhhcccccccCCCCcccCCCCccCc-chhhhhhHHHHhhhhCCcccccccccccccccCCC
Q 003745 504 HDSSGKQNQT-QKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSR-SSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQ 581 (798)
Q Consensus 504 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (798)
...+..+.++ +|+.|.. ..+.|+++||++ |++..| +++.|.++++++++++.
T Consensus 409 ~~~~~sps~~~k~~~~~~---~~~~r~~~D~S~-----~~~~~k~~~~~R~~~~~~~~~l~t------------------ 462 (625)
T KOG1091|consen 409 SSMKISPSPIIKKKPVLQ---MKLARLTIDPSR-----GSSEAKLSSSPRVLLLDLKEQLST------------------ 462 (625)
T ss_pred cccccCCCcccccCcHHH---HHHHHhhcCCcc-----ccccccCCcchhhhhcccccccCC------------------
Confidence 7666666554 5888876 446699999999 555555 78999999999988851
Q ss_pred CchhhhhhhcccccccccccCCcccccCCCCCCCCcccccCCCCCCCCCCCCCCccccccccc-CCCcccccccCCCC--
Q 003745 582 PSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVAS-NSSVDENDRQSHTM-- 658 (798)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 658 (798)
|.+|...+| +.+.|.+ +.|..+.+..++++
T Consensus 463 -----------------------------------------p~~~d~~~~------~~s~v~~~q~s~lq~~l~~kd~~~ 495 (625)
T KOG1091|consen 463 -----------------------------------------PLSPDEDAN------EASTVSSIQPSKLQEDLSTKDQVT 495 (625)
T ss_pred -----------------------------------------CCCcchhhh------hhhhhhhcchHHHHhhhcccchhh
Confidence 333323332 3445554 77777777777654
Q ss_pred -CCCCCCCCCCCCCCcccCCCCCCcccccchhhhccccccchhhhhcCCCCccccccccCCcccccccccccccCCCCCC
Q 003745 659 -PESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSK 737 (798)
Q Consensus 659 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (798)
+.+.||+|+.++.+.. ..-.-++|+++|+||||||+||+..+|||++...
T Consensus 496 ~~~~~~l~i~~~~~~~~----------~~~~~~~k~~~~~~q~~~~l~~~l~~~etk~~~~------------------- 546 (625)
T KOG1091|consen 496 SQVNGPLEISRTLDGKS----------VLITKEDKLLSGLFQRLRKLGRTLSAEETKKLNT------------------- 546 (625)
T ss_pred hhcCCcccccccCCcch----------hhhHHHHHhhhHHHHHHHHhCchhcccccccCCC-------------------
Confidence 5689999999876610 0011178999999999999999999999822211
Q ss_pred CCCCCCCCCCCCCC-CCCcccchhHHHhHHhhhHHHHHHHHHHHHHHhhhh
Q 003745 738 GASSNDGSCKSSSS-SKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLIC 787 (798)
Q Consensus 738 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (798)
-|++..+ ...++.||+.+.|+||+||+|++||++||+||+|..
T Consensus 547 -------~~s~~~~~~~s~~~~~~~~~~~~~~gq~~~~h~~~~~~~~~~~p 590 (625)
T KOG1091|consen 547 -------GCSPPKHASSSGDTDQGSATTLKNLGQSMLEHIEMIESVFEQEP 590 (625)
T ss_pred -------CCCCCCcccccCCcccccccccccCchhHHHHHHHHHHhhccCc
Confidence 1333222 223377999999999999999999999999999996
No 2
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.3e-56 Score=466.72 Aligned_cols=296 Identities=30% Similarity=0.561 Sum_probs=255.1
Q ss_pred CCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCC--CCCCCCccCCCCCCCCCCCccccCC
Q 003745 29 ANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDG--SNSPDLVMDNPLSQNPDSTWGRFFR 106 (798)
Q Consensus 29 ~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~--~~~~d~~idnPLs~n~dS~W~~~F~ 106 (798)
.++|+++|+++|||+|+..+. |...++++|..|..+..+.+..|...... ...-|..-+|||+.+|.+.|+.||+
T Consensus 40 ~~lR~~~WkllL~Yl~~er~~---w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhPls~~~~sdwn~ff~ 116 (370)
T KOG4567|consen 40 ASLRPLVWKLLLGYLPPERSK---WTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHPLSLGPTSDWNTFFK 116 (370)
T ss_pred cchhHhHHHHHHhhcChhhhh---hHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCCCCCCchhhHHHHhh
Confidence 699999999999999998764 67889999999999999999888632211 1123445589999999999999999
Q ss_pred ChHHHHhHHhhhcccCCCCccCCCCcc---------------------------HHHHHHHHHHHHHhhCCCCCccCCch
Q 003745 107 SAELEKMVDQDLSRLYPEHGSYFQTPG---------------------------CQGMLRRILLLWCLRHPEFGYRQGMH 159 (798)
Q Consensus 107 d~El~kqI~kDV~RT~pe~~~fFq~~~---------------------------~q~~L~RIL~~yal~nPeiGY~QGMn 159 (798)
+.|+..||++||.||+|+. .||+.+. ......|||++||+.||+||||||||
T Consensus 117 d~e~l~QIdrDvrr~~pdi-~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMN 195 (370)
T KOG4567|consen 117 DCEVLLQIDRDVRRTHPDI-SFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMN 195 (370)
T ss_pred hhHHHHHHHHHHHHhCcch-HhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhH
Confidence 9999999999999999998 8887421 12246899999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhhhhccccccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHH
Q 003745 160 ELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQT 239 (798)
Q Consensus 160 EIlApLL~V~~~D~~~lsev~~~yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~ 239 (798)
+|+||+||||..|++. +
T Consensus 196 EIlaPiYYVfa~Dpd~------------------------------------------------------------e--- 212 (370)
T KOG4567|consen 196 EILAPIYYVFANDPDE------------------------------------------------------------E--- 212 (370)
T ss_pred HHhhhhheeeccCCch------------------------------------------------------------h---
Confidence 9999999999876421 0
Q ss_pred HHhhccccccccchhhhcccchhhHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHH
Q 003745 240 IVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSS 319 (798)
Q Consensus 240 i~~lsd~ygaegelg~~Ls~k~~EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPe 319 (798)
...++|+|||+||..||..++ |+|....+ .|..| |...+.++..+|+.+|-+
T Consensus 213 ------------------~~~~aEaDaFFCF~~LMseir------Dnf~k~LD-dS~~G---I~~~Msr~~~~lk~~D~E 264 (370)
T KOG4567|consen 213 ------------------NRAYAEADAFFCFTQLMSEIR------DNFIKTLD-DSVGG---IHFLMSRLSELLKKHDEE 264 (370)
T ss_pred ------------------hHHhhhhhHHHHHHHHHHHHH------HHHHHhcc-ccccc---hHHHHHHHHHHHHHhhHH
Confidence 012579999999999999865 89987655 56655 455678999999999999
Q ss_pred HHHHHHHcCCCCcchhhHHHHHhhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHH
Q 003745 320 LHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMML 399 (798)
Q Consensus 320 L~~HL~~lgIePqlFalRWf~tLFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl 399 (798)
||.||++.+|.|++|+||||.+||++|||++|+++|||.+|++.. |++|+.++|+|||+
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~---------------------rfd~Ll~iCcsmli 323 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ---------------------RFDFLLYICCSMLI 323 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh---------------------hhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 34899999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHh
Q 003745 400 YIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALAL 442 (798)
Q Consensus 400 ~~R~~LL~~d~~te~Lq~L~n~P~~iDv~~LI~kA~~L~~~~~ 442 (798)
..|+.||+.++ +.||++||+||+ +|+.+++..|.+|++...
T Consensus 324 l~Re~il~~DF-~~nmkLLQ~yp~-tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 324 LVRERILEGDF-TVNMKLLQNYPT-TDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHHHHHHhcch-HHHHHHHhcCCC-CCHHHHHHHHHHHHhccc
Confidence 99999999985 999999999995 999999999999985544
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-42 Score=370.25 Aligned_cols=291 Identities=25% Similarity=0.434 Sum_probs=238.6
Q ss_pred cCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCcccc
Q 003745 25 SGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRF 104 (798)
Q Consensus 25 ~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~~ 104 (798)
.+.+...|+++||+++||+|.+.. .....++.+|++|..++.++....+...
T Consensus 187 ~Gvp~~~Rp~~Wkll~gylp~n~~---rr~~~l~~Kr~eY~~~v~~~~~~~~~~~------------------------- 238 (484)
T KOG1092|consen 187 NGVPSKMRPIVWKLLSGYLPPNSD---RREGTLQRKRKEYVDSVVQYFDSLTNGD------------------------- 238 (484)
T ss_pred CCCCccccCccceeeecccCcchh---hhhhhHHHHHHHHHHHHHHHhccCCCcc-------------------------
Confidence 456778999999999999998764 2345568899999999999986543210
Q ss_pred CCChHHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccc
Q 003745 105 FRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHE 184 (798)
Q Consensus 105 F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~ye 184 (798)
.+.+..+||.-|+.|+.|.. .+|+.+.+|++|.|||++||.+||..||+||.++++.|+|.++....
T Consensus 239 -~~~d~~rQI~id~prm~p~~-~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~----------- 305 (484)
T KOG1092|consen 239 -EDQDTWRQIPIDIPRMNPHI-PLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEY----------- 305 (484)
T ss_pred -ccCccccccccCCCCCCccc-cchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhh-----------
Confidence 11234579999999999987 89999999999999999999999999999999999999999986421
Q ss_pred cccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhH
Q 003745 185 DHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEH 264 (798)
Q Consensus 185 d~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~Ea 264 (798)
+... +.+..| |+ ..|+.|.. .-+|+
T Consensus 306 --l~~~-------~~~~~~--d~-----------------------~~l~~E~~---------------------~~iEA 330 (484)
T KOG1092|consen 306 --LGPI-------MDVESI--DM-----------------------SLLPAENA---------------------EDIEA 330 (484)
T ss_pred --cCcc-------cccccc--ch-----------------------hhccHHHH---------------------hhhhh
Confidence 1000 011111 11 11221111 12699
Q ss_pred HHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhC
Q 003745 265 DAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFG 344 (798)
Q Consensus 265 DAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFa 344 (798)
|||||+..|+.+++ |.|.. ..|||++++..|.+|++++|+.||+||.++||+...|||||+.|||.
T Consensus 331 DsyWClskLLD~IQ------DNYtf--------aQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLm 396 (484)
T KOG1092|consen 331 DAYWCLSKLLDGIQ------DNYTF--------AQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLM 396 (484)
T ss_pred hHHHHHHHHHHHhh------hhhhh--------cChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 99999999999987 56665 36889999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCC-
Q 003745 345 REFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV- 423 (798)
Q Consensus 345 REFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~- 423 (798)
||||+..++||||.|+++.. +|. .|++|||+|.|+..+++|++.| |.+.|.+|||+|+
T Consensus 397 RE~pl~~~iRlWDTY~aE~d-------------gf~-------~FhvYvcAAFL~kW~~eL~e~D-FQ~~ilfLQnlPT~ 455 (484)
T KOG1092|consen 397 REFPLRCTIRLWDTYLAEPD-------------GFN-------EFHVYVCAAFLLKWSSELMEND-FQELILFLQNLPTH 455 (484)
T ss_pred hhccchhHHHHHHHhhcCcc-------------chH-------HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhcCCCC
Confidence 99999999999999999865 332 7999999999999999999766 5899999999997
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhcCC
Q 003745 424 ---NINLKKIIGKTKSLQALALDANL 446 (798)
Q Consensus 424 ---~iDv~~LI~kA~~L~~~~~~~~~ 446 (798)
+.+++-|+..|+.++.++.+++.
T Consensus 456 ~W~d~eIellLseA~~~k~~f~da~~ 481 (484)
T KOG1092|consen 456 NWSDREIELLLSEAFRLKSVFSDAPN 481 (484)
T ss_pred CccHHHHHHHHHHHHHHHHHHccchh
Confidence 37899999999999999987764
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=4.4e-36 Score=296.87 Aligned_cols=194 Identities=35% Similarity=0.595 Sum_probs=166.1
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
|++.++.+|+.+|+++||+.+...+ ..+..|..++++....+
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~----------~~~~~Y~~l~~~~~~~~---------------------------- 43 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS----------ADKDLYSRLLKETAPKD---------------------------- 43 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc----------ccchHHHHHHHhhcCCC----------------------------
Confidence 6788999999999999999996532 13567888877643211
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCc--cHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRN 181 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~--~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~ 181 (798)
....++|++||.||+|++ .+|+.+ ..++.|+|||.+||.+||++||+||||+|||+||+++.+
T Consensus 44 ----~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~---------- 108 (199)
T smart00164 44 ----KSIVHQIEKDLRRTFPEH-SFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPD---------- 108 (199)
T ss_pred ----hhhHHHHhcccCCCCCCc-hhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCC----------
Confidence 124689999999999998 899864 489999999999999999999999999999999997621
Q ss_pred ccccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccch
Q 003745 182 EHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF 261 (798)
Q Consensus 182 ~yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~ 261 (798)
T Consensus 109 -------------------------------------------------------------------------------- 108 (199)
T smart00164 109 -------------------------------------------------------------------------------- 108 (199)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHH-cCCCCcchhhHHHH
Q 003745 262 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVE-LGVEPQYFGLRWLR 340 (798)
Q Consensus 262 ~EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~-lgIePqlFalRWf~ 340 (798)
|++|||||.++|..... .+|.+ +++++...+..+..+|+.++|+||.||.+ +|+++.+|+++|++
T Consensus 109 -e~~af~~~~~l~~~~~~-----~~~~~--------~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~ 174 (199)
T smart00164 109 -EEDAFWCLVKLMERYGP-----NFYLP--------DMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFL 174 (199)
T ss_pred -HHHHHHHHHHHHHHhCc-----ccCCC--------ChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHH
Confidence 78999999999997542 34543 46678888899999999999999999996 99999999999999
Q ss_pred HhhCcCCChHHHHHHHHHHhhcCC
Q 003745 341 VLFGREFSLGDLLIIWDEIFASDS 364 (798)
Q Consensus 341 tLFaREFpL~dlLrIWD~Ifa~g~ 364 (798)
+||+++||++.+++|||.||++|+
T Consensus 175 ~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 175 TLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHhhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999874
No 5
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=7.7e-32 Score=266.68 Aligned_cols=170 Identities=29% Similarity=0.584 Sum_probs=146.3
Q ss_pred HHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccccccc
Q 003745 109 ELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFT 188 (798)
Q Consensus 109 El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~ 188 (798)
+..++|.+||.||+++. ..++.+..+..|.|||.+|+..+|++||+|||++|+++|++++.+
T Consensus 45 ~~~~~I~~Dv~rt~~~~-~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~----------------- 106 (214)
T PF00566_consen 45 KIFEQIDKDVNRTFPNS-FLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLD----------------- 106 (214)
T ss_dssp TCHHHHHHHHCTSSTSC-CCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSH-----------------
T ss_pred hHHHHHHHhhhhhcccc-hhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhccc-----------------
Confidence 34689999999999965 788889999999999999999999999999999999999966421
Q ss_pred cccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHH
Q 003745 189 DKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYC 268 (798)
Q Consensus 189 d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~ 268 (798)
|++|||
T Consensus 107 --------------------------------------------------------------------------e~~af~ 112 (214)
T PF00566_consen 107 --------------------------------------------------------------------------EEEAFW 112 (214)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------ccchhc
Confidence 678999
Q ss_pred HHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCCC
Q 003745 269 MFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFS 348 (798)
Q Consensus 269 mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREFp 348 (798)
||.++|. ..+.++|.. +.+++...+..+..+|+.++|+||+||.+.|+++.+|+++|+.++|++++|
T Consensus 113 ~~~~l~~-----~~~~~~~~~--------~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~ 179 (214)
T PF00566_consen 113 CFVQLLN-----YYLPDFFQP--------NFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLP 179 (214)
T ss_dssp HHHHHHT-----HHGGGGTST--------THHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-
T ss_pred cccchhc-----ccccccccc--------cccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCC
Confidence 9999993 234577765 345677888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHh
Q 003745 349 LGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLL 406 (798)
Q Consensus 349 L~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL 406 (798)
++.+++||| ++.+|.. .+++++|+|||...|++||
T Consensus 180 ~~~~~~lwD-~l~~g~~----------------------~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 180 FDDVLRLWD-FLLEGYK----------------------FFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHHHHHHHH-HHHHCTT----------------------HHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHH-HHHcCCC----------------------cHHHHHHHHHHHHHHHHhC
Confidence 999999999 6666652 2488999999999999987
No 6
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=304.39 Aligned_cols=229 Identities=26% Similarity=0.398 Sum_probs=190.9
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
|+|.|+.+|+.+|..+.|-... .+.+..|..+.+.-..
T Consensus 154 RkGiP~~~R~~VW~~~~g~~~~------------~~~~~~yq~ll~~~~~------------------------------ 191 (436)
T KOG2058|consen 154 RKGIPPELRGEVWWVLSGARRQ------------LNYPGYYQELLRKGDE------------------------------ 191 (436)
T ss_pred HcCCChhhhhHHHHHHhcchhh------------ccCchhHHHHHhcCCC------------------------------
Confidence 7899999999999999982111 0114456666433110
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCcc--HHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTPG--CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRN 181 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~~--~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~ 181 (798)
+.....++|+.|+.||||.+..+|..++ ++..|+|||++||.+||.||||||||.|||+||+++..
T Consensus 192 --~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~---------- 259 (436)
T KOG2058|consen 192 --KKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPS---------- 259 (436)
T ss_pred --ccchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCC----------
Confidence 1114679999999999999866787655 58999999999999999999999999999999999721
Q ss_pred ccccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccch
Q 003745 182 EHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF 261 (798)
Q Consensus 182 ~yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~ 261 (798)
T Consensus 260 -------------------------------------------------------------------------------- 259 (436)
T KOG2058|consen 260 -------------------------------------------------------------------------------- 259 (436)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHH
Q 003745 262 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRV 341 (798)
Q Consensus 262 ~EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~t 341 (798)
|.+|||||..+...+- ..||.+. |.+.+....+|..||+..+|+|+.||..+|+.-.+|++.||++
T Consensus 260 -EE~AFW~Lv~iie~~l-----p~Yyt~n--------L~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt 325 (436)
T KOG2058|consen 260 -EEDAFWMLVALIENYL-----PRYYTPN--------LIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLT 325 (436)
T ss_pred -hHHHHHHHHHHHHHhc-----hhhcCch--------hhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHH
Confidence 7899999999999864 3577653 4455556679999999999999999999999999999999999
Q ss_pred hhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCC
Q 003745 342 LFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNF 421 (798)
Q Consensus 342 LFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~ 421 (798)
+|....|.+.+|+|||++|++|. .+++.+|+|++...+++||......++++.|..+
T Consensus 326 ~f~d~lP~~t~LrIwD~~f~eGs-----------------------kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~ 382 (436)
T KOG2058|consen 326 LFVDILPSETVLRIWDCLFYEGS-----------------------KVLFRVALAILKKHEEEILKEDSSKEILRVLPDL 382 (436)
T ss_pred HhcccccHHHHHHHHHHHHhccc-----------------------HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999999999999986 4788899999999999999999888888888766
Q ss_pred CC
Q 003745 422 PV 423 (798)
Q Consensus 422 P~ 423 (798)
..
T Consensus 383 ~~ 384 (436)
T KOG2058|consen 383 TK 384 (436)
T ss_pred HH
Confidence 53
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=293.98 Aligned_cols=230 Identities=31% Similarity=0.462 Sum_probs=187.6
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
|.+.+..+|+.+|..++|+++..... -..|..+.+.......
T Consensus 210 ~~gip~~~r~~vw~~~~~~~~~~~~~-----------~~~y~~~~~~~~~~~~--------------------------- 251 (496)
T COG5210 210 RKGIPNELRGDVWEFLLGIGFDLDKN-----------PGLYERLLNLHREAKI--------------------------- 251 (496)
T ss_pred HhcCChHhhhhhHHHHhccchhhccC-----------chHHHHHHHHHHhcCC---------------------------
Confidence 45678999999999999999875432 2234444443321110
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCccHHHH--HHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGM--LRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRN 181 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~--L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~ 181 (798)
...+...+|++||.||+|.+ ..|+....+.. |+|||.+|+.+||++||||||++|+||||++|..
T Consensus 252 --~~~~~~~~i~~Dl~rt~~~~-~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~---------- 318 (496)
T COG5210 252 --PTQEIISQIEKDLSRTFPDN-SLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLES---------- 318 (496)
T ss_pred --CcHHHHHHHHcccccccccc-ccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhh----------
Confidence 00145789999999999999 88888776656 9999999999999999999999999999999831
Q ss_pred ccccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccch
Q 003745 182 EHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF 261 (798)
Q Consensus 182 ~yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~ 261 (798)
T Consensus 319 -------------------------------------------------------------------------------- 318 (496)
T COG5210 319 -------------------------------------------------------------------------------- 318 (496)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHH
Q 003745 262 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRV 341 (798)
Q Consensus 262 ~EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~t 341 (798)
|++|||||..||... .+.++|.. +++|+...+..+..+++.++|+||.||...|+....|+++||++
T Consensus 319 -Ee~AF~~l~~L~~~~----~l~~~~~~--------~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~ 385 (496)
T COG5210 319 -EEQAFWCLVKLLKNY----GLPGYFLK--------NLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLT 385 (496)
T ss_pred -hHHHHHHHHHHHHhc----cchhhccc--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHH
Confidence 789999999999953 25577775 46778888889999999999999999999999999999999999
Q ss_pred hhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHC
Q 003745 342 LFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLN 420 (798)
Q Consensus 342 LFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n 420 (798)
+|.++||++.++||||.+|++|. .+++.+++|++...+..++..+........+..
T Consensus 386 lF~~~~p~e~~lriwD~lf~eg~-----------------------~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 441 (496)
T COG5210 386 LFVREFPLEYALRIWDCLFLEGS-----------------------SMLFQLALAILKLLRDKLLKLDSDELLDLLLKQ 441 (496)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcc-----------------------HHHHHHHHHHHHhhhhhhhccCchhHHHHHHHh
Confidence 99999999999999999999886 467888999999999999988763343444433
No 8
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=1e-29 Score=274.70 Aligned_cols=290 Identities=24% Similarity=0.404 Sum_probs=220.4
Q ss_pred CCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHc--cCCCCCCCCCCCCCCccCCCCCCCCCCCccccCC
Q 003745 29 ANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLL--VDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFR 106 (798)
Q Consensus 29 ~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~l--i~P~~~kd~~~~~d~~idnPLs~n~dS~W~~~F~ 106 (798)
..+|+.+|++||.+|...++ .++.......+|++|.++.++-+ +.|.... --|.
T Consensus 438 ~sir~evwpfllk~ys~est-~edr~al~~~krkey~eiqqkrlysmspeeh~-------------------~fwk---- 493 (781)
T KOG2224|consen 438 KSIRGEVWPFLLKCYSFEST-FEDRAALMDIKRKEYEEIQQKRLYSMSPEEHI-------------------AFWK---- 493 (781)
T ss_pred hhhhcchhHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH-------------------HHHh----
Confidence 57999999999999998764 57755555789999999877654 3331100 0232
Q ss_pred ChHHHHhHHhhhcccCCCCccCCCCcc--HHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccc
Q 003745 107 SAELEKMVDQDLSRLYPEHGSYFQTPG--CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHE 184 (798)
Q Consensus 107 d~El~kqI~kDV~RT~pe~~~fFq~~~--~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~ye 184 (798)
+ +.-.++|||.||..++ +||...+ +.+.|+|||+.||.+||.+||-|||.+++||+|--.+++.+.
T Consensus 494 n--vq~tvdkdvvrtdrnn-~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqneset--------- 561 (781)
T KOG2224|consen 494 N--VQFTVDKDVVRTDRNN-PFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESET--------- 561 (781)
T ss_pred h--eEEEEecceeeccCCC-CcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccch---------
Confidence 1 2236799999999999 9998654 678999999999999999999999999999998776553221
Q ss_pred cccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhH
Q 003745 185 DHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEH 264 (798)
Q Consensus 185 d~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~Ea 264 (798)
=|||.-++..|.|-. ...+..+|+ |.
T Consensus 562 -------------------fwcfvglmqgmsdlv-------------------------------apilaevld----es 587 (781)
T KOG2224|consen 562 -------------------FWCFVGLMQGMSDLV-------------------------------APILAEVLD----ES 587 (781)
T ss_pred -------------------hhhhhhhhccchhhh-------------------------------hhHHHhhhc----cc
Confidence 156666665554311 112344454 99
Q ss_pred HHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCC--cchhhHHHHHh
Q 003745 265 DAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEP--QYFGLRWLRVL 342 (798)
Q Consensus 265 DAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIeP--qlFalRWf~tL 342 (798)
|+||||+.||.. .||.-++.+. .+-..+..+.+|++...|..|+||+++|-+. .+||.||+++.
T Consensus 588 dtfwcfvglmqn--------a~fv~sp~d~------dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllc 653 (781)
T KOG2224|consen 588 DTFWCFVGLMQN--------AFFVCSPRDE------DMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLC 653 (781)
T ss_pred cchhhhhhhhcc--------eEEEeCCcch------hhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 999999999986 5777665431 3445667889999999999999999988543 58999999999
Q ss_pred hCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHCC
Q 003745 343 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENAT-TCLQRLLNF 421 (798)
Q Consensus 343 FaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~t-e~Lq~L~n~ 421 (798)
|.||||-..++|||.+.|++.-.. -|++|+|+||+....+..++..-.+ ++|-.+-++
T Consensus 654 fkref~ea~airiweacwa~y~td---------------------yfhlficlaiiaiy~ddvi~q~l~~demllhf~nl 712 (781)
T KOG2224|consen 654 FKREFPEAEAIRIWEACWAHYLTD---------------------YFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNL 712 (781)
T ss_pred hhhcccHHHHHHHHHHHHHHhhHH---------------------HHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhh
Confidence 999999999999999999975421 4889999999999999998865433 444444455
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 003745 422 PVNINLKKIIGKTKSLQALALD 443 (798)
Q Consensus 422 P~~iDv~~LI~kA~~L~~~~~~ 443 (798)
...+|-+-++.+|+.|.+.+..
T Consensus 713 am~mdgelilrkar~ll~qfr~ 734 (781)
T KOG2224|consen 713 AMHMDGELILRKARGLLHQFRL 734 (781)
T ss_pred hhhcCchhhHHHHHHHHHHHhh
Confidence 5568999999999998776654
No 9
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=265.57 Aligned_cols=201 Identities=24% Similarity=0.505 Sum_probs=180.7
Q ss_pred HHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccccccccc
Q 003745 111 EKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDK 190 (798)
Q Consensus 111 ~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~d~ 190 (798)
.+||+.||+|+++.. .+..++.+++.|+|+|.+|+..+|.+.|.||..-++|||+|.+.++
T Consensus 391 drqievdiprchQyd-~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nn------------------ 451 (725)
T KOG1093|consen 391 DRQIEVDIPRCHQYD-ELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNN------------------ 451 (725)
T ss_pred hhhhhcccchhhhcc-cccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCc------------------
Confidence 389999999999887 8899999999999999999999999999999999999999997531
Q ss_pred cCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHHHH
Q 003745 191 FDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMF 270 (798)
Q Consensus 191 fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~mF 270 (798)
|+-||-|+
T Consensus 452 ------------------------------------------------------------------------e~laF~~~ 459 (725)
T KOG1093|consen 452 ------------------------------------------------------------------------ELLAFACI 459 (725)
T ss_pred ------------------------------------------------------------------------hHHHHHHH
Confidence 77899999
Q ss_pred HHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCCChH
Q 003745 271 DALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLG 350 (798)
Q Consensus 271 ~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREFpL~ 350 (798)
..++-+.. ..||..+ ++ ..+++.+..|++++..+||+|++||..+|+.|++||+.||+|+|+++||++
T Consensus 460 ~~fi~kyc-----q~fflkd---ns----~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~ 527 (725)
T KOG1093|consen 460 ATFIPKYC-----QHFFLKD---NS----NVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLH 527 (725)
T ss_pred HHHHHHHH-----HHHHhhc---Cc----hhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHH
Confidence 99998753 3677653 22 257889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCCCCCHHHH
Q 003745 351 DLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKI 430 (798)
Q Consensus 351 dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~~iDv~~L 430 (798)
.++.+||.+|..++ .|.++++|||+.+.|+.||++.+ .+|+.++.+.| ++|++.+
T Consensus 528 kil~LwD~lml~~~-----------------------SFplmi~vAil~~lR~~LLa~nf-ne~illf~d~p-dldId~~ 582 (725)
T KOG1093|consen 528 KILHLWDNLMLGHS-----------------------SFPLMIGVAILIQLRDPLLACNF-NECILLFSDLP-DLDIDVC 582 (725)
T ss_pred HHHHHHHHHhcCCC-----------------------ccHHHHHHHHHHHhhhhhhhCCc-hhheeeeccCC-cccHHHH
Confidence 99999999999876 36789999999999999999985 89999999999 8999999
Q ss_pred HHHHHHHHH
Q 003745 431 IGKTKSLQA 439 (798)
Q Consensus 431 I~kA~~L~~ 439 (798)
|.....|+.
T Consensus 583 Ires~~l~e 591 (725)
T KOG1093|consen 583 IRESYHLME 591 (725)
T ss_pred HHHHhhhhh
Confidence 998777743
No 10
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=3.2e-26 Score=248.58 Aligned_cols=193 Identities=22% Similarity=0.376 Sum_probs=171.8
Q ss_pred HHhHHhhhcccCCCCccCCCCcc-HHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcccccccccc
Q 003745 111 EKMVDQDLSRLYPEHGSYFQTPG-CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 189 (798)
Q Consensus 111 ~kqI~kDV~RT~pe~~~fFq~~~-~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~d 189 (798)
..+|+.|+.||||.. ..||..+ ..++|..||.+|+.+.|++||+|||.+|+|+||+.|.
T Consensus 356 v~~i~LDisrTfpsl-~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd------------------- 415 (586)
T KOG2223|consen 356 VELIKLDISRTFPSL-SIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD------------------- 415 (586)
T ss_pred hhheeechhccCcce-eeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC-------------------
Confidence 478999999999998 7888755 8899999999999999999999999999999988751
Q ss_pred ccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHHH
Q 003745 190 KFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCM 269 (798)
Q Consensus 190 ~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~m 269 (798)
+++||.+
T Consensus 416 -------------------------------------------------------------------------~~~AFia 422 (586)
T KOG2223|consen 416 -------------------------------------------------------------------------LADAFIA 422 (586)
T ss_pred -------------------------------------------------------------------------cHHHHHH
Confidence 5889999
Q ss_pred HHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCCCh
Q 003745 270 FDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSL 349 (798)
Q Consensus 270 F~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREFpL 349 (798)
|.+|++... ...||.-. -+.+......|...|+.-.|+|+.||.++.+.|.+|.+.|+.+||+..+|+
T Consensus 423 fANLLdkp~----q~Aff~~d--------~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpl 490 (586)
T KOG2223|consen 423 FANLLDKPC----QQAFFRVD--------HSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPL 490 (586)
T ss_pred HHHHhccHH----HHHHHhcC--------cHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCCh
Confidence 999999753 22566542 234677788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCCCCCHHH
Q 003745 350 GDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKK 429 (798)
Q Consensus 350 ~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~~iDv~~ 429 (798)
+...||||+|+-+|. .|++..+++||..+++.||.+|+ ..|+++|.++|.++-.+.
T Consensus 491 dlacRIwDvy~rdge-----------------------eFlfr~~lgIlklyepkLl~mDf-~~~~qfLtklp~dL~~ee 546 (586)
T KOG2223|consen 491 DLACRIWDVYCRDGE-----------------------EFLFRTALGILKLYEPKLLVMDF-IHVAQFLTKLPEDLTPEE 546 (586)
T ss_pred HHhhhhhheeeecch-----------------------HHHHHHHHHHHHHccchHhhhhH-HHHHHHHHhCcccCCHHH
Confidence 999999999998876 68999999999999999999885 899999999999888877
Q ss_pred HHH
Q 003745 430 IIG 432 (798)
Q Consensus 430 LI~ 432 (798)
+..
T Consensus 547 lF~ 549 (586)
T KOG2223|consen 547 LFM 549 (586)
T ss_pred HHH
Confidence 754
No 11
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=2.8e-25 Score=242.54 Aligned_cols=283 Identities=23% Similarity=0.366 Sum_probs=215.5
Q ss_pred CCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccccC
Q 003745 26 GPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFF 105 (798)
Q Consensus 26 ~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~~F 105 (798)
+++-.+|+..|+.|-|.+..... ..-.|.+..+.+-.+.
T Consensus 170 giphslr~~lw~rlsga~~kkk~-----------ae~sy~~ilk~~andk------------------------------ 208 (848)
T KOG2222|consen 170 GIPHSLRAFLWMRLSGALAKKKD-----------AETSYEDILKACANDK------------------------------ 208 (848)
T ss_pred CCCcchhHHHHHHhhhhhhhhcc-----------ccccHHHHHHHhcccc------------------------------
Confidence 47889999999999998764321 1234777776655321
Q ss_pred CChHHHHhHHhhhcccCCCCccCCCCc--cHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcccc
Q 003745 106 RSAELEKMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEH 183 (798)
Q Consensus 106 ~d~El~kqI~kDV~RT~pe~~~fFq~~--~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~y 183 (798)
..+-+||++|+-|+.|.+ ..|..+ .+...|+|||.+.|..+|++||||||.-|+|.||+.+.
T Consensus 209 --~~~~~qiekdllr~lpnn-~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~------------- 272 (848)
T KOG2222|consen 209 --LMIGKQIEKDLLRILPNN-ACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE------------- 272 (848)
T ss_pred --cchhHHHHHHHHHhCCCc-ceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-------------
Confidence 123589999999999999 666644 47899999999999999999999999999999988762
Q ss_pred ccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhh
Q 003745 184 EDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFME 263 (798)
Q Consensus 184 ed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~E 263 (798)
|
T Consensus 273 -------------------------------------------------------------------------------e 273 (848)
T KOG2222|consen 273 -------------------------------------------------------------------------------E 273 (848)
T ss_pred -------------------------------------------------------------------------------c
Confidence 6
Q ss_pred HHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhh
Q 003745 264 HDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLF 343 (798)
Q Consensus 264 aDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLF 343 (798)
+.||||+.++++.+.+ ..||+.. +-|++..-.++.+|++-+.|.|-..|..+.|+..+..+.||++||
T Consensus 274 e~afwmmaaiiedilp----~nfysqt--------llgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf 341 (848)
T KOG2222|consen 274 ENAFWMMAAIIEDILP----ANFYSQT--------LLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLF 341 (848)
T ss_pred hhHHHHHHHHHHHhcC----chhhhhh--------HhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHH
Confidence 7799999999998764 4778652 445666666888999999999999999999999999999999999
Q ss_pred CcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHH
Q 003745 344 GREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLAT----ENATTCLQRLL 419 (798)
Q Consensus 344 aREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~----d~~te~Lq~L~ 419 (798)
+..|....++||||.||.+|. ..|+.+.++||.....+|-.. ++..+++..|.
T Consensus 342 ~nv~~~killriwd~~fy~g~-----------------------i~ifql~i~ilkmkeqdi~~iaettensa~if~als 398 (848)
T KOG2222|consen 342 ANVFHMKILLRIWDFFFYEGG-----------------------INIFQLIIGILKMKEQDIKEIAETTENSADIFNALS 398 (848)
T ss_pred HHHHHHHHHHHHHHhheecCc-----------------------chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHH
Confidence 999999999999999999875 356788899999998888653 56678999999
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCceecccCCCCCCCCCCCCCCCC
Q 003745 420 NFPV-NINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVV 484 (798)
Q Consensus 420 n~P~-~iDv~~LI~kA~~L~~~~~~~~~s~~~~~~~~~~~~s~~~~~r~~~~~~~~~~p~~p~~~~ 484 (798)
.+|. ..|++++++.|...--...+ -.++....-.+...+...++.+....+.|..|+..+
T Consensus 399 ~ip~~vtdve~l~~~~~~~~~sis~-----~li~~~rkkh~a~lmadqg~~i~n~~a~~nlpkqq~ 459 (848)
T KOG2222|consen 399 DIPAEVTDVEKLFEQAGEFEFSISD-----HLIAEHRKKHLAVLMADQGHIIGNPAAAPNLPKQQL 459 (848)
T ss_pred hCCchhhhHHHHHHHHhhcccchhH-----HHHHHHHHHhHHhhhhcCCcccCCcccCCCCcHHHH
Confidence 9995 58999999988654211100 000001111112333455666655667777777533
No 12
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.90 E-value=6.2e-24 Score=240.16 Aligned_cols=266 Identities=20% Similarity=0.299 Sum_probs=209.1
Q ss_pred CCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccccCCCh
Q 003745 29 ANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFRSA 108 (798)
Q Consensus 29 ~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~~F~d~ 108 (798)
..+|+.+|+.++++++.+.+.-+ +..+......|...+..|...-+... +.+ +.-.
T Consensus 180 ~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~qW~~~~~~~~------------~~~----------~~~~ 235 (488)
T KOG2197|consen 180 KSLRAEVWKFLLDYSPWDSTTRE--RVSLRKLTDEYFRLKLQWSSTSPEQS------------PES----------EGYL 235 (488)
T ss_pred cchhhhhhhhhhcccCccccccc--ccccccccccHhhhhhhheecccccc------------ccc----------cchh
Confidence 38999999999999999876511 11122226678888888874321110 000 0112
Q ss_pred HHHHhHHhhhcccCCCCccCCCCccH--HHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccccc
Q 003745 109 ELEKMVDQDLSRLYPEHGSYFQTPGC--QGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDH 186 (798)
Q Consensus 109 El~kqI~kDV~RT~pe~~~fFq~~~~--q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~ 186 (798)
+-...|.+||.||.+.+ .||+.... ...|..||.+|+.+++++||||||+++++|+++++..
T Consensus 236 ~~~~~i~~dv~rtDr~~-~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~d--------------- 299 (488)
T KOG2197|consen 236 ERKSRIEKDVGRTDRSL-EFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMED--------------- 299 (488)
T ss_pred hhhhhhhhhccccchhh-hhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecC---------------
Confidence 33478999999999998 88887777 8999999999999999999999999999999988631
Q ss_pred cccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHH
Q 003745 187 FTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDA 266 (798)
Q Consensus 187 f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDA 266 (798)
|++|
T Consensus 300 ----------------------------------------------------------------------------e~~a 303 (488)
T KOG2197|consen 300 ----------------------------------------------------------------------------EVEA 303 (488)
T ss_pred ----------------------------------------------------------------------------chHH
Confidence 7899
Q ss_pred HHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcC
Q 003745 267 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGRE 346 (798)
Q Consensus 267 F~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaRE 346 (798)
||||+.+|....++ |..+ ..++..++..+..+++..||.||+||+.++..-.+|++||+.+.|.||
T Consensus 304 FwcFv~fm~~~~~n------F~~d--------~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrE 369 (488)
T KOG2197|consen 304 FWCFVGFMDRLRHN------FRID--------QSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRRE 369 (488)
T ss_pred HHHHHHHHHHHhhc------Cccc--------cccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccc
Confidence 99999999986533 2221 124667778888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHCCCCCC
Q 003745 347 FSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATEN-ATTCLQRLLNFPVNI 425 (798)
Q Consensus 347 FpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~-~te~Lq~L~n~P~~i 425 (798)
|.+.++++||..+++..... .|++|++.|||......|+.... +.+.+..+-....+.
T Consensus 370 f~~ed~l~LWEvlw~~~~~~---------------------~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~ 428 (488)
T KOG2197|consen 370 FEFEDSLRLWEVLWTDLPSP---------------------HFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKA 428 (488)
T ss_pred cccccHHHHHHHHHhcCccc---------------------hHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccc
Confidence 99999999999999975421 58899999999998888887643 456666677777789
Q ss_pred CHHHHHHHHHHHHHHHhhcC
Q 003745 426 NLKKIIGKTKSLQALALDAN 445 (798)
Q Consensus 426 Dv~~LI~kA~~L~~~~~~~~ 445 (798)
|...++..|..+........
T Consensus 429 d~~~~~~~A~~~~~~~k~~~ 448 (488)
T KOG2197|consen 429 DVLWVLVRAEALERQNKQME 448 (488)
T ss_pred hhhhHHHHHHHHHHHHHhcc
Confidence 99999998888876555433
No 13
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.83 E-value=2.5e-20 Score=198.98 Aligned_cols=202 Identities=20% Similarity=0.271 Sum_probs=159.3
Q ss_pred HhHHhhhcccCCCCc---cCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccccccc
Q 003745 112 KMVDQDLSRLYPEHG---SYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFT 188 (798)
Q Consensus 112 kqI~kDV~RT~pe~~---~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~ 188 (798)
.|+..|+.|++.... ++-+....|..|..++...-.+||.+.|.||.|||+..||+|+..- +++
T Consensus 98 nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~-~Al------------ 164 (395)
T KOG2595|consen 98 NQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGEL-EAL------------ 164 (395)
T ss_pred ceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhhH-hhh------------
Confidence 578899999864321 3333345788888888888899999999999999999999998420 000
Q ss_pred cccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHH
Q 003745 189 DKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYC 268 (798)
Q Consensus 189 d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~ 268 (798)
-.+|+-++.
T Consensus 165 -----------------------------------------------------------------------~l~E~L~~~ 173 (395)
T KOG2595|consen 165 -----------------------------------------------------------------------SLMEELSTL 173 (395)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 014555555
Q ss_pred HHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCC-
Q 003745 269 MFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREF- 347 (798)
Q Consensus 269 mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREF- 347 (798)
-|..+|... |....+++..+..+++..||+||+.|..-.+.+ +||+.|++|+|++.+
T Consensus 174 ~lrdfM~~T---------------------ld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~ 231 (395)
T KOG2595|consen 174 HLRDFMLPT---------------------LDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLK 231 (395)
T ss_pred HHHHHHHHH---------------------HHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcch
Confidence 555555431 445678889999999999999999999988886 899999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHCCCCCCC
Q 003745 348 SLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQ-RLLNFPVNIN 426 (798)
Q Consensus 348 pL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq-~L~n~P~~iD 426 (798)
++..++|++|++++..+ -+.+|++++++++.|++|++++-....+. .|+.+|.++.
T Consensus 232 ~~~~vvRlfD~Flas~p-----------------------l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp 288 (395)
T KOG2595|consen 232 DIRIVVRLFDFFLASHP-----------------------LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLP 288 (395)
T ss_pred hHHHHHHHHHHHHhcCc-----------------------chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccC
Confidence 89999999999999765 25689999999999999999865444444 4568999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 003745 427 LKKIIGKTKSLQALAL 442 (798)
Q Consensus 427 v~~LI~kA~~L~~~~~ 442 (798)
++.+|+.+..+...+.
T Consensus 289 ~d~lik~s~~~i~~~~ 304 (395)
T KOG2595|consen 289 YDTLIKESVLLITRKP 304 (395)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999877755444
No 14
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.81 E-value=5.1e-20 Score=208.79 Aligned_cols=182 Identities=24% Similarity=0.376 Sum_probs=160.8
Q ss_pred HHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccccccccc
Q 003745 111 EKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDK 190 (798)
Q Consensus 111 ~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~d~ 190 (798)
.+.|++|+.|.-|+| +-||.+.....|+|||.+||.+||+|||||-||-+++.+|.++.
T Consensus 244 ~eEIE~Dl~rsLpEh-pA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~-------------------- 302 (671)
T KOG4347|consen 244 TEEIEPDLGRSLPEH-PAFQSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCK-------------------- 302 (671)
T ss_pred cccccCCCCCCCCcc-hhhhCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhc--------------------
Confidence 368999999999999 89999999999999999999999999999999999998887641
Q ss_pred cCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHHHH
Q 003745 191 FDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMF 270 (798)
Q Consensus 191 fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~mF 270 (798)
|..|||++
T Consensus 303 ------------------------------------------------------------------------EEeafwll 310 (671)
T KOG4347|consen 303 ------------------------------------------------------------------------EEEAFWLL 310 (671)
T ss_pred ------------------------------------------------------------------------cchHHHHH
Confidence 67799999
Q ss_pred HHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCCChH
Q 003745 271 DALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLG 350 (798)
Q Consensus 271 ~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREFpL~ 350 (798)
+.+.+.. +.+||+.. +-|..-...+++.|++...|.||.|+..+| .-.+..+.||++||...+|++
T Consensus 311 ~~lce~~-----ip~yys~~--------vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le 376 (671)
T KOG4347|consen 311 SKLCEIY-----IPDYYSKT--------VVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLE 376 (671)
T ss_pred HHHHHHh-----cccccchh--------hhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchH
Confidence 9999875 34777763 234445557899999999999999999999 667899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCC
Q 003745 351 DLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 422 (798)
Q Consensus 351 dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P 422 (798)
..++|-|+||.+|. .+|+-||+||+..+.+.||.+.+..+.|..|.||-
T Consensus 377 ~a~~ilD~FF~eG~-----------------------rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~ 425 (671)
T KOG4347|consen 377 YAVRILDCFFYEGP-----------------------RVLFQIALAILKQNAERILSATDDGEAMMVLGNYF 425 (671)
T ss_pred HHHHHHhhhhhccc-----------------------HHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHH
Confidence 99999999999987 47889999999999999999887788898888754
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.81 E-value=2.2e-19 Score=206.38 Aligned_cols=185 Identities=25% Similarity=0.374 Sum_probs=161.0
Q ss_pred HhHHhhhcccCCCCccCCCCc--cHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcccccccccc
Q 003745 112 KMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 189 (798)
Q Consensus 112 kqI~kDV~RT~pe~~~fFq~~--~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~d 189 (798)
..|..|+-||||.| +||+.+ .+|..|.++|.+|++.+|++|||||..+++++||+.|.
T Consensus 623 hAi~idlgrtfp~h-~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~------------------- 682 (948)
T KOG4436|consen 623 HAILIDLGRTFPTH-PYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS------------------- 682 (948)
T ss_pred HHHHHhhccccCCC-HHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-------------------
Confidence 35678999999999 999875 47999999999999999999999999999999998762
Q ss_pred ccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHHH
Q 003745 190 KFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCM 269 (798)
Q Consensus 190 ~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~m 269 (798)
|+.||-|
T Consensus 683 -------------------------------------------------------------------------e~~afel 689 (948)
T KOG4436|consen 683 -------------------------------------------------------------------------EENAFEL 689 (948)
T ss_pred -------------------------------------------------------------------------hhhHHHH
Confidence 5667777
Q ss_pred HHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCCCh
Q 003745 270 FDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSL 349 (798)
Q Consensus 270 F~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREFpL 349 (798)
+..||...+ |+.-|.+ .+..++.++..+..+++.+.+.||+||.++.|.|.+||..||+++|+--||+
T Consensus 690 lk~LM~~r~----~r~qy~p--------dm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~l 757 (948)
T KOG4436|consen 690 LKFLMFDRG----MRKQYRP--------DMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPL 757 (948)
T ss_pred HHHHHHHHh----hHhhhch--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcc
Confidence 777776543 4444544 2455666778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCCC
Q 003745 350 GDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN 424 (798)
Q Consensus 350 ~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~~ 424 (798)
.-+.||+|.+|..|. ++|+.+++++|--.+..|++.|++++++.+|++.-+.
T Consensus 758 Gfvarvfd~~flq~t-----------------------evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~ 809 (948)
T KOG4436|consen 758 GFVARVFDLIFLQGT-----------------------EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPK 809 (948)
T ss_pred hHHHHHHHHHHhhcc-----------------------chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhh
Confidence 999999999999875 5788999999999999999999999999999985543
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.79 E-value=3.6e-19 Score=197.47 Aligned_cols=181 Identities=27% Similarity=0.444 Sum_probs=159.2
Q ss_pred HhHHhhhcccCCCCccCCCC--ccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcccccccccc
Q 003745 112 KMVDQDLSRLYPEHGSYFQT--PGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 189 (798)
Q Consensus 112 kqI~kDV~RT~pe~~~fFq~--~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~d 189 (798)
++| +|+.||+|.+ .+|+. ...|+.|.+||.+|++++|++||||||..++++++.++.
T Consensus 187 ~~~-~d~~Rt~~~~-~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~------------------- 245 (397)
T KOG1102|consen 187 EII-RDLSRTFPAH-LLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP------------------- 245 (397)
T ss_pred HHH-hhccCcCcch-hhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-------------------
Confidence 466 9999999998 66765 346889999999999999999999999999999988752
Q ss_pred ccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHHH
Q 003745 190 KFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCM 269 (798)
Q Consensus 190 ~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~m 269 (798)
|++||++
T Consensus 246 -------------------------------------------------------------------------ee~af~~ 252 (397)
T KOG1102|consen 246 -------------------------------------------------------------------------EEEAFPL 252 (397)
T ss_pred -------------------------------------------------------------------------hhhhhhh
Confidence 7889999
Q ss_pred HHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCCCh
Q 003745 270 FDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSL 349 (798)
Q Consensus 270 F~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREFpL 349 (798)
+..+|...+ .++|.. |++++...+..+.++++.+-|.++.|+...++++.+|+.+|++++|+..||+
T Consensus 253 lv~l~~~~~-----~~~~~~--------~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~ 319 (397)
T KOG1102|consen 253 LVKLMKNYG-----LDLLSP--------GFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPL 319 (397)
T ss_pred hhhhhhccc-----hhcccc--------cCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccH
Confidence 999999754 355533 4566777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCC
Q 003745 350 GDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 423 (798)
Q Consensus 350 ~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~ 423 (798)
+.+++|||++|..+. .+++.++++++.+..+.++..+ ++..++.|.+.+.
T Consensus 320 ~~~~ri~d~~~~~g~-----------------------~i~~~~~~~l~~~~~~~~~~~~-~e~~~~~l~~~~~ 369 (397)
T KOG1102|consen 320 ELVLRIWDALFVEGV-----------------------SILFRFSLALLKHKADDLLDLD-FESLLSYLRVDLP 369 (397)
T ss_pred HHHHHHhHHHHHhch-----------------------HHHHHHHHHHhhhhhHHHhhcc-HHHHHHHHhcccH
Confidence 999999999999873 5788999999999999999988 5899999987553
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=5.6e-14 Score=143.62 Aligned_cols=123 Identities=24% Similarity=0.375 Sum_probs=108.1
Q ss_pred HHhHHhhhcccCCCCccCCCCc--cHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccccccc
Q 003745 111 EKMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFT 188 (798)
Q Consensus 111 ~kqI~kDV~RT~pe~~~fFq~~--~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~f~ 188 (798)
.+.|.+|+.|-||.| ..|-.. ..+..|.|+|.+|.+++|+.||||+=.-|+|++|+.+.
T Consensus 143 ~e~i~kdl~rqfp~h-emf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp------------------ 203 (267)
T KOG2221|consen 143 AEGIHKDLHRQFPFH-EMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP------------------ 203 (267)
T ss_pred hhhhccccccCCCcc-cccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc------------------
Confidence 478999999999999 777653 37889999999999999999999999999999987652
Q ss_pred cccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHHHH
Q 003745 189 DKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYC 268 (798)
Q Consensus 189 d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDAF~ 268 (798)
+.||||
T Consensus 204 --------------------------------------------------------------------------~rdaf~ 209 (267)
T KOG2221|consen 204 --------------------------------------------------------------------------ARDAFW 209 (267)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 678999
Q ss_pred HHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHH
Q 003745 269 MFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWL 339 (798)
Q Consensus 269 mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf 339 (798)
||+.+.... +.+||+. ||..|+..-.+|..||+..+|..|.||...+|+|.+|...||
T Consensus 210 ~~vqiceky-----lqgy~~s--------gleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 210 CFVQICEKY-----LQGYYSS--------GLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHH-----ccccccc--------chhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 999999874 3467765 677777777899999999999999999999999999999997
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.28 E-value=8.6e-12 Score=137.50 Aligned_cols=136 Identities=18% Similarity=0.300 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHh
Q 003745 263 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 342 (798)
Q Consensus 263 EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tL 342 (798)
..|.|.||.++|+.. .+. +.+..|. -+..|+-||+.|||+|.+||....|.|.+|++.||-+|
T Consensus 130 rsd~fN~F~ai~~kY----------IPk--dcrpkg~-----~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sL 192 (669)
T KOG3636|consen 130 RSDEFNVFFAITTKY----------IPK--DCRPKGQ-----IFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASL 192 (669)
T ss_pred cchhhhhhHhhhhcc----------cCC--CCCCCCc-----cchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHH
Confidence 467899999999863 332 1222232 24577789999999999999999999999999999999
Q ss_pred hCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHC
Q 003745 343 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATE--NATTCLQRLLN 420 (798)
Q Consensus 343 FaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d--~~te~Lq~L~n 420 (798)
|+...+.+.+.-|||.+|-...+ -+++++++-+|+.-|++||... .-++++++|-+
T Consensus 193 Fas~~Stev~~a~WdlY~qqaDP----------------------F~vffLaliiLiNake~ILq~~sdsKEe~ikfLen 250 (669)
T KOG3636|consen 193 FASSMSTEVCHALWDLYIQQADP----------------------FLVFFLALIILINAKEEILQVKSDSKEEAIKFLEN 250 (669)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCc----------------------eehHHHHHHHhcccHHHHhhhccccHHHHHHHHHc
Confidence 99999999999999999987763 2677889999999999999854 34689999999
Q ss_pred CCCC---CCHHHHHHHHHHH
Q 003745 421 FPVN---INLKKIIGKTKSL 437 (798)
Q Consensus 421 ~P~~---iDv~~LI~kA~~L 437 (798)
.|.. .|+..+...|...
T Consensus 251 mp~~L~~eDvpDffsLAqyY 270 (669)
T KOG3636|consen 251 MPAQLSVEDVPDFFSLAQYY 270 (669)
T ss_pred CchhcccccchhHHHHHHHH
Confidence 9964 6777777766544
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.90 E-value=6.4e-09 Score=121.42 Aligned_cols=251 Identities=15% Similarity=0.152 Sum_probs=175.8
Q ss_pred ccccccccc--cCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCC
Q 003745 16 RSVGSVSER--SGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPL 93 (798)
Q Consensus 16 ~~~~~~~~r--~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPL 93 (798)
.+.+-+-|+ ++++..+|.++|+.++-.-.. . + +.-.++|.+++..--.
T Consensus 172 ~s~~~l~e~Ve~~~p~~frli~~qlLssatd~-~-------q--~~I~e~~sdl~~~s~~-------------------- 221 (948)
T KOG4436|consen 172 KSLHKLKELVEGGIPMHFRLIRWQLLSSATDR-E-------Q--ALIFEDYSDLAPCSSQ-------------------- 221 (948)
T ss_pred hchhhhHHHHhcCCchHHHHHHHHHhcccccc-h-------h--hHHHHHHHHHhhhcch--------------------
Confidence 334444444 557899999999999743221 1 0 1224456666533110
Q ss_pred CCCCCCCccccCCChHHHHhHHhhhcccCCCCccCCCCcc---------HHHHHHHHHHHHHhhCCCCCccCCchhhHHH
Q 003745 94 SQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPG---------CQGMLRRILLLWCLRHPEFGYRQGMHELLAP 164 (798)
Q Consensus 94 s~n~dS~W~~~F~d~El~kqI~kDV~RT~pe~~~fFq~~~---------~q~~L~RIL~~yal~nPeiGY~QGMnEIlAp 164 (798)
..+..+.-.|.+|+.||+|+| .||+... .+++|.++..+|....-++||+||-+.+++.
T Consensus 222 -----------~Ek~~~~~~Irrdi~~~~~eh-~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gl 289 (948)
T KOG4436|consen 222 -----------QEKELHIGIIRRDIERTYPEH-YFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGL 289 (948)
T ss_pred -----------hhhhHHHHHHHHHhhccCcce-eeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHH
Confidence 112234568999999999999 8887532 4899999999999999999999999999998
Q ss_pred HHHHhhhhhhhhhhhccccccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhc
Q 003745 165 LLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLS 244 (798)
Q Consensus 165 LL~V~~~D~~~lsev~~~yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~ls 244 (798)
+++++.
T Consensus 290 l~l~~~-------------------------------------------------------------------------- 295 (948)
T KOG4436|consen 290 LLLQMP-------------------------------------------------------------------------- 295 (948)
T ss_pred HHhcCc--------------------------------------------------------------------------
Confidence 877652
Q ss_pred cccccccchhhhcccchhhHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhH-HHHHH
Q 003745 245 DAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADS-SLHSH 323 (798)
Q Consensus 245 d~ygaegelg~~Ls~k~~EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DP-eL~~H 323 (798)
+..+|+.+..+|.. |++...|.+.. .++-..+..++...+.+-| .|+.|
T Consensus 296 ------------------~E~assv~~~lm~~----~rl~~l~kpe~--------~~l~~~~~q~e~~~q~~sp~dl~sH 345 (948)
T KOG4436|consen 296 ------------------VEEASSVKVQLMIL----YRLRELSKPEM--------EPLGLCMFQLECTNQDQSPMDLFSH 345 (948)
T ss_pred ------------------HHHHHHHHHHHHHh----hcccccCCccc--------chhHHHHHhhcccccccchhHHhhc
Confidence 45678889999987 44667776542 2333334566777788888 99999
Q ss_pred HHHcCCCCcchhhHHHHHhhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHH
Q 003745 324 LVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRS 403 (798)
Q Consensus 324 L~~lgIePqlFalRWf~tLFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~ 403 (798)
+.+.+++...|+-.||+++|...||+.-.-++-|.+.+.|- .+++.+.+|++...++
T Consensus 346 ~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egl-----------------------lk~fr~~ia~~~~~~d 402 (948)
T KOG4436|consen 346 FPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGL-----------------------LKRFRDSIAYLHQLRD 402 (948)
T ss_pred ccccCCCccHHHHHHHHHhhcccCchhhccccccccccccH-----------------------HHHHhhhHHHHHHHhh
Confidence 99999999999999999999999999999999998877653 4556888888844444
Q ss_pred -HHhcCCChHHHHHHHHC-CCC--CCCHHHHHHHHHH
Q 003745 404 -SLLATENATTCLQRLLN-FPV--NINLKKIIGKTKS 436 (798)
Q Consensus 404 -~LL~~d~~te~Lq~L~n-~P~--~iDv~~LI~kA~~ 436 (798)
.++..| +...++..++ .+. .-++.++...|..
T Consensus 403 ~~~~s~D-~EG~~~~~qr~~s~~vggtp~k~~t~a~q 438 (948)
T KOG4436|consen 403 IELESLD-MEGMLSYFQRNRSNTVGGTPDKLRTAAWQ 438 (948)
T ss_pred hhhhccC-ccccccchhhccccccCCCCchHHHHHHH
Confidence 455555 3555555542 222 1345555554443
No 20
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.81 E-value=9.5e-07 Score=99.28 Aligned_cols=56 Identities=34% Similarity=0.560 Sum_probs=49.4
Q ss_pred HhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHh
Q 003745 112 KMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL 169 (798)
Q Consensus 112 kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~ 169 (798)
-.|++|+.|+.... -||.+....+. +|+.++|-.++-+-||.|||.+|++|++.-+
T Consensus 608 ~~~~kd~e~~~~~~-~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ 663 (813)
T KOG1648|consen 608 HRIDKDVERCDRNL-MFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTF 663 (813)
T ss_pred eeecchhhhCcchh-eeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCCh
Confidence 36789999998776 89999888877 8999999999999999999999999987554
No 21
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0046 Score=66.88 Aligned_cols=81 Identities=15% Similarity=0.362 Sum_probs=57.9
Q ss_pred chhhHHHHHhhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHH----hcC
Q 003745 333 YFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSL----LAT 408 (798)
Q Consensus 333 lFalRWf~tLFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~L----L~~ 408 (798)
.|+ .|-+-||+ |+|+--..|++|.|+.+|. .++..+++|||.....-- |++
T Consensus 208 vya-dwqrwlfg-elplcyfarvfdvflvegy-----------------------kvlyrvalailkffhkvragqples 262 (559)
T KOG2801|consen 208 VYA-DWQRWLFG-ELPLCYFARVFDVFLVEGY-----------------------KVLYRVALAILKFFHKVRAGQPLES 262 (559)
T ss_pred HHH-HHHHHHhc-cchHHHHHHHhhheeecch-----------------------HHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 444 67777774 8999999999999999886 467889999998775533 333
Q ss_pred CCh-HHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 003745 409 ENA-TTCLQRLLNFPVNINLKKIIGKTKSLQ 438 (798)
Q Consensus 409 d~~-te~Lq~L~n~P~~iDv~~LI~kA~~L~ 438 (798)
+.. .++-.+...+.....+++|+++|..++
T Consensus 263 dsvkqdirtfvrdiaktvspekllekafair 293 (559)
T KOG2801|consen 263 DSVKQDIRTFVRDIAKTVSPEKLLEKAFAIR 293 (559)
T ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 321 234444555555688999999987664
No 22
>PF14961 BROMI: Broad-minded protein
Probab=96.65 E-value=0.033 Score=69.55 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=92.5
Q ss_pred ccChhHHHH-HHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCC
Q 003745 296 LTCLLPVIE-ASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDD 374 (798)
Q Consensus 296 ~tglp~i~~-~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~ 374 (798)
..|++++.. -+..++.+|+.-.|.+|.-|.--|..|...|.||+.-+|=.-+++..+...-=..+..|.
T Consensus 1156 ~s~i~p~~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~---------- 1225 (1296)
T PF14961_consen 1156 ESGIHPVYFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP---------- 1225 (1296)
T ss_pred hcCCCchhhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc----------
Confidence 356777654 346889999999999999999999999999999999999999999998776666666554
Q ss_pred CCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCC-C-CCCCHHHHHHHHHHHHHHHh
Q 003745 375 AGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNF-P-VNINLKKIIGKTKSLQALAL 442 (798)
Q Consensus 375 ~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~-P-~~iDv~~LI~kA~~L~~~~~ 442 (798)
.+-+|+|||++.+.+.+||...- +.-|+.+++- | ....+..-+.....|...|.
T Consensus 1226 -------------dyqvY~~VailkHlq~~ilq~~q-~q~L~~flke~~l~gF~~~~~~~yM~~Le~~yR 1281 (1296)
T PF14961_consen 1226 -------------DYQVYICVAILKHLQPEILQHTQ-TQDLQVFLKEEALRGFRVSDYLEYMENLEQRYR 1281 (1296)
T ss_pred -------------cceeehhHHHHHHhhHHHHHhhh-hchHHHHhhhccccceeHHhHHHHHHHHHHHhH
Confidence 24468999999999999998653 4445555542 2 23556666665555554443
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=55.54 E-value=11 Score=44.48 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=35.2
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLL 72 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~l 72 (798)
..+..+.+|+.+|++|||+|+.+.+ .++....-...|..|..|...+.
T Consensus 75 ~~gi~psir~evw~fll~~y~~~~~-~~~~~~~r~~~~~~~~~l~~~c~ 122 (488)
T KOG2197|consen 75 LGGIDPSIRGEVWEFLLGCYDLDST-FEERNQLRVARRPQYNELLLVCQ 122 (488)
T ss_pred cCCCCCcccchhHHHHhcccCCCCc-hHHHHHHHhhcccchHHHHHHcc
Confidence 4567899999999999999997655 45433333455678998876653
Done!