Query 003745
Match_columns 798
No_of_seqs 297 out of 1703
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 02:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 9.3E-49 3.2E-53 429.0 27.1 311 24-445 31-386 (396)
2 2qfz_A TBC1 domain family memb 100.0 1.5E-48 5.2E-53 417.6 26.8 290 24-446 48-341 (345)
3 2qq8_A TBC1 domain family memb 100.0 7.2E-45 2.5E-49 389.0 23.0 262 24-437 46-308 (334)
4 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.4E-43 8.4E-48 372.3 20.7 237 24-437 31-274 (310)
5 3qye_A TBC1 domain family memb 100.0 3.6E-43 1.2E-47 373.7 21.2 246 24-437 57-307 (331)
6 4hl4_A TBC1 domain family memb 100.0 1E-41 3.4E-46 357.9 21.0 202 111-442 83-290 (292)
7 3qwl_A TBC1 domain family memb 100.0 4.6E-34 1.6E-38 302.7 21.6 143 263-446 149-291 (294)
8 2cwy_A Hypothetical protein TT 10.2 1.6E+02 0.0054 26.0 2.8 48 389-437 41-91 (94)
9 2js3_A Uncharacterized protein 10.0 86 0.0029 27.6 0.9 12 153-164 17-28 (96)
10 1erd_A Pheromone ER-2; NMR {Eu 8.7 56 0.0019 24.4 -0.6 12 146-157 11-22 (40)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=9.3e-49 Score=428.96 Aligned_cols=311 Identities=22% Similarity=0.378 Sum_probs=237.6
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
++|.++.+|+.+|+++||++|.+.+ +|...++++|..|..++++++.+.
T Consensus 31 ~~GIP~~lR~~vW~~LLg~~~~~~~---~~~~~l~~~~~~Y~~l~~~~~~~~---------------------------- 79 (396)
T 1fkm_A 31 WNGIPKIHRPVVWKLLIGYLPVNTK---RQEGFLQRKRKEYRDSLKHTFSDQ---------------------------- 79 (396)
T ss_dssp TTCCCGGGHHHHHHHHTTCSCSBGG---GHHHHHHHHHHHHHHHHHHTSSSS----------------------------
T ss_pred HcCCCHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHHHHHHHHHHHhhcc----------------------------
Confidence 3577889999999999999998764 355677889999999999977420
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcccc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEH 183 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~y 183 (798)
...+.++.++|++||.||+|++ .||+.+.++++|+|||++||++||++|||||||+|+||||+|+..+......+
T Consensus 80 ~~~~~~~~~qI~~Dv~RT~p~~-~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~---- 154 (396)
T 1fkm_A 80 HSRDIPTWHQIEIDIPRTNPHI-PLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI---- 154 (396)
T ss_dssp CSTHHHHHHHHHHHGGGSSTTS-GGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG----
T ss_pred CcccHHHHHHHHHHhhhhCCCc-ccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccc----
Confidence 0134578899999999999999 99999999999999999999999999999999999999999986431000000
Q ss_pred ccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCC-CChhhHHHHhhccccccccchhhhcccchh
Q 003745 184 EDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDE-LDPEIQTIVQLSDAYGAEGELGIVLSEKFM 262 (798)
Q Consensus 184 ed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~e-ld~~~~~i~~lsd~ygaegelg~~Ls~k~~ 262 (798)
+..++ ++ +++ ++.+ ...++
T Consensus 155 -----~~~~~-----------~~-----------------------~~~~l~~~---------------------~~~~~ 174 (396)
T 1fkm_A 155 -----DDVEI-----------KD-----------------------PSTYMVDE---------------------QITDL 174 (396)
T ss_dssp -----GGTTT-----------SC-----------------------GGGTCCHH---------------------HHHHH
T ss_pred -----ccccc-----------cc-----------------------hhhccchh---------------------hhhhh
Confidence 00000 00 000 1100 11346
Q ss_pred hHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHh
Q 003745 263 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 342 (798)
Q Consensus 263 EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tL 342 (798)
|+||||||.+||..+ .++|.+ +++++...+..|..||+.+||+||+||.++||+|.+|++|||+||
T Consensus 175 E~daF~~f~~lm~~~------~~~f~~--------~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~L 240 (396)
T 1fkm_A 175 EADTFWCLTKLLEQI------TDNYIH--------GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL 240 (396)
T ss_dssp HHHHHHHHHHHHGGG------GGGSST--------TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH------HHHHhh--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 999999999999974 477875 467888899999999999999999999999999999999999999
Q ss_pred hCcCCChHHHHHHHHHHhhcCCCCC-----------CC--CCCCCC--------------------------C-CCcccc
Q 003745 343 FGREFSLGDLLIIWDEIFASDSSKV-----------NK--DTEDDA--------------------------G-SGFGIL 382 (798)
Q Consensus 343 FaREFpL~dlLrIWD~Ifa~g~~~~-----------~~--~~e~~~--------------------------~-~~F~i~ 382 (798)
|+|+||+++++||||.||++|.... +. ...... + ..+.+.
T Consensus 241 F~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T 1fkm_A 241 LMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMR 320 (396)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcc
Confidence 9999999999999999999871000 00 000000 0 001111
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHhhcC
Q 003745 383 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN----INLKKIIGKTKSLQALALDAN 445 (798)
Q Consensus 383 ~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~~----iDv~~LI~kA~~L~~~~~~~~ 445 (798)
.++...|++|+|+|||..+|+.||+++ ++++|++|+++|.. .|++.||.+|..++..+..++
T Consensus 321 ~~~~~~~~~~v~~AlL~~~r~~Ll~~d-f~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~ 386 (396)
T 1fkm_A 321 QSSLNEFHVFVCAAFLIKWSDQLMEMD-FQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT 386 (396)
T ss_dssp --CHHHHHHHHHHHHHHHTHHHHTTCC-HHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence 112347999999999999999999977 58999999999974 599999999999999997654
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.5e-48 Score=417.62 Aligned_cols=290 Identities=21% Similarity=0.383 Sum_probs=232.8
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
|+|.++.+|+.+|+++||++|.+.+ +|...++++|..|..+++++...+. ++
T Consensus 48 ~~GiP~~~R~~vW~~llg~~p~~~~---~~~~~l~~~~~~Y~~l~~~~~~~~~--------------------~~----- 99 (345)
T 2qfz_A 48 WSGIPKPVRPMTWKLLSGYLPANVD---RRPATLQRKQKEYFAFIEHYYDSRN--------------------DE----- 99 (345)
T ss_dssp TTCCCGGGHHHHHHHHTTSSCSBGG---GHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HCCCCHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHHHHHHHHHhhcCCC--------------------cc-----
Confidence 4678899999999999999998654 4556778899999999998764321 00
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcccc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEH 183 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~y 183 (798)
.+.+..++|++||.||+|+ .+|+.+.++++|+|||++||.+||++|||||||+|+||||+++..+...
T Consensus 100 --~~~~~~~~I~~Dv~RT~p~--~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~-------- 167 (345)
T 2qfz_A 100 --VHQDTYRQIHIDIPRMSPE--ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIE-------- 167 (345)
T ss_dssp ---CHHHHHHHHHHGGGCSCH--HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC--------
T ss_pred --chHHHHHHHHHhCcccCCc--cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcc--------
Confidence 1246789999999999998 7999999999999999999999999999999999999999998653110
Q ss_pred ccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhh
Q 003745 184 EDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFME 263 (798)
Q Consensus 184 ed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~E 263 (798)
+.+. ..+ ++..++.+. ....|
T Consensus 168 --------------~~~~-~~~-----------------------~~~~l~~~~---------------------~~~~E 188 (345)
T 2qfz_A 168 --------------AEEV-DTV-----------------------DVSGVPAEV---------------------LCNIE 188 (345)
T ss_dssp --------------------CC-----------------------CCTTSCHHH---------------------HHHHH
T ss_pred --------------cccc-ccc-----------------------chhhhhhhh---------------------hhhHH
Confidence 0000 000 111222211 12359
Q ss_pred HHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhh
Q 003745 264 HDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLF 343 (798)
Q Consensus 264 aDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLF 343 (798)
+||||||.+||...+ ++|.. +++++...+..+..||+.+||+||+||.++||+|.+|++|||+|||
T Consensus 189 ~daF~~f~~lm~~~~------~~y~~--------~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF 254 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQ------DNYTF--------AQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLL 254 (345)
T ss_dssp HHHHHHHHHHHHTSG------GGSST--------TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHccc------ccccc--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999999999753 67765 3678888899999999999999999999999999999999999999
Q ss_pred CcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCC
Q 003745 344 GREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 423 (798)
Q Consensus 344 aREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~ 423 (798)
+|+||+++++||||.||++|... ..|++|+|+|||...|++||+..++++++++|+++|.
T Consensus 255 ~~~~p~~~~lrlWD~~l~~g~~~--------------------~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~ 314 (345)
T 2qfz_A 255 MREVPLRCTIRLWDTYQSEPDGF--------------------SHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPT 314 (345)
T ss_dssp TTTSCHHHHHHHHHHHTTSTTTT--------------------TTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSC
T ss_pred cccCCHHHHHHHHHHHHhCCCCh--------------------hHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCC
Confidence 99999999999999999988631 1378999999999999999987778999999999997
Q ss_pred C----CCHHHHHHHHHHHHHHHhhcCC
Q 003745 424 N----INLKKIIGKTKSLQALALDANL 446 (798)
Q Consensus 424 ~----iDv~~LI~kA~~L~~~~~~~~~ 446 (798)
. .|++.||++|..|+..+..++.
T Consensus 315 ~~~~~~di~~ll~~A~~l~~~~~~~~~ 341 (345)
T 2qfz_A 315 AHWDDEDISLLLAEAYRLKFAFADAPN 341 (345)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHh
Confidence 5 3799999999999998876543
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-45 Score=389.05 Aligned_cols=262 Identities=19% Similarity=0.291 Sum_probs=208.9
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
|+|.++.+|+.+|+++||+... . ..+.....+++.++.|..+.......+ .-+.|++.
T Consensus 46 ~~GIP~~lR~~vW~~llg~~~~-~-~~~~y~~ll~~~~~~~~~~~~~~~~~~------------~~d~~~~~-------- 103 (334)
T 2qq8_A 46 WQGIPPSVRGKVWSLAIGNELN-I-THELFDICLARAKERWRSLSTGGSEVE------------NEDAGFSA-------- 103 (334)
T ss_dssp HTCCCHHHHHHHHHHHHCCTTC-C-CHHHHHHHHHHHHHHC---------------------------------------
T ss_pred HCCCCHHHHHHHHHHHhCCccc-c-CHHHHHHHHHHHHHHHHHhccccccCc------------cccccccc--------
Confidence 4788999999999999998532 2 223333444555666666543321100 01223221
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCc-cHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTP-GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNE 182 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~-~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~ 182 (798)
..+.+..++|++||.||+|++ .+|+.. ..++.|+|||.+||.+||++|||||||+|+|+||+++
T Consensus 104 -~~~~~~~~~I~~Dv~RT~p~~-~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~------------- 168 (334)
T 2qq8_A 104 -ADREASLELIKLDISRTFPNL-CIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL------------- 168 (334)
T ss_dssp ----CCHHHHHHHHHHTSSGGG-CSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-------------
T ss_pred -ccchhHHHHHHHHHhhcCCCc-hhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-------------
Confidence 112456799999999999999 899875 4799999999999999999999999999999999874
Q ss_pred cccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchh
Q 003745 183 HEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFM 262 (798)
Q Consensus 183 yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~ 262 (798)
.
T Consensus 169 -------------------------------------------------------------------------------~ 169 (334)
T 2qq8_A 169 -------------------------------------------------------------------------------D 169 (334)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred hHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHh
Q 003745 263 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 342 (798)
Q Consensus 263 EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tL 342 (798)
|++|||||.+||.... ..+||.. +.+++...+..+..||+.++|+||+||.++||+|.+|+++||+||
T Consensus 170 E~~aF~~~~~l~~~~~----~~~~~~~--------~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltl 237 (334)
T 2qq8_A 170 TADAFIAFSNLLNKPC----QMAFFRV--------DHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTL 237 (334)
T ss_dssp HHHHHHHHHHHHTSHH----HHHHHSS--------CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhh----HHhccCC--------ChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHH
Confidence 7899999999998642 3467764 346777788899999999999999999999999999999999999
Q ss_pred hCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCC
Q 003745 343 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 422 (798)
Q Consensus 343 FaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P 422 (798)
|+++||++.++||||.||++|. .+++++|+|||...|+.||+.+ +++++++|+++|
T Consensus 238 F~~~lp~~~~lriWD~~l~eg~-----------------------~~l~~valaiL~~~~~~Ll~~d-~~~il~~L~~lp 293 (334)
T 2qq8_A 238 YSKSLPLDLACRIWDVFCRDGE-----------------------EFLFRTALGILKLFEDILTKMD-FIHMAQFLTRLP 293 (334)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCH-----------------------HHHHHHHHHHHHHTHHHHHTCC-HHHHHHHHHSCC
T ss_pred hcccCCHHHHHHHHHHHHHcCC-----------------------HHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHhCC
Confidence 9999999999999999999875 5889999999999999999987 589999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 003745 423 VNINLKKIIGKTKSL 437 (798)
Q Consensus 423 ~~iDv~~LI~kA~~L 437 (798)
..+|++.|+.+|..+
T Consensus 294 ~~~d~~~l~~~a~~l 308 (334)
T 2qq8_A 294 EDLPAEELFASIATI 308 (334)
T ss_dssp TTCCHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHc
Confidence 999999999998876
No 4
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=372.28 Aligned_cols=237 Identities=22% Similarity=0.402 Sum_probs=206.0
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
|+|.|+.+|+.+|+++||+.+.. ..+..|..+..+.
T Consensus 31 ~~GIP~~lR~~vW~~llg~~~~~------------~~~~~Y~~l~~~~-------------------------------- 66 (310)
T 3hzj_A 31 KSGVPEALRAEVWQLLAGCHDNQ------------AMLDRYRILITKD-------------------------------- 66 (310)
T ss_dssp HHCCCGGGHHHHHHHHTTCCCCH------------HHHHHHHHHTTSC--------------------------------
T ss_pred HCCCCHHHHHHHHHHHHCCCcch------------hHHHHHHHHHhcc--------------------------------
Confidence 67889999999999999998731 2345677663110
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCc--cHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRN 181 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~--~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~ 181 (798)
....++|++||.||+|++ .+|+.+ .+++.|+|||.+||.+||++|||||||+|+|+||+++.
T Consensus 67 ----~~~~~~I~~Dv~Rt~p~~-~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~----------- 130 (310)
T 3hzj_A 67 ----SAQESVITRDIHRTFPAH-DYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMP----------- 130 (310)
T ss_dssp ----CTTHHHHHHHHTTSSTTS-TTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSC-----------
T ss_pred ----CCcHHHHHHHHHhhCCCc-hhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCC-----------
Confidence 011489999999999999 899876 58999999999999999999999999999999998861
Q ss_pred ccccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccch
Q 003745 182 EHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF 261 (798)
Q Consensus 182 ~yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~ 261 (798)
T Consensus 131 -------------------------------------------------------------------------------- 130 (310)
T 3hzj_A 131 -------------------------------------------------------------------------------- 130 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHH
Q 003745 262 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRV 341 (798)
Q Consensus 262 ~EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~t 341 (798)
|++|||||.+||.. +.+.++|.+ +++++...+..+..||+.+||+||+||.++|++|.+|+++||+|
T Consensus 131 -e~~aF~~l~~l~~~----~~~~~~~~~--------~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~lt 197 (310)
T 3hzj_A 131 -EEQAFCVLVKIMYD----YGLRDLYRN--------NFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLT 197 (310)
T ss_dssp -HHHHHHHHHHHHHT----SCGGGGTHH--------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHH
T ss_pred -HHHHHHHHHHHHhc----ccccccccc--------cHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHH
Confidence 78999999999986 346788875 57788888899999999999999999999999999999999999
Q ss_pred hhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-C
Q 003745 342 LFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLL-N 420 (798)
Q Consensus 342 LFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~-n 420 (798)
||+++||++.++||||.+|++|. .+++++|+|||...|+.||+.+ +++++++|+ +
T Consensus 198 lF~~~lp~~~~~riwD~~l~~g~-----------------------~~l~~v~lail~~~~~~Ll~~d-~~~~l~~l~~~ 253 (310)
T 3hzj_A 198 LFTAKFPLCMVFHIIDLLLCEGL-----------------------NIIFHVALALLKTSKEDLLQAD-FEGALKFFRVQ 253 (310)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCT-----------------------THHHHHHHHHHHHTHHHHHTCC-HHHHHHHHHTH
T ss_pred HHhccCCHHHHHHHHHHHHHCCc-----------------------HHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHh
Confidence 99999999999999999999986 3789999999999999999985 699999997 4
Q ss_pred CCC----CCCHHHHHHHHHHH
Q 003745 421 FPV----NINLKKIIGKTKSL 437 (798)
Q Consensus 421 ~P~----~iDv~~LI~kA~~L 437 (798)
+|. ..|++.||+.|..+
T Consensus 254 lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 254 LPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HHHTTCSHHHHHHHHHHHHHS
T ss_pred CcccccccccHHHHHHHHHhc
Confidence 553 36899999999776
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=3.6e-43 Score=373.75 Aligned_cols=246 Identities=23% Similarity=0.347 Sum_probs=206.5
Q ss_pred ccCCCCCchHHHHHHhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 003745 24 RSGPLANLRGVKWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGR 103 (798)
Q Consensus 24 r~~~~~~LR~~vWriLLG~lP~~~s~~ee~r~~l~~~R~~Y~~Lr~~~li~P~~~kd~~~~~d~~idnPLs~n~dS~W~~ 103 (798)
|+|.++.+|+.+|+++||+.+...+. . ......+..|..+.++..
T Consensus 57 ~~GIP~~lR~~vW~~Llg~~~~~~~~-~---~~~~~~~~~Y~~l~~~~~------------------------------- 101 (331)
T 3qye_A 57 GQGVPRHHRGEIWKFLAEQFHLKHQF-P---SKQQPKDVPYKELLKQLT------------------------------- 101 (331)
T ss_dssp HTCCCGGGHHHHHHHHHHHHHHHCCC-C---SSSCCCCCCHHHHTTSCC-------------------------------
T ss_pred HcCCCHHHHHHHHHHHhCcchhhhcc-h---hhhhhchHHHHHHHHhcC-------------------------------
Confidence 57889999999999999987622110 0 000122345666532100
Q ss_pred cCCChHHHHhHHhhhcccCCCCccCCCCc--cHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhcc
Q 003745 104 FFRSAELEKMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRN 181 (798)
Q Consensus 104 ~F~d~El~kqI~kDV~RT~pe~~~fFq~~--~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~ 181 (798)
...++|++||.||+|++ .+|+.+ ..++.|+|||.+||.+||++|||||||+|+|+||+++.
T Consensus 102 -----~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~----------- 164 (331)
T 3qye_A 102 -----SQQHAILIDLGRTFPTH-PYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS----------- 164 (331)
T ss_dssp -----TTHHHHHHHHTTSSTTS-TTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC-----------
T ss_pred -----CchhHHHHhhcccCCCc-hhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh-----------
Confidence 11479999999999999 899876 68999999999999999999999999999999987651
Q ss_pred ccccccccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccch
Q 003745 182 EHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF 261 (798)
Q Consensus 182 ~yed~f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~ 261 (798)
T Consensus 165 -------------------------------------------------------------------------------- 164 (331)
T 3qye_A 165 -------------------------------------------------------------------------------- 164 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHH
Q 003745 262 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRV 341 (798)
Q Consensus 262 ~EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~t 341 (798)
|++|||||..||... .+.++|.+ +++++...+..+..||+.+||+||+||.+.|+.|.+|+++||+|
T Consensus 165 -E~~aF~~l~~l~~~~----~~~~~~~~--------~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~ 231 (331)
T 3qye_A 165 -EEEAFKMLKFLMFDM----GLRKQYRP--------DMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 231 (331)
T ss_dssp -HHHHHHHHHHHHTTT----CGGGGGST--------TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHS
T ss_pred -HHHHHHHHHHHHHhc----CchhcCCC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 789999999999874 36688876 46788888899999999999999999999999999999999999
Q ss_pred hhCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCC
Q 003745 342 LFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNF 421 (798)
Q Consensus 342 LFaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~ 421 (798)
||+++||++.++||||.+|++|. .+++++|+|||...|+.||+.+++++++++|+++
T Consensus 232 lF~~~lp~~~~lrlwD~~l~~g~-----------------------~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 232 MFASQFPLGFVARVFDMIFLQGT-----------------------EVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCT-----------------------THHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HhhhhCCHHHHHHHHHHHHHCCc-----------------------HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 99999999999999999999986 3789999999999999999987789999999996
Q ss_pred CCCC---CHHHHHHHHHHH
Q 003745 422 PVNI---NLKKIIGKTKSL 437 (798)
Q Consensus 422 P~~i---Dv~~LI~kA~~L 437 (798)
++.+ |++.||++|..+
T Consensus 289 ~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 6555 788899998665
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=1e-41 Score=357.94 Aligned_cols=202 Identities=21% Similarity=0.333 Sum_probs=177.6
Q ss_pred HHhHHhhhcccCCCCccCCCC----ccHHHHHHHHHHHHHhhCCCCCccCCchhhHHHHHHHhhhhhhhhhhhccccccc
Q 003745 111 EKMVDQDLSRLYPEHGSYFQT----PGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDH 186 (798)
Q Consensus 111 ~kqI~kDV~RT~pe~~~fFq~----~~~q~~L~RIL~~yal~nPeiGY~QGMnEIlApLL~V~~~D~~~lsev~~~yed~ 186 (798)
.++|++||.||+|.+ .+|.. ...|+.|+|||.+|+.+||++|||||||+|+||||+++.
T Consensus 83 ~~qI~~Dv~RT~~~~-~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~---------------- 145 (292)
T 4hl4_A 83 YQQVLLDVRRSLRRF-PPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG---------------- 145 (292)
T ss_dssp HHHHHHHHHTTGGGS-CTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC----------------
T ss_pred HHHHHHhhhhhhhhc-cCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC----------------
Confidence 589999999999998 67654 347889999999999999999999999999999998761
Q ss_pred cccccCCCccccCccccccchhhhccchhhccccCCCCccccccCCCChhhHHHHhhccccccccchhhhcccchhhHHH
Q 003745 187 FTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDA 266 (798)
Q Consensus 187 f~d~fdG~~~~e~d~~y~~d~~k~~d~~ede~~~~g~~~k~~sl~eld~~~~~i~~lsd~ygaegelg~~Ls~k~~EaDA 266 (798)
|++|
T Consensus 146 ----------------------------------------------------------------------------e~~a 149 (292)
T 4hl4_A 146 ----------------------------------------------------------------------------ERLA 149 (292)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 7899
Q ss_pred HHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHhhCcC
Q 003745 267 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGRE 346 (798)
Q Consensus 267 F~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tLFaRE 346 (798)
||||..||... +.+||.++ ++++...+..+..+|+.+||+||+||.+.|+. .+|+++||+|+|+++
T Consensus 150 F~~l~~l~~~~-----l~~~~~~~--------~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~ 215 (292)
T 4hl4_A 150 TSLVEKLSTHH-----LRDFMDPT--------MDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHV 215 (292)
T ss_dssp HHHHHHHHHTT-----TTGGGCSS--------SCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTT
T ss_pred HHHHHHHHHHH-----HHHhcccc--------hHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhh
Confidence 99999999952 55788763 44555667789999999999999999999995 699999999999999
Q ss_pred CC-hHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHCCCCC
Q 003745 347 FS-LGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATE-NATTCLQRLLNFPVN 424 (798)
Q Consensus 347 Fp-L~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d-~~te~Lq~L~n~P~~ 424 (798)
+| ++.++||||.+|+++. .+++++|+|||+..|++||+.+ +++.++++|+++|..
T Consensus 216 l~~~~~~~rlWD~~l~~g~-----------------------~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~ 272 (292)
T 4hl4_A 216 LSDFRHVVRLYDFFLACHP-----------------------LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQD 272 (292)
T ss_dssp SCCHHHHHHHHHHHHHSCT-----------------------THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSS
T ss_pred cCcHHHHHHHHHHHHHcCC-----------------------cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 96 9999999999999885 3788999999999999999973 457888999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 003745 425 INLKKIIGKTKSLQALAL 442 (798)
Q Consensus 425 iDv~~LI~kA~~L~~~~~ 442 (798)
+|++.||++|..|+..+.
T Consensus 273 ~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 273 LPYETLISRAGDLFVQFP 290 (292)
T ss_dssp CCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHCC
Confidence 999999999999987654
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=302.70 Aligned_cols=143 Identities=18% Similarity=0.275 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHhcccCCccccccccCCCCCCcccChhHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcchhhHHHHHh
Q 003745 263 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 342 (798)
Q Consensus 263 EaDAF~mF~~LM~~~~~~~~m~dfF~~s~~~~s~tglp~i~~~~~~l~~LLk~~DPeL~~HL~~lgIePqlFalRWf~tL 342 (798)
|+||||||.+||+.+ .++|.+ ++++++. .+.+||+.+||+||+||.+.|+.|.+|+.|||+|+
T Consensus 149 E~dAFW~f~~Lm~~l------~~~f~~--------~~~gl~~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~l 211 (294)
T 3qwl_A 149 SVDCYWITRRFVNQL------NTKYRD--------SLPQLPK---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRC 211 (294)
T ss_dssp HHHHHHHHHHHHHHH------HTTTTT--------TGGGHHH---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTST
T ss_pred HHHHHHHHHHHHHHH------HHhhCC--------ChhHHHH---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 899999999999984 377876 3566654 35889999999999999999999988888999999
Q ss_pred hCcCCChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCC
Q 003745 343 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 422 (798)
Q Consensus 343 FaREFpL~dlLrIWD~Ifa~g~~~~~~~~e~~~~~~F~i~~s~r~~fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P 422 (798)
|+++||+++++||||.+|+++. .+++++|+|||...|+.||+.+++++++++|+++|
T Consensus 212 F~~~~p~~~vlRlWD~~~~~~~-----------------------~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp 268 (294)
T 3qwl_A 212 FAGCLPESSLQRVWDKVVSGSC-----------------------KILVFVAVEILLTFKIKVMALNSAEKITKFLENIP 268 (294)
T ss_dssp TTTTSCHHHHHHHHHHHHTTCS-----------------------THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCC
T ss_pred hccCCCHHHHHHHHHHHHhCCc-----------------------hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCC
Confidence 9999999999999999999654 48899999999999999999998789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCC
Q 003745 423 VNINLKKIIGKTKSLQALALDANL 446 (798)
Q Consensus 423 ~~iDv~~LI~kA~~L~~~~~~~~~ 446 (798)
+ .|++.||++|..|+..+..++.
T Consensus 269 ~-~di~~ll~~A~~l~~~~~~~~~ 291 (294)
T 3qwl_A 269 Q-DSSDAIVSKAIDLWHKHCGTPV 291 (294)
T ss_dssp S-TTHHHHHHHHHHHHHHHHCCCC
T ss_pred c-ccHHHHHHHHHHHHHHcCCCCc
Confidence 5 7899999999999999987544
No 8
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=10.21 E-value=1.6e+02 Score=25.97 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHCCCCC---CCHHHHHHHHHHH
Q 003745 389 LIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN---INLKKIIGKTKSL 437 (798)
Q Consensus 389 fI~~iavAmLl~~R~~LL~~d~~te~Lq~L~n~P~~---iDv~~LI~kA~~L 437 (798)
-++-+|+|+....|... +...+...+.+|..+|+. +|+..|+..+..+
T Consensus 41 GLIq~Ava~~h~~~gn~-a~~ll~~a~~~L~~~~~~~~gidv~~L~~~~~~~ 91 (94)
T 2cwy_A 41 GVILLAAALHQRRLGRP-GLRNLRKAEARLEGLPCPLMGLDWRSLLQEARRR 91 (94)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTTCCSSBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHH
Confidence 34568888888777665 333346778889899864 9999999877654
No 9
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=9.99 E-value=86 Score=27.57 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=9.9
Q ss_pred CccCCchhhHHH
Q 003745 153 GYRQGMHELLAP 164 (798)
Q Consensus 153 GY~QGMnEIlAp 164 (798)
=|.|||.++++-
T Consensus 17 lyfqgM~~~a~E 28 (96)
T 2js3_A 17 LYFQGMTDTAAE 28 (96)
T ss_dssp BTTBSTTTHHHH
T ss_pred eeeccccccCHH
Confidence 499999998763
No 10
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=8.74 E-value=56 Score=24.42 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=9.4
Q ss_pred HhhCCCCCccCC
Q 003745 146 CLRHPEFGYRQG 157 (798)
Q Consensus 146 al~nPeiGY~QG 157 (798)
+-.|.-+|||||
T Consensus 11 scehtmcgycqg 22 (40)
T 1erd_A 11 SCEHTMCGYCQG 22 (40)
T ss_dssp HTCGGGGGGSCH
T ss_pred hccccccccccC
Confidence 346778999998
Done!